Query 046073
Match_columns 93
No_of_seqs 105 out of 1195
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.2E-31 2.6E-36 185.0 4.2 91 1-92 352-446 (489)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 2.5E-31 5.4E-36 183.0 4.3 89 1-91 360-453 (499)
3 PLN02500 cytochrome P450 90B1 100.0 8.8E-31 1.9E-35 180.5 5.1 91 1-92 350-450 (490)
4 PF00067 p450: Cytochrome P450 100.0 1.1E-30 2.3E-35 175.1 4.5 92 1-92 328-423 (463)
5 PLN02966 cytochrome P450 83A1 100.0 3.1E-30 6.7E-35 178.3 5.0 92 1-92 357-453 (502)
6 PLN02183 ferulate 5-hydroxylas 100.0 4.4E-30 9.6E-35 178.1 5.4 91 1-92 370-465 (516)
7 KOG0157 Cytochrome P450 CYP4/C 100.0 1.9E-30 4.2E-35 179.6 3.5 90 1-91 358-453 (497)
8 PTZ00404 cytochrome P450; Prov 100.0 3.5E-30 7.5E-35 177.1 4.5 87 1-92 349-440 (482)
9 PLN02971 tryptophan N-hydroxyl 100.0 4.7E-30 1E-34 179.0 5.1 92 1-92 393-490 (543)
10 PLN02394 trans-cinnamate 4-mon 100.0 4.6E-30 1E-34 177.2 4.8 92 1-92 359-456 (503)
11 PLN03234 cytochrome P450 83B1; 100.0 1.1E-29 2.4E-34 175.2 4.9 92 1-92 354-452 (499)
12 PLN03141 3-epi-6-deoxocathaste 100.0 1.6E-29 3.4E-34 172.9 4.6 87 1-92 321-411 (452)
13 PLN02774 brassinosteroid-6-oxi 100.0 1.9E-29 4E-34 173.0 4.6 88 1-92 333-424 (463)
14 PLN00168 Cytochrome P450; Prov 100.0 1.9E-29 4.2E-34 175.0 4.2 92 1-92 373-473 (519)
15 PLN00110 flavonoid 3',5'-hydro 100.0 2.9E-29 6.3E-34 173.8 4.8 92 1-92 355-453 (504)
16 PLN02169 fatty acid (omega-1)- 100.0 3.5E-29 7.5E-34 173.3 4.6 91 1-92 361-458 (500)
17 PLN02687 flavonoid 3'-monooxyg 100.0 5.8E-29 1.3E-33 172.5 5.0 92 1-92 363-462 (517)
18 PLN03195 fatty acid omega-hydr 100.0 2.8E-29 6.1E-34 173.9 3.0 91 1-92 378-474 (516)
19 PLN02290 cytokinin trans-hydro 100.0 4.7E-29 1E-33 172.7 3.8 88 1-92 381-473 (516)
20 PLN02655 ent-kaurene oxidase 99.9 1.2E-28 2.6E-33 169.2 4.7 91 1-92 327-421 (466)
21 PLN03018 homomethionine N-hydr 99.9 1.6E-28 3.4E-33 171.3 5.0 92 1-92 380-480 (534)
22 PLN02738 carotene beta-ring hy 99.9 2.2E-28 4.8E-33 173.2 4.9 91 1-92 456-552 (633)
23 PLN02426 cytochrome P450, fami 99.9 2.8E-28 6.1E-33 168.9 4.4 91 1-92 360-456 (502)
24 PLN03112 cytochrome P450 famil 99.9 5.1E-28 1.1E-32 167.5 5.0 92 1-92 362-461 (514)
25 PLN02196 abscisic acid 8'-hydr 99.9 3.1E-28 6.7E-33 167.1 3.7 86 1-92 333-422 (463)
26 KOG0159 Cytochrome P450 CYP11/ 99.9 3.5E-28 7.5E-33 166.5 3.5 89 1-91 383-475 (519)
27 PLN02302 ent-kaurenoic acid ox 99.9 5.9E-28 1.3E-32 165.9 4.5 87 1-92 357-447 (490)
28 PLN02987 Cytochrome P450, fami 99.9 2E-27 4.3E-32 163.7 5.0 90 1-92 336-429 (472)
29 PLN02936 epsilon-ring hydroxyl 99.9 2.8E-27 6E-32 163.3 5.0 92 1-92 343-440 (489)
30 COG2124 CypX Cytochrome P450 [ 99.9 3.4E-27 7.5E-32 160.3 3.6 80 1-91 286-369 (411)
31 KOG0684 Cytochrome P450 [Secon 99.9 1.6E-26 3.5E-31 156.2 3.2 90 1-91 340-441 (486)
32 PLN02648 allene oxide synthase 99.9 4.7E-24 1E-28 147.4 4.8 87 1-91 340-443 (480)
33 PF11138 DUF2911: Protein of u 85.3 1.9 4E-05 26.0 3.6 37 18-55 51-98 (145)
34 PF14550 Peptidase_U35_2: Puta 74.4 1.2 2.7E-05 26.0 0.4 29 18-46 72-101 (122)
35 PF12508 DUF3714: Protein of u 73.4 4.3 9.4E-05 25.8 2.7 20 18-37 74-93 (200)
36 PF08492 SRP72: SRP72 RNA-bind 68.2 4.3 9.3E-05 20.7 1.5 8 53-60 44-51 (59)
37 COG2101 SPT15 TATA-box binding 55.7 3.5 7.5E-05 25.7 -0.2 36 50-85 35-70 (185)
38 cd04518 TBP_archaea archaeal T 54.2 2.9 6.3E-05 25.9 -0.7 35 50-84 29-63 (174)
39 PRK00394 transcription factor; 46.1 5.3 0.00012 24.9 -0.4 34 50-83 28-61 (179)
40 PRK06789 flagellar motor switc 45.4 11 0.00023 20.2 0.7 36 2-37 23-60 (74)
41 TIGR03779 Bac_Flav_CT_M Bacter 42.2 28 0.0006 24.7 2.5 19 19-37 278-296 (410)
42 cd00652 TBP_TLF TATA box bindi 40.6 6.3 0.00014 24.4 -0.7 35 50-84 29-63 (174)
43 KOG3506 40S ribosomal protein 38.5 15 0.00034 18.4 0.6 11 72-82 12-22 (56)
44 PLN00062 TATA-box-binding prot 38.0 6.6 0.00014 24.5 -0.9 35 50-84 29-63 (179)
45 PF11227 DUF3025: Protein of u 37.8 22 0.00047 22.9 1.3 18 39-56 194-211 (212)
46 PF00352 TBP: Transcription fa 36.7 4 8.6E-05 22.1 -1.9 34 51-84 32-65 (86)
47 PRK14759 potassium-transportin 34.9 16 0.00034 15.9 0.3 6 52-57 24-29 (29)
48 cd04516 TBP_eukaryotes eukaryo 32.3 9.5 0.00021 23.7 -0.9 34 50-83 29-62 (174)
49 KOG3302 TATA-box binding prote 32.1 13 0.00027 23.7 -0.4 36 49-84 49-84 (200)
50 KOG3262 H/ACA small nucleolar 28.9 53 0.0011 20.9 2.0 23 40-62 120-143 (215)
51 PRK05933 type III secretion sy 28.1 23 0.0005 24.5 0.3 37 1-37 321-360 (372)
52 COG4704 Uncharacterized protei 27.2 54 0.0012 19.8 1.7 26 23-48 34-59 (151)
53 PTZ00218 40S ribosomal protein 26.0 33 0.00071 17.2 0.6 10 73-82 11-20 (54)
54 PF15442 DUF4629: Domain of un 25.1 29 0.00064 21.1 0.4 19 73-92 124-143 (150)
55 PF04798 Baculo_19: Baculoviru 23.5 28 0.00061 21.1 0.1 20 69-89 58-77 (146)
56 PF09201 SRX: SRX; InterPro: 23.4 29 0.00063 20.9 0.1 12 80-91 19-30 (148)
57 cd04517 TLF TBP-like factors ( 21.8 17 0.00036 22.5 -1.1 36 49-84 120-155 (174)
58 TIGR02115 potass_kdpF K+-trans 21.4 23 0.00051 14.9 -0.4 6 52-57 19-24 (26)
59 PF07886 BA14K: BA14K-like pro 21.4 95 0.0021 13.6 1.6 15 68-82 17-31 (31)
60 PF13567 DUF4131: Domain of un 20.9 76 0.0016 18.3 1.6 31 30-60 129-161 (176)
61 PHA00672 hypothetical protein 20.1 1.2E+02 0.0026 18.1 2.2 21 17-37 41-61 (152)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-31 Score=185.05 Aligned_cols=91 Identities=52% Similarity=0.940 Sum_probs=83.4
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|++|++|++|..++|.+++|++|+||.||+||.|. ++|+||++|+||++|+||||++.. +.......++|||.
T Consensus 352 i~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~ 430 (489)
T KOG0156|consen 352 IKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGS 430 (489)
T ss_pred HHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCC
Confidence 5899999999999999999999999999999999998 899999999999999999999875 22225568999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|+.+|+++++
T Consensus 431 GRR~CpG~~La~~~l~ 446 (489)
T KOG0156|consen 431 GRRICPGEGLARAELF 446 (489)
T ss_pred CcCCCCcHHHHHHHHH
Confidence 9999999999999885
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.5e-31 Score=183.05 Aligned_cols=89 Identities=37% Similarity=0.682 Sum_probs=82.7
Q ss_pred CeeecccCCCcccccceeecCCceEe-cEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEII-GFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFG 75 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~-g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg 75 (93)
|+||||++|+++. +.|.+++|+++. ++.|++|+.|. ++|+||++|+||++|+||||.+.+.+ ...+..|+|||
T Consensus 360 i~ETLR~yP~~~~-~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG 437 (499)
T KOG0158|consen 360 IKETLRLYPPAPF-LNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFG 437 (499)
T ss_pred HHHHHhhCCCccc-ccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCC
Confidence 5799999999999 789999999999 99999999999 89999999999999999999987754 45677999999
Q ss_pred CCCCcCCChhhhhhcc
Q 046073 76 VGRRICPDLPLDITML 91 (93)
Q Consensus 76 ~G~r~C~G~~~a~~e~ 91 (93)
.|||+|+|++||++|+
T Consensus 438 ~GPR~CIGmRfa~mq~ 453 (499)
T KOG0158|consen 438 VGPRNCIGMRFALMEA 453 (499)
T ss_pred CCccccHHHHHHHHHH
Confidence 9999999999999985
No 3
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=8.8e-31 Score=180.50 Aligned_cols=91 Identities=31% Similarity=0.458 Sum_probs=80.3
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcccc------CCCcc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFI------GRNFE 70 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~------~~~~~ 70 (93)
|+|+||++|+++. ++|.+.+|++++||.||+|+.|. ++|+|+++|+||++|+||||++++.... ..++.
T Consensus 350 ikEtlRl~P~~~~-~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~ 428 (490)
T PLN02500 350 INETLRLGNVVRF-LHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNN 428 (490)
T ss_pred HHHHHhcCCCccC-eeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCC
Confidence 5899999999998 57999999999999999999999 8999999999999999999986542211 13467
Q ss_pred ccccCCCCCcCCChhhhhhccC
Q 046073 71 SIPFGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 71 ~~~fg~G~r~C~G~~~a~~e~~ 92 (93)
++|||.|+|.|+|+++|++|++
T Consensus 429 ~lpFG~G~R~CiG~~~A~~el~ 450 (490)
T PLN02500 429 FMPFGGGPRLCAGSELAKLEMA 450 (490)
T ss_pred CcCCCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999974
No 4
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=1.1e-30 Score=175.10 Aligned_cols=92 Identities=38% Similarity=0.665 Sum_probs=80.1
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|++|++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||++.+.........++|||.
T Consensus 328 i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~ 407 (463)
T PF00067_consen 328 IKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGA 407 (463)
T ss_dssp HHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTES
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5799999999996688999999999999999999999 899999999999999999999877522345668999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|+++|++|+.
T Consensus 408 G~r~C~G~~~A~~~~~ 423 (463)
T PF00067_consen 408 GPRMCPGRNLAMMEMK 423 (463)
T ss_dssp STTS-TTHHHHHHHHH
T ss_pred ccccchHHHHHHHHHH
Confidence 9999999999999873
No 5
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=3.1e-30 Score=178.30 Aligned_cols=92 Identities=49% Similarity=0.910 Sum_probs=81.5
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCccccCCCccccccC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVDFIGRNFESIPFG 75 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~~~~~~~~~~~fg 75 (93)
|+|+||++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++| +||++|+||||++.+.........++|||
T Consensus 357 i~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg 436 (502)
T PLN02966 357 VKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFG 436 (502)
T ss_pred HHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCC
Confidence 5799999999998678999999999999999999999 899999999 99999999999875432223456899999
Q ss_pred CCCCcCCChhhhhhccC
Q 046073 76 VGRRICPDLPLDITMLY 92 (93)
Q Consensus 76 ~G~r~C~G~~~a~~e~~ 92 (93)
.|+|+|+|++||++|+.
T Consensus 437 ~G~R~C~G~~~A~~el~ 453 (502)
T PLN02966 437 SGRRMCPGMRLGAAMLE 453 (502)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 99999999999998873
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=4.4e-30 Score=178.05 Aligned_cols=91 Identities=49% Similarity=0.974 Sum_probs=80.4
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcc-ccCCCccccccC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVD-FIGRNFESIPFG 75 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~-~~~~~~~~~~fg 75 (93)
|+|+||++|+++.. .|.+.+|++++|+.||||+.|. ++|+|+++|+||++|+||||++++.. .....+.++|||
T Consensus 370 i~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG 448 (516)
T PLN02183 370 LKETLRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFG 448 (516)
T ss_pred HHHHhccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCC
Confidence 58999999999995 5999999999999999999999 89999999999999999999965432 122455799999
Q ss_pred CCCCcCCChhhhhhccC
Q 046073 76 VGRRICPDLPLDITMLY 92 (93)
Q Consensus 76 ~G~r~C~G~~~a~~e~~ 92 (93)
.|+|+|+|+++|++|+.
T Consensus 449 ~G~R~CiG~~lA~~e~~ 465 (516)
T PLN02183 449 SGRRSCPGMQLGLYALD 465 (516)
T ss_pred CCCCCCCChHHHHHHHH
Confidence 99999999999999974
No 7
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.96 E-value=1.9e-30 Score=179.58 Aligned_cols=90 Identities=38% Similarity=0.725 Sum_probs=80.7
Q ss_pred CeeecccCCCcccccceeecCCceEe-cEEeCCCCeEE----eeccCCCCCC-CCCCcccCcccCCCccccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEII-GFIVPKGARVL----ATSRDESTWD-HAHSFMPIRFLGSDVDFIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~-g~~ip~g~~v~----~~~~~~~~~~-~~~~f~p~R~~~~~~~~~~~~~~~~~f 74 (93)
|+||||++|+++. +.|.+.+|+++. |+.||+|+.|. ++|||+.+|+ ||++|+|+||.++......++++|+||
T Consensus 358 i~EsLRLyppvp~-~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipF 436 (497)
T KOG0157|consen 358 IKESLRLYPPVPL-VARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPF 436 (497)
T ss_pred HHHHhccCCCCch-hhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCC
Confidence 5899999999999 679999999995 89999999999 7799999996 999999999997544334456899999
Q ss_pred CCCCCcCCChhhhhhcc
Q 046073 75 GVGRRICPDLPLDITML 91 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~ 91 (93)
|+|+|+|+|++||++|+
T Consensus 437 saGpR~CiG~~fA~lem 453 (497)
T KOG0157|consen 437 SAGPRNCIGQKFAMLEM 453 (497)
T ss_pred CCCcccchhHHHHHHHH
Confidence 99999999999999986
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=3.5e-30 Score=177.09 Aligned_cols=87 Identities=37% Similarity=0.620 Sum_probs=79.4
Q ss_pred CeeecccCCCcccccceeecCCceE-ecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEI-IGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFG 75 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i-~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg 75 (93)
|+|+||++|+++..++|.+.+|+++ +|+.||+|+.|. ++|+||++|+||++|+||||++.. ....++|||
T Consensus 349 i~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg 423 (482)
T PTZ00404 349 IKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFS 423 (482)
T ss_pred HHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccC
Confidence 5799999999997678999999999 999999999999 789999999999999999998642 345899999
Q ss_pred CCCCcCCChhhhhhccC
Q 046073 76 VGRRICPDLPLDITMLY 92 (93)
Q Consensus 76 ~G~r~C~G~~~a~~e~~ 92 (93)
.|+|.|+|+++|++|+.
T Consensus 424 ~G~R~C~G~~~A~~e~~ 440 (482)
T PTZ00404 424 IGPRNCVGQQFAQDELY 440 (482)
T ss_pred CCCCCCccHHHHHHHHH
Confidence 99999999999999873
No 9
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=4.7e-30 Score=178.97 Aligned_cols=92 Identities=30% Similarity=0.582 Sum_probs=81.5
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccc--cCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDF--IGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~--~~~~~~~~~f 74 (93)
|+|+||++|+++..++|.+.+|++++|+.||||+.|. ++|+|+++|+||++|+||||+++..+. ...++.++||
T Consensus 393 i~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pF 472 (543)
T PLN02971 393 IREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISF 472 (543)
T ss_pred HHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCC
Confidence 5899999999998778999999999999999999999 899999999999999999999754221 1235679999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|.|+|++||++|++
T Consensus 473 G~G~R~C~G~~lA~~e~~ 490 (543)
T PLN02971 473 STGKRGCAAPALGTAITT 490 (543)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 999999999999999874
No 10
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.96 E-value=4.6e-30 Score=177.21 Aligned_cols=92 Identities=38% Similarity=0.738 Sum_probs=81.1
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcc--ccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVD--FIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~--~~~~~~~~~~f 74 (93)
|+|+||++|+++...+|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+||||++.+.. .......++||
T Consensus 359 i~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pF 438 (503)
T PLN02394 359 VKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPF 438 (503)
T ss_pred HHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCC
Confidence 5899999999999778999999999999999999999 89999999999999999999865432 12235579999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|+|+|+++|++|+.
T Consensus 439 g~G~R~CiG~~~A~~e~~ 456 (503)
T PLN02394 439 GVGRRSCPGIILALPILG 456 (503)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 999999999999999974
No 11
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=1.1e-29 Score=175.23 Aligned_cols=92 Identities=42% Similarity=0.869 Sum_probs=80.6
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCcc--ccCCCccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVD--FIGRNFESIP 73 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~--~~~~~~~~~~ 73 (93)
|+|+||++|+++..++|.+.+|++++|+.||+|+.|. .+|+|+++| +||++|+||||+++... .......++|
T Consensus 354 i~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~p 433 (499)
T PLN03234 354 IKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLP 433 (499)
T ss_pred HHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeC
Confidence 5799999999998667999999999999999999999 789999999 89999999999875432 1234567999
Q ss_pred cCCCCCcCCChhhhhhccC
Q 046073 74 FGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 74 fg~G~r~C~G~~~a~~e~~ 92 (93)
||.|+|.|+|+++|++|+.
T Consensus 434 FG~G~R~C~G~~~A~~e~~ 452 (499)
T PLN03234 434 FGSGRRMCPAMHLGIAMVE 452 (499)
T ss_pred CCCCCCCCCChHHHHHHHH
Confidence 9999999999999998873
No 12
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=1.6e-29 Score=172.90 Aligned_cols=87 Identities=38% Similarity=0.592 Sum_probs=78.8
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|+||++|+++. ++|.+.+|++++||.||+|+.|. ++|+|+++|+||++|+||||++... .+..++|||.
T Consensus 321 i~E~lRl~p~~~~-~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~ 395 (452)
T PLN03141 321 ITETLRMGNIING-VMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGG 395 (452)
T ss_pred HHHHHhccCCcCC-cceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCC
Confidence 5899999999875 67999999999999999999999 8899999999999999999997532 2457999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|+.||++|+.
T Consensus 396 G~R~C~G~~lA~~el~ 411 (452)
T PLN03141 396 GQRLCPGLDLARLEAS 411 (452)
T ss_pred CCCCCChHHHHHHHHH
Confidence 9999999999999874
No 13
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=1.9e-29 Score=173.04 Aligned_cols=88 Identities=30% Similarity=0.503 Sum_probs=78.1
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|+||++|+++. +.|.+.+|++++|+.||||+.|. ++|+|+++|+||++|+||||++.+.. . ...++|||+
T Consensus 333 ikE~lRl~P~v~~-~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~--~-~~~~lpFG~ 408 (463)
T PLN02774 333 IFETSRLATIVNG-VLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE--S-HNYFFLFGG 408 (463)
T ss_pred HHHHHhcCCCCCC-cccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC--C-CccccCcCC
Confidence 5899999999986 56999999999999999999999 89999999999999999999864421 1 236899999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|+++|.+|+.
T Consensus 409 G~r~C~G~~~A~~e~~ 424 (463)
T PLN02774 409 GTRLCPGKELGIVEIS 424 (463)
T ss_pred CCCcCCcHHHHHHHHH
Confidence 9999999999999874
No 14
>PLN00168 Cytochrome P450; Provisional
Probab=99.95 E-value=1.9e-29 Score=174.97 Aligned_cols=92 Identities=42% Similarity=0.756 Sum_probs=80.5
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcc-----ccCCCccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVD-----FIGRNFES 71 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~-----~~~~~~~~ 71 (93)
|+|+||++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||++.... .....+.+
T Consensus 373 i~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~ 452 (519)
T PLN00168 373 VLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRM 452 (519)
T ss_pred HHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcce
Confidence 5799999999988778999999999999999999999 88999999999999999999864321 11234579
Q ss_pred cccCCCCCcCCChhhhhhccC
Q 046073 72 IPFGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 72 ~~fg~G~r~C~G~~~a~~e~~ 92 (93)
+|||.|+|.|+|++||.+|+.
T Consensus 453 ~pFG~G~R~C~G~~lA~~e~~ 473 (519)
T PLN00168 453 MPFGVGRRICAGLGIAMLHLE 473 (519)
T ss_pred eCCCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999974
No 15
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.95 E-value=2.9e-29 Score=173.79 Aligned_cols=92 Identities=40% Similarity=0.776 Sum_probs=80.6
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccC---CCccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIG---RNFESIP 73 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~---~~~~~~~ 73 (93)
|+|+||++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||+++...... ..+.++|
T Consensus 355 i~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~p 434 (504)
T PLN00110 355 CKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIP 434 (504)
T ss_pred HHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeC
Confidence 5899999999998778999999999999999999998 88999999999999999999865422111 2357999
Q ss_pred cCCCCCcCCChhhhhhccC
Q 046073 74 FGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 74 fg~G~r~C~G~~~a~~e~~ 92 (93)
||.|+|.|+|++||++|+.
T Consensus 435 FG~G~R~C~G~~~A~~e~~ 453 (504)
T PLN00110 435 FGAGRRICAGTRMGIVLVE 453 (504)
T ss_pred CCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999874
No 16
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.95 E-value=3.5e-29 Score=173.32 Aligned_cols=91 Identities=23% Similarity=0.477 Sum_probs=77.1
Q ss_pred CeeecccCCCcccccceeecCCce-EecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCcccc-CCCccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGE-IIGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVDFI-GRNFESIP 73 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~-i~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~~~-~~~~~~~~ 73 (93)
|+|+||++|+++.. .|.+.+|.+ ++|+.||+|+.|. ++|||+++| +||++|+||||++++.... ..++.|+|
T Consensus 361 i~EtLRl~P~vp~~-~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lP 439 (500)
T PLN02169 361 LSESMRLYPPLPFN-HKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMA 439 (500)
T ss_pred HHHHHhcCCCCCcC-ceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccC
Confidence 57999999999985 476666655 4899999999998 899999999 8999999999997543322 23568999
Q ss_pred cCCCCCcCCChhhhhhccC
Q 046073 74 FGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 74 fg~G~r~C~G~~~a~~e~~ 92 (93)
||+|+|+|+|++||++|+.
T Consensus 440 FG~GpR~CiG~~~A~~e~k 458 (500)
T PLN02169 440 FNSGPRTCLGKHLALLQMK 458 (500)
T ss_pred CCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999874
No 17
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.95 E-value=5.8e-29 Score=172.53 Aligned_cols=92 Identities=49% Similarity=0.857 Sum_probs=80.9
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccc----cCCCcccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDF----IGRNFESI 72 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~----~~~~~~~~ 72 (93)
|+|+||++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||++.+... ...+..++
T Consensus 363 i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~ 442 (517)
T PLN02687 363 IKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELI 442 (517)
T ss_pred HHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeC
Confidence 5799999999998778999999999999999999999 899999999999999999998754211 12345789
Q ss_pred ccCCCCCcCCChhhhhhccC
Q 046073 73 PFGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 73 ~fg~G~r~C~G~~~a~~e~~ 92 (93)
|||.|+|.|+|++||++|+.
T Consensus 443 pFG~G~r~C~G~~~A~~e~~ 462 (517)
T PLN02687 443 PFGAGRRICAGLSWGLRMVT 462 (517)
T ss_pred CCCCCCCCCCChHHHHHHHH
Confidence 99999999999999999874
No 18
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.95 E-value=2.8e-29 Score=173.90 Aligned_cols=91 Identities=30% Similarity=0.410 Sum_probs=76.8
Q ss_pred CeeecccCCCcccccceeecCCceE-ecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCccccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEI-IGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVDFIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i-~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~~~~~~~~~~~f 74 (93)
|+|+||++|+++.. .|.+.+|..+ +|+.||+|+.|. ++|+|+++| +||++|+||||++++......++.++||
T Consensus 378 i~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pF 456 (516)
T PLN03195 378 ITETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAF 456 (516)
T ss_pred HHHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEecc
Confidence 58999999999995 4666666655 899999999997 899999999 9999999999996432122345579999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|+|+|++||++|+.
T Consensus 457 G~G~R~CiG~~lA~~e~~ 474 (516)
T PLN03195 457 QAGPRICLGKDSAYLQMK 474 (516)
T ss_pred CCCCCcCcCHHHHHHHHH
Confidence 999999999999999974
No 19
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=4.7e-29 Score=172.74 Aligned_cols=88 Identities=33% Similarity=0.547 Sum_probs=78.6
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCccccCCCccccccC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVDFIGRNFESIPFG 75 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~~~~~~~~~~~fg 75 (93)
|+|+||++|+++. ++|.+.+|++++|+.||+|+.|. ++|+|+++| +||++|+||||++... .....++|||
T Consensus 381 i~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG 456 (516)
T PLN02290 381 INESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFA 456 (516)
T ss_pred HHHHHHcCCCccc-cceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCC
Confidence 5899999999987 78999999999999999999998 899999999 8999999999995321 1234789999
Q ss_pred CCCCcCCChhhhhhccC
Q 046073 76 VGRRICPDLPLDITMLY 92 (93)
Q Consensus 76 ~G~r~C~G~~~a~~e~~ 92 (93)
.|+|.|+|+++|++|++
T Consensus 457 ~G~R~C~G~~lA~~el~ 473 (516)
T PLN02290 457 AGPRNCIGQAFAMMEAK 473 (516)
T ss_pred CCCCCCccHHHHHHHHH
Confidence 99999999999999874
No 20
>PLN02655 ent-kaurene oxidase
Probab=99.95 E-value=1.2e-28 Score=169.15 Aligned_cols=91 Identities=27% Similarity=0.615 Sum_probs=80.6
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|+||++|+++...+|.+.+|++++|+.||+|+.|+ ++|+|+++|+||++|+|+||++..... ...+.++|||.
T Consensus 327 i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~ 405 (466)
T PLN02655 327 FHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYES-ADMYKTMAFGA 405 (466)
T ss_pred HHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCccc-CCcccccCCCC
Confidence 5799999999998668999999999999999999999 899999999999999999999754321 22357999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|++||.+|+.
T Consensus 406 G~r~C~G~~~A~~~~~ 421 (466)
T PLN02655 406 GKRVCAGSLQAMLIAC 421 (466)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 9999999999999873
No 21
>PLN03018 homomethionine N-hydroxylase
Probab=99.95 E-value=1.6e-28 Score=171.28 Aligned_cols=92 Identities=26% Similarity=0.536 Sum_probs=80.5
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccc-----cCCCccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDF-----IGRNFES 71 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~-----~~~~~~~ 71 (93)
|+|+||++|+++...+|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||++.+... ...+..+
T Consensus 380 i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~ 459 (534)
T PLN03018 380 CRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRF 459 (534)
T ss_pred HHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCc
Confidence 5799999999998667999999999999999999999 889999999999999999998644211 1234579
Q ss_pred cccCCCCCcCCChhhhhhccC
Q 046073 72 IPFGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 72 ~~fg~G~r~C~G~~~a~~e~~ 92 (93)
+|||.|+|.|+|+++|++|+.
T Consensus 460 lpFG~G~R~C~G~~lA~~e~~ 480 (534)
T PLN03018 460 VSFSTGRRGCVGVKVGTIMMV 480 (534)
T ss_pred cCCCCCCCCCccHHHHHHHHH
Confidence 999999999999999999874
No 22
>PLN02738 carotene beta-ring hydroxylase
Probab=99.95 E-value=2.2e-28 Score=173.20 Aligned_cols=91 Identities=27% Similarity=0.499 Sum_probs=79.7
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCc--cccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDV--DFIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~--~~~~~~~~~~~f 74 (93)
|+|+||++|+++. +.|.+.+|.+++|+.||+|+.|. .+|+|+++|+||++|+||||+.+.. .....+..++||
T Consensus 456 IkEtLRL~p~~p~-~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpF 534 (633)
T PLN02738 456 INESLRLYPQPPV-LIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPF 534 (633)
T ss_pred HHHHHhcCCCccc-cceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCC
Confidence 5899999999998 56889999999999999999999 8999999999999999999985321 112345679999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|.|+|++||++||+
T Consensus 535 G~G~R~CiG~~lA~~El~ 552 (633)
T PLN02738 535 GGGPRKCVGDMFASFENV 552 (633)
T ss_pred CCCCCCCcCHHHHHHHHH
Confidence 999999999999999985
No 23
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.95 E-value=2.8e-28 Score=168.94 Aligned_cols=91 Identities=32% Similarity=0.497 Sum_probs=78.6
Q ss_pred CeeecccCCCcccccceeecCCceE-ecEEeCCCCeEE----eeccCCCCC-CCCCCcccCcccCCCccccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEI-IGFIVPKGARVL----ATSRDESTW-DHAHSFMPIRFLGSDVDFIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i-~g~~ip~g~~v~----~~~~~~~~~-~~~~~f~p~R~~~~~~~~~~~~~~~~~f 74 (93)
|+|+||++|+++.. .|.+.+|.++ +|+.||+|+.|. ++|+|+++| +||++|+||||+++.......++.++||
T Consensus 360 i~EtLRl~p~v~~~-~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pF 438 (502)
T PLN02426 360 LYESMRLFPPVQFD-SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVF 438 (502)
T ss_pred HHHHHhCCCCCCCc-ceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCC
Confidence 58999999999985 4888988887 899999999999 889999999 9999999999987432112345578999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|.|+|+++|++|+.
T Consensus 439 g~G~R~CiG~~~A~~e~~ 456 (502)
T PLN02426 439 QAGLRVCLGKEMALMEMK 456 (502)
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 999999999999999873
No 24
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.94 E-value=5.1e-28 Score=167.51 Aligned_cols=92 Identities=35% Similarity=0.763 Sum_probs=79.4
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCc---cc-cCCCcccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDV---DF-IGRNFESI 72 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~---~~-~~~~~~~~ 72 (93)
|+|++|++|+++..++|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||.+... .. ......++
T Consensus 362 i~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~ 441 (514)
T PLN03112 362 VRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKIL 441 (514)
T ss_pred HHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCccee
Confidence 5799999999998678999999999999999999998 8999999999999999999765321 11 12245799
Q ss_pred ccCCCCCcCCChhhhhhccC
Q 046073 73 PFGVGRRICPDLPLDITMLY 92 (93)
Q Consensus 73 ~fg~G~r~C~G~~~a~~e~~ 92 (93)
|||.|+|.|+|++||.+|+.
T Consensus 442 pFg~G~R~C~G~~~A~~e~~ 461 (514)
T PLN03112 442 PFSAGKRKCPGAPLGVTMVL 461 (514)
T ss_pred CCCCCCCCCCcHHHHHHHHH
Confidence 99999999999999999874
No 25
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.94 E-value=3.1e-28 Score=167.11 Aligned_cols=86 Identities=29% Similarity=0.497 Sum_probs=77.8
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|+||++|++++. .|.+.+|+.++|+.||+|+.|. ++|+|+++|+||++|+||||++.. .+..++|||.
T Consensus 333 i~EtlRl~p~~~~~-~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~ 406 (463)
T PLN02196 333 IQETLRVASILSFT-FREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGN 406 (463)
T ss_pred HHHHHhcCCCcccc-ceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCC
Confidence 58999999999884 5999999999999999999999 789999999999999999998632 3457999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|+++|++|+.
T Consensus 407 G~r~C~G~~~A~~e~~ 422 (463)
T PLN02196 407 GTHSCPGNELAKLEIS 422 (463)
T ss_pred CCCCCchHHHHHHHHH
Confidence 9999999999999874
No 26
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=3.5e-28 Score=166.48 Aligned_cols=89 Identities=31% Similarity=0.538 Sum_probs=80.6
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|||++|++|.++. ..|+..+|..++||.|||||.|. .+.+|+++|++|++|+|+||++..- ....+..++|||.
T Consensus 383 IKEtlRlyPv~~~-~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGf 460 (519)
T KOG0159|consen 383 IKETLRLYPVVPG-NGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGF 460 (519)
T ss_pred HHhhhceeccccc-cccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCC
Confidence 6999999999998 56999999999999999999885 6778899999999999999998663 3456788999999
Q ss_pred CCCcCCChhhhhhcc
Q 046073 77 GRRICPDLPLDITML 91 (93)
Q Consensus 77 G~r~C~G~~~a~~e~ 91 (93)
|+|+|+|++||++||
T Consensus 461 G~R~C~GRRiAElEl 475 (519)
T KOG0159|consen 461 GPRMCLGRRIAELEL 475 (519)
T ss_pred CccccchHHHHHHHH
Confidence 999999999999997
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.94 E-value=5.9e-28 Score=165.95 Aligned_cols=87 Identities=30% Similarity=0.490 Sum_probs=78.3
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|++|++|+++. ..|.+.+|++++|+.||+|+.|. ++|+|+++|+||++|+|+||++.. ..+..++|||.
T Consensus 357 i~E~lRl~p~~~~-~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~ 431 (490)
T PLN02302 357 IDETLRLINISLT-VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGL 431 (490)
T ss_pred HHHHHHhCCCccc-chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCC
Confidence 5799999999988 56999999999999999999998 889999999999999999998643 23457899999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|++||.+|+.
T Consensus 432 G~r~C~G~~lA~~e~~ 447 (490)
T PLN02302 432 GSRLCPGNDLAKLEIS 447 (490)
T ss_pred CCcCCCcHHHHHHHHH
Confidence 9999999999999874
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=2e-27 Score=163.75 Aligned_cols=90 Identities=32% Similarity=0.483 Sum_probs=79.0
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
++|+||++|+++. +.|.+.+|++++|+.||+|+.|. .+|+|+++|+||++|+|+||++.... ......++|||.
T Consensus 336 i~EtLRl~p~~~~-~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~ 413 (472)
T PLN02987 336 VNETLRVANIIGG-IFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGG 413 (472)
T ss_pred HHHHHHccCCcCC-ccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCC
Confidence 5799999999886 67999999999999999999998 78999999999999999999865422 223457999999
Q ss_pred CCCcCCChhhhhhccC
Q 046073 77 GRRICPDLPLDITMLY 92 (93)
Q Consensus 77 G~r~C~G~~~a~~e~~ 92 (93)
|+|.|+|++||.+|+.
T Consensus 414 G~r~C~G~~lA~~e~~ 429 (472)
T PLN02987 414 GPRLCPGYELARVALS 429 (472)
T ss_pred CCcCCCcHHHHHHHHH
Confidence 9999999999999873
No 29
>PLN02936 epsilon-ring hydroxylase
Probab=99.94 E-value=2.8e-27 Score=163.35 Aligned_cols=92 Identities=28% Similarity=0.465 Sum_probs=78.4
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcc--ccCCCcccccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVD--FIGRNFESIPF 74 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~--~~~~~~~~~~f 74 (93)
|+|+||++|+++...+|.+.+|+.++|+.||+|+.|. ++|+|+++|+||++|+|+||+..+.. ....+..++||
T Consensus 343 i~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pF 422 (489)
T PLN02936 343 INESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPF 422 (489)
T ss_pred HHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCC
Confidence 5799999999988776777778888999999999999 88999999999999999999864321 12234579999
Q ss_pred CCCCCcCCChhhhhhccC
Q 046073 75 GVGRRICPDLPLDITMLY 92 (93)
Q Consensus 75 g~G~r~C~G~~~a~~e~~ 92 (93)
|.|+|.|+|++||++|+.
T Consensus 423 g~G~R~C~G~~la~~~~~ 440 (489)
T PLN02936 423 SGGPRKCVGDQFALLEAI 440 (489)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 999999999999999873
No 30
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=3.4e-27 Score=160.33 Aligned_cols=80 Identities=41% Similarity=0.668 Sum_probs=75.9
Q ss_pred CeeecccCCCcccccceeecCCceEecEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCccccccCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIGFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESIPFGV 76 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~~fg~ 76 (93)
|+|+||++|+++. +.|.+.+|++++|+.||+|+.|. +.|||+++|++|++|+|+||. ..+++||+
T Consensus 286 v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~ 354 (411)
T COG2124 286 VEETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGG 354 (411)
T ss_pred HHHHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCC
Confidence 5799999999999 88999999999999999999999 899999999999999999985 47899999
Q ss_pred CCCcCCChhhhhhcc
Q 046073 77 GRRICPDLPLDITML 91 (93)
Q Consensus 77 G~r~C~G~~~a~~e~ 91 (93)
|+|.|+|..||++|+
T Consensus 355 G~H~ClG~~lA~~E~ 369 (411)
T COG2124 355 GPHRCLGAALARLEL 369 (411)
T ss_pred CCccccCHHHHHHHH
Confidence 999999999999986
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.6e-26 Score=156.18 Aligned_cols=90 Identities=36% Similarity=0.637 Sum_probs=79.1
Q ss_pred CeeecccCCCcccccceeecCCceEec----EEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCcccc----CCC
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEIIG----FIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFI----GRN 68 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~g----~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~----~~~ 68 (93)
|+||+||++|.+. +.|.+.+|.++.+ |.||+|..|. ..|+||++|+||+.|+|+||++++++.+ .-.
T Consensus 340 IkEtLRL~~p~~~-~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~ 418 (486)
T KOG0684|consen 340 IKETLRLHPPAHS-LMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLD 418 (486)
T ss_pred HHHHHhcCCchhh-HHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccccccc
Confidence 6899999999888 4599999999976 9999999998 7899999999999999999997775531 124
Q ss_pred ccccccCCCCCcCCChhhhhhcc
Q 046073 69 FESIPFGVGRRICPDLPLDITML 91 (93)
Q Consensus 69 ~~~~~fg~G~r~C~G~~~a~~e~ 91 (93)
+.+||||+|.|.|+|+.||.+||
T Consensus 419 yy~mpfGaGr~~CpGr~FA~~eI 441 (486)
T KOG0684|consen 419 YYYMPFGAGRHRCPGRSFAYLEI 441 (486)
T ss_pred ccccccCCCcCCCCchHHHHHHH
Confidence 55799999999999999999986
No 32
>PLN02648 allene oxide synthase
Probab=99.89 E-value=4.7e-24 Score=147.42 Aligned_cols=87 Identities=28% Similarity=0.555 Sum_probs=72.3
Q ss_pred CeeecccCCCcccccceeecCCceEe----cEEeCCCCeEE----eeccCCCCCCCCCCcccCcccCCCccccCCCcccc
Q 046073 1 VKETFRLHPPIPLLLSRKASEDGEII----GFIVPKGARVL----ATSRDESTWDHAHSFMPIRFLGSDVDFIGRNFESI 72 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~~~~~~i~----g~~ip~g~~v~----~~~~~~~~~~~~~~f~p~R~~~~~~~~~~~~~~~~ 72 (93)
|+|+||++|+++.. .|.+.+|++++ |+.||+|+.|. .+|+|+++|+||++|+|+||++.... ....++
T Consensus 340 i~EtLRl~p~v~~~-~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~ 415 (480)
T PLN02648 340 VYEALRIEPPVPFQ-YGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYV 415 (480)
T ss_pred HHHHHhhcCCcccc-cceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---cccccc
Confidence 57999999999984 58899999996 79999999998 78999999999999999999864322 112334
Q ss_pred cc---------CCCCCcCCChhhhhhcc
Q 046073 73 PF---------GVGRRICPDLPLDITML 91 (93)
Q Consensus 73 ~f---------g~G~r~C~G~~~a~~e~ 91 (93)
+| |+|+|.|+|++||++|+
T Consensus 416 ~f~~g~~~~~~G~G~R~C~G~~~A~~e~ 443 (480)
T PLN02648 416 FWSNGRETESPTVGNKQCAGKDFVVLVA 443 (480)
T ss_pred ccCCCcccCCCCCCCccCccHHHHHHHH
Confidence 44 67789999999999987
No 33
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=85.27 E-value=1.9 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=26.8
Q ss_pred eecCCceEecEEeCCCCeEE-----------eeccCCCCCCCCCCcccC
Q 046073 18 KASEDGEIIGFIVPKGARVL-----------ATSRDESTWDHAHSFMPI 55 (93)
Q Consensus 18 ~~~~~~~i~g~~ip~g~~v~-----------~~~~~~~~~~~~~~f~p~ 55 (93)
...+|+.|+|..||+|+.-+ .++.+..+|-. ..++++
T Consensus 51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~ 98 (145)
T PF11138_consen 51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPS 98 (145)
T ss_pred EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCch
Confidence 34679999999999998876 56777777744 334443
No 34
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=74.44 E-value=1.2 Score=26.01 Aligned_cols=29 Identities=41% Similarity=0.622 Sum_probs=22.1
Q ss_pred eecCCceEecEEeCCCCeEE-eeccCCCCC
Q 046073 18 KASEDGEIIGFIVPKGARVL-ATSRDESTW 46 (93)
Q Consensus 18 ~~~~~~~i~g~~ip~g~~v~-~~~~~~~~~ 46 (93)
.+..|..+.|-.||+|++|+ .-..|+.+|
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~k~~ddelW 101 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGVKITDDELW 101 (122)
T ss_pred ecCCCcccCCeeecceEEEEEEEecCHHHH
Confidence 45668899999999999998 334455666
No 35
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=73.37 E-value=4.3 Score=25.79 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.2
Q ss_pred eecCCceEecEEeCCCCeEE
Q 046073 18 KASEDGEIIGFIVPKGARVL 37 (93)
Q Consensus 18 ~~~~~~~i~g~~ip~g~~v~ 37 (93)
...+|+.++|..||+|+.+.
T Consensus 74 RLle~i~i~g~~IPkgt~l~ 93 (200)
T PF12508_consen 74 RLLEDIQIGGILIPKGTYLY 93 (200)
T ss_pred EEcCceEECCEEeCCCCEEE
Confidence 34578899999999999997
No 36
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=68.15 E-value=4.3 Score=20.68 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=6.0
Q ss_pred ccCcccCC
Q 046073 53 MPIRFLGS 60 (93)
Q Consensus 53 ~p~R~~~~ 60 (93)
|||||+.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 78888863
No 37
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=55.66 E-value=3.5 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=22.7
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCChh
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDLP 85 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~ 85 (93)
.+|+|++|-.-=-....+....+.|..|+=.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 357777773211111224457899999999999853
No 38
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=54.17 E-value=2.9 Score=25.91 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
-+|+|++|-.---....+....+-|..|+=.|-|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 46888887432222223445788999999999985
No 39
>PRK00394 transcription factor; Reviewed
Probab=46.12 E-value=5.3 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCC
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPD 83 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G 83 (93)
-+|+|++|-.---....+....+-|..|+=.|-|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4688888743222222344578899999999998
No 40
>PRK06789 flagellar motor switch protein; Validated
Probab=45.41 E-value=11 Score=20.16 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=23.9
Q ss_pred eeecccCCCcccccceeecCC--ceEecEEeCCCCeEE
Q 046073 2 KETFRLHPPIPLLLSRKASED--GEIIGFIVPKGARVL 37 (93)
Q Consensus 2 ~E~lRl~~~~~~~~~r~~~~~--~~i~g~~ip~g~~v~ 37 (93)
+|-+.+.+..-..+-+.+.+. +.++|..|.+|+.|.
T Consensus 23 ~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVv 60 (74)
T PRK06789 23 EDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILT 60 (74)
T ss_pred HHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEE
Confidence 455666666555555555554 455799999998775
No 41
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=42.20 E-value=28 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.2
Q ss_pred ecCCceEecEEeCCCCeEE
Q 046073 19 ASEDGEIIGFIVPKGARVL 37 (93)
Q Consensus 19 ~~~~~~i~g~~ip~g~~v~ 37 (93)
..+|+.++|..||+|+.+.
T Consensus 278 Lle~~~v~~~~ipkgt~l~ 296 (410)
T TIGR03779 278 LLEPIQAGDLVIPKGTVLY 296 (410)
T ss_pred EcCceeeCCEEecCCCEEE
Confidence 3467888999999999997
No 42
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=40.59 E-value=6.3 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
-+|+|++|-.---....+....+-|+.|+=.|-|.
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGa 63 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGA 63 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEec
Confidence 46788877432212223445688999999999883
No 43
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=38.49 E-value=15 Score=18.37 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=8.7
Q ss_pred cccCCCCCcCC
Q 046073 72 IPFGVGRRICP 82 (93)
Q Consensus 72 ~~fg~G~r~C~ 82 (93)
-+||-|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 36889999884
No 44
>PLN00062 TATA-box-binding protein; Provisional
Probab=38.02 E-value=6.6 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
-+|+|++|-.---....+....+-|..|+=.|-|.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 46888877432111222344688999999999884
No 45
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=37.78 E-value=22 Score=22.94 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.3
Q ss_pred eccCCCCCCCCCCcccCc
Q 046073 39 TSRDESTWDHAHSFMPIR 56 (93)
Q Consensus 39 ~~~~~~~~~~~~~f~p~R 56 (93)
-+.|+..|.|...|+|-|
T Consensus 194 ~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 194 DNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCcccccCccccCCCC
Confidence 478888999999999876
No 46
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=36.75 E-value=4 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=21.4
Q ss_pred CcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 51 SFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 51 ~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
+|+|++|-.-.-.........+-|..|+=.|.|.
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 5777776321111222345678899999988885
No 47
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=34.87 E-value=16 Score=15.86 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=3.1
Q ss_pred cccCcc
Q 046073 52 FMPIRF 57 (93)
Q Consensus 52 f~p~R~ 57 (93)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 345554
No 48
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=32.27 E-value=9.5 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCcccCcccCCCccccCCCccccccCCCCCcCCC
Q 046073 50 HSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPD 83 (93)
Q Consensus 50 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G 83 (93)
-+|+|++|-.---....+....+-|..|+=.|-|
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 4678887742111122234467899999999988
No 49
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=32.13 E-value=13 Score=23.70 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCCcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 49 AHSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 49 ~~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
-.+|+|.|+..---....+......|.+|+=.|-|.
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 356888887532212223344567899999999974
No 50
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=28.86 E-value=53 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=15.9
Q ss_pred ccCCCCCCCCCCccc-CcccCCCc
Q 046073 40 SRDESTWDHAHSFMP-IRFLGSDV 62 (93)
Q Consensus 40 ~~~~~~~~~~~~f~p-~R~~~~~~ 62 (93)
--..++|.+|+++.| +|||+...
T Consensus 120 k~g~k~fi~p~KllPl~RFLP~p~ 143 (215)
T KOG3262|consen 120 KPGDKLFIDPDKLLPLDRFLPQPV 143 (215)
T ss_pred cCCCeEEecccccCcHhhcCCCCC
Confidence 345566788888877 58886553
No 51
>PRK05933 type III secretion system protein; Validated
Probab=28.10 E-value=23 Score=24.49 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=25.4
Q ss_pred CeeecccCCCcccccceee-cC--CceEecEEeCCCCeEE
Q 046073 1 VKETFRLHPPIPLLLSRKA-SE--DGEIIGFIVPKGARVL 37 (93)
Q Consensus 1 i~E~lRl~~~~~~~~~r~~-~~--~~~i~g~~ip~g~~v~ 37 (93)
|+|.++|.+...+.+.+.. .+ |+.++|..|.+|+.|.
T Consensus 321 IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVV 360 (372)
T PRK05933 321 VGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIA 360 (372)
T ss_pred HHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEE
Confidence 4567777776665554443 23 5677899999999885
No 52
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=54 Score=19.77 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.5
Q ss_pred ceEecEEeCCCCeEEeeccCCCCCCC
Q 046073 23 GEIIGFIVPKGARVLATSRDESTWDH 48 (93)
Q Consensus 23 ~~i~g~~ip~g~~v~~~~~~~~~~~~ 48 (93)
++|+|..=..|+..+++..++.-|+.
T Consensus 34 vti~glknkqGqic~aVf~s~qgfp~ 59 (151)
T COG4704 34 VTINGLKNKQGQICFAVFASEQGFPM 59 (151)
T ss_pred EEEcchhhccCcEEEEEEeccccCCC
Confidence 56678888889877799999999965
No 53
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=26.01 E-value=33 Score=17.16 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=8.3
Q ss_pred ccCCCCCcCC
Q 046073 73 PFGVGRRICP 82 (93)
Q Consensus 73 ~fg~G~r~C~ 82 (93)
-||-|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 5788999996
No 54
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=25.10 E-value=29 Score=21.10 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=12.2
Q ss_pred ccCCCCCcCCChhh-hhhccC
Q 046073 73 PFGVGRRICPDLPL-DITMLY 92 (93)
Q Consensus 73 ~fg~G~r~C~G~~~-a~~e~~ 92 (93)
+|- -+|.|+|+++ --+++|
T Consensus 124 ~FK-kPRs~LgMHMLeSVQVF 143 (150)
T PF15442_consen 124 SFK-KPRSCLGMHMLESVQVF 143 (150)
T ss_pred ccc-CcccccchHHHHhHHhh
Confidence 344 3999999984 444443
No 55
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=23.51 E-value=28 Score=21.09 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=15.2
Q ss_pred ccccccCCCCCcCCChhhhhh
Q 046073 69 FESIPFGVGRRICPDLPLDIT 89 (93)
Q Consensus 69 ~~~~~fg~G~r~C~G~~~a~~ 89 (93)
+.|+- |++.+.||+..+|.+
T Consensus 58 YyYle-gss~~~CP~nE~avV 77 (146)
T PF04798_consen 58 YYYLE-GSSSVFCPPNEFAVV 77 (146)
T ss_pred EEEEe-ccccccCCCCceEEE
Confidence 45667 899999998777654
No 56
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=23.45 E-value=29 Score=20.94 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=6.0
Q ss_pred cCCChhhhhhcc
Q 046073 80 ICPDLPLDITML 91 (93)
Q Consensus 80 ~C~G~~~a~~e~ 91 (93)
+|.|+.||+.++
T Consensus 19 N~~gKKFsE~Qi 30 (148)
T PF09201_consen 19 NCLGKKFSETQI 30 (148)
T ss_dssp ETTS----HHHH
T ss_pred cccchHHHHHHH
Confidence 699999987654
No 57
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=21.84 E-value=17 Score=22.54 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=22.2
Q ss_pred CCCcccCcccCCCccccCCCccccccCCCCCcCCCh
Q 046073 49 AHSFMPIRFLGSDVDFIGRNFESIPFGVGRRICPDL 84 (93)
Q Consensus 49 ~~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 84 (93)
--+|+||+|-.-.-......-..+-|..|+=.|.|.
T Consensus 120 ~~~YePE~fPgliyr~~~p~~t~lIF~sGkivitGa 155 (174)
T cd04517 120 SASYEPELHPGVVYRITGPRATLSIFSTGSVTVTGA 155 (174)
T ss_pred hcEeCCccCCEEEEEECCCcEEEEEeCCCEEEEEec
Confidence 355778876421111122344678999999888874
No 58
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=21.38 E-value=23 Score=14.91 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=3.4
Q ss_pred cccCcc
Q 046073 52 FMPIRF 57 (93)
Q Consensus 52 f~p~R~ 57 (93)
++||||
T Consensus 19 l~PErF 24 (26)
T TIGR02115 19 LRPERF 24 (26)
T ss_pred hCHHhc
Confidence 356665
No 59
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=21.35 E-value=95 Score=13.56 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=11.3
Q ss_pred CccccccCCCCCcCC
Q 046073 68 NFESIPFGVGRRICP 82 (93)
Q Consensus 68 ~~~~~~fg~G~r~C~ 82 (93)
...|+++.+..|.|.
T Consensus 17 ~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 17 DNTYQPYDGPRRFCR 31 (31)
T ss_pred CCcEeCCCCccccCc
Confidence 347899997778884
No 60
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=20.86 E-value=76 Score=18.28 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred eCCCCeEE--eeccCCCCCCCCCCcccCcccCC
Q 046073 30 VPKGARVL--ATSRDESTWDHAHSFMPIRFLGS 60 (93)
Q Consensus 30 ip~g~~v~--~~~~~~~~~~~~~~f~p~R~~~~ 60 (93)
+..|+.+. +..+.++-..||..||-.+|+..
T Consensus 129 l~~Gd~i~~~g~l~~~~~~~Npg~FD~~~yl~~ 161 (176)
T PF13567_consen 129 LQPGDRIRVRGKLKPPSGPTNPGGFDYQRYLRS 161 (176)
T ss_pred cCCCCEEEEEEEEecCCCCCCCCCcCHHHHHHH
Confidence 55677666 44556666678889988888643
No 61
>PHA00672 hypothetical protein
Probab=20.11 E-value=1.2e+02 Score=18.13 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=14.4
Q ss_pred eeecCCceEecEEeCCCCeEE
Q 046073 17 RKASEDGEIIGFIVPKGARVL 37 (93)
Q Consensus 17 r~~~~~~~i~g~~ip~g~~v~ 37 (93)
+.-...+.-....||+|+.+.
T Consensus 41 H~Fs~GvYARei~IPkGt~Lt 61 (152)
T PHA00672 41 HLFHAGVYARTIRIPAGVALT 61 (152)
T ss_pred hhhccceeEEEEeccCceeee
Confidence 334455555677899998887
Done!