BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046086
(966 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPS 60
G S L IE S ++++ SE YA+S WCLDEL+ I++ + V+P+FYGV+P+
Sbjct: 49 GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPN 108
Query: 61 HVRWQTGIFGNLFSKLEERF-PEMRKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEV 119
HVRWQTG+ F K R PE +WR ALT A LSG S +SKL+++IA+E+
Sbjct: 109 HVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECK-HDYGQIVIPVFYGVDP 59
G EI +LL AI+ S I + I S YA S+WCL EL +I+ + D +I++P+FY VDP
Sbjct: 76 GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDP 135
Query: 60 SHVRWQTGIFGNLFSKLEERFP-EMRKRWRNALTEAANLSGF 100
S VR QTG + F K +F + + W++AL + +L G+
Sbjct: 136 SDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW 177
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 22/232 (9%)
Query: 546 VSLKLPGSNVEQLWDDVQNLVNIKE--IDLHGSKQLSKLPDLSQA-RNLERLKLDGCSSL 602
V+L+L + Q D L +++ ID G L +LPD Q LE L L + L
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTIDAAG---LXELPDTXQQFAGLETLTL-ARNPL 139
Query: 603 METHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHF 662
+SI LN+L L +R C L LP+ + S G +NL++
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASG-EHQGLVNLQS----------- 187
Query: 663 LDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYXXXXXXXXXXXXHIEISSCSNLKRFP 722
L L GI +P SI L L SL I N + L +++ C+ L+ +P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 723 EISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPEL 774
I R ++ +NL +P I L++L+ LD+ C L LP L
Sbjct: 247 PIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 528 FEW---HEFPLKTLNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD 584
EW P N+ +NL SLK+ S + L + +L ++E+DL G L P
Sbjct: 190 LEWTGIRSLPASIANL--QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 585 LSQAR-NLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTIC 634
+ R L+RL L CS+L+ I L +LE LDLR C +L LP I
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLM 603
NL SL+L + + L + NL N+K + + S + P + LE L L GC++L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 604 ETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFE-LRLWGCLNLKNFPEI 655
L+ L L+ C +L +LP I + E L L GC+NL P +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 716 SNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLP 772
SNL+ F IS++ + L+L GN+L +P I++LS L+ LD+S+ L +LP
Sbjct: 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 196 QENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR------FTRK--KVLIVFDDVTH 247
Q+ GL Q L + L D++ S + LN + + RK + L++ DDV
Sbjct: 196 QDKSGLLMKLQNLCTRL--DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD 253
Query: 248 LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKELLDVDALKLFSRRAFGE 307
+++ D S +I++TTRDK V ++ ++ Y V + K +
Sbjct: 254 ----SWVLKAFD---SQCQILLTTRDKSV-TDSVMGPKYVVPVESSLGKEKGLEILSLFV 305
Query: 308 DDPNASYKELTQEAVKYAKGVPLALKVLGSFL--FGRRKEEWKSAMKKMEIVPHMEIQEV 365
+ A E +K KG PL + ++G+ L F R W+ +K+++ I++
Sbjct: 306 NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR---WEYYLKQLQNKQFKRIRKS 362
Query: 366 LKISYDGLDD 375
Y+ LD+
Sbjct: 363 SSYDYEALDE 372
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 267 IIITTRDKHVLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDD--PNASYKELTQEAVKY 324
+ R HV S+ V+ +YEV LL+ L RA G + PN S+ QEAV+
Sbjct: 237 LFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSF---WQEAVRV 293
Query: 325 AK 326
K
Sbjct: 294 LK 295
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 267 IIITTRDKHVLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDD--PNASYKELTQEAVKY 324
+ R HV S+ V+ +YEV LL+ L RA G + PN S+ QEAV+
Sbjct: 237 LFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSF---WQEAVRV 293
Query: 325 AK 326
K
Sbjct: 294 LK 295
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 196 QENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR------FTRK--KVLIVFDDVTH 247
Q+ GL Q L + L D++ S + LN + + RK + L++ DDV
Sbjct: 190 QDKSGLLMKLQNLCTRL--DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD 247
Query: 248 LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKELLDVDALKLFSRRAFGE 307
+++ D S +I++TTRDK V ++ ++ Y V + K +
Sbjct: 248 ----SWVLKAFD---SQCQILLTTRDKSV-TDSVMGPKYVVPVESSLGKEKGLEILSLFV 299
Query: 308 DDPNASYKELTQEAVKYAKGVPLALKVLGSFL--FGRRKEEWKSAMKKMEIVPHMEIQEV 365
+ A E +K KG PL + ++G+ L F R W+ +K+++ I++
Sbjct: 300 NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR---WEYYLKQLQNKQFKRIRKS 356
Query: 366 LKISYDGLDDHEQGIFLDISCFLVGED 392
Y+ LD+ + IS ++ ED
Sbjct: 357 SSYDYEALDEA-----MSISVEMLRED 378
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 51/256 (19%)
Query: 571 IDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLP 630
+D + K LS LP L LE L + ++ +E +Q + L+++D+ SL+ LP
Sbjct: 118 VDNNNLKALSDLPPL-----LEYLGV--SNNQLEKLPELQNSSFLKIIDVD-NNSLKKLP 169
Query: 631 DTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECG------IEDMPLSIECLSKLN 684
D S E G L+ PE+ ++ FL + D+PLS+E + N
Sbjct: 170 DLPPS---LEFIAAGNNQLEELPELQ--NLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224
Query: 685 SL--DIHNCTRLEYXXXXXXXXXXXXHIEISSCSNL-KRFPEISSSCNREGSTEVLHLKG 741
++ ++ L + I + +NL K P++ S E L+++
Sbjct: 225 NILEELPELQNLPFLTT------------IYADNNLLKTLPDLPPSL------EALNVRD 266
Query: 742 NNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHH------CTLLEALSGF 795
N L +PE + L+ LD+S L ELP NLY+L A C L +L
Sbjct: 267 NYLTDLPELPQSLT---FLDVSE-NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322
Query: 796 SLTHNNKWIHRRMYFP 811
+++ NNK I P
Sbjct: 323 NVS-NNKLIELPALPP 337
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 723 EISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLE 782
EI S C+ S E L++ N L +P L +L I+ L +PELP+NL L
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL----IASFNHLAEVPELPQNLKQLH 363
Query: 783 AHHCTLLE 790
+ L E
Sbjct: 364 VEYNPLRE 371
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 122/306 (39%), Gaps = 56/306 (18%)
Query: 479 LDMSKVNNEIR-INRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKT 537
LD+ K N I+ +N+ F+ P L L+ N+ ++S + F ++ F L+T
Sbjct: 37 LDLGK--NRIKTLNQDEFASFPHLEELEL---NENIVSAVEPGAFNNL-------FNLRT 84
Query: 538 LNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQ-ARNLERLKL 596
L +R+ L + L L N+ ++D+ +K + L + Q NL+ L++
Sbjct: 85 LGLRSNRLKLIPL---------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 597 DGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSE--SLFELRLWGCLNLKNFPE 654
+ +H + LN LE L L C +L S+P S L LRL LN+ +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRH-LNINAIRD 193
Query: 655 ISSSHIHFLDLYECGIEDMP----LSIECLSKLN--SLDIHNCT----------RLEYXX 698
S ++ L + E I P ++ CL LN SL I +C L Y
Sbjct: 194 YSFKRLYRLKVLE--ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 699 XXXXXXXXXXHIEISSCSNLKRFPEISSSCNREGSTE-----------VLHLKGNNLERI 747
IE S L R EI + E VL++ GN L +
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
Query: 748 PESIRH 753
ES+ H
Sbjct: 312 EESVFH 317
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 37/266 (13%)
Query: 514 LSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVS-LKLPGSNVEQLWDDVQNLVNIKEID 572
L++ P T + Y L L++ L++ L + + ++ DV + + E+D
Sbjct: 97 LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELD 154
Query: 573 LHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDT 632
H +K+++KL D++ L L S + +L+V +L L +
Sbjct: 155 CHLNKKITKL-DVTPQTQLTTLD-----------CSFNKITELDVSQNKLLNRLNCDTNN 202
Query: 633 ICSESL---FELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMP-LSIECLSKLNSLDI 688
I L +L C + K EI + + L ++C + + L + LSKL +L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL-- 259
Query: 689 HNCTRLEYXXXXXXXXXXXXHIEISSCSNLKRFPEISSS------CNREGSTEV------ 736
+C + + + + C +K ++ C G TE+
Sbjct: 260 -HCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318
Query: 737 --LHLKGNNLERIPESIRHLSKLKSL 760
++L NN E + H +KLKSL
Sbjct: 319 KLVYLYLNNTELTELDVSHNTKLKSL 344
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1 GDEISESLLDAIEASTISIIIFSERYASSRWC 32
G ISE+++ IE S SI + S + + WC
Sbjct: 77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,367,676
Number of Sequences: 62578
Number of extensions: 1170961
Number of successful extensions: 2698
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 28
length of query: 966
length of database: 14,973,337
effective HSP length: 108
effective length of query: 858
effective length of database: 8,214,913
effective search space: 7048395354
effective search space used: 7048395354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)