Query 046077
Match_columns 456
No_of_seqs 145 out of 1702
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.8E-67 1.5E-71 516.7 38.6 434 2-455 9-473 (477)
2 PLN02992 coniferyl-alcohol glu 100.0 1.7E-65 3.6E-70 503.6 39.5 419 2-454 5-470 (481)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.7E-65 8E-70 500.9 41.1 417 3-453 8-450 (451)
4 PLN02764 glycosyltransferase f 100.0 2.6E-65 5.7E-70 497.8 39.3 416 2-455 5-447 (453)
5 PLN02562 UDP-glycosyltransfera 100.0 3.5E-65 7.5E-70 502.7 40.2 420 4-451 8-447 (448)
6 PLN02173 UDP-glucosyl transfer 100.0 3.8E-65 8.3E-70 498.4 40.1 427 3-452 6-447 (449)
7 PLN00414 glycosyltransferase f 100.0 3.3E-65 7.2E-70 500.5 39.3 409 2-454 4-441 (446)
8 PLN02208 glycosyltransferase f 100.0 2.6E-65 5.5E-70 500.8 37.9 410 2-454 4-440 (442)
9 PLN02670 transferase, transfer 100.0 5.4E-65 1.2E-69 499.6 39.0 427 3-454 7-466 (472)
10 PLN03004 UDP-glycosyltransfera 100.0 5E-65 1.1E-69 497.9 36.2 414 1-441 2-449 (451)
11 PLN02210 UDP-glucosyl transfer 100.0 2E-64 4.3E-69 497.7 39.3 429 2-452 8-454 (456)
12 PLN02554 UDP-glycosyltransfera 100.0 2.6E-64 5.7E-69 502.0 37.8 430 1-455 1-480 (481)
13 PLN02207 UDP-glycosyltransfera 100.0 5.5E-64 1.2E-68 492.0 39.4 427 1-454 1-466 (468)
14 PLN02534 UDP-glycosyltransfera 100.0 4.5E-64 9.7E-69 495.5 39.0 431 3-453 9-486 (491)
15 PLN03015 UDP-glucosyl transfer 100.0 4.8E-64 1E-68 490.4 38.5 418 1-451 2-466 (470)
16 PLN02555 limonoid glucosyltran 100.0 9.1E-64 2E-68 492.7 39.3 430 2-453 7-469 (480)
17 PLN00164 glucosyltransferase; 100.0 1.6E-63 3.6E-68 494.3 38.8 424 1-454 2-474 (480)
18 PLN03007 UDP-glucosyltransfera 100.0 1.7E-63 3.7E-68 496.8 39.0 430 2-454 5-481 (482)
19 PLN02152 indole-3-acetate beta 100.0 1.9E-63 4E-68 487.3 37.5 423 1-451 1-454 (455)
20 PLN02167 UDP-glycosyltransfera 100.0 2.5E-62 5.5E-67 487.0 37.9 428 2-453 3-472 (475)
21 PLN02448 UDP-glycosyltransfera 100.0 5E-62 1.1E-66 483.9 39.6 421 2-453 10-457 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.9E-43 6.3E-48 351.9 32.6 398 4-454 22-467 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 8.3E-43 1.8E-47 343.6 28.7 375 8-450 1-389 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 1.4E-44 3.1E-49 367.5 11.3 393 4-454 2-444 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 8.6E-42 1.9E-46 337.9 25.1 378 3-449 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 3.8E-40 8.3E-45 320.9 19.7 385 2-451 1-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.3E-40 2.9E-45 338.4 14.6 414 3-452 6-454 (496)
28 PRK12446 undecaprenyldiphospho 100.0 8.2E-29 1.8E-33 238.4 30.7 310 3-421 2-328 (352)
29 COG0707 MurG UDP-N-acetylgluco 100.0 1.6E-27 3.5E-32 226.5 30.1 336 3-449 1-352 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 3.2E-23 6.9E-28 198.7 22.2 299 3-415 1-317 (318)
31 PRK00726 murG undecaprenyldiph 99.9 6.3E-21 1.4E-25 185.8 27.7 337 2-452 1-356 (357)
32 TIGR00661 MJ1255 conserved hyp 99.9 6.1E-21 1.3E-25 182.6 21.5 127 272-421 187-317 (321)
33 cd03785 GT1_MurG MurG is an N- 99.9 1.3E-19 2.9E-24 176.1 27.4 323 4-433 1-339 (350)
34 TIGR01133 murG undecaprenyldip 99.8 1.4E-17 3E-22 161.8 27.0 321 3-434 1-337 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 5.6E-18 1.2E-22 165.6 16.9 347 3-449 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.8 4.4E-16 9.6E-21 153.0 26.1 173 263-451 192-369 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 2.7E-15 5.9E-20 140.0 22.2 104 274-384 171-278 (279)
38 TIGR03492 conserved hypothetic 99.7 4.3E-15 9.3E-20 145.4 23.3 324 17-433 11-380 (396)
39 PRK13608 diacylglycerol glucos 99.7 5.4E-14 1.2E-18 138.3 31.1 169 267-451 196-369 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.7 1E-15 2.3E-20 150.4 17.7 349 3-452 2-376 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 1E-17 2.2E-22 144.6 -1.7 142 275-424 1-150 (167)
42 PLN02605 monogalactosyldiacylg 99.6 4.9E-13 1.1E-17 131.3 30.1 178 261-451 194-379 (382)
43 cd03814 GT1_like_2 This family 99.5 2.6E-11 5.7E-16 117.8 29.6 157 274-450 197-362 (364)
44 COG4671 Predicted glycosyl tra 99.5 1.4E-11 3E-16 112.4 22.5 137 272-419 218-366 (400)
45 PLN02871 UDP-sulfoquinovose:DA 99.5 1.6E-10 3.5E-15 116.6 30.5 141 275-432 264-414 (465)
46 COG3980 spsG Spore coat polysa 99.4 3.2E-11 7E-16 106.8 19.2 149 274-432 159-307 (318)
47 PF03033 Glyco_transf_28: Glyc 99.4 7.4E-14 1.6E-18 116.6 1.1 120 5-129 1-133 (139)
48 cd04962 GT1_like_5 This family 99.4 1.6E-09 3.4E-14 106.0 31.3 163 275-452 198-369 (371)
49 cd03808 GT1_cap1E_like This fa 99.3 7.9E-09 1.7E-13 99.7 29.9 326 4-432 1-343 (359)
50 cd03800 GT1_Sucrose_synthase T 99.3 1.2E-08 2.5E-13 100.9 31.3 336 13-431 21-381 (398)
51 cd03823 GT1_ExpE7_like This fa 99.3 6.4E-09 1.4E-13 100.6 29.0 143 272-429 189-340 (359)
52 cd03817 GT1_UGDG_like This fam 99.3 2.7E-09 5.8E-14 103.8 26.1 141 274-431 202-356 (374)
53 cd03794 GT1_wbuB_like This fam 99.3 4.3E-09 9.3E-14 102.8 27.1 145 272-432 218-379 (394)
54 cd03801 GT1_YqgM_like This fam 99.3 1.6E-08 3.5E-13 97.7 30.4 339 13-450 14-372 (374)
55 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 6.8E-10 1.5E-14 108.4 18.3 140 272-425 197-344 (363)
56 PRK10307 putative glycosyl tra 99.2 7.7E-08 1.7E-12 95.7 32.3 163 274-454 229-408 (412)
57 PRK05749 3-deoxy-D-manno-octul 99.2 1.3E-08 2.8E-13 101.6 24.7 95 330-434 304-404 (425)
58 cd03820 GT1_amsD_like This fam 99.2 6.2E-08 1.3E-12 93.0 28.7 147 275-434 179-335 (348)
59 cd03798 GT1_wlbH_like This fam 99.2 6.5E-08 1.4E-12 93.7 28.8 342 12-452 13-375 (377)
60 TIGR00236 wecB UDP-N-acetylglu 99.1 6.2E-09 1.3E-13 101.7 18.6 326 4-428 2-344 (365)
61 cd03822 GT1_ecORF704_like This 99.1 2.7E-07 5.8E-12 89.6 29.9 160 274-449 185-363 (366)
62 cd03816 GT1_ALG1_like This fam 99.1 3.1E-07 6.7E-12 91.3 30.6 145 272-434 230-400 (415)
63 cd03795 GT1_like_4 This family 99.1 1.5E-07 3.3E-12 91.3 27.2 140 275-431 192-345 (357)
64 TIGR03449 mycothiol_MshA UDP-N 99.1 4.7E-07 1E-11 89.8 30.4 164 274-451 219-399 (405)
65 cd03818 GT1_ExpC_like This fam 99.0 3.4E-07 7.4E-12 90.6 29.0 92 327-430 280-378 (396)
66 cd03796 GT1_PIG-A_like This fa 99.0 2.4E-07 5.3E-12 91.7 26.9 129 273-419 192-334 (398)
67 cd03821 GT1_Bme6_like This fam 99.0 5.1E-07 1.1E-11 87.6 27.4 144 273-432 202-359 (375)
68 cd03799 GT1_amsK_like This is 99.0 3.8E-07 8.2E-12 88.4 26.1 146 273-430 178-339 (355)
69 PRK14089 ipid-A-disaccharide s 99.0 1.7E-08 3.7E-13 96.3 16.1 161 274-447 168-344 (347)
70 cd03819 GT1_WavL_like This fam 99.0 1.3E-06 2.8E-11 84.8 29.5 148 273-432 184-345 (355)
71 cd03811 GT1_WabH_like This fam 99.0 3.4E-07 7.3E-12 87.9 25.2 142 273-427 188-341 (353)
72 cd04951 GT1_WbdM_like This fam 99.0 3E-07 6.4E-12 89.4 25.0 156 274-449 188-356 (360)
73 cd03825 GT1_wcfI_like This fam 98.9 5.8E-06 1.3E-10 80.4 32.9 112 327-452 243-363 (365)
74 PRK09922 UDP-D-galactose:(gluc 98.9 3.6E-07 7.7E-12 89.1 21.5 160 275-450 181-355 (359)
75 cd04955 GT1_like_6 This family 98.9 3.8E-06 8.2E-11 81.7 28.5 155 277-450 196-361 (363)
76 cd03805 GT1_ALG2_like This fam 98.8 1.9E-06 4.2E-11 85.0 25.4 143 273-429 210-375 (392)
77 cd03807 GT1_WbnK_like This fam 98.8 4.8E-06 1E-10 80.5 27.7 159 274-449 193-362 (365)
78 cd05844 GT1_like_7 Glycosyltra 98.8 7.9E-07 1.7E-11 86.8 20.3 140 275-429 189-347 (367)
79 cd03802 GT1_AviGT4_like This f 98.8 1E-05 2.2E-10 77.8 27.5 127 275-418 172-308 (335)
80 cd03809 GT1_mtfB_like This fam 98.8 1.8E-06 4E-11 83.7 22.1 155 275-447 196-363 (365)
81 KOG3349 Predicted glycosyltran 98.8 6.8E-08 1.5E-12 77.4 9.4 118 274-395 4-132 (170)
82 COG1519 KdtA 3-deoxy-D-manno-o 98.8 3.2E-06 6.9E-11 80.4 22.2 76 351-435 328-403 (419)
83 TIGR02472 sucr_P_syn_N sucrose 98.7 3E-05 6.5E-10 77.8 30.6 112 327-450 316-437 (439)
84 TIGR02149 glgA_Coryne glycogen 98.7 6.5E-05 1.4E-09 73.9 31.4 168 275-453 202-386 (388)
85 PF04007 DUF354: Protein of un 98.7 9.2E-06 2E-10 77.1 23.9 137 260-416 167-308 (335)
86 cd03812 GT1_CapH_like This fam 98.7 7.5E-06 1.6E-10 79.5 24.0 142 273-428 191-341 (358)
87 TIGR02468 sucrsPsyn_pln sucros 98.6 3.2E-05 6.8E-10 82.8 28.3 175 261-451 468-668 (1050)
88 TIGR03088 stp2 sugar transfera 98.6 3.3E-05 7.2E-10 75.7 27.0 161 273-451 193-370 (374)
89 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 4.4E-06 9.4E-11 81.3 20.2 319 3-421 1-341 (365)
90 TIGR02470 sucr_synth sucrose s 98.6 0.00015 3.3E-09 75.9 31.9 92 328-429 619-724 (784)
91 PRK01021 lpxB lipid-A-disaccha 98.6 1.1E-05 2.3E-10 81.2 22.3 198 207-434 369-587 (608)
92 TIGR03087 stp1 sugar transfera 98.6 1.6E-05 3.5E-10 78.7 22.5 156 275-451 225-394 (397)
93 PLN02275 transferase, transfer 98.5 0.00012 2.6E-09 71.7 26.7 116 3-124 5-133 (371)
94 PRK15427 colanic acid biosynth 98.5 0.00016 3.5E-09 71.6 27.2 162 274-452 222-404 (406)
95 PF02684 LpxB: Lipid-A-disacch 98.5 3.9E-06 8.5E-11 80.7 14.5 198 207-435 141-357 (373)
96 PF02350 Epimerase_2: UDP-N-ac 98.4 6E-06 1.3E-10 79.6 13.2 138 271-424 178-324 (346)
97 PRK15484 lipopolysaccharide 1, 98.4 0.0036 7.8E-08 61.5 33.8 112 328-452 257-376 (380)
98 PLN00142 sucrose synthase 98.4 0.00037 8.1E-09 73.2 26.7 92 328-429 642-747 (815)
99 cd03792 GT1_Trehalose_phosphor 98.3 0.0011 2.4E-08 64.9 28.2 171 264-452 181-370 (372)
100 cd03806 GT1_ALG11_like This fa 98.3 0.00018 4E-09 71.5 22.1 80 327-419 304-393 (419)
101 PLN02846 digalactosyldiacylgly 98.3 0.00031 6.7E-09 69.8 23.1 123 276-419 230-364 (462)
102 cd03804 GT1_wbaZ_like This fam 98.2 4E-05 8.8E-10 74.4 15.7 136 276-430 197-339 (351)
103 COG0381 WecB UDP-N-acetylgluco 98.2 0.0002 4.3E-09 67.9 19.0 332 1-428 1-351 (383)
104 PRK15179 Vi polysaccharide bio 98.2 0.00061 1.3E-08 71.3 23.5 142 275-429 518-674 (694)
105 PRK00654 glgA glycogen synthas 98.2 0.0019 4.1E-08 65.3 26.7 145 263-417 271-427 (466)
106 cd04950 GT1_like_1 Glycosyltra 98.2 0.0026 5.6E-08 62.4 26.8 152 275-453 206-371 (373)
107 COG0763 LpxB Lipid A disacchar 98.0 0.0002 4.4E-09 67.6 15.5 215 206-451 143-379 (381)
108 TIGR02095 glgA glycogen/starch 98.0 0.0055 1.2E-07 62.1 27.0 160 275-451 292-470 (473)
109 PLN02316 synthase/transferase 98.0 0.01 2.2E-07 64.3 28.2 136 275-418 841-998 (1036)
110 COG5017 Uncharacterized conser 97.9 0.00015 3.2E-09 57.4 10.2 108 276-395 2-121 (161)
111 cd04949 GT1_gtfA_like This fam 97.9 0.0017 3.6E-08 63.6 20.2 146 275-430 205-357 (372)
112 cd04946 GT1_AmsK_like This fam 97.9 0.00029 6.2E-09 69.9 14.7 146 274-431 230-390 (407)
113 cd03791 GT1_Glycogen_synthase_ 97.9 0.004 8.7E-08 63.2 23.3 134 274-417 296-441 (476)
114 cd01635 Glycosyltransferase_GT 97.9 0.00078 1.7E-08 60.3 16.1 52 327-379 160-218 (229)
115 PLN02949 transferase, transfer 97.9 0.012 2.6E-07 59.2 25.3 112 327-452 334-455 (463)
116 PF00534 Glycos_transf_1: Glyc 97.8 0.00022 4.7E-09 61.4 10.9 147 272-430 13-170 (172)
117 PF13844 Glyco_transf_41: Glyc 97.6 0.00078 1.7E-08 66.4 12.2 147 272-426 283-438 (468)
118 TIGR02918 accessory Sec system 97.6 0.022 4.7E-07 57.9 22.9 163 275-452 320-498 (500)
119 PLN02501 digalactosyldiacylgly 97.4 0.084 1.8E-06 54.6 23.4 79 329-422 602-685 (794)
120 cd03813 GT1_like_3 This family 97.3 0.012 2.6E-07 59.7 16.5 147 274-431 293-455 (475)
121 PRK15490 Vi polysaccharide bio 97.2 0.33 7.1E-06 49.4 24.9 63 327-396 454-521 (578)
122 TIGR02193 heptsyl_trn_I lipopo 97.0 0.036 7.9E-07 52.9 15.8 107 4-121 1-110 (319)
123 PRK09814 beta-1,6-galactofuran 96.9 0.01 2.2E-07 57.1 11.6 109 327-449 206-331 (333)
124 PHA01633 putative glycosyl tra 96.9 0.064 1.4E-06 51.3 16.3 84 327-417 200-306 (335)
125 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0026 5.7E-08 52.1 6.1 127 275-418 3-135 (135)
126 PF13477 Glyco_trans_4_2: Glyc 96.7 0.027 5.9E-07 46.3 11.2 101 4-123 1-105 (139)
127 PF06258 Mito_fiss_Elm1: Mitoc 96.7 0.42 9.1E-06 45.3 20.1 39 337-376 221-259 (311)
128 COG3914 Spy Predicted O-linked 96.5 0.061 1.3E-06 53.6 13.1 136 271-413 427-573 (620)
129 PRK10422 lipopolysaccharide co 96.3 0.89 1.9E-05 44.1 20.5 106 2-122 5-113 (352)
130 PF13579 Glyco_trans_4_4: Glyc 96.1 0.0071 1.5E-07 50.7 4.5 92 19-123 7-102 (160)
131 COG1817 Uncharacterized protei 96.1 1.2 2.7E-05 41.2 19.6 101 11-126 8-113 (346)
132 TIGR02201 heptsyl_trn_III lipo 95.7 1.1 2.4E-05 43.2 18.3 105 4-122 1-108 (344)
133 KOG4626 O-linked N-acetylgluco 95.7 0.14 3E-06 51.5 11.5 146 272-426 757-912 (966)
134 PHA01630 putative group 1 glyc 95.7 0.19 4.1E-06 48.2 12.5 109 334-452 196-329 (331)
135 PRK14098 glycogen synthase; Pr 95.7 0.18 3.8E-06 51.3 12.9 139 275-423 308-459 (489)
136 PRK10017 colanic acid biosynth 95.6 0.53 1.1E-05 46.8 15.5 163 263-434 224-409 (426)
137 PRK10964 ADP-heptose:LPS hepto 95.6 0.8 1.7E-05 43.8 16.5 45 3-47 1-47 (322)
138 PF13524 Glyco_trans_1_2: Glyc 95.3 0.21 4.5E-06 37.7 9.2 81 353-448 9-91 (92)
139 PF13439 Glyco_transf_4: Glyco 95.0 0.32 6.9E-06 41.2 10.9 98 13-126 12-110 (177)
140 TIGR02400 trehalose_OtsA alpha 95.0 2.1 4.4E-05 43.2 17.6 105 332-452 340-455 (456)
141 PRK10916 ADP-heptose:LPS hepto 94.9 3.9 8.5E-05 39.5 20.0 103 3-122 1-106 (348)
142 cd03789 GT1_LPS_heptosyltransf 94.9 1.9 4.2E-05 40.1 16.4 102 4-122 1-105 (279)
143 PF01975 SurE: Survival protei 94.7 0.26 5.7E-06 43.2 9.2 116 3-126 1-134 (196)
144 PRK10125 putative glycosyl tra 94.4 1.2 2.5E-05 44.2 14.3 114 276-412 243-365 (405)
145 PF06722 DUF1205: Protein of u 94.3 0.045 9.8E-07 41.8 3.1 53 262-314 29-86 (97)
146 COG2099 CobK Precorrin-6x redu 93.9 4.7 0.0001 36.4 16.3 93 1-123 1-99 (257)
147 PRK14099 glycogen synthase; Pr 93.8 1.9 4.1E-05 43.9 14.6 148 275-429 296-458 (485)
148 PRK13932 stationary phase surv 93.5 1.6 3.4E-05 39.9 12.0 115 1-125 4-133 (257)
149 COG1618 Predicted nucleotide k 93.4 0.61 1.3E-05 38.9 8.3 59 1-64 4-62 (179)
150 PLN02939 transferase, transfer 93.4 3.4 7.3E-05 44.9 15.9 145 275-427 780-944 (977)
151 TIGR02853 spore_dpaA dipicolin 93.3 6.3 0.00014 37.0 16.2 100 17-123 11-119 (287)
152 TIGR02398 gluc_glyc_Psyn gluco 93.0 1.9 4.1E-05 43.5 13.0 108 330-453 364-482 (487)
153 TIGR02195 heptsyl_trn_II lipop 92.9 9 0.00019 36.7 20.7 102 4-122 1-105 (334)
154 COG0859 RfaF ADP-heptose:LPS h 92.7 6.4 0.00014 37.8 15.8 105 2-122 1-107 (334)
155 TIGR03713 acc_sec_asp1 accesso 92.7 4.5 9.7E-05 41.4 15.3 101 328-447 409-515 (519)
156 PRK08057 cobalt-precorrin-6x r 92.5 0.75 1.6E-05 42.0 8.5 92 1-123 1-98 (248)
157 cd03788 GT1_TPS Trehalose-6-Ph 92.4 2.1 4.6E-05 43.2 12.5 104 332-451 345-459 (460)
158 COG4370 Uncharacterized protei 91.9 1.1 2.3E-05 41.4 8.6 94 333-435 300-397 (412)
159 PF12000 Glyco_trans_4_3: Gkyc 91.4 3.1 6.8E-05 35.5 10.5 87 28-124 1-95 (171)
160 PLN03063 alpha,alpha-trehalose 91.1 3.1 6.7E-05 45.0 12.7 102 334-453 362-477 (797)
161 COG0496 SurE Predicted acid ph 91.1 1.7 3.8E-05 39.3 9.1 98 19-126 16-126 (252)
162 TIGR00715 precor6x_red precorr 90.9 0.54 1.2E-05 43.1 5.9 91 3-123 1-98 (256)
163 COG0438 RfaG Glycosyltransfera 90.3 14 0.0003 34.5 15.5 141 275-427 200-351 (381)
164 TIGR02919 accessory Sec system 89.9 9 0.0002 38.3 13.9 141 271-434 281-427 (438)
165 TIGR00087 surE 5'/3'-nucleotid 89.9 3.4 7.3E-05 37.6 10.0 98 19-125 16-128 (244)
166 PRK14501 putative bifunctional 88.9 2.9 6.3E-05 44.9 10.4 107 331-453 345-462 (726)
167 COG3660 Predicted nucleoside-d 88.9 18 0.00039 33.0 19.5 96 275-372 164-271 (329)
168 cd02067 B12-binding B12 bindin 88.2 2.9 6.4E-05 33.2 7.6 36 4-39 1-36 (119)
169 PF02571 CbiJ: Precorrin-6x re 88.0 1.1 2.4E-05 40.9 5.6 93 3-123 1-99 (249)
170 PRK12342 hypothetical protein; 87.7 2.4 5.3E-05 38.7 7.6 94 19-125 40-144 (254)
171 PF08660 Alg14: Oligosaccharid 87.5 1.9 4.2E-05 36.8 6.4 106 8-123 3-127 (170)
172 KOG1111 N-acetylglucosaminyltr 87.1 29 0.00063 33.2 15.7 83 288-372 210-301 (426)
173 PRK13934 stationary phase surv 87.0 6.3 0.00014 36.2 9.7 98 18-125 15-127 (266)
174 PF07429 Glyco_transf_56: 4-al 86.9 9.9 0.00021 36.2 11.1 134 275-417 185-332 (360)
175 TIGR02370 pyl_corrinoid methyl 84.2 4.6 0.0001 35.5 7.4 104 3-120 85-189 (197)
176 PRK13933 stationary phase surv 84.2 12 0.00026 34.3 10.1 98 19-125 16-129 (253)
177 PRK02261 methylaspartate mutas 83.2 2.7 5.8E-05 34.5 5.1 40 1-40 1-41 (137)
178 PF02310 B12-binding: B12 bind 83.0 8.4 0.00018 30.5 8.0 36 4-39 2-37 (121)
179 PRK03359 putative electron tra 82.9 6.8 0.00015 35.9 8.1 94 19-125 41-147 (256)
180 PRK13935 stationary phase surv 82.6 12 0.00026 34.2 9.5 98 19-125 16-128 (253)
181 PRK02797 4-alpha-L-fucosyltran 82.1 15 0.00031 34.6 9.8 130 276-413 147-289 (322)
182 smart00851 MGS MGS-like domain 81.7 3.9 8.4E-05 30.7 5.2 80 19-122 2-90 (90)
183 KOG3062 RNA polymerase II elon 81.3 16 0.00034 32.6 9.1 81 3-106 2-83 (281)
184 PRK13931 stationary phase surv 80.7 20 0.00043 33.0 10.3 98 19-125 16-129 (261)
185 PRK07206 hypothetical protein; 80.7 7.6 0.00016 38.6 8.4 94 1-120 1-96 (416)
186 PRK00346 surE 5'(3')-nucleotid 80.6 19 0.00041 32.9 10.1 95 19-125 16-124 (250)
187 PRK05986 cob(I)alamin adenolsy 79.9 22 0.00048 30.9 9.8 99 4-106 24-125 (191)
188 cd02070 corrinoid_protein_B12- 77.9 13 0.00028 32.7 8.1 37 3-39 83-119 (201)
189 TIGR00725 conserved hypothetic 77.7 14 0.0003 31.2 7.8 99 261-374 21-123 (159)
190 PF00731 AIRC: AIR carboxylase 76.0 40 0.00086 28.1 9.7 138 276-434 3-148 (150)
191 TIGR01285 nifN nitrogenase mol 74.8 14 0.00029 37.0 8.1 86 3-123 312-397 (432)
192 COG1703 ArgK Putative periplas 74.7 46 0.00099 31.2 10.6 107 4-122 53-171 (323)
193 PRK06732 phosphopantothenate-- 74.5 18 0.00039 32.6 8.2 34 275-308 152-186 (229)
194 PRK09620 hypothetical protein; 73.9 22 0.00048 32.0 8.5 20 20-39 33-52 (229)
195 PRK06718 precorrin-2 dehydroge 73.4 64 0.0014 28.4 11.5 145 272-435 10-165 (202)
196 PF04413 Glycos_transf_N: 3-De 73.2 3.3 7.1E-05 36.0 2.9 94 9-124 27-125 (186)
197 PLN02470 acetolactate synthase 73.1 18 0.00039 37.8 8.9 92 279-373 2-109 (585)
198 TIGR00730 conserved hypothetic 72.9 27 0.00058 30.1 8.4 97 262-373 23-133 (178)
199 PF02441 Flavoprotein: Flavopr 72.6 5.1 0.00011 32.4 3.8 45 3-48 1-45 (129)
200 PF02844 GARS_N: Phosphoribosy 72.6 4.5 9.8E-05 31.0 3.2 86 3-122 1-91 (100)
201 cd07039 TPP_PYR_POX Pyrimidine 72.5 42 0.0009 28.4 9.5 27 347-373 64-96 (164)
202 COG2894 MinD Septum formation 71.8 40 0.00087 30.0 9.1 37 4-40 3-41 (272)
203 cd03793 GT1_Glycogen_synthase_ 71.8 40 0.00087 34.8 10.5 78 338-418 468-552 (590)
204 TIGR02015 BchY chlorophyllide 71.6 20 0.00043 35.7 8.3 93 4-123 287-379 (422)
205 cd01424 MGS_CPS_II Methylglyox 71.5 7.8 0.00017 30.3 4.5 84 14-122 10-100 (110)
206 COG2086 FixA Electron transfer 71.4 14 0.0003 33.9 6.6 92 19-123 42-144 (260)
207 cd00561 CobA_CobO_BtuR ATP:cor 70.7 64 0.0014 27.2 10.5 99 4-106 4-105 (159)
208 PLN03064 alpha,alpha-trehalose 70.2 55 0.0012 36.1 11.8 105 334-453 446-561 (934)
209 PRK05920 aromatic acid decarbo 70.0 6.3 0.00014 34.7 4.0 44 1-45 2-45 (204)
210 PF04127 DFP: DNA / pantothena 69.8 19 0.00042 31.2 6.9 22 19-40 32-53 (185)
211 PRK07313 phosphopantothenoylcy 69.5 74 0.0016 27.5 10.9 136 275-416 4-178 (182)
212 cd07038 TPP_PYR_PDC_IPDC_like 69.2 31 0.00067 29.1 8.0 27 347-373 60-92 (162)
213 cd01965 Nitrogenase_MoFe_beta_ 68.9 9.6 0.00021 38.1 5.6 96 3-123 300-395 (428)
214 cd01423 MGS_CPS_I_III Methylgl 67.8 17 0.00036 28.7 5.7 87 15-122 11-106 (116)
215 cd01980 Chlide_reductase_Y Chl 67.8 33 0.00072 34.1 9.1 93 4-123 282-374 (416)
216 cd01974 Nitrogenase_MoFe_beta 67.8 6.8 0.00015 39.2 4.3 98 3-123 304-401 (435)
217 cd00532 MGS-like MGS-like doma 67.4 10 0.00022 29.8 4.3 84 15-122 10-104 (112)
218 PF05159 Capsule_synth: Capsul 67.0 30 0.00064 32.0 8.1 82 289-373 140-225 (269)
219 PF04464 Glyphos_transf: CDP-G 66.8 5.4 0.00012 38.9 3.3 109 327-446 251-366 (369)
220 PRK08229 2-dehydropantoate 2-r 66.7 5.4 0.00012 38.4 3.2 35 1-40 1-35 (341)
221 PRK04885 ppnK inorganic polyph 66.5 10 0.00022 35.1 4.7 53 346-418 35-93 (265)
222 cd02071 MM_CoA_mut_B12_BD meth 66.0 66 0.0014 25.6 9.6 37 4-40 1-37 (122)
223 PF02951 GSH-S_N: Prokaryotic 65.4 11 0.00023 30.1 4.1 39 3-41 1-42 (119)
224 PRK11199 tyrA bifunctional cho 65.3 33 0.00072 33.5 8.4 33 2-39 98-131 (374)
225 PRK13768 GTPase; Provisional 64.9 38 0.00083 31.0 8.3 41 1-41 1-41 (253)
226 PRK06395 phosphoribosylamine-- 64.9 21 0.00046 35.7 7.1 33 1-38 1-33 (435)
227 PF10820 DUF2543: Protein of u 64.6 21 0.00045 24.9 4.7 43 408-454 36-78 (81)
228 PRK05647 purN phosphoribosylgl 64.4 20 0.00044 31.5 6.1 84 3-104 2-88 (200)
229 COG4394 Uncharacterized protei 64.0 1.3E+02 0.0027 28.1 11.3 31 10-40 11-42 (370)
230 PRK13195 pyrrolidone-carboxyla 63.8 17 0.00037 32.5 5.5 65 3-106 2-71 (222)
231 TIGR01470 cysG_Nterm siroheme 63.5 1.1E+02 0.0023 27.1 11.1 148 272-435 9-165 (205)
232 PRK04940 hypothetical protein; 63.4 27 0.00059 30.1 6.4 31 96-126 60-91 (180)
233 COG0287 TyrA Prephenate dehydr 62.4 16 0.00035 34.1 5.3 40 1-45 2-41 (279)
234 COG1435 Tdk Thymidine kinase [ 62.2 59 0.0013 28.4 8.2 103 5-123 7-116 (201)
235 PRK02155 ppnK NAD(+)/NADH kina 62.1 13 0.00029 34.8 4.8 53 346-418 63-119 (291)
236 cd07035 TPP_PYR_POX_like Pyrim 62.1 90 0.0019 25.8 10.2 27 347-373 60-92 (155)
237 PF05728 UPF0227: Uncharacteri 61.0 17 0.00037 31.6 5.0 48 75-127 43-91 (187)
238 PRK13789 phosphoribosylamine-- 61.0 17 0.00037 36.3 5.5 90 2-121 4-96 (426)
239 COG1484 DnaC DNA replication p 60.8 8.1 0.00017 35.5 3.0 44 3-46 106-149 (254)
240 PF07355 GRDB: Glycine/sarcosi 60.5 38 0.00083 32.3 7.4 76 12-123 30-117 (349)
241 PRK13982 bifunctional SbtC-lik 60.3 44 0.00095 33.7 8.2 38 3-40 257-306 (475)
242 PF09314 DUF1972: Domain of un 59.8 1.2E+02 0.0025 26.4 11.1 58 3-63 2-64 (185)
243 PRK00784 cobyric acid synthase 59.6 1.1E+02 0.0023 31.3 11.1 38 1-38 1-39 (488)
244 PLN02929 NADH kinase 59.5 16 0.00035 34.3 4.8 66 345-418 63-137 (301)
245 PF01470 Peptidase_C15: Pyrogl 59.0 26 0.00056 30.9 5.8 65 3-103 1-67 (202)
246 PF01075 Glyco_transf_9: Glyco 58.5 20 0.00043 32.5 5.3 97 271-372 103-208 (247)
247 PF06506 PrpR_N: Propionate ca 58.1 10 0.00023 32.5 3.1 70 343-417 31-123 (176)
248 PRK12475 thiamine/molybdopteri 58.0 28 0.00061 33.5 6.3 33 2-39 24-57 (338)
249 PRK14077 pnk inorganic polypho 57.8 16 0.00034 34.2 4.4 53 346-418 64-120 (287)
250 PF01012 ETF: Electron transfe 57.4 31 0.00067 29.1 5.9 91 19-125 20-122 (164)
251 PRK04539 ppnK inorganic polyph 57.3 24 0.00052 33.2 5.6 53 346-418 68-124 (296)
252 PRK06849 hypothetical protein; 57.1 36 0.00078 33.4 7.1 35 2-40 4-38 (389)
253 PRK02649 ppnK inorganic polyph 57.1 17 0.00036 34.4 4.5 54 346-419 68-125 (305)
254 PRK07313 phosphopantothenoylcy 57.0 11 0.00025 32.5 3.1 43 3-46 2-44 (182)
255 KOG2941 Beta-1,4-mannosyltrans 56.7 1.5E+02 0.0032 28.5 10.3 119 2-126 12-138 (444)
256 PRK08305 spoVFB dipicolinate s 56.5 16 0.00035 31.9 4.0 42 2-43 5-46 (196)
257 COG0132 BioD Dethiobiotin synt 56.5 1.1E+02 0.0024 27.4 9.3 37 1-37 1-38 (223)
258 PRK10427 putative PTS system f 56.0 26 0.00056 27.7 4.7 39 1-39 1-42 (114)
259 TIGR00708 cobA cob(I)alamin ad 55.7 1.2E+02 0.0026 26.0 9.1 94 4-106 7-107 (173)
260 PRK03372 ppnK inorganic polyph 55.5 24 0.00053 33.3 5.3 53 346-418 72-128 (306)
261 PRK12446 undecaprenyldiphospho 55.2 19 0.00041 34.9 4.7 98 274-373 3-121 (352)
262 PF01210 NAD_Gly3P_dh_N: NAD-d 54.9 11 0.00024 31.7 2.6 32 4-40 1-32 (157)
263 PF06925 MGDG_synth: Monogalac 54.3 30 0.00065 29.4 5.3 43 76-125 76-124 (169)
264 cd01715 ETF_alpha The electron 53.9 86 0.0019 26.5 8.1 45 74-125 68-115 (168)
265 PRK06988 putative formyltransf 53.7 17 0.00036 34.6 4.0 34 1-39 1-34 (312)
266 PRK14106 murD UDP-N-acetylmura 53.7 46 0.001 33.3 7.4 32 3-39 6-37 (450)
267 PRK06179 short chain dehydroge 53.3 72 0.0016 29.1 8.2 34 3-39 4-37 (270)
268 PRK01911 ppnK inorganic polyph 53.1 23 0.0005 33.2 4.7 53 346-418 64-120 (292)
269 COG0771 MurD UDP-N-acetylmuram 53.0 1.1E+02 0.0023 30.8 9.4 35 2-41 7-41 (448)
270 PRK08591 acetyl-CoA carboxylas 52.7 52 0.0011 33.0 7.6 100 1-122 1-104 (451)
271 KOG0081 GTPase Rab27, small G 52.3 25 0.00053 29.3 4.1 52 74-125 102-163 (219)
272 PLN02935 Bifunctional NADH kin 51.9 26 0.00057 35.3 5.1 53 346-419 262-319 (508)
273 TIGR02195 heptsyl_trn_II lipop 51.9 52 0.0011 31.4 7.2 86 16-125 193-278 (334)
274 cd01968 Nitrogenase_NifE_I Nit 51.9 37 0.00079 33.7 6.2 92 3-123 288-380 (410)
275 PRK05579 bifunctional phosphop 51.5 1.2E+02 0.0025 30.1 9.5 139 273-417 7-182 (399)
276 PF12146 Hydrolase_4: Putative 51.5 36 0.00078 24.7 4.6 35 3-37 16-50 (79)
277 KOG0780 Signal recognition par 51.4 42 0.00092 32.6 6.0 41 5-45 104-144 (483)
278 TIGR01283 nifE nitrogenase mol 51.1 34 0.00073 34.5 5.9 89 3-123 327-419 (456)
279 PRK10867 signal recognition pa 50.9 79 0.0017 31.6 8.3 40 5-44 103-143 (433)
280 cd03466 Nitrogenase_NifN_2 Nit 50.8 71 0.0015 31.9 8.1 35 79-123 362-396 (429)
281 PRK06111 acetyl-CoA carboxylas 50.7 1.5E+02 0.0033 29.6 10.6 100 1-122 1-104 (450)
282 COG0801 FolK 7,8-dihydro-6-hyd 50.6 34 0.00075 28.8 4.8 35 275-309 3-37 (160)
283 PRK14478 nitrogenase molybdenu 50.6 51 0.0011 33.5 7.1 88 3-122 325-416 (475)
284 PF10087 DUF2325: Uncharacteri 50.3 36 0.00078 25.8 4.7 36 96-131 48-89 (97)
285 PRK13193 pyrrolidone-carboxyla 50.3 61 0.0013 28.7 6.7 63 4-105 2-69 (209)
286 COG4081 Uncharacterized protei 50.2 28 0.0006 27.8 3.9 44 2-45 3-47 (148)
287 cd07037 TPP_PYR_MenD Pyrimidin 50.2 29 0.00062 29.4 4.5 27 347-373 61-93 (162)
288 cd01977 Nitrogenase_VFe_alpha 49.9 33 0.00071 34.1 5.5 93 2-123 288-382 (415)
289 PRK07525 sulfoacetaldehyde ace 49.8 1.2E+02 0.0025 31.8 9.8 28 346-373 68-101 (588)
290 PRK13196 pyrrolidone-carboxyla 49.8 52 0.0011 29.2 6.2 68 3-106 2-71 (211)
291 COG4126 Hydantoin racemase [Am 49.7 75 0.0016 28.2 6.9 105 8-121 73-201 (230)
292 PF08433 KTI12: Chromatin asso 49.7 1.8E+02 0.004 26.9 10.0 108 3-135 2-115 (270)
293 TIGR00661 MJ1255 conserved hyp 49.6 71 0.0015 30.3 7.7 32 341-372 88-119 (321)
294 PRK02231 ppnK inorganic polyph 49.2 19 0.00041 33.4 3.5 52 346-417 42-97 (272)
295 PRK13194 pyrrolidone-carboxyla 48.9 59 0.0013 28.8 6.3 67 3-105 1-69 (208)
296 TIGR02329 propionate_PrpR prop 48.8 41 0.00088 34.6 6.1 102 13-126 36-172 (526)
297 TIGR02852 spore_dpaB dipicolin 48.7 24 0.00052 30.6 3.8 40 3-42 1-40 (187)
298 PF13460 NAD_binding_10: NADH( 48.6 88 0.0019 26.5 7.5 86 10-125 4-97 (183)
299 PRK05632 phosphate acetyltrans 48.4 1.8E+02 0.0039 31.1 11.1 106 1-127 1-116 (684)
300 PRK08322 acetolactate synthase 48.2 1.1E+02 0.0023 31.7 9.3 28 346-373 63-96 (547)
301 PF14626 RNase_Zc3h12a_2: Zc3h 47.9 22 0.00048 28.0 3.0 32 16-47 9-40 (122)
302 cd01985 ETF The electron trans 47.8 56 0.0012 28.0 6.1 94 18-124 23-122 (181)
303 COG1066 Sms Predicted ATP-depe 47.5 15 0.00033 35.8 2.6 39 5-44 96-134 (456)
304 PRK01175 phosphoribosylformylg 47.4 1.7E+02 0.0037 27.0 9.4 56 1-63 2-57 (261)
305 COG2874 FlaH Predicted ATPases 47.3 38 0.00081 30.1 4.7 89 12-109 38-136 (235)
306 TIGR01425 SRP54_euk signal rec 47.0 91 0.002 31.1 7.9 39 4-42 102-140 (429)
307 cd03115 SRP The signal recogni 46.3 1.8E+02 0.0039 24.5 9.4 38 5-42 3-40 (173)
308 PRK06276 acetolactate synthase 46.2 1.3E+02 0.0027 31.6 9.5 27 347-373 64-96 (586)
309 COG1797 CobB Cobyrinic acid a, 46.0 1.3E+02 0.0029 29.8 8.6 105 9-131 8-125 (451)
310 PRK12429 3-hydroxybutyrate deh 46.0 62 0.0013 29.2 6.5 36 1-39 2-37 (258)
311 PRK08220 2,3-dihydroxybenzoate 46.0 1.2E+02 0.0026 27.2 8.3 34 4-40 9-42 (252)
312 PRK06456 acetolactate synthase 45.8 99 0.0022 32.2 8.6 27 347-373 69-101 (572)
313 PRK01185 ppnK inorganic polyph 45.7 32 0.0007 31.9 4.4 53 346-418 52-105 (271)
314 PRK05595 replicative DNA helic 45.7 41 0.00088 33.8 5.5 38 4-41 203-241 (444)
315 TIGR02655 circ_KaiC circadian 45.5 1.7E+02 0.0038 29.7 10.0 105 5-123 266-395 (484)
316 PRK05234 mgsA methylglyoxal sy 45.3 1.4E+02 0.003 24.6 7.7 89 12-123 12-112 (142)
317 COG0859 RfaF ADP-heptose:LPS h 45.1 36 0.00077 32.7 4.8 98 4-126 177-279 (334)
318 PRK03501 ppnK inorganic polyph 45.0 41 0.00089 31.1 4.9 53 347-418 40-97 (264)
319 PRK08199 thiamine pyrophosphat 45.0 1.2E+02 0.0027 31.4 9.1 27 346-372 71-103 (557)
320 PRK06079 enoyl-(acyl carrier p 45.0 52 0.0011 29.9 5.7 35 2-38 6-41 (252)
321 cd03784 GT1_Gtf_like This fami 44.9 1E+02 0.0022 30.2 8.2 36 275-312 3-38 (401)
322 PF06506 PrpR_N: Propionate ca 44.6 39 0.00084 29.0 4.5 46 79-131 112-157 (176)
323 TIGR00682 lpxK tetraacyldisacc 44.5 1.6E+02 0.0034 28.0 8.9 35 8-42 36-70 (311)
324 COG0143 MetG Methionyl-tRNA sy 44.4 38 0.00082 34.9 5.0 39 2-40 4-52 (558)
325 PRK11519 tyrosine kinase; Prov 44.3 1.6E+02 0.0035 31.7 10.0 110 4-123 527-666 (719)
326 PRK10916 ADP-heptose:LPS hepto 44.2 37 0.0008 32.7 4.8 86 17-125 200-288 (348)
327 cd01422 MGS Methylglyoxal synt 44.0 57 0.0012 25.7 5.0 87 13-123 8-107 (115)
328 TIGR00347 bioD dethiobiotin sy 44.0 96 0.0021 26.0 6.9 28 9-36 5-32 (166)
329 PRK06270 homoserine dehydrogen 43.9 85 0.0018 30.2 7.2 58 337-395 80-149 (341)
330 KOG0853 Glycosyltransferase [C 43.9 35 0.00075 34.4 4.5 64 358-429 381-444 (495)
331 PRK06321 replicative DNA helic 43.9 67 0.0015 32.5 6.7 37 4-40 228-265 (472)
332 COG0552 FtsY Signal recognitio 43.7 80 0.0017 30.1 6.6 39 5-43 142-180 (340)
333 TIGR00732 dprA DNA protecting 43.4 2.4E+02 0.0052 25.2 10.5 110 275-392 75-208 (220)
334 TIGR01832 kduD 2-deoxy-D-gluco 43.4 64 0.0014 29.0 6.1 35 2-39 4-38 (248)
335 PRK13982 bifunctional SbtC-lik 43.3 3.7E+02 0.008 27.3 11.7 140 272-417 70-247 (475)
336 PRK01077 cobyrinic acid a,c-di 43.2 1.1E+02 0.0024 30.8 8.2 109 1-127 1-124 (451)
337 PF02606 LpxK: Tetraacyldisacc 43.2 1.6E+02 0.0036 28.1 8.9 35 8-42 43-77 (326)
338 PRK05784 phosphoribosylamine-- 42.9 97 0.0021 31.6 7.7 93 3-122 1-98 (486)
339 COG0205 PfkA 6-phosphofructoki 42.8 1.4E+02 0.0031 28.7 8.3 111 1-123 1-124 (347)
340 PRK05876 short chain dehydroge 42.8 85 0.0018 29.0 6.9 34 2-38 5-38 (275)
341 PRK13197 pyrrolidone-carboxyla 42.6 75 0.0016 28.3 6.1 67 3-105 2-70 (215)
342 PRK13886 conjugal transfer pro 42.5 2.1E+02 0.0046 26.0 9.0 40 1-40 1-41 (241)
343 PRK08293 3-hydroxybutyryl-CoA 42.4 1.8E+02 0.0038 27.1 9.0 32 3-39 4-35 (287)
344 PRK08506 replicative DNA helic 42.4 63 0.0014 32.8 6.3 38 4-41 194-231 (472)
345 PRK11269 glyoxylate carboligas 42.2 1.1E+02 0.0024 32.0 8.3 27 347-373 69-101 (591)
346 TIGR01286 nifK nitrogenase mol 42.0 30 0.00065 35.4 3.9 35 79-123 427-461 (515)
347 PRK14075 pnk inorganic polypho 41.7 49 0.0011 30.4 5.0 53 346-418 41-94 (256)
348 PRK08818 prephenate dehydrogen 41.6 2E+02 0.0042 28.2 9.2 32 2-38 4-37 (370)
349 PRK07178 pyruvate carboxylase 41.5 2.3E+02 0.005 28.7 10.2 99 1-122 1-103 (472)
350 COG1748 LYS9 Saccharopine dehy 41.5 69 0.0015 31.4 6.1 53 2-61 1-55 (389)
351 PRK03378 ppnK inorganic polyph 41.4 42 0.0009 31.6 4.5 53 346-418 63-119 (292)
352 PRK07710 acetolactate synthase 41.3 1.3E+02 0.0029 31.2 8.7 28 346-373 78-111 (571)
353 cd03789 GT1_LPS_heptosyltransf 40.5 51 0.0011 30.5 5.0 87 16-125 139-225 (279)
354 TIGR03029 EpsG chain length de 40.2 2.4E+02 0.0053 25.9 9.5 35 4-38 104-140 (274)
355 PRK05973 replicative DNA helic 40.1 23 0.0005 32.1 2.5 38 4-41 66-103 (237)
356 PRK14477 bifunctional nitrogen 40.1 1.9E+02 0.0042 32.1 10.0 94 3-124 321-414 (917)
357 PRK08760 replicative DNA helic 40.0 50 0.0011 33.5 5.1 38 4-41 231-269 (476)
358 COG0503 Apt Adenine/guanine ph 40.0 1.5E+02 0.0032 25.5 7.4 28 96-123 53-82 (179)
359 PRK06194 hypothetical protein; 39.8 1E+02 0.0022 28.4 7.0 32 4-38 7-38 (287)
360 TIGR00173 menD 2-succinyl-5-en 39.8 1.1E+02 0.0023 30.7 7.4 26 347-372 64-95 (432)
361 cd02069 methionine_synthase_B1 39.6 56 0.0012 29.1 4.8 38 3-40 89-126 (213)
362 PRK14076 pnk inorganic polypho 39.5 44 0.00095 34.8 4.7 53 346-418 348-404 (569)
363 COG2109 BtuR ATP:corrinoid ade 39.5 2.2E+02 0.0049 24.8 8.1 99 4-106 30-132 (198)
364 CHL00076 chlB photochlorophyll 39.2 45 0.00099 34.2 4.7 35 79-123 364-398 (513)
365 COG0541 Ffh Signal recognition 39.1 52 0.0011 32.5 4.8 41 5-45 103-143 (451)
366 PRK06029 3-octaprenyl-4-hydrox 38.8 47 0.001 28.8 4.1 43 3-46 2-45 (185)
367 PRK08155 acetolactate synthase 38.7 64 0.0014 33.5 5.9 28 346-373 76-109 (564)
368 PRK09165 replicative DNA helic 38.6 65 0.0014 32.9 5.7 39 4-42 219-272 (497)
369 PRK01231 ppnK inorganic polyph 38.5 48 0.001 31.2 4.4 53 346-418 62-118 (295)
370 COG1611 Predicted Rossmann fol 38.4 1.4E+02 0.0031 26.3 7.1 28 342-370 108-139 (205)
371 cd07025 Peptidase_S66 LD-Carbo 38.3 85 0.0018 29.3 6.1 74 285-374 45-120 (282)
372 PRK10422 lipopolysaccharide co 38.0 38 0.00082 32.7 3.8 87 16-125 201-289 (352)
373 TIGR00514 accC acetyl-CoA carb 37.9 3.4E+02 0.0074 27.2 10.8 98 1-122 1-104 (449)
374 TIGR03457 sulphoacet_xsc sulfo 37.9 2E+02 0.0043 30.0 9.4 28 346-373 64-97 (579)
375 PLN02496 probable phosphopanto 37.8 38 0.00083 29.9 3.4 45 1-47 18-62 (209)
376 PRK08979 acetolactate synthase 37.8 3.7E+02 0.0081 28.0 11.3 101 293-417 430-533 (572)
377 TIGR00877 purD phosphoribosyla 37.8 1.1E+02 0.0024 30.3 7.2 90 3-122 1-93 (423)
378 PRK07856 short chain dehydroge 37.6 2.2E+02 0.0047 25.6 8.7 33 4-39 7-39 (252)
379 PRK08978 acetolactate synthase 37.6 1.5E+02 0.0033 30.7 8.4 27 347-373 64-96 (548)
380 smart00096 UTG Uteroglobin. 37.5 1.5E+02 0.0032 21.0 5.9 48 404-452 17-64 (69)
381 COG1255 Uncharacterized protei 37.5 2.1E+02 0.0045 22.7 6.9 20 18-37 24-43 (129)
382 PRK08527 acetolactate synthase 37.4 1.3E+02 0.0028 31.3 7.9 27 346-372 66-98 (563)
383 PF00982 Glyco_transf_20: Glyc 37.4 1.1E+02 0.0024 31.0 7.0 105 332-452 357-473 (474)
384 PRK06882 acetolactate synthase 37.4 1.4E+02 0.0031 31.0 8.2 28 346-373 67-100 (574)
385 TIGR00118 acolac_lg acetolacta 37.4 1.2E+02 0.0027 31.4 7.7 27 347-373 65-97 (558)
386 CHL00099 ilvB acetohydroxyacid 37.3 1.5E+02 0.0032 31.1 8.3 27 347-373 77-109 (585)
387 PF03446 NAD_binding_2: NAD bi 37.3 30 0.00065 29.2 2.7 31 2-37 1-31 (163)
388 PLN02948 phosphoribosylaminoim 37.3 5.1E+02 0.011 27.1 12.8 141 274-435 411-559 (577)
389 COG1927 Mtd Coenzyme F420-depe 37.1 2.9E+02 0.0064 24.3 12.8 112 275-434 32-146 (277)
390 TIGR00959 ffh signal recogniti 37.0 1.5E+02 0.0033 29.6 7.8 40 5-44 102-142 (428)
391 PHA02542 41 41 helicase; Provi 37.0 56 0.0012 33.1 4.9 39 4-42 192-230 (473)
392 PLN02470 acetolactate synthase 36.9 3E+02 0.0066 28.7 10.5 112 280-417 425-545 (585)
393 PRK06171 sorbitol-6-phosphate 36.6 3E+02 0.0065 24.9 9.5 34 3-39 9-42 (266)
394 PRK09107 acetolactate synthase 36.6 4.1E+02 0.0089 27.9 11.4 101 293-417 439-542 (595)
395 PRK10416 signal recognition pa 36.5 1.3E+02 0.0028 28.6 7.1 39 4-42 116-154 (318)
396 PRK02910 light-independent pro 36.4 55 0.0012 33.7 4.8 35 79-123 352-386 (519)
397 PRK00994 F420-dependent methyl 36.3 3.3E+02 0.0071 24.6 11.3 39 275-313 32-71 (277)
398 PRK08306 dipicolinate synthase 36.3 2.1E+02 0.0046 26.9 8.5 25 14-39 10-34 (296)
399 PRK07523 gluconate 5-dehydroge 36.3 1.2E+02 0.0026 27.3 6.8 33 4-39 11-43 (255)
400 PRK08063 enoyl-(acyl carrier p 36.3 1.4E+02 0.0031 26.7 7.2 34 1-37 2-35 (250)
401 PF02776 TPP_enzyme_N: Thiamin 36.3 39 0.00084 28.7 3.2 28 346-373 64-97 (172)
402 cd01840 SGNH_hydrolase_yrhL_li 36.3 1.2E+02 0.0026 24.9 6.1 38 272-310 50-87 (150)
403 PRK11559 garR tartronate semia 36.3 40 0.00087 31.6 3.6 33 1-38 1-33 (296)
404 PRK12481 2-deoxy-D-gluconate 3 36.1 77 0.0017 28.7 5.4 33 3-38 8-40 (251)
405 PRK06719 precorrin-2 dehydroge 36.1 54 0.0012 27.5 4.0 31 3-38 14-44 (157)
406 cd02065 B12-binding_like B12 b 36.0 68 0.0015 25.2 4.5 35 4-38 1-35 (125)
407 PRK06249 2-dehydropantoate 2-r 35.9 45 0.00098 31.6 3.9 34 2-40 5-38 (313)
408 PRK08978 acetolactate synthase 35.8 3.4E+02 0.0074 28.0 10.7 100 294-417 411-513 (548)
409 TIGR02113 coaC_strep phosphopa 35.8 36 0.00078 29.3 2.9 43 3-46 1-43 (177)
410 PF09001 DUF1890: Domain of un 35.7 28 0.0006 28.3 2.0 31 17-47 14-44 (139)
411 PF06032 DUF917: Protein of un 35.7 21 0.00044 34.6 1.5 101 8-121 16-120 (353)
412 PRK07889 enoyl-(acyl carrier p 35.7 80 0.0017 28.7 5.4 31 4-37 8-40 (256)
413 PRK14619 NAD(P)H-dependent gly 35.4 39 0.00084 32.0 3.4 33 2-39 4-36 (308)
414 TIGR02201 heptsyl_trn_III lipo 35.4 79 0.0017 30.3 5.6 84 16-125 199-287 (344)
415 PRK07524 hypothetical protein; 35.3 2.7E+02 0.0059 28.7 9.8 26 347-372 65-96 (535)
416 PRK05636 replicative DNA helic 35.1 46 0.001 34.0 4.0 38 4-41 267-305 (505)
417 PRK02122 glucosamine-6-phospha 35.1 1.6E+02 0.0035 31.3 8.0 20 76-102 509-528 (652)
418 TIGR01278 DPOR_BchB light-inde 35.1 56 0.0012 33.5 4.6 34 80-123 355-388 (511)
419 PF08323 Glyco_transf_5: Starc 35.0 30 0.00064 31.6 2.4 22 19-40 22-43 (245)
420 PRK06466 acetolactate synthase 35.0 1.5E+02 0.0033 30.8 8.0 27 347-373 68-100 (574)
421 TIGR01205 D_ala_D_alaTIGR D-al 35.0 1.9E+02 0.0042 27.1 8.1 24 16-39 17-40 (315)
422 cd01976 Nitrogenase_MoFe_alpha 34.9 50 0.0011 32.9 4.2 35 79-123 359-393 (421)
423 PRK07064 hypothetical protein; 34.8 2.2E+02 0.0048 29.4 9.1 26 347-372 67-98 (544)
424 PF02572 CobA_CobO_BtuR: ATP:c 34.7 1.6E+02 0.0035 25.2 6.6 95 4-105 5-105 (172)
425 COG1058 CinA Predicted nucleot 34.7 1.3E+02 0.0029 27.5 6.5 28 96-123 60-93 (255)
426 TIGR01990 bPGM beta-phosphoglu 34.6 99 0.0021 26.2 5.6 24 98-123 161-184 (185)
427 cd01981 Pchlide_reductase_B Pc 34.6 61 0.0013 32.4 4.8 35 79-123 360-394 (430)
428 COG0052 RpsB Ribosomal protein 34.5 88 0.0019 28.4 5.1 30 96-125 156-187 (252)
429 PRK06276 acetolactate synthase 34.5 4E+02 0.0086 27.9 11.0 117 274-417 409-531 (586)
430 PRK10117 trehalose-6-phosphate 34.4 1.5E+02 0.0033 30.0 7.4 105 334-454 338-454 (474)
431 COG2185 Sbm Methylmalonyl-CoA 34.3 61 0.0013 26.7 3.8 38 2-39 12-49 (143)
432 PRK07688 thiamine/molybdopteri 34.3 99 0.0021 29.8 5.9 33 2-39 24-57 (339)
433 TIGR00460 fmt methionyl-tRNA f 34.3 82 0.0018 29.9 5.4 32 3-39 1-32 (313)
434 PRK05867 short chain dehydroge 34.3 1.5E+02 0.0033 26.7 7.0 33 3-38 9-41 (253)
435 PF07905 PucR: Purine cataboli 34.0 1.3E+02 0.0028 24.0 5.7 45 261-309 34-79 (123)
436 cd01141 TroA_d Periplasmic bin 33.8 61 0.0013 27.8 4.1 28 96-123 69-98 (186)
437 PF00551 Formyl_trans_N: Formy 33.8 1E+02 0.0022 26.5 5.4 104 3-123 1-107 (181)
438 PRK14476 nitrogenase molybdenu 33.8 1.5E+02 0.0032 30.0 7.3 84 3-123 312-395 (455)
439 PRK07789 acetolactate synthase 33.7 1.7E+02 0.0038 30.7 8.2 28 346-373 94-127 (612)
440 PF02585 PIG-L: GlcNAc-PI de-N 33.6 2.3E+02 0.005 22.4 7.3 70 23-103 18-107 (128)
441 PF13450 NAD_binding_8: NAD(P) 33.6 51 0.0011 23.1 2.9 21 19-39 8-28 (68)
442 PRK00207 sulfur transfer compl 33.5 73 0.0016 25.7 4.2 40 1-40 1-42 (128)
443 PRK07979 acetolactate synthase 33.4 2.7E+02 0.0058 29.0 9.5 27 346-372 67-99 (574)
444 PRK00094 gpsA NAD(P)H-dependen 33.3 44 0.00096 31.7 3.5 32 3-39 2-33 (325)
445 PRK05858 hypothetical protein; 33.3 2.8E+02 0.006 28.7 9.5 26 348-373 69-100 (542)
446 PRK05708 2-dehydropantoate 2-r 33.2 40 0.00088 31.8 3.1 34 1-39 1-34 (305)
447 cd02013 TPP_Xsc_like Thiamine 33.2 3.2E+02 0.007 23.7 11.4 110 280-417 52-164 (196)
448 PF06418 CTP_synth_N: CTP synt 33.2 2.1E+02 0.0046 26.4 7.3 39 4-42 2-43 (276)
449 cd02037 MRP-like MRP (Multiple 32.9 1.9E+02 0.0041 24.2 7.0 31 9-39 7-37 (169)
450 PF03720 UDPG_MGDP_dh_C: UDP-g 32.9 52 0.0011 25.4 3.2 20 17-36 17-36 (106)
451 PF02780 Transketolase_C: Tran 32.9 82 0.0018 25.0 4.4 35 3-39 10-44 (124)
452 PRK12767 carbamoyl phosphate s 32.6 1.6E+02 0.0034 27.9 7.2 33 2-40 1-35 (326)
453 PLN00016 RNA-binding protein; 32.5 48 0.001 32.3 3.6 37 1-39 51-89 (378)
454 PRK12938 acetyacetyl-CoA reduc 32.5 1.9E+02 0.0042 25.7 7.5 34 1-37 1-34 (246)
455 PRK06522 2-dehydropantoate 2-r 32.4 53 0.0011 30.8 3.8 31 3-38 1-31 (304)
456 PRK06914 short chain dehydroge 32.3 71 0.0015 29.4 4.6 36 1-39 1-36 (280)
457 PF00148 Oxidored_nitro: Nitro 32.3 3.6E+02 0.0078 26.4 9.8 90 3-123 272-365 (398)
458 PF07015 VirC1: VirC1 protein; 32.3 3.8E+02 0.0083 24.2 9.8 37 6-42 6-42 (231)
459 PRK15408 autoinducer 2-binding 32.3 4.6E+02 0.0099 25.1 10.3 28 96-123 80-111 (336)
460 PRK08463 acetyl-CoA carboxylas 32.2 4.5E+02 0.0097 26.7 10.6 99 1-122 1-103 (478)
461 PRK00048 dihydrodipicolinate r 32.0 3.9E+02 0.0085 24.4 9.3 104 275-397 4-115 (257)
462 PRK13185 chlL protochlorophyll 31.9 80 0.0017 29.1 4.8 39 1-39 1-39 (270)
463 PRK13054 lipid kinase; Reviewe 31.9 2.5E+02 0.0054 26.4 8.2 83 273-376 4-94 (300)
464 TIGR00147 lipid kinase, YegS/R 31.8 2.1E+02 0.0046 26.6 7.7 68 288-374 18-91 (293)
465 PRK07418 acetolactate synthase 31.8 3.2E+02 0.007 28.8 9.8 125 282-416 13-164 (616)
466 PRK06048 acetolactate synthase 31.8 2.4E+02 0.0051 29.4 8.7 27 347-373 71-103 (561)
467 PF01372 Melittin: Melittin; 31.6 7.6 0.00016 20.9 -1.2 18 355-372 1-18 (26)
468 PRK06965 acetolactate synthase 31.5 5.2E+02 0.011 27.0 11.2 102 292-417 445-549 (587)
469 PRK06546 pyruvate dehydrogenas 31.3 5.3E+02 0.012 26.9 11.2 99 294-417 418-518 (578)
470 PRK08993 2-deoxy-D-gluconate 3 31.3 1.5E+02 0.0032 26.7 6.5 32 4-38 11-42 (253)
471 TIGR01917 gly_red_sel_B glycin 31.1 98 0.0021 30.5 5.2 43 74-123 61-113 (431)
472 PRK05808 3-hydroxybutyryl-CoA 31.0 2.7E+02 0.0058 25.8 8.2 34 1-39 1-35 (282)
473 TIGR01918 various_sel_PB selen 30.9 99 0.0022 30.5 5.2 45 349-395 347-393 (431)
474 PRK06180 short chain dehydroge 30.9 76 0.0016 29.2 4.5 35 2-39 3-37 (277)
475 TIGR00521 coaBC_dfp phosphopan 30.9 4.3E+02 0.0094 26.0 9.8 140 271-417 2-178 (390)
476 PRK07586 hypothetical protein; 30.8 1.8E+02 0.004 29.7 7.6 26 348-373 66-97 (514)
477 COG0665 DadA Glycine/D-amino a 30.8 58 0.0013 31.7 3.9 35 1-40 3-37 (387)
478 COG1763 MobB Molybdopterin-gua 30.7 98 0.0021 26.2 4.6 41 1-41 1-41 (161)
479 cd00984 DnaB_C DnaB helicase C 30.6 1.4E+02 0.003 26.8 6.1 37 5-41 16-53 (242)
480 cd01972 Nitrogenase_VnfE_like 30.5 1.5E+02 0.0032 29.6 6.7 37 79-123 363-399 (426)
481 PLN02293 adenine phosphoribosy 30.3 1.6E+02 0.0034 25.6 6.0 59 54-123 31-91 (187)
482 COG0003 ArsA Predicted ATPase 30.1 4.4E+02 0.0095 25.2 9.4 41 3-43 2-43 (322)
483 PRK11914 diacylglycerol kinase 30.0 1.6E+02 0.0035 27.7 6.6 68 288-374 25-96 (306)
484 PRK06182 short chain dehydroge 30.0 85 0.0018 28.8 4.7 35 1-38 1-35 (273)
485 cd07062 Peptidase_S66_mccF_lik 30.0 1.2E+02 0.0026 28.8 5.6 72 287-374 51-124 (308)
486 PRK08979 acetolactate synthase 30.0 2.2E+02 0.0047 29.7 8.1 28 346-373 67-100 (572)
487 cd03416 CbiX_SirB_N Sirohydroc 30.0 1.4E+02 0.003 22.6 5.1 27 275-301 2-28 (101)
488 PRK06398 aldose dehydrogenase; 29.9 3.9E+02 0.0085 24.1 9.1 33 4-39 7-39 (258)
489 PF03808 Glyco_tran_WecB: Glyc 29.8 2.1E+02 0.0045 24.4 6.7 93 21-129 39-137 (172)
490 TIGR02193 heptsyl_trn_I lipopo 29.8 1.3E+02 0.0027 28.5 5.9 96 4-125 181-281 (319)
491 PRK08327 acetolactate synthase 29.7 2.5E+02 0.0055 29.2 8.5 28 346-373 75-108 (569)
492 COG2159 Predicted metal-depend 29.6 3E+02 0.0064 25.9 8.2 93 261-362 116-210 (293)
493 PLN02735 carbamoyl-phosphate s 29.6 2E+02 0.0043 32.8 8.1 38 3-40 24-67 (1102)
494 PRK13059 putative lipid kinase 29.5 2E+02 0.0044 26.9 7.2 29 346-374 56-90 (295)
495 PF06564 YhjQ: YhjQ protein; 29.5 2.4E+02 0.0051 25.7 7.2 39 1-39 1-39 (243)
496 COG0504 PyrG CTP synthase (UTP 29.4 5.6E+02 0.012 26.0 10.0 39 4-42 2-43 (533)
497 PRK12268 methionyl-tRNA synthe 29.3 53 0.0011 34.1 3.4 40 1-40 1-51 (556)
498 TIGR00421 ubiX_pad polyprenyl 29.2 65 0.0014 27.8 3.4 42 4-46 1-42 (181)
499 PF05225 HTH_psq: helix-turn-h 28.9 90 0.0019 19.9 3.2 25 404-428 1-26 (45)
500 PRK10964 ADP-heptose:LPS hepto 28.9 92 0.002 29.5 4.8 82 18-125 198-280 (322)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-67 Score=516.68 Aligned_cols=434 Identities=28% Similarity=0.469 Sum_probs=331.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC----CCCC-------
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP----MPPS------- 70 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~------- 70 (456)
++||+++|+|++||++|++.||+.|+.+|++|||++++.+..++.+.....+++++..++.+..+ +...
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~ 88 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPS 88 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchh
Confidence 35999999999999999999999999999999999999877666543222346887776543211 1110
Q ss_pred -----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCC
Q 046077 71 -----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDI 145 (456)
Q Consensus 71 -----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 145 (456)
......+...+.+++++.. ++|+|||+|.+++|+..+|+++|||++.|++++++.++.+++.+...+...
T Consensus 89 ~~~~~~~a~~~~~~~~~~~l~~~~-----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~ 163 (477)
T PLN02863 89 GFPLMIHALGELYAPLLSWFRSHP-----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKI 163 (477)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhCC-----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccc
Confidence 1122234555666666531 278999999999999999999999999999999999999988754322111
Q ss_pred ---CCCCc---ccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHh
Q 046077 146 ---KPGET---RLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMAD 219 (456)
Q Consensus 146 ---~~~~~---~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 219 (456)
.+.+. ..+||++. ++.++++....... ........+.+.......++++++|||++||+.+++++++
T Consensus 164 ~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 164 NPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYV----EGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccccccccCCCCCCCC---cChHhCchhhhccC----ccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 11112 24678775 77777776543210 0000000111111223467789999999999999999988
Q ss_pred hcC-CCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHH
Q 046077 220 QIG-IPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGAL 298 (456)
Q Consensus 220 ~~~-~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al 298 (456)
.++ ++++.|||+++....+ . ....++. .....++++.+||+.+++++||||||||+...+.+++.+++.+|
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~--~----~~~~~~~--~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL 308 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEK--S----GLMERGG--PSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGL 308 (477)
T ss_pred hcCCCCeEEeCCCccccccc--c----cccccCC--cccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHH
Confidence 776 6899999997532100 0 0000000 01113467999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEcCCC-----CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccC
Q 046077 299 EESPGPFIWVVQPGS-----EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWP 373 (456)
Q Consensus 299 ~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P 373 (456)
+.++.+|||+++... ...+|+++.++..++|+++.+|+||.++|.|+++++|||||||||++|++++|||||++|
T Consensus 309 ~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 309 EKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred HhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 999999999998432 135788888888888999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Q 046077 374 IRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM-SDEEMKTRAAILQVKFEQGF--PASSVAALNAFSDF 450 (456)
Q Consensus 374 ~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~ 450 (456)
++.||+.||+++++.+|+|+++..++.+..+.+++.++|+++| ++++||+||+++++..+++. ||+|.+++++++++
T Consensus 389 ~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~ 468 (477)
T PLN02863 389 MAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKH 468 (477)
T ss_pred ccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 9999999999988788999999543224568999999999999 67899999999999998875 89999999999999
Q ss_pred HhhcC
Q 046077 451 ISRKV 455 (456)
Q Consensus 451 l~~~~ 455 (456)
+.+.+
T Consensus 469 i~~~~ 473 (477)
T PLN02863 469 VVELG 473 (477)
T ss_pred HHHhc
Confidence 97653
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.7e-65 Score=503.59 Aligned_cols=419 Identities=26% Similarity=0.421 Sum_probs=326.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC----CC-C----c
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM----PP-S----D 71 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~-~----~ 71 (456)
++||+++|+|++||++|++.||+.|+ .+|++|||++++.+..++.+.....+++++..+|+...++ .. . .
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~~~~~ 84 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVVTKIG 84 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHHHHHH
Confidence 46999999999999999999999998 7899999999997655443321112368999998633211 11 1 1
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh-hccCCC---CC
Q 046077 72 PLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK-LDATDI---KP 147 (456)
Q Consensus 72 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~-~~~~~~---~~ 147 (456)
.....+.+.+++++++.. .+|+|||+|++++|+..+|+++|||++.|++++++.++.+.+... ...... .+
T Consensus 85 ~~~~~~~~~~~~~l~~~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
T PLN02992 85 VIMREAVPTLRSKIAEMH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQ 159 (481)
T ss_pred HHHHHhHHHHHHHHHhcC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccC
Confidence 123344577788887641 178999999999999999999999999999999998877654321 111110 11
Q ss_pred CCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhh------c
Q 046077 148 GETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQ------I 221 (456)
Q Consensus 148 ~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~------~ 221 (456)
.+...+||++. ++..+++..+.... ......+.+....+.+++++++|||.+||+.+++++++. .
T Consensus 160 ~~~~~iPg~~~---l~~~dlp~~~~~~~------~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~ 230 (481)
T PLN02992 160 RKPLAMPGCEP---VRFEDTLDAYLVPD------EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVA 230 (481)
T ss_pred CCCcccCCCCc---cCHHHhhHhhcCCC------cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccccc
Confidence 23456888876 67777775332210 001111222234456788999999999999999998652 1
Q ss_pred CCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Q 046077 222 GIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES 301 (456)
Q Consensus 222 ~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~ 301 (456)
++++|.|||+++... . ...+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 231 ~~~v~~VGPl~~~~~------------------~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 231 RVPVYPIGPLCRPIQ------------------S-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred CCceEEecCccCCcC------------------C-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 367999999975320 0 113457999999999899999999999999999999999999999
Q ss_pred CCCEEEEEcCCC--------------------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHH
Q 046077 302 PGPFIWVVQPGS--------------------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTME 361 (456)
Q Consensus 302 ~~~~i~~~~~~~--------------------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e 361 (456)
+.+|||+++... .+.+|++|.++.+.+|+++.+|+||.+||.|+++++|||||||||++|
T Consensus 292 ~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 292 QQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred CCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 999999996321 124788999999899999999999999999999999999999999999
Q ss_pred HHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcC--
Q 046077 362 AIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD---EEMKTRAAILQVKFEQGF-- 436 (456)
Q Consensus 362 ~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~-- 436 (456)
++++|||||++|++.||+.||+++++.+|+|+.+... .+.+++++|+++|+++|++ .++|+++++++++++++.
T Consensus 372 al~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~ 450 (481)
T PLN02992 372 SVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSI 450 (481)
T ss_pred HHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999996578999999531 2368999999999999976 479999999999998764
Q ss_pred --CCChHHHHHHHHHHHhhc
Q 046077 437 --PASSVAALNAFSDFISRK 454 (456)
Q Consensus 437 --~~~~~~~~~~~~~~l~~~ 454 (456)
||||.++++++++++.+.
T Consensus 451 ~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 451 DGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred CCCCchHHHHHHHHHHHHHH
Confidence 799999999999988654
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.7e-65 Score=500.91 Aligned_cols=417 Identities=25% Similarity=0.383 Sum_probs=323.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC-CCC-------chHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM-PPS-------DPLS 74 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-------~~~~ 74 (456)
+||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... . ...++++|..+|++.++. ... ....
T Consensus 8 ~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~ 84 (451)
T PLN02410 8 RRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-DDFTDFQFVTIPESLPESDFKNLGPIEFLHKLN 84 (451)
T ss_pred CEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-cCCCCeEEEeCCCCCCcccccccCHHHHHHHHH
Confidence 3999999999999999999999999999999999998654211 1 112369999999866542 111 1122
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhc------cCCC-CC
Q 046077 75 QQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLD------ATDI-KP 147 (456)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~------~~~~-~~ 147 (456)
..+...++++++++.... .++++|||+|++++|+..+|+++|||++.|++++++.++.+.++.... +... .+
T Consensus 85 ~~~~~~~~~~L~~l~~~~-~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (451)
T PLN02410 85 KECQVSFKDCLGQLVLQQ-GNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKG 163 (451)
T ss_pred HHhHHHHHHHHHHHHhcc-CCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccccc
Confidence 244556777777653111 126799999999999999999999999999999999998777642111 1111 11
Q ss_pred CCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEee
Q 046077 148 GETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWG 227 (456)
Q Consensus 148 ~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~ 227 (456)
.....+||++. ++.++++....... ......+.. ...+.+++++++|||++||+.+++++++..++++++
T Consensus 164 ~~~~~iPg~~~---~~~~dlp~~~~~~~------~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 164 QQNELVPEFHP---LRCKDFPVSHWASL------ESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred CccccCCCCCC---CChHHCcchhcCCc------HHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 22346888876 66666664322100 000000010 112457889999999999999999998877789999
Q ss_pred ecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 046077 228 VGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIW 307 (456)
Q Consensus 228 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~ 307 (456)
|||+...... + ........+|.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|||
T Consensus 234 vGpl~~~~~~---~------------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlW 298 (451)
T PLN02410 234 IGPLHLVASA---P------------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLW 298 (451)
T ss_pred ecccccccCC---C------------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEE
Confidence 9999753200 0 000112346899999999999999999999999999999999999999999999
Q ss_pred EEcCCC------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhH
Q 046077 308 VVQPGS------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFN 381 (456)
Q Consensus 308 ~~~~~~------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~n 381 (456)
+++.+. .+.+|++|.++... |..+.+|+||.+||.|+++++|||||||||++|++++|||||++|+..||+.|
T Consensus 299 v~r~~~~~~~~~~~~lp~~f~er~~~-~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 377 (451)
T PLN02410 299 VIRPGSVRGSEWIESLPKEFSKIISG-RGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVN 377 (451)
T ss_pred EEccCcccccchhhcCChhHHHhccC-CeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHH
Confidence 998532 12378899888754 45667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhh
Q 046077 382 AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE---EMKTRAAILQVKFEQGF--PASSVAALNAFSDFISR 453 (456)
Q Consensus 382 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~l~~ 453 (456)
|+++++.+|+|+.+. +.+++++|+++|+++|+++ +||+++++++++++++. ||+|.++++++++++..
T Consensus 378 a~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 378 ARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999998889999994 4789999999999999765 69999999999999864 89999999999999864
No 4
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-65 Score=497.79 Aligned_cols=416 Identities=20% Similarity=0.323 Sum_probs=321.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCC--CCeEEEecC--CCCCCCCC--------
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQY--PRTRTTQIT--SSGRPMPP-------- 69 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~~-------- 69 (456)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+..... -.+.+.++| ++.+++..
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 569999999999999999999999999999999999998765554421011 126677776 33332211
Q ss_pred ----CchHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCC
Q 046077 70 ----SDPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDI 145 (456)
Q Consensus 70 ----~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 145 (456)
+......+.+.+++++++. +|||||+|+ ++|+..+|+++|||++.|++++++.++.+..+ . ..
T Consensus 85 ~~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~--~---~~ 151 (453)
T PLN02764 85 SADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVP--G---GE 151 (453)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc--c---cc
Confidence 1112224456777777765 789999996 88999999999999999999999988887631 1 00
Q ss_pred CCCCcccCCCCCCC-ccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCC
Q 046077 146 KPGETRLIPGLPEE-MALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIP 224 (456)
Q Consensus 146 ~~~~~~~~pgl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~ 224 (456)
....+||+|.. ..++.++++....... . ...........+....+.+++++++|||.+||+.+++++++..+++
T Consensus 152 ---~~~~~pglp~~~v~l~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~ 226 (453)
T PLN02764 152 ---LGVPPPGYPSSKVLLRKQDAYTMKNLEP-T-NTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKK 226 (453)
T ss_pred ---CCCCCCCCCCCcccCcHhhCcchhhcCC-C-ccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCc
Confidence 01234788731 1245555554221100 0 0000011111222234567889999999999999999997755678
Q ss_pred EeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Q 046077 225 AWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGP 304 (456)
Q Consensus 225 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~ 304 (456)
++.|||+++... . . ...+.+|.+|||.+++++||||||||+...+.+++.+++.+|+.++.+
T Consensus 227 v~~VGPL~~~~~----------~-------~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~p 288 (453)
T PLN02764 227 VLLTGPVFPEPD----------K-------T-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSP 288 (453)
T ss_pred EEEeccCccCcc----------c-------c-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 999999975310 0 0 012467999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCC-----CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchh
Q 046077 305 FIWVVQPGS-----EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQY 379 (456)
Q Consensus 305 ~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~ 379 (456)
|+|+++... .+.+|++|+++.+++|+++.+|+||.+||.|+++++|||||||||++|++++|||||++|+..||+
T Consensus 289 flwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 368 (453)
T PLN02764 289 FLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQV 368 (453)
T ss_pred eEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchH
Confidence 999998532 236899999998888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q 046077 380 FNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE-----EMKTRAAILQVKFEQGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 380 ~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (456)
.||+++++.+|+|+.+..++.+.+++++|+++|+++|+++ ++|++++++++++++. |+|.+.++++++++.+.
T Consensus 369 ~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~--GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 369 LNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP--GLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHh
Confidence 9999997678999988532113589999999999999763 3999999999999876 99999999999999765
Q ss_pred C
Q 046077 455 V 455 (456)
Q Consensus 455 ~ 455 (456)
+
T Consensus 447 ~ 447 (453)
T PLN02764 447 V 447 (453)
T ss_pred c
Confidence 4
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-65 Score=502.68 Aligned_cols=420 Identities=25% Similarity=0.388 Sum_probs=323.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCC--C---chHHH-HH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPP--S---DPLSQ-QA 77 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~---~~~~~-~~ 77 (456)
||+++|+|++||++|++.||+.|+.+|++||+++++.+..++.+.....++++|+.+|++.++... . ..... .+
T Consensus 8 HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~~a~~~~~ 87 (448)
T PLN02562 8 KIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIENSMENTM 87 (448)
T ss_pred EEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876655543222246999999987643211 1 11222 35
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhcc---CCCC--C---CC
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDA---TDIK--P---GE 149 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~---~~~~--~---~~ 149 (456)
...++++++++... ++++|||+|++++|+..+|+++|||++.|++++++.++.+.+...... .+.. + ..
T Consensus 88 ~~~l~~ll~~l~~~---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (448)
T PLN02562 88 PPQLERLLHKLDED---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQLEK 164 (448)
T ss_pred hHHHHHHHHHhcCC---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccccccc
Confidence 66778888776322 256899999999999999999999999999999998887765422111 1110 1 11
Q ss_pred cccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHh----hcCCCE
Q 046077 150 TRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMAD----QIGIPA 225 (456)
Q Consensus 150 ~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~----~~~~~v 225 (456)
...+||+|. ++..+++....... ........+.+......+++++++|||.+||+.+++.+.. ...+++
T Consensus 165 ~~~~Pg~~~---l~~~dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v 237 (448)
T PLN02562 165 ICVLPEQPL---LSTEDLPWLIGTPK----ARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQI 237 (448)
T ss_pred cccCCCCCC---CChhhCcchhcCCC----cchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCE
Confidence 235888876 67777776543210 0000011122223445668899999999999999887754 235789
Q ss_pred eeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCC
Q 046077 226 WGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEV-GPTREEYRELAGALEESPGP 304 (456)
Q Consensus 226 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~-~~~~~~~~~~~~al~~~~~~ 304 (456)
+.|||+...... . .+ . ......+.+|.+||+.++++++|||||||+. ....+++.+++.+|+.++.+
T Consensus 238 ~~iGpl~~~~~~---------~-~~-~-~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~ 305 (448)
T PLN02562 238 LQIGPLHNQEAT---------T-IT-K-PSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRP 305 (448)
T ss_pred EEecCccccccc---------c-cC-C-CccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCC
Confidence 999999764210 0 00 0 0001234578899999998999999999986 56789999999999999999
Q ss_pred EEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHH
Q 046077 305 FIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKL 384 (456)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~ 384 (456)
|||+++.+..+.+|+++.++.. +|+.+++|+||.+||.|+++++|||||||||++|++++|||+|++|+.+||+.||++
T Consensus 306 fiW~~~~~~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 384 (448)
T PLN02562 306 FIWVLNPVWREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAY 384 (448)
T ss_pred EEEEEcCCchhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 9999976544457888877653 567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 046077 385 VVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGF-PASSVAALNAFSDFI 451 (456)
Q Consensus 385 ~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~l 451 (456)
+++.+|+|+.+. .+++++|+++|+++|+|++||+||++++++++++. ||||.++++++++++
T Consensus 385 ~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 385 IVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred HHHHhCceeEeC-----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 987689998883 47999999999999999999999999999998765 689999999999986
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.8e-65 Score=498.38 Aligned_cols=427 Identities=23% Similarity=0.366 Sum_probs=325.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCC-CCc--------hH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMP-PSD--------PL 73 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--------~~ 73 (456)
.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|+.++++.++.. ... ..
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~ 83 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--PSSPISIATISDGYDQGGFSSAGSVPEYLQNF 83 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--CCCCEEEEEcCCCCCCcccccccCHHHHHHHH
Confidence 4999999999999999999999999999999999999765555332 123699999998765421 111 12
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccC
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLI 153 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (456)
...+.+.+++++++..... ++++|||+|++++|+..+|+++|||++.|++++++.+..+++..... ......+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~--~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~~~~~ 156 (449)
T PLN02173 84 KTFGSKTVADIIRKHQSTD--NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSLTLPI 156 (449)
T ss_pred HHhhhHHHHHHHHHhhccC--CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCccCCC
Confidence 2245667788887653211 13499999999999999999999999999999999887776542211 1123458
Q ss_pred CCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCc
Q 046077 154 PGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLP 233 (456)
Q Consensus 154 pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~ 233 (456)
||+|. ++.++++.+..... ........+.+....+.+++++++|||.+||+.++++++.. +++|.|||+.+
T Consensus 157 pg~p~---l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~ 227 (449)
T PLN02173 157 KDLPL---LELQDLPTFVTPTG----SHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVP 227 (449)
T ss_pred CCCCC---CChhhCChhhcCCC----CchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCc
Confidence 89886 67778876654210 00000011111224456788999999999999999998653 47999999975
Q ss_pred cccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 046077 234 EQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGS 313 (456)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (456)
...... ..........+ .-....+++|.+||+.++++++|||||||+...+.+++.+++.+| ++.+|+|++....
T Consensus 228 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~ 302 (449)
T PLN02173 228 SMYLDQ--QIKSDNDYDLN-LFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE 302 (449)
T ss_pred hhhccc--ccccccccccc-ccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc
Confidence 311000 00000000000 000012346999999999999999999999999999999999999 7889999998644
Q ss_pred CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEE
Q 046077 314 EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGL 393 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~ 393 (456)
.+.+|+++.++..++|+++.+|+||.+||.|+++++|||||||||++|++++|||||++|+++||+.||+++++.||+|+
T Consensus 303 ~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv 382 (449)
T PLN02173 303 ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGV 382 (449)
T ss_pred hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceE
Confidence 44578888777766789999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEecCCC-CcccHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHh
Q 046077 394 RVTDDLS-ETVKKGDIAEGIERLMSD---EEMKTRAAILQVKFEQGF--PASSVAALNAFSDFIS 452 (456)
Q Consensus 394 ~~~~~~~-~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~l~ 452 (456)
.+..++. ..+++++|+++|+++|++ .++|++|++++++.+++. ||+|.++++++++++.
T Consensus 383 ~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 383 RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9964321 246999999999999976 469999999999999764 8999999999999884
No 7
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.3e-65 Score=500.54 Aligned_cols=409 Identities=21% Similarity=0.320 Sum_probs=313.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCC----CCCCCCCC-------
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITS----SGRPMPPS------- 70 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~------- 70 (456)
++||+++|+|++||++|++.||+.|+++|++||+++++.+..++.+.....++++|..++. +.+++...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~ 83 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNS 83 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhh
Confidence 6699999999999999999999999999999999999987766655432233588866542 22222111
Q ss_pred -----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCC
Q 046077 71 -----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDI 145 (456)
Q Consensus 71 -----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 145 (456)
......+...++++++.. +|||||+|+ ++|+..+|+++|||++.|++++++.++.+.++... .
T Consensus 84 ~~~~~~~a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~----~ 151 (446)
T PLN00414 84 TKKPIFDAMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE----L 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh----c
Confidence 112223444555555443 789999996 88999999999999999999999999887763211 0
Q ss_pred CCCCcccCCCCCCC-ccCCccccc--cccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcC
Q 046077 146 KPGETRLIPGLPEE-MALTYSDIR--RKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIG 222 (456)
Q Consensus 146 ~~~~~~~~pgl~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~ 222 (456)
...+||+|.. ..++..+.+ .+... ....+.+....+.+++++++|||.+||+.+++++++.++
T Consensus 152 ----~~~~pg~p~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 217 (446)
T PLN00414 152 ----GFPPPDYPLSKVALRGHDANVCSLFAN----------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ 217 (446)
T ss_pred ----CCCCCCCCCCcCcCchhhcccchhhcc----------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC
Confidence 0235777641 111211111 11100 000111222445678899999999999999999988666
Q ss_pred CCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 046077 223 IPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESP 302 (456)
Q Consensus 223 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~ 302 (456)
+++|.|||+.+... .. .....+.+|.+|||.++++|||||||||+...+.+++.+++.+|+.++
T Consensus 218 ~~v~~VGPl~~~~~--------------~~--~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~ 281 (446)
T PLN00414 218 RKVLLTGPMLPEPQ--------------NK--SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTG 281 (446)
T ss_pred CCeEEEcccCCCcc--------------cc--cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcC
Confidence 78999999975320 00 001124579999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCC-----CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccc
Q 046077 303 GPFIWVVQPGS-----EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGD 377 (456)
Q Consensus 303 ~~~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~d 377 (456)
.+|+|++.... .+.+|++|.++.+++|.++.+|+||.+||.|+++++|||||||||++|++++|||||++|+..|
T Consensus 282 ~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~d 361 (446)
T PLN00414 282 LPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLAD 361 (446)
T ss_pred CCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccc
Confidence 99999998631 2358999999998899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 378 QYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE-----EMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 378 Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
|+.||+++++.+|+|+.+..++.+.+++++|+++++++|+++ ++|++++++++.+.+. |++...++++++.+.
T Consensus 362 Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~--gg~ss~l~~~v~~~~ 439 (446)
T PLN00414 362 QVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP--GLLSGYADKFVEALE 439 (446)
T ss_pred hHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 999999997678999999542123589999999999999753 3999999999998766 443345899999886
Q ss_pred hc
Q 046077 453 RK 454 (456)
Q Consensus 453 ~~ 454 (456)
+.
T Consensus 440 ~~ 441 (446)
T PLN00414 440 NE 441 (446)
T ss_pred Hh
Confidence 54
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-65 Score=500.80 Aligned_cols=410 Identities=19% Similarity=0.301 Sum_probs=318.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC----CCCCCCC-------
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS----GRPMPPS------- 70 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~------- 70 (456)
++||+++|+|++||++|++.||+.|+++||+|||++++.+..++.+.....+++++..++.+ .+++...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 34999999999999999999999999999999999999887776654322235667665442 2222111
Q ss_pred -----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCC
Q 046077 71 -----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDI 145 (456)
Q Consensus 71 -----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 145 (456)
....+.+.+.+++++++. ++||||+| ++.|+..+|+.+|||++.|++++++.++ +.+... ..
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~ 150 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GK 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cc
Confidence 111334555677777665 88999999 5789999999999999999999998664 332211 00
Q ss_pred CCCCcccCCCCCCC-ccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCC
Q 046077 146 KPGETRLIPGLPEE-MALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIP 224 (456)
Q Consensus 146 ~~~~~~~~pgl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~ 224 (456)
....+||+|.. ..++..+++.+... .........+..+...+++++++|||.+||+.+++++.+.++++
T Consensus 151 ---~~~~~pglp~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~ 220 (442)
T PLN02208 151 ---LGVPPPGYPSSKVLFRENDAHALATL-------SIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKK 220 (442)
T ss_pred ---cCCCCCCCCCcccccCHHHcCccccc-------chHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCC
Confidence 01236888752 23455566532100 00000001111134557889999999999999999998888889
Q ss_pred EeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Q 046077 225 AWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGP 304 (456)
Q Consensus 225 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~ 304 (456)
++.|||+.+... .....+.+|.+||+.+++++||||||||+.....+++.+++.+++.++.+
T Consensus 221 v~~vGpl~~~~~------------------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~p 282 (442)
T PLN02208 221 VLLTGPMFPEPD------------------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLP 282 (442)
T ss_pred EEEEeecccCcC------------------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCc
Confidence 999999985320 01124578999999999899999999999988899999999999999999
Q ss_pred EEEEEcCCC-----CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchh
Q 046077 305 FIWVVQPGS-----EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQY 379 (456)
Q Consensus 305 ~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~ 379 (456)
++|++..+. .+.+|++|.++.+++|+++.+|+||.+||.|+++++|||||||||++|++++|||||++|+.+||+
T Consensus 283 f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~ 362 (442)
T PLN02208 283 FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQV 362 (442)
T ss_pred EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhH
Confidence 999998641 135788999998889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q 046077 380 FNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE-----EMKTRAAILQVKFEQGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 380 ~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (456)
.||+++++.+|+|+.+..++.+.+++++|+++|+++|+++ ++|++++++++++.+. |+|.++++++++.+.++
T Consensus 363 ~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~--gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 363 LFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSP--GLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHh
Confidence 9999988668999999542123489999999999999764 3999999999998664 89999999999999765
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.4e-65 Score=499.62 Aligned_cols=427 Identities=22% Similarity=0.361 Sum_probs=323.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCC-CCCCeEEEecCCC----CCCCCC----C---
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFT-QYPRTRTTQITSS----GRPMPP----S--- 70 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~----~~~~~~----~--- 70 (456)
.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+... ..++++++.+|.+ .+++.. .
T Consensus 7 ~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~ 86 (472)
T PLN02670 7 LHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYT 86 (472)
T ss_pred cEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchh
Confidence 499999999999999999999999999999999999987655553211 1236999999832 332111 1
Q ss_pred -----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh---hcc
Q 046077 71 -----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK---LDA 142 (456)
Q Consensus 71 -----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~---~~~ 142 (456)
....+.+.+.+++++++. +++|||+|++++|+..+|+++|||++.|++++++.++.+.++.. ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 87 KQQLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 112233456667777665 78999999999999999999999999999999999888765421 111
Q ss_pred CCCCCCCcccCCCCCC---CccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHh
Q 046077 143 TDIKPGETRLIPGLPE---EMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMAD 219 (456)
Q Consensus 143 ~~~~~~~~~~~pgl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 219 (456)
..........+|++.+ .+.++..+++.+..... ........+.+....+.+++++++|||++||+.+++++++
T Consensus 160 ~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~----~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 160 LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTE----EDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred CCCccccccCCCCcCCCCccccccHHHhhHHHhccC----ccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 1111111112555422 12355567665543200 0000001111122235578899999999999999999988
Q ss_pred hcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHH
Q 046077 220 QIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALE 299 (456)
Q Consensus 220 ~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~ 299 (456)
..+++++.|||+.+.... ... . . ........+|.+||+.+++++||||||||+...+.+++.+++.+|+
T Consensus 236 ~~~~~v~~VGPl~~~~~~-------~~~--~-~-~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~ 304 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIED-------DEE--D-D-TIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLE 304 (472)
T ss_pred hhCCCeEEEecCCccccc-------ccc--c-c-ccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 667789999999753100 000 0 0 0000112579999999988999999999999999999999999999
Q ss_pred hCCCCEEEEEcCCC------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccC
Q 046077 300 ESPGPFIWVVQPGS------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWP 373 (456)
Q Consensus 300 ~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P 373 (456)
.++.+|||+++... .+.+|++|.++.+++++++.+|+||.+||.|+++++|||||||||++|++++|||||++|
T Consensus 305 ~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 305 KSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred HCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 99999999998521 135889999988888999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHhccEEEEecCC-CCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 374 IRGDQYFNAKLVVNYIKVGLRVTDDL-SETVKKGDIAEGIERLMSDE---EMKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 374 ~~~dQ~~na~~~~~~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
+..||+.||++++ .+|+|+.+...+ .+.+++++|+++|+++|.++ +||+||+++++.+++. +...+.++.+++
T Consensus 385 ~~~DQ~~Na~~v~-~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~ 461 (472)
T PLN02670 385 VLNEQGLNTRLLH-GKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM--DRNNRYVDELVH 461 (472)
T ss_pred chhccHHHHHHHH-HcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc--chhHHHHHHHHH
Confidence 9999999999998 579999995421 23589999999999999775 7999999999999998 788899999999
Q ss_pred HHhhc
Q 046077 450 FISRK 454 (456)
Q Consensus 450 ~l~~~ 454 (456)
+|.+.
T Consensus 462 ~l~~~ 466 (472)
T PLN02670 462 YLREN 466 (472)
T ss_pred HHHHh
Confidence 98754
No 10
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5e-65 Score=497.87 Aligned_cols=414 Identities=25% Similarity=0.413 Sum_probs=316.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EcCCCCcCCC----CCCCCCCCCeEEEecCCCCCC-CC-CC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRN--YHTTL--IIPSILVSAI----PPSFTQYPRTRTTQITSSGRP-MP-PS 70 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~G--h~Vt~--~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~-~~-~~ 70 (456)
-+.||+++|+|++||++|++.||++|+.+| +.||+ .+++.+...+ ++.....++++|+.+|++... .. ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 056999999999999999999999999998 55655 4444322211 111112246999999977531 11 11
Q ss_pred --------chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh-hc
Q 046077 71 --------DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK-LD 141 (456)
Q Consensus 71 --------~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~-~~ 141 (456)
......+...++++++++... ++++|||+|++++|+..+|+++|||++.|++++++.++.+.+... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN---FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC---CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 112234566778888765321 256999999999999999999999999999999999999877532 11
Q ss_pred cC--C-CCCCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHH
Q 046077 142 AT--D-IKPGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMA 218 (456)
Q Consensus 142 ~~--~-~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 218 (456)
.. . ..+.....+||+|. ++..+++....... ......+.+....+.+++++++|||++||+.++++++
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~------~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD------DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred cccccccccCCeecCCCCCC---CChHHCchhhcCCc------hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 11 1 11122356899986 77788877654210 0000111222234567789999999999999999997
Q ss_pred hhcC-CCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHH
Q 046077 219 DQIG-IPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGA 297 (456)
Q Consensus 219 ~~~~-~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~a 297 (456)
+.++ ++++.|||++..... . ......+.+|.+||+.+++++||||||||+...+.+++.+++.+
T Consensus 230 ~~~~~~~v~~vGPl~~~~~~---------~------~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~g 294 (451)
T PLN03004 230 EELCFRNIYPIGPLIVNGRI---------E------DRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVG 294 (451)
T ss_pred hcCCCCCEEEEeeeccCccc---------c------ccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 7543 689999999742100 0 00011235799999999999999999999998899999999999
Q ss_pred HHhCCCCEEEEEcCCC---------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCC
Q 046077 298 LEESPGPFIWVVQPGS---------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVP 368 (456)
Q Consensus 298 l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP 368 (456)
|+.++.+|||+++... .+.+|++|.++.+++|+++.+|+||.+||.|+++++|||||||||++|++++|||
T Consensus 295 L~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP 374 (451)
T PLN03004 295 LEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVP 374 (451)
T ss_pred HHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCC
Confidence 9999999999998531 1137889999998899999999999999999999999999999999999999999
Q ss_pred eeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--CCChH
Q 046077 369 FLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGF--PASSV 441 (456)
Q Consensus 369 ~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~--~~~~~ 441 (456)
||++|++.||+.||+++++.+|+|+.+..++.+.+++++|+++|+++|+|++||+++++++++.+.+. ||||.
T Consensus 375 ~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~ 449 (451)
T PLN03004 375 MVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSH 449 (451)
T ss_pred EEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999877899999964222367999999999999999999999999999998875 66664
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2e-64 Score=497.74 Aligned_cols=429 Identities=25% Similarity=0.399 Sum_probs=319.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCC--ch----H
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKN--FSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPS--DP----L 73 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~--L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~----~ 73 (456)
+.||+++|+|++||++|++.||++ |+++|++|||++++.+.+++++.....+.+++..++++.++.... .. .
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~~~~~~ 87 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPETLLKSL 87 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHHHHHHH
Confidence 459999999999999999999999 559999999999998876664432223468888777655443211 11 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhh-ccCCC-CC-CCc
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKL-DATDI-KP-GET 150 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~ 150 (456)
.+.+.+.+++++++. +|||||+|.++.|+..+|+++|||++.|++++++.++.+.+.... ..... .+ ...
T Consensus 88 ~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T PLN02210 88 NKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQT 160 (456)
T ss_pred HHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCe
Confidence 223344566666554 899999999999999999999999999999999999887764321 11111 11 123
Q ss_pred ccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecc
Q 046077 151 RLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGL 230 (456)
Q Consensus 151 ~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp 230 (456)
..+||++. ++.++++..+.... +........+..+....++++++|||.+||+++++++++. +++++|||
T Consensus 161 ~~~Pgl~~---~~~~dl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~~v~~VGP 230 (456)
T PLN02210 161 VELPALPL---LEVRDLPSFMLPSG-----GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL--KPVIPIGP 230 (456)
T ss_pred eeCCCCCC---CChhhCChhhhcCC-----chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc--CCEEEEcc
Confidence 45888875 66677765443210 0000001112223445678999999999999999998763 57999999
Q ss_pred cCccccccccccccccchhhhhhccC-CCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEE
Q 046077 231 LLPEQHWKSTSSLVRHCEITEQKRQS-SCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVV 309 (456)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (456)
+++...-.... .....+. ... +..+.+|.+||+.++++++|||||||+.....+++.+++.+|+.++.+|||++
T Consensus 231 l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~ 305 (456)
T PLN02210 231 LVSPFLLGDDE----EETLDGK-NLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVI 305 (456)
T ss_pred cCchhhcCccc----ccccccc-cccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 97521000000 0000000 000 12346799999999999999999999999889999999999999999999999
Q ss_pred cCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHh
Q 046077 310 QPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYI 389 (456)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~ 389 (456)
+.......++.+++....++..+++|+||.+||.|+++++|||||||||++|++++|||||++|+..||+.||+++++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~ 385 (456)
T PLN02210 306 RPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF 385 (456)
T ss_pred eCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh
Confidence 86432223445555543233456799999999999999999999999999999999999999999999999999999668
Q ss_pred ccEEEEecCC-CCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHh
Q 046077 390 KVGLRVTDDL-SETVKKGDIAEGIERLMSDE---EMKTRAAILQVKFEQGF--PASSVAALNAFSDFIS 452 (456)
Q Consensus 390 G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~l~ 452 (456)
|+|+.+.... .+.+++++|+++|+++|.++ ++|+||++|++..+++. ||||.++++++++++.
T Consensus 386 g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 386 GIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred CeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9999995321 24689999999999999775 49999999999999875 8999999999999874
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-64 Score=501.98 Aligned_cols=430 Identities=24% Similarity=0.375 Sum_probs=324.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEcCCCCcCCC-------CCCC-CCCCCeEEEecCCCCCCCC--
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRN--YHTTLIIPSILVSAI-------PPSF-TQYPRTRTTQITSSGRPMP-- 68 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~G--h~Vt~~~~~~~~~~~-------~~~~-~~~~~i~~~~~~~~~~~~~-- 68 (456)
||+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ .+.. ...++++|+.+|++..+..
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 80 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED 80 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc
Confidence 999999999999999999999999999998 899999988764322 1100 0123699999998764221
Q ss_pred -CCchHHHHHHHHHHHHHhhhcCC---CCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhc-c-
Q 046077 69 -PSDPLSQQAAKDLEANLASRSEN---PDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLD-A- 142 (456)
Q Consensus 69 -~~~~~~~~~~~~~~~ll~~~~~~---~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~-~- 142 (456)
........+...+++.++++... ...++++|||+|++++|+..+|+++|||++.|++++++.++.+.+..... .
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~ 160 (481)
T PLN02554 81 PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEK 160 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcccc
Confidence 11223445566666666655321 01123489999999999999999999999999999999999987763211 1
Q ss_pred -CC---CCC-CCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHH
Q 046077 143 -TD---IKP-GETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYM 217 (456)
Q Consensus 143 -~~---~~~-~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~ 217 (456)
.+ ..+ .+...+||++.. ++..+++..... ......+.+....+.+++++++|||.+||+.+.+.+
T Consensus 161 ~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~--------~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 161 KYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLS--------KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred ccCccccCCCCceeECCCCCCC--CCHHHCCCcccC--------HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 11 111 123458888421 566676654431 000111122224556788999999999999999988
Q ss_pred Hhh--cCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHH
Q 046077 218 ADQ--IGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELA 295 (456)
Q Consensus 218 ~~~--~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~ 295 (456)
.+. ..++++.|||++...... . ......+.++.+||+.+++++||||||||+...+.+++.+++
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~-------~-------~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la 296 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSG-------D-------DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIA 296 (481)
T ss_pred HhcccCCCCEEEeCCCccccccc-------c-------ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHH
Confidence 763 336899999995321100 0 000123468999999998889999999999888899999999
Q ss_pred HHHHhCCCCEEEEEcCCC--------------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHH
Q 046077 296 GALEESPGPFIWVVQPGS--------------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTME 361 (456)
Q Consensus 296 ~al~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e 361 (456)
.+|+.++.+|||+++... .+.+|+++.++... |+.+++|+||.+||.|+++++|||||||||++|
T Consensus 297 ~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~E 375 (481)
T PLN02554 297 IALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKD-IGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILE 375 (481)
T ss_pred HHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhcc-CceEEeeCCHHHHhCCcccCcccccCccchHHH
Confidence 999999999999997521 12357788776644 456679999999999999999999999999999
Q ss_pred HHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecC--------CCCcccHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 046077 362 AIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDD--------LSETVKKGDIAEGIERLMS-DEEMKTRAAILQVKF 432 (456)
Q Consensus 362 ~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~--------~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~ 432 (456)
++++|||||++|+.+||+.||+++.+.+|+|+.+... ....+++++|+++|+++|+ |++||+||+++++++
T Consensus 376 a~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~ 455 (481)
T PLN02554 376 SLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKC 455 (481)
T ss_pred HHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999996644478999998521 1246899999999999996 789999999999999
Q ss_pred HhcC--CCChHHHHHHHHHHHhhcC
Q 046077 433 EQGF--PASSVAALNAFSDFISRKV 455 (456)
Q Consensus 433 ~~~~--~~~~~~~~~~~~~~l~~~~ 455 (456)
+.+. ||++.++++++++++.+-+
T Consensus 456 ~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 456 HVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhhC
Confidence 9874 8999999999999997643
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-64 Score=491.99 Aligned_cols=427 Identities=22% Similarity=0.340 Sum_probs=321.0
Q ss_pred CCc-eEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEcCCCCc-CCC----CCCCCCCCCeEEEecCCCCC-CC--CC
Q 046077 1 MER-EIFVVTGYWQGHLQPCIELCKNFSSRN--YHTTLIIPSILV-SAI----PPSFTQYPRTRTTQITSSGR-PM--PP 69 (456)
Q Consensus 1 m~~-~il~~~~~~~GHl~P~l~LA~~L~~~G--h~Vt~~~~~~~~-~~~----~~~~~~~~~i~~~~~~~~~~-~~--~~ 69 (456)
|.+ ||+++|+|++||++|++.||+.|+.+| ..||+++++... ..+ .+.....++++|..+|+... +. ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 644 999999999999999999999999998 999999988754 212 11111223699999996432 11 11
Q ss_pred --Cc----hHHHHH----HHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh
Q 046077 70 --SD----PLSQQA----AKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK 139 (456)
Q Consensus 70 --~~----~~~~~~----~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 139 (456)
.. .....+ ...+.+++++.... .++++|||+|.+++|+..+|+++|||++.|++++++.++.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALD--GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccC--CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 11 112222 22344444433111 1245999999999999999999999999999999998888765532
Q ss_pred hc-cCC-C--C-CCCcccCCCC-CCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHH
Q 046077 140 LD-ATD-I--K-PGETRLIPGL-PEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLF 213 (456)
Q Consensus 140 ~~-~~~-~--~-~~~~~~~pgl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 213 (456)
.. ... . . +.....+||+ +. ++.++++.+.... . ....+.+....+.+++++++|||++||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~------~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~ 227 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE------D--GYDAYVKLAILFTKANGILVNSSFDIEPYS 227 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC------c--cHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 11 110 0 0 1134568998 45 7888887655320 0 011112222346678899999999999999
Q ss_pred HHHHHh-hcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHH
Q 046077 214 IKYMAD-QIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYR 292 (456)
Q Consensus 214 ~~~~~~-~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~ 292 (456)
+++++. ...++++.|||+....... .. ......+++|.+||+.++++++|||||||+...+.+++.
T Consensus 228 ~~~~~~~~~~p~v~~VGPl~~~~~~~-------~~------~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ 294 (468)
T PLN02207 228 VNHFLDEQNYPSVYAVGPIFDLKAQP-------HP------EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVK 294 (468)
T ss_pred HHHHHhccCCCcEEEecCCcccccCC-------CC------ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHH
Confidence 998865 3446899999998532100 00 000112367999999999899999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCC---CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCe
Q 046077 293 ELAGALEESPGPFIWVVQPGS---EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPF 369 (456)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~ 369 (456)
+++.+|+.++.+|||+++... .+.+|+++.++... |..+++|+||.+||.|+++++|||||||||++|++++||||
T Consensus 295 ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~-~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~ 373 (468)
T PLN02207 295 EIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSG-RGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPI 373 (468)
T ss_pred HHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCC-CeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCE
Confidence 999999999999999998532 34578888877654 45677999999999999999999999999999999999999
Q ss_pred eccCCccchhhHHHHHHHHhccEEEEecC----CCCcccHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhcC--CCChH
Q 046077 370 LAWPIRGDQYFNAKLVVNYIKVGLRVTDD----LSETVKKGDIAEGIERLMS--DEEMKTRAAILQVKFEQGF--PASSV 441 (456)
Q Consensus 370 v~~P~~~dQ~~na~~~~~~~G~g~~~~~~----~~~~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~--~~~~~ 441 (456)
|++|+++||+.||+++++.+|+|+.+..+ ..+.+++++|+++|+++|+ +++||+||++++++++++. ||||.
T Consensus 374 l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~ 453 (468)
T PLN02207 374 VTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSF 453 (468)
T ss_pred EecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999988778999988421 1134699999999999997 6799999999999999875 89999
Q ss_pred HHHHHHHHHHhhc
Q 046077 442 AALNAFSDFISRK 454 (456)
Q Consensus 442 ~~~~~~~~~l~~~ 454 (456)
++++++++++...
T Consensus 454 ~~l~~~v~~~~~~ 466 (468)
T PLN02207 454 AAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.5e-64 Score=495.45 Aligned_cols=431 Identities=26% Similarity=0.432 Sum_probs=325.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCC----CCCCeEEEecCC-----CCCCCCCC---
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFT----QYPRTRTTQITS-----SGRPMPPS--- 70 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~----~~~~i~~~~~~~-----~~~~~~~~--- 70 (456)
.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+... ....++|+.+|. +.+++...
T Consensus 9 ~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~ 88 (491)
T PLN02534 9 LHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDT 88 (491)
T ss_pred CEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccccc
Confidence 499999999999999999999999999999999999987655544221 111489999984 33322111
Q ss_pred -c--hH-------HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhh
Q 046077 71 -D--PL-------SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKL 140 (456)
Q Consensus 71 -~--~~-------~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 140 (456)
. .. ...+...+++++++. .++|+|||+|++++|+..+|+.+|||++.|++++++..+.++..+..
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~lL~~~-----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 89 LPSRDLLRKFYDAVDKLQQPLERFLEQA-----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHhc-----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 0 11 122445666666543 12689999999999999999999999999999999988876544322
Q ss_pred ccC-C-CCCCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHH
Q 046077 141 DAT-D-IKPGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMA 218 (456)
Q Consensus 141 ~~~-~-~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 218 (456)
... . ..+...+.+||+|....++..+++....... . ..............++++++|||.+||+.++++++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~-----~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 236 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP-----D--LDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYE 236 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChhhcCcc-----c--HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHH
Confidence 211 1 1223456689987544567777765432100 0 00001111112234668999999999999999998
Q ss_pred hhcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHH
Q 046077 219 DQIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGAL 298 (456)
Q Consensus 219 ~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al 298 (456)
+.+++++|.|||+++..... . +.+.++. .....+.+|.+||+.+++++||||+|||+....++++.+++.+|
T Consensus 237 ~~~~~~v~~VGPL~~~~~~~--~----~~~~~~~--~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl 308 (491)
T PLN02534 237 KAIKKKVWCVGPVSLCNKRN--L----DKFERGN--KASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGL 308 (491)
T ss_pred hhcCCcEEEECccccccccc--c----cccccCC--ccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 87778999999997532100 0 0000000 00112357999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEcCCCC------CcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeecc
Q 046077 299 EESPGPFIWVVQPGSE------EYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW 372 (456)
Q Consensus 299 ~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~ 372 (456)
+.++.+|||+++.... ..+|++|.+...++|+++.+|+||.++|.|+++++|||||||||++|++++|||||++
T Consensus 309 ~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~ 388 (491)
T PLN02534 309 EASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITW 388 (491)
T ss_pred HhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEec
Confidence 9999999999984321 1357888877777899999999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHHHhccEEEEecC-------CC--C-cccHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhcC-
Q 046077 373 PIRGDQYFNAKLVVNYIKVGLRVTDD-------LS--E-TVKKGDIAEGIERLMS-----DEEMKTRAAILQVKFEQGF- 436 (456)
Q Consensus 373 P~~~dQ~~na~~~~~~~G~g~~~~~~-------~~--~-~~~~~~l~~~i~~~l~-----~~~~~~~a~~l~~~~~~~~- 436 (456)
|++.||+.||+++++.||+|+++... +. + .+++++|+++|+++|. +.++|+||++|+++++++.
T Consensus 389 P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~ 468 (491)
T PLN02534 389 PLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAME 468 (491)
T ss_pred cccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988421 01 1 3799999999999995 2479999999999999875
Q ss_pred -CCChHHHHHHHHHHHhh
Q 046077 437 -PASSVAALNAFSDFISR 453 (456)
Q Consensus 437 -~~~~~~~~~~~~~~l~~ 453 (456)
||||.++++++++++.+
T Consensus 469 ~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 469 LGGSSHINLSILIQDVLK 486 (491)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 89999999999999864
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.8e-64 Score=490.37 Aligned_cols=418 Identities=24% Similarity=0.349 Sum_probs=324.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEcCCCCcCCCC--CCCC---CCCCeEEEecCCCCCCCC-----C
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSR-NYHTTLIIPSILVSAIP--PSFT---QYPRTRTTQITSSGRPMP-----P 69 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~~~~~~~~~--~~~~---~~~~i~~~~~~~~~~~~~-----~ 69 (456)
=++||+++|+|++||++|++.||+.|+.+ |..||+++++.....+. +... ..+++++..+|++..++. .
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 04599999999999999999999999977 99999998776443321 1110 112599999997543221 1
Q ss_pred C----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCC-eEEEechhHHHHHHHHHHhh-hccC
Q 046077 70 S----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIP-VVSLFTFGACAAAMEWAAWK-LDAT 143 (456)
Q Consensus 70 ~----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~-~~~~ 143 (456)
. ......+...+++++++.. ++|+|||+|.+++|+..+|+++||| .+.|++++++.++.+++... ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 1 2233345677888887653 1689999999999999999999999 58888888888777665421 1111
Q ss_pred CC---CCCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhh
Q 046077 144 DI---KPGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQ 220 (456)
Q Consensus 144 ~~---~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 220 (456)
.. ...+...+||+|. ++..+++....... ......+......+.+++++++|||++||+.+++++++.
T Consensus 157 ~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~------~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS------DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred ccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC------cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 11 1123456899986 77788876443210 000001112223467889999999999999999999775
Q ss_pred c------CCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHH
Q 046077 221 I------GIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYREL 294 (456)
Q Consensus 221 ~------~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~ 294 (456)
+ ++++|.|||+++... . ...+.+|.+||+.+++++||||+|||+...+.+++.++
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~------------------~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~el 288 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNV------------------H-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVEL 288 (470)
T ss_pred cccccccCCceEEecCCCCCcc------------------c-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHH
Confidence 2 367999999984210 0 01235799999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEcCC-------------CCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHH
Q 046077 295 AGALEESPGPFIWVVQPG-------------SEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTME 361 (456)
Q Consensus 295 ~~al~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e 361 (456)
+.+|+.++.+|||+++.. ..+.+|+++.++.+.+++++.+|+||.+||.|+++++|||||||||++|
T Consensus 289 a~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~E 368 (470)
T PLN03015 289 AWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLE 368 (470)
T ss_pred HHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHH
Confidence 999999999999999732 1124788999888888999999999999999999999999999999999
Q ss_pred HHHhCCCeeccCCccchhhHHHHHHHHhccEEEEec-CCCCcccHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhc
Q 046077 362 AIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTD-DLSETVKKGDIAEGIERLMS-----DEEMKTRAAILQVKFEQG 435 (456)
Q Consensus 362 ~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~-~~~~~~~~~~l~~~i~~~l~-----~~~~~~~a~~l~~~~~~~ 435 (456)
++++|||||++|++.||+.||+++++.+|+|+.+.. +..+.+++++|+++|+++|. ..++|+||++++++.+++
T Consensus 369 ai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~A 448 (470)
T PLN03015 369 SLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERA 448 (470)
T ss_pred HHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999778999999941 11246899999999999994 247999999999999987
Q ss_pred C--CCChHHHHHHHHHHH
Q 046077 436 F--PASSVAALNAFSDFI 451 (456)
Q Consensus 436 ~--~~~~~~~~~~~~~~l 451 (456)
. ||||.++++++++++
T Consensus 449 v~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 449 WSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred hcCCCcHHHHHHHHHHhc
Confidence 5 899999999999876
No 16
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.1e-64 Score=492.67 Aligned_cols=430 Identities=23% Similarity=0.352 Sum_probs=324.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC---------CCCCCeEEEecCCCCCCCCC---
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF---------TQYPRTRTTQITSSGRPMPP--- 69 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~--- 69 (456)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.+.. .....++|..+|++.+++..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 359999999999999999999999999999999999997665544210 01224777777765543211
Q ss_pred -Cc----hHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhc-cC
Q 046077 70 -SD----PLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLD-AT 143 (456)
Q Consensus 70 -~~----~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~-~~ 143 (456)
.. .....+...++++++++... .++++|||+|++++|+..+|+++|||++.|++++++.++.+.+..... ..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~ 164 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQ--GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPF 164 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhcc--CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCc
Confidence 11 11123456677777765321 124599999999999999999999999999999999999887763221 11
Q ss_pred C-CC-CCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhc
Q 046077 144 D-IK-PGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQI 221 (456)
Q Consensus 144 ~-~~-~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~ 221 (456)
. .. +.....+||+|. ++.++++.+..... + .......+.+......+++++++|||.+||+.+++++++..
T Consensus 165 ~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 237 (480)
T PLN02555 165 PTETEPEIDVQLPCMPL---LKYDEIPSFLHPSS---P-YPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC 237 (480)
T ss_pred ccccCCCceeecCCCCC---cCHhhCcccccCCC---C-chHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC
Confidence 1 11 123356899986 77788876553200 0 00000001112234567889999999999999999987643
Q ss_pred CCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Q 046077 222 GIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES 301 (456)
Q Consensus 222 ~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~ 301 (456)
+++.|||+....... ... .. ...+..+++|.+||+.+++++||||+|||+...+.+++.+++.+|+.+
T Consensus 238 --~v~~iGPl~~~~~~~-------~~~-~~--~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~ 305 (480)
T PLN02555 238 --PIKPVGPLFKMAKTP-------NSD-VK--GDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNS 305 (480)
T ss_pred --CEEEeCcccCccccc-------ccc-cc--ccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhc
Confidence 499999997532100 000 00 000123467999999999899999999999999999999999999999
Q ss_pred CCCEEEEEcCCC------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCc
Q 046077 302 PGPFIWVVQPGS------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR 375 (456)
Q Consensus 302 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~ 375 (456)
+.+|||+++... .+.+|+++.+... .|..+++|+||.+||.|+++++|||||||||++|++++|||||++|++
T Consensus 306 ~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~ 384 (480)
T PLN02555 306 GVSFLWVMRPPHKDSGVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW 384 (480)
T ss_pred CCeEEEEEecCcccccchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc
Confidence 999999987421 1246777766553 456778999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhccEEEEecC--CCCcccHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcC--CCChHHHHHHHH
Q 046077 376 GDQYFNAKLVVNYIKVGLRVTDD--LSETVKKGDIAEGIERLMSD---EEMKTRAAILQVKFEQGF--PASSVAALNAFS 448 (456)
Q Consensus 376 ~dQ~~na~~~~~~~G~g~~~~~~--~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~ 448 (456)
.||+.||+++++.||+|+.+... ....+++++|.++|+++|++ .++|+||++|+++.+++. ||+|.++++++|
T Consensus 385 ~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v 464 (480)
T PLN02555 385 GDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFV 464 (480)
T ss_pred cccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999889999999421 12368999999999999965 469999999999998875 899999999999
Q ss_pred HHHhh
Q 046077 449 DFISR 453 (456)
Q Consensus 449 ~~l~~ 453 (456)
+++.+
T Consensus 465 ~~i~~ 469 (480)
T PLN02555 465 DKLVR 469 (480)
T ss_pred HHHHh
Confidence 99864
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-63 Score=494.29 Aligned_cols=424 Identities=23% Similarity=0.371 Sum_probs=326.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEcCCCCcC----CCCCCC----CCCCCeEEEecCCCCCCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRN----YHTTLIIPSILVS----AIPPSF----TQYPRTRTTQITSSGRPMP 68 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~G----h~Vt~~~~~~~~~----~~~~~~----~~~~~i~~~~~~~~~~~~~ 68 (456)
=+.||+++|+|++||++|++.||+.|+.+| +.|||++++.... ++.+.. ...++++|+.+|++..+..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 056999999999999999999999999986 7999999876432 222210 1112599999998753321
Q ss_pred -CC-----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh-hc
Q 046077 69 -PS-----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK-LD 141 (456)
Q Consensus 69 -~~-----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~-~~ 141 (456)
.. ......+.+.++++++++. ++++|||+|++++|+..+|+++|||++.|++++++.++.+.+... ..
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 156 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDE 156 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcc
Confidence 11 1123345566777776651 157999999999999999999999999999999999998876532 11
Q ss_pred cC--CCCC-CCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHH
Q 046077 142 AT--DIKP-GETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMA 218 (456)
Q Consensus 142 ~~--~~~~-~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 218 (456)
.. +... .....+||++. ++.++++....... . .....+....+.+.+++++++|||++||+.++++++
T Consensus 157 ~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~-----~-~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 157 EVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK-----S-PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred cccCcccccCcceecCCCCC---CChHHCCchhcCCC-----c-HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 11 0111 12345889876 77788876543210 0 000011111234567889999999999999999997
Q ss_pred hhc---C---CCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHH
Q 046077 219 DQI---G---IPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYR 292 (456)
Q Consensus 219 ~~~---~---~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~ 292 (456)
+.. + ++++.|||+.+... . ......+++|.+||+.+++++||||||||+.....+++.
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~----------~------~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ 291 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAF----------T------PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVR 291 (480)
T ss_pred hccccccCCCCceEEeCCCccccc----------c------CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHH
Confidence 642 1 57999999974210 0 001123568999999999999999999999888899999
Q ss_pred HHHHHHHhCCCCEEEEEcCCC------------CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHH
Q 046077 293 ELAGALEESPGPFIWVVQPGS------------EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTM 360 (456)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~ 360 (456)
+++.+|+.++.+|||+++... .+.+|+++.++.+.+++++.+|+||.+||.|+++++|||||||||++
T Consensus 292 ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~ 371 (480)
T PLN00164 292 EIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVL 371 (480)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHH
Confidence 999999999999999998531 12378888888888899999999999999999999999999999999
Q ss_pred HHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCC--CCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHH
Q 046077 361 EAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL--SETVKKGDIAEGIERLMSDE-----EMKTRAAILQVKFE 433 (456)
Q Consensus 361 e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~--~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~ 433 (456)
|++++|||||++|+.+||+.||+++++.+|+|+.+..+. .+.+++++|+++|+++|.++ .+|++|++++++++
T Consensus 372 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 372 ESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACR 451 (480)
T ss_pred HHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876789999985321 13479999999999999752 48999999999998
Q ss_pred hcC--CCChHHHHHHHHHHHhhc
Q 046077 434 QGF--PASSVAALNAFSDFISRK 454 (456)
Q Consensus 434 ~~~--~~~~~~~~~~~~~~l~~~ 454 (456)
++. ||||.++++++++++.+.
T Consensus 452 ~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 452 KAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHhcCCCcHHHHHHHHHHHHHhc
Confidence 875 899999999999999754
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.7e-63 Score=496.82 Aligned_cols=430 Identities=25% Similarity=0.473 Sum_probs=319.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCC----CC----CeEEEecC---CCCCCCCCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQ----YP----RTRTTQIT---SSGRPMPPS 70 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~----~~----~i~~~~~~---~~~~~~~~~ 70 (456)
+.||+++|+|++||++|++.||++|+.||++|||++++.+..++++.++. .+ .+.+..+| .+.+++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 46999999999999999999999999999999999999887666543211 11 23344444 222221100
Q ss_pred ------------chHH-------HHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHH
Q 046077 71 ------------DPLS-------QQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAA 131 (456)
Q Consensus 71 ------------~~~~-------~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~ 131 (456)
.... ..+...+++++++. +|||||+|.+++|+..+|+++|||++.|++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 0111 12333344444332 899999999999999999999999999999999888
Q ss_pred HHHHHHhhhccC-CCCC-CCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccc
Q 046077 132 AMEWAAWKLDAT-DIKP-GETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDL 209 (456)
Q Consensus 132 ~~~~~~~~~~~~-~~~~-~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 209 (456)
+.+.......+. ...+ .....+||+|..+.++..+++.... ................+++++++|||.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 158 CASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADE--------ESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCC--------chhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 876654332211 1111 1234478887533444444442100 00000111122234567789999999999
Q ss_pred cHHHHHHHHhhcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHH
Q 046077 210 DGLFIKYMADQIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTRE 289 (456)
Q Consensus 210 e~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~ 289 (456)
|+.+.+++++..+.++++|||+...... ......+. ...+..+.+|.+||+.++++++|||||||+.....+
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~------~~~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~ 301 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRG------FEEKAERG--KKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNE 301 (482)
T ss_pred HHHHHHHHHhccCCCEEEEccccccccc------cccccccC--CccccchhHHHHHHhcCCCCceEEEeecCCcCCCHH
Confidence 9999999988777789999998643210 00000000 011113467999999999999999999999988899
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCC-----CcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHH
Q 046077 290 EYRELAGALEESPGPFIWVVQPGSE-----EYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV 364 (456)
Q Consensus 290 ~~~~~~~al~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~ 364 (456)
++.+++.+|+.++.+|||+++.... +.+|+++.++..++|+++.+|+||.+||.|+++++|||||||||++|+++
T Consensus 302 ~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 302 QLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 9999999999999999999986421 24788998888888999999999999999999999999999999999999
Q ss_pred hCCCeeccCCccchhhHHHHHHHHhccEEEEecC-----CCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcC
Q 046077 365 HGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDD-----LSETVKKGDIAEGIERLMSDE---EMKTRAAILQVKFEQGF 436 (456)
Q Consensus 365 ~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~-----~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~ 436 (456)
+|||||++|+.+||+.||+++++.+++|+.+... +...+++++|+++|+++|.++ +||++|+++++.++++.
T Consensus 382 ~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~ 461 (482)
T PLN03007 382 AGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAV 461 (482)
T ss_pred cCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777777776321 124689999999999999887 89999999999999875
Q ss_pred --CCChHHHHHHHHHHHhhc
Q 046077 437 --PASSVAALNAFSDFISRK 454 (456)
Q Consensus 437 --~~~~~~~~~~~~~~l~~~ 454 (456)
||+|.++++++++.+.++
T Consensus 462 ~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 462 EEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred hCCCcHHHHHHHHHHHHHhc
Confidence 899999999999998754
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.9e-63 Score=487.34 Aligned_cols=423 Identities=24% Similarity=0.367 Sum_probs=317.8
Q ss_pred CCc-eEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEcCCCC-cCCCCCCCCCCCCeEEEecCCCCCCCC-C-C-----
Q 046077 1 MER-EIFVVTGYWQGHLQPCIELCKNFSS-RNYHTTLIIPSIL-VSAIPPSFTQYPRTRTTQITSSGRPMP-P-S----- 70 (456)
Q Consensus 1 m~~-~il~~~~~~~GHl~P~l~LA~~L~~-~Gh~Vt~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~----- 70 (456)
|.+ ||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.+.....++++|+.++++.+++. . .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~ 80 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQN 80 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHH
Confidence 644 9999999999999999999999996 7999999999853 222211111123699999987655431 1 1
Q ss_pred --chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCC
Q 046077 71 --DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPG 148 (456)
Q Consensus 71 --~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (456)
......+.+.+++++++.... .++++|||+|.+++|+..+|+++|||++.|++++++.++.+++.+.. ..
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~--~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~------~~ 152 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNG--DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG------NN 152 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhcc--CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc------CC
Confidence 112223456777787765321 12569999999999999999999999999999999999998765421 11
Q ss_pred CcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCccccc--CCeEEEEcCCccccHHHHHHHHhhcCCCEe
Q 046077 149 ETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIE--GSIALMFNTCDDLDGLFIKYMADQIGIPAW 226 (456)
Q Consensus 149 ~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~~~~~~~~v~ 226 (456)
....+||+|. ++.++++.+..... .+......+.+....+. .++++++|||++||+.++++++. .++|
T Consensus 153 ~~~~iPglp~---l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~ 222 (455)
T PLN02152 153 SVFEFPNLPS---LEIRDLPSFLSPSN----TNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMV 222 (455)
T ss_pred CeeecCCCCC---CchHHCchhhcCCC----CchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEE
Confidence 2356899876 77788877654210 00000001111122222 24689999999999999999865 3699
Q ss_pred eecccCccccccccccccccchhhhhhccC-CCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCE
Q 046077 227 GVGLLLPEQHWKSTSSLVRHCEITEQKRQS-SCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPF 305 (456)
Q Consensus 227 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~ 305 (456)
.|||+.+.... ......+ ... +..+.++.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|
T Consensus 223 ~VGPL~~~~~~--------~~~~~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 293 (455)
T PLN02152 223 AVGPLLPAEIF--------TGSESGK-DLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPF 293 (455)
T ss_pred EEcccCccccc--------cccccCc-cccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCe
Confidence 99999753200 0000000 000 1123579999999998999999999999999999999999999999999
Q ss_pred EEEEcCCCC-------C-----cCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccC
Q 046077 306 IWVVQPGSE-------E-----YMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWP 373 (456)
Q Consensus 306 i~~~~~~~~-------~-----~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P 373 (456)
||+++.... . .+|+++.++.++ |..+.+|+||.+||.|+++++|||||||||+.|++++|||+|++|
T Consensus 294 lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 294 LWVITDKLNREAKIEGEEETEIEKIAGFRHELEE-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred EEEEecCcccccccccccccccccchhHHHhccC-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc
Confidence 999985311 0 135677666543 456779999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Q 046077 374 IRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE--EMKTRAAILQVKFEQGF--PASSVAALNAFSD 449 (456)
Q Consensus 374 ~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~ 449 (456)
++.||+.||+++++.||+|+.+..++.+.+++++|+++|+++|+|+ +||+||++++++.+++. ||+|.++++++++
T Consensus 373 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~ 452 (455)
T PLN02152 373 MWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVK 452 (455)
T ss_pred ccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999877888888543334579999999999999765 49999999999998875 8999999999999
Q ss_pred HH
Q 046077 450 FI 451 (456)
Q Consensus 450 ~l 451 (456)
++
T Consensus 453 ~i 454 (455)
T PLN02152 453 TL 454 (455)
T ss_pred Hh
Confidence 86
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-62 Score=487.03 Aligned_cols=428 Identities=23% Similarity=0.354 Sum_probs=316.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCC---EEEEEcCCCCcC-----CCCCCCCCCCCeEEEecCCCCCCC-CC---
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNY---HTTLIIPSILVS-----AIPPSFTQYPRTRTTQITSSGRPM-PP--- 69 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh---~Vt~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~-~~--- 69 (456)
+.||+++|+|++||++|++.|||.|+.+|. .||+.++..... .+.+.....++|+|+.+|++..+. ..
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~ 82 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFV 82 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccc
Confidence 459999999999999999999999999984 567766543211 111111112469999999765221 10
Q ss_pred -C-----chHHHHHHHHHHHHHhhhcCC---CCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhh-
Q 046077 70 -S-----DPLSQQAAKDLEANLASRSEN---PDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWK- 139 (456)
Q Consensus 70 -~-----~~~~~~~~~~~~~ll~~~~~~---~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~- 139 (456)
. ......+...++++++++... ...++++|||+|.+++|+..+|+++|||++.|++++++.++.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~ 162 (475)
T PLN02167 83 KASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPER 162 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHh
Confidence 1 123344556677777665311 111145999999999999999999999999999999999888765421
Q ss_pred hccCC--C---CCCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHH
Q 046077 140 LDATD--I---KPGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFI 214 (456)
Q Consensus 140 ~~~~~--~---~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 214 (456)
..... . ...+...+||++.. ++..+++....... ....+....+.+.+++++++|||++||+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~--------~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 163 HRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKE--------SYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred ccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcc--------hHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 11111 0 11133558898422 55666654332100 0001112223456788999999999999999
Q ss_pred HHHHhhcC--CCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHH
Q 046077 215 KYMADQIG--IPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYR 292 (456)
Q Consensus 215 ~~~~~~~~--~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~ 292 (456)
+++++..+ +++++|||+.+.... .. . ......+.+|.+||+.+++++||||||||+...+.+++.
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~-------~~-----~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 299 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDR-------TS-----P-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIK 299 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccc-------cC-----C-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 99866422 579999999763210 00 0 000112367999999999999999999999888899999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCC------CcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhC
Q 046077 293 ELAGALEESPGPFIWVVQPGSE------EYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHG 366 (456)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~G 366 (456)
+++.+|+.++.+|||+++.... ..+|+++.++.+.++ ++++|+||.+||.|+++++|||||||||++|++++|
T Consensus 300 ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~G 378 (475)
T PLN02167 300 EIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFG 378 (475)
T ss_pred HHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcC
Confidence 9999999999999999985321 247888887776655 566999999999999999999999999999999999
Q ss_pred CCeeccCCccchhhHHHHHHHHhccEEEEecCC----CCcccHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhcC--CCC
Q 046077 367 VPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL----SETVKKGDIAEGIERLMSDE-EMKTRAAILQVKFEQGF--PAS 439 (456)
Q Consensus 367 vP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~----~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~--~~~ 439 (456)
||||++|+..||+.||+++.+.+|+|+.+.... ...+++++|+++|+++|+++ +||++|++++++++++. ||+
T Consensus 379 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 379 VPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred CCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999987555789999985320 13579999999999999754 89999999999999875 899
Q ss_pred hHHHHHHHHHHHhh
Q 046077 440 SVAALNAFSDFISR 453 (456)
Q Consensus 440 ~~~~~~~~~~~l~~ 453 (456)
|.++++++++++.+
T Consensus 459 S~~~l~~~v~~i~~ 472 (475)
T PLN02167 459 SFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5e-62 Score=483.95 Aligned_cols=421 Identities=28% Similarity=0.397 Sum_probs=320.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCC----C----c
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPP----S----D 71 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~----~ 71 (456)
+.||+++|+|++||++|++.||++|+.+ ||+|||++++.+..++++... .++++|+.++++.++... . .
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp~~~p~~~~~~~~~~~~~~ 88 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIPNVIPSELVRAADFPGFLE 88 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECCCCCCCccccccCHHHHHH
Confidence 3599999999999999999999999999 999999999988777666422 247999999975332111 1 1
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhcc---CCCCC-
Q 046077 72 PLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDA---TDIKP- 147 (456)
Q Consensus 72 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~---~~~~~- 147 (456)
...+.+...++++++++. .++||||+|.++.|+..+|+++|||++.+++++++.++.+.+...... .+...
T Consensus 89 ~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (459)
T PLN02448 89 AVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELS 163 (459)
T ss_pred HHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccc
Confidence 122345566777777653 278999999999999999999999999999999988887766532110 01110
Q ss_pred ---CC-cccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCC
Q 046077 148 ---GE-TRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGI 223 (456)
Q Consensus 148 ---~~-~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 223 (456)
.+ ...+||++. ++..+++...... .......+........+++++++|||++||+.+++++.+.+++
T Consensus 164 ~~~~~~~~~iPg~~~---l~~~dlp~~~~~~------~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~ 234 (459)
T PLN02448 164 ESGEERVDYIPGLSS---TRLSDLPPIFHGN------SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPF 234 (459)
T ss_pred cccCCccccCCCCCC---CChHHCchhhcCC------chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCC
Confidence 11 124778765 6666776544321 0000011112223345677999999999999999999887777
Q ss_pred CEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 046077 224 PAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPG 303 (456)
Q Consensus 224 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~ 303 (456)
+++.|||+.+....+... . + ......+.++.+|++.++++++|||||||+.....+++.+++++|+.++.
T Consensus 235 ~~~~iGP~~~~~~~~~~~----~---~---~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~ 304 (459)
T PLN02448 235 PVYPIGPSIPYMELKDNS----S---S---SNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGV 304 (459)
T ss_pred ceEEecCcccccccCCCc----c---c---cccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 899999997642100000 0 0 00001234799999999889999999999988889999999999999999
Q ss_pred CEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHH
Q 046077 304 PFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAK 383 (456)
Q Consensus 304 ~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~ 383 (456)
+|||++... ..++.+.+. .|.++.+|+||.+||.|+++++|||||||||++|++++|||||++|+..||+.||+
T Consensus 305 ~~lw~~~~~-----~~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~ 378 (459)
T PLN02448 305 RFLWVARGE-----ASRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSK 378 (459)
T ss_pred CEEEEEcCc-----hhhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHH
Confidence 999987642 124444442 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccEEEEecC--CCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhh
Q 046077 384 LVVNYIKVGLRVTDD--LSETVKKGDIAEGIERLMSDE-----EMKTRAAILQVKFEQGF--PASSVAALNAFSDFISR 453 (456)
Q Consensus 384 ~~~~~~G~g~~~~~~--~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~l~~ 453 (456)
++++.||+|+.+..+ +.+.+++++|+++|+++|+++ +||++|++++++++.+. ||||.++++++++.+.+
T Consensus 379 ~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 379 LIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 999778999998532 123579999999999999763 69999999999999875 89999999999998853
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-43 Score=351.91 Aligned_cols=398 Identities=16% Similarity=0.200 Sum_probs=264.9
Q ss_pred eEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC------C-------CC
Q 046077 4 EIFVV-TGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP------M-------PP 69 (456)
Q Consensus 4 ~il~~-~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~-------~~ 69 (456)
+|+++ |.++.+|..=+-.|+++|++|||+||++++.... ..... ...+++...++..... . ..
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH--LCGNITEIDASLSVEYFKKLVKSSAVFRKRGV 98 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC--CCCCEEEEEcCCChHHHHHHHhhhhHHHhhhh
Confidence 67755 7789999999999999999999999999775311 11110 1125555555322111 0 00
Q ss_pred C---ch----H----HHHH-----HHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHc-CCCeEEEechhHHHHH
Q 046077 70 S---DP----L----SQQA-----AKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKF-NIPVVSLFTFGACAAA 132 (456)
Q Consensus 70 ~---~~----~----~~~~-----~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~~~ 132 (456)
. .. . ...+ ...+.+++++ ++ .++|+||+|.+..++..+|+.+ ++|.|.+++...+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~----~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~ 173 (507)
T PHA03392 99 VADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KN----NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAEN 173 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CC----CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhH
Confidence 0 00 0 0001 1122333321 01 2799999998888888899999 9998877664433221
Q ss_pred HHHHHhhhccCCCCCCCcccCCCC----CCCccCC--cccccc-------ccCCCCCCCCCCCCCCCC-CCCCcccccCC
Q 046077 133 MEWAAWKLDATDIKPGETRLIPGL----PEEMALT--YSDIRR-------KSSVPSRGGRGGPPKPGD-KPPWVPEIEGS 198 (456)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~pgl----~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 198 (456)
..... .. |..+..+|.+ ...+++. ..++-. +.........-.....+. ...+.....+.
T Consensus 174 ~~~~g--g~-----p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 174 FETMG--AV-----SRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred HHhhc--cC-----CCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 11100 00 1111222221 1111111 000000 000000000000000011 22233445667
Q ss_pred eEEEEcCCccccHHHHHHHHhhcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEE
Q 046077 199 IALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYV 278 (456)
Q Consensus 199 ~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v 278 (456)
+.+++|+...++.+ +.+++++.+|||+..+. .+..+.++++.+|++.++ +++|||
T Consensus 247 ~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~------------------~~~~~l~~~l~~fl~~~~-~g~V~v 301 (507)
T PHA03392 247 QLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHK------------------KPPQPLDDYLEEFLNNST-NGVVYV 301 (507)
T ss_pred cEEEEecCccccCC------CCCCCCeeeecccccCC------------------CCCCCCCHHHHHHHhcCC-CcEEEE
Confidence 78899997777665 57889999999987632 012345788999998764 469999
Q ss_pred ecCCCCCC---CHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCC
Q 046077 279 AFGSEVGP---TREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCG 355 (456)
Q Consensus 279 ~~GS~~~~---~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG 355 (456)
||||+... ..+.+..+++++++.+.++||..+.... + ...++|+.+.+|+||.++|.||.|++||||||
T Consensus 302 S~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---~-----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG 373 (507)
T PHA03392 302 SFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---A-----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGG 373 (507)
T ss_pred ECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---c-----ccCCCceEEecCCCHHHHhcCCCCCEEEecCC
Confidence 99998753 4678888999999999999999875321 1 11357899999999999999999999999999
Q ss_pred chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Q 046077 356 WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQG 435 (456)
Q Consensus 356 ~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~ 435 (456)
+||++||+++|||+|++|+..||+.||+|++ ++|+|+.+.. ..+++++|.++|+++++|++|+++|+++++.+++.
T Consensus 374 ~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 374 VQSTDEAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ 449 (507)
T ss_pred cccHHHHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 5599999954 46899999999999999999999999999999986
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 046077 436 FPASSVAALNAFSDFISRK 454 (456)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~ 454 (456)
+.+..+.+..++|++.++
T Consensus 450 -p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 450 -PMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred -CCCHHHHHHHHHHHHHhC
Confidence 223455555777877654
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=8.3e-43 Score=343.60 Aligned_cols=375 Identities=18% Similarity=0.225 Sum_probs=247.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC--------CCCchHHHHHHH
Q 046077 8 VTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM--------PPSDPLSQQAAK 79 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~ 79 (456)
+.+|++||++|++.||++|+++||+|++++++.+.+.+++. ++.|..++...... .......+....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA-----GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLD 75 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc-----CCEEEecCCcCccccccccccCcchHHHHHHHHH
Confidence 36899999999999999999999999999999999888887 78888887654321 011111221222
Q ss_pred ----HHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCC
Q 046077 80 ----DLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPG 155 (456)
Q Consensus 80 ----~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 155 (456)
.+.++++.+.+. +||+||+|.+++++..+|+.+|||+|.+++.+..... ..+.. . +.........+.
T Consensus 76 ~~~~~~~~l~~~~~~~----~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~ 146 (392)
T TIGR01426 76 EAEDVLPQLEEAYKGD----RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE--FEEMV-S--PAGEGSAEEGAI 146 (392)
T ss_pred HHHHHHHHHHHHhcCC----CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc--ccccc-c--ccchhhhhhhcc
Confidence 222222222222 8999999998889999999999999988654321100 00000 0 000000000000
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccc--cCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCc
Q 046077 156 LPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEI--EGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLP 233 (456)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~ 233 (456)
... ....+...++. .....+.-......+ ......+..+ ++.+++....++++++++||+..
T Consensus 147 ~~~----~~~~~~~~~~~-------~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 147 AER----GLAEYVARLSA-------LLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSFTFVGPCIG 210 (392)
T ss_pred ccc----hhHHHHHHHHH-------HHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCeEEECCCCC
Confidence 000 00000000000 000000000000111 1111133333 33344444567788999999875
Q ss_pred cccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 046077 234 EQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGS 313 (456)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (456)
.. . +...|+...+++++|||++||+.....+.+..+++++.+.+.+++|+++.+.
T Consensus 211 ~~-------------------~------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 211 DR-------------------K------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred Cc-------------------c------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 32 0 1123666666788999999998776777888899999999999999987643
Q ss_pred CCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEE
Q 046077 314 EEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGL 393 (456)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~ 393 (456)
. .+.+.. .++|+.+.+|+|+.++|.| ++++|||||+||++|++++|+|+|++|...||+.||++++ ++|+|+
T Consensus 266 ~---~~~~~~--~~~~v~~~~~~p~~~ll~~--~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~-~~g~g~ 337 (392)
T TIGR01426 266 D---PADLGE--LPPNVEVRQWVPQLEILKK--ADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIA-ELGLGR 337 (392)
T ss_pred C---hhHhcc--CCCCeEEeCCCCHHHHHhh--CCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHH-HCCCEE
Confidence 1 112221 2468999999999999955 5599999999999999999999999999999999999999 569999
Q ss_pred EEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 046077 394 RVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDF 450 (456)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 450 (456)
.+.. ..+++++|.++|+++++|++|+++++++++.+++. ++..++++.+.+.
T Consensus 338 ~l~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~--~~~~~aa~~i~~~ 389 (392)
T TIGR01426 338 HLPP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA--GGARRAADEIEGF 389 (392)
T ss_pred Eecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHh
Confidence 8853 46899999999999999999999999999999987 5555555544443
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.4e-44 Score=367.46 Aligned_cols=393 Identities=23% Similarity=0.279 Sum_probs=211.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCC--C-Cc----hH---
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMP--P-SD----PL--- 73 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-~~----~~--- 73 (456)
+|+++| ++.+|+.++..|+++|++|||+||++++.... .+... ....+++..++.+..... . .. ..
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS--KPSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc--cccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 677887 48899999999999999999999999876422 12211 112466666655443210 0 00 00
Q ss_pred ------HHHHHHHHHHHHhh---hc----------CCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHH
Q 046077 74 ------SQQAAKDLEANLAS---RS----------ENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAME 134 (456)
Q Consensus 74 ------~~~~~~~~~~ll~~---~~----------~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~ 134 (456)
.......+..+.+. .+ +..+..++|++|+|.+..++..+|+.+|||.+.+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~-- 155 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDL-- 155 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCC--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchh--
Confidence 00001111111100 00 0000016899999988778888999999998864322111000
Q ss_pred HHHhhhccCCCCCCCcccCCCCCCCccCCccccccccCCCC-----------------CCCCCCCCC---CCCCCCCccc
Q 046077 135 WAAWKLDATDIKPGETRLIPGLPEEMALTYSDIRRKSSVPS-----------------RGGRGGPPK---PGDKPPWVPE 194 (456)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~---~~~~~~~~~~ 194 (456)
.......+..+..+|.. ..++...+.... .....+... .+.-......
T Consensus 156 -----~~~~~g~p~~psyvP~~-------~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
T PF00201_consen 156 -----SSFSGGVPSPPSYVPSM-------FSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFREL 223 (500)
T ss_dssp -----TCCTSCCCTSTTSTTCB-------CCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHH
T ss_pred -----hhhccCCCCChHHhccc-------cccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHH
Confidence 00000001111111111 111111111000 000000000 0000011112
Q ss_pred ccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCc
Q 046077 195 IEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGS 274 (456)
Q Consensus 195 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (456)
+.+.+.+++|+...++.+ +.+.|++.+||++... +..+.+.++.+|++...+++
T Consensus 224 ~~~~~l~l~ns~~~ld~p------rp~~p~v~~vGgl~~~--------------------~~~~l~~~~~~~~~~~~~~~ 277 (500)
T PF00201_consen 224 LSNASLVLINSHPSLDFP------RPLLPNVVEVGGLHIK--------------------PAKPLPEELWNFLDSSGKKG 277 (500)
T ss_dssp HHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S------------------------TCHHHHHHHTSTTTTTE
T ss_pred HHHHHHHhhhccccCcCC------cchhhcccccCccccc--------------------cccccccccchhhhccCCCC
Confidence 223334455665544433 3344678889988653 22346788999998855778
Q ss_pred eEEEecCCCCCCCHHH-HHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEec
Q 046077 275 VLYVAFGSEVGPTREE-YRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSH 353 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~h 353 (456)
+|||||||+....++. ...+++++++++.+|||.+.+.. +.. .++|+.+.+|+||.++|.||++++||||
T Consensus 278 vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~----~~~-----l~~n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 278 VVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP----PEN-----LPKNVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp EEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH----GCH-----HHTTEEEESS--HHHHHTSTTEEEEEES
T ss_pred EEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc----ccc-----ccceEEEeccccchhhhhcccceeeeec
Confidence 9999999998755555 67799999999999999997521 111 1367899999999999999999999999
Q ss_pred CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 046077 354 CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFE 433 (456)
Q Consensus 354 gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~ 433 (456)
||+||++||+++|||+|++|+++||+.||+++++ .|+|+.+.. ..+++++|.++|+++|+|++|++||+++++.++
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~ 424 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFR 424 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999995 599999964 578999999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHhhc
Q 046077 434 QGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~ 454 (456)
+. +-+..+.+..++|++.++
T Consensus 425 ~~-p~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 425 DR-PISPLERAVWWIEYVARH 444 (500)
T ss_dssp ---------------------
T ss_pred cC-CCCHHHHHHHHHHHHHhc
Confidence 86 344556666777777654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=8.6e-42 Score=337.89 Aligned_cols=378 Identities=16% Similarity=0.095 Sum_probs=238.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC----C-------CC-
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM----P-------PS- 70 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~-------~~- 70 (456)
|||+|+++|+.||++|++.||++|+++||+|+|++++.+...+++. +++|..++...... . ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA-----GLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc-----CCceeeCCCCHHHHHhhhhhcccccccch
Confidence 6999999999999999999999999999999999999888877776 78888877653210 0 00
Q ss_pred ---ch----HHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccC
Q 046077 71 ---DP----LSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDAT 143 (456)
Q Consensus 71 ---~~----~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 143 (456)
.. ........++++++...+. +||+||+|.++.++..+|+.+|||++.++++++.......++. ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-~~~~ 150 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARDW----GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL-GRAN 150 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-chHH
Confidence 00 1111222333333333222 9999999998889999999999999999877654221110000 0000
Q ss_pred CCCCCCcccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCC
Q 046077 144 DIKPGETRLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGI 223 (456)
Q Consensus 144 ~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 223 (456)
.... .......+...+.............. ...............+..++... ...++.
T Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 209 (401)
T cd03784 151 LRLY-ALLEAELWQDLLGAWLRARRRRLGLP------------PLSLLDGSDVPELYGFSPAVLPP--------PPDWPR 209 (401)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC------------CCcccccCCCcEEEecCcccCCC--------CCCccc
Confidence 0000 00000000000000000000000000 00000000000111111121111 122333
Q ss_pred CEeeec-ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCH-HHHHHHHHHHHhC
Q 046077 224 PAWGVG-LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTR-EEYRELAGALEES 301 (456)
Q Consensus 224 ~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~-~~~~~~~~al~~~ 301 (456)
+..++| ++.... .....+.++..|++. ++++|||++||+..... +.+..+++++...
T Consensus 210 ~~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 210 FDLVTGYGFRDVP-------------------YNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred cCcEeCCCCCCCC-------------------CCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 445553 322211 111234567788865 45699999999987664 5556689999999
Q ss_pred CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhH
Q 046077 302 PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFN 381 (456)
Q Consensus 302 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~n 381 (456)
+.++||+++..... . ...++|+.+.+|+||.++|.| |+++|||||+||++|++++|||+|++|+..||+.|
T Consensus 269 ~~~~i~~~g~~~~~---~----~~~~~~v~~~~~~p~~~ll~~--~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~ 339 (401)
T cd03784 269 GQRAILSLGWGGLG---A----EDLPDNVRVVDFVPHDWLLPR--CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFW 339 (401)
T ss_pred CCeEEEEccCcccc---c----cCCCCceEEeCCCCHHHHhhh--hheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHH
Confidence 99999999865321 1 123578999999999999955 66999999999999999999999999999999999
Q ss_pred HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 382 AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 382 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
|++++ .+|+|+.+.. ..+++++|.++|++++++ +++++++++++++++. ++ ...+.++++
T Consensus 340 a~~~~-~~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~~--~g-~~~~~~~ie 399 (401)
T cd03784 340 AARVA-ELGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIREE--DG-VPSAADVIE 399 (401)
T ss_pred HHHHH-HCCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHhc--cC-HHHHHHHHh
Confidence 99999 5699998853 357999999999999985 5667788888888766 33 444445444
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-40 Score=320.93 Aligned_cols=385 Identities=18% Similarity=0.161 Sum_probs=237.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC------CCCCch---
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP------MPPSDP--- 72 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~--- 72 (456)
+|||+++..|++||++|+++||++|.++||+|+|++++.+.+.+++. ++.|..++....+ ......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-----g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-----GLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-----CcceeeccccCChhhhhhhhhhccchhH
Confidence 57999999999999999999999999999999999999999999998 6666665554111 000011
Q ss_pred -HHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcc
Q 046077 73 -LSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETR 151 (456)
Q Consensus 73 -~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (456)
..........++++-+.+. .+|+++.|... +...+++..++|++.......+.......+..... ..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 146 (406)
T COG1819 76 RLLQQFKKLIRELLELLREL----EPDLVVDDARL-SLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVG----IAGKL 146 (406)
T ss_pred HHhhhhhhhhHHHHHHHHhc----chhhhhcchhh-hhhhhhhhcccchhhhhhhhccCCcccccCccccc----ccccc
Confidence 1122222233333323333 89999999664 44499999999999865544332222111110000 00001
Q ss_pred cCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHH---hhcCCCEeee
Q 046077 152 LIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMA---DQIGIPAWGV 228 (456)
Q Consensus 152 ~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~---~~~~~~v~~v 228 (456)
.++..+ +............. .... ..................+..+-..++..+.+... ..++....++
T Consensus 147 ~~~~~~----~~~~~~~~~~~~~~--~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (406)
T COG1819 147 PIPLYP----LPPRLVRPLIFARS--WLPK--LVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYI 218 (406)
T ss_pred cccccc----cChhhccccccchh--hhhh--hhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcc
Confidence 111110 00000000000000 0000 00000000000000000000110111111111000 1111122333
Q ss_pred cccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 046077 229 GLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWV 308 (456)
Q Consensus 229 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (456)
||+.... ..+...| ...++++||+|+||.... .+.+..+++++.+++.++|+.
T Consensus 219 ~~~~~~~------------------------~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~ 271 (406)
T COG1819 219 GPLLGEA------------------------ANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVS 271 (406)
T ss_pred ccccccc------------------------cccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEe
Confidence 3333221 1223334 234567999999999977 777888999999999999999
Q ss_pred EcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHH
Q 046077 309 VQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNY 388 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~ 388 (456)
++. .. . .....+.|+.+.+|+||.+++ +.+++||||||+||++|||++|||+|++|...||+.||.|++ +
T Consensus 272 ~~~-~~-----~-~~~~~p~n~~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve-~ 341 (406)
T COG1819 272 LGG-AR-----D-TLVNVPDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVE-E 341 (406)
T ss_pred ccc-cc-----c-ccccCCCceEEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHH-H
Confidence 875 21 1 122346789999999999999 555599999999999999999999999999999999999999 6
Q ss_pred hccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 389 IKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 389 ~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
+|+|+.+.. ..++++.|+++|+++|+|++|+++++++++.++.. ++ .+.+.++++.+
T Consensus 342 ~G~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~--~g-~~~~a~~le~~ 398 (406)
T COG1819 342 LGAGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE--DG-PAKAADLLEEF 398 (406)
T ss_pred cCCceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc--cc-HHHHHHHHHHH
Confidence 699999964 47999999999999999999999999999999998 34 55555666654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.3e-40 Score=338.43 Aligned_cols=414 Identities=24% Similarity=0.291 Sum_probs=254.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC-C------CCCCeEEEecCCCCCCCCCC-----
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF-T------QYPRTRTTQITSSGRPMPPS----- 70 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~------~~~~i~~~~~~~~~~~~~~~----- 70 (456)
.|++++++|++||++|++.||+.|+++||+||++++........... . ......+...+++.......
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDI 85 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHHH
Confidence 58899999999999999999999999999999999886554433210 0 00112222222111111110
Q ss_pred ----chHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcC-CCeEEEechhHHHHHHHHHHhhh-ccCC
Q 046077 71 ----DPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFN-IPVVSLFTFGACAAAMEWAAWKL-DATD 144 (456)
Q Consensus 71 ----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~~-~~~~ 144 (456)
......+...+++.+........ .++|++|+|.+..|...+|...+ |+..++.+.++.......+.... .+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~~ 164 (496)
T KOG1192|consen 86 SESLLELNKTCEDLLRDPLEKLLLLKS-EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPSP 164 (496)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhhc-CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCcc
Confidence 11112222333333332221110 14999999998778887777765 99999888887766654432111 0000
Q ss_pred CCCC--CcccCCCCCCCccCCccccccccCCCCC-------CCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHH
Q 046077 145 IKPG--ETRLIPGLPEEMALTYSDIRRKSSVPSR-------GGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIK 215 (456)
Q Consensus 145 ~~~~--~~~~~pgl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~ 215 (456)
..+. ....+++.... +....++........ ..................+.++...++|+ ....
T Consensus 165 ~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~------~~~~ 236 (496)
T KOG1192|consen 165 FSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNS------NPLL 236 (496)
T ss_pred cCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEcc------Cccc
Confidence 0000 00111111000 000111110000000 00000000000011112223333444444 3322
Q ss_pred HH-HhhcCCCEeeecccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCC--ceEEEecCCCC---CCCHH
Q 046077 216 YM-ADQIGIPAWGVGLLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRG--SVLYVAFGSEV---GPTRE 289 (456)
Q Consensus 216 ~~-~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vv~v~~GS~~---~~~~~ 289 (456)
.. .....+++++|||+..... ... ...+.+|++..+.. ++|||||||+. ....+
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~------------------~~~--~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~ 296 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDS------------------KQK--SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEE 296 (496)
T ss_pred CCCCCCCCCCceEECcEEecCc------------------ccc--ccccHHHHHHHhhccCCeEEEECCcccccccCCHH
Confidence 22 2335678999999987521 111 11345566655544 79999999999 67789
Q ss_pred HHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHh-hcccCcceEEecCCchhHHHHHHhCC
Q 046077 290 EYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALI-LNHISTGGFLSHCGWNSTMEAIVHGV 367 (456)
Q Consensus 290 ~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~-l~h~~~~~~I~hgG~gt~~e~l~~Gv 367 (456)
+..+++.+++.+ +++|+|+........+++++.++ ...|+...+|+||.++ |.|+++++|||||||||++|++++||
T Consensus 297 ~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~Gv 375 (496)
T KOG1192|consen 297 QKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGV 375 (496)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCC
Confidence 999999999999 88999999875433234444433 3457888899999998 59999999999999999999999999
Q ss_pred CeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 046077 368 PFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAF 447 (456)
Q Consensus 368 P~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 447 (456)
|+|++|+.+||+.||+++++++++++... .+.+.+.+.+++.+++++++|.++++++++.+++. +.+. +.+...
T Consensus 376 P~v~~Plf~DQ~~Na~~i~~~g~~~v~~~----~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~-p~~~-~~~~~~ 449 (496)
T KOG1192|consen 376 PMVCVPLFGDQPLNARLLVRHGGGGVLDK----RDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQ-PISP-ELAVKW 449 (496)
T ss_pred ceecCCccccchhHHHHHHhCCCEEEEeh----hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcC-CCCH-HHHHHH
Confidence 99999999999999999998855555553 34555559999999999999999999999999876 3444 555555
Q ss_pred HHHHh
Q 046077 448 SDFIS 452 (456)
Q Consensus 448 ~~~l~ 452 (456)
+|+..
T Consensus 450 ~e~~~ 454 (496)
T KOG1192|consen 450 VEFVA 454 (496)
T ss_pred HHHHH
Confidence 55554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=8.2e-29 Score=238.40 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=205.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHH---HH-
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQ---AA- 78 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~- 78 (456)
++|++.+.++-||++|.++||++|.++||+|+|++.+... +.......++.+..++............... ..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~---e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI---EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc---ccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999977533 2221111267777776443221111111111 12
Q ss_pred --HHHHHHHhhhcCCCCCCCCcEEEec--CCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCC
Q 046077 79 --KDLEANLASRSENPDFPAPLCAIVD--FQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIP 154 (456)
Q Consensus 79 --~~~~~ll~~~~~~~~~~~pD~vI~D--~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (456)
.....++++. +||+||+. +.+.++..+|+.+|+|++.+ +.+.+|
T Consensus 79 ~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~-------------------------e~n~~~ 126 (352)
T PRK12446 79 GVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLH-------------------------ESDMTP 126 (352)
T ss_pred HHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEE-------------------------CCCCCc
Confidence 2233445555 99999976 34567889999999999998 456666
Q ss_pred CCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcC-CCEeeecccCc
Q 046077 155 GLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIG-IPAWGVGLLLP 233 (456)
Q Consensus 155 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~-~~v~~vGp~~~ 233 (456)
|+.+. .+.+....+..+|++. . +.++ .++.++|+-+.
T Consensus 127 g~~nr----------------------------------~~~~~a~~v~~~f~~~----~----~~~~~~k~~~tG~Pvr 164 (352)
T PRK12446 127 GLANK----------------------------------IALRFASKIFVTFEEA----A----KHLPKEKVIYTGSPVR 164 (352)
T ss_pred cHHHH----------------------------------HHHHhhCEEEEEccch----h----hhCCCCCeEEECCcCC
Confidence 66541 1111111223333221 1 1122 35778887664
Q ss_pred cccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCC
Q 046077 234 EQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPG 312 (456)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~ 312 (456)
+.. .....+...+.++..+++++|+|+.||++... ++.+.+++..+.. +.+++|++|.+
T Consensus 165 ~~~-------------------~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~ 224 (352)
T PRK12446 165 EEV-------------------LKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG 224 (352)
T ss_pred ccc-------------------ccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc
Confidence 321 00112233333444566789999999999866 4555566666543 48899999865
Q ss_pred CCCcCcchhhhhhCCCCeEEeccc-CHH-HhhcccCcceEEecCCchhHHHHHHhCCCeeccCCc-----cchhhHHHHH
Q 046077 313 SEEYMPHDLDNRVSNRGLIIHAWA-PQA-LILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR-----GDQYFNAKLV 385 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~v-p~~-~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~-----~dQ~~na~~~ 385 (456)
+.+ +.... ..++.+.+|+ +++ +++ ..+|++|||||.+|++|++++|+|+|++|+. .||..||+.+
T Consensus 225 ~~~---~~~~~---~~~~~~~~f~~~~m~~~~--~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 225 NLD---DSLQN---KEGYRQFEYVHGELPDIL--AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred hHH---HHHhh---cCCcEEecchhhhHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 311 11111 1245666887 544 567 4555999999999999999999999999984 5899999999
Q ss_pred HHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 386 VNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 386 ~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
++ .|+|..+. +.+++++.|.+++.++++|++.
T Consensus 297 ~~-~g~~~~l~---~~~~~~~~l~~~l~~ll~~~~~ 328 (352)
T PRK12446 297 ER-QGYASVLY---EEDVTVNSLIKHVEELSHNNEK 328 (352)
T ss_pred HH-CCCEEEcc---hhcCCHHHHHHHHHHHHcCHHH
Confidence 95 59999885 2578999999999999988643
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.6e-27 Score=226.47 Aligned_cols=336 Identities=18% Similarity=0.168 Sum_probs=225.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchH------HH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNY-HTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPL------SQ 75 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~ 75 (456)
+.|++...++-||+.|.++|+++|.++|+ +|.++.+....+.... ...++.++.++.+.......... ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~---~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV---KQYGIEFELIPSGGLRRKGSLKLLKAPFKLL 77 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec---cccCceEEEEecccccccCcHHHHHHHHHHH
Confidence 46788888999999999999999999999 6888877744444333 23378888888887654333222 22
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCcEEEec--CCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccC
Q 046077 76 QAAKDLEANLASRSENPDFPAPLCAIVD--FQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLI 153 (456)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~pD~vI~D--~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (456)
......+.++++. +||+||+- +.+.++..+|..+|||.+++ +.+..
T Consensus 78 ~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih-------------------------Eqn~~ 125 (357)
T COG0707 78 KGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIH-------------------------EQNAV 125 (357)
T ss_pred HHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEE-------------------------ecCCC
Confidence 2344556677777 99999974 56788899999999999998 67888
Q ss_pred CCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeec-ccC
Q 046077 154 PGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVG-LLL 232 (456)
Q Consensus 154 pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vG-p~~ 232 (456)
||+.+.+. .+....+..+|++.+.. .. +.+++.+| |+.
T Consensus 126 ~G~ank~~----------------------------------~~~a~~V~~~f~~~~~~----~~---~~~~~~tG~Pvr 164 (357)
T COG0707 126 PGLANKIL----------------------------------SKFAKKVASAFPKLEAG----VK---PENVVVTGIPVR 164 (357)
T ss_pred cchhHHHh----------------------------------HHhhceeeecccccccc----CC---CCceEEecCccc
Confidence 88875211 11111122333221000 00 01355555 333
Q ss_pred ccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcC
Q 046077 233 PEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQP 311 (456)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~ 311 (456)
.+. . . .+..-..... ..++++|+|+.||++... ++.+.++...+.+ +..+++.+|.
T Consensus 165 ~~~-------------------~-~-~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~ 221 (357)
T COG0707 165 PEF-------------------E-E-LPAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK 221 (357)
T ss_pred HHh-------------------h-c-cchhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc
Confidence 211 0 0 1111111211 226779999999999866 5666666666665 6788888887
Q ss_pred CCCCcCcchhhhhhCCCC-eEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCc----cchhhHHHHHH
Q 046077 312 GSEEYMPHDLDNRVSNRG-LIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR----GDQYFNAKLVV 386 (456)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~-v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~----~dQ~~na~~~~ 386 (456)
+.. +.........| +.+.+|.+++.-+. ..+|++||++|++|+.|++++|+|+|++|+. .||..||+.++
T Consensus 222 ~~~----~~~~~~~~~~~~~~v~~f~~dm~~~~-~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~ 296 (357)
T COG0707 222 NDL----EELKSAYNELGVVRVLPFIDDMAALL-AAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLE 296 (357)
T ss_pred chH----HHHHHHHhhcCcEEEeeHHhhHHHHH-HhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHH
Confidence 531 22222222233 88889999876332 5667999999999999999999999999983 58999999999
Q ss_pred HHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 387 NYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 387 ~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
++ |+|+.+.. .+++.+++.+.|.+++++++-.+++++.++.+... ++.+.+.++++
T Consensus 297 ~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p---~aa~~i~~~~~ 352 (357)
T COG0707 297 KA-GAALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKLGKP---DAAERIADLLL 352 (357)
T ss_pred hC-CCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHH
Confidence 65 99999963 56899999999999999866555555555554443 44444444433
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=3.2e-23 Score=198.69 Aligned_cols=299 Identities=18% Similarity=0.164 Sum_probs=180.3
Q ss_pred ceEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC----CCCchHHH--
Q 046077 3 REIFVVTGY-WQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM----PPSDPLSQ-- 75 (456)
Q Consensus 3 ~~il~~~~~-~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~-- 75 (456)
|||++...+ +.||+...++||++| +||+|++++.....+.+.+. +....++.-.... ........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------FPVREIPGLGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------cCEEEccCceEeccCCccchHHHHHHH
Confidence 688887777 999999999999999 59999999988665555443 2333332221110 00001111
Q ss_pred -----HHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCc
Q 046077 76 -----QAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGET 150 (456)
Q Consensus 76 -----~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (456)
.....++++++.+.+. +||+||+|.. +.+..+|+..|||++.+........
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~----~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~------------------- 128 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLREF----RPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH------------------- 128 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHhc----CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc-------------------
Confidence 1122333333333222 9999999954 4577899999999998855543210
Q ss_pred ccCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcc-cccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeec
Q 046077 151 RLIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVP-EIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVG 229 (456)
Q Consensus 151 ~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vG 229 (456)
+.... .....+..+... + ... .+..+...+..++. .. ......+.++|
T Consensus 129 ---~~~~~---~~~~~~~~~~~~--------------~--~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~ 177 (318)
T PF13528_consen 129 ---PNFWL---PWDQDFGRLIER--------------Y--IDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVG 177 (318)
T ss_pred ---ccCCc---chhhhHHHHHHH--------------h--hhhccCCcccceecCCcc-cc--------ccccccccccC
Confidence 00000 000000000000 0 000 01222223333322 00 00011355677
Q ss_pred ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CCEEEE
Q 046077 230 LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESP-GPFIWV 308 (456)
Q Consensus 230 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~-~~~i~~ 308 (456)
|+..... .+.. ..+++.|+|++|..... .++++++..+ .++++.
T Consensus 178 p~~~~~~---------------------------~~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~ 222 (318)
T PF13528_consen 178 PIIRPEI---------------------------RELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF 222 (318)
T ss_pred chhcccc---------------------------cccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE
Confidence 7765321 0000 12345899999987543 5566676665 566555
Q ss_pred EcCCCCCcCcchhhhhhCCCCeEEeccc--CHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCC--ccchhhHHHH
Q 046077 309 VQPGSEEYMPHDLDNRVSNRGLIIHAWA--PQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPI--RGDQYFNAKL 384 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~v--p~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~--~~dQ~~na~~ 384 (456)
|... .....+|+.+.+|. ...++| +.++++|||||.||++|++++|+|++++|. ..+|..||+.
T Consensus 223 -g~~~---------~~~~~~ni~~~~~~~~~~~~~m--~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~ 290 (318)
T PF13528_consen 223 -GPNA---------ADPRPGNIHVRPFSTPDFAELM--AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARK 290 (318)
T ss_pred -cCCc---------ccccCCCEEEeecChHHHHHHH--HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHH
Confidence 5432 11125789998887 345677 677799999999999999999999999999 6799999999
Q ss_pred HHHHhccEEEEecCCCCcccHHHHHHHHHHH
Q 046077 385 VVNYIKVGLRVTDDLSETVKKGDIAEGIERL 415 (456)
Q Consensus 385 ~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~ 415 (456)
++ ++|+|+.+.. .+++++.|++.|+++
T Consensus 291 l~-~~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 291 LE-ELGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred HH-HCCCeEEccc---ccCCHHHHHHHHhcC
Confidence 99 6699999853 578999999999764
No 31
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=6.3e-21 Score=185.83 Aligned_cols=337 Identities=16% Similarity=0.119 Sum_probs=204.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC--cCCCCCCCCCCCCeEEEecCCCCCCCCCCchH------
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL--VSAIPPSFTQYPRTRTTQITSSGRPMPPSDPL------ 73 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------ 73 (456)
+|+|+|+..+.-||+.-.+.||+.|.++||+|++++.+.. .+..++ .+++++.++............
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSGGLRRKGSLANLKAPFK 75 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----CCCcEEEEeccCcCCCChHHHHHHHHH
Confidence 1889999988889999999999999999999999987642 112222 267777776543222221111
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCC--cccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcc
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQ--VGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETR 151 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (456)
.......+..++++. +||+|++... .+.+..+++..++|++.+...
T Consensus 76 ~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------------------- 123 (357)
T PRK00726 76 LLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------------------- 123 (357)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-------------------------
Confidence 122333445556555 8999998852 345567788899999865110
Q ss_pred cCCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeeccc
Q 046077 152 LIPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLL 231 (456)
Q Consensus 152 ~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~ 231 (456)
..++.. .++ ....++.++..+ + ..+. +.-+.++.++|.-
T Consensus 124 ~~~~~~----------~r~-----------------------~~~~~d~ii~~~-~----~~~~---~~~~~~i~vi~n~ 162 (357)
T PRK00726 124 AVPGLA----------NKL-----------------------LARFAKKVATAF-P----GAFP---EFFKPKAVVTGNP 162 (357)
T ss_pred CCccHH----------HHH-----------------------HHHHhchheECc-h----hhhh---ccCCCCEEEECCC
Confidence 000000 000 001122222211 1 0000 0112357777755
Q ss_pred CccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHH-HHHHHHhCCC--CEEEE
Q 046077 232 LPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRE-LAGALEESPG--PFIWV 308 (456)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~ 308 (456)
+....+ . .. ....-+...++.++|++..|+... ..+.. +.+++..... .++++
T Consensus 163 v~~~~~-----------------~---~~-~~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~ 218 (357)
T PRK00726 163 VREEIL-----------------A---LA-APPARLAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQ 218 (357)
T ss_pred CChHhh-----------------c---cc-chhhhccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEE
Confidence 432110 0 00 001112222344567776666432 22222 3355444332 45566
Q ss_pred EcCCCCCcCcchhhhhhC-CCCeEEecccC-HHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCC----ccchhhHH
Q 046077 309 VQPGSEEYMPHDLDNRVS-NRGLIIHAWAP-QALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPI----RGDQYFNA 382 (456)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~vp-~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~----~~dQ~~na 382 (456)
+|.+.. +.+.+... +-++.+.+|+. ..+++ +.++++|+|+|.++++|++++|+|+|++|. .+||..|+
T Consensus 219 ~G~g~~----~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 292 (357)
T PRK00726 219 TGKGDL----EEVRAAYAAGINAEVVPFIDDMAAAY--AAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANA 292 (357)
T ss_pred cCCCcH----HHHHHHhhcCCcEEEeehHhhHHHHH--HhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHH
Confidence 676532 22222222 22378889984 45677 667799999999999999999999999997 46899999
Q ss_pred HHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 383 KLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 383 ~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
..+.+. |.|+.+.. .++++++|.++|.++++|+++++++.+.+++.... .+..+.++.+++.++
T Consensus 293 ~~i~~~-~~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 293 RALVDA-GAALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALGKP--DAAERLADLIEELAR 356 (357)
T ss_pred HHHHHC-CCEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCc--CHHHHHHHHHHHHhh
Confidence 999955 99999864 34679999999999999999998888877776554 566666666665554
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=6.1e-21 Score=182.59 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccC--HHHhhcccCcce
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAP--QALILNHISTGG 349 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp--~~~~l~h~~~~~ 349 (456)
+++.|+|.+||... ..++++++..+ .+.++++... ...+. ..+|+.+.+|.| ..+.| +.|++
T Consensus 187 ~~~~iLv~~g~~~~------~~l~~~l~~~~-~~~~i~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~l--~~ad~ 250 (321)
T TIGR00661 187 GEDYILVYIGFEYR------YKILELLGKIA-NVKFVCYSYE--VAKNS-----YNENVEIRRITTDNFKELI--KNAEL 250 (321)
T ss_pred CCCcEEEECCcCCH------HHHHHHHHhCC-CeEEEEeCCC--CCccc-----cCCCEEEEECChHHHHHHH--HhCCE
Confidence 34578888888642 34566676654 2344444221 11111 135788889997 23445 77789
Q ss_pred EEecCCchhHHHHHHhCCCeeccCCcc--chhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 350 FLSHCGWNSTMEAIVHGVPFLAWPIRG--DQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 350 ~I~hgG~gt~~e~l~~GvP~v~~P~~~--dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
+|||||++|++|++++|+|++++|+.. ||..||+.++ +.|+|+.+.. .++ ++.+++.++++|+.|
T Consensus 251 vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~---~~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 251 VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEY---KEL---RLLEAILDIRNMKRY 317 (321)
T ss_pred EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcCh---hhH---HHHHHHHhccccccc
Confidence 999999999999999999999999965 8999999999 5599999842 222 666666677777654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=1.3e-19 Score=176.06 Aligned_cols=323 Identities=17% Similarity=0.119 Sum_probs=196.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHH------HHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLS------QQA 77 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~ 77 (456)
+|++...+.-||+...+.||+.|.++||+|++++....... .. ....++++..++............. -..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RL--VPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKG 77 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hc--ccccCCceEEEEecCcCCCChHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999987632111 10 0112577777765433211111111 122
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEecC--CcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCC
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVDF--QVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPG 155 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D~--~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 155 (456)
...+..++++. +||+|++.. ...++..+|+..|+|++.+... ..++
T Consensus 78 ~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-------------------------~~~~ 125 (350)
T cd03785 78 VLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-------------------------AVPG 125 (350)
T ss_pred HHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-------------------------CCcc
Confidence 33455666655 999999764 3455677889999999864110 0011
Q ss_pred CCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCccc
Q 046077 156 LPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLPEQ 235 (456)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~~~ 235 (456)
... . .....++.++..+ +...++ .-+.++..+|.-+...
T Consensus 126 ~~~----------~-----------------------~~~~~~~~vi~~s-----~~~~~~---~~~~~~~~i~n~v~~~ 164 (350)
T cd03785 126 LAN----------R-----------------------LLARFADRVALSF-----PETAKY---FPKDKAVVTGNPVREE 164 (350)
T ss_pred HHH----------H-----------------------HHHHhhCEEEEcc-----hhhhhc---CCCCcEEEECCCCchH
Confidence 000 0 0011233333333 111111 1123566666544321
Q ss_pred cccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 046077 236 HWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSE 314 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (456)
. . . ..+. .+.+...+++++|++.+|+..... .+.+.+++..+...+..+++++|.+..
T Consensus 165 ~------------------~-~-~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~ 223 (350)
T cd03785 165 I------------------L-A-LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL 223 (350)
T ss_pred H------------------h-h-hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH
Confidence 0 0 0 0111 333344445557777777765322 122334445554344556667776532
Q ss_pred CcCcchhhhhhC--CCCeEEeccc-CHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCC----ccchhhHHHHHHH
Q 046077 315 EYMPHDLDNRVS--NRGLIIHAWA-PQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPI----RGDQYFNAKLVVN 387 (456)
Q Consensus 315 ~~~~~~~~~~~~--~~~v~~~~~v-p~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~----~~dQ~~na~~~~~ 387 (456)
+.+.+... ..|+.+.+|+ +..++| ..++++|+++|.+|+.|++++|+|+|++|. ..+|..|+..+.+
T Consensus 224 ----~~l~~~~~~~~~~v~~~g~~~~~~~~l--~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~ 297 (350)
T cd03785 224 ----EEVKKAYEELGVNYEVFPFIDDMAAAY--AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK 297 (350)
T ss_pred ----HHHHHHHhccCCCeEEeehhhhHHHHH--HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh
Confidence 22222221 3589999998 445577 566799999999999999999999999986 4689999999995
Q ss_pred HhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 046077 388 YIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFE 433 (456)
Q Consensus 388 ~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~ 433 (456)
. |.|+.+.. ...+.+++.++|+++++|++.++++.+-++...
T Consensus 298 ~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 298 A-GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred C-CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4 99999853 235899999999999999887777666555443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.81 E-value=1.4e-17 Score=161.78 Aligned_cols=321 Identities=16% Similarity=0.132 Sum_probs=181.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHH------HH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLS------QQ 76 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~ 76 (456)
|||+|++.+.-||+...+.||++|.++||+|++++.+.... .......+++++.++............. ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~---~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE---KRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch---hcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 38999999999999988899999999999999998753211 0100113677777765442211111111 12
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcEEEecCC--cccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCC
Q 046077 77 AAKDLEANLASRSENPDFPAPLCAIVDFQ--VGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIP 154 (456)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (456)
....+..++++. +||+|++... ...+..+++.+++|.+.+... ..+
T Consensus 78 ~~~~l~~~i~~~-------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-------------------------~~~ 125 (348)
T TIGR01133 78 AVFQARRILKKF-------KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-------------------------AVP 125 (348)
T ss_pred HHHHHHHHHHhc-------CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-------------------------CCc
Confidence 334455666665 9999998743 344566788999999854110 000
Q ss_pred CCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccc-cCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCc
Q 046077 155 GLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEI-EGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLP 233 (456)
Q Consensus 155 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~ 233 (456)
+.. . +++ +.++.++..+ + ...++. ...++|.-+.
T Consensus 126 ~~~----------~------------------------~~~~~~~d~ii~~~-~----~~~~~~------~~~~i~n~v~ 160 (348)
T TIGR01133 126 GLT----------N------------------------KLLSRFAKKVLISF-P----GAKDHF------EAVLVGNPVR 160 (348)
T ss_pred cHH----------H------------------------HHHHHHhCeeEECc-h----hHhhcC------CceEEcCCcC
Confidence 000 0 000 1223333322 1 111111 1233332221
Q ss_pred cccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCC
Q 046077 234 EQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPG 312 (456)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~ 312 (456)
...+ . ... -.+++...+++++|.+..|+..... .+.+..++..+.+.+.++++++|.+
T Consensus 161 ~~~~-----------------~---~~~-~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~ 219 (348)
T TIGR01133 161 QEIR-----------------S---LPV-PRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKN 219 (348)
T ss_pred HHHh-----------------c---ccc-hhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcc
Confidence 1000 0 000 0112333334446655556655321 1112233344444455666555543
Q ss_pred CCCcCcchhhhhhCCCCe-EEeccc--CHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCc---cchhhHHHHHH
Q 046077 313 SEEYMPHDLDNRVSNRGL-IIHAWA--PQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR---GDQYFNAKLVV 386 (456)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v-~~~~~v--p~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~---~dQ~~na~~~~ 386 (456)
.. +.+.......++ .++.|. +...++ +.+|++|+++|.+|+.|++++|+|+|++|.. .+|..|+..++
T Consensus 220 ~~----~~l~~~~~~~~l~~~v~~~~~~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~ 293 (348)
T TIGR01133 220 DL----EKVKNVYQELGIEAIVTFIDENMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE 293 (348)
T ss_pred hH----HHHHHHHhhCCceEEecCcccCHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH
Confidence 21 233322222221 222344 445677 5666999999988999999999999999873 47888999998
Q ss_pred HHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 046077 387 NYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQ 434 (456)
Q Consensus 387 ~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 434 (456)
+ .|.|..+.. .+.++++|.++++++++|++.++++.+.++....
T Consensus 294 ~-~~~G~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 337 (348)
T TIGR01133 294 D-LGAGLVIRQ---KELLPEKLLEALLKLLLDPANLEAMAEAARKLAK 337 (348)
T ss_pred H-CCCEEEEec---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC
Confidence 4 599998843 3457999999999999999887777666555443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=5.6e-18 Score=165.61 Aligned_cols=347 Identities=12% Similarity=0.034 Sum_probs=192.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC-CCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP-MPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (456)
++|+|...++-||++|. +|+++|.++|++|+|++...- .+++.+... .+.+..++..... .........+.....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~-~~~~~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEV-LYSMEELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCcc-ccChHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999 999999999999999985521 233321100 2334333322210 000011122233344
Q ss_pred HHHHhhhcCCCCCCCCcEEE-ecCCcccHHH--HHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCC
Q 046077 82 EANLASRSENPDFPAPLCAI-VDFQVGWTKA--IFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPE 158 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI-~D~~~~~~~~--~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~ 158 (456)
..++++. +||+|| .|+.+..... +|+.+|||++.+.+.... ..++.
T Consensus 82 ~~~l~~~-------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w----------------------aw~~~-- 130 (385)
T TIGR00215 82 VQLAKQA-------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW----------------------AWRKW-- 130 (385)
T ss_pred HHHHHhc-------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh----------------------hcCcc--
Confidence 5555555 999998 5664444334 889999999987321000 00000
Q ss_pred CccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCcccccc
Q 046077 159 EMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLPEQHWK 238 (456)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~~~~~~ 238 (456)
+ .+.+.+....++.+|+. +... +.+ .+.+..++|.-+.+..
T Consensus 131 ----~----------------------------~r~l~~~~d~v~~~~~~-e~~~---~~~-~g~~~~~vGnPv~~~~-- 171 (385)
T TIGR00215 131 ----R----------------------------AKKIEKATDFLLAILPF-EKAF---YQK-KNVPCRFVGHPLLDAI-- 171 (385)
T ss_pred ----h----------------------------HHHHHHHHhHhhccCCC-cHHH---HHh-cCCCEEEECCchhhhc--
Confidence 0 01122122222333322 2222 222 2345667873322110
Q ss_pred ccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHh---C--CCCEEEEEcCCC
Q 046077 239 STSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEE---S--PGPFIWVVQPGS 313 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~ 313 (456)
........+..+-++..+++++|.+..||....-+.....+++++.. . +.++++....+.
T Consensus 172 ---------------~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~ 236 (385)
T TIGR00215 172 ---------------PLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK 236 (385)
T ss_pred ---------------cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch
Confidence 00001223344444445566788888999876423344445544433 2 334555444321
Q ss_pred CCcCcchhhhh---hC-CCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeecc----CCcc---------
Q 046077 314 EEYMPHDLDNR---VS-NRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW----PIRG--------- 376 (456)
Q Consensus 314 ~~~~~~~~~~~---~~-~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~----P~~~--------- 376 (456)
. .+.+++. .. ...+.+..+ +...++ ..+|++|+.+|..|+ |++++|+|+|++ |+..
T Consensus 237 ~---~~~~~~~~~~~~~~~~v~~~~~-~~~~~l--~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~ 309 (385)
T TIGR00215 237 R---RLQFEQIKAEYGPDLQLHLIDG-DARKAM--FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKT 309 (385)
T ss_pred h---HHHHHHHHHHhCCCCcEEEECc-hHHHHH--HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcC
Confidence 1 1122211 11 122333322 233466 566799999999998 999999999999 7632
Q ss_pred chhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Q 046077 377 DQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE----EMKTRAAILQVKFEQGF--PASSVAALNAFSD 449 (456)
Q Consensus 377 dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~ 449 (456)
.|..|+..+.++ ++...+- ....+++.|.+.+.++++|+ +++++.++--+++++.. ++.+.++++.+++
T Consensus 310 ~~~~~~nil~~~-~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 310 DYISLPNILANR-LLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred CeeeccHHhcCC-ccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 378899999955 7776663 35789999999999999998 66655555544444432 2455666655654
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.75 E-value=4.4e-16 Score=153.01 Aligned_cols=173 Identities=13% Similarity=0.148 Sum_probs=117.1
Q ss_pred HHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhC--CCCeEEecccCHH
Q 046077 263 VIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVS--NRGLIIHAWAPQA 339 (456)
Q Consensus 263 ~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~vp~~ 339 (456)
..+-+...++++++++..|+.+... .+..+++++.+. +.++++++|.+.. +.+.+..... +.++.+.+|+++.
T Consensus 192 ~~~~~~l~~~~~~il~~~G~~~~~k--~~~~li~~l~~~~~~~~viv~G~~~~--~~~~l~~~~~~~~~~v~~~g~~~~~ 267 (380)
T PRK13609 192 IYNKYQLCPNKKILLIMAGAHGVLG--NVKELCQSLMSVPDLQVVVVCGKNEA--LKQSLEDLQETNPDALKVFGYVENI 267 (380)
T ss_pred HHHHcCCCCCCcEEEEEcCCCCCCc--CHHHHHHHHhhCCCcEEEEEeCCCHH--HHHHHHHHHhcCCCcEEEEechhhH
Confidence 3333344445668888888886532 345566666544 5677777664311 1122222221 2479999999875
Q ss_pred -HhhcccCcceEEecCCchhHHHHHHhCCCeecc-CCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 340 -LILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW-PIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 340 -~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~-P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
+++. .++++|+.+|..|+.|++++|+|+|+. |..++|..|+..+++. |+|+.. .+.+++.++|.++++
T Consensus 268 ~~l~~--~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 268 DELFR--VTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALLQ 337 (380)
T ss_pred HHHHH--hccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHHC
Confidence 5774 555999999999999999999999985 7778888999988844 888765 267899999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 418 DEEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 418 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
|++.++++++-+.++... .++.+.++.+++.+
T Consensus 338 ~~~~~~~m~~~~~~~~~~--~s~~~i~~~i~~~~ 369 (380)
T PRK13609 338 DDMKLLQMKEAMKSLYLP--EPADHIVDDILAEN 369 (380)
T ss_pred CHHHHHHHHHHHHHhCCC--chHHHHHHHHHHhh
Confidence 988877766655554443 45555555554433
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=2.7e-15 Score=139.98 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=76.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhhh-CCCCeEEecccCHH-HhhcccCcce
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNRV-SNRGLIIHAWAPQA-LILNHISTGG 349 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~vp~~-~~l~h~~~~~ 349 (456)
+.|+|+||...... ....++++|... +.++.+++|.+.. ..+.+.... ..+|+.+..|++++ ++| +.+|+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--~~~~l~~~~~~~~~i~~~~~~~~m~~lm--~~aDl 244 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--NLDELKKFAKEYPNIILFIDVENMAELM--NEADL 244 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--CHHHHHHHHHhCCCEEEEeCHHHHHHHH--HHCCE
Confidence 47888888554432 344566666553 5678888887642 112333322 24589999999987 567 56679
Q ss_pred EEecCCchhHHHHHHhCCCeeccCCccchhhHHHH
Q 046077 350 FLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKL 384 (456)
Q Consensus 350 ~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~ 384 (456)
+||+|| +|++|++++|+|+|++|+..+|..||+.
T Consensus 245 ~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 38
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.69 E-value=4.3e-15 Score=145.42 Aligned_cols=324 Identities=14% Similarity=0.065 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHh--CCCEEE---EEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHH-HH------HHH
Q 046077 17 QPCIELCKNFSS--RNYHTT---LIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAK-DL------EAN 84 (456)
Q Consensus 17 ~P~l~LA~~L~~--~Gh~Vt---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~l 84 (456)
.=.++||++|.+ .|++|. |++.... +++......+ .+..+|.+................ .+ ..+
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~---~e~~~ip~~g-~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~~ 86 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRA---YQNLGIPIIG-PTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWRA 86 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHH---HhhCCCceeC-CCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 446789999998 699999 9998843 2332111113 666677666553333232222222 11 222
Q ss_pred HhhhcCCCCCCCCcEEE--ecCCcccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccC----CCCCC
Q 046077 85 LASRSENPDFPAPLCAI--VDFQVGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLI----PGLPE 158 (456)
Q Consensus 85 l~~~~~~~~~~~pD~vI--~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----pgl~~ 158 (456)
++++.+ +||+|| +|+. ...+|+.+|||++++.+. +.+.+ ++.+.
T Consensus 87 ~~~~~~-----~p~~v~~~Gg~v---~~~aA~~~~~p~~~~~~~----------------------esn~~~~~~~~~~~ 136 (396)
T TIGR03492 87 LRKWAK-----KGDLIVAVGDIV---PLLFAWLSGKPYAFVGTA----------------------KSDYYWESGPRRSP 136 (396)
T ss_pred HHHHhh-----cCCEEEEECcHH---HHHHHHHcCCCceEEEee----------------------ccceeecCCCCCcc
Confidence 333311 889987 5544 888999999999995332 11222 11110
Q ss_pred CccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeec-ccCccccc
Q 046077 159 EMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVG-LLLPEQHW 237 (456)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vG-p~~~~~~~ 237 (456)
. --+..++.... . .+ .....+.+....+..++ ....+++.+ .+.++.++| |+....
T Consensus 137 ~--~~~~~~~G~~~------------~-p~-e~n~l~~~~a~~v~~~~----~~t~~~l~~-~g~k~~~vGnPv~d~l-- 193 (396)
T TIGR03492 137 S--DEYHRLEGSLY------------L-PW-ERWLMRSRRCLAVFVRD----RLTARDLRR-QGVRASYLGNPMMDGL-- 193 (396)
T ss_pred c--hhhhccCCCcc------------C-HH-HHHHhhchhhCEEeCCC----HHHHHHHHH-CCCeEEEeCcCHHhcC--
Confidence 0 00000000000 0 00 01122222222233332 223334433 234789999 444321
Q ss_pred cccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC----CCCEEEEEcCCC
Q 046077 238 KSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES----PGPFIWVVQPGS 313 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~ 313 (456)
. .... . +..++++++.|-.||........+..++++++.. +..+++.+.++.
T Consensus 194 -----------------~-~~~~-~-----~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~ 249 (396)
T TIGR03492 194 -----------------E-PPER-K-----PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL 249 (396)
T ss_pred -----------------c-cccc-c-----ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 0 0000 0 1123456899999998664433444455555443 567777774332
Q ss_pred CCcCcchhhhhhC------------------CCCeEEecccCH-HHhhcccCcceEEecCCchhHHHHHHhCCCeeccCC
Q 046077 314 EEYMPHDLDNRVS------------------NRGLIIHAWAPQ-ALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPI 374 (456)
Q Consensus 314 ~~~~~~~~~~~~~------------------~~~v~~~~~vp~-~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~ 374 (456)
. .+.+..... ..++.+..|..+ ..++ ..++++|+.+|..| .|+...|+|+|++|+
T Consensus 250 ~---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 250 S---LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPG 323 (396)
T ss_pred C---HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeC
Confidence 1 011211111 123555555544 3566 55569999999877 999999999999999
Q ss_pred ccchhhHHHHHHHH---hccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHH-HHHHHHH
Q 046077 375 RGDQYFNAKLVVNY---IKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAA-ILQVKFE 433 (456)
Q Consensus 375 ~~dQ~~na~~~~~~---~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~-~l~~~~~ 433 (456)
..+|. ||..+++. .|.++.+. ..+.+.|.+++.++++|++.++++. +.++++.
T Consensus 324 ~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg 380 (396)
T TIGR03492 324 KGPQF-TYGFAEAQSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCRRNGQERMG 380 (396)
T ss_pred CCCHH-HHHHHHhhHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcC
Confidence 88886 99877732 26676663 3456999999999999988776666 3334443
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=5.4e-14 Score=138.31 Aligned_cols=169 Identities=12% Similarity=0.142 Sum_probs=117.1
Q ss_pred hcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCcCcchhhhhh-CCCCeEEecccCHH-Hhh
Q 046077 267 LDSKPRGSVLYVAFGSEVGPTREEYRELAGALEE--SPGPFIWVVQPGSEEYMPHDLDNRV-SNRGLIIHAWAPQA-LIL 342 (456)
Q Consensus 267 l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~vp~~-~~l 342 (456)
++..+++++|+++.|+.+.. ..+..+++++.+ .+.++++++|.+. .+-+.+.... ...++.+.+|+++. +++
T Consensus 196 ~~l~~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~--~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 196 NNLDPDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK--ELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred cCCCCCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH--HHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 34444567889999998732 334444444322 2456767766431 1112222222 23578899999766 466
Q ss_pred cccCcceEEecCCchhHHHHHHhCCCeecc-CCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 343 NHISTGGFLSHCGWNSTMEAIVHGVPFLAW-PIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 343 ~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~-P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
..+|++|+.+|..|+.|++++|+|+|+. |..++|..|+..+++. |+|+.. -+.+++.++|.++++|++.
T Consensus 272 --~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~-------~~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 --ASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIA-------DTPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred --HhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEe-------CCHHHHHHHHHHHhcCHHH
Confidence 5667999999999999999999999998 7878888999999955 999876 2788999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 422 KTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 422 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
++++++-+.+.... .+....++.+++.+
T Consensus 342 ~~~m~~~~~~~~~~--~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 LTNMISTMEQDKIK--YATQTICRDLLDLI 369 (391)
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHh
Confidence 77666665555443 45555555555544
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=1e-15 Score=150.42 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=173.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC-CCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP-MPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (456)
|+|+|+..+.-||++|.+ +++.|.++++++.+++... ..+++.... ..+.++.++..... ..............+
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 77 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG--PRMQAAGCE-SLFDMEELAVMGLVEVLPRLPRLLKIRRRL 77 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc--HHHHhCCCc-cccCHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 9999999877777765322 112222100 12333333322110 000001122244456
Q ss_pred HHHHhhhcCCCCCCCCcEEEe-cCCcccH--HHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCC
Q 046077 82 EANLASRSENPDFPAPLCAIV-DFQVGWT--KAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPE 158 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~-D~~~~~~--~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~ 158 (456)
+.++++. +||+|++ ++...+. ...|+.+|||++.+...... .+.++..
T Consensus 78 ~~~l~~~-------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~---------------------~~~~~~~- 128 (380)
T PRK00025 78 KRRLLAE-------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW---------------------AWRQGRA- 128 (380)
T ss_pred HHHHHHc-------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh---------------------hcCchHH-
Confidence 6667766 9999875 4322344 33477889999875211000 0000000
Q ss_pred CccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCCCEeeecccCcccccc
Q 046077 159 EMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGIPAWGVGLLLPEQHWK 238 (456)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~v~~vGp~~~~~~~~ 238 (456)
......++.++..+ +. +. +++.+ .+.++.++|--..+..
T Consensus 129 ---------------------------------~~~~~~~d~i~~~~-~~-~~---~~~~~-~g~~~~~~G~p~~~~~-- 167 (380)
T PRK00025 129 ---------------------------------FKIAKATDHVLALF-PF-EA---AFYDK-LGVPVTFVGHPLADAI-- 167 (380)
T ss_pred ---------------------------------HHHHHHHhhheeCC-cc-CH---HHHHh-cCCCeEEECcCHHHhc--
Confidence 01111223333322 21 11 12222 2334677773221100
Q ss_pred ccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHh---C--CCCEEEEEcCCC
Q 046077 239 STSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEE---S--PGPFIWVVQPGS 313 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~ 313 (456)
.......+..+.+...+++++|++..||...........++++++. . +.+++++.+.+.
T Consensus 168 ----------------~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~ 231 (380)
T PRK00025 168 ----------------PLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK 231 (380)
T ss_pred ----------------ccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh
Confidence 0001123344444444455677777787654322223334444432 2 345666654221
Q ss_pred CCcCcchhhhhhCC---CCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCcc--------chhhH-
Q 046077 314 EEYMPHDLDNRVSN---RGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRG--------DQYFN- 381 (456)
Q Consensus 314 ~~~~~~~~~~~~~~---~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~--------dQ~~n- 381 (456)
..+.+.+.... -++.+.+ -.-..++ ..+|++|+.+|.+++ |++++|+|+|++|-.. +|..|
T Consensus 232 ---~~~~~~~~~~~~~~~~v~~~~-~~~~~~~--~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~ 304 (380)
T PRK00025 232 ---RREQIEEALAEYAGLEVTLLD-GQKREAM--AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVP 304 (380)
T ss_pred ---hHHHHHHHHhhcCCCCeEEEc-ccHHHHH--HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCC
Confidence 11222222211 1233322 1234456 566799999999888 9999999999995322 22222
Q ss_pred ----HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHh
Q 046077 382 ----AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQG-FPASSVAALNAFSDFIS 452 (456)
Q Consensus 382 ----a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~~~~~l~ 452 (456)
+..+.+. +++..+. ....+++.|.+++.++++|++.++++.+-.+.+.+. .++.+.+.++.+.+.+.
T Consensus 305 ~~~l~~~~~~~-~~~~~~~---~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 305 YVSLPNLLAGR-ELVPELL---QEEATPEKLARALLPLLADGARRQALLEGFTELHQQLRCGADERAAQAVLELLK 376 (380)
T ss_pred eeehHHHhcCC-Ccchhhc---CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 1222211 2222221 245688999999999999998776555544333322 12445555555555443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.64 E-value=1e-17 Score=144.60 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=98.0
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccC-HHHhhcccCcceE
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAP-QALILNHISTGGF 350 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp-~~~~l~h~~~~~~ 350 (456)
+|+|++||.+... .+.+..++..+... ..++++++|..........+.. ...++.+.+|++ ..+++ ..+|++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~--~~~~v~~~~~~~~m~~~m--~~aDlv 76 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVEN--FNPNVKVFGFVDNMAELM--AAADLV 76 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCC--TTCCCEEECSSSSHHHHH--HHHSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhc--cCCcEEEEechhhHHHHH--HHcCEE
Confidence 5899999887532 22233344444432 5788988987632111111111 115799999999 66677 455699
Q ss_pred EecCCchhHHHHHHhCCCeeccCCcc----chhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 046077 351 LSHCGWNSTMEAIVHGVPFLAWPIRG----DQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTR 424 (456)
Q Consensus 351 I~hgG~gt~~e~l~~GvP~v~~P~~~----dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 424 (456)
|||||.||++|++++|+|+|++|... ||..||..+++ .|+|+.+.. ...+.+.|.++|.++++++..+..
T Consensus 77 Is~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~~~~ 150 (167)
T PF04101_consen 77 ISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEKLKE 150 (167)
T ss_dssp EECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-SHH
T ss_pred EeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999988 99999999995 499998863 456789999999999998775433
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.64 E-value=4.9e-13 Score=131.32 Aligned_cols=178 Identities=14% Similarity=0.148 Sum_probs=117.6
Q ss_pred hHHHHHhcCCCCCceEEEecCCCCCCCHH-HHHHHHHHHH-----hCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEec
Q 046077 261 EEVIQWLDSKPRGSVLYVAFGSEVGPTRE-EYRELAGALE-----ESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHA 334 (456)
Q Consensus 261 ~~~~~~l~~~~~~~vv~v~~GS~~~~~~~-~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (456)
.++.+-++..+++++|++..|+.+..... .+..+...+. ..+.++++++|.+.. +-+.+.......++.+.+
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--~~~~L~~~~~~~~v~~~G 271 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--LQSKLESRDWKIPVKVRG 271 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--HHHHHHhhcccCCeEEEe
Confidence 34555555555677888888877654423 2333333221 234566777775421 112222222234688999
Q ss_pred ccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchh-hHHHHHHHHhccEEEEecCCCCcccHHHHHHHHH
Q 046077 335 WAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQY-FNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIE 413 (456)
Q Consensus 335 ~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~-~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 413 (456)
|+++..-+. ..+|++|+.+|.+|++||+++|+|+|+.+....|+ .|+..+.+. |.|+.+ -++++|.++|.
T Consensus 272 ~~~~~~~l~-~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~ 342 (382)
T PLN02605 272 FVTNMEEWM-GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVA 342 (382)
T ss_pred ccccHHHHH-HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHH
Confidence 999765332 56679999999999999999999999997655554 799989854 999765 37899999999
Q ss_pred HHhCC-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 414 RLMSD-EEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 414 ~~l~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
++++| ++.++++++.+++.... .++.+.++.+.+.+
T Consensus 343 ~ll~~~~~~~~~m~~~~~~~~~~--~a~~~i~~~l~~~~ 379 (382)
T PLN02605 343 EWFGDKSDELEAMSENALKLARP--EAVFDIVHDLHELV 379 (382)
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHh
Confidence 99988 77777766666555543 45555555555544
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.52 E-value=2.6e-11 Score=117.79 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=101.3
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCcc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHISTG 348 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~~ 348 (456)
+.+++..|+..... .+.+.+++..+... +..+ +++|.+.. .+.+. ....|+.+.+|+++.+ ++ ..++
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l-~i~G~~~~---~~~~~--~~~~~v~~~g~~~~~~~~~~~--~~~d 268 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRL-VIVGDGPA---RARLE--ARYPNVHFLGFLDGEELAAAY--ASAD 268 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceE-EEEeCCch---HHHHh--ccCCcEEEEeccCHHHHHHHH--HhCC
Confidence 45667778765433 45555555555443 3444 34444321 11221 2356899999998765 56 4556
Q ss_pred eEEecCCc----hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 046077 349 GFLSHCGW----NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTR 424 (456)
Q Consensus 349 ~~I~hgG~----gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 424 (456)
++|+.+.. +++.|++++|+|+|+.+..+ +...+++ .+.|.... ..+.+++.++|.++++|++.+++
T Consensus 269 ~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~ 338 (364)
T cd03814 269 VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVE-----PGDAEAFAAALAALLADPELRRR 338 (364)
T ss_pred EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcC-----CCCHHHHHHHHHHHHcCHHHHHH
Confidence 88877653 78999999999999987654 4445553 37888773 34778899999999999887777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH
Q 046077 425 AAILQVKFEQGFPASSVAALNAFSDF 450 (456)
Q Consensus 425 a~~l~~~~~~~~~~~~~~~~~~~~~~ 450 (456)
+.+-+.+..+. -+....++++++.
T Consensus 339 ~~~~~~~~~~~--~~~~~~~~~~~~~ 362 (364)
T cd03814 339 MAARARAEAER--RSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHhh--cCHHHHHHHHHHh
Confidence 66665555433 3555555555543
No 44
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.48 E-value=1.4e-11 Score=112.42 Aligned_cols=137 Identities=17% Similarity=0.208 Sum_probs=99.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCC--EEEEEcCCCCCcCcchhhhh-----hCCCCeEEecccCHHH-hh
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEE-SPGP--FIWVVQPGSEEYMPHDLDNR-----VSNRGLIIHAWAPQAL-IL 342 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~vp~~~-~l 342 (456)
++.-|+|+-|.-.. ..+.+...++|-.. .+.+ .++++|+. +|+.-.++ .+.+++.+..|-.+.. ++
T Consensus 218 E~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~----MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll 292 (400)
T COG4671 218 EGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPF----MPEAQRQKLLASAPKRPHISIFEFRNDFESLL 292 (400)
T ss_pred ccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCC----CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHH
Confidence 33467777664322 24555555555443 3444 66677753 56433222 2347899999987665 55
Q ss_pred cccCcceEEecCCchhHHHHHHhCCCeeccCCc---cchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH
Q 046077 343 NHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIR---GDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 343 ~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~---~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
..++.+|+-||.||+.|-|.+|||.+++|+. .+|-.-|.|++ ++|+.-.+-+ ..+++..++++|...++-|
T Consensus 293 --~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~-~LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 293 --AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE-ELGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred --HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH-hcCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 4456999999999999999999999999984 48888899999 7898888864 5789999999999998743
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.45 E-value=1.6e-10 Score=116.60 Aligned_cols=141 Identities=19% Similarity=0.190 Sum_probs=91.0
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCcceE
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHISTGGF 350 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~~~~ 350 (456)
.+++..|+.... ..+..++++++.. +.+++ ++|.+. ..+.++......++.+.+|+++.+ ++ ..+|++
T Consensus 264 ~~i~~vGrl~~~--K~~~~li~a~~~~~~~~l~-ivG~G~---~~~~l~~~~~~~~V~f~G~v~~~ev~~~~--~~aDv~ 335 (465)
T PLN02871 264 PLIVYVGRLGAE--KNLDFLKRVMERLPGARLA-FVGDGP---YREELEKMFAGTPTVFTGMLQGDELSQAY--ASGDVF 335 (465)
T ss_pred eEEEEeCCCchh--hhHHHHHHHHHhCCCcEEE-EEeCCh---HHHHHHHHhccCCeEEeccCCHHHHHHHH--HHCCEE
Confidence 455667887643 3455566776665 45544 555432 123444444456799999998654 55 555688
Q ss_pred EecCCc----hhHHHHHHhCCCeeccCCccchhhHHHHHHH--HhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 046077 351 LSHCGW----NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVN--YIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTR 424 (456)
Q Consensus 351 I~hgG~----gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~--~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 424 (456)
|.-+.. .++.|++++|+|+|+....+ ....+++ .-+.|..+.. -+.+++.++|.++++|++.+++
T Consensus 336 V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~ 406 (465)
T PLN02871 336 VMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP-----GDVDDCVEKLETLLADPELRER 406 (465)
T ss_pred EECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC-----CCHHHHHHHHHHHHhCHHHHHH
Confidence 866543 46889999999999876542 2233442 1377888742 4789999999999999876665
Q ss_pred HHHHHHHH
Q 046077 425 AAILQVKF 432 (456)
Q Consensus 425 a~~l~~~~ 432 (456)
+.+.+++.
T Consensus 407 ~~~~a~~~ 414 (465)
T PLN02871 407 MGAAAREE 414 (465)
T ss_pred HHHHHHHH
Confidence 55554443
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=3.2e-11 Score=106.76 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=106.5
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEec
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSH 353 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~h 353 (456)
.-|+|++|.. ......-+++..|....+.+-+++|... ..++...+..-..+++........+.-|+ -.+++.|+-
T Consensus 159 r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~-p~l~~l~k~~~~~~~i~~~~~~~dma~LM-ke~d~aI~A 234 (318)
T COG3980 159 RDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSN-PTLKNLRKRAEKYPNINLYIDTNDMAELM-KEADLAISA 234 (318)
T ss_pred heEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCC-cchhHHHHHHhhCCCeeeEecchhHHHHH-Hhcchheec
Confidence 3588888743 2234555688888887777777777332 22222222222346787777777665443 455699998
Q ss_pred CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 046077 354 CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKF 432 (456)
Q Consensus 354 gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 432 (456)
+|. |++|++..|+|.+++|+...|.-.|+..+ .+|+-..+.. .++.+.....+.++++|...|++...-.+.+
T Consensus 235 aGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~-~lg~~~~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 235 AGS-TLYEALLLGVPSLVLPLAENQIATAKEFE-ALGIIKQLGY----HLKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred cch-HHHHHHHhcCCceEEeeeccHHHHHHHHH-hcCchhhccC----CCchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 875 89999999999999999999999999999 5687776632 3788888888889999998888766554443
No 47
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=7.4e-14 Score=116.62 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=82.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC-CCCCC-CCchH------HHH
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS-GRPMP-PSDPL------SQQ 76 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~------~~~ 76 (456)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. +++|..++.+ ..... ..... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~-----Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA-----GLEFVPIPGDSRLPRSLEPLANLRRLARLIR 75 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT-----T-EEEESSSCGGGGHHHHHHHHHHCHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc-----CceEEEecCCcCcCcccchhhhhhhHHHHhh
Confidence 78999999999999999999999999999999999999999877 8999999877 21100 00000 001
Q ss_pred HHHHHHHHHhhhc-----CCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHH
Q 046077 77 AAKDLEANLASRS-----ENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGAC 129 (456)
Q Consensus 77 ~~~~~~~ll~~~~-----~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 129 (456)
......+.+++.. ...+...+|+++.+.....+..+||++|||++.....+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 76 GLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1112222222211 1222236788888888888999999999999998666543
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.38 E-value=1.6e-09 Score=106.04 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=94.2
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHh-CCCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCHH-HhhcccCcceE
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEE-SPGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQA-LILNHISTGGF 350 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~~-~~l~h~~~~~~ 350 (456)
.+++..|...... .+.+.+.+..+.. .+.+++ ++|.+.. +.+.+.........++.+.++.++. .++ ..++++
T Consensus 198 ~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~-i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d~~ 274 (371)
T cd04962 198 KVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLL-LVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELL--SIADLF 274 (371)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHhcCCceEE-EEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHH--HhcCEE
Confidence 5566777766543 3333343333333 244544 4444321 1111111111123568888888754 456 455577
Q ss_pred EecC----CchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHH
Q 046077 351 LSHC----GWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAA 426 (456)
Q Consensus 351 I~hg----G~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 426 (456)
|.-+ ...++.||+++|+|+|+.... ..+..+++. ..|..+. .-+.+++.+++.++++|++.+++++
T Consensus 275 v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~ 344 (371)
T cd04962 275 LLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVD-----VGDVEAMAEYALSLLEDDELWQEFS 344 (371)
T ss_pred EeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcC-----CCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 7443 345999999999999986543 345555532 4676663 2478999999999999987666655
Q ss_pred HHHHHH-HhcCCCChHHHHHHHHHHHh
Q 046077 427 ILQVKF-EQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 427 ~l~~~~-~~~~~~~~~~~~~~~~~~l~ 452 (456)
+-+.+. .+. -+....++++.+..+
T Consensus 345 ~~~~~~~~~~--fs~~~~~~~~~~~y~ 369 (371)
T cd04962 345 RAARNRAAER--FDSERIVPQYEALYR 369 (371)
T ss_pred HHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 544443 332 355566666655543
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.29 E-value=7.9e-09 Score=99.67 Aligned_cols=326 Identities=15% Similarity=0.065 Sum_probs=172.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCC-CCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSA-IPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+|++++....|+..-...|++.|.+.||+|++++....... ... .+++++.++...... ...........+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 73 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-----LGVKVIPIPLDRRGI--NPFKDLKALLRLY 73 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-----CCceEEecccccccc--ChHhHHHHHHHHH
Confidence 47777777788999999999999999999999997754432 222 267777666543211 1111112233455
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCc--ccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCCCc
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQV--GWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPEEM 160 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~~~ 160 (456)
.++++. +||+|++.... ..+..+++..+.|.+.+........ ....
T Consensus 74 ~~~~~~-------~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~-- 121 (359)
T cd03808 74 RLLRKE-------RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV-----------------------FTSG-- 121 (359)
T ss_pred HHHHhc-------CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-----------------------hccc--
Confidence 555555 99999877432 2334455546666665432211000 0000
Q ss_pred cCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcC----CCEeeecccCcccc
Q 046077 161 ALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIG----IPAWGVGLLLPEQH 236 (456)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~----~~v~~vGp~~~~~~ 236 (456)
.....+..... ......++.++..+ ....+.+.+... ..+..++......
T Consensus 122 -~~~~~~~~~~~-------------------~~~~~~~d~ii~~s-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (359)
T cd03808 122 -GLKRRLYLLLE-------------------RLALRFTDKVIFQN-----EDDRDLALKLGIIKKKKTVLIPGSGVDLD- 175 (359)
T ss_pred -hhHHHHHHHHH-------------------HHHHhhccEEEEcC-----HHHHHHHHHhcCCCcCceEEecCCCCChh-
Confidence 00000000000 01123445566665 333333333221 1222222211110
Q ss_pred ccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCC
Q 046077 237 WKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGS 313 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~ 313 (456)
........ ..+++.+++..|+..... .+.+.+++..+.+. +.+++ ++|.+.
T Consensus 176 ------------------~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~-i~G~~~ 229 (359)
T cd03808 176 ------------------RFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL-LVGDGD 229 (359)
T ss_pred ------------------hcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE-EEcCCC
Confidence 00000000 123447788888876544 45555555555543 34443 344432
Q ss_pred CCcCcch--hhhhhCCCCeEEecccCHH-HhhcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHH
Q 046077 314 EEYMPHD--LDNRVSNRGLIIHAWAPQA-LILNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVV 386 (456)
Q Consensus 314 ~~~~~~~--~~~~~~~~~v~~~~~vp~~-~~l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~ 386 (456)
....... ........++.+.++..+. .++. .++++|+.+. .+++.||+++|+|+|+.+..+ +...++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~ 303 (359)
T cd03808 230 EENPAAILEIEKLGLEGRVEFLGFRDDVPELLA--AADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVI 303 (359)
T ss_pred cchhhHHHHHHhcCCcceEEEeeccccHHHHHH--hccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhh
Confidence 2111111 1222234578888875543 4664 4457876554 578999999999999976543 334455
Q ss_pred HHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 046077 387 NYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKF 432 (456)
Q Consensus 387 ~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 432 (456)
..+.|..+. .-+.+++.++|.++++|++.++.+.+.+.+.
T Consensus 304 -~~~~g~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 304 -DGVNGFLVP-----PGDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred -cCcceEEEC-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 336787773 3478999999999999987666555544444
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.28 E-value=1.2e-08 Score=100.85 Aligned_cols=336 Identities=14% Similarity=0.095 Sum_probs=168.9
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCC---CchHHHHHHHHHHHHHhhhc
Q 046077 13 QGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPP---SDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 13 ~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~ 89 (456)
-|.-..++.|++.|+++||+|++++.......... .....++.++.++........ ...........+...++...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI-VELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREG 99 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc-cccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcC
Confidence 36777899999999999999999986533222110 112236777776653321111 11111122233333333321
Q ss_pred CCCCCCCCcEEEecCC--cccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCCCccCCcccc
Q 046077 90 ENPDFPAPLCAIVDFQ--VGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPEEMALTYSDI 167 (456)
Q Consensus 90 ~~~~~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~~~ 167 (456)
. +||+|++... ...+..+++.+|+|++........ ....... ....
T Consensus 100 -~----~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~---------------------~~~~~~~----~~~~-- 147 (398)
T cd03800 100 -G----RPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA---------------------VKRRHLG----AADT-- 147 (398)
T ss_pred -C----CccEEEEecCccchHHHHHHhhcCCceEEEeecccc---------------------cCCcccc----cccc--
Confidence 1 8999997743 345667889999998864211000 0000000 0000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcC---CCEeeecccCcccccccccccc
Q 046077 168 RRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIG---IPAWGVGLLLPEQHWKSTSSLV 244 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~---~~v~~vGp~~~~~~~~~~~~~~ 244 (456)
.. ...........+..++.++..+ ....+....... .++..+.+-.....+
T Consensus 148 ---~~-----------~~~~~~~~~~~~~~ad~ii~~s-----~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~------- 201 (398)
T cd03800 148 ---YE-----------PARRIEAEERLLRAADRVIAST-----PQEAEELYSLYGAYPRRIRVVPPGVDLERF------- 201 (398)
T ss_pred ---cc-----------hhhhhhHHHHHHhhCCEEEEcC-----HHHHHHHHHHccccccccEEECCCCCccce-------
Confidence 00 0000000012344566666666 222222222221 124444433321100
Q ss_pred ccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcc--
Q 046077 245 RHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPH-- 319 (456)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~-- 319 (456)
.+. .........+....+ ..+++..|+..... .+.+.+.+..+.+. +.+++++ |.+.....+.
T Consensus 202 ---------~~~-~~~~~~~~~~~~~~~-~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~-G~~~~~~~~~~~ 269 (398)
T cd03800 202 ---------TPY-GRAEARRARLLRDPD-KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIV-GGPRDDILAMDE 269 (398)
T ss_pred ---------ecc-cchhhHHHhhccCCC-CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEE-ECCCCcchhhhh
Confidence 000 011110112222222 35667778876543 34444444444432 3454444 4332211111
Q ss_pred -h---h-hhhhCCCCeEEecccCHHHh---hcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHH
Q 046077 320 -D---L-DNRVSNRGLIIHAWAPQALI---LNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVN 387 (456)
Q Consensus 320 -~---~-~~~~~~~~v~~~~~vp~~~~---l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~ 387 (456)
. + .......++.+.+|+|+.++ +. .++++++.+- ..++.||+++|+|+|+....+ ....++
T Consensus 270 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~- 342 (398)
T cd03800 270 EELRELARELGVIDRVDFPGRVSREDLPALYR--AADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVV- 342 (398)
T ss_pred HHHHHHHHhcCCCceEEEeccCCHHHHHHHHH--hCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHcc-
Confidence 0 1 11122367999999997653 64 4558875532 368999999999999876543 444566
Q ss_pred HhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 046077 388 YIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVK 431 (456)
Q Consensus 388 ~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 431 (456)
.-+.|..+. .-+.+++.++|.++++|++.++++.+-+.+
T Consensus 343 ~~~~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 343 DGVTGLLVD-----PRDPEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred CCCCeEEeC-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 436888873 247899999999999988766555544433
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=6.4e-09 Score=100.65 Aligned_cols=143 Identities=20% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCc
Q 046077 272 RGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHIST 347 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~ 347 (456)
+.+.+++..|+..... .+.+.+++..+.+.+.+++ ++|.+.... ..........++.+.+++++.+ ++. .+
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~-i~G~~~~~~--~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~a 263 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELV-IVGNGLELE--EESYELEGDPRVEFLGAYPQEEIDDFYA--EI 263 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEE-EEcCchhhh--HHHHhhcCCCeEEEeCCCCHHHHHHHHH--hC
Confidence 3446777788876544 3444444444443345544 444432110 1111112346799999997554 464 44
Q ss_pred ceEEec----CCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHH
Q 046077 348 GGFLSH----CGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMK 422 (456)
Q Consensus 348 ~~~I~h----gG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 422 (456)
+++|+. .|. .++.|++++|+|+|+.+.. .+...+++. +.|..+. .-+.+++.+++.++++|++.+
T Consensus 264 d~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l~~~~~~~ 333 (359)
T cd03823 264 DVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFP-----PGDAEDLAAALERLIDDPDLL 333 (359)
T ss_pred CEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEEC-----CCCHHHHHHHHHHHHhChHHH
Confidence 577743 333 4789999999999987654 345556632 5788774 246899999999999988766
Q ss_pred HHHHHHH
Q 046077 423 TRAAILQ 429 (456)
Q Consensus 423 ~~a~~l~ 429 (456)
+.+.+-+
T Consensus 334 ~~~~~~~ 340 (359)
T cd03823 334 ERLRAGI 340 (359)
T ss_pred HHHHHhH
Confidence 6655443
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.28 E-value=2.7e-09 Score=103.77 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=85.3
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhh----hCCCCeEEecccCHHH---hhc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNR----VSNRGLIIHAWAPQAL---ILN 343 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~vp~~~---~l~ 343 (456)
+.+++..|+..... .+.+..++..+.+. +.++++. |.+.. .+.+.+. ....++.+.+++|+.+ ++.
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~-G~~~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 277 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIV-GDGPE---REELEELARELGLADRVIFTGFVPREELPDYYK 277 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEE-eCCch---HHHHHHHHHHcCCCCcEEEeccCChHHHHHHHH
Confidence 45667778776544 45555555555543 3444433 33211 1222221 2246899999998765 464
Q ss_pred ccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH
Q 046077 344 HISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 344 h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
. ++++|..+. ..++.|++++|+|+|+.... ..+..+++. +.|..+.. .+. ++.+++.++++++
T Consensus 278 ~--ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-----~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 278 A--ADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADG-ENGFLFPP-----GDE-ALAEALLRLLQDP 344 (374)
T ss_pred H--cCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecC-ceeEEeCC-----CCH-HHHHHHHHHHhCh
Confidence 4 457775443 46899999999999987543 344555533 67877742 122 9999999999988
Q ss_pred HHHHHHHHHHHH
Q 046077 420 EMKTRAAILQVK 431 (456)
Q Consensus 420 ~~~~~a~~l~~~ 431 (456)
+.++...+-++.
T Consensus 345 ~~~~~~~~~~~~ 356 (374)
T cd03817 345 ELRRRLSKNAEE 356 (374)
T ss_pred HHHHHHHHHHHH
Confidence 755444433333
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.27 E-value=4.3e-09 Score=102.84 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred CCceEEEecCCCCCCC-HHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhh---hhCCCCeEEecccCHHH---hhc
Q 046077 272 RGSVLYVAFGSEVGPT-REEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDN---RVSNRGLIIHAWAPQAL---ILN 343 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~vp~~~---~l~ 343 (456)
.++.+++..|+..... .+.+.+++..+... +.+++ ++|.+.. .+.+.+ ....+|+.+.+++++.+ ++.
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 293 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGPE---KEELKELAKALGLDNVTFLGRVPKEELPELLA 293 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCccc---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHH
Confidence 3447777788876544 45555555555444 44443 4444321 122222 22346899999998665 453
Q ss_pred ccCcceEEecCCc---------hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHH
Q 046077 344 HISTGGFLSHCGW---------NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIER 414 (456)
Q Consensus 344 h~~~~~~I~hgG~---------gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 414 (456)
.++++|..+.. +++.||+++|+|+|+.+..+.+... .+. +.|..+. .-+.+++.++|.+
T Consensus 294 --~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~~~-----~~~~~~l~~~i~~ 361 (394)
T cd03794 294 --AADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLVVP-----PGDPEALAAAILE 361 (394)
T ss_pred --hhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceEeC-----CCCHHHHHHHHHH
Confidence 44577754332 3479999999999999877655433 212 6677773 2378999999999
Q ss_pred HhCCHHHHHHHHHHHHHH
Q 046077 415 LMSDEEMKTRAAILQVKF 432 (456)
Q Consensus 415 ~l~~~~~~~~a~~l~~~~ 432 (456)
+++|++.++++.+-+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (394)
T cd03794 362 LLDDPEERAEMGENGRRY 379 (394)
T ss_pred HHhChHHHHHHHHHHHHH
Confidence 999887766665554444
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.26 E-value=1.6e-08 Score=97.72 Aligned_cols=339 Identities=13% Similarity=0.050 Sum_probs=173.5
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCC
Q 046077 13 QGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENP 92 (456)
Q Consensus 13 ~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (456)
-|+-.-+..|++.|.+.||+|++++............. ....... ..................+..+++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 84 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG---GIVVVRP--PPLLRVRRLLLLLLLALRLRRLLRRE---- 84 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec---CcceecC--CcccccchhHHHHHHHHHHHHHhhhc----
Confidence 68899999999999999999999998754332222100 0000000 00000111122223334455555555
Q ss_pred CCCCCcEEEecCCcccHH--HHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCCCccCCccccccc
Q 046077 93 DFPAPLCAIVDFQVGWTK--AIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPEEMALTYSDIRRK 170 (456)
Q Consensus 93 ~~~~pD~vI~D~~~~~~~--~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~ 170 (456)
++|+|+......... ..+...++|++...-........ .... .... .
T Consensus 85 ---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------------------~~~~---~~~~-~--- 133 (374)
T cd03801 85 ---RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPG---------------------NELG---LLLK-L--- 133 (374)
T ss_pred ---CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccc---------------------cchh---HHHH-H---
Confidence 899999775443332 57888999998753221110000 0000 0000 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhhcCC---CEeeecccCccccccccccccccc
Q 046077 171 SSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQIGI---PAWGVGLLLPEQHWKSTSSLVRHC 247 (456)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~---~v~~vGp~~~~~~~~~~~~~~~~~ 247 (456)
...........++.++..+ ....+.+....+. ++..+..-+....+
T Consensus 134 ----------------~~~~~~~~~~~~d~~i~~s-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------- 182 (374)
T cd03801 134 ----------------ARALERRALRRADRIIAVS-----EATREELRELGGVPPEKITVIPNGVDTERF---------- 182 (374)
T ss_pred ----------------HHHHHHHHHHhCCEEEEec-----HHHHHHHHhcCCCCCCcEEEecCccccccc----------
Confidence 0000012234555666665 3444444444332 45544433221100
Q ss_pred hhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhh-
Q 046077 248 EITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDN- 323 (456)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~- 323 (456)
.....+...-... ..++.+++.+|+..... .+.+.+.+..+... +.+++ ++|.+. ....+..
T Consensus 183 ---------~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~-i~G~~~---~~~~~~~~ 248 (374)
T cd03801 183 ---------RPAPRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLV-IVGDGP---LREELEAL 248 (374)
T ss_pred ---------CccchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEE-EEeCcH---HHHHHHHH
Confidence 0000111111111 23335667778766433 33344444444433 23333 344321 1122221
Q ss_pred ---hhCCCCeEEecccCHHH---hhcccCcceEEec----CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEE
Q 046077 324 ---RVSNRGLIIHAWAPQAL---ILNHISTGGFLSH----CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGL 393 (456)
Q Consensus 324 ---~~~~~~v~~~~~vp~~~---~l~h~~~~~~I~h----gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~ 393 (456)
.....++.+.+++++.+ ++. .++++|+- |..+++.||+++|+|+|+.+. ......+++. +.|.
T Consensus 249 ~~~~~~~~~v~~~g~~~~~~~~~~~~--~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~ 321 (374)
T cd03801 249 AAELGLGDRVTFLGFVPDEDLPALYA--AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGL 321 (374)
T ss_pred HHHhCCCcceEEEeccChhhHHHHHH--hcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceE
Confidence 22356899999997543 564 44577743 446789999999999998765 3345555533 6787
Q ss_pred EEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCCChHHHHHHHHHH
Q 046077 394 RVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQV-KFEQGFPASSVAALNAFSDF 450 (456)
Q Consensus 394 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~~~ 450 (456)
.+. ..+.+++.++|.++++|++.++.+.+-+. .+.+. -+-....+++++.
T Consensus 322 ~~~-----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 372 (374)
T cd03801 322 LVP-----PGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEV 372 (374)
T ss_pred EeC-----CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHh
Confidence 773 34689999999999999876655554444 33333 2444555555443
No 55
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.21 E-value=6.8e-10 Score=108.44 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=87.8
Q ss_pred CCceEEEecCCCCCC-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCcCcchhhhh----hC-CCCeEEecccCHHHhhc-
Q 046077 272 RGSVLYVAFGSEVGP-TREEYRELAGALEESPG-PFIWVVQPGSEEYMPHDLDNR----VS-NRGLIIHAWAPQALILN- 343 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~----~~-~~~v~~~~~vp~~~~l~- 343 (456)
+++.|++++|..... ..+.+..+++++..... +++++...+.. ..+.+.+. .. ..++.+.++.++.++..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l 274 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLL 274 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHH
Confidence 455788888877654 25566777777766532 24444432221 11222221 11 35788877665443221
Q ss_pred ccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 046077 344 HISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKT 423 (456)
Q Consensus 344 h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 423 (456)
...++++|+.+| |.+.|++++|+|+|+++.. |. ++.+.+. |+++.+. -+.++|.++|.++++++..++
T Consensus 275 ~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~------~~~~~i~~~i~~ll~~~~~~~ 342 (363)
T cd03786 275 LKNADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG------TDPEAILAAIEKLLSDEFAYS 342 (363)
T ss_pred HHcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC------CCHHHHHHHHHHHhcCchhhh
Confidence 255679999999 7888999999999998643 32 3344424 7776551 258999999999999876665
Q ss_pred HH
Q 046077 424 RA 425 (456)
Q Consensus 424 ~a 425 (456)
++
T Consensus 343 ~~ 344 (363)
T cd03786 343 LM 344 (363)
T ss_pred cC
Confidence 54
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.20 E-value=7.7e-08 Score=95.71 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=95.3
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCcCcchhhhh---hCCCCeEEecccCHHH---hhc
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEES----PGPFIWVVQPGSEEYMPHDLDNR---VSNRGLIIHAWAPQAL---ILN 343 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~vp~~~---~l~ 343 (456)
+.+++..|+..... .+..++++++.. +.+++ ++|.+. ..+.+.+. .+..|+.+.+|+|+.+ +++
T Consensus 229 ~~~i~~~G~l~~~k--g~~~li~a~~~l~~~~~~~l~-ivG~g~---~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~ 302 (412)
T PRK10307 229 KKIVLYSGNIGEKQ--GLELVIDAARRLRDRPDLIFV-ICGQGG---GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLK 302 (412)
T ss_pred CEEEEEcCcccccc--CHHHHHHHHHHhccCCCeEEE-EECCCh---hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHH
Confidence 35666788886533 333344444332 23433 455432 12333322 1224799999998764 565
Q ss_pred ccCcceEEecCCc------hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 344 HISTGGFLSHCGW------NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 344 h~~~~~~I~hgG~------gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.+++.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|+.++ .-+.+++.++|.++++
T Consensus 303 ~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~-----~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 303 MADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVE-----PESVEALVAAIAALAR 372 (412)
T ss_pred hcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeC-----CCCHHHHHHHHHHHHh
Confidence 6665555555432 2368999999999998654421 112222 6788774 3478999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhhc
Q 046077 418 DEEMKTRAAILQVKFE-QGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 418 ~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~ 454 (456)
|++.++++++.+.... +. -+....++++++.+.+.
T Consensus 373 ~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 373 QALLRPKLGTVAREYAERT--LDKENVLRQFIADIRGL 408 (412)
T ss_pred CHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHH
Confidence 8876666555544432 22 25556666666655543
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.16 E-value=1.3e-08 Score=101.60 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred eEEecccCHH-HhhcccCcceEEec-----CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcc
Q 046077 330 LIIHAWAPQA-LILNHISTGGFLSH-----CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETV 403 (456)
Q Consensus 330 v~~~~~vp~~-~~l~h~~~~~~I~h-----gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~ 403 (456)
+.+.+..... .++ ..+|+++.. +|..++.|++++|+|+|..|...++......+.+. |+++.. -
T Consensus 304 v~l~~~~~el~~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~ 373 (425)
T PRK05749 304 VLLGDTMGELGLLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------E 373 (425)
T ss_pred EEEEecHHHHHHHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------C
Confidence 4444433332 455 444564331 34446999999999999999888888888777634 766654 2
Q ss_pred cHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 046077 404 KKGDIAEGIERLMSDEEMKTRAAILQVKFEQ 434 (456)
Q Consensus 404 ~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 434 (456)
+.++|.++|.++++|++.++++.+-+.+...
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 6799999999999999877776666555543
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.16 E-value=6.2e-08 Score=92.95 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=86.6
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCH-HHhhcccCcce
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQ-ALILNHISTGG 349 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~-~~~l~h~~~~~ 349 (456)
..++..|+..... .+.+.+++..+.+. +.+++ ++|.+.. ..+...........++.+.++... ..++. .+++
T Consensus 179 ~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~-i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~ad~ 255 (348)
T cd03820 179 KRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLR-IVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYA--KASI 255 (348)
T ss_pred cEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEE-EEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHH--hCCE
Confidence 4566677765533 44455555555433 33433 3443321 011111111222356777777443 34664 4557
Q ss_pred EEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhc-cEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 046077 350 FLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIK-VGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTR 424 (456)
Q Consensus 350 ~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 424 (456)
+|.-+. .+++.|++++|+|+|+.+..+.+.. +.+. | .|..+. ..+.+++.++|.++++|++.+++
T Consensus 256 ~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~-----~~~~~~~~~~i~~ll~~~~~~~~ 325 (348)
T cd03820 256 FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVP-----NGDVEALAEALLRLMEDEELRKR 325 (348)
T ss_pred EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeC-----CCCHHHHHHHHHHHHcCHHHHHH
Confidence 776653 4689999999999998765544432 2224 4 787773 34679999999999999987776
Q ss_pred HHHHHHHHHh
Q 046077 425 AAILQVKFEQ 434 (456)
Q Consensus 425 a~~l~~~~~~ 434 (456)
+.+-++...+
T Consensus 326 ~~~~~~~~~~ 335 (348)
T cd03820 326 MGANARESAE 335 (348)
T ss_pred HHHHHHHHHH
Confidence 6666544443
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.15 E-value=6.5e-08 Score=93.73 Aligned_cols=342 Identities=14% Similarity=0.076 Sum_probs=173.7
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCC-CeEEEecCCCCCCCCCCchHHHHHHHHHHHHHh--hh
Q 046077 12 WQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYP-RTRTTQITSSGRPMPPSDPLSQQAAKDLEANLA--SR 88 (456)
Q Consensus 12 ~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~ 88 (456)
..|+-.-...+++.|.+.||+|++++...............+ ...........................+..+++ ..
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRF 92 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccC
Confidence 478888899999999999999999997754333222100000 000000000000011112223334445555665 44
Q ss_pred cCCCCCCCCcEEEecCCc---ccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCCCccCCcc
Q 046077 89 SENPDFPAPLCAIVDFQV---GWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPEEMALTYS 165 (456)
Q Consensus 89 ~~~~~~~~pD~vI~D~~~---~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~ 165 (456)
++|+|++.... .....+++..++|++...-..... .... .
T Consensus 93 -------~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------------~~~~---~--- 135 (377)
T cd03798 93 -------RPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN------------------------LLPR---K--- 135 (377)
T ss_pred -------CCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc------------------------ccCc---h---
Confidence 99999877433 234456777889988753211100 0000 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCcccccCCeEEEEcCCccccHHHHHHHHhh--cCCCEeeecccCccccccccccc
Q 046077 166 DIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSIALMFNTCDDLDGLFIKYMADQ--IGIPAWGVGLLLPEQHWKSTSSL 243 (456)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~--~~~~v~~vGp~~~~~~~~~~~~~ 243 (456)
... .......+..++.++..+ ....+.+.+. ...++..++.......+
T Consensus 136 ~~~-------------------~~~~~~~~~~~d~ii~~s-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------ 185 (377)
T cd03798 136 RLL-------------------RALLRRALRRADAVIAVS-----EALADELKALGIDPEKVTVIPNGVDTERF------ 185 (377)
T ss_pred hhH-------------------HHHHHHHHhcCCeEEeCC-----HHHHHHHHHhcCCCCceEEcCCCcCcccC------
Confidence 000 000012334556666665 3444444443 23456665544432110
Q ss_pred cccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEE-cCCCCCcCcchh
Q 046077 244 VRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVV-QPGSEEYMPHDL 321 (456)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~-~~~~~~~~~~~~ 321 (456)
. ....... +-+.. ..++.+++..|+..... .+.+.++++.+.+.+..+.+.+ |.+.. ...+
T Consensus 186 -----------~-~~~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~---~~~~ 248 (377)
T cd03798 186 -----------S-PADRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL---REAL 248 (377)
T ss_pred -----------C-CcchHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc---hHHH
Confidence 0 0001111 11112 22346677788776533 3444455555544333333333 33221 1222
Q ss_pred hhh----hCCCCeEEecccCHHH---hhcccCcceEEec----CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhc
Q 046077 322 DNR----VSNRGLIIHAWAPQAL---ILNHISTGGFLSH----CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIK 390 (456)
Q Consensus 322 ~~~----~~~~~v~~~~~vp~~~---~l~h~~~~~~I~h----gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G 390 (456)
.+. ....++.+.+++++.+ ++. .++++|.. +..+++.|++++|+|+|+-+..+ ....++ ..+
T Consensus 249 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~-~~~ 321 (377)
T cd03798 249 EALAAELGLEDRVTFLGAVPHEEVPAYYA--AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIIT-DGE 321 (377)
T ss_pred HHHHHhcCCcceEEEeCCCCHHHHHHHHH--hcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhc-CCc
Confidence 222 2246899999999754 453 44566633 44578999999999999876543 344555 336
Q ss_pred cEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 391 VGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 391 ~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
.|.... .-+.+++.++|.+++++++. +..++..+.+.+. -+-...++++.+.+.
T Consensus 322 ~g~~~~-----~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~--~s~~~~~~~~~~~~~ 375 (377)
T cd03798 322 NGLLVP-----PGDPEALAEAILRLLADPWL-RLGRAARRRVAER--FSWENVAERLLELYR 375 (377)
T ss_pred ceeEEC-----CCCHHHHHHHHHHHhcCcHH-HHhHHHHHHHHHH--hhHHHHHHHHHHHHh
Confidence 677763 35889999999999998774 3333333333332 133344455555443
No 60
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.09 E-value=6.2e-09 Score=101.74 Aligned_cols=326 Identities=12% Similarity=0.077 Sum_probs=166.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEcCCCCcCCCCCCCCCCCCeEE-EecCCCCCCCCCCchHHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR-NYHTTLIIPSILVSAIPPSFTQYPRTRT-TQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
+|++++ ++.-|..=+-.|.++|.++ +.++.++.+............. -++.. +.+..+. .+.............+
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l 78 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-FHLPPDYDLNIMS-PGQTLGEITSNMLEGL 78 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-cCCCCCeeeecCC-CCCCHHHHHHHHHHHH
Confidence 566655 7788888888888999886 5565555554433222211000 01211 1111111 1222234444556677
Q ss_pred HHHHhhhcCCCCCCCCcEEEe--cCCc-ccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCCCCCC
Q 046077 82 EANLASRSENPDFPAPLCAIV--DFQV-GWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIPGLPE 158 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~--D~~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl~~ 158 (456)
.+++++. +||+|++ |... ..+..+|..+|||++.+.- |+..
T Consensus 79 ~~~l~~~-------~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~-----------------------------g~~s 122 (365)
T TIGR00236 79 EELLLEE-------KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEA-----------------------------GLRT 122 (365)
T ss_pred HHHHHHc-------CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeC-----------------------------CCCc
Confidence 7888877 9999985 4332 4578899999999875411 1100
Q ss_pred CccCCccccccccCCCCCCCCCCCCCCCCCCCCccccc-CCeEEEEcCCccccHHHHHHHHh-hcCC-CEeeecccCccc
Q 046077 159 EMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIE-GSIALMFNTCDDLDGLFIKYMAD-QIGI-PAWGVGLLLPEQ 235 (456)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~le~~~~~~~~~-~~~~-~v~~vGp~~~~~ 235 (456)
. -.+..++. ...+ ..+. -++.++..+ ....+.+.+ ..++ +++.+|-...+.
T Consensus 123 ~--~~~~~~~~-----------------~~~r--~~~~~~ad~~~~~s-----~~~~~~l~~~G~~~~~I~vign~~~d~ 176 (365)
T TIGR00236 123 G--DRYSPMPE-----------------EINR--QLTGHIADLHFAPT-----EQAKDNLLRENVKADSIFVTGNTVIDA 176 (365)
T ss_pred C--CCCCCCcc-----------------HHHH--HHHHHHHHhccCCC-----HHHHHHHHHcCCCcccEEEeCChHHHH
Confidence 0 00000000 0000 0111 123333333 333333322 1222 477777543211
Q ss_pred cccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-----CCCEEEEEc
Q 046077 236 HWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES-----PGPFIWVVQ 310 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 310 (456)
. ... .......++.+.++ .++++++++++-.... .+.+..+++++... +.++++..+
T Consensus 177 ~------------~~~---~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~ 238 (365)
T TIGR00236 177 L------------LTN---VEIAYSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVH 238 (365)
T ss_pred H------------HHH---HhhccchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 0 000 00001122333233 2334666655432111 13455666666543 455555544
Q ss_pred CCCCCcCcchhhhhh-CCCCeEEecccCHH---HhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHH
Q 046077 311 PGSEEYMPHDLDNRV-SNRGLIIHAWAPQA---LILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVV 386 (456)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~v~~~~~vp~~---~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~ 386 (456)
++.. ....+.+.. ..+++.+.+.+++. .++ .+++++|+.+|.. +.||+++|+|+|.++..++++. .++
T Consensus 239 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l--~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~~ 310 (365)
T TIGR00236 239 LNPV--VREPLHKHLGDSKRVHLIEPLEYLDFLNLA--ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TVE 310 (365)
T ss_pred CChH--HHHHHHHHhCCCCCEEEECCCChHHHHHHH--HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH---HHh
Confidence 3211 111122221 23578888877654 445 4556999988754 7999999999999876555542 222
Q ss_pred HHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHH
Q 046077 387 NYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAIL 428 (456)
Q Consensus 387 ~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 428 (456)
. |.++.+. .++++|.+++.++++|++.++++..-
T Consensus 311 -~-g~~~lv~------~d~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 311 -A-GTNKLVG------TDKENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred -c-CceEEeC------CCHHHHHHHHHHHHhChHHHHHhhhc
Confidence 3 7776662 37899999999999998877765543
No 61
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.09 E-value=2.7e-07 Score=89.65 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=91.3
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcch------hhhhhCCCCeEEecc-cCHH---H
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHD------LDNRVSNRGLIIHAW-APQA---L 340 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~-vp~~---~ 340 (456)
+.+++.+|+..... .+.+...+..+.+. +.++ +++|.+........ +.......++.+.+. +|+. .
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l-~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRL-LVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEE-EEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 35566778776544 34444444445443 3333 33444321111110 222223467887754 8854 4
Q ss_pred hhcccCcceEEec------CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHH
Q 046077 341 ILNHISTGGFLSH------CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIER 414 (456)
Q Consensus 341 ~l~h~~~~~~I~h------gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 414 (456)
++ ..++++|.- +-.+++.||+++|+|+|+.+..+ ...+.+. +.|..+. .-+.+++.+++.+
T Consensus 264 ~~--~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~-----~~d~~~~~~~l~~ 330 (366)
T cd03822 264 LF--SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP-----PGDPAALAEAIRR 330 (366)
T ss_pred HH--hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc-----CCCHHHHHHHHHH
Confidence 56 445577742 33468999999999999987654 2233423 6777773 2468999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 415 LMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 415 ~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
+++|++.++++.+-+...... -+-.+.++++.+
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~ 363 (366)
T cd03822 331 LLADPELAQALRARAREYARA--MSWERVAERYLR 363 (366)
T ss_pred HHcChHHHHHHHHHHHHHHhh--CCHHHHHHHHHH
Confidence 999876555555444444332 244444544444
No 62
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.09 E-value=3.1e-07 Score=91.31 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=86.0
Q ss_pred CCceEEEecCCCCCCC-HHHHHHHHHHHHhC--------CCCEEEEEcCCCCCcCcchhhhhh---CCCCeEEe-cccCH
Q 046077 272 RGSVLYVAFGSEVGPT-REEYRELAGALEES--------PGPFIWVVQPGSEEYMPHDLDNRV---SNRGLIIH-AWAPQ 338 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--------~~~~i~~~~~~~~~~~~~~~~~~~---~~~~v~~~-~~vp~ 338 (456)
++..++++.|...... .+.+.+.+..+... +.+ ++++|.+.. .+.+.+.. +-+++++. +|+|.
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~-l~ivG~G~~---~~~l~~~~~~~~l~~~~~~~g~~~~ 305 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLL-CIITGKGPL---KEKYLERIKELKLKKVTIRTPWLSA 305 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEE-EEEEecCcc---HHHHHHHHHHcCCCcEEEEcCcCCH
Confidence 3446666778766543 34444444444321 233 344454421 12333222 22456654 58885
Q ss_pred HH---hhcccCcceEEe----cCC---chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHH
Q 046077 339 AL---ILNHISTGGFLS----HCG---WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDI 408 (456)
Q Consensus 339 ~~---~l~h~~~~~~I~----hgG---~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l 408 (456)
.+ +| ..++++|. ..| -+++.|++++|+|+|+.... .....++ .-+.|+.+ + +.+++
T Consensus 306 ~~~~~~l--~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~-~~~~G~lv-----~--d~~~l 371 (415)
T cd03816 306 EDYPKLL--ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVK-HGENGLVF-----G--DSEEL 371 (415)
T ss_pred HHHHHHH--HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhc-CCCCEEEE-----C--CHHHH
Confidence 55 45 44557763 112 34799999999999986543 4445666 43688877 1 68999
Q ss_pred HHHHHHHhCC---HHHHHHHHHHHHHHHh
Q 046077 409 AEGIERLMSD---EEMKTRAAILQVKFEQ 434 (456)
Q Consensus 409 ~~~i~~~l~~---~~~~~~a~~l~~~~~~ 434 (456)
.++|.++++| ++.++++++-+++...
T Consensus 372 a~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 372 AEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 9999999998 7766666665555544
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=1.5e-07 Score=91.30 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=87.6
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcCcchhhh----hhCCCCeEEecccCHHH---hhcccC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESP-GPFIWVVQPGSEEYMPHDLDN----RVSNRGLIIHAWAPQAL---ILNHIS 346 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~vp~~~---~l~h~~ 346 (456)
.+++..|+.... .....++++++... .+++++ |.+. ....+.+ .....|+.+.+|+|+.+ ++. .
T Consensus 192 ~~i~~~G~~~~~--K~~~~li~a~~~l~~~~l~i~-G~g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~--~ 263 (357)
T cd03795 192 PFFLFVGRLVYY--KGLDVLLEAAAALPDAPLVIV-GEGP---LEAELEALAAALGLLDRVRFLGRLDDEEKAALLA--A 263 (357)
T ss_pred cEEEEecccccc--cCHHHHHHHHHhccCcEEEEE-eCCh---hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH--h
Confidence 566777876543 34445666666555 444433 3321 1122222 22346899999999754 553 3
Q ss_pred cceEEe-----cCCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHH
Q 046077 347 TGGFLS-----HCGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEE 420 (456)
Q Consensus 347 ~~~~I~-----hgG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 420 (456)
++++|. +-|. .++.||+++|+|+|+....+....... . . +.|.... .-+.+++.++|.++++|++
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~--~-~-~~g~~~~-----~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL--H-G-VTGLVVP-----PGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh--C-C-CceEEeC-----CCCHHHHHHHHHHHHHCHH
Confidence 456662 2343 479999999999999876665544332 1 3 6787773 3478999999999999987
Q ss_pred HHHHHHHHHHH
Q 046077 421 MKTRAAILQVK 431 (456)
Q Consensus 421 ~~~~a~~l~~~ 431 (456)
.++++++.+.+
T Consensus 335 ~~~~~~~~~~~ 345 (357)
T cd03795 335 LRERLGEAARE 345 (357)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.05 E-value=4.7e-07 Score=89.80 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=92.8
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCE-EEEEcCCC-CC-cCcchhhhh----hCCCCeEEecccCHHH---
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES--PGPF-IWVVQPGS-EE-YMPHDLDNR----VSNRGLIIHAWAPQAL--- 340 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~-i~~~~~~~-~~-~~~~~~~~~----~~~~~v~~~~~vp~~~--- 340 (456)
+.+++..|++.... .+.+.+.+..+.+. +.++ ++++|... .+ ...+.+... ...+++.+.+++++.+
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 298 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVH 298 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHH
Confidence 35667788876544 34444444444322 2123 23344321 11 111223222 1235799999998654
Q ss_pred hhcccCcceEEec---CCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh
Q 046077 341 ILNHISTGGFLSH---CGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM 416 (456)
Q Consensus 341 ~l~h~~~~~~I~h---gG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l 416 (456)
++..+ +++|.- -|. .++.||+++|+|+|+....+ ....++ .-..|+.+. .-+.+++.++|.+++
T Consensus 299 ~l~~a--d~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~-~~~~g~~~~-----~~d~~~la~~i~~~l 366 (405)
T TIGR03449 299 VYRAA--DVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVA-DGETGLLVD-----GHDPADWADALARLL 366 (405)
T ss_pred HHHhC--CEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhc-cCCceEECC-----CCCHHHHHHHHHHHH
Confidence 56444 477642 233 58999999999999976543 333455 325677763 247899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 417 SDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 417 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
+|++.++++.+-+.+..+. -+-...++++++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~--fsw~~~~~~~~~~y 399 (405)
T TIGR03449 367 DDPRTRIRMGAAAVEHAAG--FSWAATADGLLSSY 399 (405)
T ss_pred hCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 9887666555544443322 24444444444433
No 65
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.05 E-value=3.4e-07 Score=90.56 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=63.1
Q ss_pred CCCeEEecccCHHH---hhcccCcceEEe--c-CCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCC
Q 046077 327 NRGLIIHAWAPQAL---ILNHISTGGFLS--H-CGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL 399 (456)
Q Consensus 327 ~~~v~~~~~vp~~~---~l~h~~~~~~I~--h-gG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~ 399 (456)
.+++.+.+++|+.+ ++..++ ++|. . .|. .++.||+++|+|+|.... ......+++. ..|..+.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~ad--v~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~--- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSD--VHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVD--- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCc--EEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcC---
Confidence 46799999999765 454444 6654 2 222 478999999999998644 3344555522 4677763
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 046077 400 SETVKKGDIAEGIERLMSDEEMKTRAAILQV 430 (456)
Q Consensus 400 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~ 430 (456)
.-+++++.++|.++++|++.++++.+-+.
T Consensus 350 --~~d~~~la~~i~~ll~~~~~~~~l~~~ar 378 (396)
T cd03818 350 --FFDPDALAAAVIELLDDPARRARLRRAAR 378 (396)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34789999999999999876555544433
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.03 E-value=2.4e-07 Score=91.66 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=76.3
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhh----hCCCCeEEecccCHHH---hh
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNR----VSNRGLIIHAWAPQAL---IL 342 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~vp~~~---~l 342 (456)
+..+++..|...... .+.+.+.+..+.+. +.+++ ++|.+.. .+.+.+. ...+++.+.+|+++.+ ++
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~-i~G~g~~---~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l 267 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFI-IGGDGPK---RILLEEMREKYNLQDRVELLGAVPHERVRDVL 267 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEE-EEeCCch---HHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 346777788776543 34444444444332 33433 3443321 1222221 2235688899998654 55
Q ss_pred cccCcceEEecC---Cc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 343 NHISTGGFLSHC---GW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 343 ~h~~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
+.++++|.-+ |. .++.||+++|+|+|+.+..+- ...+. . |.+... ..+.+++.+++.+++++
T Consensus 268 --~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~-~-~~~~~~------~~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 268 --VQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLP-P-DMILLA------EPDVESIVRKLEEAISI 333 (398)
T ss_pred --HhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhee-C-Cceeec------CCCHHHHHHHHHHHHhC
Confidence 4555777543 43 399999999999999876542 22444 3 434333 13789999999999976
Q ss_pred H
Q 046077 419 E 419 (456)
Q Consensus 419 ~ 419 (456)
.
T Consensus 334 ~ 334 (398)
T cd03796 334 L 334 (398)
T ss_pred h
Confidence 4
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.99 E-value=5.1e-07 Score=87.63 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=86.8
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhh----hhhCCCCeEEecccCHHH---hh
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLD----NRVSNRGLIIHAWAPQAL---IL 342 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~vp~~~---~l 342 (456)
++.+++..|+..... .+.+.+++..+.+. +.++ +++|.+.. ....... .....+++.+.+|+++.+ ++
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l-~i~G~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHL-VIAGPDEG-GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEE-EEECCCCc-chHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 345667778765433 34444444444442 3333 34444321 1111111 222246799999999654 45
Q ss_pred cccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 343 NHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 343 ~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
. .++++|.-+- ..++.||+++|+|+|+.+.. .....+. . +.|.... .+.+++.++|.+++++
T Consensus 280 ~--~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~------~~~~~~~~~i~~l~~~ 345 (375)
T cd03821 280 A--DADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVD------DDVDALAAALRRALEL 345 (375)
T ss_pred h--hCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeC------CChHHHHHHHHHHHhC
Confidence 4 4456765443 46899999999999997543 3444455 4 7787763 2459999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 046077 419 EEMKTRAAILQVKF 432 (456)
Q Consensus 419 ~~~~~~a~~l~~~~ 432 (456)
++.++++.+.+.+.
T Consensus 346 ~~~~~~~~~~~~~~ 359 (375)
T cd03821 346 PQRLKAMGENGRAL 359 (375)
T ss_pred HHHHHHHHHHHHHH
Confidence 87666665555554
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.98 E-value=3.8e-07 Score=88.42 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEE-EEcCCCC-CcCcchhhhhhCCCCeEEecccCHHH---hhcccC
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIW-VVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHIS 346 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~-~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~ 346 (456)
++++++.+|+..... .+.+.+.+..+.+.+..+.+ ++|.+.. +.+.....+....+++.+.+++|+.+ ++..
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~-- 255 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRA-- 255 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh--
Confidence 346677778765433 45555555555554233332 2333221 11111112222346899999998554 5544
Q ss_pred cceEEec----------CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh
Q 046077 347 TGGFLSH----------CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM 416 (456)
Q Consensus 347 ~~~~I~h----------gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l 416 (456)
++++|.- |.-+++.|++++|+|+|+.+... ....++ .-..|..+. .-+.+++.++|.+++
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~-~~~~g~~~~-----~~~~~~l~~~i~~~~ 325 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVE-DGETGLLVP-----PGDPEALADAIERLL 325 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhh-CCCceEEeC-----CCCHHHHHHHHHHHH
Confidence 4466663 23468999999999999876533 223444 424787773 238899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 046077 417 SDEEMKTRAAILQV 430 (456)
Q Consensus 417 ~~~~~~~~a~~l~~ 430 (456)
+|++.+.++.+.+.
T Consensus 326 ~~~~~~~~~~~~a~ 339 (355)
T cd03799 326 DDPELRREMGEAGR 339 (355)
T ss_pred hCHHHHHHHHHHHH
Confidence 98875555444433
No 69
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.98 E-value=1.7e-08 Score=96.26 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=93.2
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCcCcchhhhhhCC-CCeEEecccCHHHhhcccCcceE
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEESPG--PFIWVVQPGSEEYMPHDLDNRVSN-RGLIIHAWAPQALILNHISTGGF 350 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~vp~~~~l~h~~~~~~ 350 (456)
++|.+--||..+.-...+..++++...... ...++.+.... +.+.+.... ..+.+.+ .-.+++ ..+|++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~----~~i~~~~~~~~~~~~~~--~~~~~m--~~aDla 239 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG----KDLKEIYGDISEFEISY--DTHKAL--LEAEFA 239 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH----HHHHHHHhcCCCcEEec--cHHHHH--HhhhHH
Confidence 689999999876444455544455444322 22222222211 222222211 2233332 333566 455699
Q ss_pred EecCCchhHHHHHHhCCCeecc-CCccchhhHHHHHHH--HhccEEEEec----------CCCCcccHHHHHHHHHHHhC
Q 046077 351 LSHCGWNSTMEAIVHGVPFLAW-PIRGDQYFNAKLVVN--YIKVGLRVTD----------DLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 351 I~hgG~gt~~e~l~~GvP~v~~-P~~~dQ~~na~~~~~--~~G~g~~~~~----------~~~~~~~~~~l~~~i~~~l~ 417 (456)
|+.+|..|+ |+..+|+|+|+. ....-|..||+++.+ ..|+.-.+.. -.++..|++.|.+++.+ ..
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~~ 317 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-MD 317 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-HH
Confidence 999999999 999999999983 235689999999982 2244433321 01356889999999987 23
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 046077 418 DEEMKTRAAILQVKFEQGFPASSVAALNAF 447 (456)
Q Consensus 418 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 447 (456)
..++++...++.+.+.. +++.+.++.+
T Consensus 318 ~~~~~~~~~~l~~~l~~---~a~~~~A~~i 344 (347)
T PRK14089 318 REKFFKKSKELREYLKH---GSAKNVAKIL 344 (347)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 34455555655555532 3444444333
No 70
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.98 E-value=1.3e-06 Score=84.76 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=84.9
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCE-EEEEcCCCC-CcCcchh----hhhhCCCCeEEecccCHH-Hhhcc
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEESPGPF-IWVVQPGSE-EYMPHDL----DNRVSNRGLIIHAWAPQA-LILNH 344 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~-i~~~~~~~~-~~~~~~~----~~~~~~~~v~~~~~vp~~-~~l~h 344 (456)
+..+++..|...... .+.+.+++..+.+.+..+ ++++|.+.. ..+...+ .......++.+.+|.+.. .++.
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~- 262 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA- 262 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH-
Confidence 346677778776544 566666666666643222 334444321 1111111 111223578888986533 4664
Q ss_pred cCcceEEecC----C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh-CC
Q 046077 345 ISTGGFLSHC----G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM-SD 418 (456)
Q Consensus 345 ~~~~~~I~hg----G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l-~~ 418 (456)
.++++|+-+ | .+++.||+++|+|+|+....+ +...+. .-+.|..+. .-+.+++.++|..++ .+
T Consensus 263 -~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~-~~~~g~~~~-----~~~~~~l~~~i~~~~~~~ 331 (355)
T cd03819 263 -LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVR-PGETGLLVP-----PGDAEALAQALDQILSLL 331 (355)
T ss_pred -hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHh-CCCceEEeC-----CCCHHHHHHHHHHHHhhC
Confidence 444666533 3 359999999999999875433 344555 324787773 348899999996555 46
Q ss_pred HHHHHHHHHHHHHH
Q 046077 419 EEMKTRAAILQVKF 432 (456)
Q Consensus 419 ~~~~~~a~~l~~~~ 432 (456)
++.++++++-+++.
T Consensus 332 ~~~~~~~~~~a~~~ 345 (355)
T cd03819 332 PEGRAKMFAKARMC 345 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555444444333
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.98 E-value=3.4e-07 Score=87.94 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=82.0
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCHH-HhhcccCc
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQA-LILNHIST 347 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~~-~~l~h~~~ 347 (456)
++.+++..|+..... .+.+.+++..+... +.++++ +|.+.. +.+.+.........++.+.++.+.. .+++ .+
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~~ 264 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVI-LGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLK--AA 264 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEE-EcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHH--hC
Confidence 346777788876433 34444444554443 344444 343221 1111111122224578888887754 4664 44
Q ss_pred ceEEecC----CchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHH---HHHHHHHhCCHH
Q 046077 348 GGFLSHC----GWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDI---AEGIERLMSDEE 420 (456)
Q Consensus 348 ~~~I~hg----G~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l---~~~i~~~l~~~~ 420 (456)
+++|+-+ ..+++.||+++|+|+|+.... .....+++. +.|.... .-+.+.+ .+++..++++++
T Consensus 265 d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~-----~~~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 265 DLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVP-----VGDEAALAAAALALLDLLLDPE 334 (353)
T ss_pred CEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEEC-----CCCHHHHHHHHHHHHhccCChH
Confidence 5777432 346899999999999986544 445566633 7788774 2456666 677777777776
Q ss_pred HHHHHHH
Q 046077 421 MKTRAAI 427 (456)
Q Consensus 421 ~~~~a~~ 427 (456)
.+++++.
T Consensus 335 ~~~~~~~ 341 (353)
T cd03811 335 LRERLAA 341 (353)
T ss_pred HHHHHHH
Confidence 6555554
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.98 E-value=3e-07 Score=89.37 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=88.6
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhh----hhCCCCeEEecccCHH-Hhhccc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDN----RVSNRGLIIHAWAPQA-LILNHI 345 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~vp~~-~~l~h~ 345 (456)
..+++..|+..... .+.+.+.+..+.+. +.+++++ |.+.. .+.+.. .....++.+.++..+. .+++
T Consensus 188 ~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-- 261 (360)
T cd04951 188 TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIA-GDGPL---RATLERLIKALGLSNRVKLLGLRDDIAAYYN-- 261 (360)
T ss_pred CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEE-cCCCc---HHHHHHHHHhcCCCCcEEEecccccHHHHHH--
Confidence 36677788765433 34444444444332 4555544 43321 122222 1223578888887653 4664
Q ss_pred CcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh-CCHH
Q 046077 346 STGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM-SDEE 420 (456)
Q Consensus 346 ~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l-~~~~ 420 (456)
.++++|.-+. .+++.||+++|+|+|+.. ...+...+++ .|..+. .-+.+++.+++.+++ .+++
T Consensus 262 ~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~---~g~~~~-----~~~~~~~~~~i~~ll~~~~~ 329 (360)
T cd04951 262 AADLFVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGD---SGLIVP-----ISDPEALANKIDEILKMSGE 329 (360)
T ss_pred hhceEEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecC---CceEeC-----CCCHHHHHHHHHHHHhCCHH
Confidence 4446766543 568999999999999753 3445555553 344442 247889999999998 4566
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 421 MKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 421 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
+++.+...++...+. -+-...++++.+
T Consensus 330 ~~~~~~~~~~~~~~~--~s~~~~~~~~~~ 356 (360)
T cd04951 330 ERDIIGARRERIVKK--FSINSIVQQWLT 356 (360)
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence 666555544444433 244444444443
No 73
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.94 E-value=5.8e-06 Score=80.40 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCCeEEecccC-HH---HhhcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecC
Q 046077 327 NRGLIIHAWAP-QA---LILNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDD 398 (456)
Q Consensus 327 ~~~v~~~~~vp-~~---~~l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~ 398 (456)
..++...+|++ +. .++ ..++++|.-+. .+++.||+++|+|+|+....+ ....+.+. +.|..+.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~-~~g~~~~-- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHG-VTGYLAK-- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCC-CceEEeC--
Confidence 35688889998 43 346 45568888653 478999999999999875432 22234322 4677663
Q ss_pred CCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHh
Q 046077 399 LSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFE-QGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 399 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~l~ 452 (456)
..+.+++.+++.++++|++.+++..+.++... .. -+.....+++++..+
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~y~ 363 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREELGEAARELAENE--FDSRVQAKRYLSLYE 363 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHh
Confidence 34789999999999998875555444444332 22 244555556655543
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.88 E-value=3.6e-07 Score=89.13 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=91.5
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCcCcchhhhh----hCCCCeEEecccCH--HHhhc-ccC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESPGP-FIWVVQPGSEEYMPHDLDNR----VSNRGLIIHAWAPQ--ALILN-HIS 346 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~vp~--~~~l~-h~~ 346 (456)
.+++..|.........+..+++++...... -++++|.+.. .+.+.+. ..+.++.+.+|+++ ..+-. ...
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~---~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~ 257 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD---FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN 257 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc---HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc
Confidence 556677776432234455666666654322 2334554321 1222222 22467999999854 33211 134
Q ss_pred cceEEecCC----chhHHHHHHhCCCeeccC-CccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 347 TGGFLSHCG----WNSTMEAIVHGVPFLAWP-IRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 347 ~~~~I~hgG----~gt~~e~l~~GvP~v~~P-~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
++++|..+- ..++.||+++|+|+|+.- ..+ ....++ .-..|..+. .-+.+++.++|.++++|++.
T Consensus 258 ~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~-~~~~G~lv~-----~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 258 VSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIK-PGLNGELYT-----PGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred CcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHcc-CCCceEEEC-----CCCHHHHHHHHHHHHhCccc
Confidence 567776433 479999999999999875 433 223454 325687773 34889999999999998873
Q ss_pred --HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 046077 422 --KTRAAILQVKFEQGFPASSVAALNAFSDF 450 (456)
Q Consensus 422 --~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 450 (456)
....++..+++... ...+.+.++++.
T Consensus 328 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 355 (359)
T PRK09922 328 YQHDAIPNSIERFYEV---LYFKNLNNALFS 355 (359)
T ss_pred CCHHHHHHHHHHhhHH---HHHHHHHHHHHH
Confidence 44444444444433 333444444443
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.87 E-value=3.8e-06 Score=81.69 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=84.1
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEcCCC-CCcCcchhh-hhhCCCCeEEecccCHHHhhc-ccCcceEE
Q 046077 277 YVAFGSEVGPTREEYRELAGALEES--PGPFIWVVQPGS-EEYMPHDLD-NRVSNRGLIIHAWAPQALILN-HISTGGFL 351 (456)
Q Consensus 277 ~v~~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~v~~~~~vp~~~~l~-h~~~~~~I 351 (456)
++..|+..... .+..+++++... +.++ +++|.+. ...+.+.+. .....+++.+.+++++.++.. ...+++++
T Consensus 196 i~~~G~~~~~K--g~~~li~a~~~l~~~~~l-~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 272 (363)
T cd04955 196 YLLVGRIVPEN--NIDDLIEAFSKSNSGKKL-VIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFY 272 (363)
T ss_pred EEEEecccccC--CHHHHHHHHHhhccCceE-EEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEE
Confidence 45578776543 333445555444 3444 4455432 111112222 122356899999999875322 13345666
Q ss_pred ecCCc-----hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHH
Q 046077 352 SHCGW-----NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAA 426 (456)
Q Consensus 352 ~hgG~-----gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 426 (456)
.++-. +++.||+++|+|+|+....+... .++ ..|..... . +.+.+++.++++|++.+.+..
T Consensus 273 ~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e----~~~---~~g~~~~~------~-~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 273 LHGHSVGGTNPSLLEAMAYGCPVLASDNPFNRE----VLG---DKAIYFKV------G-DDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred eCCccCCCCChHHHHHHHcCCCEEEecCCccce----eec---CCeeEecC------c-hHHHHHHHHHHhCHHHHHHHH
Confidence 65433 47899999999999876543221 222 12433421 1 129999999999876655554
Q ss_pred HHHHHH-HhcCCCChHHHHHHHHHH
Q 046077 427 ILQVKF-EQGFPASSVAALNAFSDF 450 (456)
Q Consensus 427 ~l~~~~-~~~~~~~~~~~~~~~~~~ 450 (456)
+.+.+. .+. -+-...++++++.
T Consensus 339 ~~~~~~~~~~--fs~~~~~~~~~~~ 361 (363)
T cd04955 339 KAARERIREK--YTWEKIADQYEEL 361 (363)
T ss_pred HHHHHHHHHh--CCHHHHHHHHHHH
Confidence 443333 222 2545555555543
No 76
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.84 E-value=1.9e-06 Score=84.96 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=84.8
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcCc-----chhhhh-----hCCCCeEEeccc
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES-----PGPFIWVVQPGSEEYMP-----HDLDNR-----VSNRGLIIHAWA 336 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~-----~~~~~~-----~~~~~v~~~~~v 336 (456)
...+++..|+..... .+.+.++++.+... +.++ +++|.+.....+ +.+... ...+++.+.+++
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l-~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRL-VIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEE-EEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 346777888876644 44455544444433 3344 344543211100 122211 124689999999
Q ss_pred CHHH---hhcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHH
Q 046077 337 PQAL---ILNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIA 409 (456)
Q Consensus 337 p~~~---~l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~ 409 (456)
|+.+ ++. .+++++..+. ..++.||+++|+|+|+.-..+. ...+.+. +.|..+. .+.+++.
T Consensus 289 ~~~~~~~~l~--~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~----~e~i~~~-~~g~~~~------~~~~~~a 355 (392)
T cd03805 289 SDSQKELLLS--SARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGP----LETVVDG-ETGFLCE------PTPEEFA 355 (392)
T ss_pred ChHHHHHHHh--hCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCc----HHHhccC-CceEEeC------CCHHHHH
Confidence 9764 454 4457775322 2578899999999999754432 2334422 5677662 3789999
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q 046077 410 EGIERLMSDEEMKTRAAILQ 429 (456)
Q Consensus 410 ~~i~~~l~~~~~~~~a~~l~ 429 (456)
++|.+++++++.+++..+-+
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a 375 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAG 375 (392)
T ss_pred HHHHHHHhChHHHHHHHHHH
Confidence 99999999886555544433
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.83 E-value=4.8e-06 Score=80.46 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=86.5
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhh--hhhCCCCeEEecccCHH-HhhcccCc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLD--NRVSNRGLIIHAWAPQA-LILNHIST 347 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~vp~~-~~l~h~~~ 347 (456)
..+++..|+..... .+.+.+.+..+.+. +.++++ +|.+.....-.... ......++.+.+..+.. .++. .+
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~a 269 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLL-VGDGPDRANLELLALKELGLEDKVILLGERSDVPALLN--AL 269 (365)
T ss_pred CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEE-ecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHH--hC
Confidence 46677788876543 34444444444332 344443 34332111001111 11123467766655533 4664 45
Q ss_pred ceEEecCCc----hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 046077 348 GGFLSHCGW----NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKT 423 (456)
Q Consensus 348 ~~~I~hgG~----gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 423 (456)
+++|..+.. +++.||+++|+|+|+.... .+...+.+ .|..+. .-+.+++.++|.++++|++.++
T Consensus 270 di~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~ 337 (365)
T cd03807 270 DVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVP-----PGDPEALAEAIEALLADPALRQ 337 (365)
T ss_pred CEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeC-----CCCHHHHHHHHHHHHhChHHHH
Confidence 588876554 7999999999999986543 34444442 455553 2368999999999999876444
Q ss_pred HHHHHH-HHHHhcCCCChHHHHHHHHH
Q 046077 424 RAAILQ-VKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 424 ~a~~l~-~~~~~~~~~~~~~~~~~~~~ 449 (456)
...+.+ +.+++. -+-.+.++++.+
T Consensus 338 ~~~~~~~~~~~~~--~s~~~~~~~~~~ 362 (365)
T cd03807 338 ALGEAARERIEEN--FSIEAMVEAYEE 362 (365)
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 433333 333332 244444444443
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.78 E-value=7.9e-07 Score=86.76 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=85.1
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhh----CCCCeEEecccCHHH---hhccc
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRV----SNRGLIIHAWAPQAL---ILNHI 345 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~vp~~~---~l~h~ 345 (456)
.+++..|+..... .+.+.+.+..+.+. ..-.++++|.+.. .+.+.... ...++.+.+++|+.+ ++.
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-- 263 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL---LAALEALARALGLGGRVTFLGAQPHAEVRELMR-- 263 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH---HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHH--
Confidence 4555667776544 34444444444433 2223445554321 12222211 246799999998654 464
Q ss_pred CcceEEecC----------CchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHH
Q 046077 346 STGGFLSHC----------GWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERL 415 (456)
Q Consensus 346 ~~~~~I~hg----------G~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~ 415 (456)
.++++|.-+ -.+++.||+++|+|+|.-+..+ ++..+.+. +.|..+. .-+.+++.++|.++
T Consensus 264 ~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l 333 (367)
T cd05844 264 RARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETGLLVP-----EGDVAALAAALGRL 333 (367)
T ss_pred hCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-CeeEEEC-----CCCHHHHHHHHHHH
Confidence 445776532 2468999999999999876643 44555533 7788773 34779999999999
Q ss_pred hCCHHHHHHHHHHH
Q 046077 416 MSDEEMKTRAAILQ 429 (456)
Q Consensus 416 l~~~~~~~~a~~l~ 429 (456)
++|++.++++.+-+
T Consensus 334 ~~~~~~~~~~~~~a 347 (367)
T cd05844 334 LADPDLRARMGAAG 347 (367)
T ss_pred HcCHHHHHHHHHHH
Confidence 99987655544433
No 79
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.77 E-value=1e-05 Score=77.81 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=75.8
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-cCcchhhhhh-CCCCeEEecccCHHH---hhcccCcce
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEE-YMPHDLDNRV-SNRGLIIHAWAPQAL---ILNHISTGG 349 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~~vp~~~---~l~h~~~~~ 349 (456)
...+..|..... +....++++++..+.++++ +|.+... .+-....... ..+++.+.+++++.+ +++.+ ++
T Consensus 172 ~~i~~~Gr~~~~--Kg~~~li~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~--d~ 246 (335)
T cd03802 172 DYLLFLGRISPE--KGPHLAIRAARRAGIPLKL-AGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA--RA 246 (335)
T ss_pred CEEEEEEeeccc--cCHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC--cE
Confidence 344556777433 3344566777777777654 4444221 1101111111 246899999999764 45444 46
Q ss_pred EEec----CCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 350 FLSH----CGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 350 ~I~h----gG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
++.- -|. .++.||+++|+|+|+....+ +...++ .-..|..+. ..+++.+++.+++..
T Consensus 247 ~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~-~~~~g~l~~-------~~~~l~~~l~~l~~~ 308 (335)
T cd03802 247 LLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVE-DGVTGFLVD-------SVEELAAAVARADRL 308 (335)
T ss_pred EEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhhee-CCCcEEEeC-------CHHHHHHHHHHHhcc
Confidence 6542 343 47999999999999886543 223444 313677662 289999999988754
No 80
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.76 E-value=1.8e-06 Score=83.74 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=89.9
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCC--CCEEEEEcCCCCCcCcchhh---hhhCCCCeEEecccCHHH---hhccc
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESP--GPFIWVVQPGSEEYMPHDLD---NRVSNRGLIIHAWAPQAL---ILNHI 345 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~vp~~~---~l~h~ 345 (456)
.+++..|+..... .+.+.+.+..+.+.+ .++++ +|.+.. ....... ......++.+.+++|+.+ ++..+
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i-~G~~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 273 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVI-VGKRGW-LNEELLARLRELGLGDRVRFLGYVSDEELAALYRGA 273 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEE-ecCCcc-ccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhh
Confidence 4566678776544 455555555555443 44443 343221 1111111 123456899999998764 45434
Q ss_pred CcceEEec----CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 346 STGGFLSH----CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 346 ~~~~~I~h----gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
+++|.- +..+++.||+++|+|+|+-...+-. ..+. ..|..+. ..+.+++.++|.++++|++.
T Consensus 274 --d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~----e~~~---~~~~~~~-----~~~~~~~~~~i~~l~~~~~~ 339 (365)
T cd03809 274 --RAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLP----EVAG---DAALYFD-----PLDPEALAAAIERLLEDPAL 339 (365)
T ss_pred --hhhcccchhccCCCCHHHHhcCCCcEEecCCCCcc----ceec---CceeeeC-----CCCHHHHHHHHHHHhcCHHH
Confidence 455543 2346899999999999986553211 1222 2355552 24789999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHH
Q 046077 422 KTRAAILQVKFEQGFPASSVAALNAF 447 (456)
Q Consensus 422 ~~~a~~l~~~~~~~~~~~~~~~~~~~ 447 (456)
+.++.+.+....+. -+-.+.++.+
T Consensus 340 ~~~~~~~~~~~~~~--~sw~~~~~~~ 363 (365)
T cd03809 340 REELRERGLARAKR--FSWEKTARRT 363 (365)
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHH
Confidence 77776665544333 2444444443
No 81
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.75 E-value=6.8e-08 Score=77.40 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=79.9
Q ss_pred ceEEEecCCCCCCC--HHH-HHHHHHHHHhCCC-CEEEEEcCCCCCcCcchhhhhhCCCC--eEEecccCHH-HhhcccC
Q 046077 274 SVLYVAFGSEVGPT--REE-YRELAGALEESPG-PFIWVVQPGSEEYMPHDLDNRVSNRG--LIIHAWAPQA-LILNHIS 346 (456)
Q Consensus 274 ~vv~v~~GS~~~~~--~~~-~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~vp~~-~~l~h~~ 346 (456)
..|||+-||....+ ..- -.+..+.|.+.|. +.|+..|.+. ...++.........+ +..++|-|.. +..+ +
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~--~ 80 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-PFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIR--S 80 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-cCCCCHHHhhcccCCeEEEEEecCccHHHHHh--h
Confidence 47999999986433 111 1236677888876 6667777663 223333332223334 4455677753 3442 3
Q ss_pred cceEEecCCchhHHHHHHhCCCeeccCC----ccchhhHHHHHHHHhccEEEE
Q 046077 347 TGGFLSHCGWNSTMEAIVHGVPFLAWPI----RGDQYFNAKLVVNYIKVGLRV 395 (456)
Q Consensus 347 ~~~~I~hgG~gt~~e~l~~GvP~v~~P~----~~dQ~~na~~~~~~~G~g~~~ 395 (456)
++++|+|+|+||+.|.|+.|+|.|+++- .++|..-|..+++. |.=..-
T Consensus 81 AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 81 ADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred ccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 5699999999999999999999999984 68999999999954 654443
No 82
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=3.2e-06 Score=80.42 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=63.0
Q ss_pred EecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 046077 351 LSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQV 430 (456)
Q Consensus 351 I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~ 430 (456)
+-+||+| ..|.+++|+|+|.-|+...|.+-++++++. |+|+.++ +++.+.+++..+++|++.|+++.+-..
T Consensus 328 v~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~ 398 (419)
T COG1519 328 VPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGL 398 (419)
T ss_pred cCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4477876 679999999999999999999999999955 9999982 378899999999988888777766655
Q ss_pred HHHhc
Q 046077 431 KFEQG 435 (456)
Q Consensus 431 ~~~~~ 435 (456)
.+-..
T Consensus 399 ~~v~~ 403 (419)
T COG1519 399 EFLAQ 403 (419)
T ss_pred HHHHH
Confidence 55543
No 83
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.74 E-value=3e-05 Score=77.75 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCCeEEecccCHHHh---hccc--CcceEEecC---Cc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEec
Q 046077 327 NRGLIIHAWAPQALI---LNHI--STGGFLSHC---GW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTD 397 (456)
Q Consensus 327 ~~~v~~~~~vp~~~~---l~h~--~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~ 397 (456)
..++.+.+++++.++ +..+ +++++|..+ |. .++.||+++|+|+|+....+ ....++ .-..|+.+.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~-~~~~G~lv~- 389 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIA-NCRNGLLVD- 389 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhc-CCCcEEEeC-
Confidence 356888888886654 4323 236888765 43 58999999999999886543 334444 324687774
Q ss_pred CCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHH
Q 046077 398 DLSETVKKGDIAEGIERLMSDEEMKTRAAILQVK-FEQGFPASSVAALNAFSDF 450 (456)
Q Consensus 398 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~ 450 (456)
.-+++++.++|.++++|++.+++..+.+.+ +.+. -+-...++++.+.
T Consensus 390 ----~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l 437 (439)
T TIGR02472 390 ----VLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRI 437 (439)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence 347899999999999998766555544433 2222 2444444454443
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.70 E-value=6.5e-05 Score=73.95 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhhh----C-CCCeEE-ecccCHHH---hhc
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNRV----S-NRGLII-HAWAPQAL---ILN 343 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~----~-~~~v~~-~~~vp~~~---~l~ 343 (456)
.+++..|...... .+..+++++... +.+++++.+......+-+.+.+.. . ..++.. .+++++.+ ++
T Consensus 202 ~~i~~~Grl~~~K--g~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~- 278 (388)
T TIGR02149 202 PYILFVGRITRQK--GVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELL- 278 (388)
T ss_pred eEEEEEccccccc--CHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHH-
Confidence 4566678776433 344444555443 456555544332211112222211 1 123554 45777553 46
Q ss_pred ccCcceEEecC---C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCC-CCcccHHHHHHHHHHHhCC
Q 046077 344 HISTGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL-SETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 344 h~~~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~ 418 (456)
..+|++|+-+ | ..++.||+++|+|+|+.... .....+++. +.|..++.+. ...-..+++.++|.++++|
T Consensus 279 -~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 279 -SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred -HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHHHHhC
Confidence 4455777532 2 35779999999999987543 344556533 5788874310 0011128999999999999
Q ss_pred HHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHhh
Q 046077 419 EEMKTRAAILQVK-FEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 419 ~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
++.++++.+-+.+ ..+. -+-...++++++..++
T Consensus 353 ~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 353 PELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHh
Confidence 8766655554443 2222 2555555566555443
No 85
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.70 E-value=9.2e-06 Score=77.07 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=80.8
Q ss_pred hhHHHHHhcCCCCCceEEEecCCCCCC----CHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeE-Eec
Q 046077 260 EEEVIQWLDSKPRGSVLYVAFGSEVGP----TREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLI-IHA 334 (456)
Q Consensus 260 ~~~~~~~l~~~~~~~vv~v~~GS~~~~----~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~-~~~ 334 (456)
+++..+-++.. +++.|+|=+-+..+. ....+.++++.|++.+..++.+.+.... ++.++. -++. ...
T Consensus 167 d~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~---~~~~~~----~~~~i~~~ 238 (335)
T PF04007_consen 167 DPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ---RELFEK----YGVIIPPE 238 (335)
T ss_pred ChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch---hhHHhc----cCccccCC
Confidence 34555666633 456888877664431 2355667899999888774444433211 111111 1222 224
Q ss_pred ccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHH
Q 046077 335 WAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIER 414 (456)
Q Consensus 335 ~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 414 (456)
-++...+|.+++ ++|+-|| ....||...|+|.|.+ +.++-...-+.+.++ |. .. ...+.+++.+.++.
T Consensus 239 ~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~-----~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 239 PVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LY-----HSTDPDEIVEYVRK 306 (335)
T ss_pred CCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eE-----ecCCHHHHHHHHHH
Confidence 455557886666 9999887 5677999999999986 444433444556645 55 33 23566777775554
Q ss_pred Hh
Q 046077 415 LM 416 (456)
Q Consensus 415 ~l 416 (456)
.+
T Consensus 307 ~~ 308 (335)
T PF04007_consen 307 NL 308 (335)
T ss_pred hh
Confidence 43
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.69 E-value=7.5e-06 Score=79.49 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=84.7
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCH-HHhhcccCc
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQ-ALILNHIST 347 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~-~~~l~h~~~ 347 (456)
++.+++..|+..... .+.+.+.+..+.+. +.+++ ++|.+.. +.+-..........++.+.++..+ ..++. .+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~-ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~a 267 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLL-LVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQ--AM 267 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEE-EEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hc
Confidence 346677788876544 45555555555443 33433 3443321 111111111222457888887544 34664 45
Q ss_pred ceEEecC----CchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 046077 348 GGFLSHC----GWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKT 423 (456)
Q Consensus 348 ~~~I~hg----G~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 423 (456)
+++|+-+ -.+++.||+++|+|+|+....+. ...++ . +.|.... .-+++++.++|.++++|++.++
T Consensus 268 di~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~-~-~~~~~~~-----~~~~~~~a~~i~~l~~~~~~~~ 336 (358)
T cd03812 268 DVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLT-D-LVKFLSL-----DESPEIWAEEILKLKSEDRRER 336 (358)
T ss_pred CEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhc-c-CccEEeC-----CCCHHHHHHHHHHHHhCcchhh
Confidence 5777643 35789999999999998765443 33444 4 5665552 2357999999999999988776
Q ss_pred HHHHH
Q 046077 424 RAAIL 428 (456)
Q Consensus 424 ~a~~l 428 (456)
+....
T Consensus 337 ~~~~~ 341 (358)
T cd03812 337 SSESI 341 (358)
T ss_pred hhhhh
Confidence 55443
No 87
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.64 E-value=3.2e-05 Score=82.82 Aligned_cols=175 Identities=16% Similarity=0.208 Sum_probs=97.0
Q ss_pred hHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCC-CcCc-------chhhh----
Q 046077 261 EEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEES-----PGPFIWVVQPGSE-EYMP-------HDLDN---- 323 (456)
Q Consensus 261 ~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~-~~~~-------~~~~~---- 323 (456)
.++..|+.. ++++ ++++.|.....+ .+..+++++... ...+.+++|.+.. +.+. ..+..
T Consensus 468 ~~l~r~~~~-pdkp-vIL~VGRL~p~K--Gi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~ 543 (1050)
T TIGR02468 468 SEIMRFFTN-PRKP-MILALARPDPKK--NITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDK 543 (1050)
T ss_pred HHHHhhccc-CCCc-EEEEEcCCcccc--CHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHH
Confidence 356667654 3443 455567766543 333344444332 1245455664321 0110 01111
Q ss_pred hhCCCCeEEecccCHHHh---hccc--CcceEEecC---Cc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEE
Q 046077 324 RVSNRGLIIHAWAPQALI---LNHI--STGGFLSHC---GW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLR 394 (456)
Q Consensus 324 ~~~~~~v~~~~~vp~~~~---l~h~--~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~ 394 (456)
.....+|.+.+++++.++ +..+ ..++||.-+ |. .++.||+++|+|+|.-...+ ....++ .-.-|+.
T Consensus 544 lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~-~g~nGlL 618 (1050)
T TIGR02468 544 YDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHR-VLDNGLL 618 (1050)
T ss_pred hCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhc-cCCcEEE
Confidence 112356888888887653 3222 225777753 43 58889999999999986543 222333 3245877
Q ss_pred EecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 395 VTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 395 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
+. .-+.++|+++|.++++|++.++++.+.+.+.... -+-...++++++.+
T Consensus 619 Vd-----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~--FSWe~ia~~yl~~i 668 (1050)
T TIGR02468 619 VD-----PHDQQAIADALLKLVADKQLWAECRQNGLKNIHL--FSWPEHCKTYLSRI 668 (1050)
T ss_pred EC-----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHH
Confidence 74 3478999999999999987666665554433222 24444444444443
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.64 E-value=3.3e-05 Score=75.68 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=89.3
Q ss_pred CceEEEecCCCCCCC-HHHHHHHHHHHHhC------CCCEEEEEcCCCCCcCcchhhhhh----CCCCeEEecccCH-HH
Q 046077 273 GSVLYVAFGSEVGPT-REEYRELAGALEES------PGPFIWVVQPGSEEYMPHDLDNRV----SNRGLIIHAWAPQ-AL 340 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~-~~~~~~~~~al~~~------~~~~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~vp~-~~ 340 (456)
.+.++++.|...... .+.+.+.+..+.+. +.+++ ++|.+.. .+.+.... ...++.+.++..+ ..
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~-i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 268 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLV-IVGDGPA---RGACEQMVRAAGLAHLVWLPGERDDVPA 268 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEE-EecCCch---HHHHHHHHHHcCCcceEEEcCCcCCHHH
Confidence 347778888877544 33333333333222 23333 3444321 12232221 1244666665543 35
Q ss_pred hhcccCcceEEe--c--CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh
Q 046077 341 ILNHISTGGFLS--H--CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM 416 (456)
Q Consensus 341 ~l~h~~~~~~I~--h--gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l 416 (456)
++..+ +++|. + |-..++.||+++|+|+|+....+ +...++ .-..|..+. .-+.+++.++|.+++
T Consensus 269 ~~~~a--di~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~-~~~~g~~~~-----~~d~~~la~~i~~l~ 336 (374)
T TIGR03088 269 LMQAL--DLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQ-HGVTGALVP-----PGDAVALARALQPYV 336 (374)
T ss_pred HHHhc--CEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhc-CCCceEEeC-----CCCHHHHHHHHHHHH
Confidence 66444 46763 2 33468999999999999976543 344555 324677773 347899999999999
Q ss_pred CCHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHH
Q 046077 417 SDEEMKTRAAILQVK-FEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 417 ~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~l 451 (456)
+|++.++...+-+.+ +.+. -+....++++.+..
T Consensus 337 ~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~y 370 (374)
T TIGR03088 337 SDPAARRAHGAAGRARAEQQ--FSINAMVAAYAGLY 370 (374)
T ss_pred hCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 988655444333322 2222 25555555555444
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.63 E-value=4.4e-06 Score=81.32 Aligned_cols=319 Identities=15% Similarity=0.103 Sum_probs=165.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEcCCCCcCC-CCCCCC--CCCCeEEE-ecCCCCC--CCCCCchHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSR-NYHTTLIIPSILVSA-IPPSFT--QYPRTRTT-QITSSGR--PMPPSDPLSQ 75 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~~~~~~~-~~~~~~--~~~~i~~~-~~~~~~~--~~~~~~~~~~ 75 (456)
++|++++ ++.-...-+-.+.++|.+. +.++.++.+....+. ...... ...++... .++.... ..........
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMG 79 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHH
Confidence 3566555 7777777777788888874 788887776543321 100000 00112110 1111111 1122244555
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCcEEE--ecCC-cccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCccc
Q 046077 76 QAAKDLEANLASRSENPDFPAPLCAI--VDFQ-VGWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRL 152 (456)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~pD~vI--~D~~-~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (456)
.....+.+++++. +||+|| +|.. +..+..+|..+|||++-+.-. + .
T Consensus 80 ~~~~~~~~~~~~~-------~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG----------------------~--r 128 (365)
T TIGR03568 80 LTIIGFSDAFERL-------KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG----------------------E--V 128 (365)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC----------------------c--c
Confidence 6677788888887 999998 5543 357789999999999954111 0 0
Q ss_pred CCCCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccCCe-EEEEcCCccccHHHHHHHHh-hc-CCCEeeec
Q 046077 153 IPGLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEGSI-ALMFNTCDDLDGLFIKYMAD-QI-GIPAWGVG 229 (456)
Q Consensus 153 ~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~le~~~~~~~~~-~~-~~~v~~vG 229 (456)
-.|.+. ...+ ....+.. ..+..+ ..+.+.+.+ .. +.+++.+|
T Consensus 129 s~~~~e---E~~r---------------------------~~i~~la~l~f~~t-----~~~~~~L~~eg~~~~~i~~tG 173 (365)
T TIGR03568 129 TEGAID---ESIR---------------------------HAITKLSHLHFVAT-----EEYRQRVIQMGEDPDRVFNVG 173 (365)
T ss_pred CCCCch---HHHH---------------------------HHHHHHHhhccCCC-----HHHHHHHHHcCCCCCcEEEEC
Confidence 000000 0000 0001111 111111 222222221 11 23577777
Q ss_pred ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCC--C-CCHHHHHHHHHHHHhCCCCEE
Q 046077 230 LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEV--G-PTREEYRELAGALEESPGPFI 306 (456)
Q Consensus 230 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~--~-~~~~~~~~~~~al~~~~~~~i 306 (456)
-..-+... .. . .....++.+.++-.++++.++|++=... . ...+.+..+++++.+.+.+++
T Consensus 174 ~~~iD~l~------------~~---~-~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~ 237 (365)
T TIGR03568 174 SPGLDNIL------------SL---D-LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYI 237 (365)
T ss_pred CcHHHHHH------------hh---h-ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCE
Confidence 54432100 00 0 0123344444443334468888885443 2 225778889999988876665
Q ss_pred EEEcCCCC--CcCcchhhhhhC-CCCeEEecccC---HHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhh
Q 046077 307 WVVQPGSE--EYMPHDLDNRVS-NRGLIIHAWAP---QALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYF 380 (456)
Q Consensus 307 ~~~~~~~~--~~~~~~~~~~~~-~~~v~~~~~vp---~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~ 380 (456)
++...+.. ....+.+..... .+++.+.+.++ ...++++++ ++|+.++.|. .||.+.|+|+|.+- +.+.
T Consensus 238 vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~e 311 (365)
T TIGR03568 238 FTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQK 311 (365)
T ss_pred EEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCch
Confidence 55432211 011122222222 45788887655 445675555 9999986666 89999999999873 2221
Q ss_pred HHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 381 NAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 381 na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
-++ . |..+.+- ..++++|.+++++++ ++++
T Consensus 312 ---~~~-~-g~nvl~v-----g~~~~~I~~a~~~~~-~~~~ 341 (365)
T TIGR03568 312 ---GRL-R-ADSVIDV-----DPDKEEIVKAIEKLL-DPAF 341 (365)
T ss_pred ---hhh-h-cCeEEEe-----CCCHHHHHHHHHHHh-ChHH
Confidence 112 3 4443321 357899999999955 4443
No 90
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.62 E-value=0.00015 Score=75.90 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCeEEeccc-CH---HHhhcc-c-CcceEEecC---C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEec
Q 046077 328 RGLIIHAWA-PQ---ALILNH-I-STGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTD 397 (456)
Q Consensus 328 ~~v~~~~~v-p~---~~~l~h-~-~~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~ 397 (456)
.++.+.++. +. .+++.+ + .+++||.-+ | -.|+.||+++|+|+|+.-..+ .+..+++. .-|..++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg-~tGfLVd- 692 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDG-VSGFHID- 692 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEeC-
Confidence 568777764 32 234432 2 245777543 3 358999999999999875543 44455532 4688884
Q ss_pred CCCCcccHHHHHHHHHHHh----CCHHHHHHHHHHH
Q 046077 398 DLSETVKKGDIAEGIERLM----SDEEMKTRAAILQ 429 (456)
Q Consensus 398 ~~~~~~~~~~l~~~i~~~l----~~~~~~~~a~~l~ 429 (456)
.-++++++++|.+++ +|++.+++..+-+
T Consensus 693 ----p~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a 724 (784)
T TIGR02470 693 ----PYHGEEAAEKIVDFFEKCDEDPSYWQKISQGG 724 (784)
T ss_pred ----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 347788999998876 6877666655543
No 91
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.61 E-value=1.1e-05 Score=81.18 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=106.4
Q ss_pred ccccHHHHHHHHhhcCCCEeeec-ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCC
Q 046077 207 DDLDGLFIKYMADQIGIPAWGVG-LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVG 285 (456)
Q Consensus 207 ~~le~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~ 285 (456)
..+|.++.+ ..|.++.||| |++... +...+..+..+-++..+++++|-+--||-.+
T Consensus 369 fPFE~~~y~----~~gv~v~yVGHPL~d~i-------------------~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~ 425 (608)
T PRK01021 369 LPFEQNLFK----DSPLRTVYLGHPLVETI-------------------SSFSPNLSWKEQLHLPSDKPIVAAFPGSRRG 425 (608)
T ss_pred CccCHHHHH----hcCCCeEEECCcHHhhc-------------------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHH
Confidence 445566443 3467899999 776532 1112334455555555567799999998755
Q ss_pred CCHHHHHHHHHHHH--hC--CCCEEEEEcCCCCCcCcchhhhhhCCCC---eEEecccCHHHhhcccCcceEEecCCchh
Q 046077 286 PTREEYRELAGALE--ES--PGPFIWVVQPGSEEYMPHDLDNRVSNRG---LIIHAWAPQALILNHISTGGFLSHCGWNS 358 (456)
Q Consensus 286 ~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~vp~~~~l~h~~~~~~I~hgG~gt 358 (456)
.-...+..++++.+ .. +.++++...+.. ..+.+.+.....+ +.+..--...+++ .+||+.+.-+|. .
T Consensus 426 EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---~~~~i~~~~~~~~~~~~~ii~~~~~~~~m--~aaD~aLaaSGT-a 499 (608)
T PRK01021 426 DILRNLTIQVQAFLASSLASTHQLLVSSANPK---YDHLILEVLQQEGCLHSHIVPSQFRYELM--RECDCALAKCGT-I 499 (608)
T ss_pred HHHHHHHHHHHHHHHHHhccCeEEEEecCchh---hHHHHHHHHhhcCCCCeEEecCcchHHHH--HhcCeeeecCCH-H
Confidence 33455555666665 32 345554332211 1122233222111 2222100124567 455688888876 4
Q ss_pred HHHHHHhCCCeecc-CCccchhhHHHHHHH-----------HhccEEEEecCC-CCcccHHHHHHHHHHHhCCHHHHHHH
Q 046077 359 TMEAIVHGVPFLAW-PIRGDQYFNAKLVVN-----------YIKVGLRVTDDL-SETVKKGDIAEGIERLMSDEEMKTRA 425 (456)
Q Consensus 359 ~~e~l~~GvP~v~~-P~~~dQ~~na~~~~~-----------~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~a 425 (456)
+.|+...|+|||++ =...=-..-|+++.+ -+|=.+..+.-+ .+..+++.|.+++ ++|+|++.+++.
T Consensus 500 TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~ 578 (608)
T PRK01021 500 VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQ 578 (608)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHH
Confidence 56888999999987 222222344666663 111111111110 2467899999997 788887655444
Q ss_pred HHHHHHHHh
Q 046077 426 AILQVKFEQ 434 (456)
Q Consensus 426 ~~l~~~~~~ 434 (456)
++--+++++
T Consensus 579 ~~~l~~lr~ 587 (608)
T PRK01021 579 KDACRDLYQ 587 (608)
T ss_pred HHHHHHHHH
Confidence 444344433
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.56 E-value=1.6e-05 Score=78.65 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=91.0
Q ss_pred eEEEecCCCCCCC-HHHHHH----HHHHHHh--CCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHH-HhhcccC
Q 046077 275 VLYVAFGSEVGPT-REEYRE----LAGALEE--SPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQA-LILNHIS 346 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~----~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~-~~l~h~~ 346 (456)
.+++..|++.... .+.+.. +...+.+ .+.++ +++|.+.. +.........|+.+.+++++. .++. .
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l-~ivG~g~~----~~~~~l~~~~~V~~~G~v~~~~~~~~--~ 297 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEF-YIVGAKPS----PAVRALAALPGVTVTGSVADVRPYLA--H 297 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEE-EEECCCCh----HHHHHhccCCCeEEeeecCCHHHHHH--h
Confidence 3455678876654 333332 2223332 23444 45555421 233333345689999999854 3564 4
Q ss_pred cceEEe--c--CCch-hHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 347 TGGFLS--H--CGWN-STMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 347 ~~~~I~--h--gG~g-t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
++++|. + .|.+ .+.||+++|+|+|+.+...+.. .+ .-|.|+.+. -+.+++.++|.++++|++.
T Consensus 298 adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~-~~~~g~lv~------~~~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 298 AAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DA-LPGAELLVA------ADPADFAAAILALLANPAE 365 (397)
T ss_pred CCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cc-cCCcceEeC------CCHHHHHHHHHHHHcCHHH
Confidence 446763 2 3443 6999999999999987643321 12 226777662 4789999999999999876
Q ss_pred HHHHHHHHHHH-HhcCCCChHHHHHHHHHHH
Q 046077 422 KTRAAILQVKF-EQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 422 ~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~l 451 (456)
++++.+-+.+. .+. -+-...++++.+.+
T Consensus 366 ~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l 394 (397)
T TIGR03087 366 REELGQAARRRVLQH--YHWPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 66655554443 222 24445555554433
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=98.51 E-value=0.00012 Score=71.72 Aligned_cols=116 Identities=11% Similarity=-0.077 Sum_probs=65.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC--CCCCch---HHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNY-HTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP--MPPSDP---LSQQ 76 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~---~~~~ 76 (456)
.++.++..|-.|.-..+..++..|+++|| +|++++.+..-...+. ....++..+.++..... ...... ....
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~--~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~ 82 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL--LNHPSIHIHLMVQPRLLQRLPRVLYALALLLK 82 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH--hcCCcEEEEECCCcccccccccchHHHHHHHH
Confidence 36777777999999999999999999876 7999986532111011 11236888888652111 111111 1111
Q ss_pred HHHHHHHHHhhh--cCCCCCCCCcEEEec-CCcc----cHHHHHHHcCCCeEEEe
Q 046077 77 AAKDLEANLASR--SENPDFPAPLCAIVD-FQVG----WTKAIFWKFNIPVVSLF 124 (456)
Q Consensus 77 ~~~~~~~ll~~~--~~~~~~~~pD~vI~D-~~~~----~~~~~A~~lgIP~v~~~ 124 (456)
....+..++..+ ... +||+|++. .... .+..+++..++|++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~----~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~ 133 (371)
T PLN02275 83 VAIQFLMLLWFLCVKIP----RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDW 133 (371)
T ss_pred HHHHHHHHHHHHHhhCC----CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 111222222111 111 89999864 2221 33456778899998753
No 94
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.49 E-value=0.00016 Score=71.62 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=95.9
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCE-EEEEcCCCCCcCcchhhhh----hCCCCeEEecccCHHH---hhcc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEESPGPF-IWVVQPGSEEYMPHDLDNR----VSNRGLIIHAWAPQAL---ILNH 344 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~vp~~~---~l~h 344 (456)
+..+++.|...... .+.+.+.+..+.+.+..+ ++++|.+.. .+.++.. ...+++.+.+|+|+.+ ++
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~---~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l-- 296 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW---ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAML-- 296 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh---HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHH--
Confidence 45566678776543 333444444444433333 334454321 1223222 2246799999999765 45
Q ss_pred cCcceEEecC---------Cc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHH
Q 046077 345 ISTGGFLSHC---------GW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIER 414 (456)
Q Consensus 345 ~~~~~~I~hg---------G~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 414 (456)
..++++|.-+ |. .++.||+++|+|+|+....+ ....++ .-..|..++ .-+.+++.++|.+
T Consensus 297 ~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~-~~~~G~lv~-----~~d~~~la~ai~~ 366 (406)
T PRK15427 297 DDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVE-ADKSGWLVP-----ENDAQALAQRLAA 366 (406)
T ss_pred HhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhc-CCCceEEeC-----CCCHHHHHHHHHH
Confidence 4555777532 44 56899999999999975543 333455 324687773 3478999999999
Q ss_pred HhC-CHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHh
Q 046077 415 LMS-DEEMKTRAAILQVKF-EQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 415 ~l~-~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~l~ 452 (456)
+++ |++.++++.+-+++. .+. -+....++++.+.+.
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQ 404 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHh
Confidence 999 887555544444332 232 255566666665554
No 95
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.47 E-value=3.9e-06 Score=80.69 Aligned_cols=198 Identities=21% Similarity=0.227 Sum_probs=106.8
Q ss_pred ccccHHHHHHHHhhcCCCEeeec-ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCCC
Q 046077 207 DDLDGLFIKYMADQIGIPAWGVG-LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEVG 285 (456)
Q Consensus 207 ~~le~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~~ 285 (456)
..||.++++ ..|.++.||| |++... +......+..+.+ -.+++++|-+--||-.+
T Consensus 141 fPFE~~~y~----~~g~~~~~VGHPl~d~~-------------------~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~ 196 (373)
T PF02684_consen 141 FPFEPEFYK----KHGVPVTYVGHPLLDEV-------------------KPEPDRAEAREKL-LDPDKPIIALLPGSRKS 196 (373)
T ss_pred CcccHHHHh----ccCCCeEEECCcchhhh-------------------ccCCCHHHHHHhc-CCCCCcEEEEeCCCCHH
Confidence 345555433 3456799999 776532 1111233444444 44566799999998754
Q ss_pred CCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCcCcchhhhhh--CCCCeEEe-cccCHHHhhcccCcceEEecCCch
Q 046077 286 PTREEYRELAGALEE---S--PGPFIWVVQPGSEEYMPHDLDNRV--SNRGLIIH-AWAPQALILNHISTGGFLSHCGWN 357 (456)
Q Consensus 286 ~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~vp~~~~l~h~~~~~~I~hgG~g 357 (456)
.-...+..++++.+. . +.++++.+.+... .+.+.... ...++.+. ..-.-.+++. .+++.+.-+|-
T Consensus 197 EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~m~--~ad~al~~SGT- 270 (373)
T PF02684_consen 197 EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH---EELIEEILAEYPPDVSIVIIEGESYDAMA--AADAALAASGT- 270 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH---HHHHHHHHHhhCCCCeEEEcCCchHHHHH--hCcchhhcCCH-
Confidence 333333444554433 3 4455554433211 11111111 11222221 1123334564 44477777765
Q ss_pred hHHHHHHhCCCeecc-CCccchhhHHHHHHHHhcc-EE-------EEec-CCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 046077 358 STMEAIVHGVPFLAW-PIRGDQYFNAKLVVNYIKV-GL-------RVTD-DLSETVKKGDIAEGIERLMSDEEMKTRAAI 427 (456)
Q Consensus 358 t~~e~l~~GvP~v~~-P~~~dQ~~na~~~~~~~G~-g~-------~~~~-~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 427 (456)
.+.|+..+|+|||++ -...=-...|+++.+ ... |+ .+-+ -..+..+++.|.+++.++++|++.++..+.
T Consensus 271 aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 271 ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 456888999999988 333334455677752 232 11 0100 013578999999999999999877666666
Q ss_pred HHHHHHhc
Q 046077 428 LQVKFEQG 435 (456)
Q Consensus 428 l~~~~~~~ 435 (456)
..+.+++.
T Consensus 350 ~~~~~~~~ 357 (373)
T PF02684_consen 350 LFREIRQL 357 (373)
T ss_pred HHHHHHHh
Confidence 66666554
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.37 E-value=6e-06 Score=79.56 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=79.6
Q ss_pred CCCceEEEecCCCCCCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhC-CCCeEEecccC---HHHh
Q 046077 271 PRGSVLYVAFGSEVGPT-R---EEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVS-NRGLIIHAWAP---QALI 341 (456)
Q Consensus 271 ~~~~vv~v~~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~vp---~~~~ 341 (456)
.+++.++|++=...... + +++.+++++|.+. +.++||...+.... ...+.+... -+|+++...++ ...+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~--~~~i~~~l~~~~~v~~~~~l~~~~~l~l 255 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG--SDIIIEKLKKYDNVRLIEPLGYEEYLSL 255 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH--HHHHHHHHTT-TTEEEE----HHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH--HHHHHHHhcccCCEEEECCCCHHHHHHH
Confidence 56679999985544444 3 4555667777766 77888888743210 011121111 14788887665 4457
Q ss_pred hcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 342 LNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 342 l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
|++++ ++|+.+| |-.-||.++|+|+|.+=..++.+ .-+. . |..+.+ ..+.++|.+++++++++.+.
T Consensus 256 l~~a~--~vvgdSs-GI~eEa~~lg~P~v~iR~~geRq---e~r~-~-~~nvlv------~~~~~~I~~ai~~~l~~~~~ 321 (346)
T PF02350_consen 256 LKNAD--LVVGDSS-GIQEEAPSLGKPVVNIRDSGERQ---EGRE-R-GSNVLV------GTDPEAIIQAIEKALSDKDF 321 (346)
T ss_dssp HHHES--EEEESSH-HHHHHGGGGT--EEECSSS-S-H---HHHH-T-TSEEEE------TSSHHHHHHHHHHHHH-HHH
T ss_pred Hhcce--EEEEcCc-cHHHHHHHhCCeEEEecCCCCCH---HHHh-h-cceEEe------CCCHHHHHHHHHHHHhChHH
Confidence 76666 9999999 55559999999999993222222 2233 3 667665 26899999999999977444
Q ss_pred HHH
Q 046077 422 KTR 424 (456)
Q Consensus 422 ~~~ 424 (456)
..+
T Consensus 322 ~~~ 324 (346)
T PF02350_consen 322 YRK 324 (346)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 97
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.35 E-value=0.0036 Score=61.49 Aligned_cols=112 Identities=19% Similarity=0.146 Sum_probs=71.8
Q ss_pred CCeEEecccCHHH---hhcccCcceEEecCCc-----hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCC
Q 046077 328 RGLIIHAWAPQAL---ILNHISTGGFLSHCGW-----NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL 399 (456)
Q Consensus 328 ~~v~~~~~vp~~~---~l~h~~~~~~I~hgG~-----gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~ 399 (456)
.++.+.+++|+.+ ++ ..++++|..+.+ .++.||+++|+|+|+....+ +...++ .-..|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~--~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~-~~~~G~~l~--- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYY--PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVL-EGITGYHLA--- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHH--HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcc-cCCceEEEe---
Confidence 5688899998654 46 455577764432 57889999999999986543 334455 324676452
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 400 SETVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 400 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
...+.+++.++|.++++|++.++..++-++...+. -+-...++++.+.+.
T Consensus 327 -~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~--fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 327 -EPMTSDSIISDINRTLADPELTQIAEQAKDFVFSK--YSWEGVTQRFEEQIH 376 (380)
T ss_pred -CCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 23478999999999999987543333333333222 255556666665554
No 98
>PLN00142 sucrose synthase
Probab=98.35 E-value=0.00037 Score=73.18 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCeEEecc----cCHHHhhcc-c-CcceEEec---CCch-hHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEec
Q 046077 328 RGLIIHAW----APQALILNH-I-STGGFLSH---CGWN-STMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTD 397 (456)
Q Consensus 328 ~~v~~~~~----vp~~~~l~h-~-~~~~~I~h---gG~g-t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~ 397 (456)
.++.+.++ ++..++... . ++++||.- =|.| ++.||+++|+|+|+....+ ....++ .-.-|..++.
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~-dG~tG~LV~P 716 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIV-DGVSGFHIDP 716 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhc-CCCcEEEeCC
Confidence 45665543 334444421 1 34577764 3444 8999999999999875543 444555 4145887743
Q ss_pred CCCCcccHHHHHHHHHHH----hCCHHHHHHHHHHH
Q 046077 398 DLSETVKKGDIAEGIERL----MSDEEMKTRAAILQ 429 (456)
Q Consensus 398 ~~~~~~~~~~l~~~i~~~----l~~~~~~~~a~~l~ 429 (456)
-+.++++++|.++ ++|++.+++..+-+
T Consensus 717 -----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 717 -----YHGDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4677888887654 47887776665554
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.31 E-value=0.0011 Score=64.86 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=94.5
Q ss_pred HHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCCC-c-Ccchhhh----hhCCCCeEEec
Q 046077 264 IQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSEE-Y-MPHDLDN----RVSNRGLIIHA 334 (456)
Q Consensus 264 ~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~-~-~~~~~~~----~~~~~~v~~~~ 334 (456)
...+...+++ .+++..|.+.... .+.+.+++..+.+. +.++ +++|.+... . ..+.+.. .....++.+.+
T Consensus 181 ~~~~~~~~~~-~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l-~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (372)
T cd03792 181 LEKYGIDPER-PYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQL-VLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLT 258 (372)
T ss_pred HHHhCCCCCC-cEEEEEeccccccCcHHHHHHHHHHHhhCCCCEE-EEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEe
Confidence 3334333333 5566778776544 34444444444332 3444 455544210 0 0011111 11234677777
Q ss_pred cc--CHH---HhhcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccH
Q 046077 335 WA--PQA---LILNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKK 405 (456)
Q Consensus 335 ~v--p~~---~~l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~ 405 (456)
+. ++. .++ ..+++++.-+- ..++.||+++|+|+|+....+ ....+.+. ..|..+. +.
T Consensus 259 ~~~~~~~~~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~-------~~ 324 (372)
T cd03792 259 LPPVSDLEVNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD-------TV 324 (372)
T ss_pred cCCCCHHHHHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-------Cc
Confidence 76 433 345 45568886543 348999999999999876543 22344422 5676552 45
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHh
Q 046077 406 GDIAEGIERLMSDEEMKTRAAILQVKF-EQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 406 ~~l~~~i~~~l~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~l~ 452 (456)
+.+..+|.++++|++.++.+.+.+.+. .+. -+-...++++++.++
T Consensus 325 ~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~~~ 370 (372)
T cd03792 325 EEAAVRILYLLRDPELRRKMGANAREHVREN--FLITRHLKDYLYLIS 370 (372)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHH
Confidence 678889999999988777666555443 222 255566666666554
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.29 E-value=0.00018 Score=71.53 Aligned_cols=80 Identities=21% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCCeEEecccCHHH---hhcccCcceEEecC---Cc-hhHHHHHHhCCCeeccCCccchhhHHHHHH---HHhccEEEEe
Q 046077 327 NRGLIIHAWAPQAL---ILNHISTGGFLSHC---GW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVV---NYIKVGLRVT 396 (456)
Q Consensus 327 ~~~v~~~~~vp~~~---~l~h~~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~---~~~G~g~~~~ 396 (456)
.+++.+.+++|+.+ +|..+ +++|+-. |. .++.|++++|+|.|+.-..+.-. ..++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~a--dv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTA--SIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhC--eEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCCC-CceEEe-
Confidence 35799999998764 56444 4666532 22 47889999999999865432111 1111 12 467654
Q ss_pred cCCCCcccHHHHHHHHHHHhCCH
Q 046077 397 DDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
.+++++.++|.++++++
T Consensus 377 ------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ------STAEEYAEAIEKILSLS 393 (419)
T ss_pred ------CCHHHHHHHHHHHHhCC
Confidence 27899999999999864
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.28 E-value=0.00031 Score=69.75 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=70.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHH---h-C-CCCEEEEEcCCCCCcCcchhhhhhCC---CCeEEecccCHHHhhcccCc
Q 046077 276 LYVAFGSEVGPTREEYRELAGALE---E-S-PGPFIWVVQPGSEEYMPHDLDNRVSN---RGLIIHAWAPQALILNHIST 347 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~~~~al~---~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~vp~~~~l~h~~~ 347 (456)
+.+..|-....+ .+..+++++. + . +.+ ++++|.+.. .+.++..... ...++.++.+..+++ .+.
T Consensus 230 ~~l~vGRL~~eK--~~~~Li~a~~~l~~~~~~~~-l~ivGdGp~---~~~L~~~a~~l~l~~~vf~G~~~~~~~~--~~~ 301 (462)
T PLN02846 230 GAYYIGKMVWSK--GYKELLKLLHKHQKELSGLE-VDLYGSGED---SDEVKAAAEKLELDVRVYPGRDHADPLF--HDY 301 (462)
T ss_pred EEEEEecCcccC--CHHHHHHHHHHHHhhCCCeE-EEEECCCcc---HHHHHHHHHhcCCcEEEECCCCCHHHHH--HhC
Confidence 445567766544 3333444433 2 2 333 555666532 1233332221 122356677777777 445
Q ss_pred ceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH
Q 046077 348 GGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 348 ~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
|+||.-+- ..++.||+++|+|+|+.-..+. ..+. .-+-|... -+.+++.+++.++|+++
T Consensus 302 DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~-~~~ng~~~-------~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 302 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFK-QFPNCRTY-------DDGKGFVRATLKALAEE 364 (462)
T ss_pred CEEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceee-cCCceEec-------CCHHHHHHHHHHHHccC
Confidence 69988753 3578899999999999865432 3333 21344333 26789999999999753
No 102
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.22 E-value=4e-05 Score=74.37 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=85.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCcceEEe
Q 046077 276 LYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHISTGGFLS 352 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~~~~I~ 352 (456)
.++..|..... ..+..++++++..+.++++ +|.+.. .+.+.. ...+|+.+.+++|+.+ ++..++ ++|.
T Consensus 197 ~il~~G~~~~~--K~~~~li~a~~~~~~~l~i-vG~g~~---~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad--~~v~ 267 (351)
T cd03804 197 YYLSVGRLVPY--KRIDLAIEAFNKLGKRLVV-IGDGPE---LDRLRA-KAGPNVTFLGRVSDEELRDLYARAR--AFLF 267 (351)
T ss_pred EEEEEEcCccc--cChHHHHHHHHHCCCcEEE-EECChh---HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCC--EEEE
Confidence 34556776643 3455566777777766554 444321 122222 3357899999999854 564455 5663
Q ss_pred --cCCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH-HHHHHHHHH
Q 046077 353 --HCGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE-EMKTRAAIL 428 (456)
Q Consensus 353 --hgG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l 428 (456)
.-|. .++.|++++|+|+|.....+ ....+++. +.|+.+. .-+.+++.++|.++++|+ .+++++++.
T Consensus 268 ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~-----~~~~~~la~~i~~l~~~~~~~~~~~~~~ 337 (351)
T cd03804 268 PAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFE-----EQTVESLAAAVERFEKNEDFDPQAIRAH 337 (351)
T ss_pred CCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeC-----CCCHHHHHHHHHHHHhCcccCHHHHHHH
Confidence 3344 45779999999999986543 22334422 5788773 247888999999999887 455555544
Q ss_pred HH
Q 046077 429 QV 430 (456)
Q Consensus 429 ~~ 430 (456)
++
T Consensus 338 ~~ 339 (351)
T cd03804 338 AE 339 (351)
T ss_pred HH
Confidence 43
No 103
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=0.0002 Score=67.87 Aligned_cols=332 Identities=14% Similarity=0.064 Sum_probs=178.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEcCCCCcC-CCCCCCCCCCCeEEEecCCCC-CCCCCCchHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRN-YHTTLIIPSILVS-AIPPSFTQYPRTRTTQITSSG-RPMPPSDPLSQQA 77 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~G-h~Vt~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~ 77 (456)
|++.-+++-+|+.=.++-+-.|.+++.+.+ .+..++.+....+ .+-...-..-++....+.... .+.....+....+
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~ 80 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNI 80 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHH
Confidence 766566666799999999999999999986 6666665554331 111110000011110000000 0123345566677
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEE--ecCCc-ccHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhccCCCCCCCcccCC
Q 046077 78 AKDLEANLASRSENPDFPAPLCAI--VDFQV-GWTKAIFWKFNIPVVSLFTFGACAAAMEWAAWKLDATDIKPGETRLIP 154 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI--~D~~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (456)
...+.+++.+. +||+|+ +|-.. ..+..+|..++||+.-.- .
T Consensus 81 i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE-----------------------------A 124 (383)
T COG0381 81 IEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE-----------------------------A 124 (383)
T ss_pred HHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEe-----------------------------c
Confidence 88889999988 999987 67554 455889999999988651 1
Q ss_pred CCCCCccCCccccccccCCCCCCCCCCCCCCCCCCCCcccccC-CeEEEEcCCccccHHHHHHHH-hhcCC-CEeeeccc
Q 046077 155 GLPEEMALTYSDIRRKSSVPSRGGRGGPPKPGDKPPWVPEIEG-SIALMFNTCDDLDGLFIKYMA-DQIGI-PAWGVGLL 231 (456)
Q Consensus 155 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~le~~~~~~~~-~~~~~-~v~~vGp~ 231 (456)
|+-. .... +|+-++ | ..... ++..+..+ ..+.+++. ...++ .++.+|-.
T Consensus 125 GlRt---~~~~-~PEE~N-----------------R--~l~~~~S~~hfapt-----e~ar~nLl~EG~~~~~IfvtGnt 176 (383)
T COG0381 125 GLRT---GDLY-FPEEIN-----------------R--RLTSHLSDLHFAPT-----EIARKNLLREGVPEKRIFVTGNT 176 (383)
T ss_pred cccc---CCCC-CcHHHH-----------------H--HHHHHhhhhhcCCh-----HHHHHHHHHcCCCccceEEeCCh
Confidence 2110 0000 010000 0 00000 11112222 22333332 23333 47777755
Q ss_pred CccccccccccccccchhhhhhccCCCChhHHHHH-hcCCCCCceEEEecCCCCCCCHHHHHHHHH----HHHhC-CCCE
Q 046077 232 LPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQW-LDSKPRGSVLYVAFGSEVGPTREEYRELAG----ALEES-PGPF 305 (456)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~----al~~~-~~~~ 305 (456)
..+.- ...+ .......+...- +.. +.+..++|++=-..... +.+.++.+ .++.. +..+
T Consensus 177 ~iDal----------~~~~----~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~v 240 (383)
T COG0381 177 VIDAL----------LNTR----DRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIV 240 (383)
T ss_pred HHHHH----------HHHH----hhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceE
Confidence 43210 0000 000111122211 222 23448888763332222 33444444 44444 3444
Q ss_pred EEEEcCCCCCcCcch-hhhhhCCCCeEEec---ccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhH
Q 046077 306 IWVVQPGSEEYMPHD-LDNRVSNRGLIIHA---WAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFN 381 (456)
Q Consensus 306 i~~~~~~~~~~~~~~-~~~~~~~~~v~~~~---~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~n 381 (456)
|.-+... ....+- +......+++.+.+ |.+...+++++. +++|-+|. -.-||-..|+|++++=...+++.
T Consensus 241 iyp~H~~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE- 314 (383)
T COG0381 241 IYPVHPR--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTERPE- 314 (383)
T ss_pred EEeCCCC--hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCCCcc-
Confidence 4444332 111111 12222334566544 667778887777 99999874 45699999999999999999988
Q ss_pred HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHH
Q 046077 382 AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAIL 428 (456)
Q Consensus 382 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 428 (456)
+++ . |.-+.+ ..+.+.+.+++.+++++++..++++..
T Consensus 315 --~v~-a-gt~~lv------g~~~~~i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 315 --GVE-A-GTNILV------GTDEENILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred --cee-c-CceEEe------CccHHHHHHHHHHHhhChHHHHHHhcc
Confidence 444 4 666655 357899999999999998887766543
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00061 Score=71.30 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=80.7
Q ss_pred eEEEecCCCCCCC-HHHHHH-HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhh----CCCCeEEecccCHHH-hhcccCc
Q 046077 275 VLYVAFGSEVGPT-REEYRE-LAGALEESPGPFIWVVQPGSEEYMPHDLDNRV----SNRGLIIHAWAPQAL-ILNHIST 347 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~vp~~~-~l~h~~~ 347 (456)
.++++.|.+...+ .+.+.+ +...++..+.--++++|.+. ..+.+++.. ..++|.+.+|.++.. ++ ..+
T Consensus 518 ~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~---~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll--~aa 592 (694)
T PRK15179 518 FTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP---LLESVREFAQRLGMGERILFTGLSRRVGYWL--TQF 592 (694)
T ss_pred eEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc---chHHHHHHHHHcCCCCcEEEcCCcchHHHHH--Hhc
Confidence 4555667765444 333333 32333333322355566542 123333322 246788989987543 55 445
Q ss_pred ceEEe---cCCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh----CCH
Q 046077 348 GGFLS---HCGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM----SDE 419 (456)
Q Consensus 348 ~~~I~---hgG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l----~~~ 419 (456)
+++|. +-|. +++.||+++|+|+|+....+ ....++ .-..|+.+.. ++.+.+++.+++.+++ +++
T Consensus 593 Dv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~-dg~~GlLv~~---~d~~~~~La~aL~~ll~~l~~~~ 664 (694)
T PRK15179 593 NAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQ-EGVTGLTLPA---DTVTAPDVAEALARIHDMCAADP 664 (694)
T ss_pred CEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHcc-CCCCEEEeCC---CCCChHHHHHHHHHHHhChhccH
Confidence 57775 4454 68899999999999976533 344555 3146888753 3445556666665554 467
Q ss_pred HHHHHHHHHH
Q 046077 420 EMKTRAAILQ 429 (456)
Q Consensus 420 ~~~~~a~~l~ 429 (456)
++++++++..
T Consensus 665 ~l~~~ar~~a 674 (694)
T PRK15179 665 GIARKAADWA 674 (694)
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.16 E-value=0.0019 Score=65.30 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=76.0
Q ss_pred HHHHhcCCCCCceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhC--CCCeE-EecccCH
Q 046077 263 VIQWLDSKPRGSVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVS--NRGLI-IHAWAPQ 338 (456)
Q Consensus 263 ~~~~l~~~~~~~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~v~-~~~~vp~ 338 (456)
+.+.++..+++..+++..|...... .+.+.+.+..+.+.+.+++++ |.+.. .+.+.+..... +.++. +.+|-..
T Consensus 271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~-~~~~~l~~l~~~~~~~v~~~~g~~~~ 348 (466)
T PRK00654 271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDP-ELEEAFRALAARYPGKVGVQIGYDEA 348 (466)
T ss_pred HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcH-HHHHHHHHHHHHCCCcEEEEEeCCHH
Confidence 3444443322335666778776544 344444444443446666554 44321 11122222221 23443 3456322
Q ss_pred H--HhhcccCcceEEecC---Cch-hHHHHHHhCCCeeccCCcc--chhhHHHHHHHHhccEEEEecCCCCcccHHHHHH
Q 046077 339 A--LILNHISTGGFLSHC---GWN-STMEAIVHGVPFLAWPIRG--DQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAE 410 (456)
Q Consensus 339 ~--~~l~h~~~~~~I~hg---G~g-t~~e~l~~GvP~v~~P~~~--dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~ 410 (456)
. .++ ..+|++|.-+ |.| +.+||+++|+|.|+....+ |.-.+...-.+. +.|+.+. .-+++++.+
T Consensus 349 ~~~~~~--~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~-----~~d~~~la~ 420 (466)
T PRK00654 349 LAHRIY--AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD-----DFNAEDLLR 420 (466)
T ss_pred HHHHHH--hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC-----CCCHHHHHH
Confidence 2 345 5566888643 444 7889999999999875432 211110000112 6688774 347899999
Q ss_pred HHHHHhC
Q 046077 411 GIERLMS 417 (456)
Q Consensus 411 ~i~~~l~ 417 (456)
+|.++++
T Consensus 421 ~i~~~l~ 427 (466)
T PRK00654 421 ALRRALE 427 (466)
T ss_pred HHHHHHH
Confidence 9999875
No 106
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.16 E-value=0.0026 Score=62.37 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=81.3
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCcceE
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHISTGGF 350 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~~~~ 350 (456)
.+++.+|++.... .+.+.+++.. ..+.+++ .+|.+... .........+|+.+.+++|+.+ .+.+.+ ++
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~v-liG~~~~~---~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~D--v~ 277 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKA--RPDWSFV-LIGPVDVS---IDPSALLRLPNVHYLGPKPYKELPAYLAGFD--VA 277 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHH--CCCCEEE-EECCCcCc---cChhHhccCCCEEEeCCCCHHHHHHHHHhCC--EE
Confidence 4556678887522 2333333321 2245444 45543111 1122222347899999998665 465555 44
Q ss_pred Ee--------cCCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH-H
Q 046077 351 LS--------HCGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE-E 420 (456)
Q Consensus 351 I~--------hgG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-~ 420 (456)
|. .++. +.+.|++++|+|+|..++. ...+ ..+.++.+ .-+.+++.++|++++.++ .
T Consensus 278 l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~-~~~~~~~~------~~d~~~~~~ai~~~l~~~~~ 343 (373)
T cd04950 278 ILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRR-YEDEVVLI------ADDPEEFVAAIEKALLEDGP 343 (373)
T ss_pred ecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHh-hcCcEEEe------CCCHHHHHHHHHHHHhcCCc
Confidence 43 2232 4589999999999987632 2223 32333333 127899999999976543 2
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Q 046077 421 MKTRAAILQVKFEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 421 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
.+.+. ..+..++ .+=...++++.+.+.+
T Consensus 344 ~~~~~--~~~~~~~---~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 344 ARERR--RLRLAAQ---NSWDARAAEMLEALQE 371 (373)
T ss_pred hHHHH--HHHHHHH---CCHHHHHHHHHHHHHh
Confidence 22111 1112333 3556666677666544
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=0.0002 Score=67.64 Aligned_cols=215 Identities=18% Similarity=0.175 Sum_probs=116.7
Q ss_pred CccccHHHHHHHHhhcCCCEeeec-ccCccccccccccccccchhhhhhccCCCChhHHHHHhcCCCCCceEEEecCCCC
Q 046077 206 CDDLDGLFIKYMADQIGIPAWGVG-LLLPEQHWKSTSSLVRHCEITEQKRQSSCSEEEVIQWLDSKPRGSVLYVAFGSEV 284 (456)
Q Consensus 206 ~~~le~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~v~~GS~~ 284 (456)
+..+|+.+++ ..+-+..||| |+.... +...+.+.+.+-+....+++++.+--||-.
T Consensus 143 ilPFE~~~y~----k~g~~~~yVGHpl~d~i-------------------~~~~~r~~ar~~l~~~~~~~~lalLPGSR~ 199 (381)
T COG0763 143 ILPFEPAFYD----KFGLPCTYVGHPLADEI-------------------PLLPDREAAREKLGIDADEKTLALLPGSRR 199 (381)
T ss_pred ecCCCHHHHH----hcCCCeEEeCChhhhhc-------------------cccccHHHHHHHhCCCCCCCeEEEecCCcH
Confidence 3445666544 2333488888 655432 222345567777777777789999999976
Q ss_pred CCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCcCcchhhhhhC-CCCeEEecccCHHHhhcccCcceEEecCCchh
Q 046077 285 GPTREEYRELAGALEES-----PGPFIWVVQPGSEEYMPHDLDNRVS-NRGLIIHAWAPQALILNHISTGGFLSHCGWNS 358 (456)
Q Consensus 285 ~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt 358 (456)
+.-...+..+.++.+.+ +.++++-+.+...+..-........ ..+..+.+--.. +++ .++|+.+.-+|-.
T Consensus 200 sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~--~~aD~al~aSGT~- 275 (381)
T COG0763 200 SEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKR-KAF--AAADAALAASGTA- 275 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHH-HHH--HHhhHHHHhccHH-
Confidence 54333333344444332 5677766554321111111111111 012222222112 234 4566888877754
Q ss_pred HHHHHHhCCCeeccCCccc--hhhHHHHHHHHhccEEEEe--------c-CCCCcccHHHHHHHHHHHhCCH----HHHH
Q 046077 359 TMEAIVHGVPFLAWPIRGD--QYFNAKLVVNYIKVGLRVT--------D-DLSETVKKGDIAEGIERLMSDE----EMKT 423 (456)
Q Consensus 359 ~~e~l~~GvP~v~~P~~~d--Q~~na~~~~~~~G~g~~~~--------~-~~~~~~~~~~l~~~i~~~l~~~----~~~~ 423 (456)
+.|+..+|+|||+. +-.+ -.+-|++.. .+...-..+ + -.....+++.|.+++..++.|. .+.+
T Consensus 276 tLE~aL~g~P~Vv~-Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~ 353 (381)
T COG0763 276 TLEAALAGTPMVVA-YKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKE 353 (381)
T ss_pred HHHHHHhCCCEEEE-EeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHH
Confidence 46888999999987 2222 223455555 222211111 0 0024678999999999999987 3556
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 424 RAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 424 ~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
...++.+.++.. ..+..+++.+++.+
T Consensus 354 ~~~~l~~~l~~~--~~~e~aA~~vl~~~ 379 (381)
T COG0763 354 KFRELHQYLRED--PASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHcCC--cHHHHHHHHHHHHh
Confidence 666666666553 35566666666654
No 108
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.02 E-value=0.0055 Score=62.13 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=88.2
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhh--CCCCeEEecccCHHH---hhcccCcc
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRV--SNRGLIIHAWAPQAL---ILNHISTG 348 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~vp~~~---~l~h~~~~ 348 (456)
.+++..|...... .+.+.+.+..+.+.+.++++ +|.+. ..+.+.+.... .+.++.+....+... ++ ..++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g~-~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~--~~aD 367 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVV-LGTGD-PELEEALRELAERYPGNVRVIIGYDEALAHLIY--AGAD 367 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEE-ECCCC-HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH--HhCC
Confidence 5666678777644 44444555555444555543 44432 11122332222 134566555555443 45 5666
Q ss_pred eEEecC---Cch-hHHHHHHhCCCeeccCCccchhhHHHHHHH-----HhccEEEEecCCCCcccHHHHHHHHHHHhC--
Q 046077 349 GFLSHC---GWN-STMEAIVHGVPFLAWPIRGDQYFNAKLVVN-----YIKVGLRVTDDLSETVKKGDIAEGIERLMS-- 417 (456)
Q Consensus 349 ~~I~hg---G~g-t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~-----~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~-- 417 (456)
++|.-+ |.| +.+||+++|+|.|+....+= ...+.+ .-+.|+.+. .-+++++.++|.+++.
T Consensus 368 v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~----~e~v~~~~~~~~~~~G~l~~-----~~d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 368 FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGL----ADTVVDGDPEAESGTGFLFE-----EYDPGALLAALSRALRLY 438 (473)
T ss_pred EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCc----cceEecCCCCCCCCceEEeC-----CCCHHHHHHHHHHHHHHH
Confidence 888654 444 78899999999998765321 111220 116787773 3578899999999887
Q ss_pred --CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 418 --DEEMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 418 --~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
|++.++++.+-+. .+. -+-.+.++++++..
T Consensus 439 ~~~~~~~~~~~~~~~--~~~--fsw~~~a~~~~~~Y 470 (473)
T TIGR02095 439 RQDPSLWEALQKNAM--SQD--FSWDKSAKQYVELY 470 (473)
T ss_pred hcCHHHHHHHHHHHh--ccC--CCcHHHHHHHHHHH
Confidence 6665554443221 122 25455555555443
No 109
>PLN02316 synthase/transferase
Probab=97.96 E-value=0.01 Score=64.31 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=71.8
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhC------CCCeEEecccCHH---Hhhcc
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVS------NRGLIIHAWAPQA---LILNH 344 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~vp~~---~~l~h 344 (456)
.++...|.+.... .+.+...+..+.+.+.++++ +|.+....+...+..... +.++.+....+.. .++
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVI-vG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy-- 917 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVL-LGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY-- 917 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhcCcEEEE-EeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH--
Confidence 4455566665443 33333333333334666654 565421111122222221 2346555444443 345
Q ss_pred cCcceEEecC---Cc-hhHHHHHHhCCCeeccCCcc--chhhHH----HHHHH--HhccEEEEecCCCCcccHHHHHHHH
Q 046077 345 ISTGGFLSHC---GW-NSTMEAIVHGVPFLAWPIRG--DQYFNA----KLVVN--YIKVGLRVTDDLSETVKKGDIAEGI 412 (456)
Q Consensus 345 ~~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~--dQ~~na----~~~~~--~~G~g~~~~~~~~~~~~~~~l~~~i 412 (456)
+.+|+|+.-+ |. .+.+||+++|+|.|+....+ |..... .+.+. .-+-|..+. ..+++.|..+|
T Consensus 918 aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~-----~~d~~aLa~AL 992 (1036)
T PLN02316 918 AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD-----GADAAGVDYAL 992 (1036)
T ss_pred HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC-----CCCHHHHHHHH
Confidence 6777998654 33 48889999999988865532 211110 00000 014677773 45889999999
Q ss_pred HHHhCC
Q 046077 413 ERLMSD 418 (456)
Q Consensus 413 ~~~l~~ 418 (456)
.+++.+
T Consensus 993 ~raL~~ 998 (1036)
T PLN02316 993 NRAISA 998 (1036)
T ss_pred HHHHhh
Confidence 999975
No 110
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00015 Score=57.44 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=72.2
Q ss_pred EEEecCCCCCCCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecc--cCHHHhhcccCcceEE
Q 046077 276 LYVAFGSEVGPTREEYRE--LAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAW--APQALILNHISTGGFL 351 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--vp~~~~l~h~~~~~~I 351 (456)
+||+-||....-...+.. +.+-.+.-..++|+..|.++. .| . .+.++.+| .+-.+-+.|-+ +.+|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--kp------v--agl~v~~F~~~~kiQsli~da-rIVI 70 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--KP------V--AGLRVYGFDKEEKIQSLIHDA-RIVI 70 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--cc------c--cccEEEeechHHHHHHHhhcc-eEEE
Confidence 689999985433333333 333333345688888887532 11 1 23455555 44444444433 5999
Q ss_pred ecCCchhHHHHHHhCCCeeccCC--------ccchhhHHHHHHHHhccEEEE
Q 046077 352 SHCGWNSTMEAIVHGVPFLAWPI--------RGDQYFNAKLVVNYIKVGLRV 395 (456)
Q Consensus 352 ~hgG~gt~~e~l~~GvP~v~~P~--------~~dQ~~na~~~~~~~G~g~~~ 395 (456)
+|+|.||+..++..++|.|++|- ..+|..-|..+. .++.=+..
T Consensus 71 SHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~ 121 (161)
T COG5017 71 SHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVAC 121 (161)
T ss_pred eccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEE
Confidence 99999999999999999999995 357888898888 44766655
No 111
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.91 E-value=0.0017 Score=63.58 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=80.4
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhC--CCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCHH-HhhcccCcce
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEES--PGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQA-LILNHISTGG 349 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~~-~~l~h~~~~~ 349 (456)
..+++.|...... .+.+.+.+..+... +.++++ +|.+.. ..+...........++.+.++.++. .++..+++-+
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i-~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDI-YGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEE-EEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 4456667765433 33333333333222 345444 443321 1111111111223568887776654 4675555333
Q ss_pred EEecC-C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 046077 350 FLSHC-G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAI 427 (456)
Q Consensus 350 ~I~hg-G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 427 (456)
+.++. | ..++.||+++|+|+|+...... ....++ .-..|..+. .-+.+++.++|.++++|++.++.+.+
T Consensus 284 ~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~-~~~~G~lv~-----~~d~~~la~~i~~ll~~~~~~~~~~~ 354 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIE-DGENGYLVP-----KGDIEALAEAIIELLNDPKLLQKFSE 354 (372)
T ss_pred ecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcc-cCCCceEeC-----CCcHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33432 3 4589999999999998754321 233444 325777773 35789999999999999765444444
Q ss_pred HHH
Q 046077 428 LQV 430 (456)
Q Consensus 428 l~~ 430 (456)
-+.
T Consensus 355 ~a~ 357 (372)
T cd04949 355 AAY 357 (372)
T ss_pred HHH
Confidence 333
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.90 E-value=0.00029 Score=69.95 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=90.1
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhCC--CCEEEE-EcCCCCCcCcchhhhh----hCCCCeEEecccCHHH---hh
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEESP--GPFIWV-VQPGSEEYMPHDLDNR----VSNRGLIIHAWAPQAL---IL 342 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~~--~~~i~~-~~~~~~~~~~~~~~~~----~~~~~v~~~~~vp~~~---~l 342 (456)
+..+++.|...... -+.+.+.+..+.+.+ .++.|+ +|.+. ..+.+.+. ....++.+.+|+++.+ ++
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~---~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~ 306 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP---LEDTLKELAESKPENISVNFTGELSNSEVYKLY 306 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch---HHHHHHHHHHhcCCCceEEEecCCChHHHHHHH
Confidence 46667778877654 343444444443332 455554 34332 11222222 2245688999999764 44
Q ss_pred cccCcceEEecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 343 NHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 343 ~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
...+++++|..+- ..+++||+++|+|+|+-...+ ....+. ..+.|..+. ..-+.+++.++|.++++|
T Consensus 307 ~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~-~~~~G~l~~----~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 307 KENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVD-NGGNGLLLS----KDPTPNELVSSLSKFIDN 377 (407)
T ss_pred hhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhc-CCCcEEEeC----CCCCHHHHHHHHHHHHhC
Confidence 4456678887664 458999999999999865433 445555 424788773 234789999999999998
Q ss_pred HHHHHHHHHHHHH
Q 046077 419 EEMKTRAAILQVK 431 (456)
Q Consensus 419 ~~~~~~a~~l~~~ 431 (456)
++.++++++-+.+
T Consensus 378 ~~~~~~m~~~ar~ 390 (407)
T cd04946 378 EEEYQTMREKARE 390 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 8766555444333
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.89 E-value=0.004 Score=63.19 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=72.9
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhC--CCCeEEecccCHH---HhhcccCc
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVS--NRGLIIHAWAPQA---LILNHIST 347 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~vp~~---~~l~h~~~ 347 (456)
..+++..|...... .+.+.+.+..+.+.+.++++ +|.+.. ...+.+.+... ..++.+..-.++. .++ ..+
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~a 371 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVI-LGSGDP-EYEEALRELAARYPGRVAVLIGYDEALAHLIY--AGA 371 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEE-EecCCH-HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HhC
Confidence 35667778877544 44444555555555555544 444321 11122222221 3566544333433 244 556
Q ss_pred ceEEecC---Cc-hhHHHHHHhCCCeeccCCccchh--hHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 348 GGFLSHC---GW-NSTMEAIVHGVPFLAWPIRGDQY--FNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 348 ~~~I~hg---G~-gt~~e~l~~GvP~v~~P~~~dQ~--~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
++++.-+ |. .+.+||+++|+|.|+....+=.. .+.....+. |.|..+. ..+.+++.+++.++++
T Consensus 372 Dv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~-----~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 372 DFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFE-----GYNADALLAALRRALA 441 (476)
T ss_pred CEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeC-----CCCHHHHHHHHHHHHH
Confidence 6888543 22 47789999999999875532111 110000012 5788884 3478999999999885
No 114
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.88 E-value=0.00078 Score=60.30 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCCeEEecccCH-H--HhhcccCcceEEecCC----chhHHHHHHhCCCeeccCCccchh
Q 046077 327 NRGLIIHAWAPQ-A--LILNHISTGGFLSHCG----WNSTMEAIVHGVPFLAWPIRGDQY 379 (456)
Q Consensus 327 ~~~v~~~~~vp~-~--~~l~h~~~~~~I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~ 379 (456)
..|+.+.++++. . ..+. ..++++++-+. .+++.|++++|+|+|+.+....+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~-~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLL-AAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred cccEEEeCCCCcHHHHHHHh-hcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence 457888888632 2 2232 33778998887 789999999999999997755443
No 115
>PLN02949 transferase, transferring glycosyl groups
Probab=97.85 E-value=0.012 Score=59.23 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCCeEEecccCHHH---hhcccCcceEEe---cCCch-hHHHHHHhCCCeeccCCccchhhHHHHHHH-Hhc-cEEEEec
Q 046077 327 NRGLIIHAWAPQAL---ILNHISTGGFLS---HCGWN-STMEAIVHGVPFLAWPIRGDQYFNAKLVVN-YIK-VGLRVTD 397 (456)
Q Consensus 327 ~~~v~~~~~vp~~~---~l~h~~~~~~I~---hgG~g-t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~-~~G-~g~~~~~ 397 (456)
.+++.+.+++|+.+ +|..+ +++|+ +=|.| ++.||+++|+|+|+....+--.+ .+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a--~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGA--VAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhC--cEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC--
Confidence 46799999998665 45444 46764 23444 78999999999999865431000 0000 001 24332
Q ss_pred CCCCcccHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 398 DLSETVKKGDIAEGIERLMS-DEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 398 ~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
-+.++++++|.++++ +++.++.+.+-+++..+. -+-.+-.+++.+.+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--FS~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANR--FSEQRFNEDFKDAIR 455 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHH
Confidence 278999999999998 454443333222222122 244444455544443
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.82 E-value=0.00022 Score=61.42 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=88.9
Q ss_pred CCceEEEecCCCCCCC-HHHHHHHHHHHHh--CCCCEEEEEcCCCC-CcCcchhhhhhCCCCeEEecccCHH---Hhhcc
Q 046077 272 RGSVLYVAFGSEVGPT-REEYRELAGALEE--SPGPFIWVVQPGSE-EYMPHDLDNRVSNRGLIIHAWAPQA---LILNH 344 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~vp~~---~~l~h 344 (456)
+++.+++..|+..... .+.+..++.-+.. ...-.++++|.+.. ..+...........++.+.+++++. .++..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 4457777788876644 4444444444432 23334555552211 1111111222234578899999833 45644
Q ss_pred cCcceEEec----CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHH
Q 046077 345 ISTGGFLSH----CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEE 420 (456)
Q Consensus 345 ~~~~~~I~h----gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 420 (456)
++++|+. +...++.||+++|+|+|+.. ...+...+. ..+.|..+. ..+.+++.++|.+++++++
T Consensus 93 --~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~-~~~~g~~~~-----~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 93 --SDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIN-DGVNGFLFD-----PNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp --TSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSG-TTTSEEEES-----TTSHHHHHHHHHHHHHHHH
T ss_pred --ceeccccccccccccccccccccccceeecc----ccCCceeec-cccceEEeC-----CCCHHHHHHHHHHHHCCHH
Confidence 5588877 55679999999999999753 455556666 425688884 3489999999999999887
Q ss_pred HHHHHHHHHH
Q 046077 421 MKTRAAILQV 430 (456)
Q Consensus 421 ~~~~a~~l~~ 430 (456)
.++.+.+-++
T Consensus 161 ~~~~l~~~~~ 170 (172)
T PF00534_consen 161 LRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7666665544
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.61 E-value=0.00078 Score=66.42 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=82.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCc--Ccchhhhh-hCCCCeEEecccCHHHhh-cccCc
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEY--MPHDLDNR-VSNRGLIIHAWAPQALIL-NHIST 347 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~~~~~~-~~~~~v~~~~~vp~~~~l-~h~~~ 347 (456)
+..++|.+|.+....+++.+.--.+-|+..+...+|........+ +...+... ...+.+.+.++.++.+.| .+..+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~ 362 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLA 362 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhC
Confidence 445999999998888888888888888888888888876543211 11111111 123457788887765543 34556
Q ss_pred ceEE---ecCCchhHHHHHHhCCCeeccCCccchhhHH-HHHHHHhccEEEEecCCCCcccHHH-HHHHHHHHhCCHHHH
Q 046077 348 GGFL---SHCGWNSTMEAIVHGVPFLAWPIRGDQYFNA-KLVVNYIKVGLRVTDDLSETVKKGD-IAEGIERLMSDEEMK 422 (456)
Q Consensus 348 ~~~I---~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na-~~~~~~~G~g~~~~~~~~~~~~~~~-l~~~i~~~l~~~~~~ 422 (456)
|+++ ..+|..|++|||++|||+|..|-..-.-..+ ..+. .+|+.-.+. .+.++ +..++ ++-+|++++
T Consensus 363 DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~-~lGl~ElIA------~s~~eYv~~Av-~La~D~~~l 434 (468)
T PF13844_consen 363 DICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILR-ALGLPELIA------DSEEEYVEIAV-RLATDPERL 434 (468)
T ss_dssp SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHH-HHT-GGGB-------SSHHHHHHHHH-HHHH-HHHH
T ss_pred CEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHH-HcCCchhcC------CCHHHHHHHHH-HHhCCHHHH
Confidence 6775 4578899999999999999998544444444 4444 678876663 24454 55555 566787766
Q ss_pred HHHH
Q 046077 423 TRAA 426 (456)
Q Consensus 423 ~~a~ 426 (456)
++.+
T Consensus 435 ~~lR 438 (468)
T PF13844_consen 435 RALR 438 (468)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.60 E-value=0.022 Score=57.95 Aligned_cols=163 Identities=12% Similarity=0.140 Sum_probs=88.3
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHH----hC-CCCEEEEEcCCCCCcCcchhhhhh----CCCCeEEecccCHHHhhccc
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALE----ES-PGPFIWVVQPGSEEYMPHDLDNRV----SNRGLIIHAWAPQALILNHI 345 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~----~~-~~~~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~vp~~~~l~h~ 345 (456)
.++++.|...... .+..+++|+. .. +.+ +.++|.+.. .+.+++.. ...++.+.++.+...++..+
T Consensus 320 ~~il~vGrl~~~K--g~~~li~A~~~l~~~~p~~~-l~i~G~G~~---~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~a 393 (500)
T TIGR02918 320 FSIITASRLAKEK--HIDWLVKAVVKAKKSVPELT-FDIYGEGGE---KQKLQKIINENQAQDYIHLKGHRNLSEVYKDY 393 (500)
T ss_pred eEEEEEecccccc--CHHHHHHHHHHHHhhCCCeE-EEEEECchh---HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhC
Confidence 5566778876543 3333444432 22 233 334565432 12332222 23568888999888888655
Q ss_pred CcceEEecC---C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCC-CC-ccc-HHHHHHHHHHHhCC
Q 046077 346 STGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDL-SE-TVK-KGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~-~~-~~~-~~~l~~~i~~~l~~ 418 (456)
+ ++|.-+ | ..++.||+++|+|+|+....+. +...++ .-.-|..+..+. .. .-+ .+.++++|.+++++
T Consensus 394 d--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~-~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 394 E--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIE-DNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred C--EEEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHcc-CCCCEEEEeCCccccchhHHHHHHHHHHHHHhCh
Confidence 5 777633 3 3589999999999999754311 233444 314577774210 01 112 78899999999964
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 419 EEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 419 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
+. ++++.+-+.+..+. -+....++++.+.+.
T Consensus 468 ~~-~~~~~~~a~~~a~~--fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 468 ND-IDAFHEYSYQIAEG--FLTANIIEKWKKLVR 498 (500)
T ss_pred HH-HHHHHHHHHHHHHh--cCHHHHHHHHHHHHh
Confidence 32 33333322222222 244455555555443
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.38 E-value=0.084 Score=54.58 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=53.5
Q ss_pred CeEEecccCHH-HhhcccCcceEEecC---C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcc
Q 046077 329 GLIIHAWAPQA-LILNHISTGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETV 403 (456)
Q Consensus 329 ~v~~~~~vp~~-~~l~h~~~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~ 403 (456)
++.+.++.++. .++ ..+++||.-+ | ..++.||+++|+|+|+....+... +. . |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEec------C
Confidence 36666777755 367 5556888744 3 357889999999999987665322 22 2 3333331 3
Q ss_pred cHHHHHHHHHHHhCCHHHH
Q 046077 404 KKGDIAEGIERLMSDEEMK 422 (456)
Q Consensus 404 ~~~~l~~~i~~~l~~~~~~ 422 (456)
+.+++.++|.++++|+..+
T Consensus 667 D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQP 685 (794)
T ss_pred CHHHHHHHHHHHHhCchhh
Confidence 6899999999999887643
No 120
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.27 E-value=0.012 Score=59.72 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=87.1
Q ss_pred ceEEEecCCCCCCC-HHHHHHHHHHHHhCCC-CEEEEEcCCCC-CcCcchhhhh----hCCCCeEEecccCHHHhhcccC
Q 046077 274 SVLYVAFGSEVGPT-REEYRELAGALEESPG-PFIWVVQPGSE-EYMPHDLDNR----VSNRGLIIHAWAPQALILNHIS 346 (456)
Q Consensus 274 ~vv~v~~GS~~~~~-~~~~~~~~~al~~~~~-~~i~~~~~~~~-~~~~~~~~~~----~~~~~v~~~~~vp~~~~l~h~~ 346 (456)
+.+++..|.....+ .+.+.+.+..+.+... --++++|.+.. ...-+.+.+. ...+++.+.+...-..++. .
T Consensus 293 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~--~ 370 (475)
T cd03813 293 PPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLP--K 370 (475)
T ss_pred CcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHH--h
Confidence 45667778876544 3444444444443322 23455565421 1111112221 2246788888666667774 5
Q ss_pred cceEEecC---C-chhHHHHHHhCCCeeccCCccchhhHHHHHHHH----h-ccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 347 TGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNY----I-KVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 347 ~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~----~-G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
++++|.-+ | -.++.||+++|+|+|.-.. ......+++. + ..|..+. ..+.+++.++|.++++
T Consensus 371 aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~-----~~d~~~la~ai~~ll~ 441 (475)
T cd03813 371 LDVLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVP-----PADPEALARAILRLLK 441 (475)
T ss_pred CCEEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEEC-----CCCHHHHHHHHHHHhc
Confidence 55777554 3 3689999999999998543 3333444421 1 2677773 3578999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 046077 418 DEEMKTRAAILQVK 431 (456)
Q Consensus 418 ~~~~~~~a~~l~~~ 431 (456)
|++.++++.+.+.+
T Consensus 442 ~~~~~~~~~~~a~~ 455 (475)
T cd03813 442 DPELRRAMGEAGRK 455 (475)
T ss_pred CHHHHHHHHHHHHH
Confidence 98876666555443
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.18 E-value=0.33 Score=49.35 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCCeEEecccCHH-HhhcccCcceEEec---CC-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEe
Q 046077 327 NRGLIIHAWAPQA-LILNHISTGGFLSH---CG-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVT 396 (456)
Q Consensus 327 ~~~v~~~~~vp~~-~~l~h~~~~~~I~h---gG-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~ 396 (456)
.+++.+.+|..+. .+| ..++++|.. -| .+++.||+++|+|+|+.... .+...+++. ..|..++
T Consensus 454 ~d~V~FlG~~~Dv~~~L--aaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp 521 (578)
T PRK15490 454 LERILFVGASRDVGYWL--QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILD 521 (578)
T ss_pred CCcEEECCChhhHHHHH--HhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEEC
Confidence 4678998987544 355 455688864 34 45899999999999987553 344555533 5787774
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.97 E-value=0.036 Score=52.95 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=64.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeE-EEecCCCCCCCCCCchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTR-TTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
+|+++-....|++.=...+.+.|+++ +.+|++++.+.+.+.++.. |.++ +..++...................
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~----p~vd~v~~~~~~~~~~~~~~~~~~~~~~~ 76 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH----PAVDEVIPVALRRWRKTLFSAATWREIKA 76 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC----CCccEEEEechhhhhhccccchhHHHHHH
Confidence 58999999999999999999999997 9999999998877666653 3453 444442211000000010111222
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVV 121 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v 121 (456)
+...+++. ++|++|.-........++...+.+.+
T Consensus 77 ~~~~lr~~-------~yD~vi~~~~~~~s~~l~~~~~~~r~ 110 (319)
T TIGR02193 77 LRALLRAE-------RYDAVIDAQGLIKSALVARMARGPRH 110 (319)
T ss_pred HHHHHhhc-------cchhhhhhhhhHHHHHHHHhhCCcee
Confidence 33333433 89999854333344456666664433
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.91 E-value=0.01 Score=57.12 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=74.0
Q ss_pred CCCeEEecccCHHHhhcc--cCcceEEecC----C---------chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhcc
Q 046077 327 NRGLIIHAWAPQALILNH--ISTGGFLSHC----G---------WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKV 391 (456)
Q Consensus 327 ~~~v~~~~~vp~~~~l~h--~~~~~~I~hg----G---------~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~ 391 (456)
.+|+.+.+|+|+.++..+ .+.+++.... . -+-+.+.+++|+|+|+.+ +...+..+++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cc
Confidence 468999999998875432 1333332211 0 122677899999999864 45677888855 99
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 046077 392 GLRVTDDLSETVKKGDIAEGIERLMSD--EEMKTRAAILQVKFEQGFPASSVAALNAFSD 449 (456)
Q Consensus 392 g~~~~~~~~~~~~~~~l~~~i~~~l~~--~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 449 (456)
|+.++ +.+++.+++.++..+ .+|+++++++++++++. .-..+++++++.
T Consensus 281 G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g--~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRNG--YFTKKALVDAIK 331 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHh
Confidence 99982 557899999876432 24889999999999875 345556655543
No 124
>PHA01633 putative glycosyl transferase group 1
Probab=96.88 E-value=0.064 Score=51.28 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=53.3
Q ss_pred CCCeEEe---cccCHH---HhhcccCcceEEecC---Cc-hhHHHHHHhCCCeeccCC------ccch------hhHHHH
Q 046077 327 NRGLIIH---AWAPQA---LILNHISTGGFLSHC---GW-NSTMEAIVHGVPFLAWPI------RGDQ------YFNAKL 384 (456)
Q Consensus 327 ~~~v~~~---~~vp~~---~~l~h~~~~~~I~hg---G~-gt~~e~l~~GvP~v~~P~------~~dQ------~~na~~ 384 (456)
..++.+. +++++. .++ ..++++|.-+ |. .++.||+++|+|+|.--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4568777 455644 445 4556888754 44 478899999999998633 2232 222222
Q ss_pred HHH-HhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 385 VVN-YIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 385 ~~~-~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
..+ .-|.|..+ ...+++++.++|.+++.
T Consensus 278 ~~~~~~g~g~~~-----~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 278 YYDKEHGQKWKI-----HKFQIEDMANAIILAFE 306 (335)
T ss_pred hcCcccCceeee-----cCCCHHHHHHHHHHHHh
Confidence 221 12667666 35799999999999953
No 125
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.86 E-value=0.0026 Score=52.13 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=64.3
Q ss_pred eEEEecCCCCCCC-HHHHHH-HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHH-HhhcccCcceEE
Q 046077 275 VLYVAFGSEVGPT-REEYRE-LAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQA-LILNHISTGGFL 351 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~-~~l~h~~~~~~I 351 (456)
+.++++|+....+ .+.+.+ +++.+.+...++.+.+-+.. |+.+... ..+|+.+.+|++.. ++++.+++.+..
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~----~~~l~~~-~~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG----PDELKRL-RRPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES----S-HHCCH-HHCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC----HHHHHHh-cCCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 3445556554322 444444 66666544333433333221 2234333 24589999999633 356555543333
Q ss_pred ec--CC-chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 352 SH--CG-WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 352 ~h--gG-~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
+. .| .+++.|++++|+|+|+.+.. .....+ ..+.|..+. -+++++.++|+++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~-~~~~~~~~~------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVE-EDGCGVLVA------NDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------T-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhee-ecCCeEEEC------CCHHHHHHHHHHHhcC
Confidence 32 22 37899999999999998651 222333 237787762 3889999999999865
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.71 E-value=0.027 Score=46.31 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=66.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEA 83 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (456)
+|++++.....|+ +.+++.|.++||+|++++.....+..+ ...++.+..++.+... ..... .. ..+..
T Consensus 1 KIl~i~~~~~~~~---~~~~~~L~~~g~~V~ii~~~~~~~~~~----~~~~i~~~~~~~~~k~---~~~~~-~~-~~l~k 68 (139)
T PF13477_consen 1 KILLIGNTPSTFI---YNLAKELKKRGYDVHIITPRNDYEKYE----IIEGIKVIRLPSPRKS---PLNYI-KY-FRLRK 68 (139)
T ss_pred CEEEEecCcHHHH---HHHHHHHHHCCCEEEEEEcCCCchhhh----HhCCeEEEEecCCCCc---cHHHH-HH-HHHHH
Confidence 4777777766774 577999999999999999854432222 1237888888644221 12222 22 26677
Q ss_pred HHhhhcCCCCCCCCcEEEecCCcc---cHHHHHHHcC-CCeEEE
Q 046077 84 NLASRSENPDFPAPLCAIVDFQVG---WTKAIFWKFN-IPVVSL 123 (456)
Q Consensus 84 ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lg-IP~v~~ 123 (456)
++++. +||+|.+..... .+..+++..| +|.+..
T Consensus 69 ~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 69 IIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred HhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 77766 999998665432 3445678888 999864
No 127
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.69 E-value=0.42 Score=45.27 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=31.6
Q ss_pred CHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCcc
Q 046077 337 PQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRG 376 (456)
Q Consensus 337 p~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~ 376 (456)
|....|..++ .++||=--.+-++||+..|+|+.+++...
T Consensus 221 Py~~~La~ad-~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAAD-AIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCC-EEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 5667787666 36777777788999999999999998876
No 128
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.061 Score=53.57 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=93.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhh-----hCCCCeEEecccCHHHhh-cc
Q 046077 271 PRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNR-----VSNRGLIIHAWAPQALIL-NH 344 (456)
Q Consensus 271 ~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~vp~~~~l-~h 344 (456)
+++-+||+||+......++.+..=..-|....-.++|..+.+.++.....+... .....+++.+-.|....+ .+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 344599999999998888888887777777888899998876543332223222 223557777777655422 23
Q ss_pred cCcceEEe---cCCchhHHHHHHhCCCeeccCCccchhh--HHHHHHHHhccEEEEecCCCCcccHHHHHHHHH
Q 046077 345 ISTGGFLS---HCGWNSTMEAIVHGVPFLAWPIRGDQYF--NAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIE 413 (456)
Q Consensus 345 ~~~~~~I~---hgG~gt~~e~l~~GvP~v~~P~~~dQ~~--na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 413 (456)
--+|+|.- -||+.|..|+|..|||+|..+ ++|+. |+.-+...+|+--.+. +-.++-++++|+
T Consensus 507 ~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA-----~s~~dYV~~av~ 573 (620)
T COG3914 507 GIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA-----DSRADYVEKAVA 573 (620)
T ss_pred chhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc-----CCHHHHHHHHHH
Confidence 44457764 589999999999999999986 77775 4555554556665553 234455777774
No 129
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.29 E-value=0.89 Score=44.10 Aligned_cols=106 Identities=9% Similarity=0.063 Sum_probs=68.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeE-EEecCCCCCCCCCCchHHHHHH
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTR-TTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
.++|+++-..+.|++.=.+.+.+.|+++ +.+|++++.+.+.+.++.. |.++ ++.++.... .... ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~id~vi~~~~~~~------~~~~-~~ 73 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN----PEINALYGIKNKKA------GASE-KI 73 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC----CCceEEEEeccccc------cHHH-HH
Confidence 4589999999999999999999999987 9999999998877665543 3443 233322100 0001 11
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
..+..+++++.+. ++|++|.-........++...|.|..+
T Consensus 74 ~~~~~l~~~lr~~----~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 74 KNFFSLIKVLRAN----KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHHHHHHHhhC----CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 1223333333222 899999554444456677777887765
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.15 E-value=0.0071 Score=50.71 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHH--hhhcCCCCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANL--ASRSENPDFPA 96 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~ 96 (456)
+..|++.|.++||+|+++++......-+. ...++.+..++...... ..........+..++ ++. +
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-------~ 73 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEE---EEDGVRVHRLPLPRRPW---PLRLLRFLRRLRRLLAARRE-------R 73 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SE---EETTEEEEEE--S-SSS---GGGHCCHHHHHHHHCHHCT---------
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCccccc---ccCCceEEeccCCccch---hhhhHHHHHHHHHHHhhhcc-------C
Confidence 57899999999999999997654332111 12268888877655431 111112335566666 333 9
Q ss_pred CcEEEecCC-cccHHHHHH-HcCCCeEEE
Q 046077 97 PLCAIVDFQ-VGWTKAIFW-KFNIPVVSL 123 (456)
Q Consensus 97 pD~vI~D~~-~~~~~~~A~-~lgIP~v~~ 123 (456)
||+|.+... ......+++ ..++|++..
T Consensus 74 ~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 74 PDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp -SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred CeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 999986643 233344445 889999986
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.05 E-value=1.2 Score=41.23 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEcCCC--CcCCCCCCCCCCCCeEEEecCCCCCCCCCCc-hH--HHHHHHHHHHHH
Q 046077 11 YWQGHLQPCIELCKNFSSRNYHTTLIIPSI--LVSAIPPSFTQYPRTRTTQITSSGRPMPPSD-PL--SQQAAKDLEANL 85 (456)
Q Consensus 11 ~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ll 85 (456)
+-.-|+.=|=.|-..|.++||+|.+-+-+. ..+.+..- ++.+..+-.... .... .. ...-...+.+++
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y-----gf~~~~Igk~g~--~tl~~Kl~~~~eR~~~L~ki~ 80 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY-----GFPYKSIGKHGG--VTLKEKLLESAERVYKLSKII 80 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh-----CCCeEeecccCC--ccHHHHHHHHHHHHHHHHHHH
Confidence 344566667788899999999998866442 11222222 555555533221 1111 11 111223456666
Q ss_pred hhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEech
Q 046077 86 ASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 86 ~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 126 (456)
.++ +||+.|+ -.++.+..+|..+|+|.+.+.-.
T Consensus 81 ~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 81 AEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred hhc-------CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 666 9999999 56788999999999999997443
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.72 E-value=1.1 Score=43.21 Aligned_cols=105 Identities=6% Similarity=-0.006 Sum_probs=68.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeE-EEecCCCCCCCCCCchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTR-TTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
+|+++-..+.|++.=...+.+.|+++ +.+|++++.+.+.+.++.. |.++ +..++..... ...... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~~~~-----~~~~~~-~~ 70 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRKKAK-----AGERKL-AN 70 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChhhhc-----chHHHH-HH
Confidence 58999999999999999999999986 8999999998776665553 3443 3444322110 000111 11
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
...+++++.+. ++|++|.-........++...|+|.-+
T Consensus 71 ~~~l~~~lr~~----~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 71 QFHLIKVLRAN----RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHHHHHHhC----CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 22233333222 899999554445667888888999765
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.70 E-value=0.14 Score=51.46 Aligned_cols=146 Identities=15% Similarity=0.237 Sum_probs=91.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhh-----hCCCCeEEecccCHHH-----h
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNR-----VSNRGLIIHAWAPQAL-----I 341 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~vp~~~-----~ 341 (456)
+..+||++|--....+++.+.--++-|+..+..++|.....-.++ ..|... ..++.+.+.+-+...+ .
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 345899999888888888888888888888999999987543322 222211 1234455544443221 2
Q ss_pred hcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHH
Q 046077 342 LNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEM 421 (456)
Q Consensus 342 l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 421 (456)
|+.-..|-..|. |+.|.++.|++|+|||.+|....--..|.-+--.+|+|-.+.. +.++-.+.--++-+|.++
T Consensus 835 LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~Latd~~~ 907 (966)
T KOG4626|consen 835 LADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVRLATDKEY 907 (966)
T ss_pred hhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHHhhcCHHH
Confidence 322233344454 7889999999999999999876555555433336799987632 444433333345566665
Q ss_pred HHHHH
Q 046077 422 KTRAA 426 (456)
Q Consensus 422 ~~~a~ 426 (456)
.++.+
T Consensus 908 L~~lr 912 (966)
T KOG4626|consen 908 LKKLR 912 (966)
T ss_pred HHHHH
Confidence 54443
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=95.68 E-value=0.19 Score=48.24 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=62.3
Q ss_pred cccCHHH---hhcccCcceEEe---cCC-chhHHHHHHhCCCeeccCCcc--chhh---HHHHHHH----------Hhcc
Q 046077 334 AWAPQAL---ILNHISTGGFLS---HCG-WNSTMEAIVHGVPFLAWPIRG--DQYF---NAKLVVN----------YIKV 391 (456)
Q Consensus 334 ~~vp~~~---~l~h~~~~~~I~---hgG-~gt~~e~l~~GvP~v~~P~~~--dQ~~---na~~~~~----------~~G~ 391 (456)
.++|+.+ ++ ..+|++|. .-| ..++.||+++|+|+|+.-..+ |.-. |.-.++. -.++
T Consensus 196 ~~v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 4466554 45 45557774 223 458899999999999986543 2111 1111110 0124
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 392 GLRVTDDLSETVKKGDIAEGIERLMSD---EEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 392 g~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
|..+ ..+.+++.+++.+++.| ++.+++.+.-++...+. -+-.+.++++.+.+.
T Consensus 274 G~~v------~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~--fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFL------DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYREN--YSYNAIAKMWEKILE 329 (331)
T ss_pred cccc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHh
Confidence 5444 23667788888888876 45666555555544443 355566666666554
No 135
>PRK14098 glycogen synthase; Provisional
Probab=95.68 E-value=0.18 Score=51.34 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=78.8
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhh--CCCCeEEecccCHH---HhhcccCcc
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRV--SNRGLIIHAWAPQA---LILNHISTG 348 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~vp~~---~~l~h~~~~ 348 (456)
.+++..|...... .+.+.+.+..+.+.+.+++ ++|.+.. ...+.+.+.. .+.++.+.++++.. .++ +.+|
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lv-ivG~G~~-~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~--a~aD 383 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLV-ICGSGDK-EYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI--AGLD 383 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEE-EEeCCCH-HHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH--HhCC
Confidence 5666777776654 4444454444544455544 4454321 0112233222 13578888888865 355 5666
Q ss_pred eEEecCC---c-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHh---CCHHH
Q 046077 349 GFLSHCG---W-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLM---SDEEM 421 (456)
Q Consensus 349 ~~I~hgG---~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l---~~~~~ 421 (456)
+++.-+= . .+.+||+++|+|.|+....+-........++. +.|..+. ..+++++.++|.+++ +|++.
T Consensus 384 i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~-----~~d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 384 MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFH-----DYTPEALVAKLGEALALYHDEER 457 (489)
T ss_pred EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeC-----CCCHHHHHHHHHHHHHHHcCHHH
Confidence 8886542 2 36789999999988876533211110011112 5677773 357899999999865 46544
Q ss_pred HH
Q 046077 422 KT 423 (456)
Q Consensus 422 ~~ 423 (456)
++
T Consensus 458 ~~ 459 (489)
T PRK14098 458 WE 459 (489)
T ss_pred HH
Confidence 33
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.61 E-value=0.53 Score=46.77 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=93.7
Q ss_pred HHHHhcCCCCCceEEEecCCCCCC------C----HHHHHHHHHHHHhCCCCEEEEEcCCCCCc-Cc------chhhhhh
Q 046077 263 VIQWLDSKPRGSVLYVAFGSEVGP------T----REEYRELAGALEESPGPFIWVVQPGSEEY-MP------HDLDNRV 325 (456)
Q Consensus 263 ~~~~l~~~~~~~vv~v~~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~-~~------~~~~~~~ 325 (456)
+..|+....++++|-|+.-..... . .+.+.++++.|.+.|.+++++......+. .+ ..+.+..
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 345554434556787776543311 1 24444566666667888887654321000 01 1122222
Q ss_pred C-CCCeE-Ee-cccCHH--HhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCC
Q 046077 326 S-NRGLI-IH-AWAPQA--LILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLS 400 (456)
Q Consensus 326 ~-~~~v~-~~-~~vp~~--~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~ 400 (456)
. +.++. +. ++-+.+ .++ ..|+++|..==+ ++.-|+..|+|.+.+++. +.....++ .+|..-.+.. .
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iI--s~~dl~ig~RlH-a~I~a~~~gvP~i~i~Y~---~K~~~~~~-~lg~~~~~~~--~ 374 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKIL--GACELTVGTRLH-SAIISMNFGTPAIAINYE---HKSAGIMQ-QLGLPEMAID--I 374 (426)
T ss_pred ccccceeEecCCCChHHHHHHH--hhCCEEEEecch-HHHHHHHcCCCEEEeeeh---HHHHHHHH-HcCCccEEec--h
Confidence 2 22222 22 233443 566 555688865433 455577899999999982 44555555 6687755321 2
Q ss_pred CcccHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHh
Q 046077 401 ETVKKGDIAEGIERLMSDE-EMKTRAAILQVKFEQ 434 (456)
Q Consensus 401 ~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~ 434 (456)
+.++.++|.+.+.++++|. +++++.++..++++.
T Consensus 375 ~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 375 RHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ 409 (426)
T ss_pred hhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5788899999999999884 466666666666554
No 137
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.60 E-value=0.8 Score=43.77 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=39.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPP 47 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~ 47 (456)
|||+++-..+.|++.=...+.+.|+++ +.+||+++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 489999999999999999999999986 999999998876655443
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.29 E-value=0.21 Score=37.75 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=53.6
Q ss_pred cCCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhc-cEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHH-H
Q 046077 353 HCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIK-VGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQ-V 430 (456)
Q Consensus 353 hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~-~ 430 (456)
+|-..-+.|++++|+|+|.-.. ......+. . | -++.. . +.+++.++|..+++|++.+++..+-+ +
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~------~-~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITY------N-DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEE------C-CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4455688999999999998854 33444444 3 5 34333 2 89999999999999987555444443 4
Q ss_pred HHHhcCCCChHHHHHHHH
Q 046077 431 KFEQGFPASSVAALNAFS 448 (456)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~ 448 (456)
.+.+. -+....++.++
T Consensus 76 ~v~~~--~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLKR--HTWEHRAEQIL 91 (92)
T ss_pred HHHHh--CCHHHHHHHHH
Confidence 44433 35566666654
No 139
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.05 E-value=0.32 Score=41.23 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=52.3
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCC
Q 046077 13 QGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENP 92 (456)
Q Consensus 13 ~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (456)
-|==.=.+.|+++|+++||+|+++++.......... .......... ..............+..++++.
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~---- 79 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL-----VKIFVKIPYP---IRKRFLRSFFFMRRLRRLIKKE---- 79 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE-----EEE---TT-S---STSS--HHHHHHHHHHHHHHHH----
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc-----cceeeeeecc---cccccchhHHHHHHHHHHHHHc----
Confidence 345566789999999999999999766433222220 0111111111 1111223334456778888887
Q ss_pred CCCCCcEEEecCC-cccHHHHHHHcCCCeEEEech
Q 046077 93 DFPAPLCAIVDFQ-VGWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 93 ~~~~pD~vI~D~~-~~~~~~~A~~lgIP~v~~~~~ 126 (456)
++|+|-+... ..+....+-. ++|.+...-.
T Consensus 80 ---~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~ 110 (177)
T PF13439_consen 80 ---KPDIVHIHGPPAFWIALLACR-KVPIVYTIHG 110 (177)
T ss_dssp ---T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-H
T ss_pred ---CCCeEEecccchhHHHHHhcc-CCCEEEEeCC
Confidence 9999955543 3344444444 9999986433
No 140
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.95 E-value=2.1 Score=43.15 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred EecccCHHHhhc-ccCcceEEecC---Cch-hHHHHHHhCCC----eeccCCccchhhHHHHHHHHhccEEEEecCCCCc
Q 046077 332 IHAWAPQALILN-HISTGGFLSHC---GWN-STMEAIVHGVP----FLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSET 402 (456)
Q Consensus 332 ~~~~vp~~~~l~-h~~~~~~I~hg---G~g-t~~e~l~~GvP----~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~ 402 (456)
+.+.+++.++.. ...+|+++.-+ |.| ++.|++++|+| +|+--+.+-... + +-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~----l----~~gllVnP----- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE----L----NGALLVNP----- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH----h----CCcEEECC-----
Confidence 345666665321 25666888644 765 77799999999 777655543221 2 34777743
Q ss_pred ccHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 403 VKKGDIAEGIERLMSD--EEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 403 ~~~~~l~~~i~~~l~~--~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
.+.++++++|.+++++ ++.+++.+++.+.+... +....++.+++.|.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~---~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRKN---DVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHhh
Confidence 5789999999999975 35777788888887765 88888888887764
No 141
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.89 E-value=3.9 Score=39.50 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=67.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeEE-EecCCCCCCCCCCchHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTRT-TQITSSGRPMPPSDPLSQQAAK 79 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (456)
|+|+++-..+.|++.=.+.+.+.|+++ +.+|++++.+.+.+.++.. |.++- +.++.. .. ... ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi~~~~~--~~---~~~----~~ 67 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMPLG--HG---ALE----IG 67 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEEecccc--cc---hhh----hH
Confidence 479999999999999999999999986 9999999988776666554 33432 222211 00 000 11
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
...++++++.+. ++|++|.=....-...++...|+|.-.
T Consensus 68 ~~~~l~~~lr~~----~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 68 ERRRLGHSLREK----RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred HHHHHHHHHHhc----CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 222333333332 899998654445666777888888664
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.86 E-value=1.9 Score=40.11 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=65.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeE-EEecCCCCCCCCCCchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTR-TTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
+|+++-..+.|++.=...+.+.|+++ +.+|++++.+...+.++.. |.++ +..++... .......
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~----p~id~v~~~~~~~---------~~~~~~~ 67 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM----PEVDRVIVLPKKH---------GKLGLGA 67 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC----CccCEEEEcCCcc---------cccchHH
Confidence 58999999999999999999999997 5899999999776665553 2332 23332211 0011122
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
...+++++.+. ++|++|.-........++...+++...
T Consensus 68 ~~~~~~~l~~~----~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 68 RRRLARALRRR----RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred HHHHHHHHhhc----CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 33444444332 899998654444555566677776654
No 143
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.70 E-value=0.26 Score=43.18 Aligned_cols=116 Identities=16% Similarity=0.050 Sum_probs=62.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCC-----CchHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPP-----SDPLSQQA 77 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~ 77 (456)
|+||+.-==+. +---+..|++.|.+.||+|+++.|..-++......+....++......+...... .-...+-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 34555443333 2234667899997788999999999877766665554445666444311111000 01122233
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEec----------CCc---ccHHHHHHHcCCCeEEEech
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVD----------FQV---GWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D----------~~~---~~~~~~A~~lgIP~v~~~~~ 126 (456)
.-.+..++.+. +||+||+. .+. ..+..-|-.+|||.+.++..
T Consensus 80 ~~al~~~~~~~-------~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KLALDGLLPDK-------KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHHHHCTSTTS-------S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHhhhccC-------CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 34445554443 69999964 122 23344556779999988553
No 144
>PRK10125 putative glycosyl transferase; Provisional
Probab=94.42 E-value=1.2 Score=44.20 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=65.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCcCcchhhhhhCCCCeEEecccC-HH---HhhcccCcceE
Q 046077 276 LYVAFGSEVGPTREEYRELAGALEESPGPF-IWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAP-QA---LILNHISTGGF 350 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp-~~---~~l~h~~~~~~ 350 (456)
+++..|.........+..+++++...+..+ ++++|.+.. . ...++...++.. +. .++ ..+|+|
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~-----~-----~~~~v~~~g~~~~~~~l~~~y--~~aDvf 310 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP-----F-----TAGNVVNHGFETDKRKLMSAL--NQMDAL 310 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc-----c-----cccceEEecCcCCHHHHHHHH--HhCCEE
Confidence 334445433222334566778887764433 445554321 0 013455566653 32 334 445688
Q ss_pred EecCC----chhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHH
Q 046077 351 LSHCG----WNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGI 412 (456)
Q Consensus 351 I~hgG----~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i 412 (456)
|.-+= -.++.||+++|+|+|.....+= ...+. . +-|+.++. -+.++|++++
T Consensus 311 V~pS~~Egfp~vilEAmA~G~PVVat~~gG~----~Eiv~-~-~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 311 VFSSRVDNYPLILCEALSIGVPVIATHSDAA----REVLQ-K-SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred EECCccccCcCHHHHHHHcCCCEEEeCCCCh----HHhEe-C-CcEEEECC-----CCHHHHHhcc
Confidence 87543 3588999999999999987652 22333 3 56888843 3677788754
No 145
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.26 E-value=0.045 Score=41.83 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHhcCCCCCceEEEecCCCCCC---CH--HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 046077 262 EVIQWLDSKPRGSVLYVAFGSEVGP---TR--EEYRELAGALEESPGPFIWVVQPGSE 314 (456)
Q Consensus 262 ~~~~~l~~~~~~~vv~v~~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (456)
.+..|+-..+.+|.|+||+||.... .. ..+..++++++..+..+|..+.....
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 4556998889999999999998874 22 47778999999999999999987544
No 146
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.91 E-value=4.7 Score=36.41 Aligned_cols=93 Identities=14% Similarity=0.002 Sum_probs=56.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+++|+++- ++++ ...||++|...++.+++.+....-...... ...... ... .-.+.
T Consensus 1 ~~~~ilvlG--GT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~---~~~~~~---------~G~------l~~e~ 57 (257)
T COG2099 1 SMMRILLLG--GTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQ---IGPVRV---------GGF------LGAEG 57 (257)
T ss_pred CCceEEEEe--ccHH---HHHHHHHhhccCccEEEEEcccccccchhc---cCCeee---------cCc------CCHHH
Confidence 456666654 3333 578999999999888887765332222211 001000 000 12456
Q ss_pred HHHHHhhhcCCCCCCCCcEEE--ecCCc----ccHHHHHHHcCCCeEEE
Q 046077 81 LEANLASRSENPDFPAPLCAI--VDFQV----GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI--~D~~~----~~~~~~A~~lgIP~v~~ 123 (456)
+.+++++. +.|+|| +.++. -=+..+|+..|||++.|
T Consensus 58 l~~~l~e~-------~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 58 LAAFLREE-------GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHc-------CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 78888887 899888 33332 23457899999999997
No 147
>PRK14099 glycogen synthase; Provisional
Probab=93.77 E-value=1.9 Score=43.86 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=74.8
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhC--CCCe-EEecccCHHHhhcccCcceE
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVS--NRGL-IIHAWAPQALILNHISTGGF 350 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~v-~~~~~vp~~~~l~h~~~~~~ 350 (456)
.++...|.....+ -+.+.+.+..+.+.+.+++ ++|.+.. .+.+.+.+... +.++ .+.+|-....-+..+.+|++
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lv-ivG~G~~-~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDif 373 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLA-LLGSGDA-ELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADAL 373 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEE-EEecCCH-HHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEE
Confidence 3444556665444 3334443444433455544 4444321 11122322211 2334 46677333222222457788
Q ss_pred Eec---CCc-hhHHHHHHhCCCeeccCCcc--chhhHHHHHHHHh--ccEEEEecCCCCcccHHHHHHHHHH---HhCCH
Q 046077 351 LSH---CGW-NSTMEAIVHGVPFLAWPIRG--DQYFNAKLVVNYI--KVGLRVTDDLSETVKKGDIAEGIER---LMSDE 419 (456)
Q Consensus 351 I~h---gG~-gt~~e~l~~GvP~v~~P~~~--dQ~~na~~~~~~~--G~g~~~~~~~~~~~~~~~l~~~i~~---~l~~~ 419 (456)
+.- =|. .+.+||+++|+|.|+....+ |--.......+.. +.|+.+. ..++++|.++|.+ +++|+
T Consensus 374 v~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~-----~~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 374 LVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-----PVTADALAAALRKTAALFADP 448 (485)
T ss_pred EECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC-----CCCHHHHHHHHHHHHHHhcCH
Confidence 864 333 36789999998777664322 2111110000000 3677774 3578999999987 66787
Q ss_pred HHHHHHHHHH
Q 046077 420 EMKTRAAILQ 429 (456)
Q Consensus 420 ~~~~~a~~l~ 429 (456)
+.++++.+-+
T Consensus 449 ~~~~~l~~~~ 458 (485)
T PRK14099 449 VAWRRLQRNG 458 (485)
T ss_pred HHHHHHHHHh
Confidence 7666555443
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.47 E-value=1.6 Score=39.95 Aligned_cols=115 Identities=11% Similarity=-0.045 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC-CCCCCCCch-HHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS-GRPMPPSDP-LSQQAA 78 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~~~~~ 78 (456)
|+||||+.-==+.-- --+.+|++.|.+.| +|+++.|..-++......+....+++..+... ......... ..+-..
T Consensus 4 ~~M~ILltNDDGi~a-~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~ 81 (257)
T PRK13932 4 KKPHILVCNDDGIEG-EGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCIK 81 (257)
T ss_pred CCCEEEEECCCCCCC-HHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHHH
Confidence 677888765322211 23567888998878 79999988766666665555446777666422 111011011 111122
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecC----------Cc---ccHHHHHHHcCCCeEEEec
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDF----------QV---GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~----------~~---~~~~~~A~~lgIP~v~~~~ 125 (456)
-.+..++. . +||+||+.. +. ..+..-|-.+|||.+.++.
T Consensus 82 lal~~~~~----~----~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 82 VALSHILP----E----KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHhhcC----C----CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 33333332 1 899999642 22 2334455678999998865
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.61 Score=38.95 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSG 64 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 64 (456)
|.++|++.-.|+.|-..=...++..|.++|+.|-=+-+++.++--... +++...+..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~-----GF~Ivdl~tg~ 62 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI-----GFKIVDLATGE 62 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe-----eeEEEEccCCc
Confidence 678999999999999999999999999999999877777766554444 67777776554
No 150
>PLN02939 transferase, transferring glycosyl groups
Probab=93.40 E-value=3.4 Score=44.88 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=78.7
Q ss_pred eEEEecCCCCCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhh----hhCCCCeEEecccCHH---HhhcccC
Q 046077 275 VLYVAFGSEVGPT-REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDN----RVSNRGLIIHAWAPQA---LILNHIS 346 (456)
Q Consensus 275 vv~v~~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~vp~~---~~l~h~~ 346 (456)
+++...|...... .+.+...+..+...+.++ +++|.+....+-..+.. .....+|.+.++.+.. .++ +.
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqL-VIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IY--Aa 856 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQF-VLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIY--AA 856 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEE-EEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHH--Hh
Confidence 4555667666544 333333333333345554 44555421111112222 1224568888888765 356 66
Q ss_pred cceEEecC---C-chhHHHHHHhCCCeeccCCcc--chhhH--HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC-
Q 046077 347 TGGFLSHC---G-WNSTMEAIVHGVPFLAWPIRG--DQYFN--AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS- 417 (456)
Q Consensus 347 ~~~~I~hg---G-~gt~~e~l~~GvP~v~~P~~~--dQ~~n--a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~- 417 (456)
+|+||.-+ | ..+++||+++|+|.|+....+ |-..+ ...+.+.-+-|..+. ..+++++.++|.++++
T Consensus 857 ADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~-----~~D~eaLa~AL~rAL~~ 931 (977)
T PLN02939 857 SDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL-----TPDEQGLNSALERAFNY 931 (977)
T ss_pred CCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec-----CCCHHHHHHHHHHHHHH
Confidence 67888753 2 247899999999999876543 21111 111111124576663 3478888888888764
Q ss_pred ---CHHHHHHHHH
Q 046077 418 ---DEEMKTRAAI 427 (456)
Q Consensus 418 ---~~~~~~~a~~ 427 (456)
|++.++++.+
T Consensus 932 ~~~dpe~~~~L~~ 944 (977)
T PLN02939 932 YKRKPEVWKQLVQ 944 (977)
T ss_pred hccCHHHHHHHHH
Confidence 6666555543
No 151
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.34 E-value=6.3 Score=36.96 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCcC---CCCCC-C--CCCCCeEEEecCCCCCCCCC-Cch-HHHHHHHHHHHHHhhh
Q 046077 17 QPCIELCKNFSSRNYHTTLIIPSILVS---AIPPS-F--TQYPRTRTTQITSSGRPMPP-SDP-LSQQAAKDLEANLASR 88 (456)
Q Consensus 17 ~P~l~LA~~L~~~Gh~Vt~~~~~~~~~---~~~~~-~--~~~~~i~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ll~~~ 88 (456)
..-+.|++.|.++|++|.+++.+.... .+... . .........-+|.+...... ... ....-...-+++++.+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~ 90 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLEST 90 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhc
Confidence 567899999999999999998763211 11110 0 01123444444444322111 111 1111111124567777
Q ss_pred cCCCCCCCCcEEEecCCcccHHH-HHHHcCCCeEEE
Q 046077 89 SENPDFPAPLCAIVDFQVGWTKA-IFWKFNIPVVSL 123 (456)
Q Consensus 89 ~~~~~~~~pD~vI~D~~~~~~~~-~A~~lgIP~v~~ 123 (456)
++.++++-.....-.. .|+..||+++-+
T Consensus 91 -------~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 91 -------KGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred -------CCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 5566665545444444 999999999965
No 152
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=93.04 E-value=1.9 Score=43.50 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=76.4
Q ss_pred eEEecccCHHHhhc-ccCcceEEe---cCCchhHH-HHHHhCC----CeeccCCccchhhHHHHHHHHhccEEEEecCCC
Q 046077 330 LIIHAWAPQALILN-HISTGGFLS---HCGWNSTM-EAIVHGV----PFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLS 400 (456)
Q Consensus 330 v~~~~~vp~~~~l~-h~~~~~~I~---hgG~gt~~-e~l~~Gv----P~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~ 400 (456)
+.+.+.+|+.++.. ...+|+++. .-|+|-+. |.++++. |+|+--+.+=- + .+.-|+.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa-------~-~l~~AllVNP--- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAA-------V-ELKGALLTNP--- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccch-------h-hcCCCEEECC---
Confidence 56667888776433 234445554 34888665 9999988 66655443321 2 4456788854
Q ss_pred CcccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Q 046077 401 ETVKKGDIAEGIERLMSDE--EMKTRAAILQVKFEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 401 ~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
.+.++++++|.++|+.+ +-+++.+++.+.++.. +.....+.+++.|..
T Consensus 433 --~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~---d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY---DVQRWADEFLAAVSP 482 (487)
T ss_pred --CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHhhh
Confidence 58899999999999864 5778888888888776 888888988888764
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.95 E-value=9 Score=36.72 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=65.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeE-EEecCCCCCCCCCCchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTR-TTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
||+++-..+.|++.=...+.+.|++. +.+|++++.+.+.+.++.. |.++ ++.++... . ..... ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~id~v~~~~~~~--~---~~~~~-~~~~ 70 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----PEIRQAIDMPLGH--G---ALELT-ERRR 70 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----chhceeeecCCcc--c---chhhh-HHHH
Confidence 58999999999999999999999986 9999999988765555543 3332 22222211 0 00011 1112
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
+...+++. ++|++|.-........++...|+|.-.
T Consensus 71 ~~~~lr~~-------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 71 LGRSLREE-------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred HHHHHhhc-------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 22333333 899999765555666777888888653
No 154
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=6.4 Score=37.83 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=69.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHH
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAK 79 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (456)
.|+|+++-..+.|++.=.+.+-..|+++ +.++++++.+.+.+.+... |.++-.-.-..... . ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~----p~I~~vi~~~~~~~-----~---~~~~ 68 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN----PEIDKVIIIDKKKK-----G---LGLK 68 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC----hHhhhhcccccccc-----c---cchH
Confidence 3789999999999999999999999987 6999999999876665553 23332211011000 0 1223
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
....+.+.+.+. ++|+||.=.-.+-...++...++|.-.
T Consensus 69 ~~~~l~~~lr~~----~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 69 ERLALLRTLRKE----RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred HHHHHHHHhhcc----CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 333344433322 799999766666667777788888776
No 155
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.70 E-value=4.5 Score=41.42 Aligned_cols=101 Identities=10% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCeEEecccC--H-HHhhcccCcceEEecC---CchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCC
Q 046077 328 RGLIIHAWAP--Q-ALILNHISTGGFLSHC---GWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSE 401 (456)
Q Consensus 328 ~~v~~~~~vp--~-~~~l~h~~~~~~I~hg---G~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~ 401 (456)
..+.+.++.+ + ..++.+++ ++|.=+ |.+|..||+.+|+|+| .......++ ...=|..+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~-d~~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVE-HNKNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeE-cCCCcEEe------
Confidence 4577888877 2 34664444 888765 7789999999999999 111222333 21334444
Q ss_pred cccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 046077 402 TVKKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAF 447 (456)
Q Consensus 402 ~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 447 (456)
-+..+|.++|..+|++.+-..++..-+-+..+. -++...++++
T Consensus 473 -~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~--yS~~~i~~kW 515 (519)
T TIGR03713 473 -DDISELLKALDYYLDNLKNWNYSLAYSIKLIDD--YSSENIIERL 515 (519)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 267899999999999986555555444443332 2444444443
No 156
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=92.50 E-value=0.75 Score=41.96 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|.++|+++..-+-|+ .||+.|.++|+.|++.+...... ... .+...+.=..+ ....
T Consensus 1 ~~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~-~~~-----~~~~v~~G~l~-------------~~~~ 56 (248)
T PRK08057 1 MMPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG-PAD-----LPGPVRVGGFG-------------GAEG 56 (248)
T ss_pred CCceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC-ccc-----CCceEEECCCC-------------CHHH
Confidence 788999988666665 78999999999998877665443 111 12222221100 2456
Q ss_pred HHHHHhhhcCCCCCCCCcEEE--ecCCc----ccHHHHHHHcCCCeEEE
Q 046077 81 LEANLASRSENPDFPAPLCAI--VDFQV----GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI--~D~~~----~~~~~~A~~lgIP~v~~ 123 (456)
+.+++++. ++++|| +.+|. .-+..+|+.+|||++.|
T Consensus 57 l~~~l~~~-------~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 57 LAAYLREE-------GIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHC-------CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 77777766 899988 44442 23457899999999998
No 157
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.36 E-value=2.1 Score=43.21 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=64.5
Q ss_pred EecccCHHHhhc-ccCcceEEe---cCCch-hHHHHHHhCCC----eeccCCccchhhHHHHHHHHhccEEEEecCCCCc
Q 046077 332 IHAWAPQALILN-HISTGGFLS---HCGWN-STMEAIVHGVP----FLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSET 402 (456)
Q Consensus 332 ~~~~vp~~~~l~-h~~~~~~I~---hgG~g-t~~e~l~~GvP----~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~ 402 (456)
+.+++++.++.. ...+|++|. +-|.| ++.|++++|+| +|+--+.+-... ..-|+.++ .
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~--------~~~g~lv~-----p 411 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE--------LSGALLVN-----P 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh--------cCCCEEEC-----C
Confidence 446777665321 255567774 34654 67899999999 554433221111 13366664 2
Q ss_pred ccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 046077 403 VKKGDIAEGIERLMSDE--EMKTRAAILQVKFEQGFPASSVAALNAFSDFI 451 (456)
Q Consensus 403 ~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l 451 (456)
-+.++++++|.++++++ +.+++.++..+.+.+. +....++++++.|
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~---~~~~w~~~~l~~l 459 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVRTH---DVQAWANSFLDDL 459 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhh
Confidence 47899999999999864 3444455555555554 7777777777665
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=1.1 Score=41.36 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=60.9
Q ss_pred ecccCHHHhhcccCcceEEecCCchhHH-HHHHhCCCeeccCCccchhh--HHHHHHHHhccEEEEecCCCCcccHHHHH
Q 046077 333 HAWAPQALILNHISTGGFLSHCGWNSTM-EAIVHGVPFLAWPIRGDQYF--NAKLVVNYIKVGLRVTDDLSETVKKGDIA 409 (456)
Q Consensus 333 ~~~vp~~~~l~h~~~~~~I~hgG~gt~~-e~l~~GvP~v~~P~~~dQ~~--na~~~~~~~G~g~~~~~~~~~~~~~~~l~ 409 (456)
..|-...++|.|++ +.|-- +||.. +++-.|||+|.+|-.+-|+. -|.+=.+-+|+.+.+-. ..+..-.
T Consensus 300 lsqqsfadiLH~ad--aalgm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~ 370 (412)
T COG4370 300 LSQQSFADILHAAD--AALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAA 370 (412)
T ss_pred EeHHHHHHHHHHHH--HHHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHH
Confidence 34455556666555 33332 34444 45778999999999888865 56666667899988842 2233333
Q ss_pred HHHHHHhCCHHHHHHHHHH-HHHHHhc
Q 046077 410 EGIERLMSDEEMKTRAAIL-QVKFEQG 435 (456)
Q Consensus 410 ~~i~~~l~~~~~~~~a~~l-~~~~~~~ 435 (456)
.+.++++.|+++.+..+.. ++++.+.
T Consensus 371 ~~~q~ll~dp~r~~air~nGqrRiGqa 397 (412)
T COG4370 371 QAVQELLGDPQRLTAIRHNGQRRIGQA 397 (412)
T ss_pred HHHHHHhcChHHHHHHHhcchhhccCc
Confidence 3444599999999888855 4555555
No 159
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.37 E-value=3.1 Score=35.49 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=50.2
Q ss_pred hCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC---CCC----chHHHHHHHHHHHHHhhhcCCCCCCCCcEE
Q 046077 28 SRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM---PPS----DPLSQQAAKDLEANLASRSENPDFPAPLCA 100 (456)
Q Consensus 28 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~pD~v 100 (456)
++||+|++++........ ++++...+....... ... .....+.. .+...+.++.+.+ -.||+|
T Consensus 1 q~gh~v~fl~~~~~~~~~-------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~G--f~PDvI 70 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQG--FVPDVI 70 (171)
T ss_pred CCCCEEEEEecCCCCCCC-------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcC--CCCCEE
Confidence 579999999955333222 267776666533221 111 11222222 2222333332221 289999
Q ss_pred EecCCcccHHHHHHHc-CCCeEEEe
Q 046077 101 IVDFQVGWTKAIFWKF-NIPVVSLF 124 (456)
Q Consensus 101 I~D~~~~~~~~~A~~l-gIP~v~~~ 124 (456)
|+..-...+.-+-+.+ ++|.+.|+
T Consensus 71 ~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 71 IAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred EEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9997766777788888 99999873
No 160
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.15 E-value=3.1 Score=45.01 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred cccCHHH---hhcccCcceEEecC---Cch-hHHHHHHhCCC---eecc-CCccchhhHHHHHHHHhc-cEEEEecCCCC
Q 046077 334 AWAPQAL---ILNHISTGGFLSHC---GWN-STMEAIVHGVP---FLAW-PIRGDQYFNAKLVVNYIK-VGLRVTDDLSE 401 (456)
Q Consensus 334 ~~vp~~~---~l~h~~~~~~I~hg---G~g-t~~e~l~~GvP---~v~~-P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~ 401 (456)
++++..+ ++ ..+++++.-+ |.| +..|++++|+| ++++ -+.+-- .. +| .|+.+++
T Consensus 362 ~~v~~~el~aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~----~~----l~~~allVnP---- 427 (797)
T PLN03063 362 CSVDFNYLCALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG----QS----LGAGALLVNP---- 427 (797)
T ss_pred CCCCHHHHHHHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch----hh----hcCCeEEECC----
Confidence 3555443 44 5556888654 886 66699999999 3444 343321 11 23 5788853
Q ss_pred cccHHHHHHHHHHHhC-CH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Q 046077 402 TVKKGDIAEGIERLMS-DE-EMKTRAAILQVKFEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 402 ~~~~~~l~~~i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
.+.++++++|.++|+ ++ +.+++.+++.+.+... +....++.+++.+.+
T Consensus 428 -~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~---~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 428 -WNITEVSSAIKEALNMSDEERETRHRHNFQYVKTH---SAQKWADDFMSELND 477 (797)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC---CHHHHHHHHHHHHHH
Confidence 588999999999998 44 4556677777777665 777888888777653
No 161
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.13 E-value=1.7 Score=39.30 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPAPL 98 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD 98 (456)
+-.|++.|. .+++|+++.|..-++......+....++...+........ -...+-..-.+..++++. .||
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~--GTPaDCV~lal~~l~~~~-------~pD 85 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVN--GTPADCVILGLNELLKEP-------RPD 85 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccceEEec--CChHHHHHHHHHHhccCC-------CCC
Confidence 345677777 8999999999987777766655555566655554221100 011222344566666654 799
Q ss_pred EEEecC----------CcccH---HHHHHHcCCCeEEEech
Q 046077 99 CAIVDF----------QVGWT---KAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 99 ~vI~D~----------~~~~~---~~~A~~lgIP~v~~~~~ 126 (456)
+||+.. ....+ ..=|..+|||.|.++-.
T Consensus 86 LVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 86 LVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred EEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 999642 22233 33346789999987554
No 162
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=90.95 E-value=0.54 Score=43.13 Aligned_cols=91 Identities=9% Similarity=0.051 Sum_probs=54.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC-CCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS-AIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
|+|+++. ++|. ...||+.|.++||+|+..+...... .+.+. .....+. +. + -...+
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~----g~~~v~~---g~---------l--~~~~l 57 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH----QALTVHT---GA---------L--DPQEL 57 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCcccccccc----CCceEEE---CC---------C--CHHHH
Confidence 3566654 4442 6689999999999999887665432 22221 0111111 10 0 12336
Q ss_pred HHHHhhhcCCCCCCCCcEEEec--CC----cccHHHHHHHcCCCeEEE
Q 046077 82 EANLASRSENPDFPAPLCAIVD--FQ----VGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D--~~----~~~~~~~A~~lgIP~v~~ 123 (456)
.+++.+. ++|+||-- ++ +.-+..+++.+|||++.|
T Consensus 58 ~~~l~~~-------~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 58 REFLKRH-------SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 6777766 89988722 22 123457899999999997
No 163
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.31 E-value=14 Score=34.52 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=76.5
Q ss_pred eEEEecCCCCC-CCHHHHHHHHHHHHhCCC-CEEEEEcCCCCC--cCcchhhhhhCCCCeEEecccCHH---HhhcccCc
Q 046077 275 VLYVAFGSEVG-PTREEYRELAGALEESPG-PFIWVVQPGSEE--YMPHDLDNRVSNRGLIIHAWAPQA---LILNHIST 347 (456)
Q Consensus 275 vv~v~~GS~~~-~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~vp~~---~~l~h~~~ 347 (456)
.+++..|.... ...+.+.+.+..+..... --++.+|.+... .+...........++...++++.. .++.. +
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--~ 277 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLAS--A 277 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHh--C
Confidence 46666777544 224444445555544432 223444443211 111222222223578888998822 34433 3
Q ss_pred ceEEec---CCch-hHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 046077 348 GGFLSH---CGWN-STMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKT 423 (456)
Q Consensus 348 ~~~I~h---gG~g-t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 423 (456)
++++.- .|.| ++.|++++|+|+|..... .....+. ..+.|.... ..+.+++.+++..++++.+.++
T Consensus 278 ~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~-~~~~g~~~~-----~~~~~~~~~~i~~~~~~~~~~~ 347 (381)
T COG0438 278 DVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVE-DGETGLLVP-----PGDVEELADALEQLLEDPELRE 347 (381)
T ss_pred CEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhc-CCCceEecC-----CCCHHHHHHHHHHHhcCHHHHH
Confidence 467766 3554 459999999999776543 2222333 312366331 1268999999999998875555
Q ss_pred HHHH
Q 046077 424 RAAI 427 (456)
Q Consensus 424 ~a~~ 427 (456)
...+
T Consensus 348 ~~~~ 351 (381)
T COG0438 348 ELGE 351 (381)
T ss_pred HHHH
Confidence 4443
No 164
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.91 E-value=9 Score=38.27 Aligned_cols=141 Identities=9% Similarity=0.030 Sum_probs=83.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEec-ccC--HHHhhcccC
Q 046077 271 PRGSVLYVAFGSEVGPTREEYRELAGALEES-PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHA-WAP--QALILNHIS 346 (456)
Q Consensus 271 ~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~vp--~~~~l~h~~ 346 (456)
..+.+++++ ..+++..+....+.. +..+-+..+.. ..+.+......+|++... +.+ -.+++..++
T Consensus 281 ~~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 281 YRKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----MSSKLMSLDKYDNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred CcccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----ccHHHHHHHhcCCcEEECCcChHHHHHHHHhcc
Confidence 344577766 144555555555554 44444422221 113343332336666554 565 346888888
Q ss_pred cceEEecCCc--hhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 046077 347 TGGFLSHCGW--NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTR 424 (456)
Q Consensus 347 ~~~~I~hgG~--gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 424 (456)
+-+-|+||.. .++.||+.+|+|++..-...+.. ..+. . |.... .-+.+++.++|.++|+|++..+.
T Consensus 350 lyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~-~---g~l~~-----~~~~~~m~~~i~~lL~d~~~~~~ 417 (438)
T TIGR02919 350 IYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA-S---ENIFE-----HNEVDQLISKLKDLLNDPNQFRE 417 (438)
T ss_pred EEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc-C---Cceec-----CCCHHHHHHHHHHHhcCHHHHHH
Confidence 8888899774 78999999999999885443322 2222 1 44442 34679999999999999864444
Q ss_pred HHHHHHHHHh
Q 046077 425 AAILQVKFEQ 434 (456)
Q Consensus 425 a~~l~~~~~~ 434 (456)
+-..+++...
T Consensus 418 ~~~~q~~~a~ 427 (438)
T TIGR02919 418 LLEQQREHAN 427 (438)
T ss_pred HHHHHHHHhc
Confidence 4444444433
No 165
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=89.89 E-value=3.4 Score=37.62 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC-CCCCCCCc-hHHHHHHHHHHHHHhhhcCCCCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS-GRPMPPSD-PLSQQAAKDLEANLASRSENPDFPA 96 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 96 (456)
+.+|++.|.+.| +|+++.+..-++......+....+++..++.. ........ ....-..-.+..++. . +
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~gl~~l~~-~-------~ 86 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILGINELMP-E-------V 86 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHHHHHhcc-C-------C
Confidence 567889998888 89999998877766666555556777776531 11100000 111222333344332 1 7
Q ss_pred CcEEEecC----------Cc---ccHHHHHHHcCCCeEEEec
Q 046077 97 PLCAIVDF----------QV---GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 97 pD~vI~D~----------~~---~~~~~~A~~lgIP~v~~~~ 125 (456)
||+||+.. +. ..+..-|-.+|||.+.++.
T Consensus 87 pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 87 PDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred CCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 99999642 21 2334455677999998754
No 166
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=88.93 E-value=2.9 Score=44.91 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=67.6
Q ss_pred EEecccCHHHhhc-ccCcceEEecC---Cch-hHHHHHHhCCC---eecc-CCccchhhHHHHHHHHhccEEEEecCCCC
Q 046077 331 IIHAWAPQALILN-HISTGGFLSHC---GWN-STMEAIVHGVP---FLAW-PIRGDQYFNAKLVVNYIKVGLRVTDDLSE 401 (456)
Q Consensus 331 ~~~~~vp~~~~l~-h~~~~~~I~hg---G~g-t~~e~l~~GvP---~v~~-P~~~dQ~~na~~~~~~~G~g~~~~~~~~~ 401 (456)
.+.+++++.++.. ...+|+++.-+ |.| ++.|++++|+| .+++ -+.+. +..+ .-|+.+++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~----~~~l----~~~llv~P---- 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA----AAEL----AEALLVNP---- 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch----hHHh----CcCeEECC----
Confidence 4557788775322 25556777653 554 67799999775 2222 22221 1111 23777743
Q ss_pred cccHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Q 046077 402 TVKKGDIAEGIERLMSD--EEMKTRAAILQVKFEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 402 ~~~~~~l~~~i~~~l~~--~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
.+.++++++|.+++++ ++.+++.+++.+.+... +....++.+++.+.+
T Consensus 413 -~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~---~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRY---DVHKWASDFLDELRE 462 (726)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 4789999999999985 35666677776666654 777777777776653
No 167
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.92 E-value=18 Score=32.97 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=55.1
Q ss_pred eEEEecCCCCCCC--HHHHHH----HHHHHHhCCCCEEEEEcCCCCCcCcchhhhh-hCCCCeEE----ecccCHHHhhc
Q 046077 275 VLYVAFGSEVGPT--REEYRE----LAGALEESPGPFIWVVQPGSEEYMPHDLDNR-VSNRGLII----HAWAPQALILN 343 (456)
Q Consensus 275 vv~v~~GS~~~~~--~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~v~~----~~~vp~~~~l~ 343 (456)
|.++-.|+..... +++... +.+.+++.|.+++++......+.....+... ....+++. .++=|+.+.|.
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La 243 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLA 243 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHh
Confidence 5555566655433 333333 3455666788988887654422221222221 11223332 14568888884
Q ss_pred ccCcceEEecCC-chhHHHHHHhCCCeecc
Q 046077 344 HISTGGFLSHCG-WNSTMEAIVHGVPFLAW 372 (456)
Q Consensus 344 h~~~~~~I~hgG-~gt~~e~l~~GvP~v~~ 372 (456)
.+|.+|.-.. .+-..||.+.|+|+.+.
T Consensus 244 --~Adyii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 244 --AADYIISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred --hcceEEEecchhhhhHHHhccCCCeEEE
Confidence 4446665554 57788999999999776
No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.19 E-value=2.9 Score=33.19 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+|++.+.++-.|.....-++..|.++|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999887744
No 169
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=88.01 E-value=1.1 Score=40.88 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=57.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
|||+++..-+-|+ .||+.|.++|+ |.+-+..++....... ..+...... +.. . -...+.
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~~~~--~~~~~~v~~---G~l----g------~~~~l~ 59 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGELLKP--ELPGLEVRV---GRL----G------DEEGLA 59 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhhhcc--ccCCceEEE---CCC----C------CHHHHH
Confidence 5778877655554 79999999999 6665555443333321 001122211 111 0 245677
Q ss_pred HHHhhhcCCCCCCCCcEEE--ecCCc----ccHHHHHHHcCCCeEEE
Q 046077 83 ANLASRSENPDFPAPLCAI--VDFQV----GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI--~D~~~----~~~~~~A~~lgIP~v~~ 123 (456)
+++++. ++++|| +.++. --+..+|+.+|||++.|
T Consensus 60 ~~l~~~-------~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 60 EFLREN-------GIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHhC-------CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 777776 899988 44442 34457899999999997
No 170
>PRK12342 hypothetical protein; Provisional
Probab=87.67 E-value=2.4 Score=38.73 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCc--CC-C-CCCCC-CCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILV--SA-I-PPSFT-QYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPD 93 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~--~~-~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (456)
.+..|-+|++.|.+||.++-.+.. .. + .+..+ +. =+-+-+.+....+ .........+...+++.
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGa--D~avli~d~~~~g----~D~~ata~~La~~i~~~----- 108 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGP--HSLYLVQDAQLEH----ALPLDTAKALAAAIEKI----- 108 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCC--CEEEEEecCccCC----CCHHHHHHHHHHHHHHh-----
Confidence 477788888779999998844321 11 1 11111 11 1223333332221 12333556677777766
Q ss_pred CCCCcEEEecCCc------ccHHHHHHHcCCCeEEEec
Q 046077 94 FPAPLCAIVDFQV------GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 94 ~~~pD~vI~D~~~------~~~~~~A~~lgIP~v~~~~ 125 (456)
++|+|++.-.+ .-+..+|+.||+|++++..
T Consensus 109 --~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 --GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred --CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 79999965322 3468899999999999743
No 171
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=87.45 E-value=1.9 Score=36.84 Aligned_cols=106 Identities=13% Similarity=-0.010 Sum_probs=57.1
Q ss_pred EcCCCccCHHHHHHHHHHH-HhC-CCEEEEEcCCCCcCCC-----CCCCCCCCCeEEEecCCCCCCCCCC----chHHHH
Q 046077 8 VTGYWQGHLQPCIELCKNF-SSR-NYHTTLIIPSILVSAI-----PPSFTQYPRTRTTQITSSGRPMPPS----DPLSQQ 76 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L-~~~-Gh~Vt~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~ 76 (456)
+-.++-||..=++.|.+.+ .++ .++..+++..+....- ++... ....+..++....-.... ......
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceEEEechhhHhhHHHHHHH
Confidence 4457889999999999999 333 5555556555322221 11100 011233333222111111 112222
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcEEEecC--CcccHHHHHHHc------CCCeEEE
Q 046077 77 AAKDLEANLASRSENPDFPAPLCAIVDF--QVGWTKAIFWKF------NIPVVSL 123 (456)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~--~~~~~~~~A~~l------gIP~v~~ 123 (456)
....+.-+. +. +||+||+.. .+.+...+|+.+ |.+.|..
T Consensus 81 ~~~~~~il~-r~-------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 81 FLQSLRILR-RE-------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHHHH-Hh-------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 222222222 22 899999885 457788899999 9999876
No 172
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=87.05 E-value=29 Score=33.23 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH---hhcccCcceEEecCC----chh
Q 046077 288 REEYRELAGALEES--PGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL---ILNHISTGGFLSHCG----WNS 358 (456)
Q Consensus 288 ~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~---~l~h~~~~~~I~hgG----~gt 358 (456)
-+.+.+++..+-+. +++|++.-.+.+...+.+.+++....+.+.+.+-+||++ +| .+-+.|++-+= ..+
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl--~~G~IFlntSlTEafc~~ 287 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVL--VRGDIFLNTSLTEAFCMV 287 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHH--hcCcEEeccHHHHHHHHH
Confidence 45566655544443 566654432222223334444444567789999999886 45 33346665543 246
Q ss_pred HHHHHHhCCCeecc
Q 046077 359 TMEAIVHGVPFLAW 372 (456)
Q Consensus 359 ~~e~l~~GvP~v~~ 372 (456)
+.||..+|.|+|.-
T Consensus 288 ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 288 IVEAASCGLPVVST 301 (426)
T ss_pred HHHHHhCCCEEEEe
Confidence 78999999999854
No 173
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=86.97 E-value=6.3 Score=36.19 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchH-HHHHHHHHHHHHhhhcCCCCCCC
Q 046077 18 PCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPL-SQQAAKDLEANLASRSENPDFPA 96 (456)
Q Consensus 18 P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~ 96 (456)
-+.+|++.|.+.| +|+++.|..-++......+....++...+.....+.+..... .+-..-.+..+ .. +
T Consensus 15 Gi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal~~l--~~-------~ 84 (266)
T PRK13934 15 GLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLATYGL--GR-------K 84 (266)
T ss_pred HHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHHHhc--cC-------C
Confidence 4667899998887 799998887666665554444456666654211110000011 11111222222 11 8
Q ss_pred CcEEEec----------CCc-cc---HHHHHHHcCCCeEEEec
Q 046077 97 PLCAIVD----------FQV-GW---TKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 97 pD~vI~D----------~~~-~~---~~~~A~~lgIP~v~~~~ 125 (456)
||+||+. ... .+ +..-|-.+|||.+.++.
T Consensus 85 pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 85 YDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred CCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 9999953 122 22 33445677999999865
No 174
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.94 E-value=9.9 Score=36.18 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=83.9
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHH---hCCCCEEEEEcCCC-CCcCcchh----hhhhCCCCeEE-ecccCHH---Hhh
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALE---ESPGPFIWVVQPGS-EEYMPHDL----DNRVSNRGLII-HAWAPQA---LIL 342 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~-~~~~~~~~----~~~~~~~~v~~-~~~vp~~---~~l 342 (456)
.+.|-.|..+..++..++.+ ++|. ..+.++++-++-+. ++..-+.. .+..+.+++.+ .+++|.+ .+|
T Consensus 185 ~ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred ceEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 55666788887776665543 2332 23566666655432 11111111 12223356654 5688844 578
Q ss_pred cccCcceEEec--CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 343 NHISTGGFLSH--CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 343 ~h~~~~~~I~h--gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
...+++.|.|. =|.|++.-++..|+|+++- .+-+++-...+ + |+=+.-. .+.++...|+++=+++.+
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~---~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFY---GDELDEALVREAQRQLAN 332 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEec---cccCCHHHHHHHHHHHhh
Confidence 66665555554 4899999999999999987 56666666555 4 7766653 257899999998887764
No 175
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=84.22 E-value=4.6 Score=35.49 Aligned_cols=104 Identities=6% Similarity=-0.108 Sum_probs=61.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC-CCCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF-TQYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
.+|++.+.++-.|-....-++..|..+|++|++++..--.+.+-+.. .. +..+..++.... .....+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~----------~~~~~~ 152 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMT----------TTMYGQ 152 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccc----------cCHHHH
Confidence 58999999999999999999999999999999998664333222211 01 233333322111 112223
Q ss_pred HHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCe
Q 046077 82 EANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPV 120 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~ 120 (456)
+++++.+.+.+...++.++|+.... ....|+.+|.=.
T Consensus 153 ~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~ 189 (197)
T TIGR02370 153 KDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADV 189 (197)
T ss_pred HHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcE
Confidence 4444444322111146677777543 346777777543
No 176
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=84.15 E-value=12 Score=34.28 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC--CCCCCCCc-hHHHHHHHHHHHHHhhhcCCCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS--GRPMPPSD-PLSQQAAKDLEANLASRSENPDFP 95 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~ 95 (456)
+.+|++.|.+ +|+|+++.|..-++......+....++...+... ........ ...+-..-.+..++. .
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~lal~~l~~-~------- 86 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRVALDKLVP-D------- 86 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHHHHHHhcC-C-------
Confidence 6778888865 6899999988776665555444445666665421 11100000 111122233333332 1
Q ss_pred CCcEEEec----------CCcc---cHHHHHHHcCCCeEEEec
Q 046077 96 APLCAIVD----------FQVG---WTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 96 ~pD~vI~D----------~~~~---~~~~~A~~lgIP~v~~~~ 125 (456)
+||+||+. .+.. .+..-|-.+|||.+.++.
T Consensus 87 ~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 87 NIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 89999964 2222 334455678999998865
No 177
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.21 E-value=2.7 Score=34.53 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=36.1
Q ss_pred CC-ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 1 ME-REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 1 m~-~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
|+ ++|++.+.++-+|-.-..-++..|..+|++|++++..-
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 64 49999999999999999999999999999999998654
No 178
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=83.03 E-value=8.4 Score=30.48 Aligned_cols=36 Identities=6% Similarity=-0.019 Sum_probs=32.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
++++.+.+..-|-.-+..||..|.++||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 688999999999999999999999999999998444
No 179
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.94 E-value=6.8 Score=35.91 Aligned_cols=94 Identities=13% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHHHHHhC--CCEEEEEcCCCCc----CCCCCCCC-CCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCC
Q 046077 19 CIELCKNFSSR--NYHTTLIIPSILV----SAIPPSFT-QYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSEN 91 (456)
Q Consensus 19 ~l~LA~~L~~~--Gh~Vt~~~~~~~~----~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 91 (456)
.+..|-+|+++ |.+||.++-.+-. +.+....+ +. =+-+.+.+....+ .........+...+++.
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGa--D~avli~d~~~~g----~D~~~tA~~La~ai~~~--- 111 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGP--DELIVVIDDQFEQ----ALPQQTASALAAAAQKA--- 111 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCC--CEEEEEecCcccC----cCHHHHHHHHHHHHHHh---
Confidence 47778888886 3799999844321 11221111 11 1222333332221 12334556677777776
Q ss_pred CCCCCCcEEEecCC------cccHHHHHHHcCCCeEEEec
Q 046077 92 PDFPAPLCAIVDFQ------VGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 92 ~~~~~pD~vI~D~~------~~~~~~~A~~lgIP~v~~~~ 125 (456)
.+|+|++.-. ..-+..+|+.||+|++++..
T Consensus 112 ----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 ----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred ----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 8999996532 23567899999999999744
No 180
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=82.64 E-value=12 Score=34.15 Aligned_cols=98 Identities=10% Similarity=-0.026 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC-CCCCCCCch-HHHHHHHHHHHHHhhhcCCCCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS-GRPMPPSDP-LSQQAAKDLEANLASRSENPDFPA 96 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~ 96 (456)
+.+|++.|.+ +|+|+++.|..-++......+....++...+... ......... ..+-..-.+..++. . +
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~lal~~~~~----~----~ 86 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLGYDVIMD----K----K 86 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHHHHhhcc----C----C
Confidence 5677888865 6899999998776666655544334666555421 111010011 11222233333332 1 8
Q ss_pred CcEEEec----------CCcc---cHHHHHHHcCCCeEEEec
Q 046077 97 PLCAIVD----------FQVG---WTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 97 pD~vI~D----------~~~~---~~~~~A~~lgIP~v~~~~ 125 (456)
||+||+. .+.. .+..-|-.+|||.+.++.
T Consensus 87 pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 87 VDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 9999964 2222 333445667999999865
No 181
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.11 E-value=15 Score=34.56 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=76.4
Q ss_pred EEEecCCCCCCCHHHHHHH--HHHHHhCCCCEEEEEcCC-CCCcCcchh----hhhhCCCCeE-EecccC---HHHhhcc
Q 046077 276 LYVAFGSEVGPTREEYREL--AGALEESPGPFIWVVQPG-SEEYMPHDL----DNRVSNRGLI-IHAWAP---QALILNH 344 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~~--~~al~~~~~~~i~~~~~~-~~~~~~~~~----~~~~~~~~v~-~~~~vp---~~~~l~h 344 (456)
+-|-.|..+..+++.+..+ +.-....++++++-++-+ .++..-+.. .+..+.+++. +.+++| ...+|..
T Consensus 147 ~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~ 226 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQ 226 (322)
T ss_pred eEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHh
Confidence 4455677777666555442 222233455666666542 111111111 1122224544 445666 5568877
Q ss_pred cCcceEEec--CCchhHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHH
Q 046077 345 ISTGGFLSH--CGWNSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIE 413 (456)
Q Consensus 345 ~~~~~~I~h--gG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 413 (456)
.+++.|+|+ =|.||+.-.+..|+|+++- .+-++|-...+ . |+-+.... +.++...+.++=+
T Consensus 227 ~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~---d~L~~~~v~e~~r 289 (322)
T PRK02797 227 CDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG---DDLDEDIVREAQR 289 (322)
T ss_pred CCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC---CcccHHHHHHHHH
Confidence 777777775 4899999999999999987 55566666555 4 77775432 4677776766533
No 182
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=81.71 E-value=3.9 Score=30.68 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPAPL 98 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD 98 (456)
++.+++.|.+.|+++ ++|.. ..+.+.+. ++....+-.....+ .+.+.+++++- ++|
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~-----Gi~~~~~~~ki~~~----------~~~i~~~i~~g-------~id 57 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREA-----GLPVKTLHPKVHGG----------ILAILDLIKNG-------EID 57 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHC-----CCcceeccCCCCCC----------CHHHHHHhcCC-------CeE
Confidence 478999999999998 45443 33444444 45432111000000 01244455544 999
Q ss_pred EEEecCC---------cccHHHHHHHcCCCeEE
Q 046077 99 CAIVDFQ---------VGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 99 ~vI~D~~---------~~~~~~~A~~lgIP~v~ 122 (456)
+||.... ......+|...+||+++
T Consensus 58 ~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 58 LVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred EEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 9996432 22445678999999863
No 183
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=81.26 E-value=16 Score=32.61 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCE-EEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYH-TTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~-Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
+-|+|.-.|+-|--.....|.+.|+++|++ +..+..++.. -+++. - ........+.++..+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl-g~~~n------s-----------~y~~s~~EK~lRg~L 63 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESL-GIEKN------S-----------NYGDSQAEKALRGKL 63 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhc-CCCCc------c-----------cccccHHHHHHHHHH
Confidence 468899999999999999999999999986 4444433221 12221 0 111123334455556
Q ss_pred HHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 82 EANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
+..+++... +=|+||+|..-
T Consensus 64 ~S~v~R~Ls-----k~~iVI~DslN 83 (281)
T KOG3062|consen 64 RSAVDRSLS-----KGDIVIVDSLN 83 (281)
T ss_pred HHHHHhhcc-----cCcEEEEeccc
Confidence 665554322 66999999653
No 184
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=80.69 E-value=20 Score=32.98 Aligned_cols=98 Identities=7% Similarity=-0.055 Sum_probs=55.1
Q ss_pred HHHHHHHHHhC---CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCC
Q 046077 19 CIELCKNFSSR---NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFP 95 (456)
Q Consensus 19 ~l~LA~~L~~~---Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 95 (456)
+.+|++.|.+. |++|+++.|..-++......+....++...+..+...-.. ...+-..-.+..++...
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~yav~G--TPaDCV~lal~~~~~~~------- 86 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEG--SPADCVLAALYDVMKDA------- 86 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCeEEEcC--chHHHHHHHHHHhcCCC-------
Confidence 34567777653 4799999998776666665554445777766522100000 11112233344444212
Q ss_pred CCcEEEec----------CCcc---cHHHHHHHcCCCeEEEec
Q 046077 96 APLCAIVD----------FQVG---WTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 96 ~pD~vI~D----------~~~~---~~~~~A~~lgIP~v~~~~ 125 (456)
+||+||+. .+.. .+..-|-.+|||.+.++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 89999964 2222 233445678999999864
No 185
>PRK07206 hypothetical protein; Provisional
Probab=80.66 E-value=7.6 Score=38.56 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+++++++-..+.| ..+++.+.++|+++..++........-.. .+.... ...... . .....
T Consensus 1 ~~k~~liv~~~~~~-----~~~~~a~~~~G~~~v~v~~~~~~~~~~~~-----~~~~~~----~~~~i~-~----~~~~~ 61 (416)
T PRK07206 1 MMKKVVIVDPFSSG-----KFLAPAFKKRGIEPIAVTSSCLLDPYYYA-----SFDTSD----FIEVII-N----GDIDD 61 (416)
T ss_pred CCCeEEEEcCCchH-----HHHHHHHHHcCCeEEEEEcCCCCchhhhc-----ccCccc----chhhhc-C----CCHHH
Confidence 88899999865443 46889999999998888755321110000 000000 000000 0 11224
Q ss_pred HHHHHhhhcCCCCCCCCcEEE--ecCCcccHHHHHHHcCCCe
Q 046077 81 LEANLASRSENPDFPAPLCAI--VDFQVGWTKAIFWKFNIPV 120 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI--~D~~~~~~~~~A~~lgIP~ 120 (456)
+.+++++. ++|.|| +|.....+..+++.+|+|+
T Consensus 62 l~~~~~~~-------~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 62 LVEFLRKL-------GPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred HHHHHHHc-------CCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 44455555 899999 4544556667888899984
No 186
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=80.65 E-value=19 Score=32.90 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCch-HHHHHHHHHHHHHhhhcCCCCCCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDP-LSQQAAKDLEANLASRSENPDFPAP 97 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~p 97 (456)
+.+|++.|.+. |+|+++.|..-++......+....+++..+.... ..... ..+-..-.+..++. . +|
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~---~~v~GTPaDcV~~gl~~l~~----~----~p 83 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNGF---YAVDGTPTDCVHLALNGLLD----P----KP 83 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCCe---EEECCcHHHHHHHHHHhhcc----C----CC
Confidence 56789999888 7999999988776666665554457777664221 00011 11122233333332 1 89
Q ss_pred cEEEecC----------Ccc---cHHHHHHHcCCCeEEEec
Q 046077 98 LCAIVDF----------QVG---WTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 98 D~vI~D~----------~~~---~~~~~A~~lgIP~v~~~~ 125 (456)
|+||+.. +.. .+..-|-.+|||.+.++-
T Consensus 84 DlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 84 DLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 9999642 222 333445668999999864
No 187
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.93 E-value=22 Score=30.94 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=59.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc-CCCCCCC-CCCCCeEEEecCCCCC-CCCCCchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV-SAIPPSF-TQYPRTRTTQITSSGR-PMPPSDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (456)
.|.+++..+.|=....+.+|-+.+.+|++|.++=.-... ..-+... ...+++.+.....+.. ...............
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~ 103 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREG 103 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHH
Confidence 788999999999999999999999999999998422211 1111110 1224677777655421 111112223333334
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
+....+.+... +.|+||-|-..
T Consensus 104 ~~~a~~~l~~~----~ydlvVLDEi~ 125 (191)
T PRK05986 104 WEEAKRMLADE----SYDLVVLDELT 125 (191)
T ss_pred HHHHHHHHhCC----CCCEEEEehhh
Confidence 44444433332 89999999653
No 188
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.91 E-value=13 Score=32.74 Aligned_cols=37 Identities=5% Similarity=-0.130 Sum_probs=33.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
.+|++.+.++-.|-....=++..|..+|++|++++..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 5899999999999999999999999999999988754
No 189
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=77.68 E-value=14 Score=31.16 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=53.8
Q ss_pred hHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecc-cCHH
Q 046077 261 EEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAW-APQA 339 (456)
Q Consensus 261 ~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-vp~~ 339 (456)
.++-++|.+.. ...|+.|.. -.+..+.++..+.+-+++=++..... .......-....++ -+..
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~-------~~~~~~~~~i~~~~~~~Rk 85 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDF-------AGNPYLTIKVKTGMNFARN 85 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhc-------cCCCCceEEEECCCcchHH
Confidence 46667787654 455664433 34555666666666666644432110 10001111222333 3344
Q ss_pred HhhcccCcceEEecCCchhHH---HHHHhCCCeeccCC
Q 046077 340 LILNHISTGGFLSHCGWNSTM---EAIVHGVPFLAWPI 374 (456)
Q Consensus 340 ~~l~h~~~~~~I~hgG~gt~~---e~l~~GvP~v~~P~ 374 (456)
.++...+-.+++--||.||+. |++.+++|+++++.
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 444333334666678899876 56889999999874
No 190
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=76.04 E-value=40 Score=28.10 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=69.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCC
Q 046077 276 LYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCG 355 (456)
Q Consensus 276 v~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG 355 (456)
|-|-.||.. +....+++...|++.|..+-+-+... ...|+.+.+.. .. +.+-.++++|.=+|
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--HR~p~~l~~~~-----------~~---~~~~~~~viIa~AG 64 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--HRTPERLLEFV-----------KE---YEARGADVIIAVAG 64 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--TTSHHHHHHHH-----------HH---TTTTTESEEEEEEE
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--cCCHHHHHHHH-----------HH---hccCCCEEEEEECC
Confidence 444455543 56777788999988886665444332 23344443221 11 22223457888777
Q ss_pred chhH----HHHHHhCCCeeccCCccchhh----HHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 046077 356 WNST----MEAIVHGVPFLAWPIRGDQYF----NAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAI 427 (456)
Q Consensus 356 ~gt~----~e~l~~GvP~v~~P~~~dQ~~----na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 427 (456)
...- ..++ .-+|+|.+|....+.. ....++---|+++..-.- ....++..+.-.|-. +.|++++++.+.
T Consensus 65 ~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~d~~l~~kl~~ 141 (150)
T PF00731_consen 65 MSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LKDPELREKLRA 141 (150)
T ss_dssp SS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred Ccccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 5433 3333 3789999998766432 122222112565544211 123445555555533 368899999988
Q ss_pred HHHHHHh
Q 046077 428 LQVKFEQ 434 (456)
Q Consensus 428 l~~~~~~ 434 (456)
.+++.++
T Consensus 142 ~~~~~~~ 148 (150)
T PF00731_consen 142 YREKMKE 148 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887764
No 191
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=74.76 E-value=14 Score=37.03 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=55.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+++++.. +-...+.|++-|.+-|-+|..+......+.... +..+ . ... ... ..++
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------~~~~--~---~~~--~D~-~~l~ 366 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------LPVE--T---VVI--GDL-EDLE 366 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------CCcC--c---EEe--CCH-HHHH
Confidence 4666654 335778999999999999988876644322111 0000 0 000 001 3556
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
+++++. +||++|++. ....+|+++|||++..
T Consensus 367 ~~i~~~-------~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 367 DLACAA-------GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHhhc-------CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 677766 899999885 4588999999999975
No 192
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=74.70 E-value=46 Score=31.19 Aligned_cols=107 Identities=13% Similarity=-0.068 Sum_probs=63.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC----------CCCCCeEEEecCCCCCCCCCCchH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF----------TQYPRTRTTQITSSGRPMPPSDPL 73 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~ 73 (456)
.|.|.-.|+-|-=.=.=.|.++|.++||+|.++..++...+---+. +..|++-+.++|.... ..-
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~-----lGG 127 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT-----LGG 127 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc-----chh
Confidence 5678888899987777789999999999999998665333221111 1234555555443322 122
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcc--cHHHHHHHcCCCeEE
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVG--WTKAIFWKFNIPVVS 122 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgIP~v~ 122 (456)
..+.....-.+++.. .+|+||..-... .=..+++...+=.+.
T Consensus 128 lS~at~~~i~~ldAa-------G~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 128 LSRATREAIKLLDAA-------GYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred hhHHHHHHHHHHHhc-------CCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 222333334444444 999999885543 334566666654444
No 193
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=74.54 E-value=18 Score=32.62 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCCH-HHHHHHHHHHHhCCCCEEEE
Q 046077 275 VLYVAFGSEVGPTR-EEYRELAGALEESPGPFIWV 308 (456)
Q Consensus 275 vv~v~~GS~~~~~~-~~~~~~~~al~~~~~~~i~~ 308 (456)
.++|+|.-....+. +......+.|++.+..+|+.
T Consensus 152 ~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vva 186 (229)
T PRK06732 152 ITLVGFKLLVNVSKEELIKVARASLIKNQADYILA 186 (229)
T ss_pred cEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 56788877665443 44445677787788887744
No 194
>PRK09620 hypothetical protein; Provisional
Probab=73.92 E-value=22 Score=32.03 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCEEEEEcCC
Q 046077 20 IELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 20 l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
..||++|.++|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999755
No 195
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.39 E-value=64 Score=28.38 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=73.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEE
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFL 351 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I 351 (456)
.++++.|+.|.++ ...++.|.+.|..+.++. +. ..+.+........+.+........-+ ..++++|
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----~~~~l~~l~~~~~i~~~~~~~~~~~l--~~adlVi 75 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----LTENLVKLVEEGKIRWKQKEFEPSDI--VDAFLVI 75 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----CCHHHHHHHhCCCEEEEecCCChhhc--CCceEEE
Confidence 4558888877654 345666767777766553 22 11233333322335444433334445 3455888
Q ss_pred ecCCchhHHHHHH----hCCCeeccCCccchhhH-----HHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC--HH
Q 046077 352 SHCGWNSTMEAIV----HGVPFLAWPIRGDQYFN-----AKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD--EE 420 (456)
Q Consensus 352 ~hgG~gt~~e~l~----~GvP~v~~P~~~dQ~~n-----a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~--~~ 420 (456)
.--+.-.+.+.++ .++++-++ |.+.. -..+. +-++-+.+..++..-.-+..|++.|..++.. .+
T Consensus 76 aaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~-~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~ 150 (202)
T PRK06718 76 AATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALH-RGKLTISVSTDGASPKLAKKIRDELEALYDESYES 150 (202)
T ss_pred EcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEE-cCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHH
Confidence 8777666555443 45555443 32222 22233 2134444432211122335577777766632 24
Q ss_pred HHHHHHHHHHHHHhc
Q 046077 421 MKTRAAILQVKFEQG 435 (456)
Q Consensus 421 ~~~~a~~l~~~~~~~ 435 (456)
+.+.+.++++.+++.
T Consensus 151 ~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 151 YIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777777664
No 196
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.20 E-value=3.3 Score=36.02 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=47.8
Q ss_pred cCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCC-CcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHH
Q 046077 9 TGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSI-LVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANL 85 (456)
Q Consensus 9 ~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 85 (456)
=..+.|-++-...|+++|.++ |++|.+-++.. ..+.+.+.. .+.+...-+|.+ ....++..+
T Consensus 27 Ha~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~--~~~v~~~~~P~D-------------~~~~~~rfl 91 (186)
T PF04413_consen 27 HAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL--PDRVDVQYLPLD-------------FPWAVRRFL 91 (186)
T ss_dssp E-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG---GGG-SEEE---S-------------SHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC--CCCeEEEEeCcc-------------CHHHHHHHH
Confidence 346789999999999999987 89988877543 222222210 011222223322 234567788
Q ss_pred hhhcCCCCCCCCcEEE-ecC-CcccHHHHHHHcCCCeEEEe
Q 046077 86 ASRSENPDFPAPLCAI-VDF-QVGWTKAIFWKFNIPVVSLF 124 (456)
Q Consensus 86 ~~~~~~~~~~~pD~vI-~D~-~~~~~~~~A~~lgIP~v~~~ 124 (456)
+.+ +||++| ... +.+-....|+..|||.+..+
T Consensus 92 ~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 92 DHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHH---------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred HHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 888 899987 333 33344567888899999873
No 197
>PLN02470 acetolactate synthase
Probab=73.06 E-value=18 Score=37.79 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred ecCCCCCCCH--HHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecc--------cCHHHhhcccCcc
Q 046077 279 AFGSEVGPTR--EEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAW--------APQALILNHISTG 348 (456)
Q Consensus 279 ~~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------vp~~~~l~h~~~~ 348 (456)
+|||....+. ...+.+++.|++.|++.++-+.++... .-+......++++++.- .-...-..+-..+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~---~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~g 78 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM---EIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVG 78 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH---HHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCE
Confidence 4666666552 224457788888888887776554321 11111111223333221 1111111223466
Q ss_pred eEEecCCch------hHHHHHHhCCCeeccC
Q 046077 349 GFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 349 ~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
++++|.|-| .+.+|...++|+|++.
T Consensus 79 v~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 79 VCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 899999966 6679999999999994
No 198
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=72.94 E-value=27 Score=30.11 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhh--hhhC---CCCeEEeccc
Q 046077 262 EVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLD--NRVS---NRGLIIHAWA 336 (456)
Q Consensus 262 ~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~--~~~~---~~~v~~~~~v 336 (456)
++-+++.... ..+|+.|.. ...+..++++..+.+-.++=++ |..+. +... ...+.+.+.-
T Consensus 23 ~lG~~la~~g---~~lV~GGg~----~GlM~a~a~ga~~~gG~viGi~--------p~~l~~~~~~~~~~~~~i~~~~~~ 87 (178)
T TIGR00730 23 ELGAYLAGQG---WGLVYGGGR----VGLMGAIADAAMENGGTAVGVN--------PSGLFSGEVVHQNLTELIEVNGMH 87 (178)
T ss_pred HHHHHHHHCC---CEEEECCCh----HhHHHHHHHHHHhcCCeEEEec--------chhhhhhhccCCCCCceEEECCHH
Confidence 5556776543 556666631 3355667777766665554222 22221 1001 1123333333
Q ss_pred CHHHhhcccCcceEEecCCchhHHHHHH---------hCCCeeccC
Q 046077 337 PQALILNHISTGGFLSHCGWNSTMEAIV---------HGVPFLAWP 373 (456)
Q Consensus 337 p~~~~l~h~~~~~~I~hgG~gt~~e~l~---------~GvP~v~~P 373 (456)
....+|...+-.+++--||.||+-|.+. +.+|++++=
T Consensus 88 ~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 88 ERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3444554445456777888999998743 489998873
No 199
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.59 E-value=5.1 Score=32.43 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=35.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPS 48 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 48 (456)
|||++...|+.+=+. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888888877777 999999999999999999988765555443
No 200
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=72.56 E-value=4.5 Score=31.03 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=51.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRN--YHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~G--h~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+|+++-.++.-| +||..|.+-- .+|.++-.......+.. . ..+ ...-...
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~~~~~--------~-~~~-------------~~~d~~~ 53 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTAELGK--------N-VPI-------------DITDPEE 53 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGGGTSE--------E-E-S--------------TT-HHH
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHHhhce--------e-cCC-------------CCCCHHH
Confidence 6899999999999 7899998753 33333322111111111 1 111 0112344
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecC---CcccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDF---QVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~---~~~~~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|+||..+ +.....+..+..|||++-
T Consensus 54 l~~~a~~~-------~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 54 LADFAKEN-------KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHT-------TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHc-------CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 55566655 999999764 556778888999999874
No 201
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=72.53 E-value=42 Score=28.42 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=22.4
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..++++|+|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44888888866 5679999999999995
No 202
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=71.85 E-value=40 Score=30.05 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=31.8
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 4 EIFVVTGY--WQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 4 ~il~~~~~--~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+|.++|++ +.|-..-.-.|+..|+++|++|.++-.+-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 56667776 88999999999999999999999997664
No 203
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=71.84 E-value=40 Score=34.82 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHhhcccCcceEEec---CCc-hhHHHHHHhCCCeeccCCccchhhHHHHHHHHh-ccEEEEecCCCC--cccHHHHHH
Q 046077 338 QALILNHISTGGFLSH---CGW-NSTMEAIVHGVPFLAWPIRGDQYFNAKLVVNYI-KVGLRVTDDLSE--TVKKGDIAE 410 (456)
Q Consensus 338 ~~~~l~h~~~~~~I~h---gG~-gt~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~-G~g~~~~~~~~~--~~~~~~l~~ 410 (456)
..+++ ..|+++|.- =|+ -++.||+++|+|+|.....+=- ..+..+...- ..|+.+...... ..+.+.|.+
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 55566 556678773 455 4889999999999998653311 1111121110 257777421111 234577888
Q ss_pred HHHHHhCC
Q 046077 411 GIERLMSD 418 (456)
Q Consensus 411 ~i~~~l~~ 418 (456)
++.++++.
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 88888854
No 204
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=71.58 E-value=20 Score=35.74 Aligned_cols=93 Identities=10% Similarity=-0.040 Sum_probs=52.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEA 83 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (456)
++.++..+.. .+.+++.|.+-|-+|..+++..-.....+.... .+. .+ +. . ... ...+...+ +
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~--~~~--~~--~~-~---v~~-~~dl~~~~-~ 349 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKR--WLE--ML--GV-E---VKY-RASLEDDM-E 349 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHH--HHH--hc--CC-C---cee-ccCHHHHH-H
Confidence 5666665554 889999999999999998766321111111000 000 00 00 0 000 00111122 3
Q ss_pred HHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 84 NLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 84 ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
++++. +||++|+.. -...+|+++|||.+..
T Consensus 350 ~l~~~-------~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 350 AVLEF-------EPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred HHhhC-------CCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 34444 999999883 4567899999999985
No 205
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.47 E-value=7.8 Score=30.27 Aligned_cols=84 Identities=5% Similarity=0.045 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 046077 14 GHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPD 93 (456)
Q Consensus 14 GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (456)
.+=.=++.+++.|.+.|+++ ++ ++...+.+.+. ++....+..... ....+.+++++-
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~a-T~gT~~~l~~~-----gi~~~~v~~~~~-----------~~~~i~~~i~~~----- 66 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VA-TEGTAKYLQEA-----GIPVEVVNKVSE-----------GRPNIVDLIKNG----- 66 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EE-chHHHHHHHHc-----CCeEEEEeecCC-----------CchhHHHHHHcC-----
Confidence 35567889999999999998 34 44344445544 555444322210 123456666655
Q ss_pred CCCCcEEEecCC-------cccHHHHHHHcCCCeEE
Q 046077 94 FPAPLCAIVDFQ-------VGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 94 ~~~pD~vI~D~~-------~~~~~~~A~~lgIP~v~ 122 (456)
++|+||..+. ..+....|-..|||+++
T Consensus 67 --~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 67 --EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred --CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 8999997431 24566789999999996
No 206
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=71.35 E-value=14 Score=33.95 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHh--CCCEEEEEcCC--CCcCCCCCCCC-CCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 046077 19 CIELCKNFSS--RNYHTTLIIPS--ILVSAIPPSFT-QYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPD 93 (456)
Q Consensus 19 ~l~LA~~L~~--~Gh~Vt~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (456)
.+..|-+|++ .|-+|+.++-. ...+.+....+ +. =+..-+.+.... ..........+.+.++..
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGa--Draili~d~~~~----~~d~~~ta~~Laa~~~~~----- 110 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGA--DRAILITDRAFA----GADPLATAKALAAAVKKI----- 110 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcCC--CeEEEEeccccc----CccHHHHHHHHHHHHHhc-----
Confidence 3566777887 46789988733 22222222110 11 111222222211 233344566777778877
Q ss_pred CCCCcEEEec-----C-CcccHHHHHHHcCCCeEEE
Q 046077 94 FPAPLCAIVD-----F-QVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 94 ~~~pD~vI~D-----~-~~~~~~~~A~~lgIP~v~~ 123 (456)
++|+||+. . ..--+..+|+.||+|++.+
T Consensus 111 --~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 111 --GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred --CCCEEEEecccccCCccchHHHHHHHhCCceeee
Confidence 89999843 2 3356678999999999987
No 207
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.68 E-value=64 Score=27.20 Aligned_cols=99 Identities=12% Similarity=-0.030 Sum_probs=56.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc-CCCCCC-CCCCCCeEEEecCCCCCCCCC-CchHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV-SAIPPS-FTQYPRTRTTQITSSGRPMPP-SDPLSQQAAKD 80 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~ 80 (456)
-|.+++.++.|=....+.+|-+.+.+|++|.++=.-... ..-+.. ....+++.+.....+..-... ...........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 467889999999999999999999999999994211110 011110 012346777776554321111 11222223333
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
++...+..... ++|+||-|-+.
T Consensus 84 ~~~a~~~~~~~----~~dLlVLDEi~ 105 (159)
T cd00561 84 WAFAKEAIASG----EYDLVILDEIN 105 (159)
T ss_pred HHHHHHHHhcC----CCCEEEEechH
Confidence 33333333222 89999999654
No 208
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.21 E-value=55 Score=36.10 Aligned_cols=105 Identities=13% Similarity=0.002 Sum_probs=63.3
Q ss_pred cccCHHHhhc-ccCcceEEec---CCchhH-HHHHHhCC---CeeccCCccchhhHHHHHHHHhc-cEEEEecCCCCccc
Q 046077 334 AWAPQALILN-HISTGGFLSH---CGWNST-MEAIVHGV---PFLAWPIRGDQYFNAKLVVNYIK-VGLRVTDDLSETVK 404 (456)
Q Consensus 334 ~~vp~~~~l~-h~~~~~~I~h---gG~gt~-~e~l~~Gv---P~v~~P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~~~~ 404 (456)
..+|+.+++. ...+++++.- -|+|.+ .|.++++. -++++.-+ -.-|. .+| -|+.+++ .+
T Consensus 446 ~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~----~L~~~AllVNP-----~D 513 (934)
T PLN03064 446 RSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQ----SLGAGAILVNP-----WN 513 (934)
T ss_pred cCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHH----HhCCceEEECC-----CC
Confidence 3456554322 2344466654 488755 49999965 12222211 11222 233 5777754 58
Q ss_pred HHHHHHHHHHHhC-CH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Q 046077 405 KGDIAEGIERLMS-DE-EMKTRAAILQVKFEQGFPASSVAALNAFSDFISR 453 (456)
Q Consensus 405 ~~~l~~~i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (456)
.++++++|.++|+ ++ +.+++.+++.+.+... +....++.+++.|.+
T Consensus 514 ~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~---d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 514 ITEVAASIAQALNMPEEEREKRHRHNFMHVTTH---TAQEWAETFVSELND 561 (934)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHH
Confidence 8999999999887 44 4556666666666654 778888888877753
No 209
>PRK05920 aromatic acid decarboxylase; Validated
Probab=69.97 E-value=6.3 Score=34.74 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=36.8
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAI 45 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 45 (456)
|++||++--.++.|= +=.+.+.+.|.+.||+|.++.++...+.+
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 788998887777666 68999999999999999999988765543
No 210
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.82 E-value=19 Score=31.18 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
-..||+++..+|++||++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4789999999999999999883
No 211
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=69.51 E-value=74 Score=27.49 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=69.4
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcc-hhhhhhCCCCeEEeccc-------CHHHhhcccC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPH-DLDNRVSNRGLIIHAWA-------PQALILNHIS 346 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~v-------p~~~~l~h~~ 346 (456)
+++...||.+.. ....+++.|.+.+..+-+++..+....+.. .+....+ ..++...|. .|..+..-++
T Consensus 4 Ill~vtGsiaa~---~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~-~~v~~~~~~~~~~~~~~hi~l~~~aD 79 (182)
T PRK07313 4 ILLAVSGSIAAY---KAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSK-NPVHLDVMDEHDPKLMNHIELAKRAD 79 (182)
T ss_pred EEEEEeChHHHH---HHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHHhC-CceEeccccccccCCccccccccccC
Confidence 566666666532 244566677767776666655443222222 1222221 123332222 2333322233
Q ss_pred cceEEecCCchhHHH-------------HHHh--CCCeeccCCcc----c---hhhHHHHHHHHhccEEEEecC------
Q 046077 347 TGGFLSHCGWNSTME-------------AIVH--GVPFLAWPIRG----D---QYFNAKLVVNYIKVGLRVTDD------ 398 (456)
Q Consensus 347 ~~~~I~hgG~gt~~e-------------~l~~--GvP~v~~P~~~----d---Q~~na~~~~~~~G~g~~~~~~------ 398 (456)
..+|.-+=+||+.. +++. ++|+|++|--. . -..|..+++ .+|+=+.-...
T Consensus 80 -~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~vi~p~~g~la~~ 157 (182)
T PRK07313 80 -LFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLK-EDGVQEIEPKEGLLACG 157 (182)
T ss_pred -EEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHH-HCCCEEECCCCCccccC
Confidence 36677777776542 2455 89999999621 2 245677777 34655443320
Q ss_pred ---CCCcccHHHHHHHHHHHh
Q 046077 399 ---LSETVKKGDIAEGIERLM 416 (456)
Q Consensus 399 ---~~~~~~~~~l~~~i~~~l 416 (456)
..+-.+.++|.+.+.+.+
T Consensus 158 ~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 158 DEGYGALADIETILETIENTL 178 (182)
T ss_pred CccCCCCCCHHHHHHHHHHHh
Confidence 112345567777666655
No 212
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=69.16 E-value=31 Score=29.13 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.2
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..++++++|-| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44778877765 5568899999999995
No 213
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.90 E-value=9.6 Score=38.08 Aligned_cols=96 Identities=8% Similarity=0.015 Sum_probs=53.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
++++++.- -.-.+.|++.|.+.|-+|..+......+...+. +.+..-..... .......-...++
T Consensus 300 k~v~i~~~-----~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~------~~~~~~~~~~~----~~~v~~~d~~el~ 364 (428)
T cd01965 300 KRVAIAGD-----PDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKR------MELLASLEGIP----AEVVFVGDLWDLE 364 (428)
T ss_pred CEEEEEcC-----hHHHHHHHHHHHHcCCcceEEEEcCCCchhHHH------HHHhhhhcCCC----ceEEECCCHHHHH
Confidence 46666642 234678899999999988876654322221111 10000000000 0000001124455
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
+++++. +||+||++.. ...+|+++|||++.+
T Consensus 365 ~~i~~~-------~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 365 SLAKEE-------PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHhhcc-------CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 566666 8999999954 478899999999875
No 214
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=67.85 E-value=17 Score=28.71 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCC
Q 046077 15 HLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDF 94 (456)
Q Consensus 15 Hl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 94 (456)
+=.=++.+|+.|.+.|+++. + ++...+.+.+. ++....+......... . .+.+.+++++-
T Consensus 11 dk~~~~~~a~~l~~~G~~i~-a-T~gTa~~L~~~-----gi~~~~v~~~~~~~~~-~------~~~i~~~i~~~------ 70 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY-A-TEGTADFLLEN-----GIPVTPVAWPSEEPQN-D------KPSLRELLAEG------ 70 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE-E-ccHHHHHHHHc-----CCCceEeeeccCCCCC-C------chhHHHHHHcC------
Confidence 44568899999999999883 3 44333344443 3433333211000000 0 14566666664
Q ss_pred CCCcEEEecCC---------cccHHHHHHHcCCCeEE
Q 046077 95 PAPLCAIVDFQ---------VGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 95 ~~pD~vI~D~~---------~~~~~~~A~~lgIP~v~ 122 (456)
++|+||.-+. .......|-.+|||+++
T Consensus 71 -~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 71 -KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 8999997432 24566789999999974
No 215
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=67.79 E-value=33 Score=34.11 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=51.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEA 83 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (456)
+++++..+ +. .+.+++-|.+-|-+|..+.++.......+. .... ++......... .. .....+
T Consensus 282 kv~v~g~~--~~---~~~la~~L~elGmevv~~~t~~~~~~~~~~-----~~~~--l~~~~~~v~~~-~~----~~~~~~ 344 (416)
T cd01980 282 RVLVSGYE--GN---ELLVARLLIESGAEVPYVSTSIPKTSLSAP-----DYEW--LSALGVEVRYR-KS----LEDDIA 344 (416)
T ss_pred eEEEECCC--ch---hHHHHHHHHHcCCEEEEEecCCCChhhhHH-----HHHH--HHhcCCccccC-CC----HHHHHH
Confidence 55554433 33 667999999999999999886321111111 0000 00000000000 00 011123
Q ss_pred HHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 84 NLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 84 ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
.+++. +||++|+. .-+..+|+++|||.+.+
T Consensus 345 ~~~~~-------~pDl~Ig~---s~~~~~a~~~giP~~r~ 374 (416)
T cd01980 345 AVEEY-------RPDLAIGT---TPLVQYAKEKGIPALYY 374 (416)
T ss_pred HHhhc-------CCCEEEeC---ChhhHHHHHhCCCEEEe
Confidence 44444 99999988 34678999999999985
No 216
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.76 E-value=6.8 Score=39.20 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=54.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
++++++. +-.-.+.|++.|.+-|-+|..+..........+.... .+ ...+... ........-...+.
T Consensus 304 krv~i~g-----~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~--~l--~~~~~~~----~~~v~~~~d~~e~~ 370 (435)
T cd01974 304 KKFALYG-----DPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQA--LL--DASPYGA----GAKVYPGKDLWHLR 370 (435)
T ss_pred CEEEEEc-----ChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHH--HH--hhcCCCC----CcEEEECCCHHHHH
Confidence 4666554 2334788899999999999777654322211110000 00 0000000 00000011234456
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
+.+++. +||++|+.. ....+|+++|||++.+
T Consensus 371 ~~i~~~-------~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 371 SLLFTE-------PVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHhhc-------CCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 666666 899999985 4688999999999875
No 217
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=67.38 E-value=10 Score=29.84 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhh-hcCCCC
Q 046077 15 HLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLAS-RSENPD 93 (456)
Q Consensus 15 Hl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~ 93 (456)
+=.=++.+|+.|.+.|+++ ++| +.....+.+. ++....+...... ..+.+.+++++ -
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT-~gTa~~L~~~-----Gi~~~~v~~~~~~----------g~~~i~~~i~~~g----- 67 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FAT-GGTSRVLADA-----GIPVRAVSKRHED----------GEPTVDAAIAEKG----- 67 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EEC-cHHHHHHHHc-----CCceEEEEecCCC----------CCcHHHHHHhCCC-----
Confidence 3455789999999999988 344 3333444444 5555444322110 11445566665 4
Q ss_pred CCCCcEEEecC--C--------cccHHHHHHHcCCCeEE
Q 046077 94 FPAPLCAIVDF--Q--------VGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 94 ~~~pD~vI~D~--~--------~~~~~~~A~~lgIP~v~ 122 (456)
++|+||.-. . .....-+|-..+||+++
T Consensus 68 --~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 68 --KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred --CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 899998622 1 12334578888999997
No 218
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=67.01 E-value=30 Score=31.97 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHHHHHH-HhC-CCCEEEEEcCCCCCcCc-chhhhhhCCCC-eEEecccCHHHhhcccCcceEEecCCchhHHHHHH
Q 046077 289 EEYRELAGAL-EES-PGPFIWVVQPGSEEYMP-HDLDNRVSNRG-LIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV 364 (456)
Q Consensus 289 ~~~~~~~~al-~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~ 364 (456)
..+..++..+ +.. +..+++...+....... ..+.+.....+ +.+.+-++-.+++.+++ .+||-.+. +-.||+.
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~--~VvtinSt-vGlEAll 216 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSD--AVVTINST-VGLEALL 216 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCC--EEEEECCH-HHHHHHH
Confidence 3444444433 333 56666655542211111 12222222333 44556678788896555 88887643 6679999
Q ss_pred hCCCeeccC
Q 046077 365 HGVPFLAWP 373 (456)
Q Consensus 365 ~GvP~v~~P 373 (456)
+|+|+++..
T Consensus 217 ~gkpVi~~G 225 (269)
T PF05159_consen 217 HGKPVIVFG 225 (269)
T ss_pred cCCceEEec
Confidence 999999984
No 219
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=66.76 E-value=5.4 Score=38.89 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCeEEe-cccCHHHhhcccCcceEEecCCchhHHHHHHhCCCeeccCCccchhhHHHH----HHHHhccEEEEecCCCC
Q 046077 327 NRGLIIH-AWAPQALILNHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRGDQYFNAKL----VVNYIKVGLRVTDDLSE 401 (456)
Q Consensus 327 ~~~v~~~-~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~dQ~~na~~----~~~~~G~g~~~~~~~~~ 401 (456)
..++... +..+-.++| ..+|++||-- ...+.|.+..++|+|...+..|+....+- .+ ....|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll--~~aDiLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~-~~~pg~~~------ 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLL--AAADILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYE-EDLPGPIV------ 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHH--HT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TT-TSSSS-EE------
T ss_pred CCcEEECCCCCCHHHHH--HhcCEEEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchH-hhCCCcee------
Confidence 3456553 344566788 4566999997 45888999999999988776665432110 11 11233332
Q ss_pred cccHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhcC-CCChHHHHHH
Q 046077 402 TVKKGDIAEGIERLMSDEE-MKTRAAILQVKFEQGF-PASSVAALNA 446 (456)
Q Consensus 402 ~~~~~~l~~~i~~~l~~~~-~~~~a~~l~~~~~~~~-~~~~~~~~~~ 446 (456)
-+.++|.++|..++++++ +.++-++..+++-... |.++.+.++.
T Consensus 321 -~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~ 366 (369)
T PF04464_consen 321 -YNFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNY 366 (369)
T ss_dssp -SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHH
T ss_pred -CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 467999999999887654 5566677777776543 3344433333
No 220
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=66.68 E-value=5.4 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
|+|||.|+-.+..|. .+|..|+++||+|+++....
T Consensus 1 ~~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 1 MMARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CCceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHH
Confidence 889999999998886 67899999999999998653
No 221
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.47 E-value=10 Score=35.07 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=37.3
Q ss_pred CcceEEecCCchhHHHHHH------hCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIV------HGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~------~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+-||=||+..+++ .++|++.+-.. .+|... ..+.+++.+.+++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc------cCCHHHHHHHHHHHHcC
Confidence 3469999999999999986 47898888321 233322 35667777777777764
No 222
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=66.03 E-value=66 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
||++.+.++-.|-.-..-++.-|..+|++|.+.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6899999999999999999999999999999998653
No 223
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=65.42 E-value=11 Score=30.07 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=25.5
Q ss_pred ceEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 3 REIFVVTGYWQG---HLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 3 ~~il~~~~~~~G---Hl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
|+|+|+--|-.+ .-.-.++|+.+.++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 456666655333 235678999999999999999998764
No 224
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.29 E-value=33 Score=33.53 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.8
Q ss_pred CceEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 2 EREIFVVT-GYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~-~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
.++|.++- .|..|. .||+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 35788887 788886 7899999999999999864
No 225
>PRK13768 GTPase; Provisional
Probab=64.91 E-value=38 Score=31.02 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=36.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
|.+-+++...++.|=-.=...++..|.++|++|.++..++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 77888888889999999899999999999999999976653
No 226
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=64.88 E-value=21 Score=35.71 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
|.|+||++-.++..| +|++.|++.|++|..+-.
T Consensus 1 ~~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 1 MTMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred CceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 899999999998888 688899988987777633
No 227
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=64.55 E-value=21 Score=24.93 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q 046077 408 IAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 408 l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (456)
+.-.|.++|+|+++.+.|++ +..+.+ |-....|+++.++|.+-
T Consensus 36 FQlLitRLmnneeIsEeaQ~--EMA~eA--gi~~~rID~IA~fLNqW 78 (81)
T PF10820_consen 36 FQLLITRLMNNEEISEEAQQ--EMASEA--GIDEQRIDDIANFLNQW 78 (81)
T ss_pred HHHHHHHHhccHhhhHHHHH--HHHHHc--CCcHHHHHHHHHHHHHh
Confidence 34456788889999888873 444455 67788899999988764
No 228
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=64.41 E-value=20 Score=31.50 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=44.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCC-CCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPS-ILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAK 79 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (456)
++|+++.++.-.-+. +|.+.+.+. +++|.++.+. +.+. +.. .+...++.+..++.... ........
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~-~~~-~a~~~gIp~~~~~~~~~------~~~~~~~~ 70 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAY-GLE-RAEAAGIPTFVLDHKDF------PSREAFDA 70 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccch-HHH-HHHHcCCCEEEECcccc------CchhHhHH
Confidence 789999877633333 555667665 4777775433 2221 100 01112566665543221 11122334
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecC
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDF 104 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~ 104 (456)
.+.++++.+ +||++|+-.
T Consensus 71 ~~~~~l~~~-------~~D~iv~~~ 88 (200)
T PRK05647 71 ALVEALDAY-------QPDLVVLAG 88 (200)
T ss_pred HHHHHHHHh-------CcCEEEhHH
Confidence 566777777 999998643
No 229
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.00 E-value=1.3e+02 Score=28.09 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=26.1
Q ss_pred CCCccCHHHHHHHHHHHHh-CCCEEEEEcCCC
Q 046077 10 GYWQGHLQPCIELCKNFSS-RNYHTTLIIPSI 40 (456)
Q Consensus 10 ~~~~GHl~P~l~LA~~L~~-~Gh~Vt~~~~~~ 40 (456)
.--+|++--.-.||+.|++ +||.|.+-+.+.
T Consensus 11 iDNyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 11 IDNYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred hcccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 3468999999999999985 699999988664
No 230
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=63.85 E-value=17 Score=32.45 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=42.3
Q ss_pred ceEEEEcCCCccC--HHHHHHHHHHHHhC---CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHH
Q 046077 3 REIFVVTGYWQGH--LQPCIELCKNFSSR---NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQA 77 (456)
Q Consensus 3 ~~il~~~~~~~GH--l~P~l~LA~~L~~~---Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 77 (456)
|+|++.-+.-+|. +||.-.++++|... |++ +....+| ..+...
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~----------------------v~~~~lP----------v~f~~~ 49 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGAT----------------------VISRIVP----------NTFFES 49 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhccccccCCeE----------------------EEEEEeC----------eEehHH
Confidence 4588888876665 89999999999642 222 2222222 112334
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
.+.+.+++++. +||+||+=...
T Consensus 50 ~~~l~~~i~~~-------~Pd~Vi~~G~a 71 (222)
T PRK13195 50 IAAAQQAIAEI-------EPALVIMLGEY 71 (222)
T ss_pred HHHHHHHHHHH-------CCCEEEEeCcc
Confidence 55777788877 99999976543
No 231
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.54 E-value=1.1e+02 Score=27.09 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEE
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFL 351 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I 351 (456)
.++++.|+.|..+ ..-++.|.+.|..+.++...- .+.+.......++.+..--.....+. .++++|
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-----~~~l~~l~~~~~i~~~~~~~~~~dl~--~~~lVi 74 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-----ESELTLLAEQGGITWLARCFDADILE--GAFLVI 74 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-----CHHHHHHHHcCCEEEEeCCCCHHHhC--CcEEEE
Confidence 3458888877553 345566767888776554321 13343333333555433222233453 455888
Q ss_pred ecCCchhHH-----HHHHhCCCeecc--CCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC--HHHH
Q 046077 352 SHCGWNSTM-----EAIVHGVPFLAW--PIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD--EEMK 422 (456)
Q Consensus 352 ~hgG~gt~~-----e~l~~GvP~v~~--P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~--~~~~ 422 (456)
..-|...+. +|-..|+|+-++ |-..| +..-..+. .-++-+.+..+...-.-+..|++.|.+.+.+ .++.
T Consensus 75 ~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~-~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~ 152 (205)
T TIGR01470 75 AATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVD-RSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLA 152 (205)
T ss_pred ECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEE-cCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHH
Confidence 888876443 444568888444 22222 22222333 2134444432211222335677777777743 3466
Q ss_pred HHHHHHHHHHHhc
Q 046077 423 TRAAILQVKFEQG 435 (456)
Q Consensus 423 ~~a~~l~~~~~~~ 435 (456)
+.+.++++.+++.
T Consensus 153 ~~~~~~R~~~k~~ 165 (205)
T TIGR01470 153 TLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHhh
Confidence 6666777766654
No 232
>PRK04940 hypothetical protein; Provisional
Probab=63.40 E-value=27 Score=30.07 Aligned_cols=31 Identities=13% Similarity=-0.131 Sum_probs=26.3
Q ss_pred CCcEEEecCCc-ccHHHHHHHcCCCeEEEech
Q 046077 96 APLCAIVDFQV-GWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 96 ~pD~vI~D~~~-~~~~~~A~~lgIP~v~~~~~ 126 (456)
+++++|+.++. +|+.-+|+.+|+|.|.++|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46888988775 79999999999999998664
No 233
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=62.44 E-value=16 Score=34.05 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAI 45 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 45 (456)
|.++|.|+-.+..|. .+|+.|+++||.|.++..+...+..
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATL 41 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHH
Confidence 567899999998887 6899999999999999877655433
No 234
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=62.15 E-value=59 Score=28.38 Aligned_cols=103 Identities=13% Similarity=0.197 Sum_probs=58.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHH
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEAN 84 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (456)
.+++....-|-..-+|.-++....+|-.|.++++.--.........+--|+....... . ....+.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i------------~-~~~~i~~~ 73 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVI------------P-SDTDIFDE 73 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceec------------C-ChHHHHHH
Confidence 3555555779999999999999999999999987642211111100001222111110 0 11223333
Q ss_pred HhhhcCCCCCCCCcEEEecCCcc-------cHHHHHHHcCCCeEEE
Q 046077 85 LASRSENPDFPAPLCAIVDFQVG-------WTKAIFWKFNIPVVSL 123 (456)
Q Consensus 85 l~~~~~~~~~~~pD~vI~D~~~~-------~~~~~A~~lgIP~v~~ 123 (456)
+...... +..|+|+.|-..+ -...+|..+|||++.+
T Consensus 74 i~~~~~~---~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 74 IAALHEK---PPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred HHhcccC---CCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 3332111 1368999994322 2346889999999987
No 235
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.15 E-value=13 Score=34.80 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+-||=||+.++++. ++|++.+-.. .+|... ..+.+++.++|.+++++
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT------DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc------cCCHHHHHHHHHHHHcC
Confidence 45699999999999999874 6788877311 234322 35678888888888754
No 236
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=62.13 E-value=90 Score=25.79 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=21.4
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..++++|+|-| .+.++...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 44888887755 5678899999999995
No 237
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=61.04 E-value=17 Score=31.57 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcEEEecCCc-ccHHHHHHHcCCCeEEEechh
Q 046077 75 QQAAKDLEANLASRSENPDFPAPLCAIVDFQV-GWTKAIFWKFNIPVVSLFTFG 127 (456)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~-~~~~~~A~~lgIP~v~~~~~~ 127 (456)
......+++++++... +..++|+.++. +++..+|+.+|+|.|.++|+-
T Consensus 43 ~~a~~~l~~~i~~~~~-----~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 43 EEAIAQLEQLIEELKP-----ENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHHHHhCCC-----CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3455677788887722 22477777774 688889999999999986653
No 238
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=60.95 E-value=17 Score=36.28 Aligned_cols=90 Identities=9% Similarity=-0.072 Sum_probs=51.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
.|+||++-.++.=| +||+.|++.++...+++.+.+....... .....+.. .. -...+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~~-------~~~~~~~~-------~~----d~~~l 60 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDDE-------LLPADSFS-------IL----DKSSV 60 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhccc-------cccccCcC-------cC----CHHHH
Confidence 36999999998888 7999999988654544444322111000 00000000 01 12233
Q ss_pred HHHHhhhcCCCCCCCCcEEEecCCc---ccHHHHHHHcCCCeE
Q 046077 82 EANLASRSENPDFPAPLCAIVDFQV---GWTKAIFWKFNIPVV 121 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D~~~---~~~~~~A~~lgIP~v 121 (456)
.++.++. ++|+||.+.-. .....+++++|||+.
T Consensus 61 ~~~a~~~-------~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 61 QSFLKSN-------PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHc-------CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 4455555 89999976433 234467788999975
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.79 E-value=8.1 Score=35.50 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=36.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIP 46 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 46 (456)
..++++-.|+.|=..=+.+||.+|.++|+.|+|++.+++...+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 36788888888888889999999998899999999986554433
No 240
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=60.55 E-value=38 Score=32.33 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=52.1
Q ss_pred CccCHHHHHHHHHHHHhCCCEE--EEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 046077 12 WQGHLQPCIELCKNFSSRNYHT--TLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 12 ~~GHl~P~l~LA~~L~~~Gh~V--t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 89 (456)
-.|-+=|.+.|.+.|.. +.+| |+++.+.+. .+..+.....+.+++++.
T Consensus 30 ~~g~vGp~~~l~~~l~~-~~eIv~TiiCGDnyf----------------------------~en~eea~~~i~~mv~~~- 79 (349)
T PF07355_consen 30 REGPVGPGLMLEKALKD-DAEIVATIICGDNYF----------------------------NENKEEALKKILEMVKKL- 79 (349)
T ss_pred ccCCCChHHHHHHHhcC-CCEEEEEEEECcchh----------------------------hhCHHHHHHHHHHHHHhc-
Confidence 45777889999998876 3443 566666332 233444666777788877
Q ss_pred CCCCCCCCcEEEecCCccc----------HHHHHHHcCCCeEEE
Q 046077 90 ENPDFPAPLCAIVDFQVGW----------TKAIFWKFNIPVVSL 123 (456)
Q Consensus 90 ~~~~~~~pD~vI~D~~~~~----------~~~~A~~lgIP~v~~ 123 (456)
+||++|+.+.+.. +..+.+.++||.++-
T Consensus 80 ------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 ------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred ------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999998865422 224667899999974
No 241
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=60.28 E-value=44 Score=33.75 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=31.3
Q ss_pred ceEEEEcCCCccCHHHH------------HHHHHHHHhCCCEEEEEcCCC
Q 046077 3 REIFVVTGYWQGHLQPC------------IELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~------------l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+||++...|+.=.+.|. .+||+++..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 47787777777777664 689999999999999999774
No 242
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=59.78 E-value=1.2e+02 Score=26.37 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=36.5
Q ss_pred ceEEEEc---CC-CccCHHHHH-HHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC
Q 046077 3 REIFVVT---GY-WQGHLQPCI-ELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS 63 (456)
Q Consensus 3 ~~il~~~---~~-~~GHl~P~l-~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 63 (456)
+||.++- .| .+|=+--++ .|+..|.++||+||+.+.....+.-+. ...+++...++.+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~---~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF---EYNGVRLVYIPAP 64 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc---ccCCeEEEEeCCC
Confidence 4555553 23 366666655 478888889999999987654432222 1236777777644
No 243
>PRK00784 cobyric acid synthase; Provisional
Probab=59.60 E-value=1.1e+02 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCceEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 1 MEREIFVVTG-YWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 1 m~~~il~~~~-~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
|++.|++... ..-|=..=...|++.|+++|++|..+=+
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 7677777744 4579999999999999999999987644
No 244
>PLN02929 NADH kinase
Probab=59.50 E-value=16 Score=34.27 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred cCcceEEecCCchhHHHHHH---hCCCeeccCCcc------chhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHH
Q 046077 345 ISTGGFLSHCGWNSTMEAIV---HGVPFLAWPIRG------DQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERL 415 (456)
Q Consensus 345 ~~~~~~I~hgG~gt~~e~l~---~GvP~v~~P~~~------dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~ 415 (456)
..++++|+-||=||+..+.+ .++|++.+=... .+..|.-... . -.|... ..+.+++.++|+++
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL~------~~~~~~~~~~L~~i 134 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDAR-R-STGHLC------AATAEDFEQVLDDV 134 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccc-c-Cccccc------cCCHHHHHHHHHHH
Confidence 34569999999999998855 368988874431 1222221111 1 255443 46789999999999
Q ss_pred hCC
Q 046077 416 MSD 418 (456)
Q Consensus 416 l~~ 418 (456)
+++
T Consensus 135 l~g 137 (301)
T PLN02929 135 LFG 137 (301)
T ss_pred HcC
Confidence 975
No 245
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=59.01 E-value=26 Score=30.91 Aligned_cols=65 Identities=23% Similarity=0.170 Sum_probs=39.3
Q ss_pred ceEEEEcCCCccC--HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGH--LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GH--l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|||++.-++-+|+ .||.-.+++.|.++. +... .+....+| ...+.....
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~--------------~~~~-----~v~~~~lP----------V~~~~~~~~ 51 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGEL--------------IGGA-----EVHTRELP----------VSYEKAFEA 51 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSE--------------ETTE-----EEEEEEE-----------SSHHHHHHH
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCc--------------CCCc-----eEEEEEec----------CchHhHHHH
Confidence 6888888876665 799999999998620 0011 24444443 224556677
Q ss_pred HHHHHhhhcCCCCCCCCcEEEec
Q 046077 81 LEANLASRSENPDFPAPLCAIVD 103 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D 103 (456)
+.+++++. +||+||.=
T Consensus 52 l~~~l~~~-------~PdlVIhl 67 (202)
T PF01470_consen 52 LEELLEEH-------QPDLVIHL 67 (202)
T ss_dssp HHHHHHHH---------SEEEEE
T ss_pred HHHHHHhc-------CCcEEEEE
Confidence 88888888 99999853
No 246
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=58.50 E-value=20 Score=32.45 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCCceEEEecCCCCCCC---HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCC---CCeEEecccC---HHHh
Q 046077 271 PRGSVLYVAFGSEVGPT---REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSN---RGLIIHAWAP---QALI 341 (456)
Q Consensus 271 ~~~~vv~v~~GS~~~~~---~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~vp---~~~~ 341 (456)
.+++.|.|..|+..... .+.+.++++.|.+.+.++++..++... ..+........ ..+.+.+-.+ ...+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ--EKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH--HHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH--HHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 34567778787766433 678888999998888565544433210 00011111111 1344444333 2346
Q ss_pred hcccCcceEEecCCchhHHHHHHhCCCeecc
Q 046077 342 LNHISTGGFLSHCGWNSTMEAIVHGVPFLAW 372 (456)
Q Consensus 342 l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~ 372 (456)
++ .++++|+.- .|.+.=|.+.|+|+|.+
T Consensus 181 i~--~a~~~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 IS--RADLVIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HH--TSSEEEEES-SHHHHHHHHTT--EEEE
T ss_pred Hh--cCCEEEecC-ChHHHHHHHHhCCEEEE
Confidence 64 444899874 56777788899999998
No 247
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=58.10 E-value=10 Score=32.53 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=42.3
Q ss_pred cccCcceEEecCCchhHHHHHHhCCCeeccCCcc-----------------------chhhHHHHHHHHhccEEEEecCC
Q 046077 343 NHISTGGFLSHCGWNSTMEAIVHGVPFLAWPIRG-----------------------DQYFNAKLVVNYIKVGLRVTDDL 399 (456)
Q Consensus 343 ~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~P~~~-----------------------dQ~~na~~~~~~~G~g~~~~~~~ 399 (456)
.+..++++|++||...+..... ++|+|-++..+ +...++..+++.+|+-+..-.
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 5688899999999988888876 99999998632 223335555555555554421
Q ss_pred CCcccHHHHHHHHHHHhC
Q 046077 400 SETVKKGDIAEGIERLMS 417 (456)
Q Consensus 400 ~~~~~~~~l~~~i~~~l~ 417 (456)
--+.+++...|.++..
T Consensus 108 --~~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKA 123 (176)
T ss_dssp --ESSHHHHHHHHHHHHH
T ss_pred --ECCHHHHHHHHHHHHH
Confidence 2356777777777654
No 248
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.99 E-value=28 Score=33.46 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=27.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNY-HTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh-~Vt~~~~~ 39 (456)
+.||+++-.++.| -.+|+.|++.|+ +++++-.+
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999888 578999999998 77777554
No 249
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.75 E-value=16 Score=34.24 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=37.6
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+-||-||+..+.+. ++|++.+-.. .+|... ..+.+++.+++.+++++
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT------DITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC------cCCHHHHHHHHHHHHcC
Confidence 46799999999999988663 7788877211 133322 45678888888888764
No 250
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=57.39 E-value=31 Score=29.07 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=54.2
Q ss_pred HHHHHHHHHhC-CCEEEEEcCCC---CcCC----CCCCCCCCCCe-EEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 046077 19 CIELCKNFSSR-NYHTTLIIPSI---LVSA----IPPSFTQYPRT-RTTQITSSGRPMPPSDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 19 ~l~LA~~L~~~-Gh~Vt~~~~~~---~~~~----~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 89 (456)
++..|++|++. |.+|+.++... ..+. +... +. +.+.++.+... ..........+.+++++.
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~-----G~d~v~~~~~~~~~----~~~~~~~a~~l~~~~~~~- 89 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY-----GADKVYHIDDPALA----EYDPEAYADALAELIKEE- 89 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST-----TESEEEEEE-GGGT----TC-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc-----CCcEEEEecCcccc----ccCHHHHHHHHHHHHHhc-
Confidence 57889999875 88888776442 2111 1111 32 34444433222 123445677788888887
Q ss_pred CCCCCCCCcEEEecCCc---ccHHHHHHHcCCCeEEEec
Q 046077 90 ENPDFPAPLCAIVDFQV---GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 90 ~~~~~~~pD~vI~D~~~---~~~~~~A~~lgIP~v~~~~ 125 (456)
+||+|+..... -.+..+|..+|.|++.-.+
T Consensus 90 ------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 90 ------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp ------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred ------CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 99999865432 3567899999999998643
No 251
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.31 E-value=24 Score=33.20 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=39.4
Q ss_pred CcceEEecCCchhHHHHHH----hCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIV----HGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~----~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||=||+..+.+ .++|++.+-.. .+|... ..+.+++.++|++++++
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT------QIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee------ccCHHHHHHHHHHHHcC
Confidence 4679999999999999875 37898888321 245443 36778888888888865
No 252
>PRK06849 hypothetical protein; Provisional
Probab=57.12 E-value=36 Score=33.42 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+++|+++... ..-.+.+|+.|.++||+|.++....
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4567766422 2358999999999999999987664
No 253
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.09 E-value=17 Score=34.42 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCH
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
.++++|+=||=||+..+.+. ++|++.+-.. .+|... ..+.+++.++|.+++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt------~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT------EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHcCC
Confidence 56799999999999999775 7898888221 133222 356788888888888653
No 254
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.02 E-value=11 Score=32.53 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIP 46 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 46 (456)
+||++.-.++-|=.. ...+.+.|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 567777778777655 8999999999999999999887665554
No 255
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=1.5e+02 Score=28.55 Aligned_cols=119 Identities=13% Similarity=-0.035 Sum_probs=71.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC-CCCCCeEEEecCCCCCCC-CC-CchHHHHHH
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF-TQYPRTRTTQITSSGRPM-PP-SDPLSQQAA 78 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~-~~~~~~~~~ 78 (456)
++|+.++..|-.||-=.+=-=|..|++.|++|.+++.-. .++... ...|+|+++.++....-. .. ......+..
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~---s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf 88 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVE---SIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVF 88 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecC---CCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHH
Confidence 358889999999997667777999999999999998653 222211 224689999998776431 11 111222222
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEec-CCcccHHHHHHHc----CCCeEEEech
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVD-FQVGWTKAIFWKF----NIPVVSLFTF 126 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D-~~~~~~~~~A~~l----gIP~v~~~~~ 126 (456)
-++-.++-.+... +++|.++.- +-+.+...++..+ |...++=|-.
T Consensus 89 ~Qfl~Ll~aL~~~---~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHN 138 (444)
T KOG2941|consen 89 WQFLSLLWALFVL---RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHN 138 (444)
T ss_pred HHHHHHHHHHHhc---cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehh
Confidence 2333333322111 178888644 4555666665544 6666665443
No 256
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.52 E-value=16 Score=31.94 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=33.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS 43 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~ 43 (456)
+++|++--.|+.|=+.-...|+++|.++||+|.++.++...+
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 357887777766654447999999999999999999886544
No 257
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=56.50 E-value=1.1e+02 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCceEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 1 MEREIFVVTGY-WQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 1 m~~~il~~~~~-~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
|+++|++.-.- .-|=..-.-.|++.|.++|++|.+.=
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 55666555444 56888888899999999999998863
No 258
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=56.05 E-value=26 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCccCHHHHH---HHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCI---ELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l---~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+|++++++....|-.+.++ .|.+.-.++||++.+=+-.
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 77899999999999888887 4555556789999986533
No 259
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.74 E-value=1.2e+02 Score=25.96 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=54.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---cCC-CCcC--CCCCCCCCCCCeEEEecCCCCCCCC-CCchHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLI---IPS-ILVS--AIPPSFTQYPRTRTTQITSSGRPMP-PSDPLSQQ 76 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~---~~~-~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~ 76 (456)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++ =.. ..-+ .+++ . ++.+.....+..-.. ........
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~----~-~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP----H-GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh----c-CcEEEECCCCCeecCCCcHHHHHH
Confidence 577888899999999999999999999999765 221 0000 1111 1 566666655432111 11122222
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 77 AAKDLEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
....+....+.+... +.|+||-|-..
T Consensus 82 ~~~~~~~a~~~l~~~----~~DlvVLDEi~ 107 (173)
T TIGR00708 82 AKAAWQHAKEMLADP----ELDLVLLDELT 107 (173)
T ss_pred HHHHHHHHHHHHhcC----CCCEEEehhhH
Confidence 333333333333322 89999999653
No 260
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.48 E-value=24 Score=33.32 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=39.9
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||=||+..+.+. ++|++.+... .+|... ....+++.+++++++++
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHHHcC
Confidence 46799999999999998764 7898888431 245443 35678888888888865
No 261
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=55.16 E-value=19 Score=34.87 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=55.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCC--CcCcc-hhhhhhC-CCCeE--------------Eecc
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSE--EYMPH-DLDNRVS-NRGLI--------------IHAW 335 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~-~~~v~--------------~~~~ 335 (456)
.+++.+.||-+...+. ..+++.|++.++++.|+.....- +.+|. ++.-..- ..++. +..+
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 4777778877654332 23667777788899888754432 11222 1211100 00110 0001
Q ss_pred cCHHHhhcccCcceEEecCCchh---HHHHHHhCCCeeccC
Q 046077 336 APQALILNHISTGGFLSHCGWNS---TMEAIVHGVPFLAWP 373 (456)
Q Consensus 336 vp~~~~l~h~~~~~~I~hgG~gt---~~e~l~~GvP~v~~P 373 (456)
.--..+++.-+-+++|++||.-+ +..+...|+|+++.=
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 11113455555559999999986 889999999998863
No 262
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.88 E-value=11 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=27.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+|.++-.+..|+ ++|..|+.+||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 477788787876 89999999999999999874
No 263
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.32 E-value=30 Score=29.36 Aligned_cols=43 Identities=26% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHH--H--HHHH-c-CCCeEEEec
Q 046077 76 QAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTK--A--IFWK-F-NIPVVSLFT 125 (456)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~--~--~A~~-l-gIP~v~~~~ 125 (456)
...+.+.+++++. +||+||+...+.... . -.+. + ++|.+...|
T Consensus 76 ~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3455677777777 999999986543322 1 1222 3 588877644
No 264
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=53.95 E-value=86 Score=26.51 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCc---ccHHHHHHHcCCCeEEEec
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQV---GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~---~~~~~~A~~lgIP~v~~~~ 125 (456)
.......+.+++++. +||+|+..... -.+..+|..+|.|++.-.+
T Consensus 68 ~~~~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 68 AEPYAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred hHHHHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 344566677777766 89999855322 5678899999999998644
No 265
>PRK06988 putative formyltransferase; Provisional
Probab=53.73 E-value=17 Score=34.59 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+|+|+|+..+..| +...+.|.++||+|..+.+.
T Consensus 1 ~~mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 1 MKPRAVVFAYHNVG-----VRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CCcEEEEEeCcHHH-----HHHHHHHHhCCCCEEEEEcC
Confidence 77899999766543 44556777789998877654
No 266
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.71 E-value=46 Score=33.35 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=23.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
++++++-. |. .- +++|+.|+++|++|++....
T Consensus 6 k~v~iiG~---g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGA---GV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECC---CH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 46666643 33 23 59999999999999998654
No 267
>PRK06179 short chain dehydrogenase; Provisional
Probab=53.33 E-value=72 Score=29.14 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=24.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
.+.++++ ++.|-+ -.++|++|+++|++|+..+..
T Consensus 4 ~~~vlVt-Gasg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 4 SKVALVT-GASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCEEEEe-cCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4555565 455655 568999999999999987754
No 268
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.06 E-value=23 Score=33.22 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=38.9
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||=||+..+.+. ++|++.+-.. .+|... ..+++++.+++++++++
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA------TVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc------ccCHHHHHHHHHHHHcC
Confidence 45799999999999998873 7888888321 134322 45678888888888865
No 269
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=52.96 E-value=1.1e+02 Score=30.81 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=30.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
.++|+++-.+-.| ++.|+.|.++|++|++.-..+.
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 4689999999988 8999999999999999865543
No 270
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=52.74 E-value=52 Score=33.04 Aligned_cols=100 Identities=7% Similarity=-0.040 Sum_probs=55.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|.+||||+-.+-. .+.+++.+.+.|++|..+.+.......... ... .+..+...... ... .-...
T Consensus 1 ~~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~---~ad-~~~~~~~~~~~-----~~y-~d~~~ 65 (451)
T PRK08591 1 MFDKILIANRGEI-----ALRIIRACKELGIKTVAVHSTADRDALHVQ---LAD-EAVCIGPAPSK-----KSY-LNIPA 65 (451)
T ss_pred CcceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChhhccCCCHh---HCC-EEEEeCCCCcc-----ccc-CCHHH
Confidence 7789999954433 588889999999999988665322110000 001 22222111000 000 01234
Q ss_pred HHHHHhhhcCCCCCCCCcEEEec--CCccc--HHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVD--FQVGW--TKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D--~~~~~--~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|+|+.- +.+.. ...+++.+|+|++.
T Consensus 66 l~~~a~~~-------~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g 104 (451)
T PRK08591 66 IISAAEIT-------GADAIHPGYGFLSENADFAEICEDSGFTFIG 104 (451)
T ss_pred HHHHHHHh-------CCCEEEECCCccccCHHHHHHHHHCCCceEC
Confidence 55555555 89999853 33322 35588999999885
No 271
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.27 E-value=25 Score=29.35 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCc----------ccHHHHHHHcCCCeEEEec
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQV----------GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~----------~~~~~~A~~lgIP~v~~~~ 125 (456)
.+...-.+++|+.++...+=+..||+|++.--+ --+..+|+++|||+.-.+.
T Consensus 102 ~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 102 SEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred chHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 334556688899888766556699999965221 2456789999999986543
No 272
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=51.94 E-value=26 Score=35.31 Aligned_cols=53 Identities=8% Similarity=0.156 Sum_probs=40.0
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhc-cEEEEecCCCCcccHHHHHHHHHHHhCCH
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIK-VGLRVTDDLSETVKKGDIAEGIERLMSDE 419 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 419 (456)
.++++|+=||=||++.+.+. ++|++.+ .+| +|... .++.+++.++|.++++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGI---------------N~G~LGFLt------~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPF---------------SMGSLGFMT------PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEE---------------eCCCcceec------ccCHHHHHHHHHHHHcCC
Confidence 56799999999999999774 5677766 223 55433 467889999999998753
No 273
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=51.93 E-value=52 Score=31.41 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFP 95 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 95 (456)
..-+.+|++.|.++|++|.+.+++.-.+..+......+. ....+ .-......+..+++
T Consensus 193 ~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~-~~~~l------------~g~~sL~el~ali~--------- 250 (334)
T TIGR02195 193 HEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPG-ELRNL------------AGETSLDEAVDLIA--------- 250 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCc-ccccC------------CCCCCHHHHHHHHH---------
Confidence 446889999999889999998876433222211000000 00000 00112345555666
Q ss_pred CCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 96 APLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 96 ~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|++|+.- .+...+|..+|+|.+.++.
T Consensus 251 ~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 251 LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 669999553 3778999999999998744
No 274
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.87 E-value=37 Score=33.70 Aligned_cols=92 Identities=9% Similarity=0.031 Sum_probs=51.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCC-CCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSA-IPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
++++++..+.. .+.+++.|.+-|-+|..+........ .+......+ .. .......-...+
T Consensus 288 krv~i~~~~~~-----~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~--------~~------~~v~~~~~~~e~ 348 (410)
T cd01968 288 KKAALYTGGVK-----SWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLG--------EG------TVIVDDANPREL 348 (410)
T ss_pred CEEEEEcCCch-----HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhC--------CC------cEEEeCCCHHHH
Confidence 46666543332 37788888889999988865432210 000000000 00 000001122345
Q ss_pred HHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 82 EANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
.+.+++. +||++|++. ....+|+++|||++..
T Consensus 349 ~~~i~~~-------~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 349 KKLLKEK-------KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHhhc-------CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 5667766 999999983 4468899999999853
No 275
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=51.52 E-value=1.2e+02 Score=30.06 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=78.3
Q ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcC-cchhhhhhCCCCeEEecc-------cCHHHhhcc
Q 046077 273 GSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYM-PHDLDNRVSNRGLIIHAW-------APQALILNH 344 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~-------vp~~~~l~h 344 (456)
+.+++.-.||.... ....+++.|.+.+..+-+++.......+ |..++...+. .++..-| +.|..+...
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~-~V~~~~~~~~~~~~~~hi~l~~~ 82 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGN-PVSTDLWDPAAEAAMGHIELAKW 82 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhCC-ceEccccccccCCCcchhhcccc
Confidence 44777777776532 4445777777778777666655432222 2222222221 2322212 235554443
Q ss_pred cCcceEEecCCchhHHH-------------HHHhCCCeeccCCcc-------chhhHHHHHHHHhccEEEEec-------
Q 046077 345 ISTGGFLSHCGWNSTME-------------AIVHGVPFLAWPIRG-------DQYFNAKLVVNYIKVGLRVTD------- 397 (456)
Q Consensus 345 ~~~~~~I~hgG~gt~~e-------------~l~~GvP~v~~P~~~-------dQ~~na~~~~~~~G~g~~~~~------- 397 (456)
++ ..+|.-|=+||+.. ++.+++|++++|.-. =-..|..++. ..|+-+.-+.
T Consensus 83 aD-~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~ii~P~~g~la~~ 160 (399)
T PRK05579 83 AD-LVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLR-SRGVEIIGPASGRLACG 160 (399)
T ss_pred cC-EEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHH-HCCCEEECCCCccccCC
Confidence 44 37778888887663 467799999999422 1345667777 3476654321
Q ss_pred --CCCCcccHHHHHHHHHHHhC
Q 046077 398 --DLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 398 --~~~~~~~~~~l~~~i~~~l~ 417 (456)
+.-+-.+.++|...+.+.+.
T Consensus 161 ~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 161 DVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CcCCCCCCCHHHHHHHHHHHhh
Confidence 11134577888888877774
No 276
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=51.48 E-value=36 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=30.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
+-++++.-+...|...+-.+|+.|.++|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45788888999999999999999999999998753
No 277
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.42 E-value=42 Score=32.56 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAI 45 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 45 (456)
|+|+-.=+-|-..-+-.||..+.++|+++.+++.+.|+.-.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 45555557888899999999999999999999999876543
No 278
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=51.10 E-value=34 Score=34.53 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=53.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC----CCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS----AIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
++++++.-+ .-.+.+++.|.+-|-+|..+.+..... .+... ...+.-+ ....-.
T Consensus 327 krv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~--~~~~~~v---------------~~~~d~ 384 (456)
T TIGR01283 327 KKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIREL--MGEGTVM---------------LDDANP 384 (456)
T ss_pred CEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH--cCCCeEE---------------EeCCCH
Confidence 456555433 344688888999999998886543211 11110 0001100 000123
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+.+++++. +||++|+. .....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 4566677776 99999987 34577888999999875
No 279
>PRK10867 signal recognition particle protein; Provisional
Probab=50.89 E-value=79 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEcCCCCcCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSR-NYHTTLIIPSILVSA 44 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~~~~~~~ 44 (456)
|+++..++.|=..=...||..|+++ |++|.+++.+.++..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 5667777999999999999999998 999999998876654
No 280
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.81 E-value=71 Score=31.92 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++++++. +||++|++.. ...+|+++|||++..
T Consensus 362 ~e~~~~l~~~-------~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL-------KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc-------CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 4567777776 9999999964 578999999999875
No 281
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=50.67 E-value=1.5e+02 Score=29.63 Aligned_cols=100 Identities=6% Similarity=-0.059 Sum_probs=55.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|-+||+++-.+-. .+.+++.+.+.|++|..+.+.......... . .-.+..++.+.... .. .-.+.
T Consensus 1 ~~~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~---~-ad~~~~~~~~~~~~----~~--~d~~~ 65 (450)
T PRK06111 1 MFQKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSEADRDALHVK---M-ADEAYLIGGPRVQE----SY--LNLEK 65 (450)
T ss_pred CcceEEEECCcHH-----HHHHHHHHHHcCCeEEEEechhhccCcchh---h-CCEEEEcCCCCccc----cc--cCHHH
Confidence 7889999886544 377888888899999998755322111100 0 01222222111100 00 01234
Q ss_pred HHHHHhhhcCCCCCCCCcEEEec--CCcc--cHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVD--FQVG--WTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D--~~~~--~~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|+|+.. +... .....++.+|+|++.
T Consensus 66 l~~~~~~~-------~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g 104 (450)
T PRK06111 66 IIEIAKKT-------GAEAIHPGYGLLSENASFAERCKEEGIVFIG 104 (450)
T ss_pred HHHHHHHh-------CCCEEEeCCCccccCHHHHHHHHHCCCeEEC
Confidence 55566665 89999853 3222 244577889998764
No 282
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=50.65 E-value=34 Score=28.75 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.7
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEE
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESPGPFIWVV 309 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (456)
.||+++||......+.+...+.+|.+.+.--++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999998888888889999988865334333
No 283
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=50.56 E-value=51 Score=33.46 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=52.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC----CCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS----AIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
++++++.-+ .-.++|++.|.+.|-+|..+....... .+... ..+...+.. ....
T Consensus 325 k~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~--~~~~~~v~~---------------d~~~ 382 (475)
T PRK14478 325 KRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKEL--MGPDAHMID---------------DANP 382 (475)
T ss_pred CEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHH--cCCCcEEEe---------------CCCH
Confidence 466665433 345688888999999998887653321 11110 000110000 0112
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVS 122 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 122 (456)
..+.+++++. +||++|++ .....+|+++|||++-
T Consensus 383 ~e~~~~i~~~-------~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEA-------KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhc-------CCCEEEec---CchhhhhhhcCCCEEE
Confidence 3445556665 99999997 4667899999999984
No 284
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.28 E-value=36 Score=25.80 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCcEEE--ecCCc----ccHHHHHHHcCCCeEEEechhHHHH
Q 046077 96 APLCAI--VDFQV----GWTKAIFWKFNIPVVSLFTFGACAA 131 (456)
Q Consensus 96 ~pD~vI--~D~~~----~~~~~~A~~lgIP~v~~~~~~~~~~ 131 (456)
++|+|| +|+.. +-+...|+..+||++.....+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 678886 77653 4556789999999999875665544
No 285
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=50.26 E-value=61 Score=28.72 Aligned_cols=63 Identities=3% Similarity=-0.058 Sum_probs=42.7
Q ss_pred eEEEEcCCCccC--HHHHHHHHHHHHhC---CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 4 EIFVVTGYWQGH--LQPCIELCKNFSSR---NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 4 ~il~~~~~~~GH--l~P~l~LA~~L~~~---Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
+|++.-+.-+|. .||.-.++++|.+. |++| ....+| .......
T Consensus 2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~~~~~v----------------------~~~~LP----------v~~~~~~ 49 (209)
T PRK13193 2 TVLLFGFEPFLEYKENPSQLIVEALNGSTILKEEV----------------------KGVILP----------VEYEKIE 49 (209)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHHhhccccCCceE----------------------EEEEeC----------CcHHHHH
Confidence 488887776654 89999999999762 2322 222222 2244466
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCC
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQ 105 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~ 105 (456)
..+.+++++. +||+||.=..
T Consensus 50 ~~l~~~~~~~-------~Pd~vl~~G~ 69 (209)
T PRK13193 50 DLIVTKIREM-------KPILTLGIGV 69 (209)
T ss_pred HHHHHHHHHH-------CCCEEEEecc
Confidence 7788888888 9999996544
No 286
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.22 E-value=28 Score=27.82 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=31.7
Q ss_pred CceEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCC
Q 046077 2 EREIFVVTGY-WQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAI 45 (456)
Q Consensus 2 ~~~il~~~~~-~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 45 (456)
.+-++++-.| ..=.+.-.+-+..+|.++|++||+++++..+..+
T Consensus 3 gkvlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 3 GKVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred ceEEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 3344555556 4455666788899999999999999988655443
No 287
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=50.17 E-value=29 Score=29.38 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.1
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|+|-| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34888888866 5669999999999994
No 288
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=49.86 E-value=33 Score=34.13 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=50.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCCCc-CCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHH
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSILV-SAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAK 79 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (456)
.++|+++.-+. -.+.|++.|. +-|-+|..+++.... +...+.....+...+.. . .....
T Consensus 288 Gk~vai~~~~~-----~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v-~-------------d~~~~ 348 (415)
T cd01977 288 GKKVCIWTGGP-----KLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYI-D-------------DPNEL 348 (415)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHhcCCceEEE-e-------------CCCHH
Confidence 35677654332 2588999997 789999887653211 11000000000000000 0 00112
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
.+.+.+++. +||+||+...- ..+|+++|||++..
T Consensus 349 e~~~~~~~~-------~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEML-------KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHhc-------CCCEEEecCcc---chhhhhcCCCEEec
Confidence 233455666 99999988543 36999999999875
No 289
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=49.82 E-value=1.2e+02 Score=31.84 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=22.7
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345899998866 5668999999999994
No 290
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=49.78 E-value=52 Score=29.23 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=45.4
Q ss_pred ceEEEEcCCCccC--HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGH--LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GH--l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+||+.-+.-+|. .||.-.++++|.... +... .+....+|- .+....+.
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~~~-----~v~~~~LPV----------~~~~~~~~ 52 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNGEQ--------------AGAL-----RVHSALLPV----------EPRAAMAA 52 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhccccc--------------CCCc-----EEEEEEeCC----------ChhHHHHH
Confidence 6788887776654 899999999996641 0011 244444442 23445668
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
+.+++++. +||+||+=...
T Consensus 53 l~~~~~~~-------~Pd~vi~~G~a 71 (211)
T PRK13196 53 LSRLLDEL-------QPSAVLLTGLA 71 (211)
T ss_pred HHHHHHHh-------CCCEEEEeccc
Confidence 88888888 99999976443
No 291
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=49.74 E-value=75 Score=28.22 Aligned_cols=105 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhC----------------CCEEEEEcCCC-----CcCCCCCCCCCCCCeEEEecCCCCCC
Q 046077 8 VTGYWQGHLQPCIELCKNFSSR----------------NYHTTLIIPSI-----LVSAIPPSFTQYPRTRTTQITSSGRP 66 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L~~~----------------Gh~Vt~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~ 66 (456)
+-...+++ |.++.+++.... |-+++++|+.+ ..+.+.+.+....-.+....+.+...
T Consensus 73 iiIaCf~D--Pgl~~~Re~~~~PviGi~eAsv~~A~~vgrrfsViTtt~rs~~il~~lv~~~g~s~~~~~vrstdl~vL~ 150 (230)
T COG4126 73 IIIACFSD--PGLAAARERAAIPVIGICEASVLAALFVGRRFSVITTTERSRPILEELVRSYGLSRHCRSVRSTDLPVLA 150 (230)
T ss_pred EEEEecCC--hHHHHHHHHhCCCceehhHHHHHHHHHhcceEEEEecCcccHHHHHHHHHhcCccccccceeeCCCCccc
Q ss_pred CCC-CchHHHHHHHHHHHHHhhhcCCCCCCCCcEEE--ecCCcccHHHHHHHcCCCeE
Q 046077 67 MPP-SDPLSQQAAKDLEANLASRSENPDFPAPLCAI--VDFQVGWTKAIFWKFNIPVV 121 (456)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI--~D~~~~~~~~~A~~lgIP~v 121 (456)
... .......+....+..+++. +.|+|+ |-.++.-+-.+.+.+|||++
T Consensus 151 l~~~~~~~~~~l~~~~~~a~~ed-------gAeaIiLGCAGms~la~~Lq~~~gvPVI 201 (230)
T COG4126 151 LEGPPEEAEALLVIEAAEALKED-------GAEAIILGCAGMSDLADQLQKAFGVPVI 201 (230)
T ss_pred ccCChHHHHHHHHHHHHHHhhhc-------CCCEEEEcCccHHHHHHHHHHHhCCCcc
No 292
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=49.66 E-value=1.8e+02 Score=26.90 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=61.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+-|++.-.|+-|=-.-.-.|++.|.+.|.+|.++...... +... ........+..+..++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~------------------~y~~~~~Ek~~R~~l~ 61 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN------------------DYADSKKEKEARGSLK 61 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS------------------SS--GGGHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh------------------hhhchhhhHHHHHHHH
Confidence 4688899999999999999999999999999998855332 2221 0001233444555555
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcc------cHHHHHHHcCCCeEEEechhHHHHHHHH
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVG------WTKAIFWKFNIPVVSLFTFGACAAAMEW 135 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~------~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 135 (456)
..+++... +-++||.|...+ -..-+|+..+.++..++.......+...
T Consensus 62 s~v~r~ls-----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 62 SAVERALS-----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp HHHHHHHT-----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred HHHHHhhc-----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 55555422 448999996442 2346999999999977665554444433
No 293
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=49.59 E-value=71 Score=30.30 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=26.8
Q ss_pred hhcccCcceEEecCCchhHHHHHHhCCCeecc
Q 046077 341 ILNHISTGGFLSHCGWNSTMEAIVHGVPFLAW 372 (456)
Q Consensus 341 ~l~h~~~~~~I~hgG~gt~~e~l~~GvP~v~~ 372 (456)
+++.-..|++|+.++..+...|-..|+|.+.+
T Consensus 88 ~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 88 IIREYNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred HHHhcCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 44444556999999999999999999999966
No 294
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.17 E-value=19 Score=33.38 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=36.5
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.++++|+=||=||+..+.+. ++|++.+-.. .+|... ..+++++.+.+.++++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHh
Confidence 45699999999999987653 6788887321 144433 3566777777777776
No 295
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=48.87 E-value=59 Score=28.81 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=42.7
Q ss_pred ceEEEEcCCCccC--HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGH--LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GH--l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+|++.-+.-+|. .||.-.+++.|.+.. +... .+....+| ..+......
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~~~-----~v~~~~LP----------V~~~~~~~~ 51 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKK--------------IGDA-----KVFGRVLP----------VSFKRAREE 51 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccccc--------------cCCc-----EEEEEEeC----------CchHhHHHH
Confidence 3588887776654 899999999996631 0011 23333343 223445667
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCC
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQ 105 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~ 105 (456)
+.+++++. +||+||.=..
T Consensus 52 l~~~l~~~-------~Pd~vlhlG~ 69 (208)
T PRK13194 52 LEKVLDEI-------KPDITINLGL 69 (208)
T ss_pred HHHHHHHh-------CCCEEEEeec
Confidence 78888877 8999986544
No 296
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.84 E-value=41 Score=34.60 Aligned_cols=102 Identities=8% Similarity=-0.034 Sum_probs=61.3
Q ss_pred ccCHHHHHHHH-HHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCC------------------CCCC---
Q 046077 13 QGHLQPCIELC-KNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRP------------------MPPS--- 70 (456)
Q Consensus 13 ~GHl~P~l~LA-~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~--- 70 (456)
.|++.=.+.+| +.+...|++|.+.-.... +.+.+.. .+..+.++....+ ++..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~ta-~~i~~~~----~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~ 110 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGSNG-AYLKSRL----SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPP 110 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECchHH-HHHHHhC----CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccH
Confidence 47888888888 446677999888755432 2222221 2344444444322 0100
Q ss_pred -chH------------HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEech
Q 046077 71 -DPL------------SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 71 -~~~------------~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 126 (456)
... .-......+..++++.+. +.++||+|. .+...|+.+|++.+.+.+.
T Consensus 111 ~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~----G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 111 ALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR----GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC----CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 000 111234566666666554 899999996 4579999999999988664
No 297
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=48.70 E-value=24 Score=30.63 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=33.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
+||++--.|+.|=+.-.+.+.++|.+.|++|+++.++...
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 4677777788888777789999999999999999887543
No 298
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=48.57 E-value=88 Score=26.49 Aligned_cols=86 Identities=16% Similarity=0.033 Sum_probs=51.2
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 046077 10 GYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 10 ~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 89 (456)
.|+.|++= -.|+++|.++||+|+.++-.... .+. .++++....+... . ..+.+.++
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~--~~~----~~~~~~~~~d~~d-------~------~~~~~al~--- 59 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPSK--AED----SPGVEIIQGDLFD-------P------DSVKAALK--- 59 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGGG--HHH----CTTEEEEESCTTC-------H------HHHHHHHT---
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCchh--ccc----ccccccceeeehh-------h------hhhhhhhh---
Confidence 35666653 45899999999999999866431 111 2267766643211 1 33444444
Q ss_pred CCCCCCCCcEEEecCC--------cccHHHHHHHcCCCeEEEec
Q 046077 90 ENPDFPAPLCAIVDFQ--------VGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 90 ~~~~~~~pD~vI~D~~--------~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|.||.-.- .--...+++..|++.+.+.+
T Consensus 60 ------~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 60 ------GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp ------TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ------hcchhhhhhhhhcccccccccccccccccccccceeee
Confidence 5688775532 12233556778999887633
No 299
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=48.44 E-value=1.8e+02 Score=31.12 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCceEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHH
Q 046077 1 MEREIFVVTGY-WQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAK 79 (456)
Q Consensus 1 m~~~il~~~~~-~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (456)
|.+.+++.+.. ..|=..=.+.|++.|.++|.+|.++=|-.. . ++....... ........... .
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~-~----------p~~~~~~~~-~~~~~~~~~~~----~ 64 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ-P----------PLTMSEVEA-LLASGQLDELL----E 64 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc-C----------CCCHHHHHH-HHhccCChHHH----H
Confidence 66677777544 578888899999999999999999743211 1 000000000 00000001112 2
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCcc---------cHHHHHHHcCCCeEEEechh
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQVG---------WTKAIFWKFNIPVVSLFTFG 127 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~---------~~~~~A~~lgIP~v~~~~~~ 127 (456)
.+.+.+.++.+ +.|+||.|...+ ....+|+.++.|++......
T Consensus 65 ~I~~~~~~l~~-----~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 65 EIVARYHALAK-----DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHHHHHHHhcc-----CCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 22222333221 789999774332 24678999999999876554
No 300
>PRK08322 acetolactate synthase; Reviewed
Probab=48.21 E-value=1.1e+02 Score=31.72 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=22.8
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 344888898865 6779999999999984
No 301
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=47.92 E-value=22 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPSILVSAIPP 47 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 47 (456)
+.|++.+.-.+.-+||++|++.|..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 57899999999999999999999988877665
No 302
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=47.83 E-value=56 Score=28.02 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCcCC-C-CCCCCCCCCe-EEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCC
Q 046077 18 PCIELCKNFSSRNYHTTLIIPSILVSA-I-PPSFTQYPRT-RTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDF 94 (456)
Q Consensus 18 P~l~LA~~L~~~Gh~Vt~~~~~~~~~~-~-~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 94 (456)
-++..|++|.+.|-+|+.++.....+. . ..... .+. +.+.+..+... ....+.....+.+++++.
T Consensus 23 e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~--~Gad~v~~~~~~~~~----~~~~~~~a~~l~~~i~~~------ 90 (181)
T cd01985 23 EAVEAALRLKEYGGEVTALVIGPPAAEVALREALA--MGADKVLLVEDPALA----GYDPEATAKALAALIKKE------ 90 (181)
T ss_pred HHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHH--hCCCEEEEEecCccc----CCChHHHHHHHHHHHHHh------
Confidence 567888888754446666654321111 1 11000 021 22333322211 122444566677777776
Q ss_pred CCCcEEEecCCc---ccHHHHHHHcCCCeEEEe
Q 046077 95 PAPLCAIVDFQV---GWTKAIFWKFNIPVVSLF 124 (456)
Q Consensus 95 ~~pD~vI~D~~~---~~~~~~A~~lgIP~v~~~ 124 (456)
+||+|+.-... ..+..+|..+|.|+++-.
T Consensus 91 -~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 91 -KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred -CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 89999855322 467889999999999853
No 303
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.46 E-value=15 Score=35.78 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSA 44 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~ 44 (456)
|++---|+-|--.=+|.++..|+++| +|.|++.++....
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Q 134 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQ 134 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHH
Confidence 45556678888889999999999999 9999999965443
No 304
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=47.43 E-value=1.7e+02 Score=26.95 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSS 63 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 63 (456)
|+++|+++.+|+...-. +++..|.+.|+++.++......+... ....+...-++.+
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~----~l~~~DgLvipGG 57 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK----SVSDYDCLVIPGG 57 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc----chhhCCEEEECCC
Confidence 47799999999887554 66788989999999887653211110 1124666666665
No 305
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.34 E-value=38 Score=30.09 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=50.5
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEcCCC----CcCCCCCCCC------CCCCeEEEecCCCCCCCCCCchHHHHHHHHH
Q 046077 12 WQGHLQPCIELCKNFSSRNYHTTLIIPSI----LVSAIPPSFT------QYPRTRTTQITSSGRPMPPSDPLSQQAAKDL 81 (456)
Q Consensus 12 ~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~----~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
+.|---=...++..+...||.|++++++. +...+++..- ....+.|.++..... .......+.....+
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~--~~~~~~~~~~L~~l 115 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV--NWGRRSARKLLDLL 115 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc--ccChHHHHHHHHHH
Confidence 44554445677888889999999999885 3333333210 112355555533321 11123333344444
Q ss_pred HHHHhhhcCCCCCCCCcEEEecCCcccH
Q 046077 82 EANLASRSENPDFPAPLCAIVDFQVGWT 109 (456)
Q Consensus 82 ~~ll~~~~~~~~~~~pD~vI~D~~~~~~ 109 (456)
-+.++.+ +-|++|.|.+...+
T Consensus 116 ~~~~k~~-------~~dViIIDSls~~~ 136 (235)
T COG2874 116 LEFIKRW-------EKDVIIIDSLSAFA 136 (235)
T ss_pred HhhHHhh-------cCCEEEEecccHHh
Confidence 4445545 78999999876433
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.97 E-value=91 Score=31.08 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=34.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
-|+++-.++.|=..-...||..|.++|++|.+++.+.++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 357777789999999999999999999999999988765
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=46.26 E-value=1.8e+02 Score=24.47 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
+++.-.|+.|=..-...+|..|.++|.+|.++..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777889999999999999999999999999877654
No 308
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=46.24 E-value=1.3e+02 Score=31.55 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.2
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44888888865 6779999999999983
No 309
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=46.03 E-value=1.3e+02 Score=29.78 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEE-cCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhh
Q 046077 9 TGYWQGHLQPCIELCKNFSSRNYHTTLI-IPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLAS 87 (456)
Q Consensus 9 ~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 87 (456)
|..+.|-..=.+.|.+.|++||++|.=+ +.|++ |... |++.-.+.+. .. ..........++.++.+
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY---IDP~--------~H~~atG~~s-rN-LD~~mm~~~~v~~~f~~ 74 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY---IDPG--------YHTAATGRPS-RN-LDSWMMGEEGVRALFAR 74 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc---cCch--------hhhHhhCCcc-CC-CchhhcCHHHHHHHHHH
Confidence 3347788999999999999999999754 34422 2221 1111111111 00 11111122455555555
Q ss_pred hcCCCCCCCCcEEE-------ecC-----CcccHHHHHHHcCCCeEEEechhHHHH
Q 046077 88 RSENPDFPAPLCAI-------VDF-----QVGWTKAIFWKFNIPVVSLFTFGACAA 131 (456)
Q Consensus 88 ~~~~~~~~~pD~vI-------~D~-----~~~~~~~~A~~lgIP~v~~~~~~~~~~ 131 (456)
..+ ..|+.| +|. -..++..+|+.+|+|+|........+.
T Consensus 75 ~~~-----~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~ 125 (451)
T COG1797 75 AAA-----DADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSR 125 (451)
T ss_pred hcC-----CCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhH
Confidence 533 444543 343 135788999999999998766554443
No 310
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.00 E-value=62 Score=29.18 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+.+.++++ ++.|.+ -..||+.|.++|++|.++...
T Consensus 2 ~~~~~vlIt-G~sg~i--G~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVT-GAASGI--GLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCCEEEEE-CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 343555555 444655 479999999999999887543
No 311
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=45.96 E-value=1.2e+02 Score=27.25 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=24.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+.++++ ++.|.+ -..+++.|.++|++|+.+....
T Consensus 9 k~vlIt-Gas~~i--G~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVT-GAAQGI--GYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEecch
Confidence 445555 445554 5678999999999999987653
No 312
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=45.80 E-value=99 Score=32.19 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=21.9
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 44788888865 5679999999999994
No 313
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.72 E-value=32 Score=31.86 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=37.8
Q ss_pred CcceEEecCCchhHHHHHHh-CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH-GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~-GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||-||+..+.+. ..|++.+-. -.+|... ..+.+++.++|++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~--------------G~lGFL~------~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM--------------GGLGFLT------EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC--------------CCCccCc------ccCHHHHHHHHHHHHcC
Confidence 45699999999999998873 567776621 0233322 46778888899888875
No 314
>PRK05595 replicative DNA helicase; Provisional
Probab=45.69 E-value=41 Score=33.80 Aligned_cols=38 Identities=5% Similarity=0.062 Sum_probs=31.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSIL 41 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~~ 41 (456)
-+++...|+.|=..=.+.+|..++ ++|+.|.|++.+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 356778889999999999998876 56999999987753
No 315
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=45.48 E-value=1.7e+02 Score=29.70 Aligned_cols=105 Identities=8% Similarity=-0.056 Sum_probs=65.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCC----------CCCeEEEecCCCCCCCCCCchHH
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQ----------YPRTRTTQITSSGRPMPPSDPLS 74 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~~ 74 (456)
+++.-.|+.|=-.=.+.++...+++|.++.|++.++..+.+...... ...+.+...... ....
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~-------~~~~ 338 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPE-------SAGL 338 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccc-------cCCh
Confidence 56777789999998999999999999999999988744333221100 002444443211 1122
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcEEEecCCccc---------------HHHHHHHcCCCeEEE
Q 046077 75 QQAAKDLEANLASRSENPDFPAPLCAIVDFQVGW---------------TKAIFWKFNIPVVSL 123 (456)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~---------------~~~~A~~lgIP~v~~ 123 (456)
+.....+.+.+++. ++++||.|..... ....++..||..+..
T Consensus 339 ~~~~~~i~~~i~~~-------~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t 395 (484)
T TIGR02655 339 EDHLQIIKSEIADF-------KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFT 395 (484)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34555556666666 8999999976532 122446667776665
No 316
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=45.32 E-value=1.4e+02 Score=24.59 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred CccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 046077 12 WQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 12 ~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 89 (456)
.-.+=.-++.+|+.|.+. ||++ ++ ++...+.+.+. .|+....+-.+... -...+.+++++-
T Consensus 12 ~d~dK~~l~~~a~~l~~ll~Gf~l-~A-T~gTa~~L~~~----~Gi~v~~vi~~~~g----------g~~~i~~~I~~g- 74 (142)
T PRK05234 12 HDHKKDDLVAWVKAHKDLLEQHEL-YA-TGTTGGLIQEA----TGLDVTRLLSGPLG----------GDQQIGALIAEG- 74 (142)
T ss_pred eccchHHHHHHHHHHHHHhcCCEE-EE-eChHHHHHHhc----cCCeeEEEEcCCCC----------CchhHHHHHHcC-
Confidence 566677899999999999 9995 34 44433444432 14444443111100 113455666655
Q ss_pred CCCCCCCCcEEEe--cCCcc--------cHHHHHHHcCCCeEEE
Q 046077 90 ENPDFPAPLCAIV--DFQVG--------WTKAIFWKFNIPVVSL 123 (456)
Q Consensus 90 ~~~~~~~pD~vI~--D~~~~--------~~~~~A~~lgIP~v~~ 123 (456)
++|+||. |.... ....+|-..|||+++-
T Consensus 75 ------~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 75 ------KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ------ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 8999996 32321 2235688899999973
No 317
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.07 E-value=36 Score=32.68 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred eEEEEcCCCc-----cCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 4 EIFVVTGYWQ-----GHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 4 ~il~~~~~~~-----GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
-|++.|..+. --..=+-.|++.|.++|++|.+.+++.-.+..+......++..- ..-+...
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~--------------l~~k~sL 242 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVI--------------LAGKTSL 242 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccc--------------cCCCCCH
Confidence 4555555233 23556889999999999999998877433332221100000000 0111123
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEech
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTF 126 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 126 (456)
..+-.+++ ..|++|+.- .+...+|..+|.|.|.++..
T Consensus 243 ~e~~~li~---------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 243 EELAALIA---------GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred HHHHHHHh---------cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 34444554 679998553 37789999999999998643
No 318
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.04 E-value=41 Score=31.06 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=37.0
Q ss_pred cceEEecCCchhHHHHHHh-----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 347 TGGFLSHCGWNSTMEAIVH-----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 347 ~~~~I~hgG~gt~~e~l~~-----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
++++|+=||=||+..+++. .+|.+.+-..+ .+|..- ..+.+++.+++.+++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL~------~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFYC------DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEcc------cCCHHHHHHHHHHHHcC
Confidence 4699999999999999874 56766663200 234332 45678888888888865
No 319
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=45.03 E-value=1.2e+02 Score=31.39 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.6
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeecc
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
..+++++|.|-| .+++|...++|+|++
T Consensus 71 ~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 71 RPGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 345899999866 567999999999988
No 320
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.97 E-value=52 Score=29.89 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=25.2
Q ss_pred CceEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 2 EREIFVVTGYWQ-GHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 2 ~~~il~~~~~~~-GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+.++++++.++. +-+ -.++|++|+++|++|.+..-
T Consensus 6 ~~k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 6 SGKKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCCEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 447777777652 222 37899999999999988753
No 321
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=44.95 E-value=1e+02 Score=30.17 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=27.3
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPG 312 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (456)
++++++|+.+. -.-+..++++|.+.|+++.+.+...
T Consensus 3 Il~~~~p~~GH--v~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 3 VLITTIGSRGD--VQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred EEEEeCCCcch--HHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 78888887654 4455578888888999988887653
No 322
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.63 E-value=39 Score=28.95 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEechhHHHH
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFTFGACAA 131 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~ 131 (456)
..++..+.+.... +.|+||++. .+..+|+.+|+|++.+.+...+..
T Consensus 112 ~e~~~~i~~~~~~----G~~viVGg~---~~~~~A~~~gl~~v~i~sg~esi~ 157 (176)
T PF06506_consen 112 EEIEAAIKQAKAE----GVDVIVGGG---VVCRLARKLGLPGVLIESGEESIR 157 (176)
T ss_dssp HHHHHHHHHHHHT----T--EEEESH---HHHHHHHHTTSEEEESS--HHHHH
T ss_pred HHHHHHHHHHHHc----CCcEEECCH---HHHHHHHHcCCcEEEEEecHHHHH
Confidence 4556666665444 899999995 358999999999999877544433
No 323
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=44.49 E-value=1.6e+02 Score=28.02 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 8 VTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
++.++.|=.-=.+.||+.|.++|+++.+++-.+..
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 45678888766788999999999999999876544
No 324
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.43 E-value=38 Score=34.91 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred CceEEEEcCC-------CccCHHHHHH---HHHHHHhCCCEEEEEcCCC
Q 046077 2 EREIFVVTGY-------WQGHLQPCIE---LCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 2 ~~~il~~~~~-------~~GHl~P~l~---LA~~L~~~Gh~Vt~~~~~~ 40 (456)
++++++.+.. =.||+.+.|. +|+-++.+||+|.|+|..+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtD 52 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTD 52 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 4566665543 2499998885 5888888999999999664
No 325
>PRK11519 tyrosine kinase; Provisional
Probab=44.29 E-value=1.6e+02 Score=31.73 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=63.6
Q ss_pred eEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCC-------CC-----------------CCCCCeEE
Q 046077 4 EIFVVTG--YWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPP-------SF-----------------TQYPRTRT 57 (456)
Q Consensus 4 ~il~~~~--~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~-------~~-----------------~~~~~i~~ 57 (456)
+++++++ |+.|=-.-.+.||..|++.|++|.++-.+.-...+.. .+ ...+++.+
T Consensus 527 kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l~~ 606 (719)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDL 606 (719)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCEEE
Confidence 5666655 5788888899999999999999999965432111110 00 01123333
Q ss_pred EecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCCCcEEEecCC--c--ccHHHHHHHcCCCeEEE
Q 046077 58 TQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPAPLCAIVDFQ--V--GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~--~--~~~~~~A~~lgIP~v~~ 123 (456)
.+. +..+.. .........+.++++.+.+ ++|+||.|.- . .-+..+|+..+...+..
T Consensus 607 lp~--g~~~~~---~~ell~s~~~~~ll~~l~~-----~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vv 666 (719)
T PRK11519 607 IPR--GQVPPN---PSELLMSERFAELVNWASK-----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVA 666 (719)
T ss_pred EeC--CCCCCC---HHHHhhHHHHHHHHHHHHh-----cCCEEEEeCCCcccchHHHHHHHHCCeEEEEE
Confidence 332 211111 1111224456777776643 8999999932 1 34566777777665553
No 326
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.19 E-value=37 Score=32.71 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCC-Ce--EEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 046077 17 QPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYP-RT--RTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPD 93 (456)
Q Consensus 17 ~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~-~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (456)
.-+.+|++.|.++|++|.+.+.+.-.+..++.....+ .. +...+ .-......+-.+++
T Consensus 200 e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l------------~g~~sL~el~ali~------- 260 (348)
T PRK10916 200 YHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNL------------AGETQLEQAVILIA------- 260 (348)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeec------------cCCCCHHHHHHHHH-------
Confidence 3578999999888999998887643222211100000 00 00000 00012334445555
Q ss_pred CCCCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 94 FPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 94 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|++|+.- .+...+|..+|+|.+.++.
T Consensus 261 --~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 --ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred --hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 669999653 3788999999999998754
No 327
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=43.97 E-value=57 Score=25.71 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=53.0
Q ss_pred ccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCC-CCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 046077 13 QGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPP-SFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRS 89 (456)
Q Consensus 13 ~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 89 (456)
-.+=.-++.+|+.|.+- |+++. + ++...+.+++ . ++....+..+... -.+.+.++++.-
T Consensus 8 d~dK~~~~~~a~~~~~ll~Gf~i~-A-T~gTa~~L~~~~-----Gi~v~~vk~~~~~----------g~~~i~~~i~~g- 69 (115)
T cd01422 8 DNKKEDLVEFVKQHQELLSRHRLV-A-TGTTGLLIQEAT-----GLTVNRMKSGPLG----------GDQQIGALIAEG- 69 (115)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEE-E-echHHHHHHHhh-----CCcEEEEecCCCC----------chhHHHHHHHcC-
Confidence 34455688999999998 99984 3 4433344554 4 5666555222111 114456666655
Q ss_pred CCCCCCCCcEEEecCC--c--------ccHHHHHHHcCCCeEEE
Q 046077 90 ENPDFPAPLCAIVDFQ--V--------GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 90 ~~~~~~~pD~vI~D~~--~--------~~~~~~A~~lgIP~v~~ 123 (456)
++|+||.-+- . ......|-..+||+++.
T Consensus 70 ------~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 70 ------EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred ------ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 8999985532 1 11234688899999973
No 328
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=43.96 E-value=96 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=24.1
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 046077 9 TGYWQGHLQPCIELCKNFSSRNYHTTLI 36 (456)
Q Consensus 9 ~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~ 36 (456)
+-+..|-..=.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4456788888999999999999999986
No 329
>PRK06270 homoserine dehydrogenase; Provisional
Probab=43.93 E-value=85 Score=30.24 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=38.5
Q ss_pred CHHHhhcccCcceEEe------cCC---chhHHHHHHhCCCeec---cCCccchhhHHHHHHHHhccEEEE
Q 046077 337 PQALILNHISTGGFLS------HCG---WNSTMEAIVHGVPFLA---WPIRGDQYFNAKLVVNYIKVGLRV 395 (456)
Q Consensus 337 p~~~~l~h~~~~~~I~------hgG---~gt~~e~l~~GvP~v~---~P~~~dQ~~na~~~~~~~G~g~~~ 395 (456)
+..+++..+.++++|- |+| .--+.++|.+|+++|+ -|...+-..-....+ +.|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~-~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAK-KNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHH-HcCCEEEE
Confidence 5667787777888877 433 3456799999999999 477544334444444 33776665
No 330
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=43.89 E-value=35 Score=34.43 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=41.3
Q ss_pred hHHHHHHhCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046077 358 STMEAIVHGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQ 429 (456)
Q Consensus 358 t~~e~l~~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 429 (456)
++.||+++|+|++..--. .-+-.++ +.--|...++ +......+++++.++..|++++.++.+-.
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~-~~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVV-HGVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEE-cCCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 778999999999988321 1122222 2124555522 12223379999999999999887776654
No 331
>PRK06321 replicative DNA helicase; Provisional
Probab=43.85 E-value=67 Score=32.53 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=31.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSI 40 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~ 40 (456)
-|++..-|+.|=..=.+.+|...+ +.|..|.|++.+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 467788889999888999999987 4599999998775
No 332
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.66 E-value=80 Score=30.10 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS 43 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~ 43 (456)
|+|+-.=+.|-..-.=.||+.|.+.|+.|.++..+.|+.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 566666799999999999999999999999999887653
No 333
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=43.43 E-value=2.4e+02 Score=25.18 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCcCcchh----hhhhCCCCeEEecccCHH----------
Q 046077 275 VLYVAFGSEVGPTREEYRE-LAGALEESPGPFIWVVQPGSEEYMPHDL----DNRVSNRGLIIHAWAPQA---------- 339 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~vp~~---------- 339 (456)
.+.||.|..+ ++. ..++..+.+-+.|.+++.+-....|.+- .+.....+..+..|-|..
T Consensus 75 ~~IVSG~A~G------iD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~R 148 (220)
T TIGR00732 75 VTIVSGLALG------IDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKR 148 (220)
T ss_pred CEEEcCchhh------HHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHH
Confidence 6777765443 232 3333344566777777776544444321 111222235555554422
Q ss_pred -HhhcccCcceEEecCC-----chhHHHHHHhCCCeeccCCccch---hhHHHHHHHHhccE
Q 046077 340 -LILNHISTGGFLSHCG-----WNSTMEAIVHGVPFLAWPIRGDQ---YFNAKLVVNYIKVG 392 (456)
Q Consensus 340 -~~l~h~~~~~~I~hgG-----~gt~~e~l~~GvP~v~~P~~~dQ---~~na~~~~~~~G~g 392 (456)
.+...-+..++|.-+| +.|+..|+..|+|+.++|-..+. ..|-..+. . |+.
T Consensus 149 Nriia~ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~-~-GA~ 208 (220)
T TIGR00732 149 NRIISGLSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCHKLIE-Q-GAA 208 (220)
T ss_pred HHHHHHhcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHH-C-CCE
Confidence 2222223335555544 35677889999999999975543 22345554 5 854
No 334
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=43.42 E-value=64 Score=28.97 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=24.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.+.++++.+ .|.+ -.++|++|.++|++|.++...
T Consensus 4 ~~k~vlItGa-s~gI--G~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 4 EGKVALVTGA-NTGL--GQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCCEEEEECC-CchH--HHHHHHHHHHCCCEEEEEcCc
Confidence 3355555544 3433 678999999999999888643
No 335
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.31 E-value=3.7e+02 Score=27.28 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=79.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcC-cchhhhhhCCCCeEEecc-------cCHHHhhc
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYM-PHDLDNRVSNRGLIIHAW-------APQALILN 343 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~-------vp~~~~l~ 343 (456)
.+.+++...||.... ....+++.|.+.|..+-+++.......+ |..+..... ..++..-| +.|..+..
T Consensus 70 ~k~IllgVtGsIAay---ka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~-~~V~~d~~~~~~~~~~~Hi~la~ 145 (475)
T PRK13982 70 SKRVTLIIGGGIAAY---KALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSG-QRVYTDLFDPESEFDAGHIRLAR 145 (475)
T ss_pred CCEEEEEEccHHHHH---HHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcC-CceEecCCCcccccCccchhhhh
Confidence 445777777777543 4445777777778877666655432222 222222221 22332222 23455443
Q ss_pred ccCcceEEecCCchhHH-------------HHHHhCCCeeccCCccch-------hhHHHHHHHHhccEEEEec------
Q 046077 344 HISTGGFLSHCGWNSTM-------------EAIVHGVPFLAWPIRGDQ-------YFNAKLVVNYIKVGLRVTD------ 397 (456)
Q Consensus 344 h~~~~~~I~hgG~gt~~-------------e~l~~GvP~v~~P~~~dQ-------~~na~~~~~~~G~g~~~~~------ 397 (456)
.++ .++|.-+=+||+. -++..++|++++|--... ..|-..+. ..|+-+.-..
T Consensus 146 ~aD-~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~-~~G~~vi~P~~g~lA~ 223 (475)
T PRK13982 146 DCD-LIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLK-RDGVHMIGPNAGEMAE 223 (475)
T ss_pred hcC-EEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHH-HCCCEEECCCCCcccc
Confidence 344 3667777777665 347789999999974433 36777787 4476654321
Q ss_pred ----CCCCcccHHHHHHHHHHHhC
Q 046077 398 ----DLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 398 ----~~~~~~~~~~l~~~i~~~l~ 417 (456)
+.-+-.++++|...+.+++.
T Consensus 224 ~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 224 RGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHh
Confidence 11134466788888877763
No 336
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=43.24 E-value=1.1e+02 Score=30.80 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=59.1
Q ss_pred CCce-EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC-CCCCCeEEEecCCCCCCCCCCchHHHHH
Q 046077 1 MERE-IFVVTG-YWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF-TQYPRTRTTQITSSGRPMPPSDPLSQQA 77 (456)
Q Consensus 1 m~~~-il~~~~-~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 77 (456)
|+|+ ++|... ..-|=..=...|++.|+++|++|..+=+.+ +.++... ....+.....+ .... . .
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp--d~~d~~~~~~~~g~~~~~l-----d~~~--~----~ 67 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP--DYIDPAYHTAATGRPSRNL-----DSWM--M----G 67 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC--CcccHHHHHHHhCCCcccC-----Ccee--C----C
Confidence 5554 555533 356788888999999999999998875421 1111100 00000000000 0000 0 1
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEecCC------------cccHHHHHHHcCCCeEEEechh
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVDFQ------------VGWTKAIFWKFNIPVVSLFTFG 127 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~------------~~~~~~~A~~lgIP~v~~~~~~ 127 (456)
...+.+.+.+..+ +.|++|.+.. ......+|+.++.|++......
T Consensus 68 ~~~v~~~~~~~~~-----~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 68 EELVRALFARAAQ-----GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred HHHHHHHHHHhcc-----cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 2334444444322 6788885422 1346789999999999986543
No 337
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=43.17 E-value=1.6e+02 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 8 VTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
++.++.|=.==.+.|++.|.++|++|.+++-.+..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 56678888777788999999999999999876544
No 338
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=42.95 E-value=97 Score=31.55 Aligned_cols=93 Identities=8% Similarity=0.026 Sum_probs=52.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|+||++-.++..| +|++.|++. |++|..+-...+.....-.... .-.+..++. .. ...
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~--~~~~~~~~~---------~d----~~~ 60 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLNPGINSVVKAT--GGEYFIGNI---------NS----PEE 60 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCChhheeecccc--cCceEecCC---------CC----HHH
Confidence 5899999999888 688888876 8988877443221111000000 001111100 00 113
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCcc---cHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQVG---WTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|+||...-.+ ......+.+|+|+..
T Consensus 61 l~~~a~~~-------~id~Vi~g~E~~l~~glad~l~~~Gi~v~G 98 (486)
T PRK05784 61 VKKVAKEV-------NPDLVVIGPEEPLFAGVADVLREEGFPVFG 98 (486)
T ss_pred HHHHHHHh-------CCCEEEECCchHHHHHHHHHHHhCCCCEEC
Confidence 45556655 899999754332 344567788999765
No 339
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=42.84 E-value=1.4e+02 Score=28.70 Aligned_cols=111 Identities=13% Similarity=0.005 Sum_probs=63.8
Q ss_pred CCceEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCC--------CCC
Q 046077 1 MEREIFVVTGY--WQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPM--------PPS 70 (456)
Q Consensus 1 m~~~il~~~~~--~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~ 70 (456)
|.++|.+++++ +.|==+-..++.+.+..+|.+|.-+-.-. ...++.... .+....+..-...+ ...
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy-~GL~~~~i~---~l~~~~v~~~~~~GGT~lgssR~~~ 76 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGY-LGLLEGDIK---PLTREDVDDLINRGGTFLGSARFPE 76 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecch-hhhcCCcce---eccccchhHHHhcCCeEEeeCCCCC
Confidence 78899999998 56777888899999999999998764332 222222100 01111110000000 000
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCCCCCcEEE---ecCCcccHHHHHHHcCCCeEEE
Q 046077 71 DPLSQQAAKDLEANLASRSENPDFPAPLCAI---VDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 71 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI---~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
... ........+-+++. +.|.+| .|.....+..+++..++|+|-.
T Consensus 77 ~~~-~e~~~~~~~~l~~~-------gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 77 FKT-EEGRKVAAENLKKL-------GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred ccc-HHHHHHHHHHHHHc-------CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 111 11222223333333 778765 7777789999999999999964
No 340
>PRK05876 short chain dehydrogenase; Provisional
Probab=42.79 E-value=85 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=24.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+.+.++++.+ .|.+ -.++|+.|+++|++|.++..
T Consensus 5 ~~k~vlVTGa-s~gI--G~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 5 PGRGAVITGG-ASGI--GLATGTEFARRGARVVLGDV 38 (275)
T ss_pred CCCEEEEeCC-CchH--HHHHHHHHHHCCCEEEEEeC
Confidence 4466777744 4555 46789999999999988653
No 341
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=42.63 E-value=75 Score=28.30 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=42.7
Q ss_pred ceEEEEcCCCccC--HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGH--LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GH--l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
++|++.-+.-+|+ .||.-.++++|..... ... .+....+|-. +....+.
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~--------------~~~-----~i~~~~lPV~----------y~~~~~~ 52 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPGKEI--------------GGA-----EIIKRQLPTV----------FGKSAEV 52 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHcccccc--------------CCc-----EEEEEEECCC----------hHHHHHH
Confidence 4588888876654 8999999999965211 111 2444444322 3335566
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCC
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQ 105 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~ 105 (456)
+.+++++. +||+||.=..
T Consensus 53 l~~~l~~~-------~Pd~vih~G~ 70 (215)
T PRK13197 53 LKEAIEEV-------QPDAVICIGQ 70 (215)
T ss_pred HHHHHHHh-------CCCEEEEecc
Confidence 66777776 9999996544
No 342
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=42.50 E-value=2.1e+02 Score=26.00 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=31.8
Q ss_pred CCc-eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 1 MER-EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 1 m~~-~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
|++ |+++-.=++.|=-.-...||..|+++|++|.++-.++
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~ 41 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 544 4444466799999999999999999999999986654
No 343
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.44 E-value=1.8e+02 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
++|.++-.+..| ..+|..|+++||+|+++...
T Consensus 4 ~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 579999888888 46888999999999999754
No 344
>PRK08506 replicative DNA helicase; Provisional
Probab=42.36 E-value=63 Score=32.76 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=32.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
-+++...|+.|=..=.+.+|...++.|+.|.|++.+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 46778888999999999999998888999999987763
No 345
>PRK11269 glyoxylate carboligase; Provisional
Probab=42.23 E-value=1.1e+02 Score=32.02 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred cceEEecCC------chhHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCG------WNSTMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG------~gt~~e~l~~GvP~v~~P 373 (456)
.+++++|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 447788888 567889999999999983
No 346
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=42.02 E-value=30 Score=35.45 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++++.+. +||++|++. ....+|+.+|||++.+
T Consensus 427 ~~l~~~l~~~-------~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 427 WHLRSLVFTE-------PVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHhhc-------CCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 4556677666 999999985 4578999999999876
No 347
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.67 E-value=49 Score=30.38 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=37.2
Q ss_pred CcceEEecCCchhHHHHHH-hCCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIV-HGVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~-~GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||-||+..+++ .++|++.+-.. .+|... ..+.+++.+++.+++++
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~------~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS------SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc------ccCHHHHHHHHHHHHcC
Confidence 4569999999999998876 57887777311 133322 35667788888887764
No 348
>PRK08818 prephenate dehydrogenase; Provisional
Probab=41.57 E-value=2e+02 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=24.4
Q ss_pred CceEEEEcC-CCccCHHHHHHHHHHHHhC-CCEEEEEcC
Q 046077 2 EREIFVVTG-YWQGHLQPCIELCKNFSSR-NYHTTLIIP 38 (456)
Q Consensus 2 ~~~il~~~~-~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~ 38 (456)
+++|+|+-. |..|- .||+.|.++ |++|+-+..
T Consensus 4 ~~~I~IIGl~GliGg-----slA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGR-----WLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHhcCCCEEEEEcC
Confidence 568889888 77775 678889865 888876643
No 349
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=41.50 E-value=2.3e+02 Score=28.68 Aligned_cols=99 Identities=8% Similarity=-0.006 Sum_probs=55.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|-++||++--+-. .+.+++.+.+.|+++..+.+........-. . .-.++.++....+ .. .-...
T Consensus 1 ~~~kvLi~~~gei-----a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~---~-aD~~~~i~~~~~~-----~y--~d~~~ 64 (472)
T PRK07178 1 MIKKILIANRGEI-----AVRIVRACAEMGIRSVAIYSEADRHALHVK---R-ADEAYSIGADPLA-----GY--LNPRR 64 (472)
T ss_pred CCcEEEEECCcHH-----HHHHHHHHHHcCCeEEEEeCCCccCCccHh---h-CCEEEEcCCCchh-----hh--cCHHH
Confidence 6678888854432 678999999999999888766422111100 0 0122223211100 00 01234
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecC--Cc--ccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDF--QV--GWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~--~~--~~~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|+|+..+ .+ .....+++.+|+|++.
T Consensus 65 i~~~a~~~-------~~D~I~pg~g~lse~~~~a~~~e~~Gi~~ig 103 (472)
T PRK07178 65 LVNLAVET-------GCDALHPGYGFLSENAELAEICAERGIKFIG 103 (472)
T ss_pred HHHHHHHH-------CCCEEEeCCCCcccCHHHHHHHHHcCCCccC
Confidence 55566655 899999542 22 2234677889999875
No 350
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.49 E-value=69 Score=31.40 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEcCC-CCcCCCCCCCCCCCCeEEEecC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRN-YHTTLIIPS-ILVSAIPPSFTQYPRTRTTQIT 61 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~G-h~Vt~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 61 (456)
+++|+++-.+..|+ .+|..|+++| ++|+++.-. ..+.++.... .+.+++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEec
Confidence 36788888777776 5789999999 999999855 4455554431 1145555543
No 351
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.41 E-value=42 Score=31.55 Aligned_cols=53 Identities=6% Similarity=0.083 Sum_probs=38.1
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||=||+..+.+. ++|++.+-.. .+|..- .++++++.+++++++++
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~------~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT------DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc------ccCHHHHHHHHHHHHcC
Confidence 46799999999999999753 6788777321 124322 35678888888888864
No 352
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=41.27 E-value=1.3e+02 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=22.7
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344888998877 4679999999999983
No 353
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=40.50 E-value=51 Score=30.52 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFP 95 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 95 (456)
..-+..|++.|.++|++|.+++.+.-.+..+......+.-+...+ . -......+..+++
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~----------~--~~~~l~e~~~li~--------- 197 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNL----------A--GKTSLRELAALLA--------- 197 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccC----------c--CCCCHHHHHHHHH---------
Confidence 346889999999999999998876532222211000000000000 0 0012234455555
Q ss_pred CCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 96 APLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 96 ~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|++|+-- .+...+|..+|+|++.++.
T Consensus 198 ~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 198 RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 569999542 3778889999999999754
No 354
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=40.20 E-value=2.4e+02 Score=25.87 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=27.7
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 4 EIFVVTGY--WQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 4 ~il~~~~~--~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+++.++++ +.|=-.=.+.||..|++.|++|.++=.
T Consensus 104 ~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 56555555 667777788999999999999999854
No 355
>PRK05973 replicative DNA helicase; Provisional
Probab=40.13 E-value=23 Score=32.09 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=32.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
-+++..-|+.|=..=.+.++...+++|..|.|++.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 35777788999999999999999889999999997764
No 356
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=40.11 E-value=1.9e+02 Score=32.14 Aligned_cols=94 Identities=10% Similarity=0.068 Sum_probs=53.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
+++++++-|. -.+.+++.|.+-|-+|..++....... ... .+. .+.. +.. ......-...+.
T Consensus 321 Krv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~-d~~-----~~~--~~~~---~~~--~vi~~~d~~el~ 382 (917)
T PRK14477 321 KRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLE-DFA-----RMK--ALMH---KDA--HIIEDTSTAGLL 382 (917)
T ss_pred CEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHH-HHH-----HHH--HhcC---CCC--EEEECCCHHHHH
Confidence 4777776442 357788899999999987665432110 000 000 0000 000 000001234556
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEe
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLF 124 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~ 124 (456)
+++++. +||++|+... ...+|+++|||++-..
T Consensus 383 ~~i~~~-------~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 383 RVMREK-------MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHhc-------CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 677776 9999999643 4678999999999643
No 357
>PRK08760 replicative DNA helicase; Provisional
Probab=40.04 E-value=50 Score=33.49 Aligned_cols=38 Identities=5% Similarity=-0.004 Sum_probs=31.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSS-RNYHTTLIIPSIL 41 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~-~Gh~Vt~~~~~~~ 41 (456)
-+++..-|+.|=..=.+.+|...+. .|+.|.|++.+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 4677888899999999999998874 5999999987763
No 358
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.03 E-value=1.5e+02 Score=25.54 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=23.0
Q ss_pred CCcEEEecCC--cccHHHHHHHcCCCeEEE
Q 046077 96 APLCAIVDFQ--VGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 96 ~pD~vI~D~~--~~~~~~~A~~lgIP~v~~ 123 (456)
++|.|++=.. ...+..+|.++|+|++..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 7999995432 368899999999999986
No 359
>PRK06194 hypothetical protein; Provisional
Probab=39.83 E-value=1e+02 Score=28.43 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=22.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+.++++.+ .|-+ -..||++|.++|++|+++..
T Consensus 7 k~vlVtGa-sggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGA-ASGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCC-ccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 45556644 3443 46789999999999988754
No 360
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.75 E-value=1.1e+02 Score=30.66 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.7
Q ss_pred cceEEecCCch------hHHHHHHhCCCeecc
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
.+++++|+|-| .+++|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44888888866 567999999999999
No 361
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=39.60 E-value=56 Score=29.08 Aligned_cols=38 Identities=13% Similarity=-0.086 Sum_probs=34.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
.+|++.+.++-.|-....=++-.|..+|++|++++..-
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 48999999999999999999999999999999998653
No 362
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.50 E-value=44 Score=34.81 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=38.8
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+-||=||+..+.+. ++|++.+-.. .+|... ..+.+++.++|.+++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGFL~------~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGFLT------EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCcCc------ccCHHHHHHHHHHHHcC
Confidence 46799999999999998774 7788888321 133322 45678888888888865
No 363
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=39.46 E-value=2.2e+02 Score=24.76 Aligned_cols=99 Identities=10% Similarity=-0.099 Sum_probs=59.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc-CCCCCCC-C-CCCCeEEEecCCCCCCCCCC-chHHHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV-SAIPPSF-T-QYPRTRTTQITSSGRPMPPS-DPLSQQAAK 79 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~-~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (456)
-|.+++..+.|-....+-+|-+-.-+|.+|-++-.-... ..-+... . ....+.|+.++.+..-.... .........
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~~aa~~ 109 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADIAAAKA 109 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHHHHHHH
Confidence 477889999999999999999999999999887422111 1111110 0 11258888887655322221 112233444
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCc
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQV 106 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~ 106 (456)
.+....+.+... +.|+||.|-+.
T Consensus 110 ~w~~a~~~l~~~----~ydlviLDEl~ 132 (198)
T COG2109 110 GWEHAKEALADG----KYDLVILDELN 132 (198)
T ss_pred HHHHHHHHHhCC----CCCEEEEehhh
Confidence 444444444332 89999999664
No 364
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.24 E-value=45 Score=34.16 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++++++. +||+||++. +...+|+.+|||++.+
T Consensus 364 ~ei~~~I~~~-------~pdliiGs~---~er~ia~~lgiP~~~i 398 (513)
T CHL00076 364 TEVGDMIARV-------EPSAIFGTQ---MERHIGKRLDIPCGVI 398 (513)
T ss_pred HHHHHHHHhc-------CCCEEEECc---hhhHHHHHhCCCEEEe
Confidence 4556667766 999999995 5566789999999875
No 365
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.14 E-value=52 Score=32.51 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAI 45 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 45 (456)
|+++-.=+-|-..-.=.||+.|.++|++|.+++.+.++...
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 55565568889999999999999999999999988776543
No 366
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=38.78 E-value=47 Score=28.82 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=34.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEcCCCCcCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSS-RNYHTTLIIPSILVSAIP 46 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~-~Gh~Vt~~~~~~~~~~~~ 46 (456)
++|++.-.|+-| .+=...|.++|.+ .||+|.++.++...+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 467777777777 6779999999999 599999999987655443
No 367
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.67 E-value=64 Score=33.55 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=22.7
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345888888866 6779999999999984
No 368
>PRK09165 replicative DNA helicase; Provisional
Probab=38.61 E-value=65 Score=32.89 Aligned_cols=39 Identities=8% Similarity=-0.050 Sum_probs=30.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC---------------CCEEEEEcCCCCc
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSR---------------NYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~---------------Gh~Vt~~~~~~~~ 42 (456)
-+++..-|+.|=..=.+.+|...+.+ |..|.|++.+...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 36778888999888888888887643 7899999877643
No 369
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.55 E-value=48 Score=31.20 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=38.6
Q ss_pred CcceEEecCCchhHHHHHHh----CCCeeccCCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCC
Q 046077 346 STGGFLSHCGWNSTMEAIVH----GVPFLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSD 418 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l~~----GvP~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 418 (456)
.++++|+=||-||+.++++. ++|++.+... .+|.. ...+.+++.++|.+++++
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcC
Confidence 35699999999999998763 6788877431 13322 246778899999988864
No 370
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=38.36 E-value=1.4e+02 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=17.3
Q ss_pred hcccCcceEEecCCchhHHHH---HHhCC-Cee
Q 046077 342 LNHISTGGFLSHCGWNSTMEA---IVHGV-PFL 370 (456)
Q Consensus 342 l~h~~~~~~I~hgG~gt~~e~---l~~Gv-P~v 370 (456)
..+++ .+++--||.||.-|. +..+. |..
T Consensus 108 ~~~ad-a~V~~pGG~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 108 VRSAD-AFIVLPGGFGTLEELFEALTLGQTGVH 139 (205)
T ss_pred HHhCC-EEEEeCCCcchHHHHHHHHHHhhCCcc
Confidence 33344 467778899998665 44454 443
No 371
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=38.28 E-value=85 Score=29.29 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHH
Q 046077 285 GPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV 364 (456)
Q Consensus 285 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~ 364 (456)
..+.+..+++-+++.+...+.||.+.++.. -.++.++++...+-+||. .+|=.+-..++.-+++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g--------------a~rlL~~ld~~~~~~~pK--~~iGySDiTaL~~~l~ 108 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG--------------ANRLLPYLDYDLIRANPK--IFVGYSDITALHLALY 108 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC--------------HHHhhhhCCHHHHhhCCe--EEEEecHHHHHHHHHH
Confidence 334677778999999999999999987642 133445666666656666 7777777777776664
Q ss_pred h--CCCeeccCC
Q 046077 365 H--GVPFLAWPI 374 (456)
Q Consensus 365 ~--GvP~v~~P~ 374 (456)
. |++.+--|.
T Consensus 109 ~~~g~~t~hGp~ 120 (282)
T cd07025 109 AKTGLVTFHGPM 120 (282)
T ss_pred HhcCceEEECcc
Confidence 3 666666664
No 372
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=38.01 E-value=38 Score=32.71 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCC--CCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPSILVSA--IPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPD 93 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (456)
..-+.+|++.|.++|++|.+++.+.-.+. .++... .. ... .. ....-+.....+-.+++
T Consensus 201 ~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~---~~-----~~~--~~--~~l~g~~sL~el~ali~------- 261 (352)
T PRK10422 201 NDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQ---GC-----QTP--PV--TALAGKTTFPELGALID------- 261 (352)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHH---hc-----CCC--cc--ccccCCCCHHHHHHHHH-------
Confidence 34578899999888999988866521111 011000 00 000 00 00000112344555555
Q ss_pred CCCCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 94 FPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 94 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|++|+.-. +...+|..+|+|.+.++.
T Consensus 262 --~a~l~v~nDS--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 --HAQLFIGVDS--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred --hCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 6699996533 788999999999998753
No 373
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=37.95 E-value=3.4e+02 Score=27.17 Aligned_cols=98 Identities=5% Similarity=0.027 Sum_probs=53.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC--CCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS--AIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
|.++|+++.- |-+ .+.+++.+.+.|++|..+.+..... .+... . .+..++..... ... .-.
T Consensus 1 ~~kkili~g~---g~~--~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~a-----D-~~~~~~~~~~~----~~y--~d~ 63 (449)
T TIGR00514 1 MLDKILIANR---GEI--ALRILRACKELGIKTVAVHSTADRDALHVLLA-----D-EAVCIGPAPSA----KSY--LNI 63 (449)
T ss_pred CcceEEEeCC---CHH--HHHHHHHHHHcCCeEEEEEChhhhcccccccC-----C-EEEEcCCCCch----hch--hCH
Confidence 7778998843 332 6788888888999999986642211 11111 1 22222111100 000 002
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecC--Cccc--HHHHHHHcCCCeEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDF--QVGW--TKAIFWKFNIPVVS 122 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~--~~~~--~~~~A~~lgIP~v~ 122 (456)
..+.++.++. ++|+|+... .+.. ...+++.+|+|++.
T Consensus 64 ~~l~~~a~~~-------~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g 104 (449)
T TIGR00514 64 PNIISAAEIT-------GADAIHPGYGFLSENANFAEQCERSGFTFIG 104 (449)
T ss_pred HHHHHHHHHh-------CCCEEEeCCCccccCHHHHHHHHHCCCcEEC
Confidence 2345555555 899998542 2222 24578899999875
No 374
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=37.91 E-value=2e+02 Score=30.03 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=22.7
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 345888998876 5669999999999994
No 375
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=37.83 E-value=38 Score=29.94 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPP 47 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 47 (456)
|++||++...++.. .+-...|.+.|. +||+|.++.++...+++..
T Consensus 18 ~~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 18 RKPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 56788887767554 456678999998 4999999999988777764
No 376
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.82 E-value=3.7e+02 Score=27.98 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=55.1
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHH--HHhCCCee
Q 046077 293 ELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEA--IVHGVPFL 370 (456)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~--l~~GvP~v 370 (456)
.+-.++...+.+++.++|.+.-..-..++..... +..|-+=+++.++|+|.+... ..++-+..
T Consensus 430 aiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r---------------~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~ 494 (572)
T PRK08979 430 AMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQ---------------YDIPVKIINLNNRFLGMVKQWQDMIYQGRHS 494 (572)
T ss_pred HHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHH---------------cCCCeEEEEEeCCccHHHHHHHHHHhCCccc
Confidence 3555566667788888887642111112211111 111333378899999987643 22333221
Q ss_pred ccCCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 371 AWPIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 371 ~~P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.. .....++.++..+ .+|+ |.++ -+.++|..++++.+.
T Consensus 495 ~~-~~~~~~d~~~~A~-a~G~~~~~v-------~~~~eL~~al~~a~~ 533 (572)
T PRK08979 495 HS-YMDSVPDFAKIAE-AYGHVGIRI-------SDPDELESGLEKALA 533 (572)
T ss_pred cc-CCCCCCCHHHHHH-HCCCeEEEE-------CCHHHHHHHHHHHHh
Confidence 11 1112356788787 5565 4444 468899999998874
No 377
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=37.77 E-value=1.1e+02 Score=30.33 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=50.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
|+|+++-.+..+| .|++.+++-|+.++++..+......... ...+..+ +. . -...+.
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~-------~----d~~~l~ 57 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNAGTARLA-----KNKNVAI--SI-------T----DIEALV 57 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCHHHhhhc-----ccccccC--CC-------C----CHHHHH
Confidence 4788888777755 6888888888777777554322111000 0011000 00 0 133455
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCc---ccHHHHHHHcCCCeEE
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQV---GWTKAIFWKFNIPVVS 122 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~---~~~~~~A~~lgIP~v~ 122 (456)
++.++. ++|+||...-. .......+.+|+|++.
T Consensus 58 ~~~~~~-------~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 93 (423)
T TIGR00877 58 EFAKKK-------KIDLAVIGPEAPLVLGLVDALEEAGIPVFG 93 (423)
T ss_pred HHHHHh-------CCCEEEECCchHHHHHHHHHHHHCCCeEEC
Confidence 666666 89999865322 2235577888999764
No 378
>PRK07856 short chain dehydrogenase; Provisional
Probab=37.64 E-value=2.2e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=23.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.++++.++.| + -.++|+.|+++|++|.++...
T Consensus 7 k~~lItGas~g-I--G~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRG-I--GAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCch-H--HHHHHHHHHHCCCEEEEEeCC
Confidence 56666655433 2 467899999999999888654
No 379
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=37.58 E-value=1.5e+02 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.4
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+.||...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44889998866 6679999999999993
No 380
>smart00096 UTG Uteroglobin.
Probab=37.52 E-value=1.5e+02 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 404 KKGDIAEGIERLMSDEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 404 ~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
+.++....+...-.|+++.+++.++++-... .+......+.++++.+.
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~-L~~~~k~~i~~ll~kI~ 64 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDT-LPQETRENILKLTEKIY 64 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 6788999999998899999999999877665 33445566667766653
No 381
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.48 E-value=2.1e+02 Score=22.69 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCEEEEEc
Q 046077 18 PCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 18 P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
-++.+|++|+++|++|+..-
T Consensus 24 ~~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATD 43 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEe
Confidence 36889999999999988753
No 382
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.42 E-value=1.3e+02 Score=31.26 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.5
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeecc
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
..+++++|.|-| .+++|...++|+|++
T Consensus 66 ~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i 98 (563)
T PRK08527 66 KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLI 98 (563)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 345889998866 677999999999998
No 383
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=37.40 E-value=1.1e+02 Score=31.04 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=61.1
Q ss_pred EecccCHHH---hhcccCcceEEe--cCCchhHH-HHHHhCCC---eeccCCccchhhHHHHHHHHhc-cEEEEecCCCC
Q 046077 332 IHAWAPQAL---ILNHISTGGFLS--HCGWNSTM-EAIVHGVP---FLAWPIRGDQYFNAKLVVNYIK-VGLRVTDDLSE 401 (456)
Q Consensus 332 ~~~~vp~~~---~l~h~~~~~~I~--hgG~gt~~-e~l~~GvP---~v~~P~~~dQ~~na~~~~~~~G-~g~~~~~~~~~ 401 (456)
+.+-+++.+ ++.-+++ ++|| +.|+|.+. |-+++... ++++- ++.-|. + .|+ .++.+++
T Consensus 357 ~~~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLS----efaGaa--~-~L~~~al~VNP---- 424 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILS----EFAGAA--E-QLSEAALLVNP---- 424 (474)
T ss_dssp E-S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEE----TTBGGG--G-T-TTS-EEE-T----
T ss_pred EecCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEee----ccCCHH--H-HcCCccEEECC----
Confidence 333455443 4544554 3343 67988665 88888776 33331 222221 1 345 5588854
Q ss_pred cccHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 046077 402 TVKKGDIAEGIERLMS--DEEMKTRAAILQVKFEQGFPASSVAALNAFSDFIS 452 (456)
Q Consensus 402 ~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~ 452 (456)
.+.++++++|.+.|+ .++-+++.+++.+.+... ++...++.+++.|+
T Consensus 425 -~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~---~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 425 -WDIEEVADAIHEALTMPPEERKERHARLREYVREH---DVQWWAESFLRDLK 473 (474)
T ss_dssp -T-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC---CHHHHHHHHHHHhh
Confidence 588999999999997 346888888888888886 88899999998885
No 384
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.38 E-value=1.4e+02 Score=31.03 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=22.7
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|.+.++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345888898866 5679999999999983
No 385
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=37.35 E-value=1.2e+02 Score=31.35 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44888888866 6779999999999993
No 386
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=37.33 E-value=1.5e+02 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.6
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+++|...++|+|++-
T Consensus 77 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 109 (585)
T CHL00099 77 VGVCFATSGPGATNLVTGIATAQMDSVPLLVIT 109 (585)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44888988866 6779999999999994
No 387
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.33 E-value=30 Score=29.16 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=24.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
+++|.|+-.+..|. .+|+.|.++||+|++..
T Consensus 1 m~~Ig~IGlG~mG~-----~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGS-----AMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHH-----HHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHHH-----HHHHHHHhcCCeEEeec
Confidence 46888888888875 78999999999999875
No 388
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.28 E-value=5.1e+02 Score=27.12 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=70.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEec
Q 046077 274 SVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSH 353 (456)
Q Consensus 274 ~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~h 353 (456)
+.|-|-.||.. +...+.++...|+..|..+-+-+.+. ...|+.+.+. +...+ -..++++|.=
T Consensus 411 ~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sa--hr~~~~~~~~-----------~~~~~---~~~~~v~i~~ 472 (577)
T PLN02948 411 PLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSA--HRTPERMFSY-----------ARSAH---SRGLQVIIAG 472 (577)
T ss_pred CeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECC--ccCHHHHHHH-----------HHHHH---HCCCCEEEEE
Confidence 34555555443 35556667777777776655444332 2344433322 11111 0233477777
Q ss_pred CCchhHHHHHH---hCCCeeccCCccc---hhhHHHHHHHHh--ccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHH
Q 046077 354 CGWNSTMEAIV---HGVPFLAWPIRGD---QYFNAKLVVNYI--KVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRA 425 (456)
Q Consensus 354 gG~gt~~e~l~---~GvP~v~~P~~~d---Q~~na~~~~~~~--G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a 425 (456)
.|.-.-+-.+. .-+|+|.+|.... -.+--.-+. ++ |+.+..- ......++..++-.|-. +.|++++++.
T Consensus 473 ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v-~i~~~~~aa~~a~~i~~-~~~~~~~~~~ 549 (577)
T PLN02948 473 AGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATV-AIGNATNAGLLAVRMLG-ASDPDLLDKM 549 (577)
T ss_pred cCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEE-ecCChHHHHHHHHHHHh-cCCHHHHHHH
Confidence 77543332222 3579999998532 122112222 34 4322211 11134556666655532 3578888888
Q ss_pred HHHHHHHHhc
Q 046077 426 AILQVKFEQG 435 (456)
Q Consensus 426 ~~l~~~~~~~ 435 (456)
+..++++++.
T Consensus 550 ~~~~~~~~~~ 559 (577)
T PLN02948 550 EAYQEDMRDM 559 (577)
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 389
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=37.12 E-value=2.9e+02 Score=24.32 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=65.1
Q ss_pred eEEEecCCCCCCCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEec
Q 046077 275 VLYVAFGSEVGPTREEYRE-LAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSH 353 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~h 353 (456)
+-+.-+||....+++.+.+ ..+.++.....|++.++++.. .|. + ---.++| ..
T Consensus 32 i~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpa--aPG-------P--------~kARE~l--~~------- 85 (277)
T COG1927 32 IEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPA--APG-------P--------KKAREIL--SD------- 85 (277)
T ss_pred ceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCC--CCC-------c--------hHHHHHH--hh-------
Confidence 5566789999889888887 566777778889988877532 111 0 0011223 11
Q ss_pred CCchhHHHHHHhCCCeeccCCccchhh--HHHHHHHHhccEEEEecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 046077 354 CGWNSTMEAIVHGVPFLAWPIRGDQYF--NAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIERLMSDEEMKTRAAILQVK 431 (456)
Q Consensus 354 gG~gt~~e~l~~GvP~v~~P~~~dQ~~--na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 431 (456)
.|+|.+++ +|-+. .-..++++ |.|..+ +..+-+..+=+++|.-.+|..--..+.+.
T Consensus 86 -----------s~~Paiii---gDaPg~~vkdeleeq-GlGYIi-------vk~DpmiGArREFLDPvEMA~fNaDv~kV 143 (277)
T COG1927 86 -----------SDVPAIII---GDAPGLKVKDELEEQ-GLGYII-------VKADPMIGARREFLDPVEMASFNADVMKV 143 (277)
T ss_pred -----------cCCCEEEe---cCCccchhHHHHHhc-CCeEEE-------ecCCcccchhhhhcCHHHHHhhhhHHHHH
Confidence 48899988 44442 23456645 999887 33444555556666433454433344444
Q ss_pred HHh
Q 046077 432 FEQ 434 (456)
Q Consensus 432 ~~~ 434 (456)
+..
T Consensus 144 La~ 146 (277)
T COG1927 144 LAA 146 (277)
T ss_pred HHh
Confidence 443
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.03 E-value=1.5e+02 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCCCcCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSILVSA 44 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~~~~~ 44 (456)
|+++..++.|=..=...||..|. ++|.+|.+++.+.++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 56777779999999999999997 58999999999876654
No 391
>PHA02542 41 41 helicase; Provisional
Probab=36.96 E-value=56 Score=33.10 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=33.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
-+++..-|+.|=..=.+.+|...++.|+.|.|++-+...
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 367778889999999999999999889999999877533
No 392
>PLN02470 acetolactate synthase
Probab=36.95 E-value=3e+02 Score=28.74 Aligned_cols=112 Identities=14% Similarity=-0.004 Sum_probs=59.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhH
Q 046077 280 FGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNST 359 (456)
Q Consensus 280 ~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~ 359 (456)
+||++. ..=..+-.++...+.+++.++|.+.-..-..++...... ..+-+=+++.++|+|.+
T Consensus 425 ~g~mG~---glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~---------------~l~v~ivV~NN~~yg~i 486 (585)
T PLN02470 425 LGAMGF---GLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVE---------------NLPVKIMVLNNQHLGMV 486 (585)
T ss_pred cccccc---hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHh---------------CCCeEEEEEeCCcchHH
Confidence 355554 233335556666678899888876421111222211111 01222278899999887
Q ss_pred HHH--HHhCCCee--cc--CCcc--chhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 360 MEA--IVHGVPFL--AW--PIRG--DQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 360 ~e~--l~~GvP~v--~~--P~~~--dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.+. ..++.+.. .. |-.. ..++.++.++ .+|+ |.++ -+.++|.+++++.+.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~-a~G~~~~~v-------~~~~el~~al~~a~~ 545 (585)
T PLN02470 487 VQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAE-GCKIPAARV-------TRKSDLREAIQKMLD 545 (585)
T ss_pred HHHHHHHhCCceeeeecCccccccCCCCCHHHHHH-HCCCeEEEE-------CCHHHHHHHHHHHHh
Confidence 643 22332211 11 1100 1256677777 5565 4444 368999999998874
No 393
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=36.58 E-value=3e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
.++++++.++ |.+ -.++|+.|+++|++|.+....
T Consensus 9 ~k~vlItG~s-~gI--G~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 9 GKIIIVTGGS-SGI--GLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CCEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3666777444 332 367899999999999987644
No 394
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.56 E-value=4.1e+02 Score=27.87 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHH--HHhCCCee
Q 046077 293 ELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEA--IVHGVPFL 370 (456)
Q Consensus 293 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~--l~~GvP~v 370 (456)
.+-.++...+.+++.++|.+.-..-..++..... +.-|-+=+++.++|+|.+... +.+|....
T Consensus 439 aiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r---------------~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~ 503 (595)
T PRK09107 439 ALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQ---------------YNLPVKIFILNNQYMGMVRQWQQLLHGNRLS 503 (595)
T ss_pred HHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHH---------------hCCCeEEEEEeCCccHHHHHHHHHHhCCccc
Confidence 3555666667788888887642111122211110 111223378899999987643 33443211
Q ss_pred ccCCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 371 AWPIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 371 ~~P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.. +....++.++.++ .+|+ |.++ -+.++|.+++++.+.
T Consensus 504 ~~-~~~~~~d~~~lA~-a~G~~~~~v-------~~~~el~~al~~a~~ 542 (595)
T PRK09107 504 HS-YTEAMPDFVKLAE-AYGAVGIRC-------EKPGDLDDAIQEMID 542 (595)
T ss_pred cc-cCCCCCCHHHHHH-HCCCeEEEE-------CCHHHHHHHHHHHHh
Confidence 11 1112356787777 4453 3333 478999999999874
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.55 E-value=1.3e+02 Score=28.65 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=33.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
-|+++-.++-|=..=+..||..|..+|++|.+++.+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 456777779999999999999999999999999887654
No 396
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.41 E-value=55 Score=33.66 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++.+++. +||+||+++ ....+|+.+|||++.+
T Consensus 352 ~el~~~i~~~-------~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 352 LEVEDAIAEA-------APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHHHhc-------CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 4666777776 999999885 5677999999999875
No 397
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.35 E-value=3.3e+02 Score=24.64 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=29.7
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHH-HhCCCCEEEEEcCCC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGAL-EESPGPFIWVVQPGS 313 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al-~~~~~~~i~~~~~~~ 313 (456)
+-...+||-....+++..+....+ ++.+..|+++++++.
T Consensus 32 I~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~ 71 (277)
T PRK00994 32 IDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNP 71 (277)
T ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCC
Confidence 555667888888899988755544 678889999998763
No 398
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=36.31 E-value=2.1e+02 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 14 GHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 14 GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+ ..-+.+++.|.+.|++|.++..+
T Consensus 10 gd-~r~~~~~~~l~~~G~~v~~~g~~ 34 (296)
T PRK08306 10 GD-ARQLELIRKLVELGAKVSLVGFD 34 (296)
T ss_pred Cc-HHHHHHHHHHHHCCCEEEEEecc
Confidence 44 56789999999999999998765
No 399
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=36.29 E-value=1.2e+02 Score=27.32 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=23.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.++++ ++.|.+ -..+|++|+++|++|.+....
T Consensus 11 k~vlIt-Ga~g~i--G~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 11 RRALVT-GSSQGI--GYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CEEEEE-CCcchH--HHHHHHHHHHcCCEEEEEeCC
Confidence 445555 344544 578899999999999876543
No 400
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.29 E-value=1.4e+02 Score=26.68 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
|..+.++++ ++.|.+ -..+++.|.++|++|.+..
T Consensus 2 ~~~~~vlIt-Ga~g~i--G~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 2 FSGKVALVT-GSSRGI--GKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred CCCCEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEc
Confidence 443455555 444555 5679999999999988653
No 401
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=36.28 E-value=39 Score=28.74 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.2
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
...++++|.|-| .+.++...+.|+|++.
T Consensus 64 ~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~ 97 (172)
T PF02776_consen 64 RPGVVIVTSGPGATNALTGLANAYADRIPVLVIT 97 (172)
T ss_dssp SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEE
T ss_pred cceEEEeecccchHHHHHHHhhcccceeeEEEEe
Confidence 344888888754 6778899999999985
No 402
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=36.28 E-value=1.2e+02 Score=24.94 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEc
Q 046077 272 RGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQ 310 (456)
Q Consensus 272 ~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (456)
...+|+|++|+......+.++++++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 4469999999999888889999988885 3567766554
No 403
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=36.27 E-value=40 Score=31.58 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
|.++|.|+-.+..|. .+|+.|++.||+|++...
T Consensus 1 ~~~~IgviG~G~mG~-----~~a~~l~~~g~~v~~~d~ 33 (296)
T PRK11559 1 MTMKVGFIGLGIMGK-----PMSKNLLKAGYSLVVYDR 33 (296)
T ss_pred CCceEEEEccCHHHH-----HHHHHHHHCCCeEEEEcC
Confidence 788999997666664 788999999999987643
No 404
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.09 E-value=77 Score=28.70 Aligned_cols=33 Identities=6% Similarity=-0.025 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
.++++++.++ |. =-.++|++|+++|++|.++..
T Consensus 8 ~k~~lItGas-~g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITGCN-TG--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEecC
Confidence 3667777554 33 356889999999999988754
No 405
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.08 E-value=54 Score=27.51 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
++|+++-.+..| ...++.|.+.||+||++++
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 367777666444 6889999999999999953
No 406
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.96 E-value=68 Score=25.20 Aligned_cols=35 Identities=6% Similarity=-0.165 Sum_probs=30.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+++..+.++..|-....-++..|.++|++|.++..
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 36778888999999999999999999999999754
No 407
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=35.93 E-value=45 Score=31.61 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=28.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
+|+|+++-.++.|= .+|..|++.||+|++++...
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 56999999888885 57888999999999998764
No 408
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=35.83 E-value=3.4e+02 Score=28.03 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHH--HHhCCCeec
Q 046077 294 LAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEA--IVHGVPFLA 371 (456)
Q Consensus 294 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~--l~~GvP~v~ 371 (456)
+-.++...+.+++.++|.+.-..-..++..... +..+-+=+++.++|+|.+... ..++.+...
T Consensus 411 iGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~---------------~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~ 475 (548)
T PRK08978 411 IGAQVARPDDTVICVSGDGSFMMNVQELGTIKR---------------KQLPVKIVLLDNQRLGMVRQWQQLFFDERYSE 475 (548)
T ss_pred HHHHHhCCCCcEEEEEccchhhccHHHHHHHHH---------------hCCCeEEEEEeCCccHHHHHHHHHHhCCccee
Confidence 555666667899999987642111122211111 011222278899999877543 222322111
Q ss_pred cCCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 372 WPIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 372 ~P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
. ...+.++.++.++ .+|+ |.++ -+.++|.+++++.+.
T Consensus 476 ~-~~~~~~d~~~la~-a~G~~~~~v-------~~~~el~~al~~a~~ 513 (548)
T PRK08978 476 T-DLSDNPDFVMLAS-AFGIPGQTI-------TRKDQVEAALDTLLN 513 (548)
T ss_pred c-CCCCCCCHHHHHH-HCCCeEEEE-------CCHHHHHHHHHHHHh
Confidence 1 1113467788777 4454 3333 468899999998874
No 409
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.82 E-value=36 Score=29.28 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=32.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIP 46 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 46 (456)
+||++.-.++.| .+-...|.+.|.++|++|.++.++...+.+.
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 366666666654 4566799999999999999999887655544
No 410
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=35.73 E-value=28 Score=28.25 Aligned_cols=31 Identities=3% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCcCCCCC
Q 046077 17 QPCIELCKNFSSRNYHTTLIIPSILVSAIPP 47 (456)
Q Consensus 17 ~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 47 (456)
--++-|+..|.++||+|++++++.....++-
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 3467889999999999999999976655443
No 411
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=35.67 E-value=21 Score=34.60 Aligned_cols=101 Identities=12% Similarity=-0.073 Sum_probs=49.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhh
Q 046077 8 VTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLAS 87 (456)
Q Consensus 8 ~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 87 (456)
+-.++-|..+-...+++...++|+.|.++..++..+ ... .-.+.+.--|....+ ....-......++.+.+.
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~d---d~~--v~~v~~~GsP~v~~E---~lp~g~e~~~a~~~le~~ 87 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPD---DDL--VVPVGMMGSPTVSVE---KLPSGDEALRAVEALEKY 87 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--S---SE---EEEEEEEE-HHHTT----SS-HHHHHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCC---CCc--EeEEEEeCCChHHhc---cCCCchHHHHHHHHHHHh
Confidence 446777888888899999999999999999885422 110 001222221111111 111222233334444333
Q ss_pred hcCCCCCCCCcEEEecCC----cccHHHHHHHcCCCeE
Q 046077 88 RSENPDFPAPLCAIVDFQ----VGWTKAIFWKFNIPVV 121 (456)
Q Consensus 88 ~~~~~~~~~pD~vI~D~~----~~~~~~~A~~lgIP~v 121 (456)
... +++.|++--. ..-+..+|..+|+|++
T Consensus 88 ~g~-----~~~av~~~EiGG~N~~~pl~~Aa~~GlPvv 120 (353)
T PF06032_consen 88 LGR-----KIDAVIPIEIGGSNGLNPLLAAAQLGLPVV 120 (353)
T ss_dssp TT-------EEEEE-SSSSCCHHHHHHHHHHHHT-EEE
T ss_pred hCC-----CccEEeehhcCccchhHHHHHHHHhCCCEE
Confidence 321 8999997533 3455668889999988
No 412
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.65 E-value=80 Score=28.73 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=23.3
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 4 EIFVVTGY--WQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 4 ~il~~~~~--~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
++++++.+ +.| =-.++|+.|+++|++|.+..
T Consensus 8 k~~lItGa~~s~G---IG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSS---IAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcch---HHHHHHHHHHHCCCEEEEec
Confidence 66777766 343 34678999999999998865
No 413
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.43 E-value=39 Score=31.97 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=28.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+|+|.|+-.+..|. ++|+.|.++||+|++....
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 35899998888886 7999999999999988754
No 414
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=35.41 E-value=79 Score=30.31 Aligned_cols=84 Identities=19% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCc-----CCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPSILV-----SAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSE 90 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 90 (456)
..-+..|++.|.++|++|.+++.+.-. +.+.+.. ..+. ... ..-+....++..+++
T Consensus 199 ~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~-~~~~--~~~------------l~g~~sL~el~ali~---- 259 (344)
T TIGR02201 199 NDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGC-QTPR--VTS------------LAGKLTLPQLAALID---- 259 (344)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhC-CCCc--ccc------------cCCCCCHHHHHHHHH----
Confidence 345678999998889999988765311 1111110 0000 000 000112344555565
Q ss_pred CCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 91 NPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 91 ~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
+.|++|+.- .+...+|..+|+|.+.++.
T Consensus 260 -----~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 -----HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred -----hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 669999653 4788999999999998743
No 415
>PRK07524 hypothetical protein; Provisional
Probab=35.26 E-value=2.7e+02 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.6
Q ss_pred cceEEecCCch------hHHHHHHhCCCeecc
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
.++++.|.|-| .+++|...++|+|++
T Consensus 65 ~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 65 PGVCFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred CeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34888888866 677999999999988
No 416
>PRK05636 replicative DNA helicase; Provisional
Probab=35.11 E-value=46 Score=34.01 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFS-SRNYHTTLIIPSIL 41 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~-~~Gh~Vt~~~~~~~ 41 (456)
-|++...|+.|=..=.+.+|...+ ++|..|.|++.+..
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 467778889998888889998876 56889999987653
No 417
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=35.06 E-value=1.6e+02 Score=31.26 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCcEEEe
Q 046077 76 QAAKDLEANLASRSENPDFPAPLCAIV 102 (456)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~pD~vI~ 102 (456)
.....+.+++++. +||.|++
T Consensus 509 ~~v~~i~~li~~~-------kP~~V~~ 528 (652)
T PRK02122 509 ADVEIVMDLLEEI-------KPHQIFV 528 (652)
T ss_pred HHHHHHHHHHHHc-------CCCEEEE
Confidence 4556778888888 9999975
No 418
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.06 E-value=56 Score=33.51 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 80 DLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 80 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
.+++++++. +||+||+++ ....+|+.+|||++.+
T Consensus 355 ei~~~i~~~-------~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 355 EVADAIAAL-------EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHHhc-------CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 556666666 999999995 5677899999999875
No 419
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=35.05 E-value=30 Score=31.55 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
.-.|+++|+++||+|++++|..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 3468999999999999999876
No 420
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.05 E-value=1.5e+02 Score=30.82 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.4
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44889998865 6779999999999993
No 421
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=34.97 E-value=1.9e+02 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 16 LQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 16 l~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.-...+.+.|.++||+|.++...
T Consensus 17 ~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 17 LVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeec
Confidence 667888999999999999998765
No 422
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.85 E-value=50 Score=32.88 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+.+++++. +||++|+... ...+|+++|||+..+
T Consensus 359 ~e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 359 YELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeC
Confidence 4556777777 9999999865 567899999999865
No 423
>PRK07064 hypothetical protein; Provisional
Probab=34.84 E-value=2.2e+02 Score=29.36 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.8
Q ss_pred cceEEecCCch------hHHHHHHhCCCeecc
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
.+++++|.|-| .+.+|...++|+|++
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i 98 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHI 98 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 44888998866 567999999999988
No 424
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=34.68 E-value=1.6e+02 Score=25.17 Aligned_cols=95 Identities=15% Similarity=0.004 Sum_probs=48.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCC-----CCCCCeEEEecCCCCCCCCCC-chHHHHH
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSF-----TQYPRTRTTQITSSGRPMPPS-DPLSQQA 77 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~-~~~~~~~ 77 (456)
.|-+++..+.|=....+.+|-+-+.+|.+|.++=.- +.-...+ ...+++.+.....+....... .......
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFl---Kg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~~~~~~~ 81 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFL---KGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEEEDRAAA 81 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS-----SS--HHHHHHGGGT--EEEE--TT----GGGHHHHHHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEe---cCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcHHHHHHH
Confidence 477889899999999999999999999999997422 2211111 123457777766533221111 1112333
Q ss_pred HHHHHHHHhhhcCCCCCCCCcEEEecCC
Q 046077 78 AKDLEANLASRSENPDFPAPLCAIVDFQ 105 (456)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~ 105 (456)
...+....+.+... ..|+||.|-.
T Consensus 82 ~~~~~~a~~~i~~~----~~dlvILDEi 105 (172)
T PF02572_consen 82 REGLEEAKEAISSG----EYDLVILDEI 105 (172)
T ss_dssp HHHHHHHHHHTT-T----T-SEEEEETH
T ss_pred HHHHHHHHHHHhCC----CCCEEEEcch
Confidence 44444444444333 8999999955
No 425
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=34.68 E-value=1.3e+02 Score=27.48 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=21.1
Q ss_pred CCcEEEecCCcc------cHHHHHHHcCCCeEEE
Q 046077 96 APLCAIVDFQVG------WTKAIFWKFNIPVVSL 123 (456)
Q Consensus 96 ~pD~vI~D~~~~------~~~~~A~~lgIP~v~~ 123 (456)
++|+||+..=.. -...+|+.+|.|++..
T Consensus 60 r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 60 RADVVITTGGLGPTHDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CCCEEEECCCcCCCccHhHHHHHHHHhCCCcccC
Confidence 789999763222 2346999999999986
No 426
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=34.63 E-value=99 Score=26.21 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=18.8
Q ss_pred cEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 98 LCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 98 D~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
-++|.|. ..-..+|+..|+++|..
T Consensus 161 ~v~vgD~--~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 161 CIGIEDA--QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred eEEEecC--HHHHHHHHHcCCEEEec
Confidence 4457886 47899999999998863
No 427
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.61 E-value=61 Score=32.36 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++++++. +||++|++. ....+|+.+|||++.+
T Consensus 360 ~e~~~~i~~~-------~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 360 TEVGDMIART-------EPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred HHHHHHHHhh-------CCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 5566777776 999999996 4556789999999876
No 428
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.52 E-value=88 Score=28.36 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCcEEE-ecCCc-ccHHHHHHHcCCCeEEEec
Q 046077 96 APLCAI-VDFQV-GWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 96 ~pD~vI-~D~~~-~~~~~~A~~lgIP~v~~~~ 125 (456)
-||+++ .|+.. --|..=|.++|||+|.+.-
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 499975 78765 4667788999999998743
No 429
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.48 E-value=4e+02 Score=27.87 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=60.3
Q ss_pred ceEEEe---cCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceE
Q 046077 274 SVLYVA---FGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGF 350 (456)
Q Consensus 274 ~vv~v~---~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~ 350 (456)
+.-|++ +||++.. .=..+-.++...+.+++.++|.+.-..-..++..... +.-+-+=++
T Consensus 409 p~~~~~~~~~gsmG~~---lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~---------------~~lpv~~vV 470 (586)
T PRK06276 409 PRSFISSGGLGTMGFG---FPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAE---------------YDIPVVICI 470 (586)
T ss_pred CCeEEcCCCccccccc---hhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHH---------------hCCCeEEEE
Confidence 345565 3555542 1222444555556788888887642111112211110 011222278
Q ss_pred EecCCchhHHHH--HHhCCCeeccCCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 351 LSHCGWNSTMEA--IVHGVPFLAWPIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 351 I~hgG~gt~~e~--l~~GvP~v~~P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
+.++|+|.+... +.++-+....-+ ....+.++.++ .+|+ |.++ -+.++|..++++.++
T Consensus 471 ~NN~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~~la~-a~G~~~~~v-------~~~~el~~al~~a~~ 531 (586)
T PRK06276 471 FDNRTLGMVYQWQNLYYGKRQSEVHL-GETPDFVKLAE-SYGVKADRV-------EKPDEIKEALKEAIK 531 (586)
T ss_pred EeCCchHHHHHHHHHHhCCCcccccC-CCCCCHHHHHH-HCCCeEEEE-------CCHHHHHHHHHHHHh
Confidence 899999977543 334443222211 12356677777 4465 3333 467999999998874
No 430
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=34.44 E-value=1.5e+02 Score=29.95 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=67.8
Q ss_pred cccCHHH---hhcccCcceEEe--cCCchhHH-HHHHhCCC----eeccCCccchhhHHHHHHHHhccEEEEecCCCCcc
Q 046077 334 AWAPQAL---ILNHISTGGFLS--HCGWNSTM-EAIVHGVP----FLAWPIRGDQYFNAKLVVNYIKVGLRVTDDLSETV 403 (456)
Q Consensus 334 ~~vp~~~---~l~h~~~~~~I~--hgG~gt~~-e~l~~GvP----~v~~P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~ 403 (456)
.-+|+.+ ++..+++ ++|| +-|+|.+. |-+++..| ++++- ++ |--.+ .|+-++.+++ .
T Consensus 338 ~~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLILS----ef--AGaA~-~L~~AllVNP-----~ 404 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLS----QF--AGAAN-ELTSALIVNP-----Y 404 (474)
T ss_pred CCCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEEe----cc--cchHH-HhCCCeEECC-----C
Confidence 3456654 3434553 3443 45888665 77777653 23321 11 11222 4455777854 6
Q ss_pred cHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q 046077 404 KKGDIAEGIERLMSD--EEMKTRAAILQVKFEQGFPASSVAALNAFSDFISRK 454 (456)
Q Consensus 404 ~~~~l~~~i~~~l~~--~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (456)
+.++++++|.+.|+- .+-+++.+++.+.+... ++....+.+++.|.+.
T Consensus 405 d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~---dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 405 DRDEVAAALDRALTMPLAERISRHAEMLDVIVKN---DINHWQECFISDLKQI 454 (474)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhC---CHHHHHHHHHHHHHHh
Confidence 889999999999974 46888888888888876 8888888888887643
No 431
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.33 E-value=61 Score=26.67 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=33.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+++|++.+.+.-||=.-.=-+++.|+..|.+|.+.+.-
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 45999999999999888888899999999999986533
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=34.31 E-value=99 Score=29.78 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=26.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNY-HTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh-~Vt~~~~~ 39 (456)
+.+|+++-.++.|- .+|+.|++.|. +++++=.+
T Consensus 24 ~~~VlVvG~GglGs-----~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGT-----ANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHH-----HHHHHHHHcCCCeEEEEeCC
Confidence 45899998888883 67899999998 88887654
No 433
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=34.29 E-value=82 Score=29.92 Aligned_cols=32 Identities=6% Similarity=0.099 Sum_probs=22.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+|+|+..+.++ +...+.|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 478888766554 55667888889998766543
No 434
>PRK05867 short chain dehydrogenase; Provisional
Probab=34.26 E-value=1.5e+02 Score=26.68 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
.+.++++.+ .|.+ -.++|+.|+++|++|.+...
T Consensus 9 ~k~vlVtGa-s~gI--G~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 9 GKRALITGA-STGI--GKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CCEEEEECC-CchH--HHHHHHHHHHCCCEEEEEcC
Confidence 356666644 3433 57889999999999988754
No 435
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=34.00 E-value=1.3e+02 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.6
Q ss_pred hHHHHHhcCCCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCCEEEEE
Q 046077 261 EEVIQWLDSKPRGSVLYVAFGSEVGP-TREEYRELAGALEESPGPFIWVV 309 (456)
Q Consensus 261 ~~~~~~l~~~~~~~vv~v~~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~ 309 (456)
++..+|+..++ ++++.|-.... +.+.+.++++.|.+.+...+.+-
T Consensus 34 ~d~~~~l~~gE----lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~ 79 (123)
T PF07905_consen 34 PDPSDWLRGGE----LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIK 79 (123)
T ss_pred CCHHHhCCCCe----EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678876654 56677777666 56678889999999888776553
No 436
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.85 E-value=61 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=20.0
Q ss_pred CCcEEEecCCccc--HHHHHHHcCCCeEEE
Q 046077 96 APLCAIVDFQVGW--TKAIFWKFNIPVVSL 123 (456)
Q Consensus 96 ~pD~vI~D~~~~~--~~~~A~~lgIP~v~~ 123 (456)
+||+||....... ...--+..|||++.+
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 9999997643322 444557899999886
No 437
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=33.82 E-value=1e+02 Score=26.54 Aligned_cols=104 Identities=11% Similarity=-0.051 Sum_probs=50.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCE--EEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYH--TTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~--Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|||+|+.+++. .-+-.+..+|.++++. +.++.+.+-....... .....+....+.... ..........
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~ 70 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSR-AIKNGIPAQVADEKN------FQPRSENDEE 70 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHH-HHHTTHHEEEHHGGG------SSSHHHHHHH
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccc-cccCCCCEEeccccC------CCchHhhhhH
Confidence 68888866655 3455567788899997 4443333211110000 000012222211111 1111234556
Q ss_pred HHHHHhhhcCCCCCCCCcEEEecCCc-ccHHHHHHHcCCCeEEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVDFQV-GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D~~~-~~~~~~A~~lgIP~v~~ 123 (456)
+.+++++. +||++|+-.+. .....+-+.....++-+
T Consensus 71 ~~~~l~~~-------~~Dl~v~~~~~~il~~~~l~~~~~~~iNi 107 (181)
T PF00551_consen 71 LLELLESL-------NPDLIVVAGYGRILPKEFLSIPPYGIINI 107 (181)
T ss_dssp HHHHHHHT-------T-SEEEESS-SS---HHHHHHSTTSEEEE
T ss_pred HHHHHHhh-------ccceeehhhhHHHhhhhhhhcccccEEEE
Confidence 77778877 99999876543 34445556666667765
No 438
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=33.78 E-value=1.5e+02 Score=29.99 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=51.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
++|++.. +-.-.+.|++.|.+-|-+|..+......+..+. ++.. . .. ... ...++
T Consensus 312 krvai~~-----~~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~------------~~~~--~---i~--~~D-~~~le 366 (455)
T PRK14476 312 KRVAIAA-----EPDLLLALGSFLAEMGAEIVAAVTTTKSPALED------------LPAE--E---VL--IGD-LEDLE 366 (455)
T ss_pred CEEEEEe-----CHHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh------------CCcC--c---EE--eCC-HHHHH
Confidence 4666554 335678899999999999988876542221111 1100 0 00 000 11333
Q ss_pred HHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 83 ANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
++++ +||++|++. ....+|+++|||++..
T Consensus 367 ~~~~---------~~dliig~s---~~~~~a~~~gip~~~~ 395 (455)
T PRK14476 367 ELAE---------GADLLITNS---HGRQAAERLGIPLLRV 395 (455)
T ss_pred Hhcc---------CCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 3332 689999995 4578999999999975
No 439
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=33.70 E-value=1.7e+02 Score=30.73 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=22.6
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 94 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~ 127 (612)
T PRK07789 94 RVGVCMATSGPGATNLVTPIADANMDSVPVVAIT 127 (612)
T ss_pred CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344888998876 6678999999999994
No 440
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=33.65 E-value=2.3e+02 Score=22.37 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=39.7
Q ss_pred HHHHHhCCCEEEEEcCCCCcCCCC-------CC----------C---CCCCCeEEEecCCCCCCCCCCchHHHHHHHHHH
Q 046077 23 CKNFSSRNYHTTLIIPSILVSAIP-------PS----------F---TQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLE 82 (456)
Q Consensus 23 A~~L~~~Gh~Vt~~~~~~~~~~~~-------~~----------~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (456)
...+.++|++|++++-........ .. . .....+.+..++++... ......+...+.
T Consensus 18 i~~~~~~g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~----~~~~~~~~~~l~ 93 (128)
T PF02585_consen 18 IAKLAEAGHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLP----GWSWEELVRDLE 93 (128)
T ss_dssp HHHHHHTT-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCT----CHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCcc----cccHHHHHHHHH
Confidence 346777899999887543211100 00 0 11113455556555443 245677888899
Q ss_pred HHHhhhcCCCCCCCCcEEEec
Q 046077 83 ANLASRSENPDFPAPLCAIVD 103 (456)
Q Consensus 83 ~ll~~~~~~~~~~~pD~vI~D 103 (456)
+++++. +||+|++-
T Consensus 94 ~~i~~~-------~p~~V~t~ 107 (128)
T PF02585_consen 94 DLIREF-------RPDVVFTP 107 (128)
T ss_dssp HHHHHH--------ESEEEEE
T ss_pred HHHHHc-------CCCEEEEC
Confidence 999999 99999854
No 441
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.64 E-value=51 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCEEEEEcCC
Q 046077 19 CIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 19 ~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367899999999999998433
No 442
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=33.53 E-value=73 Score=25.71 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=26.5
Q ss_pred CCceEEEEcCCC-ccCHHHHHHHHHHHHhCCCE-EEEEcCCC
Q 046077 1 MEREIFVVTGYW-QGHLQPCIELCKNFSSRNYH-TTLIIPSI 40 (456)
Q Consensus 1 m~~~il~~~~~~-~GHl~P~l~LA~~L~~~Gh~-Vt~~~~~~ 40 (456)
|+--|++-..|. .-...-.+.+|+.+.+.||+ |+++-..+
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 554455555553 33446678889999999998 47766553
No 443
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.42 E-value=2.7e+02 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.3
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeecc
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAW 372 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~ 372 (456)
..+++++|.|-| .+++|...++|+|++
T Consensus 67 ~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i 99 (574)
T PRK07979 67 EVGVVLVTSGPGATNAITGIATAYMDSIPLVVL 99 (574)
T ss_pred CceEEEECCCccHhhhHHHHHHHhhcCCCEEEE
Confidence 345888888876 467999999999999
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=33.32 E-value=44 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=27.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+|.|+-.+..|. .+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG~-----~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGT-----ALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCEEEEEECC
Confidence 5799999888886 6788999999999998764
No 445
>PRK05858 hypothetical protein; Provisional
Probab=33.30 E-value=2.8e+02 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.3
Q ss_pred ceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 348 GGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 348 ~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
++++.|+|-| .+.+|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3778888755 6779999999999984
No 446
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=33.22 E-value=40 Score=31.84 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+|||+++-.++.|=+ +|..|.+.||+|+++...
T Consensus 1 ~~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 1 MSMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CCceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 7899999999999975 466788899999999864
No 447
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=33.22 E-value=3.2e+02 Score=23.67 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=57.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhH
Q 046077 280 FGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNST 359 (456)
Q Consensus 280 ~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~ 359 (456)
+||++. ..-..+-.++...+.+++.++|.+.-..-..++..... ++-|-+=+++.++|+|.+
T Consensus 52 ~g~mG~---~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~eL~Ta~~---------------~~lpvi~vV~NN~~yg~~ 113 (196)
T cd02013 52 FGNCGY---ALPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVR---------------HKLPVTAVVFRNRQWGAE 113 (196)
T ss_pred Cccccc---HHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHH---------------hCCCeEEEEEECchhHHH
Confidence 466653 22233444566667888888887642111111111000 111333367799999987
Q ss_pred HHHH--HhCCCeeccCCccchhhHHHHHHHHhccE-EEEecCCCCcccHHHHHHHHHHHhC
Q 046077 360 MEAI--VHGVPFLAWPIRGDQYFNAKLVVNYIKVG-LRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 360 ~e~l--~~GvP~v~~P~~~dQ~~na~~~~~~~G~g-~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.... .++.......+ +-++.++.++ .+|+- .++ -+.++|..++++.+.
T Consensus 114 ~~~q~~~~~~~~~~~~~--~~~d~~~lA~-a~G~~~~~v-------~~~~el~~al~~a~~ 164 (196)
T cd02013 114 KKNQVDFYNNRFVGTEL--ESESFAKIAE-ACGAKGITV-------DKPEDVGPALQKAIA 164 (196)
T ss_pred HHHHHHHcCCCcccccC--CCCCHHHHHH-HCCCEEEEE-------CCHHHHHHHHHHHHh
Confidence 6432 23322222211 1256677777 55653 333 367889888888774
No 448
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=33.21 E-value=2.1e+02 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=26.0
Q ss_pred eEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 4 EIFVVTGY---WQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~---~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
++.|++.+ +.|-=.-.-+|++.|..+|++|+..=-+++.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence 55666666 4444455778999999999999999776654
No 449
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.94 E-value=1.9e+02 Score=24.25 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=26.6
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 9 TGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 9 ~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+-|+.|=-.=.+.||..|++.|++|.++-.+
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4457888888999999999999999998655
No 450
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.92 E-value=52 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 046077 17 QPCIELCKNFSSRNYHTTLI 36 (456)
Q Consensus 17 ~P~l~LA~~L~~~Gh~Vt~~ 36 (456)
.|.+.|++.|.++|.+|.+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~ 36 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVY 36 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHCCCEEEEE
Confidence 79999999999999998885
No 451
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=32.87 E-value=82 Score=24.98 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=29.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
..++++++++. +...+..++.|.+.|.+++++...
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 36888998888 467899999999999999997654
No 452
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=32.61 E-value=1.6e+02 Score=27.88 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEcCCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSR--NYHTTLIIPSI 40 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~--Gh~Vt~~~~~~ 40 (456)
+++|+++..++ ++ .+++.|.+. |++|..+...+
T Consensus 1 ~~~vLv~g~~~-~~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGR-RV-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCc-cH-----HHHHHHHHhccCCEEEEECCCC
Confidence 36788887643 33 778999888 59988876653
No 453
>PLN00016 RNA-binding protein; Provisional
Probab=32.54 E-value=48 Score=32.35 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCceEEEE--cCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVV--TGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~--~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+++|+++ -.|+.|.+= ..|++.|.++||+|+.++-.
T Consensus 51 ~~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 45677776 124555443 46789999999999998855
No 454
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=32.51 E-value=1.9e+02 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEc
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLII 37 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~ 37 (456)
|+.++++++.+ .| .=-..+|+.|+++|++|.+..
T Consensus 1 ~~~k~~lVtG~-s~--giG~~~a~~l~~~G~~vv~~~ 34 (246)
T PRK12938 1 MSQRIAYVTGG-MG--GIGTSICQRLHKDGFKVVAGC 34 (246)
T ss_pred CCCCEEEEECC-CC--hHHHHHHHHHHHcCCEEEEEc
Confidence 66677777744 44 335688999999999988754
No 455
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.43 E-value=53 Score=30.79 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=26.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
|+|.++-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 468888888877 4678899999999999986
No 456
>PRK06914 short chain dehydrogenase; Provisional
Probab=32.33 E-value=71 Score=29.37 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+.+.++++ ++.|.+ -..|++.|+++||+|..++..
T Consensus 1 ~~~k~~lIt-Gasg~i--G~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKKIAIVT-GASSGF--GLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCCEEEEE-CCCchH--HHHHHHHHHhCCCEEEEEeCC
Confidence 655555555 455544 567889999999999887643
No 457
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=32.29 E-value=3.6e+02 Score=26.42 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=51.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCC----CCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 3 REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPS----FTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 3 ~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
++|++. |+-.-.+.|++.|.+.|-+|..+........-.+. .... ..... ...-.
T Consensus 272 ~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~---------------~~~~~ 330 (398)
T PF00148_consen 272 KRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVI---------------IDPDP 330 (398)
T ss_dssp -EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEE---------------ESCBH
T ss_pred ceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEE---------------eCCCH
Confidence 355553 33466779999999999999998766432111100 0000 00000 00122
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+++++++. +||++|++.. ...+|+.++||++..
T Consensus 331 ~~~~~~l~~~-------~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 331 EEIEELLEEL-------KPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHHHH-------T-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred HHHHHHHHhc-------CCCEEEechh---hHHHHHHhCCCeEEE
Confidence 4577788877 9999999943 788899998888875
No 458
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=32.26 E-value=3.8e+02 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=31.0
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 6 FVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 6 l~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
++-+=|+-|=..-.+.||.+|+++|-.|+++=.++.+
T Consensus 6 f~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 6 FASSKGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred EecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3444468999999999999999999999999877643
No 459
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.26 E-value=4.6e+02 Score=25.08 Aligned_cols=28 Identities=11% Similarity=-0.119 Sum_probs=20.7
Q ss_pred CCcEEEecCCc----ccHHHHHHHcCCCeEEE
Q 046077 96 APLCAIVDFQV----GWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 96 ~pD~vI~D~~~----~~~~~~A~~lgIP~v~~ 123 (456)
++|.||..... .....-|...|||+|.+
T Consensus 80 ~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 80 GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe
Confidence 89999875433 24455678889999997
No 460
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=32.16 E-value=4.5e+02 Score=26.68 Aligned_cols=99 Identities=7% Similarity=-0.059 Sum_probs=53.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHH
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKD 80 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|-++||++--+-. .+.+++...+.|+++..+..........-. . -=.++.++..... ... -...
T Consensus 1 ~~kkiLi~~~ge~-----a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~---~-AD~~~~i~~~~~~-----~y~--d~~~ 64 (478)
T PRK08463 1 MIHKILIANRGEI-----AVRVIRACRDLHIKSVAIYTEPDRECLHVK---I-ADEAYRIGTDPIK-----GYL--DVKR 64 (478)
T ss_pred CccEEEEECCCHH-----HHHHHHHHHHcCCeEEEEECCCccCCcchh---h-cCEEEEcCCCchh-----ccc--CHHH
Confidence 6778998876644 578888888889997655544211111000 0 0122333221100 000 1234
Q ss_pred HHHHHhhhcCCCCCCCCcEEEec--CCc--ccHHHHHHHcCCCeEE
Q 046077 81 LEANLASRSENPDFPAPLCAIVD--FQV--GWTKAIFWKFNIPVVS 122 (456)
Q Consensus 81 ~~~ll~~~~~~~~~~~pD~vI~D--~~~--~~~~~~A~~lgIP~v~ 122 (456)
+.++.++. ++|.|+.- +.+ ......++.+|++++.
T Consensus 65 i~~~a~~~-------~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iG 103 (478)
T PRK08463 65 IVEIAKAC-------GADAIHPGYGFLSENYEFAKAVEDAGIIFIG 103 (478)
T ss_pred HHHHHHHh-------CCCEEEECCCccccCHHHHHHHHHCCCceec
Confidence 55555655 89999853 222 2245667889998874
No 461
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=32.04 E-value=3.9e+02 Score=24.40 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred eEEEec-CCCCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEe
Q 046077 275 VLYVAF-GSEVGPTREEYRELAGALEE-SPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLS 352 (456)
Q Consensus 275 vv~v~~-GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~ 352 (456)
+..++. |.++. .+++.+.. .+..++.++..... ..... ...++. .+-+..+++. .+|++|.
T Consensus 4 V~IiG~~G~mG~-------~i~~~l~~~~~~elvav~d~~~~-----~~~~~-~~~~i~--~~~dl~~ll~--~~DvVid 66 (257)
T PRK00048 4 VAVAGASGRMGR-------ELIEAVEAAEDLELVAAVDRPGS-----PLVGQ-GALGVA--ITDDLEAVLA--DADVLID 66 (257)
T ss_pred EEEECCCCHHHH-------HHHHHHHhCCCCEEEEEEecCCc-----ccccc-CCCCcc--ccCCHHHhcc--CCCEEEE
Confidence 666665 76652 24444443 35677766643321 11000 111222 2344555664 4456662
Q ss_pred --c--CCchhHHHHHHhCCCeeccCCccc--hhhHHHHHHHHhccEEEEec
Q 046077 353 --H--CGWNSTMEAIVHGVPFLAWPIRGD--QYFNAKLVVNYIKVGLRVTD 397 (456)
Q Consensus 353 --h--gG~gt~~e~l~~GvP~v~~P~~~d--Q~~na~~~~~~~G~g~~~~~ 397 (456)
+ ...-.+..++.+|+|+|+-+.... |...-..+. + ++++.+..
T Consensus 67 ~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 67 FTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 2 223456678999999999886533 322223333 3 77777754
No 462
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=31.93 E-value=80 Score=29.06 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|.+-|.+.-=|+.|-..=.+.||..|+++|++|.++=.+
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 666677776779999999999999999999999998544
No 463
>PRK13054 lipid kinase; Reviewed
Probab=31.86 E-value=2.5e+02 Score=26.35 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEe
Q 046077 273 GSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLS 352 (456)
Q Consensus 273 ~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~ 352 (456)
+.+++|.-|... ..+.+..++..|.+.+..+.+....... +......-......+++|.
T Consensus 4 ~~~~~i~N~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~~-------------------~a~~~a~~~~~~~~d~vvv 62 (300)
T PRK13054 4 PKSLLILNGKSA--GNEELREAVGLLREEGHTLHVRVTWEKG-------------------DAARYVEEALALGVATVIA 62 (300)
T ss_pred ceEEEEECCCcc--chHHHHHHHHHHHHcCCEEEEEEecCCC-------------------cHHHHHHHHHHcCCCEEEE
Q ss_pred cCCchhHHHHHHh--------CCCeeccCCcc
Q 046077 353 HCGWNSTMEAIVH--------GVPFLAWPIRG 376 (456)
Q Consensus 353 hgG~gt~~e~l~~--------GvP~v~~P~~~ 376 (456)
-||=||+.|++.. .+|+-++|...
T Consensus 63 ~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GT 94 (300)
T PRK13054 63 GGGDGTINEVATALAQLEGDARPALGILPLGT 94 (300)
T ss_pred ECCccHHHHHHHHHHhhccCCCCcEEEEeCCc
No 464
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=31.81 E-value=2.1e+02 Score=26.63 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHHh--
Q 046077 288 REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIVH-- 365 (456)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~~-- 365 (456)
.+...++.+.|++.+..+.+...... ...... +. .. .. ...+++|.-||=||+.|++..
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~-----~~~~~~-----------~~-~~-~~-~~~d~ivv~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEK-----GDAARY-----------VE-EA-RK-FGVDTVIAGGGDGTINEVVNALI 78 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-----ccHHHH-----------HH-HH-Hh-cCCCEEEEECCCChHHHHHHHHh
Confidence 45566677888888877654433221 011110 10 01 11 235699999999999997653
Q ss_pred ---CCCee-ccCC
Q 046077 366 ---GVPFL-AWPI 374 (456)
Q Consensus 366 ---GvP~v-~~P~ 374 (456)
..|.+ ++|.
T Consensus 79 ~~~~~~~lgiiP~ 91 (293)
T TIGR00147 79 QLDDIPALGILPL 91 (293)
T ss_pred cCCCCCcEEEEcC
Confidence 34444 5896
No 465
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=31.78 E-value=3.2e+02 Score=28.76 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEec--------ccCHHHhhcccCcceEEec
Q 046077 282 SEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHA--------WAPQALILNHISTGGFLSH 353 (456)
Q Consensus 282 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~vp~~~~l~h~~~~~~I~h 353 (456)
+........-+.+++.|++.|++.++-+.++....+-+.+.+.....+++++. +.-...-...-..+++++|
T Consensus 13 ~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t 92 (616)
T PRK07418 13 TVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGT 92 (616)
T ss_pred ccCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEEC
Q ss_pred CCch------hHHHHHHhCCCeecc-------------CCccchhhHHHHHHHHhccEEEEecCCCCcccHHHHHHHHHH
Q 046077 354 CGWN------STMEAIVHGVPFLAW-------------PIRGDQYFNAKLVVNYIKVGLRVTDDLSETVKKGDIAEGIER 414 (456)
Q Consensus 354 gG~g------t~~e~l~~GvP~v~~-------------P~~~dQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 414 (456)
.|-| .+++|...++|+|++ -...||....+-+. .....+ .+++++.+.|++
T Consensus 93 ~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vt---k~~~~v-------~~~~~i~~~l~~ 162 (616)
T PRK07418 93 SGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIV---KHSYVV-------RDPSDMARIVAE 162 (616)
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcc---eeEEEe-------CCHHHHHHHHHH
Q ss_pred Hh
Q 046077 415 LM 416 (456)
Q Consensus 415 ~l 416 (456)
.+
T Consensus 163 A~ 164 (616)
T PRK07418 163 AF 164 (616)
T ss_pred HH
No 466
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=31.77 E-value=2.4e+02 Score=29.36 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.0
Q ss_pred cceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 347 TGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 347 ~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34888888865 6679999999999983
No 467
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=31.64 E-value=7.6 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.1
Q ss_pred CchhHHHHHHhCCCeecc
Q 046077 355 GWNSTMEAIVHGVPFLAW 372 (456)
Q Consensus 355 G~gt~~e~l~~GvP~v~~ 372 (456)
|.|++...|+.|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678899999999887763
No 468
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.51 E-value=5.2e+02 Score=27.04 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHH--hCCCe
Q 046077 292 RELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV--HGVPF 369 (456)
Q Consensus 292 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~--~GvP~ 369 (456)
..+-.++...+.+++.++|.+.-..-..++..... +..|-+=+++.++|+|.+..... .+.+.
T Consensus 445 aaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r---------------~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 445 YAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQ---------------YDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred HHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH---------------cCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 33555666667888888887642111112211110 11123337888999988765432 22221
Q ss_pred eccCCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 370 LAWPIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 370 v~~P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
... +....++.++.++ .+|+ |.++ -+.++|.+++++.+.
T Consensus 510 ~~~-~~~~~~d~~~iA~-a~G~~~~~v-------~~~~eL~~al~~a~~ 549 (587)
T PRK06965 510 SHS-YMDALPDFVKLAE-AYGHVGMRI-------EKTSDVEPALREALR 549 (587)
T ss_pred ccc-CCCCCCCHHHHHH-HCCCEEEEE-------CCHHHHHHHHHHHHh
Confidence 110 1101256777777 4565 3333 368899999988874
No 469
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=31.30 E-value=5.3e+02 Score=26.88 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHH-HHHHhCCCeecc
Q 046077 294 LAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTM-EAIVHGVPFLAW 372 (456)
Q Consensus 294 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~-e~l~~GvP~v~~ 372 (456)
+-.++...+.++|.++|.+.-..-..++.... -+..+-+=+++.++|+|.+. +....|.+....
T Consensus 418 iGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~---------------~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~ 482 (578)
T PRK06546 418 IGAQLADPGRQVISMSGDGGLSMLLGELLTVK---------------LYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGT 482 (578)
T ss_pred HHHHHhCCCCcEEEEEcCchHhhhHHHHHHHH---------------HhCCCeEEEEEECCccccHHHHHHhcCCCcccc
Confidence 44455566788898888764211111111100 01113333788999999874 222334332111
Q ss_pred CCccchhhHHHHHHHHhcc-EEEEecCCCCcccHHHHHHHHHHHhC
Q 046077 373 PIRGDQYFNAKLVVNYIKV-GLRVTDDLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 373 P~~~dQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~l~~~i~~~l~ 417 (456)
.....+.++.++ .+|+ +..+ -+.++|.+++++.++
T Consensus 483 --~~~~~df~~lA~-a~G~~~~~v-------~~~~el~~al~~a~~ 518 (578)
T PRK06546 483 --DHPPVDYAAIAA-ALGIHAVRV-------EDPKDVRGALREAFA 518 (578)
T ss_pred --cCCCCCHHHHHH-HCCCeeEEe-------CCHHHHHHHHHHHHh
Confidence 123466777777 5565 3333 378999999999874
No 470
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=31.26 E-value=1.5e+02 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=22.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
+.++++.++ |- =-.++|++|+++|++|.....
T Consensus 11 k~~lItG~~-~g--IG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 11 KVAVVTGCD-TG--LGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CEEEEECCC-ch--HHHHHHHHHHHCCCEEEEecC
Confidence 556666443 42 356789999999999987643
No 471
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.14 E-value=98 Score=30.52 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCcEEEecCCccc----------HHHHHHHcCCCeEEE
Q 046077 74 SQQAAKDLEANLASRSENPDFPAPLCAIVDFQVGW----------TKAIFWKFNIPVVSL 123 (456)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~----------~~~~A~~lgIP~v~~ 123 (456)
.+.....+.+++++. +||++|+.+.+.. +..+.+++|||.++-
T Consensus 61 ~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 445566777777777 9999998865422 123567799999874
No 472
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.04 E-value=2.7e+02 Score=25.78 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.4
Q ss_pred CC-ceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 ME-REIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~-~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+ ++|.|+-.+..|. .+|..|+++||+|+++-..
T Consensus 1 ~~~~kI~VIG~G~mG~-----~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 1 MGIQKIGVIGAGTMGN-----GIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred CCccEEEEEccCHHHH-----HHHHHHHHCCCceEEEeCC
Confidence 65 4788887776664 7888899999999998543
No 473
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.91 E-value=99 Score=30.46 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=30.5
Q ss_pred eEEecCCchhHHHHHHhCCCeeccCC--ccchhhHHHHHHHHhccEEEE
Q 046077 349 GFLSHCGWNSTMEAIVHGVPFLAWPI--RGDQYFNAKLVVNYIKVGLRV 395 (456)
Q Consensus 349 ~~I~hgG~gt~~e~l~~GvP~v~~P~--~~dQ~~na~~~~~~~G~g~~~ 395 (456)
..+|+||+--+-|-=++|+|.|.+-. ..-.-.=|.|+. . ++++--
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanriv-p-~~~ip~ 393 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIV-P-TIAIPH 393 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCcccee-c-ccCcCC
Confidence 56788888888888889999998853 223333366676 3 555544
No 474
>PRK06180 short chain dehydrogenase; Provisional
Probab=30.90 E-value=76 Score=29.22 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=24.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 2 EREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 2 ~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.+.++++ ++.|.+ -..|++.|+++||+|..+...
T Consensus 3 ~~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 3 SMKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 34555555 555654 577899999999999987643
No 475
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.87 E-value=4.3e+02 Score=26.03 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH------hhcc
Q 046077 271 PRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL------ILNH 344 (456)
Q Consensus 271 ~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~------~l~h 344 (456)
..+++++...||.. .-....+++.|.+.+..+-+++.......+.....+......+...-|.+... +...
T Consensus 2 ~~k~IllgiTGSia---a~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~~~~~v~~~~~~~~~~~~~hi~l~~~ 78 (390)
T TIGR00521 2 ENKKILLGVTGGIA---AYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVTELWGPIEHNALHIDLAKW 78 (390)
T ss_pred CCCEEEEEEeCHHH---HHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHhhCCceeehhccccccccchhhcccc
Q ss_pred cCcceEEecCCchhHH-------------HHHHhCCCeeccCCccchhh-------HHHHHHHHhccEEEEec-------
Q 046077 345 ISTGGFLSHCGWNSTM-------------EAIVHGVPFLAWPIRGDQYF-------NAKLVVNYIKVGLRVTD------- 397 (456)
Q Consensus 345 ~~~~~~I~hgG~gt~~-------------e~l~~GvP~v~~P~~~dQ~~-------na~~~~~~~G~g~~~~~------- 397 (456)
+++ .+|.-|=+||+. .++.+-+|++++|--.+.+. |..++. ..|+-+.-..
T Consensus 79 aD~-~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~-~~G~~vv~P~~g~~ac~ 156 (390)
T TIGR00521 79 ADL-ILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLK-DDGYIFIEPDSGLLACG 156 (390)
T ss_pred cCE-EEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHH-HCCcEEECCCCcccccc
Q ss_pred ----CCCCcccHHHHHHHHHHHhC
Q 046077 398 ----DLSETVKKGDIAEGIERLMS 417 (456)
Q Consensus 398 ----~~~~~~~~~~l~~~i~~~l~ 417 (456)
. +-.+.++|...+.+.+.
T Consensus 157 ~~g~g--~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 157 DEGKG--RLAEPETIVKAAEREFS 178 (390)
T ss_pred cccCC--CCCCHHHHHHHHHHHHh
No 476
>PRK07586 hypothetical protein; Validated
Probab=30.80 E-value=1.8e+02 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=20.3
Q ss_pred ceEEecCCchhH------HHHHHhCCCeeccC
Q 046077 348 GGFLSHCGWNST------MEAIVHGVPFLAWP 373 (456)
Q Consensus 348 ~~~I~hgG~gt~------~e~l~~GvP~v~~P 373 (456)
++++.|.|-|.+ .+|...++|+|++.
T Consensus 66 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 66 AATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 477888886644 37899999999984
No 477
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=30.76 E-value=58 Score=31.67 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
|+++|+++-.+-.| +..|-.|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 56789999988888 899999999999999986553
No 478
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=30.71 E-value=98 Score=26.16 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSIL 41 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~ 41 (456)
|.+=+.|+-+-..|=..=+-.|.+.|.++|++|..+=+.-.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 55556677777888888888999999999999999865543
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.63 E-value=1.4e+02 Score=26.80 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEcCCCC
Q 046077 5 IFVVTGYWQGHLQPCIELCKNFSSR-NYHTTLIIPSIL 41 (456)
Q Consensus 5 il~~~~~~~GHl~P~l~LA~~L~~~-Gh~Vt~~~~~~~ 41 (456)
+++...|+.|=-.=.+.++..++.. |+.|.|++.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 4666677888888888888888877 999999997763
No 480
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.48 E-value=1.5e+02 Score=29.59 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEE
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 123 (456)
..+.+++++. +||++|... ..+....|.++|||++.+
T Consensus 363 ~e~~~~l~~~-------~pDl~i~~~-~~~~~~~~~~~gip~~~~ 399 (426)
T cd01972 363 YQFYNLLKRV-------KPDFIIFRH-GGLFPDATVYLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHh-------CCCEEEEcC-CCccHHHHHhcCCCEEec
Confidence 4567778877 999999753 235566678899999875
No 481
>PLN02293 adenine phosphoribosyltransferase
Probab=30.25 E-value=1.6e+02 Score=25.58 Aligned_cols=59 Identities=8% Similarity=-0.106 Sum_probs=35.6
Q ss_pred CeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCCCcEEEec-CC-cccHHHHHHHcCCCeEEE
Q 046077 54 RTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPAPLCAIVD-FQ-VGWTKAIFWKFNIPVVSL 123 (456)
Q Consensus 54 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D-~~-~~~~~~~A~~lgIP~v~~ 123 (456)
++.|..+..-.. ....++.+...+.+.++.. ++|+|++= .- ...+..+|+.+|+|++..
T Consensus 31 gi~f~D~~~l~~----~p~~~~~~~~~l~~~~~~~-------~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 31 GIMFQDITTLLL----DPKAFKDTIDLFVERYRDM-------GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CcEEEECHHHhh----CHHHHHHHHHHHHHHHhhc-------CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 666666532221 1233444444454444433 78999844 22 357789999999998864
No 482
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.08 E-value=4.4e+02 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=31.5
Q ss_pred ceEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcC
Q 046077 3 REIFVVT-GYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVS 43 (456)
Q Consensus 3 ~~il~~~-~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~ 43 (456)
+||++++ =|+.|=..=.-++|-.|++.|.+|.++++++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 4554444 4688988888889999999999988888776443
No 483
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.00 E-value=1.6e+02 Score=27.70 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHH---
Q 046077 288 REEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV--- 364 (456)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~--- 364 (456)
.+.+.++.+.|++.+..+.+...... ...... +.+ ... ...+++|.-||=||+.|++.
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~-----~~~~~~-----------a~~-~~~--~~~d~vvv~GGDGTi~evv~~l~ 85 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDA-----HDARHL-----------VAA-ALA--KGTDALVVVGGDGVISNALQVLA 85 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCH-----HHHHHH-----------HHH-HHh--cCCCEEEEECCchHHHHHhHHhc
Confidence 45666778888888877654433211 111111 000 111 33468999999999999873
Q ss_pred -hCCCeeccCC
Q 046077 365 -HGVPFLAWPI 374 (456)
Q Consensus 365 -~GvP~v~~P~ 374 (456)
.++|+-++|.
T Consensus 86 ~~~~~lgiiP~ 96 (306)
T PRK11914 86 GTDIPLGIIPA 96 (306)
T ss_pred cCCCcEEEEeC
Confidence 4789999996
No 484
>PRK06182 short chain dehydrogenase; Validated
Probab=29.99 E-value=85 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIP 38 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~ 38 (456)
|+.+.++++. +.|.+ -.++|++|.++||+|....-
T Consensus 1 ~~~k~vlItG-asggi--G~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 1 MQKKVALVTG-ASSGI--GKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CCCCEEEEEC-CCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 6666666664 44544 56799999999999988654
No 485
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.98 E-value=1.2e+02 Score=28.77 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHHhhcccCcceEEecCCchhHHHHHH--
Q 046077 287 TREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQALILNHISTGGFLSHCGWNSTMEAIV-- 364 (456)
Q Consensus 287 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~~l~h~~~~~~I~hgG~gt~~e~l~-- 364 (456)
+.+...++-+++.+..++.||.+.++.. -.++.++++.+.+-+||. .||-.+-..++.-+++
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g--------------~~rlL~~lD~~~i~~~PK--~fiGySDiTaL~~al~~~ 114 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGDD--------------SNELLPYLDYELIKKNPK--IFIGYSDITALHLAIYKK 114 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCcccC--------------HhhhhhhcCHHHHhhCCC--EEEeccHHHHHHHHHHHh
Confidence 4677777999999999999999987642 133445566565555665 6666666666666653
Q ss_pred hCCCeeccCC
Q 046077 365 HGVPFLAWPI 374 (456)
Q Consensus 365 ~GvP~v~~P~ 374 (456)
+|.+.+--|.
T Consensus 115 ~g~~t~hGp~ 124 (308)
T cd07062 115 TGLVTYYGPN 124 (308)
T ss_pred cCCeEEECcc
Confidence 3555555554
No 486
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.97 E-value=2.2e+02 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.6
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 67 ~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 345888888866 5679999999999883
No 487
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=29.96 E-value=1.4e+02 Score=22.59 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhC
Q 046077 275 VLYVAFGSEVGPTREEYRELAGALEES 301 (456)
Q Consensus 275 vv~v~~GS~~~~~~~~~~~~~~al~~~ 301 (456)
+|+|+.||.....+..+..+++.+++.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~ 28 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRER 28 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 789999998765567777888888654
No 488
>PRK06398 aldose dehydrogenase; Validated
Probab=29.90 E-value=3.9e+02 Score=24.09 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=22.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
+.++++.++ |.+ -.++|+.|.++||+|.+....
T Consensus 7 k~vlItGas-~gI--G~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 7 KVAIVTGGS-QGI--GKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCeEEEEeCC
Confidence 556666443 333 356899999999999987543
No 489
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.82 E-value=2.1e+02 Score=24.36 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCEEEEEcCCC-CcCCCCCCC-CCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 046077 21 ELCKNFSSRNYHTTLIIPSI-LVSAIPPSF-TQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPAPL 98 (456)
Q Consensus 21 ~LA~~L~~~Gh~Vt~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD 98 (456)
.|.+...++|..|.+++..+ ..+.+.... ...|++++.....+.. .....+.+.+.+.+. +||
T Consensus 39 ~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--------~~~~~~~i~~~I~~~-------~pd 103 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--------DEEEEEAIINRINAS-------GPD 103 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--------ChhhHHHHHHHHHHc-------CCC
Confidence 34444456789999998774 222222211 2456888877655543 111233344444444 999
Q ss_pred EEEecCCc----ccHHHHHHHcCCCeEEEechhHH
Q 046077 99 CAIVDFQV----GWTKAIFWKFNIPVVSLFTFGAC 129 (456)
Q Consensus 99 ~vI~D~~~----~~~~~~A~~lgIP~v~~~~~~~~ 129 (456)
+|+.-.=+ .|.....+.++.+ +.+....++
T Consensus 104 iv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 104 IVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 99866433 4777888888888 444444443
No 490
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.77 E-value=1.3e+02 Score=28.50 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=53.2
Q ss_pred eEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEE-cCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHH
Q 046077 4 EIFVVTGYWQG----HLQPCIELCKNFSSRNYHTTLI-IPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAA 78 (456)
Q Consensus 4 ~il~~~~~~~G----Hl~P~l~LA~~L~~~Gh~Vt~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
.|++.|.++.- -..-+.+|++.|.++|+++.+. +++.-.+..+......+...+ . -+...
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l-------------~--g~~sL 245 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVV-------------L--PKMSL 245 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCee-------------c--CCCCH
Confidence 45566544321 1235778999998889998876 433211111111000011100 0 01123
Q ss_pred HHHHHHHhhhcCCCCCCCCcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 79 KDLEANLASRSENPDFPAPLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
.++..+++ +.|++|+.-. +...+|..+|+|.+.++.
T Consensus 246 ~el~ali~---------~a~l~I~~DS--gp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 246 AEVAALLA---------GADAVVGVDT--GLTHLAAALDKPTVTLYG 281 (319)
T ss_pred HHHHHHHH---------cCCEEEeCCC--hHHHHHHHcCCCEEEEEC
Confidence 34455555 6699996533 778999999999998754
No 491
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=29.69 E-value=2.5e+02 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=22.1
Q ss_pred CcceEEecCCch------hHHHHHHhCCCeeccC
Q 046077 346 STGGFLSHCGWN------STMEAIVHGVPFLAWP 373 (456)
Q Consensus 346 ~~~~~I~hgG~g------t~~e~l~~GvP~v~~P 373 (456)
..+++++|.|-| .+++|...++|+|++.
T Consensus 75 k~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~ 108 (569)
T PRK08327 75 KPQAVMVHVDVGTANALGGVHNAARSRIPVLVFA 108 (569)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 345788888855 6679999999999883
No 492
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.58 E-value=3e+02 Score=25.89 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=51.4
Q ss_pred hHHHHHhcCCCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCcCcchhhhhhCCCCeEEecccCHHH
Q 046077 261 EEVIQWLDSKPRGSVLYVAFGSEVGPTREEYRELAGALEESPGPFIWVVQPGSEEYMPHDLDNRVSNRGLIIHAWAPQAL 340 (456)
Q Consensus 261 ~~~~~~l~~~~~~~vv~v~~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vp~~~ 340 (456)
.+++.+.....-+.+-+-........+...+..+.++++++|+.+++-+|.+... -.... . ......=.+-
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~---~~~~~-----~-~~~p~~~~~v 186 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG---AGLEK-----G-HSDPLYLDDV 186 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC---ccccc-----C-CCCchHHHHH
Confidence 3555665543322232223333334445567889999999999999987764320 00000 0 0000111333
Q ss_pred hhcccCcceEEecCC--chhHHHH
Q 046077 341 ILNHISTGGFLSHCG--WNSTMEA 362 (456)
Q Consensus 341 ~l~h~~~~~~I~hgG--~gt~~e~ 362 (456)
..++|...+++.|+| ..-..|+
T Consensus 187 a~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 187 ARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred HHHCCCCcEEEEecCCCCchhHHH
Confidence 466899999999999 4444444
No 493
>PLN02735 carbamoyl-phosphate synthase
Probab=29.57 E-value=2e+02 Score=32.82 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred ceEEEEcCCC--ccCH----HHHHHHHHHHHhCCCEEEEEcCCC
Q 046077 3 REIFVVTGYW--QGHL----QPCIELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 3 ~~il~~~~~~--~GHl----~P~l~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
++|+++-.+. .|+. +....++++|.+.|++|..+.+.+
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 4788888775 3433 557889999999999999997664
No 494
>PRK13059 putative lipid kinase; Reviewed
Probab=29.49 E-value=2e+02 Score=26.90 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.1
Q ss_pred CcceEEecCCchhHHHHH---H---hCCCeeccCC
Q 046077 346 STGGFLSHCGWNSTMEAI---V---HGVPFLAWPI 374 (456)
Q Consensus 346 ~~~~~I~hgG~gt~~e~l---~---~GvP~v~~P~ 374 (456)
..+.+|.-||=||+.|++ . .++|+-++|.
T Consensus 56 ~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 446999999999998874 2 3588999996
No 495
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.46 E-value=2.4e+02 Score=25.72 Aligned_cols=39 Identities=13% Similarity=-0.075 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCC
Q 046077 1 MEREIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPS 39 (456)
Q Consensus 1 m~~~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~ 39 (456)
|+.=.+.-+=|+.|=..=.-.||..|++.|++|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 333334445568999999999999999999999998544
No 496
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.45 E-value=5.6e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=30.7
Q ss_pred eEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEcCCCCc
Q 046077 4 EIFVVTGY---WQGHLQPCIELCKNFSSRNYHTTLIIPSILV 42 (456)
Q Consensus 4 ~il~~~~~---~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~ 42 (456)
+..|+|.+ +.|-=.-.-+||..|..||++||..=-+++.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYl 43 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYL 43 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccce
Confidence 46677766 5566677889999999999999998766654
No 497
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=29.27 E-value=53 Score=34.09 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCceEEEEcCC-C------ccCHHHH-H---HHHHHHHhCCCEEEEEcCCC
Q 046077 1 MEREIFVVTGY-W------QGHLQPC-I---ELCKNFSSRNYHTTLIIPSI 40 (456)
Q Consensus 1 m~~~il~~~~~-~------~GHl~P~-l---~LA~~L~~~Gh~Vt~~~~~~ 40 (456)
|++++++.+.| . .||+... + .+++-+..+|++|.+++.-.
T Consensus 1 ~~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d 51 (556)
T PRK12268 1 MMMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSD 51 (556)
T ss_pred CCCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCC
Confidence 66666555554 3 3999977 5 56777778899999998654
No 498
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.21 E-value=65 Score=27.82 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCC
Q 046077 4 EIFVVTGYWQGHLQPCIELCKNFSSRNYHTTLIIPSILVSAIP 46 (456)
Q Consensus 4 ~il~~~~~~~GHl~P~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 46 (456)
+|++.-.|+-|- +-...|.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555566665 445899999999999999999987665543
No 499
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=28.93 E-value=90 Score=19.85 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHhCC-HHHHHHHHHH
Q 046077 404 KKGDIAEGIERLMSD-EEMKTRAAIL 428 (456)
Q Consensus 404 ~~~~l~~~i~~~l~~-~~~~~~a~~l 428 (456)
++++|.+||..+.++ -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 468899999999877 4676666544
No 500
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.92 E-value=92 Score=29.54 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCEEEEE-cCCCCcCCCCCCCCCCCCeEEEecCCCCCCCCCCchHHHHHHHHHHHHHhhhcCCCCCCC
Q 046077 18 PCIELCKNFSSRNYHTTLI-IPSILVSAIPPSFTQYPRTRTTQITSSGRPMPPSDPLSQQAAKDLEANLASRSENPDFPA 96 (456)
Q Consensus 18 P~l~LA~~L~~~Gh~Vt~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 96 (456)
-+.+|++.|.++|.+|.+. +++.=.+..+......+.+.+ . -......+-.+++ +
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l-------------~--g~~sL~elaali~---------~ 253 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEV-------------L--PKLSLEQVARVLA---------G 253 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCccee-------------c--CCCCHHHHHHHHH---------h
Confidence 3889999999889998875 443211111110000001100 0 0012334445555 6
Q ss_pred CcEEEecCCcccHHHHHHHcCCCeEEEec
Q 046077 97 PLCAIVDFQVGWTKAIFWKFNIPVVSLFT 125 (456)
Q Consensus 97 pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 125 (456)
.|++|+.- .+...+|..+|+|.+.++.
T Consensus 254 a~l~I~nD--SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 254 AKAVVSVD--TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred CCEEEecC--CcHHHHHHHhCCCEEEEEC
Confidence 69999653 3788999999999999754
Done!