BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046085
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3I|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|B Chain B, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|C Chain C, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|D Chain D, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 167 CLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDAD 208
+ TG++ + DGT RIA R AY ++ L G+ID+D
Sbjct: 43 AVSTGISIRVPDGTYGRIAPRSGLAYKYGIDV--LAGVIDSD 82
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 264
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 264
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 246 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 286
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 222 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 262
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 228 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 268
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 227 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 267
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 227 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 267
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 224 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 264
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed
With The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|D Chain D, Crystal Structure Of The Hspbp1 Core Domain Complexed
With The Fragment Of Hsp70 Atpase Domain
Length = 191
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 GDLRLYNND---KLVNHFKQIHKREQKKRLNQIESAKGKMR 76
GD L D +LVNHF + KR+ KK ++Q + A ++R
Sbjct: 44 GDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,588
Number of Sequences: 62578
Number of extensions: 216072
Number of successful extensions: 568
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 19
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)