BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046085
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE
QKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTM
SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGT
LKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWELESSDAESTS

High Scoring Gene Products

Symbol, full name Information P value
AT4G12240 protein from Arabidopsis thaliana 2.9e-44
AT5G52010 protein from Arabidopsis thaliana 2.1e-19

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046085
        (230 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139119 - symbol:AT4G12240 "AT4G12240" species...   442  2.9e-44   2
TAIR|locus:2173038 - symbol:AT5G52010 "AT5G52010" species...   235  2.1e-19   1


>TAIR|locus:2139119 [details] [associations]
            symbol:AT4G12240 "AT4G12240" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR007087 InterPro:IPR015880 PROSITE:PS00028
            PROSITE:PS50157 SMART:SM00355 GO:GO:0005739 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700 EMBL:AL161533
            EMBL:AL080318 UniGene:At.48849 UniGene:At.66589 InterPro:IPR021139
            Pfam:PF01936 HOGENOM:HOG000240853 EMBL:BT005409 EMBL:AK118936
            IPI:IPI00531382 PIR:T48134 RefSeq:NP_192961.1
            ProteinModelPortal:Q9STI7 SMR:Q9STI7 EnsemblPlants:AT4G12240.1
            GeneID:826832 KEGG:ath:AT4G12240 TAIR:At4g12240 eggNOG:NOG321752
            InParanoid:Q9STI7 OMA:KRAGFWV PhylomeDB:Q9STI7
            ProtClustDB:CLSN2685569 Genevestigator:Q9STI7 Uniprot:Q9STI7
        Length = 364

 Score = 442 (160.7 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 94/216 (43%), Positives = 136/216 (62%)

Query:     3 LELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK 62
             LE++E  ++K ++L N+LE KG+++P EPY   +   D R Y N+KL+NHFKQIH+ E +
Sbjct:    90 LEVRE--QRKDRKLLNKLENKGLVKPPEPYFCGVC--DRRFYTNEKLINHFKQIHETENQ 145

Query:    63 KRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSD 122
             KR+ QIES+KG  R  LV  YSM++E YK A++  LTPK GY L  +LKR  FWV+ +SD
Sbjct:   146 KRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSD 205

Query:   123 KLQAADVLLRNYMVDMMDKRRFGCLXXXXXXXXXXEVLQEATLRCLKTGVAGYMNDGTLK 182
             K  AAD  L+ ++V++MDKR   C+           +L EA  RCL+T V G  N+G LK
Sbjct:   206 KPDAADKALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALK 265

Query:   183 RIAD-RLKWAY----NSEVEKKRLIGMI-DADCIQK 212
             R+AD    W       ++ E ++++G   D D ++K
Sbjct:   266 RVADVAYSWKEVTMGKAKKEVEKVVGKWKDRDVLKK 301

 Score = 41 (19.5 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 8/41 (19%), Positives = 20/41 (48%)

Query:   190 WAYNSEVEKKRLIGMIDADCIQKEDKDAWWELESSDAESTS 230
             W Y  + + +   G  + + ++  D   WW++++ D   +S
Sbjct:   321 WDYEFDYDDEIENGT-EVEPVEIGDGVDWWKIDTEDGVGSS 360


>TAIR|locus:2173038 [details] [associations]
            symbol:AT5G52010 "AT5G52010" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 EMBL:AB015478
            EMBL:AY039592 EMBL:AY129489 IPI:IPI00522595 RefSeq:NP_200014.1
            UniGene:At.9332 ProteinModelPortal:Q9FJ91 SMR:Q9FJ91 IntAct:Q9FJ91
            PRIDE:Q9FJ91 EnsemblPlants:AT5G52010.1 GeneID:835276
            KEGG:ath:AT5G52010 TAIR:At5g52010 HOGENOM:HOG000240853
            InParanoid:Q9FJ91 OMA:DNKPPRG PhylomeDB:Q9FJ91
            ProtClustDB:CLSN2687448 Genevestigator:Q9FJ91 Uniprot:Q9FJ91
        Length = 396

 Score = 235 (87.8 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 65/190 (34%), Positives = 100/190 (52%)

Query:     9 KEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQI 68
             +E++ +   + +E KG + P +PY+  +     +  N D L  HFKQ+H+RE++K++N++
Sbjct:   129 EERRERRNLDFMERKGEVTPIDPYICGVCGRKCKT-NLD-LKKHFKQLHERERQKKVNRM 186

Query:    69 ESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAAD 128
              S KGK R+     Y    E Y  A+++ LTPKVGY L  +L+R   +V+T+ DK QAAD
Sbjct:   187 RSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYVKTVEDKPQAAD 246

Query:   129 VLLRNYMVDMMDKRRFGCLXXXXXXXXXXEVLQEATLRCLKTGVAGYMNDGTLKRIADRL 188
               ++  +   M  R    L          ++L++A    L T V   M D  L R AD  
Sbjct:   247 WAVKRQIQHSMT-RGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDM-DRALGRHADL- 303

Query:   189 KWAYNSEVEK 198
              W   S VEK
Sbjct:   304 -WVPWSGVEK 312


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       220   0.00094  112 3  11 22  0.38    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.57u 0.09s 19.66t   Elapsed:  00:00:01
  Total cpu time:  19.57u 0.09s 19.66t   Elapsed:  00:00:01
  Start:  Mon May 20 15:33:14 2013   End:  Mon May 20 15:33:15 2013

Back to top