BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046077
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 17/187 (9%)
Query: 253 KRQSSCSEE-EVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQP 311
K+++ +EE E ++WLD++P GSVLYV+FGS T E+ ELA L +S F+WV++
Sbjct: 247 KQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRS 306
Query: 312 GSE----------------EYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCG 355
S ++P R RG +I WAPQA +L H STGGFL+HCG
Sbjct: 307 PSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCG 366
Query: 356 WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERL 415
WNST+E++V G+P +AWP+ +Q NA L+ I+ LR V++ ++A ++ L
Sbjct: 367 WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGL 426
Query: 416 MSDEEMK 422
M EE K
Sbjct: 427 MEGEEGK 433
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 12/193 (6%)
Query: 260 EEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQP----GSEE 315
+ E + WL+SK GSV+YV FGS T E+ E A L F+W+++P G
Sbjct: 282 DTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV 341
Query: 316 YMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR 375
+ N +++RGLI +W PQ +LNH S GGFL+HCGWNST E+I GVP L WP
Sbjct: 342 IFSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF 400
Query: 376 GDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE---EMKTRAAILQVKF 432
DQ + + + N ++G+ + + VK+ ++A+ I +++ + +MK +A L+ K
Sbjct: 401 ADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKA 456
Query: 433 EQGFPASSVAALN 445
E+ + +N
Sbjct: 457 EENTRPGGCSYMN 469
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 7/191 (3%)
Query: 249 ITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWV 308
+T +R+ S E ++WLD SV+Y++FGS V P E LA +LEE PFIW
Sbjct: 250 LTTPQRKVS-DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWS 308
Query: 309 VQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVP 368
+ +E +P R +G I+ AWAPQ IL H S G FL+H GWNS +E IV GVP
Sbjct: 309 FRGDPKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVP 367
Query: 369 FLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMK-TRAAI 427
++ P GDQ N L + +++G+ V + + + K I + +E MS E+ R I
Sbjct: 368 MISRPFFGDQGLNTILTESVLEIGVGVDNGV---LTKESIKKALELTMSSEKGGIMRQKI 424
Query: 428 LQVKFEQGFPA 438
+++K E F A
Sbjct: 425 VKLK-ESAFKA 434
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 264 IQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDN 323
+QWL + SV+Y++FG+ P E L+ ALE S PFIW ++ + ++P
Sbjct: 262 LQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLE 321
Query: 324 RVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAK 383
+ G+++ WAPQA +L H + G F++HCGWNS E++ GVP + P GDQ N +
Sbjct: 322 KTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGR 380
Query: 384 LVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMK 422
+V + +++G+R+ + K + ++++S E+ K
Sbjct: 381 MVEDVLEIGVRIEGGV---FTKSGLMSCFDQILSQEKGK 416
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 263 VIQWLDSKPRGSVLYVAFGS---EVGPTREEYRELAGALEESPGPFIW-------VVQPG 312
+++WLD +P SV+++ FGS GP+ + RE+A L+ S F+W V G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPS--QIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 313 SEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW 372
E+M + +G+I WAPQ +L H + GGF+SHCGWNS +E++ GVP L W
Sbjct: 324 FLEWM------ELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 373 PIRGDQYFNAKLVVNYIKVGLRVTDDL---SETVKKGDIAEGIERLMSDEEMKTRAAILQ 429
PI +Q NA +V VGL + D S+ V +I +G++ LM + +I+
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD------KDSIVH 430
Query: 430 VKFEQGFPASSVAALNAFSDFIS 452
K ++ S A ++ S IS
Sbjct: 431 KKVQEMKEMSRNAVVDGGSSLIS 453
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 263 VIQWLDSKPRGSVLYVAFGS---EVGPTREEYRELAGALEESPGPFIW-------VVQPG 312
+++WLD +P SV+++ FGS GP+ + RE+A L+ S F+W V G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPS--QIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 313 SEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW 372
E+M + +G+I WAPQ +L H + GGF+SHCGWNS +E++ GVP L W
Sbjct: 324 FLEWM------ELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 373 PIRGDQYFNAKLVVNYIKVGLRVTDDL---SETVKKGDIAEGIERLMSDEEMKTRAAILQ 429
PI +Q NA +V VGL + D S+ V +I +G++ LM + +I+
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD------KDSIVH 430
Query: 430 VKFEQGFPASSVAALNAFSDFIS 452
K ++ S A ++ S IS
Sbjct: 431 KKVQEMKEMSRNAVVDGGSSLIS 453
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 261 EEVIQWLDSKPRGSVLYVAFGSEV-GPTREEYRELAGALEESPGPFIWVVQPGSEEYMPH 319
+E ++ S V+ + GS V T E +A AL + P +W + +
Sbjct: 9 KEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPDTL-- 66
Query: 320 DLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQY 379
L+ R ++ W PQ +L H T F++H G N EAI HG+P + P+ DQ
Sbjct: 67 GLNTR-------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQP 119
Query: 380 FNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMK 422
N + + G V D + T D+ ++R+++D K
Sbjct: 120 DN---IAHXKARGAAVRVDFN-TXSSTDLLNALKRVINDPSYK 158
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 268 DSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYM-PHDLDNRVS 326
D +P VL +A GS + YR A++ W V ++ P DL
Sbjct: 253 DGRP---VLLIALGSAFTDHLDFYRTCLSAVDG----LDWHVVLSVGRFVDPADLGEVPP 305
Query: 327 NRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVV 386
N + +H W PQ IL S F++H G STMEA+ + VP +A P +Q NA+ +V
Sbjct: 306 N--VEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV 361
Query: 387 NYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQ 429
+ +G + D V + E + + SD + R A ++
Sbjct: 362 E-LGLGRHIPRD---QVTAEKLREAVLAVASDPGVAERLAAVR 400
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 270 KPRGS--VLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSN 327
+P G+ V+ V+ GS YRE A PG + V+Q G + P +L N
Sbjct: 227 RPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPG-WHLVLQIG-RKVTPAELGELPDN 284
Query: 328 RGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVN 387
+ +H W PQ IL F++H G + E + P +A P DQ+ NA ++
Sbjct: 285 --VEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-- 338
Query: 388 YIKVGLRVTDDLSETVKKGD-IAEGIERLMSDEEMKTRAAILQVKFEQ 434
GL V L+ D + E L+ D E+ R +Q + Q
Sbjct: 339 ---QGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQ 383
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 332 IHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKV 391
+ +W PQA +L H+ + H G +T+ A+ GVP L++P GD + NA+ V
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAG 353
Query: 392 GLRVTDDLSETVKKGDIAEGIERLMSDEEMKT 423
+ D++S G +RL+++E +
Sbjct: 354 DHLLPDNISPDSVSG----AAKRLLAEESYRA 381
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 334 AWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQY-FNAKLVVNYIKVG 392
W P +L + + H G + M AI G+P L P DQ+ A+ V+ +G
Sbjct: 289 GWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIG 346
Query: 393 LRVTDDLSETVKKGDIAEGIERLMSDEEMKTRA 425
L T D + A+ + RL+ DE ++T A
Sbjct: 347 LVSTSDKVD-------ADLLRRLIGDESLRTAA 372
>pdb|3O7P|A Chain A, Crystal Structure Of The E.Coli Fucose:proton Symporter,
Fucp (N162a)
Length = 438
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 296 GALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHI 345
G LE + PF+ V+ P S + +L ++ G II Q+LIL+++
Sbjct: 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLILSNV 181
>pdb|3O7Q|A Chain A, Crystal Structure Of A Major Facilitator Superfamily (Mfs)
Transporter, Fucp, In The Outward Conformation
Length = 438
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 296 GALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHI 345
G LE + PF+ V+ P S + +L ++ G II Q+LIL+++
Sbjct: 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,913,299
Number of Sequences: 62578
Number of extensions: 501641
Number of successful extensions: 931
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 21
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)