Query 046075
Match_columns 328
No_of_seqs 290 out of 1377
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.3E-34 1.5E-38 232.6 8.3 105 12-126 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 2.3E-33 7.8E-38 237.5 9.1 110 15-134 2-111 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.9E-33 6.4E-38 230.4 7.9 104 15-128 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 4E-33 1.4E-37 234.7 7.4 107 10-126 22-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.6E-32 5.3E-37 231.1 8.7 103 11-124 7-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 6.5E-31 2.2E-35 228.4 7.3 107 10-126 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 9.8E-31 3.3E-35 227.3 4.2 114 12-135 3-117 (159)
8 2dim_A Cell division cycle 5-l 99.8 2E-22 6.8E-27 153.5 1.3 65 11-76 5-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 5.5E-22 1.9E-26 166.6 2.5 86 41-136 1-87 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 2.5E-18 8.6E-23 159.0 6.6 114 11-125 4-200 (246)
11 2roh_A RTBP1, telomere binding 99.7 3.9E-18 1.3E-22 143.8 5.3 88 3-90 19-115 (122)
12 2juh_A Telomere binding protei 99.7 3.2E-18 1.1E-22 144.1 3.6 84 8-91 10-102 (121)
13 2d9a_A B-MYB, MYB-related prot 99.7 5.1E-18 1.7E-22 125.3 2.9 57 10-67 3-59 (60)
14 2llk_A Cyclin-D-binding MYB-li 99.7 1.5E-17 5E-22 128.8 4.6 57 55-121 10-66 (73)
15 1gvd_A MYB proto-oncogene prot 99.7 8.3E-18 2.9E-22 120.8 2.5 52 13-65 1-52 (52)
16 2cu7_A KIAA1915 protein; nucle 99.7 7.4E-17 2.5E-21 123.5 6.8 65 62-136 3-67 (72)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 1.4E-17 4.7E-22 119.6 1.7 52 13-65 1-52 (52)
18 2din_A Cell division cycle 5-l 99.7 1.2E-16 4E-21 120.2 6.8 60 61-130 2-61 (66)
19 1ity_A TRF1; helix-turn-helix, 99.7 2.8E-17 9.5E-22 124.8 2.9 64 9-72 4-68 (69)
20 2dim_A Cell division cycle 5-l 99.6 2E-16 6.9E-21 120.2 5.1 65 63-136 4-69 (70)
21 3sjm_A Telomeric repeat-bindin 99.6 1.1E-16 3.6E-21 120.7 1.4 56 12-67 8-64 (64)
22 2d9a_A B-MYB, MYB-related prot 99.6 5.2E-16 1.8E-20 114.5 4.1 55 63-126 3-58 (60)
23 1x41_A Transcriptional adaptor 99.6 3.5E-16 1.2E-20 115.9 2.6 54 11-65 4-57 (60)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 1.8E-15 6.2E-20 108.4 5.5 50 66-124 1-51 (52)
25 2din_A Cell division cycle 5-l 99.6 1.8E-16 6E-21 119.2 -0.5 57 10-69 4-60 (66)
26 1ity_A TRF1; helix-turn-helix, 99.6 3.4E-15 1.2E-19 113.2 6.3 62 61-131 3-67 (69)
27 1gvd_A MYB proto-oncogene prot 99.6 3.1E-15 1.1E-19 107.3 5.1 50 66-124 1-51 (52)
28 1w0t_A Telomeric repeat bindin 99.6 6.1E-16 2.1E-20 111.7 1.4 49 14-63 1-51 (53)
29 1w0t_A Telomeric repeat bindin 99.5 8E-15 2.7E-19 105.8 5.7 50 67-125 1-53 (53)
30 2elk_A SPCC24B10.08C protein; 99.5 1.9E-15 6.3E-20 111.4 2.1 52 11-62 5-56 (58)
31 2yum_A ZZZ3 protein, zinc fing 99.5 1.4E-15 4.7E-20 116.9 1.0 59 11-70 4-67 (75)
32 1x41_A Transcriptional adaptor 99.5 1.4E-14 4.9E-19 107.1 5.8 53 63-124 3-56 (60)
33 2cu7_A KIAA1915 protein; nucle 99.5 3.6E-15 1.2E-19 114.1 0.8 57 10-68 4-60 (72)
34 2yum_A ZZZ3 protein, zinc fing 99.5 2.5E-14 8.5E-19 109.9 5.2 58 63-129 3-66 (75)
35 3sjm_A Telomeric repeat-bindin 99.5 4.6E-14 1.6E-18 106.2 5.5 52 66-126 9-63 (64)
36 2aje_A Telomere repeat-binding 99.4 3.7E-14 1.3E-18 116.7 3.4 81 8-88 6-95 (105)
37 2elk_A SPCC24B10.08C protein; 99.4 1.4E-13 4.8E-18 101.3 5.9 50 64-122 5-56 (58)
38 2ltp_A Nuclear receptor corepr 99.1 1.2E-14 4.1E-19 115.9 0.0 56 61-125 9-64 (89)
39 2ckx_A NGTRF1, telomere bindin 99.4 5.8E-14 2E-18 111.0 3.9 69 16-85 1-79 (83)
40 2llk_A Cyclin-D-binding MYB-li 99.4 4.3E-14 1.5E-18 109.3 2.6 56 10-69 18-73 (73)
41 3zqc_A MYB3; transcription-DNA 99.4 7.6E-14 2.6E-18 117.6 2.0 63 10-74 49-111 (131)
42 3osg_A MYB21; transcription-DN 99.4 1.3E-13 4.3E-18 115.7 3.3 66 63-137 6-71 (126)
43 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.6E-13 9E-18 109.8 3.7 61 65-134 1-62 (105)
44 2yus_A SWI/SNF-related matrix- 99.3 5.5E-13 1.9E-17 104.3 3.4 49 11-61 14-62 (79)
45 2k9n_A MYB24; R2R3 domain, DNA 99.3 4.5E-13 1.5E-17 109.2 2.3 61 68-137 1-62 (107)
46 2ltp_A Nuclear receptor corepr 99.0 2.3E-13 7.9E-18 108.4 0.0 53 10-64 11-63 (89)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.3E-12 7.8E-17 99.6 4.9 52 63-123 13-68 (73)
48 2yus_A SWI/SNF-related matrix- 99.2 5.3E-12 1.8E-16 98.7 4.3 48 65-121 15-62 (79)
49 2ckx_A NGTRF1, telomere bindin 99.2 2.4E-11 8.3E-16 96.0 6.4 49 69-126 1-54 (83)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.5E-12 1.5E-16 97.9 1.6 52 11-63 14-68 (73)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 8.1E-12 2.8E-16 115.7 3.3 67 64-134 4-70 (246)
52 1x58_A Hypothetical protein 49 99.2 3.3E-11 1.1E-15 90.3 5.4 49 67-124 7-58 (62)
53 2cjj_A Radialis; plant develop 99.1 5.4E-11 1.9E-15 95.8 6.7 58 67-133 7-69 (93)
54 2aje_A Telomere repeat-binding 99.1 5.2E-11 1.8E-15 97.9 6.4 54 63-125 8-66 (105)
55 2juh_A Telomere binding protei 99.1 3.9E-11 1.3E-15 101.0 5.2 56 62-126 11-71 (121)
56 2roh_A RTBP1, telomere binding 99.1 1.8E-10 6.1E-15 97.1 6.4 54 64-126 27-85 (122)
57 3hm5_A DNA methyltransferase 1 98.9 1.9E-09 6.6E-14 86.8 6.5 67 51-130 17-88 (93)
58 2cjj_A Radialis; plant develop 98.9 3.5E-10 1.2E-14 91.1 0.6 48 14-62 7-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.8 6.3E-09 2.1E-13 77.1 5.4 47 67-122 11-57 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 7.1E-09 2.4E-13 79.7 4.6 57 65-131 5-65 (72)
61 1x58_A Hypothetical protein 49 98.7 5E-09 1.7E-13 78.5 2.2 50 12-63 5-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 1.5E-08 5.2E-13 75.0 2.6 49 11-61 8-56 (61)
63 2iw5_B Protein corest, REST co 98.5 5.6E-08 1.9E-12 89.5 5.2 49 67-124 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.4E-08 8.4E-13 76.7 0.7 50 11-62 4-56 (72)
65 1fex_A TRF2-interacting telome 98.4 3.8E-08 1.3E-12 72.9 1.1 48 15-63 2-58 (59)
66 1fex_A TRF2-interacting telome 98.2 2.7E-06 9.3E-11 62.8 6.0 56 68-123 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.1 1.1E-06 3.9E-11 88.5 4.4 45 69-122 381-425 (482)
68 1wgx_A KIAA1903 protein; MYB D 98.1 2.1E-06 7.3E-11 66.2 4.6 50 68-122 8-57 (73)
69 2iw5_B Protein corest, REST co 98.1 5.8E-07 2E-11 82.7 1.5 50 12-63 130-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.1 6.3E-07 2.2E-11 69.2 1.2 48 15-63 8-58 (73)
71 1ug2_A 2610100B20RIK gene prod 97.9 1.6E-05 5.4E-10 63.7 5.2 46 70-124 35-83 (95)
72 2yqk_A Arginine-glutamic acid 97.7 5.6E-05 1.9E-09 56.2 6.2 49 63-120 4-53 (63)
73 2lr8_A CAsp8-associated protei 96.8 6E-06 2E-10 62.8 0.0 44 70-123 16-62 (70)
74 1ofc_X ISWI protein; nuclear p 97.6 9E-05 3.1E-09 70.9 7.7 100 16-125 111-276 (304)
75 4iej_A DNA methyltransferase 1 97.6 0.00017 5.7E-09 58.0 7.3 61 56-129 22-87 (93)
76 4eef_G F-HB80.4, designed hema 97.6 1.6E-05 5.5E-10 61.4 0.9 44 15-59 20-66 (74)
77 4eef_G F-HB80.4, designed hema 97.4 2.9E-05 9.8E-10 60.0 0.8 43 68-119 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.3 9E-05 3.1E-09 55.1 2.2 48 11-60 5-53 (63)
79 2xag_B REST corepressor 1; ami 97.2 9E-05 3.1E-09 74.8 1.5 48 13-62 378-425 (482)
80 4a69_C Nuclear receptor corepr 97.1 0.00055 1.9E-08 54.8 5.4 44 68-120 43-86 (94)
81 3hm5_A DNA methyltransferase 1 97.1 9.2E-05 3.2E-09 59.5 0.6 50 13-63 28-81 (93)
82 2crg_A Metastasis associated p 97.0 0.00093 3.2E-08 50.6 5.6 43 68-119 8-51 (70)
83 2ebi_A DNA binding protein GT- 96.8 0.00015 5.1E-09 56.4 -0.4 49 14-62 3-63 (86)
84 2ebi_A DNA binding protein GT- 96.7 0.0012 4.2E-08 51.2 4.0 61 67-128 3-68 (86)
85 4a69_C Nuclear receptor corepr 96.4 0.00083 2.8E-08 53.7 1.4 43 15-59 43-85 (94)
86 2crg_A Metastasis associated p 96.3 0.0012 4.1E-08 50.0 1.6 45 14-60 7-52 (70)
87 1ug2_A 2610100B20RIK gene prod 96.2 0.003 1E-07 50.6 3.2 48 12-60 30-79 (95)
88 2y9y_A Imitation switch protei 96.0 0.014 4.7E-07 57.3 7.5 103 16-127 124-294 (374)
89 2lr8_A CAsp8-associated protei 94.9 0.0013 4.5E-08 50.0 0.0 48 14-63 13-62 (70)
90 4b4c_A Chromodomain-helicase-D 95.3 0.041 1.4E-06 48.6 7.6 33 12-44 4-38 (211)
91 4b4c_A Chromodomain-helicase-D 95.0 0.019 6.5E-07 50.8 4.2 38 5-43 125-162 (211)
92 1irz_A ARR10-B; helix-turn-hel 93.3 0.27 9.4E-06 36.7 6.9 50 66-121 5-56 (64)
93 4iej_A DNA methyltransferase 1 93.1 0.027 9.3E-07 45.1 1.2 50 13-63 28-81 (93)
94 2xb0_X Chromo domain-containin 92.5 0.058 2E-06 50.7 2.7 28 16-43 169-196 (270)
95 1ofc_X ISWI protein; nuclear p 88.0 0.69 2.3E-05 44.1 5.9 46 69-123 111-157 (304)
96 1irz_A ARR10-B; helix-turn-hel 87.3 0.25 8.6E-06 36.9 1.9 50 11-60 3-55 (64)
97 1u78_A TC3 transposase, transp 54.2 49 0.0017 25.7 7.6 87 17-116 6-98 (141)
98 2rq5_A Protein jumonji; develo 52.2 3.9 0.00013 33.7 0.7 57 25-84 46-113 (121)
99 2xb0_X Chromo domain-containin 51.9 27 0.00094 32.5 6.5 47 68-123 3-54 (270)
100 3cz6_A DNA-binding protein RAP 49.8 13 0.00044 32.6 3.6 25 11-35 110-142 (168)
101 3hug_A RNA polymerase sigma fa 45.8 36 0.0012 25.3 5.3 39 75-123 41-79 (92)
102 2li6_A SWI/SNF chromatin-remod 43.7 4.4 0.00015 32.8 -0.3 39 25-64 53-98 (116)
103 2o8x_A Probable RNA polymerase 41.6 36 0.0012 23.3 4.4 41 74-124 18-58 (70)
104 1ig6_A MRF-2, modulator recogn 38.6 7.4 0.00025 30.8 0.3 40 25-64 37-87 (107)
105 2y9y_A Imitation switch protei 37.9 46 0.0016 32.5 5.8 46 69-122 124-170 (374)
106 1ku3_A Sigma factor SIGA; heli 34.3 55 0.0019 23.1 4.5 41 74-124 13-57 (73)
107 2jrz_A Histone demethylase jar 34.3 6.3 0.00022 31.9 -0.8 40 25-64 44-93 (117)
108 1k78_A Paired box protein PAX5 34.1 1E+02 0.0036 24.4 6.7 67 15-86 30-106 (149)
109 2li6_A SWI/SNF chromatin-remod 32.4 24 0.00081 28.4 2.4 46 78-124 53-98 (116)
110 1c20_A DEAD ringer protein; DN 32.2 6.7 0.00023 32.2 -1.0 40 25-64 56-106 (128)
111 1kkx_A Transcription regulator 31.7 33 0.0011 28.0 3.2 47 78-125 52-98 (123)
112 2p7v_B Sigma-70, RNA polymeras 30.1 51 0.0018 22.9 3.7 41 74-124 8-52 (68)
113 2jrz_A Histone demethylase jar 29.9 45 0.0015 26.8 3.7 46 78-124 44-93 (117)
114 2jxj_A Histone demethylase jar 29.6 9 0.00031 29.6 -0.6 40 25-64 40-89 (96)
115 2eqy_A RBP2 like, jumonji, at 26.9 61 0.0021 26.2 4.0 46 78-124 46-95 (122)
116 1x3u_A Transcriptional regulat 26.7 1E+02 0.0036 21.5 4.9 41 71-123 17-57 (79)
117 3c57_A Two component transcrip 25.8 93 0.0032 23.3 4.7 42 70-123 27-68 (95)
118 3ulq_B Transcriptional regulat 25.1 1.2E+02 0.004 22.9 5.1 44 68-123 27-70 (90)
119 2jpc_A SSRB; DNA binding prote 24.4 1.3E+02 0.0045 19.9 4.9 37 76-123 3-39 (61)
120 3i4p_A Transcriptional regulat 23.8 14 0.00049 30.7 -0.4 42 21-64 3-44 (162)
121 1je8_A Nitrate/nitrite respons 23.2 1E+02 0.0034 22.5 4.3 42 70-123 21-62 (82)
122 3e7l_A Transcriptional regulat 23.1 1.4E+02 0.0049 20.7 5.0 42 74-133 19-60 (63)
123 2k27_A Paired box protein PAX- 22.5 2.9E+02 0.0099 22.1 7.5 70 16-91 24-103 (159)
124 2rnj_A Response regulator prot 22.2 1.2E+02 0.0042 22.3 4.7 41 71-123 30-70 (91)
125 2kk0_A AT-rich interactive dom 21.8 30 0.001 29.0 1.2 52 25-76 68-132 (145)
126 1or7_A Sigma-24, RNA polymeras 21.7 1E+02 0.0035 25.0 4.5 24 100-124 160-183 (194)
127 2p1m_A SKP1-like protein 1A; F 21.1 30 0.001 29.0 1.1 36 39-82 119-154 (160)
128 1fse_A GERE; helix-turn-helix 20.9 1.3E+02 0.0044 20.6 4.3 43 69-123 10-52 (74)
129 2lm1_A Lysine-specific demethy 20.9 1.4E+02 0.0048 23.1 4.9 46 78-124 48-97 (107)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=4.3e-34 Score=232.58 Aligned_cols=105 Identities=47% Similarity=0.901 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYF 91 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~ 91 (328)
.++||+||+|||++|+++|++||.++|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999999999 599999999999999999999999999999999999999999998
Q ss_pred ccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 046075 92 SFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 92 ~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl 126 (328)
.||++|||||+++||+||+.++++++
T Consensus 80 ---------~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 ---------EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp ---------HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred ---------HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998864
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.3e-33 Score=237.46 Aligned_cols=110 Identities=35% Similarity=0.620 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccc
Q 046075 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFN 94 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~ 94 (328)
||+||+|||++|+++|.+||.++|..||+.| ++|+++|||+||.++|+|.+++|+||+|||++|+++|.+||.+|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~--- 77 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWS--- 77 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHH---
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHH---
Confidence 7999999999999999999988999999999 599999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 046075 95 MHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPI 134 (328)
Q Consensus 95 ~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~ 134 (328)
.||++|||||+++||+||+++|++++.....+..
T Consensus 78 ------~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 78 ------VIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp ------HHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred ------HHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999999999877665443
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.9e-33 Score=230.43 Aligned_cols=104 Identities=33% Similarity=0.573 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccc
Q 046075 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFN 94 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~ 94 (328)
||+||+|||++|+++|.+||.++|..||+.| ++|+++|||+||.++|+|.+++|+||+|||.+|+++|.+||++|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~--- 76 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWN--- 76 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHH---
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHH---
Confidence 7899999999999999999988999999999 499999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 046075 95 MHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQ 128 (328)
Q Consensus 95 ~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k 128 (328)
.||++|||||+++||+||+.++++..+.
T Consensus 77 ------~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 77 ------KISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp ------HHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ------HHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999999886654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=4e-33 Score=234.66 Aligned_cols=107 Identities=45% Similarity=0.889 Sum_probs=102.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNK 89 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~k 89 (328)
+|++++|+||+|||++|+++|++||.++|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 588999999999999999999999988999999999 5999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 046075 90 YFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 90 W~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl 126 (328)
|. .||++|||||+++||+||+.++++++
T Consensus 101 W~---------~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 101 WA---------EIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HH---------HHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HH---------HHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 98 99999999999999999999998764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.6e-32 Score=231.14 Aligned_cols=103 Identities=36% Similarity=0.657 Sum_probs=99.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKY 90 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW 90 (328)
+..+||+||+|||++|+++|.+||. +|..||+.| ++|+++|||+||.++|+|.+++|+||+|||++|+++|.+||.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 6899999999999999999999997 999999999 59999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 91 FSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 91 ~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
. .||++|||||+++||+||+.++++
T Consensus 85 ~---------~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 85 A---------IIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp H---------HHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred H---------HHHHHcCCCCHHHHHHHHHHHHHh
Confidence 8 999999999999999999988766
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=6.5e-31 Score=228.43 Aligned_cols=107 Identities=46% Similarity=0.884 Sum_probs=102.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNK 89 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~k 89 (328)
+|.+++|+||+|||++|+++|++||..+|..||+.| ++|++.||+.||.++|+|.+++++||+|||.+|+++|.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 588999999999999999999999987899999999 6999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 046075 90 YFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 90 W~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl 126 (328)
|. .||++|||||+++||+||+.++++++
T Consensus 132 W~---------~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WA---------EIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HH---------HHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HH---------HHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 98 99999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=9.8e-31 Score=227.29 Aligned_cols=114 Identities=27% Similarity=0.588 Sum_probs=66.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Cc
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGN-KY 90 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~-kW 90 (328)
+++||+||+|||++|+++|.+||.++|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 4789999999999999999999988999999999 599999999999999999999999999999999999999996 58
Q ss_pred cccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 046075 91 FSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPIT 135 (328)
Q Consensus 91 ~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~~ 135 (328)
. .||.+|||||+.||++||+++|++.+.+..|++.+
T Consensus 82 ~---------~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 117 (159)
T 1h89_C 82 S---------VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117 (159)
T ss_dssp H---------HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHH
T ss_pred H---------HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHH
Confidence 7 99999999999999999999987666555555443
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-22 Score=153.52 Aligned_cols=65 Identities=28% Similarity=0.614 Sum_probs=63.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEE 76 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED 76 (328)
+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 789999999999999999999999889999999994 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=5.5e-22 Score=166.64 Aligned_cols=86 Identities=22% Similarity=0.531 Sum_probs=57.6
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCCCCCHHHHHHHHH
Q 046075 41 LPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWN 119 (328)
Q Consensus 41 IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~ 119 (328)
||+.| ++|+++||+.||.++|+|.+++|+||+|||++|+++|.+||. +|. +||.+|||||+.||++||.
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~---------~Ia~~l~~Rt~~qcr~Rw~ 70 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWS---------DIAKHLKGRIGKQCRERWH 70 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHH---------HHHHHSSSCCHHHHHHHHH
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHhcCCcHHHHHHHHH
Confidence 78888 699999999999999999999999999999999999999996 587 9999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCC
Q 046075 120 THIRKKFLQMGIDPITH 136 (328)
Q Consensus 120 ~~Lkkkl~k~~~~p~~~ 136 (328)
++|.+.+.+..|++.++
T Consensus 71 ~~l~p~~~~~~WT~eEd 87 (128)
T 1h8a_C 71 NHLNPEVKKTSWTEEED 87 (128)
T ss_dssp HTTCSSSCCSCCCHHHH
T ss_pred HhcccccccccCCHHHH
Confidence 99887666666655433
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=2.5e-18 Score=159.04 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=92.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccccCCCCC------------------
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHG-----SWNALPKLAGLNRCGKSCRLRWTNYLRPDIR------------------ 67 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~-----nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ik------------------ 67 (328)
+.++|++||+|||++|+++|.++|.. .|.+||+.| +|||+.|||.||+++|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 57899999999999999999999874 299999999 699999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h-----------CCC-----------------------------ccccc-
Q 046075 68 -----------RGRFSEEEERIIINLHSV-L-----------GNK-----------------------------YFSFN- 94 (328)
Q Consensus 68 -----------kg~WT~EED~~Li~Lv~~-~-----------G~k-----------------------------W~~i~- 94 (328)
+..||.+||-.|+..+.+ | |.. ...+.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999999977 2 110 00000
Q ss_pred ----cc---hhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 046075 95 ----MH---IYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 95 ----~~---I~w~~IA~~lpgRT~~qcKnRW~~~Lkkk 125 (328)
.. ..|..||+.+|+||.+.+|+||...|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 01 26889999999999999999999888764
No 11
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=3.9e-18 Score=143.80 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHH
Q 046075 3 RSPCCDESRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG---LNRCGKSCRLRWTNYL-----RPDIRRGRFSEE 74 (328)
Q Consensus 3 R~~cc~k~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~E 74 (328)
++.+.+.....++++||+|||+.|+++|++||.++|..|++.+. ++||+.+|++||++++ +|.+++|.|+++
T Consensus 19 k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~ 98 (122)
T 2roh_A 19 RSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQ 98 (122)
T ss_dssp CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCH
T ss_pred cCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCH
Confidence 34455666789999999999999999999999999999998642 5899999999999999 899999999999
Q ss_pred H-HHHHHHHHHHhCCCc
Q 046075 75 E-ERIIINLHSVLGNKY 90 (328)
Q Consensus 75 E-D~~Li~Lv~~~G~kW 90 (328)
| +.+|++++..+|+.-
T Consensus 99 e~~~~v~~~h~~~g~~~ 115 (122)
T 2roh_A 99 ELLDRVLAAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 9 899999999999864
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=3.2e-18 Score=144.13 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=78.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 046075 8 DESRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG---LNRCGKSCRLRWTNYLR-----PDIRRG-RFSEEEERI 78 (328)
Q Consensus 8 ~k~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L~-----P~ikkg-~WT~EED~~ 78 (328)
+..+..++++||+|||+.|+++|++||.++|..|++.+. ++||+.+|++||+++++ |.+++| +|+++|+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 345789999999999999999999999999999998752 58999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCCcc
Q 046075 79 IINLHSVLGNKYF 91 (328)
Q Consensus 79 Li~Lv~~~G~kW~ 91 (328)
|+.++..+|++|.
T Consensus 90 v~~~h~~~gn~~~ 102 (121)
T 2juh_A 90 VLAAHAYWSQQQG 102 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHccchh
Confidence 9999999999997
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=5.1e-18 Score=125.31 Aligned_cols=57 Identities=32% Similarity=0.541 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIR 67 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ik 67 (328)
+|.+++++||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 478999999999999999999999977999999999 599999999999999999875
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=128.76 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=46.6
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHH
Q 046075 55 RLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTH 121 (328)
Q Consensus 55 R~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~ 121 (328)
--||.++|+|++++++||+|||++|+++|.+||++|+ +||+.| |||+++||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~---------~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWA---------TIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHH---------HHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHH---------HHHHHh-CCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998 999999 99999999999864
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.68 E-value=8.3e-18 Score=120.82 Aligned_cols=52 Identities=46% Similarity=0.933 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 046075 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPD 65 (328)
Q Consensus 13 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 65 (328)
++||+||+|||++|+++|.+||.++|..||+.| ++|+++|||.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 689999999999999999999988899999999 5999999999999999984
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=7.4e-17 Score=123.48 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=59.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 046075 62 LRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPITH 136 (328)
Q Consensus 62 L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~~~ 136 (328)
.+|.+++++||+|||++|+++|.+||.+|. .||.+|||||++|||+||+.+++++++. |+++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~---------~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWT---------KISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHH---------HHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHH---------HHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 578999999999999999999999999998 9999999999999999999999998776 7766543
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=1.4e-17 Score=119.56 Aligned_cols=52 Identities=35% Similarity=0.755 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 046075 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPD 65 (328)
Q Consensus 13 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 65 (328)
+++|+||+|||++|+++|.+||.++|..||+.| ++|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999988999999999 5999999999999999984
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=120.19 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 046075 61 YLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMG 130 (328)
Q Consensus 61 ~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~ 130 (328)
+|+|.+++++||.|||++|+++|.+||.+|. +||+ |+|||+.|||+||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~---------~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWR---------TIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHH---------HHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHH---------HHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 7999999999999999999999999999998 9999 8899999999999999999988764
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=2.8e-17 Score=124.78 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccCCCCCCCCCC
Q 046075 9 ESRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGL-NRCGKSCRLRWTNYLRPDIRRGRFS 72 (328)
Q Consensus 9 k~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~P~ikkg~WT 72 (328)
+.+..++++||+|||++|+++|++||.++|..||+.|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 347899999999999999999999998899999999932 9999999999999999999988754
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=120.21 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPITH 136 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~~~ 136 (328)
.|.+++++||+|||++|+++|.+|| .+|. .||.+|+|||+.|||+||+++|++.+++..|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~---------~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWS---------RIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHH---------HHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHH---------HHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4688999999999999999999999 7888 999999999999999999999999999988887653
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.1e-16 Score=120.69 Aligned_cols=56 Identities=29% Similarity=0.467 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCCC
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG-LNRCGKSCRLRWTNYLRPDIR 67 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCR~RW~n~L~P~ik 67 (328)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.|||+||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999999999999989999999862 389999999999999998764
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=5.2e-16 Score=114.49 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl 126 (328)
+|.+++++||+|||++|+++|.+|| .+|. .||.+|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~---------~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWK---------FLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHH---------HHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 5898 99999999999999999999987654
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=3.5e-16 Score=115.85 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=51.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPD 65 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 65 (328)
+.+++++||+|||++|+++|++||.++|.+||+.| ++|++.|||.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence 68999999999999999999999988999999999 5999999999999999864
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=1.8e-15 Score=108.44 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 66 IRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 66 ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+++++||+|||++|+++|.+||. +|. .||++|+|||+.|||+||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~---------~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWK---------VIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHH---------HHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 888 999999999999999999999864
No 25
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-16 Score=119.23 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRG 69 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg 69 (328)
+|.+++++||+|||++|+++|+.||. +|.+||+ + ++||+.|||.||.++|+|.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence 48999999999999999999999997 9999999 6 47999999999999999977765
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=3.4e-15 Score=113.21 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=56.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhcCC
Q 046075 61 YLRPDIRRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLP--GRTDNEIKNFWNTHIRKKFLQMGI 131 (328)
Q Consensus 61 ~L~P~ikkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lp--gRT~~qcKnRW~~~Lkkkl~k~~~ 131 (328)
...+..++++||+|||++|+++|.+|| .+|. .||.+|+ |||+.|||+||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~---------~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWS---------KILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH---------HHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH---------HHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 456778899999999999999999999 5898 9999999 999999999999999998776544
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.55 E-value=3.1e-15 Score=107.30 Aligned_cols=50 Identities=26% Similarity=0.584 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 66 IRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 66 ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+++++||+|||++|+++|.+||. +|. .||.+|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~---------~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWS---------VIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHH---------HHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHH---------HHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 588 999999999999999999998864
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=6.1e-16 Score=111.67 Aligned_cols=49 Identities=27% Similarity=0.490 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccC
Q 046075 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGL--NRCGKSCRLRWTNYLR 63 (328)
Q Consensus 14 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~--~Rt~kQCR~RW~n~L~ 63 (328)
+||+||+|||++|+++|++||.++|..||+.+ + +||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS-CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence 68999999999999999999988999999999 5 8999999999999875
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=8e-15 Score=105.79 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 046075 67 RRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLP--GRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lp--gRT~~qcKnRW~~~Lkkk 125 (328)
++++||+|||++|+++|.+|| .+|. .||..|+ |||+.|||+||.++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~---------~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWS---------KILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHH---------HHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHH---------HHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 5898 9999999 999999999999998753
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=1.9e-15 Score=111.42 Aligned_cols=52 Identities=23% Similarity=0.445 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 62 (328)
..+.+++||+|||++|+++|++||.++|..||+.|+.+||++|||.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577999999999999999999998899999999944899999999999865
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-15 Score=116.89 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCCCCC
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGH-----GSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGR 70 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~ 70 (328)
|.+++++||+|||++|+++|.+||. .+|..||+.|+ +||+.|||.||++||.+.++.|.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999996 68999999994 99999999999999998877764
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.4e-14 Score=107.15 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
.+.+.+++||+|||++|+++|.+|| .+|. +||++|+|||+.|||+||.++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~---------~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQ---------DVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHH---------HHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHH---------HHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 7898 999999999999999999988753
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=3.6e-15 Score=114.09 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRR 68 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikk 68 (328)
+|.+++++||+|||++|+++|.+||. +|..||+.| ++||+.||+.||.++|++.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999997 999999999 5999999999999999876665
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=109.87 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLG------NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQM 129 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G------~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~ 129 (328)
+|.+++++||+|||++|+++|.+|| .+|. +||.+|+|||+.|||+||+.+|++.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~---------~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQ---------KIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHH---------HHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHH---------HHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 5777 99999999999999999999998866543
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.46 E-value=4.6e-14 Score=106.23 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 046075 66 IRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLP--GRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 66 ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lp--gRT~~qcKnRW~~~Lkkkl 126 (328)
.++++||+|||++|+++|.+||. +|. .||++++ |||+.|||+||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~---------~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWA---------AISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHH---------HHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchH---------HHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 46899999999999999999995 788 9999976 9999999999999987643
No 36
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=3.7e-14 Score=116.72 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=69.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-
Q 046075 8 DESRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG---LNRCGKSCRLRWTNYL-----RPDIRRGRFSEEEERI- 78 (328)
Q Consensus 8 ~k~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~EED~~- 78 (328)
...+..++++||+|||+.|+++|++||.++|..|++.+. ++||+.+|++||++++ +|.+++|.=+++|--.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 344789999999999999999999999999999998652 5899999999999998 6999999888877655
Q ss_pred HHHHHHHhCC
Q 046075 79 IINLHSVLGN 88 (328)
Q Consensus 79 Li~Lv~~~G~ 88 (328)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.43 E-value=1.4e-13 Score=101.34 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCccccccchhHHHHHhhCC-CCCHHHHHHHHHHHH
Q 046075 64 PDIRRGRFSEEEERIIINLHSVLG-NKYFSFNMHIYSIEIIYHLP-GRTDNEIKNFWNTHI 122 (328)
Q Consensus 64 P~ikkg~WT~EED~~Li~Lv~~~G-~kW~~i~~~I~w~~IA~~lp-gRT~~qcKnRW~~~L 122 (328)
..+.+++||+|||++|+++|.+|| .+|. +||++|+ +||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~---------~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWA---------DIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHH---------HHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHH---------HHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 7898 9999999 999999999998764
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=115.86 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=53.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 046075 61 YLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 61 ~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkk 125 (328)
.+.|.+++|+||.|||++|+++|.+||++|. .||.+|+|||++|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~---------~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWS---------AIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4678999999999999999999999999998 9999999999999999999998864
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.43 E-value=5.8e-14 Score=111.03 Aligned_cols=69 Identities=22% Similarity=0.429 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 046075 16 GPWTPEEDQKLVDYIGRHGHGSWNALPKL----AGLNRCGKSCRLRWTNYL-----RPDIRRG-RFSEEEERIIINLHSV 85 (328)
Q Consensus 16 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~----lg~~Rt~kQCR~RW~n~L-----~P~ikkg-~WT~EED~~Li~Lv~~ 85 (328)
++||+|||+.|+++|++||.++|..|++. + ++||+.+|++||++++ .|.+++| +...+...+++.|++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 6 5999999999999988 6777776 6788888999988865
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.42 E-value=4.3e-14 Score=109.31 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRG 69 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg 69 (328)
+|+++||+||+|||++|+++|++||. +|..||+.| +||+.||+.||.. |....+.|
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 58999999999999999999999997 699999999 6999999999974 55554443
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.38 E-value=7.6e-14 Score=117.64 Aligned_cols=63 Identities=25% Similarity=0.516 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHH
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEE 74 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~E 74 (328)
+|.+++|+||+|||++|+++|.+||. +|..||+.| +||++.||+.||.++|++.+..+.|+.+
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l-~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLI-PGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTS-TTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred CccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 58999999999999999999999995 999999999 5999999999999999999999988765
No 42
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.38 E-value=1.3e-13 Score=115.68 Aligned_cols=66 Identities=12% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPITHK 137 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~~~~ 137 (328)
.+..++|+||+|||++|+++|.+||.+|. .||..|+|||+.||+.||.++|.+.+.+..|++.++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~---------~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~ 71 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWK---------MIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA 71 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHH---------HHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHH---------HHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHH
Confidence 45788999999999999999999999988 9999999999999999999999888888777765554
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.36 E-value=2.6e-13 Score=109.77 Aligned_cols=61 Identities=21% Similarity=0.471 Sum_probs=52.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 046075 65 DIRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPI 134 (328)
Q Consensus 65 ~ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~ 134 (328)
++++|+||+|||++|+++|.+||. +|. .||.+|||||+.||+.||.++|.+.+.+..|++.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~---------~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e 62 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWS---------VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHH---------HHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHH---------HHhhhhcCCCHHHHHHHHHhccCCcccccCCCHH
Confidence 468999999999999999999997 587 9999999999999999999988765555545443
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=5.5e-13 Score=104.32 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNY 61 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 61 (328)
....+++||+|||++|+++|++|| ++|.+||+.|+ +||..||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 678899999999999999999999 79999999996 99999999999997
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.31 E-value=4.5e-13 Score=109.22 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 046075 68 RGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPITHK 137 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~~~~ 137 (328)
+|+||+|||++|+++|.+||. +|. .||..|||||+.||+.||.++|.+.+.+..|++.++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~---------~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~ 62 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWI---------RISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHH---------HHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHH---------HHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHH
Confidence 589999999999999999996 687 9999999999999999999999887777777665443
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.96 E-value=2.3e-13 Score=108.41 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=49.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 046075 10 SRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRP 64 (328)
Q Consensus 10 ~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 64 (328)
++.+++|+||+|||++|+++|..||. +|..||+.| ++||+.||+.||.++|+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 57899999999999999999999997 899999999 599999999999999864
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=2.3e-12 Score=99.58 Aligned_cols=52 Identities=6% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLG----NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G----~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
.+.+.+++||.+||.+|++++.+|| .+|. +||.+|||||+.|||+||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~---------~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWD---------KIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHH---------HHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHH---------HHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999 5677 99999999999999999998764
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=5.3e-12 Score=98.73 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHH
Q 046075 65 DIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTH 121 (328)
Q Consensus 65 ~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~ 121 (328)
...+++||+|||++|+++|.+||.+|. +||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~---------~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWN---------KVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHH---------HHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHH---------HHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999998 999999999999999999755
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.19 E-value=2.4e-11 Score=95.95 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 046075 69 GRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYH----LPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 69 g~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~----lpgRT~~qcKnRW~~~Lkkkl 126 (328)
++||.|||+.|+++|.+||. +|. +|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~---------~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWR---------DVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHH---------HHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcH---------HHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999998 898 99996 899999999999999998653
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=4.5e-12 Score=97.92 Aligned_cols=52 Identities=13% Similarity=0.374 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGH---GSWNALPKLAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 63 (328)
+...+++||+|||.+|+.+|.+||. .+|.+||+.| +|||.+||+.||.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999993 4799999999 59999999999997654
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.17 E-value=8.1e-12 Score=115.69 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 046075 64 PDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDPI 134 (328)
Q Consensus 64 P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p~ 134 (328)
+.+++++||+|||++|+++|.++|++-. .+..|.+||++|||||+++||+||+++|++++... ++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~---ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~d 70 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRT---THTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVD 70 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTT---CSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCcc---ccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccC
Confidence 4578899999999999999999998611 23334499999999999999999999999987633 4443
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=3.3e-11 Score=90.34 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHH---hhCCCCCHHHHHHHHHHHHHH
Q 046075 67 RRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEII---YHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA---~~lpgRT~~qcKnRW~~~Lkk 124 (328)
++.+||+|||+.|+++|++||.+|. .|+ .++++||+.++|+||++++|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~---------~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWN---------SILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHH---------HHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHH---------HHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999998 899 578999999999999998764
No 53
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.15 E-value=5.4e-11 Score=95.83 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHH-HHhcCCCC
Q 046075 67 RRGRFSEEEERIIINLHSVLG----NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK-FLQMGIDP 133 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G----~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkk-l~k~~~~p 133 (328)
.+++||.|||++|++++.+|| ++|. +||++|||||+++||+||+.+++.. ....|..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~---------~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWA---------NVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHH---------HHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHH---------HHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 5676 9999999999999999999988764 34455544
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.14 E-value=5.2e-11 Score=97.95 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhhC----CCCCHHHHHHHHHHHHHHH
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYHL----PGRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~l----pgRT~~qcKnRW~~~Lkkk 125 (328)
.+..++++||.|||+.|+++|.+||. +|. .|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~---------~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR---------DVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH---------HHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChH---------HHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999998 898 999965 8999999999999998754
No 55
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.12 E-value=3.9e-11 Score=100.99 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 046075 62 LRPDIRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYH----LPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 62 L~P~ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~----lpgRT~~qcKnRW~~~Lkkkl 126 (328)
+.+..++++||.|||+.|+++|.+||. +|. .|+.. |+|||+.+||+||+++++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~---------~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWR---------DVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHH---------HHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 556778999999999999999999998 898 99998 499999999999999998643
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.06 E-value=1.8e-10 Score=97.09 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CccccccchhHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 046075 64 PDIRRGRFSEEEERIIINLHSVLGN-KYFSFNMHIYSIEIIYH----LPGRTDNEIKNFWNTHIRKKF 126 (328)
Q Consensus 64 P~ikkg~WT~EED~~Li~Lv~~~G~-kW~~i~~~I~w~~IA~~----lpgRT~~qcKnRW~~~Lkkkl 126 (328)
...++++||.|||+.|+++|.+||. +|. .|++. |++||+.+||+||+++++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~---------~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWR---------DVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHH---------HHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChH---------HHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457889999999999999999998 888 89987 489999999999999997653
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.9e-09 Score=86.82 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=60.4
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhC-----CCCCHHHHHHHHHHHHHHH
Q 046075 51 GKSCRLRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHL-----PGRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 51 ~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~l-----pgRT~~qcKnRW~~~Lkkk 125 (328)
..=|.++|.++|.+ ++||.||+..|++|+++||-+|. .|+..+ ++||..++|+||..+.++.
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~---------vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFV---------VIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHH---------HHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCee---------eehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34578999999976 89999999999999999999998 999999 5899999999999999988
Q ss_pred HHhcC
Q 046075 126 FLQMG 130 (328)
Q Consensus 126 l~k~~ 130 (328)
+...+
T Consensus 84 ~~~r~ 88 (93)
T 3hm5_A 84 ANVRA 88 (93)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 77764
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.85 E-value=3.5e-10 Score=91.06 Aligned_cols=48 Identities=10% Similarity=0.349 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccccccc
Q 046075 14 KKGPWTPEEDQKLVDYIGRHGH---GSWNALPKLAGLNRCGKSCRLRWTNYL 62 (328)
Q Consensus 14 kKg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L 62 (328)
.+++||+|||++|.+++.+||. ..|.+||+.+ +|||..+|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 4678999999999999999983 4699999999 5999999999998754
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=6.3e-09 Score=77.13 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 046075 67 RRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHI 122 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~L 122 (328)
..++||+||++++++++..||.+|. .||.+||+||..+|+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~---------~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFG---------LIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHH---------HHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHH---------HHHHHcCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999998 9999999999999999997643
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=7.1e-09 Score=79.73 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 046075 65 DIRRGRFSEEEERIIINLHSVLG----NKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGI 131 (328)
Q Consensus 65 ~ikkg~WT~EED~~Li~Lv~~~G----~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~ 131 (328)
..+.+.||.||+++|.+++.+|+ .+|. +||.+| |||..+|++||..+.+......|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~---------~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWE---------KIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHH---------HHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHH---------HHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 45678999999999999999997 4576 999998 999999999998886654333333
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.68 E-value=5e-09 Score=78.54 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccC
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALP---KLAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IA---k~lg~~Rt~kQCR~RW~n~L~ 63 (328)
..++.+||+|||+.|+++|++||. +|..|+ ..+ ++||....++||++..+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence 458899999999999999999997 999999 455 58999999999998654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=75.05 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNY 61 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 61 (328)
.....++||+||++++.+++.+||. +|..||..| ++|+..||+.+|...
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l-~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL-ERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC-TTSCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHHHh
Confidence 3467799999999999999999995 999999999 599999999999654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.54 E-value=5.6e-08 Score=89.47 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 67 RRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
..++||+||+.++++++.+||++|. .||+++++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~---------~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQ---------AISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHH---------HHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHH---------HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998 999999999999999999987765
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=2.4e-08 Score=76.71 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGH---GSWNALPKLAGLNRCGKSCRLRWTNYL 62 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L 62 (328)
.+.+++.||.|||++|.+++.+|+. ..|.+||+.+| |+..+|+.||....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 4567889999999999999999984 46999999985 99999999998654
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=3.8e-08 Score=72.87 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 046075 15 KGPWTPEEDQKLVDYIGRH--------GHGSWNALPK-LAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L~ 63 (328)
|.+||+|||+.|+++|.+| |..-|..+++ .+ ++||..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 67 79999999999998875
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.18 E-value=2.7e-06 Score=62.84 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHh-hCCCCCHHHHHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIY-HLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~-~lpgRT~~qcKnRW~~~Lk 123 (328)
|.+||.|||..|++.|.++...=..+..+-.|..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999432223445566779999 8999999999999988764
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.15 E-value=1.1e-06 Score=88.55 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 046075 69 GRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHI 122 (328)
Q Consensus 69 g~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~L 122 (328)
..||.||-.++++++.+||.+|. .||.+++.||..|||++|...-
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~---------~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQ---------AISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHH---------HHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHH---------HHHHHhCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998 9999999999999999997543
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.13 E-value=2.1e-06 Score=66.20 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHI 122 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~L 122 (328)
...||.+|+.+|.++...|+..-. -.|.+||.++||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp-----~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKP-----GFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSS-----SHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCc-----cHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999985310 12339999999999999999998774
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=5.8e-07 Score=82.74 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 63 (328)
....++||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456789999999999999999995 9999999996 9999999999998775
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.10 E-value=6.3e-07 Score=69.17 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 046075 15 KGPWTPEEDQKLVDYIGRHGH---GSWNALPKLAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 63 (328)
...||.+|+.+|..++..|+. +.|.+||..++ +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999985 46999999995 9999999999987654
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.86 E-value=1.6e-05 Score=63.72 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 70 RFSEEEERIIINLHSVLGN---KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 70 ~WT~EED~~Li~Lv~~~G~---kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
-||+|||..|+..+++-|. .|. .||+.|.+|+.+||++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa---------~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFS---------VISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHH---------HHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHH---------HHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999997 676 999999999999999999998864
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=5.6e-05 Score=56.22 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHh-hCCCCCHHHHHHHHHH
Q 046075 63 RPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIY-HLPGRTDNEIKNFWNT 120 (328)
Q Consensus 63 ~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~-~lpgRT~~qcKnRW~~ 120 (328)
.|.+....||+||-.+-.+.+.+||.+|. .|++ .+++||..+|...|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~---------~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFF---------RIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHH---------HHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHH---------HHHHHHcCCCcHHHHHHHHhc
Confidence 46777889999999999999999999998 9999 5899999999998864
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.85 E-value=6e-06 Score=62.85 Aligned_cols=44 Identities=11% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---CccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 70 RFSEEEERIIINLHSVLGN---KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 70 ~WT~EED~~Li~Lv~~~G~---kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
-||.|||..|+..+.+-|. .|. .||..| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa---------~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFA---------YLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999998 787 999999 9999999999998875
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.64 E-value=9e-05 Score=70.90 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 046075 16 GPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRL-------RWTNY--------------------------- 61 (328)
Q Consensus 16 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~-------RW~n~--------------------------- 61 (328)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999996 787766541 22100
Q ss_pred ---------------c-CCCCCCCCCCHHHHHHHHHHHHHhCC---C-ccccccchhHHHHHh------------hCCCC
Q 046075 62 ---------------L-RPDIRRGRFSEEEERIIINLHSVLGN---K-YFSFNMHIYSIEIIY------------HLPGR 109 (328)
Q Consensus 62 ---------------L-~P~ikkg~WT~EED~~Li~Lv~~~G~---k-W~~i~~~I~w~~IA~------------~lpgR 109 (328)
+ .+..+...||++||..|+-++.+||- . |. .|.. ++..|
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we---------~Ir~~Ir~~p~FrFDwf~kSR 260 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYE---------ELRAAIRASPQFRFDWFIKSR 260 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHH---------HHHHHHHHCGGGTTCHHHHTC
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHH---------HHHHHHHhCcchhhhHHHhcC
Confidence 0 12224458999999999999999996 3 44 6652 45689
Q ss_pred CHHHHHHHHHHHHHHH
Q 046075 110 TDNEIKNFWNTHIRKK 125 (328)
Q Consensus 110 T~~qcKnRW~~~Lkkk 125 (328)
|+.+|..|.+++++-.
T Consensus 261 Tp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 261 TALELQRRCNTLITLI 276 (304)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.59 E-value=0.00017 Score=58.01 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHhc
Q 046075 56 LRWTNYLRPDIRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLP-----GRTDNEIKNFWNTHIRKKFLQM 129 (328)
Q Consensus 56 ~RW~n~L~P~ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lp-----gRT~~qcKnRW~~~Lkkkl~k~ 129 (328)
+.|..+|. ...||.||...|++|+++|+-+|. .|+.... .||-.++|+||+.+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~---------vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFV---------VIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHH---------HHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeE---------EEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555564 368999999999999999999998 8888873 7999999999999998876654
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.55 E-value=1.6e-05 Score=61.38 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 046075 15 KGPWTPEEDQKLVDYIGRHGHG---SWNALPKLAGLNRCGKSCRLRWT 59 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~ 59 (328)
.+.||.+|+.+|..++..|+.+ .|.+||..++ ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4679999999999999999864 6999999994 999999999995
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.42 E-value=2.9e-05 Score=59.97 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CccccccchhHHHHHhhCCCCCHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGN----KYFSFNMHIYSIEIIYHLPGRTDNEIKNFWN 119 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~----kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~ 119 (328)
.+.||.+|++++..+...|+. +|. +||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWe---------kIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWK---------KVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSST---------TTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHH---------HHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 687 9999999999999999874
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=9e-05 Score=55.07 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTN 60 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n 60 (328)
|.++...||+||-++..+++.+||. +|..|++ .+ ++|+..+|..-|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCcHHHHHHHHhc
Confidence 6788899999999999999999996 9999998 57 59999999887753
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.18 E-value=9e-05 Score=74.78 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 046075 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYL 62 (328)
Q Consensus 13 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 62 (328)
....+||.||-+++++++.+||. +|..||+.+| +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45789999999999999999995 9999999997 999999999997654
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.14 E-value=0.00055 Score=54.78 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNT 120 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~ 120 (328)
...||+||.++..+....||.+|. +||..||+||..+|-..|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~---------~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFG---------LIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHH---------HHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHH---------HHHHHcCCCCHHHHHHHHhc
Confidence 457999999999999999999998 99999999999999998864
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.11 E-value=9.2e-05 Score=59.52 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccccC
Q 046075 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG----LNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 13 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L~ 63 (328)
++..+||.||+..|++++++|+. .|..|+..+. ++|+..+.+.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999996 9999999883 37999999999987543
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.04 E-value=0.00093 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHh-hCCCCCHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIY-HLPGRTDNEIKNFWN 119 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~-~lpgRT~~qcKnRW~ 119 (328)
...||+||-.+-.+.+.+||.+|. .|++ .+++||..+|...|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~---------~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFN---------DIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHH---------HHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHH---------HHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999999998 9999 599999999999987
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.83 E-value=0.00015 Score=56.42 Aligned_cols=49 Identities=20% Similarity=0.562 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 046075 14 KKGPWTPEEDQKLVDYIGRHGH---------GSWNALPKLA---GLNRCGKSCRLRWTNYL 62 (328)
Q Consensus 14 kKg~WT~EEDe~L~~lV~k~G~---------~nW~~IAk~l---g~~Rt~kQCR~RW~n~L 62 (328)
+...||.+|-..|+.+...... .-|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999875321 1499999876 56899999999998754
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.72 E-value=0.0012 Score=51.20 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcc-ccccchhHHHHHhhCC----CCCHHHHHHHHHHHHHHHHHh
Q 046075 67 RRGRFSEEEERIIINLHSVLGNKYF-SFNMHIYSIEIIYHLP----GRTDNEIKNFWNTHIRKKFLQ 128 (328)
Q Consensus 67 kkg~WT~EED~~Li~Lv~~~G~kW~-~i~~~I~w~~IA~~lp----gRT~~qcKnRW~~~Lkkkl~k 128 (328)
+...||.+|-..||+++..+..... .-.....|..||..|. .||+.||+++|.++.+. +++
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~ 68 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKK 68 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence 3468999999999999976422100 0012456779999973 79999999999886654 444
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.44 E-value=0.00083 Score=53.72 Aligned_cols=43 Identities=12% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 046075 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWT 59 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~ 59 (328)
...||+||.++..+....||. +|..|++.+ ++|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l-~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFL-ERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTC-TTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHc-CCCCHHHHHHHHh
Confidence 467999999999999999995 999999999 5999999998774
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.32 E-value=0.0012 Score=50.03 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 046075 14 KKGPWTPEEDQKLVDYIGRHGHGSWNALPK-LAGLNRCGKSCRLRWTN 60 (328)
Q Consensus 14 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n 60 (328)
....||+||-.+..+++.+||. +|..|++ .+ ++|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFL-PWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCCHHHHHHHHHh
Confidence 4567999999999999999996 9999999 58 59999999987753
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.16 E-value=0.003 Score=50.58 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccc
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHGH--GSWNALPKLAGLNRCGKSCRLRWTN 60 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n 60 (328)
+-+-..||.|||..|+...++.|. ..|..||+.+| +|+..|.++|++.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 334457999999999999999985 46999999997 9999999999965
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.97 E-value=0.014 Score=57.26 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc-------cccccc---------------------------
Q 046075 16 GPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCR-------LRWTNY--------------------------- 61 (328)
Q Consensus 16 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR-------~RW~n~--------------------------- 61 (328)
+.||..+=..++.++.+||..+-..||..|+++++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999988999999995466665544 111110
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHHHhCC----CccccccchhHHHHHhh------------CC
Q 046075 62 -------------L----RPD-IRRGRFSEEEERIIINLHSVLGN----KYFSFNMHIYSIEIIYH------------LP 107 (328)
Q Consensus 62 -------------L----~P~-ikkg~WT~EED~~Li~Lv~~~G~----kW~~i~~~I~w~~IA~~------------lp 107 (328)
| .+. .+...||.+||..|+-++.+||- .|. .|-.. +.
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we---------~Ir~~Ir~~p~FrFDwF~k 274 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYE---------LVRDEIRDCPLFELDFYFR 274 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHH---------HHHHHHHHCSGGGSCHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHH---------HHHHHHHhCcchhhhHHHh
Confidence 1 011 13457999999999999999995 354 55332 46
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 046075 108 GRTDNEIKNFWNTHIRKKFL 127 (328)
Q Consensus 108 gRT~~qcKnRW~~~Lkkkl~ 127 (328)
.||+.+|..|.+++|+-..+
T Consensus 275 SRT~~EL~rRc~tLi~~IeK 294 (374)
T 2y9y_A 275 SRTPVELARRGNTLLQCLEK 294 (374)
T ss_dssp TCCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999976443
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.89 E-value=0.0013 Score=50.02 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccC
Q 046075 14 KKGPWTPEEDQKLVDYIGRHGH--GSWNALPKLAGLNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 14 kKg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 63 (328)
.--.||.|||..|+..+++-|. .-|..||+.+ +|++.|+..||+..+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999986 3699999888 5999999999987543
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.34 E-value=0.041 Score=48.62 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCCccccccc
Q 046075 12 SLKKGPWTPEEDQKLVDYIGRHG--HGSWNALPKL 44 (328)
Q Consensus 12 ~lkKg~WT~EEDe~L~~lV~k~G--~~nW~~IAk~ 44 (328)
.-....||..|-..|++++.+|| .+.|..|++.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d 38 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD 38 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 34567899999999999999999 5689999754
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.96 E-value=0.019 Score=50.84 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=30.7
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 046075 5 PCCDESRSLKKGPWTPEEDQKLVDYIGRHGHGSWNALPK 43 (328)
Q Consensus 5 ~cc~k~~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk 43 (328)
|++.+ +.-....||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~-~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTK-AAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCC-CCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCC-CCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44444 333456799999999999999999999999865
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.32 E-value=0.27 Score=36.71 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhC--CCCCHHHHHHHHHHH
Q 046075 66 IRRGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHL--PGRTDNEIKNFWNTH 121 (328)
Q Consensus 66 ikkg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~l--pgRT~~qcKnRW~~~ 121 (328)
..+-.||+|.-+..+++|..+|..+. .++.|.+.| +|.|..+|+.|...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~A------tPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERA------VPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTC------CHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCC------CcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34668999999999999999996653 345888886 689999999987654
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.07 E-value=0.027 Score=45.14 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccccC
Q 046075 13 LKKGPWTPEEDQKLVDYIGRHGHGSWNALPKLAG----LNRCGKSCRLRWTNYLR 63 (328)
Q Consensus 13 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L~ 63 (328)
++...||.||...|.+++++|.. .|-.|+.... ..|+..+.++||..+.+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999996 9999997763 26888999999987543
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.47 E-value=0.058 Score=50.68 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 046075 16 GPWTPEEDQKLVDYIGRHGHGSWNALPK 43 (328)
Q Consensus 16 g~WT~EEDe~L~~lV~k~G~~nW~~IAk 43 (328)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999974
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=88.03 E-value=0.69 Score=44.13 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-ccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 69 GRFSEEEERIIINLHSVLGNK-YFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 69 g~WT~EED~~Li~Lv~~~G~k-W~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
+.||..+....+.++.+||.. |. .||..|+|+|..+|+.++.....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~---------~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDID---------NIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHH---------HHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHH---------HHHHHhcCCCHHHHHHHHHHHHH
Confidence 479999999999999999974 44 89999999999999877766554
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.34 E-value=0.25 Score=36.93 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--Cccccccccc-cccccccccccccc
Q 046075 11 RSLKKGPWTPEEDQKLVDYIGRHGHG--SWNALPKLAG-LNRCGKSCRLRWTN 60 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L~~lV~k~G~~--nW~~IAk~lg-~~Rt~kQCR~RW~n 60 (328)
+...+-.||+|..++.+++|+..|.. -++.|.+.|+ ++.|..+++-+.+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35678899999999999999999942 2678888876 25666666655443
No 97
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=54.22 E-value=49 Score=25.69 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 046075 17 PWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCR---LRWTNYL--RPDIRRGRFSEEEERIIINLHSVLGNKYF 91 (328)
Q Consensus 17 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR---~RW~n~L--~P~ikkg~WT~EED~~Li~Lv~~~G~kW~ 91 (328)
..|.++-..++.++ .-|. .-.+||+.+| .+...++ .||..+- ...-.....+.+++..|+.+ ... ..|+
T Consensus 6 ~~s~~~r~~i~~~~-~~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~-~~~s 79 (141)
T 1u78_A 6 ALSDTERAQLDVMK-LLNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASN-SCKT 79 (141)
T ss_dssp CCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHH-CCCC
T ss_pred cCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhC-CCCC
Confidence 36788888887777 3464 7889999997 4433332 2222211 11112235788888888887 333 3354
Q ss_pred ccccchhHHHHHhhCCC-CCHHHHHH
Q 046075 92 SFNMHIYSIEIIYHLPG-RTDNEIKN 116 (328)
Q Consensus 92 ~i~~~I~w~~IA~~lpg-RT~~qcKn 116 (328)
. ..|+..+.- -+...|..
T Consensus 80 ~-------~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 80 A-------RDIRNELQLSASKRTILN 98 (141)
T ss_dssp H-------HHHHHHTTCCSCHHHHHH
T ss_pred H-------HHHHHHHCCCccHHHHHH
Confidence 1 378888822 45555543
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=52.17 E-value=3.9 Score=33.73 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=39.0
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRCG----KSCRLRWTNYLRPDIRRGRFSEEEERIIINLHS 84 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~----kQCR~RW~n~L~P~ikkg~WT~EED~~Li~Lv~ 84 (328)
+|..+|.+.|- +.|.+||..||...+. ...|..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 34445555542 2499999999865433 356888999987632 378889888877664
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=51.88 E-value=27 Score=32.49 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CccccccchhHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGN---KYFSFNMHIYSIEIIYH--LPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~---kW~~i~~~I~w~~IA~~--lpgRT~~qcKnRW~~~Lk 123 (328)
++.||+.|-..|++.+.+||. +|. .|+.. |+.|+...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e---------~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILD---------ELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHH---------HHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHH---------HHHHhcccccCCHHHHHHHHHHHHH
Confidence 578999999999999999994 666 77654 789999999888876654
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=49.75 E-value=13 Score=32.57 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=20.4
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCC
Q 046075 11 RSLKKGPWTPEEDQKL--------VDYIGRHGH 35 (328)
Q Consensus 11 ~~lkKg~WT~EEDe~L--------~~lV~k~G~ 35 (328)
|.-.+|-||+|+|+.| .++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 4567899999999988 467888884
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.78 E-value=36 Score=25.33 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 75 EERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 75 ED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
.+..++.|+...|-.-. .||..| |-+...|+.+....++
T Consensus 41 ~~r~vl~l~~~~g~s~~---------eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTA---------QIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHTSCCCHH---------HHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 44556666666676666 999999 8899999988765543
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.67 E-value=4.4 Score=32.81 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccccccccccccccCC
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRCGKSCRLRWTNYLRP 64 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 64 (328)
+|..+|.+.|- +.|..||..||... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56777777763 35999999998554 77888888888865
No 103
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.57 E-value=36 Score=23.33 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 74 EEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 74 EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+.+..++.++...|-.+. .||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~---------eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYA---------DAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHH---------HHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667777776 999999 88999999887665543
No 104
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.57 E-value=7.4 Score=30.85 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRC----GKSCRLRWTNYLRP 64 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P 64 (328)
+|..+|.+.|- +.|.+||..||...+ +.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 369999999985442 35678888888876
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=37.92 E-value=46 Score=32.50 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCC-CCCHHHHHHHHHHHH
Q 046075 69 GRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLP-GRTDNEIKNFWNTHI 122 (328)
Q Consensus 69 g~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lp-gRT~~qcKnRW~~~L 122 (328)
+.||.-+=...+.++.+||..--. .||..|. |+|..+|+.+.....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~--------~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQ--------AIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHH--------HHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHH--------HHHHHHccCCCHHHHHHHHHHHH
Confidence 468888889999999999976432 9999997 999999995444433
No 106
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.31 E-value=55 Score=23.14 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH----hCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 74 EEERIIINLHSV----LGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 74 EED~~Li~Lv~~----~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+.+..++.+... .|-.+. .||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~---------eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLE---------EVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHH---------HHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHH---------HHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555656554 456666 999999 89999999987766644
No 107
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=34.25 E-value=6.3 Score=31.94 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---ccccccccccccCC
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRC---GKSCRLRWTNYLRP 64 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 64 (328)
+|..+|.+.|- +.|.+||..||...+ +.+.|..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777877763 359999999985443 34567777777754
No 108
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.14 E-value=1e+02 Score=24.41 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 046075 15 KGPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNY------LRPDIR----RGRFSEEEERIIINLHS 84 (328)
Q Consensus 15 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~ik----kg~WT~EED~~Li~Lv~ 84 (328)
....|.++-..++.++. .|. .-.+||+.+| .+...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35689999888888884 564 7889999997 333333 333321 223222 23478888888888886
Q ss_pred Hh
Q 046075 85 VL 86 (328)
Q Consensus 85 ~~ 86 (328)
+.
T Consensus 105 ~~ 106 (149)
T 1k78_A 105 QN 106 (149)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 109
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.36 E-value=24 Score=28.38 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 78 IIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 78 ~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+|..+|...|. +..|...-.|..||..|.--....+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG-~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGG-ADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTS-HHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcC-HHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47788888885 11222223455999998555588999999888754
No 110
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.22 E-value=6.7 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRC----GKSCRLRWTNYLRP 64 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P 64 (328)
+|..+|.+.|- ..|.+||..||...+ +...+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 369999999985443 34567778887765
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=31.67 E-value=33 Score=28.05 Aligned_cols=47 Identities=6% Similarity=-0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 046075 78 IIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKK 125 (328)
Q Consensus 78 ~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkk 125 (328)
+|..+|.+.|. +..|...-.|..||..|.--....+|..|..+|-.-
T Consensus 52 ~Ly~~V~~~GG-~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGG-ADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSC-HHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-HHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 47777777775 223334446779999985555999999999988763
No 112
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.11 E-value=51 Score=22.94 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH----HhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 74 EEERIIINLHS----VLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 74 EED~~Li~Lv~----~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
+.+..++.+.. ..|-.+. .||..| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~---------eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLE---------EVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHH---------HHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHH---------HHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455555554 2355665 999999 89999999987766543
No 113
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=29.91 E-value=45 Score=26.78 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCccccccchhHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 046075 78 IIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRT----DNEIKNFWNTHIRK 124 (328)
Q Consensus 78 ~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT----~~qcKnRW~~~Lkk 124 (328)
+|..+|.+.|. +..|...-.|..||..|.--. ...+|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG-~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGG-YEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTC-HHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccC-HHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57888888885 222222334559999984332 56889999888765
No 114
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=29.61 E-value=9 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---ccccccccccccCC
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRC---GKSCRLRWTNYLRP 64 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 64 (328)
+|..+|.+.|- +.|.+|+..||...+ +.+.+..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666666652 369999999985442 23567777777653
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.87 E-value=61 Score=26.23 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCccccccchhHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 046075 78 IIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRT----DNEIKNFWNTHIRK 124 (328)
Q Consensus 78 ~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT----~~qcKnRW~~~Lkk 124 (328)
+|..+|.+.|. +..|...-.|..||..|.--. ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG-~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGG-FAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTC-HHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccC-HHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47788888885 222223334569999984322 46889999888865
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.74 E-value=1e+02 Score=21.52 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 71 FSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 71 WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
.|+.|-+ ++.++ ..|-... .||..| |-+...|+.+....++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~---------eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNK---------SIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHH---------HHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 4555544 44454 5566655 999999 8899999887765543
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.81 E-value=93 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 70 RFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 70 ~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
..|+.|-+.|. ++ ..|-.-. .||..| |-+...|+.+....++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~---------eIA~~l-~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNK---------QIADRM-FLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHH---------HHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 46666655554 44 6676666 999999 8899999987765543
No 118
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.12 E-value=1.2e+02 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 68 RGRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 68 kg~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
....|+.|-+.|.-++ .|..-. .||..| |-+...|+.+....++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~---------eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQ---------EIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHH---------HHHHHH-TCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 4467888777665554 676666 999999 8899999987766544
No 119
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.38 E-value=1.3e+02 Score=19.95 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 76 ERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 76 D~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
+..++.+ -..|-.-. .||..| |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~---------eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNH---------GISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSH---------HHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHH---------HHHHHh-CCCHHHHHHHHHHHHH
Confidence 3455555 35566665 999999 8899999987766554
No 120
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.78 E-value=14 Score=30.69 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 046075 21 EEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNYLRP 64 (328)
Q Consensus 21 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 64 (328)
+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45888999999999889999999997 6777788777654433
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.22 E-value=1e+02 Score=22.48 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 70 RFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 70 ~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
..|+.|-+.|. ++ ..|-.-. +||..| |-+...|+.+....++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~---------eIA~~l-~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNK---------MIARRL-DITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHH---------HHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 46666655554 44 5666665 999999 8899999887765543
No 122
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.11 E-value=1.4e+02 Score=20.67 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 046075 74 EEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIRKKFLQMGIDP 133 (328)
Q Consensus 74 EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lkkkl~k~~~~p 133 (328)
-|.+.|.++...+|.+.. +.|+.+ |=+. ..|.+++++.|+.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~---------~aA~~L-Gisr--------~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLK---------RTAEEI-GIDL--------SNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHH---------HHHHHH-TCCH--------HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHH---------HHHHHH-CcCH--------HHHHHHHHHhCCCC
Confidence 477888888899988876 888887 4444 35666777777754
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.45 E-value=2.9e+02 Score=22.06 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 046075 16 GPWTPEEDQKLVDYIGRHGHGSWNALPKLAGLNRCGKSCRLRWTNY------LRPDIR----RGRFSEEEERIIINLHSV 85 (328)
Q Consensus 16 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~ik----kg~WT~EED~~Li~Lv~~ 85 (328)
...|.++-..++.++. .|. .-.+||+.+| .+...+ .||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688998888888884 564 7889999997 333333 233332 222221 234788888888888765
Q ss_pred hCCCcc
Q 046075 86 LGNKYF 91 (328)
Q Consensus 86 ~G~kW~ 91 (328)
. ..|+
T Consensus 99 ~-~~~s 103 (159)
T 2k27_A 99 N-PTMF 103 (159)
T ss_dssp C-SSSC
T ss_pred C-ccch
Confidence 4 3454
No 124
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.25 E-value=1.2e+02 Score=22.26 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 71 FSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 71 WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
.|+.|-+.| .++ ..|-.-. .||..| |-+...|+.+....++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~---------eIA~~l-~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQ---------EIASAS-HITIKTVKTHVSNILS 70 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTT---------HHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHH---------HHHHHH-CcCHHHHHHHHHHHHH
Confidence 555555554 444 5677776 999999 8899999987765443
No 125
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.83 E-value=30 Score=28.99 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=33.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC--CCCCCCCCHHHH
Q 046075 25 KLVDYIGRHGH-------GSWNALPKLAGLNRC----GKSCRLRWTNYLRP--DIRRGRFSEEEE 76 (328)
Q Consensus 25 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P--~ikkg~WT~EED 76 (328)
+|..+|.+.|- ..|.+||..||...+ +...+..|.++|-| ...+|.=.++|-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 46666766663 359999999985442 34678888888876 233444444443
No 126
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.67 E-value=1e+02 Score=25.01 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=19.7
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHH
Q 046075 100 IEIIYHLPGRTDNEIKNFWNTHIRK 124 (328)
Q Consensus 100 ~~IA~~lpgRT~~qcKnRW~~~Lkk 124 (328)
..||..| |-+...|+.+....+++
T Consensus 160 ~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 160 EEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4999999 89999999988766554
No 127
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.11 E-value=30 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=26.6
Q ss_pred ccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHH
Q 046075 39 NALPKLAGLNRCGKSCRLRWTNYLRPDIRRGRFSEEEERIIINL 82 (328)
Q Consensus 39 ~~IAk~lg~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Li~L 82 (328)
..||..+. |+++.+||..+. + ...||+||++.|.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 45667774 899999998772 3 336999999887653
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.92 E-value=1.3e+02 Score=20.62 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccccchhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 046075 69 GRFSEEEERIIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRTDNEIKNFWNTHIR 123 (328)
Q Consensus 69 g~WT~EED~~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT~~qcKnRW~~~Lk 123 (328)
...|+.|-+.|.. + ..|.... .||..+ |-+...|+.+.....+
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~---------eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTK---------EIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHH---------HHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHH---------HHHHHH-CCCHHHHHHHHHHHHH
Confidence 3567777665554 4 4555555 999999 8899999887765543
No 129
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.85 E-value=1.4e+02 Score=23.15 Aligned_cols=46 Identities=4% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCccccccchhHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 046075 78 IIINLHSVLGNKYFSFNMHIYSIEIIYHLPGRT----DNEIKNFWNTHIRK 124 (328)
Q Consensus 78 ~Li~Lv~~~G~kW~~i~~~I~w~~IA~~lpgRT----~~qcKnRW~~~Lkk 124 (328)
+|..+|.+.|.-- .|...-.|..||..|.--. ...+|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~-~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGME-QTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHH-HHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHH-HhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4777777787421 1222224559999994433 56889989888764
Done!