BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046075
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPDIRRGRF 71
L KGPWT EEDQK+++ + ++G W + K L G R GK CR RW N+L P++++ +
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 72 SEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126
+EEE+RII H VLGN++ EI LPGRTDN +KN WN+ I++K
Sbjct: 63 TEEEDRIIFEAHKVLGNRW---------AEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 12/116 (10%)
Query: 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPDIRRGR 70
L KGPWT EEDQ++++++ ++G W+ + K L G R GK CR RW N+L P++++
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 81
Query: 71 FSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126
++EEE+RII H LGN++ EI LPGRTDN +KN WN+ +R+K
Sbjct: 82 WTEEEDRIIYQAHKRLGNRW---------AEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 100 bits (250), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 12/114 (10%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPDIRRGRF 71
L KGPWT EEDQ+++ + ++G W+ + K L G R GK CR RW N+L P++++ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 72 SEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125
+EEE+RII H LGN++ EI LPGRTDN IKN WN+ +R+K
Sbjct: 60 TEEEDRIIYQAHKRLGNRW---------AEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 100 bits (248), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 12/114 (10%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPDIRRGRF 71
L KGPWT EEDQ+++ + ++G W+ + K L G R GK CR RW N+L P++++ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 72 SEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125
+EEE+RII H LGN++ EI LPGRTDN IKN WN+ +R+K
Sbjct: 60 TEEEDRIIYQAHKRLGNRW---------AEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 12/116 (10%)
Query: 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPDIRRGR 70
L KGPWT EEDQ+++ + ++G W+ + K L G R GK CR RW N+L P++++
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 112
Query: 71 FSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126
++EEE+RII H LGN++ EI LPGRTDN IKN WN+ +R+K
Sbjct: 113 WTEEEDRIIYQAHKRLGNRW---------AEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGL--NRCGKSCRLRWTNYLRPDIRRGRFS 72
KGP+T ED + +Y+ +G +W P++ NR K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 73 EEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126
EE+ I + LG+K+ I +PGRTDN IKN WN+ I K+
Sbjct: 59 PEEDETIFRNYLKLGSKWSV---------IAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGR 70
++ KK +TPEED+ L + +HG W + NR + CR RW NYL P I
Sbjct: 7 KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64
Query: 71 FSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNT 120
++ EE+ +++ G ++ I PGRTD IKN W T
Sbjct: 65 WTAEEDALLVQKIQEYGRQWAI---------IAKFFPGRTDIHIKNRWVT 105
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 54.3 bits (129), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPD 65
L KGPWT EEDQ+L+ + ++G W+ + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPD 65
L KGPWT EEDQ++++ + ++G W+ + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLRPD 65
L KGPWT EEDQ+++ + ++G W+ + K L G R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 9/60 (15%)
Query: 66 IRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125
+++ ++EEE+RII H LGN++ EI LPGRTDN IKN WN+ +R+K
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRW---------AEIAKLLPGRTDNAIKNHWNSTMRRK 51
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 65 DIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124
++++ ++EEE+RI+ H LGN++ EI LPGRTDN IKN WN+ +R+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRW---------AEIAKLLPGRTDNAIKNHWNSTMRR 52
Query: 125 K 125
K
Sbjct: 53 K 53
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEE 74
K +T EED KL + R+G W + +L + R + CR RW NY+ P +R +S E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 75 EERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFW 118
E+ ++ ++ G K+ +I L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWN---------KISKFLKNRSDNNIRNRW 94
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRW 58
+L+ PW+PEED L +G WN + K NR + R RW
Sbjct: 50 ALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLK-NRSDNNIRNRW 94
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSW----NALPKLAGLNRCGKSCRLRWTNYLRPD 65
L K WT EED+KL + ++G W N LP NR C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-----NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 13 LKKGPWTPEEDQKLVDYIGRHGHGSW----NALPKLAGLNRCGKSCRLRWTNYLRPD 65
L K WT EED+KL + ++G W N LP NR C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-----NRTDVQCQHRWQKVLNPE 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 18 WTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFS 72
W ED+ L + ++G W+ + L + K C+ RW +L P I++ +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 18 WTPEEDQKLVDYIGRHGHGSWNAL 41
WT EED+KL+ + ++G+GSW +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 18 WTPEEDQKLVDYIGRHGHGSWNAL 41
WT EED+KL+ + ++G+GSW +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + + ++G G+W A+ K +NR + RW R
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + + ++G G+W A+ K +NR + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + + ++G G+W A+ K +NR + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + + ++G G+W A+ K +NR + RW R
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 63
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63
KK WT EE + + + ++G G+W A+ K +NR + RW R
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 59
>pdb|2WUX|A Chain A, The Crystal Structure Of Recombinant Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 55 RLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYS 99
R+ W N+ +P + G S EEE I++ + V K F+ + +++
Sbjct: 197 RVIWENFYKPIVYIGTDSAEEEEILLEVSLVFKVKEFAPDAPLFT 241
>pdb|2WUY|A Chain A, The Crystal Structure Of Wild-Type Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 55 RLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYS 99
R+ W N+ +P + G S EEE I++ + V K F+ + +++
Sbjct: 197 RVIWENFYKPIVYIGTDSAEEEEILLEVSLVFKVKEFAPDAPLFT 241
>pdb|3JW6|A Chain A, Crystal Structure Of Acmnpv Baculovirus Polyhedra
Length = 245
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 55 RLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYS 99
R+ W N+ +P + G S EEE I++ + V K F+ + +++
Sbjct: 197 RVIWENFYKPIVYIGTDSAEEEEILLEVSLVFKVKEFAPDAPLFT 241
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62
S S K WT EED++L + + G W L NR + C+ RW L
Sbjct: 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,694,894
Number of Sequences: 62578
Number of extensions: 446929
Number of successful extensions: 1129
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 42
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)