BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046085
         (230 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
            PE=3 SV=1
          Length = 2179

 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 37   VEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKA 96
            V G LRL  N + +NHF Q  K     +L          +  L   + ++   +++    
Sbjct: 1435 VRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLS---KAKLFSKFDLKSGFWQLGIHP 1491

Query: 97   TLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF 156
               PK G+ +     R + W + M   L+ A  L +  M+ +     F  LV++ D   F
Sbjct: 1492 NERPKTGFCIP---DRHFQW-KVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLF 1547

Query: 157  VEVLQE 162
             E L++
Sbjct: 1548 SETLED 1553


>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
            SV=1
          Length = 2180

 Score = 33.5 bits (75), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 37   VEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKA 96
            V G LRL  N + +NHF Q  K     +L          +  L   + ++   +++    
Sbjct: 1436 VRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLS---KAKLFSKFDLKSGFWQLGIHP 1492

Query: 97   TLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF 156
               PK G+ +     R + W + M   L+ A  L +  M+ +     F  LV++ D   F
Sbjct: 1493 NERPKTGFCIP---DRHFQW-KVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLF 1548

Query: 157  VEVLQE 162
             E L++
Sbjct: 1549 SETLED 1554


>sp|P75338|Y440_MYCPN Uncharacterized protein MPN_440 OS=Mycoplasma pneumoniae (strain
           ATCC 29342 / M129) GN=MPN_440 PE=3 SV=1
          Length = 726

 Score = 33.1 bits (74), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 60  EQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLK----RVW 114
           E+K +L        K+RE ++ N   +++T+    K TL P+  YS V+ L     +VW
Sbjct: 223 EEKSKLKTKTEDVNKIREKILNNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVW 281


>sp|O76332|TERT_OXYTR Telomerase reverse transcriptase OS=Oxytricha trifallax GN=TERT
           PE=3 SV=1
          Length = 1132

 Score = 30.8 bits (68), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 41  LRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTP 100
           +RL  +D L  + KQ+ K+E +        A GK+R    G+              T  P
Sbjct: 584 MRLSIDDLLKQNLKQVEKKEMRIFCESQNFAPGKLRLIPKGD--------------TFRP 629

Query: 101 KVGYSLVVKLKRVWFWVR-TMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD 153
            + ++  +  +   F  R T ++KLQ A ++L+N +   M K  FG  VF  DD
Sbjct: 630 IMTFNRKIPNQVGKFQSRMTTNNKLQTAHMMLKN-LKSKMFKHSFGFAVFNYDD 682


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,782,634
Number of Sequences: 539616
Number of extensions: 3093962
Number of successful extensions: 8726
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8722
Number of HSP's gapped (non-prelim): 17
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)