Query 046086
Match_columns 966
No_of_seqs 992 out of 6171
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-131 5E-136 1252.1 85.1 933 1-965 52-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-57 4.6E-62 545.4 32.4 590 135-745 161-807 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-37 3E-42 339.8 15.8 268 137-408 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.7E-30 5.9E-35 329.5 21.4 331 447-785 42-389 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.2E-28 2.6E-33 314.4 22.0 324 472-802 93-440 (968)
6 PLN03194 putative disease resi 100.0 2.4E-29 5.2E-34 239.6 10.5 111 1-125 67-179 (187)
7 KOG4194 Membrane glycoprotein 99.9 5.4E-28 1.2E-32 260.7 3.7 321 475-802 79-428 (873)
8 KOG4194 Membrane glycoprotein 99.9 4.6E-27 1E-31 253.5 1.8 298 473-776 126-437 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.1E-27 4.5E-32 257.1 -5.0 336 472-831 7-370 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.9E-26 4.1E-31 249.7 -1.6 294 470-773 76-380 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 1.4E-24 3.1E-29 225.1 -5.7 324 492-834 84-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 1.5E-22 3.2E-27 210.2 -2.3 162 477-646 117-307 (565)
13 PLN03210 Resistant to P. syrin 99.8 1.2E-19 2.5E-24 232.0 21.7 289 523-830 558-876 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 2.1E-19 4.5E-24 212.8 15.3 260 479-775 206-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 5.3E-19 1.2E-23 209.3 13.7 256 500-802 202-457 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.4E-23 208.3 13.7 244 500-768 179-428 (754)
17 KOG0618 Serine/threonine phosp 99.8 1.2E-20 2.5E-25 215.4 -3.7 226 492-723 38-327 (1081)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.4E-23 205.2 11.9 227 523-774 178-406 (754)
19 KOG0618 Serine/threonine phosp 99.7 6.8E-20 1.5E-24 209.2 -3.1 294 478-788 182-488 (1081)
20 KOG4237 Extracellular matrix p 99.6 6.8E-17 1.5E-21 168.5 -2.6 236 475-716 70-357 (498)
21 KOG4237 Extracellular matrix p 99.5 6.6E-16 1.4E-20 161.2 -2.4 260 513-776 57-343 (498)
22 PRK04841 transcriptional regul 99.5 1.7E-12 3.8E-17 165.2 25.4 293 127-443 9-334 (903)
23 KOG0617 Ras suppressor protein 99.5 4.3E-16 9.4E-21 144.2 -5.4 151 540-714 30-182 (264)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-14 3.6E-19 160.4 1.6 227 542-768 22-291 (319)
25 KOG0617 Ras suppressor protein 99.4 2.5E-15 5.3E-20 139.3 -4.6 157 561-767 28-185 (264)
26 cd00116 LRR_RI Leucine-rich re 99.4 2.6E-14 5.7E-19 158.7 1.9 205 560-767 75-319 (319)
27 PF01582 TIR: TIR domain; Int 99.4 5.5E-14 1.2E-18 135.2 2.7 92 1-92 41-140 (141)
28 COG2909 MalT ATP-dependent tra 99.2 6.7E-10 1.5E-14 128.3 19.7 294 127-444 14-341 (894)
29 PRK00411 cdc6 cell division co 99.2 2E-09 4.3E-14 123.1 23.3 282 130-423 28-358 (394)
30 TIGR00635 ruvB Holliday juncti 99.1 1.4E-09 3E-14 119.8 17.1 269 132-423 4-289 (305)
31 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.8E-17 138.6 -2.5 172 543-767 75-246 (722)
32 PF01637 Arch_ATPase: Archaeal 99.1 1.6E-10 3.5E-15 122.0 9.2 196 134-334 1-233 (234)
33 TIGR02928 orc1/cdc6 family rep 99.1 7.9E-09 1.7E-13 117.0 22.0 246 130-386 13-299 (365)
34 PRK00080 ruvB Holliday junctio 99.1 1.1E-09 2.4E-14 121.4 14.0 274 128-423 21-310 (328)
35 PF05729 NACHT: NACHT domain 99.1 1E-09 2.2E-14 109.0 12.3 143 156-304 1-163 (166)
36 smart00255 TIR Toll - interleu 99.1 4.3E-10 9.3E-15 108.3 9.2 90 6-95 46-138 (140)
37 COG3899 Predicted ATPase [Gene 99.1 2.7E-09 6E-14 130.8 17.7 304 134-442 2-387 (849)
38 TIGR03015 pepcterm_ATPase puta 99.0 2.1E-08 4.6E-13 108.3 20.8 178 155-339 43-242 (269)
39 COG4886 Leucine-rich repeat (L 99.0 5.9E-10 1.3E-14 127.6 6.7 197 547-773 97-295 (394)
40 KOG0532 Leucine-rich repeat (L 99.0 3.8E-11 8.1E-16 131.6 -3.1 197 515-715 63-270 (722)
41 KOG4658 Apoptotic ATPase [Sign 99.0 5.6E-10 1.2E-14 136.2 6.5 121 524-645 524-651 (889)
42 KOG1259 Nischarin, modulator o 99.0 2.3E-10 4.9E-15 115.7 2.1 126 659-802 285-411 (490)
43 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.6E-15 124.1 -0.6 208 541-769 119-340 (505)
44 COG4886 Leucine-rich repeat (L 98.9 9.7E-10 2.1E-14 125.8 6.4 175 523-722 116-294 (394)
45 KOG3207 Beta-tubulin folding c 98.8 3.8E-10 8.2E-15 120.4 -1.8 136 471-626 120-259 (505)
46 PRK06893 DNA replication initi 98.8 7.8E-08 1.7E-12 100.5 15.3 152 155-337 39-205 (229)
47 COG2256 MGS1 ATPase related to 98.8 6E-08 1.3E-12 103.5 13.3 172 129-330 21-207 (436)
48 KOG1909 Ran GTPase-activating 98.8 1.3E-09 2.9E-14 113.3 0.2 182 561-767 87-310 (382)
49 COG3903 Predicted ATPase [Gene 98.7 5.3E-09 1.1E-13 112.4 3.7 279 153-441 12-314 (414)
50 KOG1259 Nischarin, modulator o 98.7 3E-09 6.5E-14 107.8 1.2 59 659-718 353-412 (490)
51 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 100.7 4.0 125 495-621 15-148 (175)
52 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.2E-13 98.7 5.0 102 660-768 21-126 (175)
53 PLN03150 hypothetical protein; 98.6 6.2E-08 1.3E-12 116.2 9.5 108 660-770 420-530 (623)
54 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.8E-07 1.7E-11 93.3 15.7 175 131-338 14-204 (226)
55 PRK13342 recombination factor 98.6 1.9E-06 4.2E-11 98.4 20.1 178 128-336 8-197 (413)
56 PTZ00112 origin recognition co 98.6 6.6E-07 1.4E-11 104.7 15.7 244 130-385 753-1030(1164)
57 PRK15386 type III secretion pr 98.6 1.7E-07 3.7E-12 102.9 9.5 167 612-801 51-227 (426)
58 PRK15386 type III secretion pr 98.5 2.4E-07 5.2E-12 101.8 9.7 130 635-786 51-187 (426)
59 PLN03150 hypothetical protein; 98.5 1.3E-07 2.7E-12 113.6 8.2 106 544-649 419-528 (623)
60 PF05496 RuvB_N: Holliday junc 98.5 9.2E-07 2E-11 88.7 12.5 176 128-335 20-221 (233)
61 PTZ00202 tuzin; Provisional 98.5 8E-06 1.7E-10 89.1 20.2 209 83-304 192-434 (550)
62 PRK07003 DNA polymerase III su 98.5 4.8E-06 1E-10 97.5 18.9 193 128-334 12-220 (830)
63 KOG2120 SCF ubiquitin ligase, 98.5 3.3E-09 7.2E-14 107.6 -6.4 180 543-742 185-373 (419)
64 PRK12402 replication factor C 98.5 4.1E-06 9E-11 93.7 17.6 200 128-333 11-224 (337)
65 PLN03025 replication factor C 98.5 5.7E-06 1.2E-10 91.3 18.1 182 128-330 9-195 (319)
66 PF13401 AAA_22: AAA domain; P 98.5 1E-06 2.2E-11 83.6 10.5 114 154-273 3-125 (131)
67 TIGR01242 26Sp45 26S proteasom 98.5 2E-06 4.4E-11 96.8 14.6 174 130-329 120-328 (364)
68 PRK14961 DNA polymerase III su 98.4 6.1E-06 1.3E-10 92.6 17.8 191 128-331 12-216 (363)
69 KOG0531 Protein phosphatase 1, 98.4 3.7E-08 8.1E-13 113.0 -0.2 98 523-623 95-196 (414)
70 PRK00440 rfc replication facto 98.4 1.2E-05 2.7E-10 89.1 20.0 183 128-331 13-199 (319)
71 PRK14963 DNA polymerase III su 98.4 2.4E-05 5.1E-10 90.7 22.6 191 128-332 10-214 (504)
72 cd00009 AAA The AAA+ (ATPases 98.4 2E-06 4.3E-11 83.1 11.6 123 135-275 1-131 (151)
73 PF13191 AAA_16: AAA ATPase do 98.4 5.9E-07 1.3E-11 90.9 8.0 50 133-182 1-51 (185)
74 PRK04195 replication factor C 98.4 1.2E-05 2.6E-10 93.9 19.3 182 127-334 9-201 (482)
75 PRK14960 DNA polymerase III su 98.4 2E-05 4.4E-10 91.4 20.6 192 128-331 11-215 (702)
76 PRK08727 hypothetical protein; 98.4 8.3E-06 1.8E-10 85.5 15.6 169 131-332 18-201 (233)
77 PRK08903 DnaA regulatory inact 98.4 4.4E-06 9.4E-11 87.6 13.3 173 131-339 17-203 (227)
78 PF13173 AAA_14: AAA domain 98.4 2E-06 4.4E-11 81.1 9.6 119 156-296 3-127 (128)
79 PRK07471 DNA polymerase III su 98.4 4.3E-05 9.3E-10 85.0 21.5 200 127-335 14-238 (365)
80 PRK14949 DNA polymerase III su 98.4 2.6E-05 5.7E-10 93.3 20.7 187 128-334 12-220 (944)
81 COG1474 CDC6 Cdc6-related prot 98.3 1.8E-05 4E-10 87.8 18.3 243 131-387 16-291 (366)
82 KOG2028 ATPase related to the 98.3 3.5E-06 7.5E-11 88.3 11.4 150 128-303 134-293 (554)
83 KOG1909 Ran GTPase-activating 98.3 1.5E-07 3.2E-12 98.4 1.0 233 562-802 26-310 (382)
84 PRK14962 DNA polymerase III su 98.3 4.8E-05 1E-09 87.5 21.3 186 128-337 10-221 (472)
85 PRK05642 DNA replication initi 98.3 1.2E-05 2.7E-10 84.2 15.2 151 155-336 45-209 (234)
86 KOG0531 Protein phosphatase 1, 98.3 7.5E-08 1.6E-12 110.5 -1.7 33 734-766 234-266 (414)
87 PRK12323 DNA polymerase III su 98.3 8.6E-06 1.9E-10 94.2 14.4 197 128-332 12-222 (700)
88 PRK08084 DNA replication initi 98.3 1.6E-05 3.4E-10 83.5 15.2 171 132-335 22-209 (235)
89 PRK05564 DNA polymerase III su 98.3 2.1E-05 4.6E-10 86.6 16.5 176 132-334 4-189 (313)
90 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.4E-13 113.1 -7.4 130 659-805 165-294 (1096)
91 PF00308 Bac_DnaA: Bacterial d 98.3 2.5E-05 5.4E-10 80.9 15.9 158 154-333 33-206 (219)
92 PRK08691 DNA polymerase III su 98.3 3.1E-05 6.7E-10 90.8 18.1 193 128-332 12-217 (709)
93 PRK09087 hypothetical protein; 98.2 2.1E-05 4.5E-10 81.8 15.0 139 155-335 44-195 (226)
94 PRK03992 proteasome-activating 98.2 2.3E-05 4.9E-10 88.6 16.0 173 130-328 129-336 (389)
95 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.5E-10 91.3 15.8 183 128-335 12-221 (546)
96 TIGR02397 dnaX_nterm DNA polym 98.2 4.1E-05 9E-10 86.3 18.0 185 128-336 10-219 (355)
97 PRK06645 DNA polymerase III su 98.2 9.9E-05 2.1E-09 85.2 20.9 188 128-330 17-224 (507)
98 PRK13341 recombination factor 98.2 9.4E-06 2E-10 97.6 13.0 172 128-330 24-212 (725)
99 PRK14956 DNA polymerase III su 98.2 1.2E-05 2.7E-10 90.7 12.8 192 128-330 14-217 (484)
100 KOG2120 SCF ubiquitin ligase, 98.2 5.6E-08 1.2E-12 98.9 -5.6 172 523-716 185-374 (419)
101 PRK14964 DNA polymerase III su 98.2 0.00015 3.3E-09 83.0 20.9 179 128-330 9-212 (491)
102 KOG2982 Uncharacterized conser 98.2 6.5E-07 1.4E-11 91.3 1.6 192 540-773 68-267 (418)
103 PRK14087 dnaA chromosomal repl 98.2 7.4E-05 1.6E-09 85.8 18.5 166 155-338 141-322 (450)
104 PRK09112 DNA polymerase III su 98.2 6E-05 1.3E-09 83.4 17.0 196 127-335 18-240 (351)
105 PF13855 LRR_8: Leucine rich r 98.1 1.8E-06 3.9E-11 69.5 3.7 58 659-716 2-60 (61)
106 PF14516 AAA_35: AAA-like doma 98.1 0.00048 1E-08 76.2 23.9 206 127-341 6-245 (331)
107 PRK14951 DNA polymerase III su 98.1 0.0002 4.4E-09 84.3 21.5 194 128-332 12-222 (618)
108 PRK05896 DNA polymerase III su 98.1 0.00012 2.5E-09 85.2 19.1 195 128-335 12-221 (605)
109 PRK14955 DNA polymerase III su 98.1 0.00015 3.3E-09 82.3 19.3 197 128-331 12-224 (397)
110 PRK07994 DNA polymerase III su 98.1 5.5E-05 1.2E-09 89.2 15.8 192 128-331 12-216 (647)
111 TIGR00678 holB DNA polymerase 98.1 0.00015 3.3E-09 73.4 16.9 89 235-331 95-187 (188)
112 PRK07940 DNA polymerase III su 98.1 6.3E-05 1.4E-09 84.4 15.2 177 132-335 5-213 (394)
113 TIGR02903 spore_lon_C ATP-depe 98.1 9.9E-05 2.2E-09 88.1 17.5 50 128-179 150-199 (615)
114 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.6E-11 67.5 3.9 56 544-599 2-59 (61)
115 PRK14970 DNA polymerase III su 98.0 0.00023 5E-09 80.5 19.4 180 128-330 13-204 (367)
116 PRK14958 DNA polymerase III su 98.0 0.00016 3.6E-09 84.0 18.2 180 128-331 12-216 (509)
117 TIGR02881 spore_V_K stage V sp 98.0 5.5E-05 1.2E-09 81.0 13.0 153 133-305 7-192 (261)
118 PRK14969 DNA polymerase III su 98.0 0.00011 2.3E-09 86.2 15.6 179 128-330 12-215 (527)
119 PRK14959 DNA polymerase III su 98.0 0.00017 3.6E-09 84.4 16.9 186 128-338 12-224 (624)
120 PRK14952 DNA polymerase III su 98.0 0.00033 7.1E-09 82.3 19.0 196 128-335 9-220 (584)
121 PRK08451 DNA polymerase III su 98.0 0.00061 1.3E-08 78.9 20.8 181 128-333 10-216 (535)
122 TIGR03689 pup_AAA proteasome A 98.0 0.0001 2.2E-09 84.7 14.3 162 129-304 179-378 (512)
123 PHA02544 44 clamp loader, smal 97.9 7.4E-05 1.6E-09 82.7 12.8 151 127-302 16-171 (316)
124 PRK14953 DNA polymerase III su 97.9 0.00084 1.8E-08 77.7 21.6 196 128-335 12-220 (486)
125 PRK14954 DNA polymerase III su 97.9 0.00073 1.6E-08 80.0 21.0 197 128-330 12-223 (620)
126 PRK14950 DNA polymerase III su 97.9 0.00048 1E-08 82.2 19.7 196 128-335 12-221 (585)
127 PTZ00454 26S protease regulato 97.9 0.00025 5.5E-09 79.8 16.2 176 128-329 141-351 (398)
128 TIGR02639 ClpA ATP-dependent C 97.9 0.00013 2.8E-09 89.5 15.2 169 111-304 164-358 (731)
129 PRK09111 DNA polymerase III su 97.9 0.00054 1.2E-08 81.0 19.6 195 128-333 20-231 (598)
130 PRK14088 dnaA chromosomal repl 97.9 0.00025 5.5E-09 81.4 16.4 159 155-334 130-304 (440)
131 PTZ00361 26 proteosome regulat 97.9 6.5E-05 1.4E-09 85.1 11.4 155 130-306 181-369 (438)
132 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.8E-09 90.2 14.9 194 111-329 169-390 (852)
133 PRK07764 DNA polymerase III su 97.9 0.00037 8E-09 85.2 18.4 187 128-330 11-216 (824)
134 PRK00149 dnaA chromosomal repl 97.9 0.00023 4.9E-09 82.6 16.0 157 155-333 148-320 (450)
135 TIGR00362 DnaA chromosomal rep 97.9 0.00064 1.4E-08 77.8 19.2 157 155-333 136-308 (405)
136 PRK06620 hypothetical protein; 97.9 0.00012 2.5E-09 75.5 11.8 132 156-331 45-185 (214)
137 PRK07133 DNA polymerase III su 97.9 0.00065 1.4E-08 80.8 19.4 192 128-334 14-219 (725)
138 TIGR02880 cbbX_cfxQ probable R 97.9 0.00019 4.1E-09 77.5 13.9 152 133-304 23-208 (284)
139 PRK06647 DNA polymerase III su 97.9 0.0015 3.2E-08 76.9 22.1 194 128-332 12-217 (563)
140 PRK09376 rho transcription ter 97.8 3.5E-05 7.6E-10 84.1 7.6 92 156-249 170-269 (416)
141 KOG1859 Leucine-rich repeat pr 97.8 9.1E-07 2E-11 100.2 -4.7 153 492-648 102-291 (1096)
142 PRK06305 DNA polymerase III su 97.8 0.00053 1.1E-08 78.9 17.1 180 128-330 13-217 (451)
143 PRK12422 chromosomal replicati 97.8 0.00036 7.8E-09 79.9 15.5 152 156-329 142-307 (445)
144 COG2255 RuvB Holliday junction 97.8 0.00074 1.6E-08 69.5 15.6 259 128-423 22-311 (332)
145 PRK14948 DNA polymerase III su 97.8 0.0017 3.8E-08 77.3 21.5 196 128-334 12-221 (620)
146 CHL00181 cbbX CbbX; Provisiona 97.8 0.00089 1.9E-08 72.3 17.0 131 156-306 60-211 (287)
147 PF13676 TIR_2: TIR domain; PD 97.8 7.5E-06 1.6E-10 73.8 0.7 56 1-62 36-91 (102)
148 cd01128 rho_factor Transcripti 97.8 3.3E-05 7.1E-10 81.0 5.5 93 155-249 16-116 (249)
149 PRK14971 DNA polymerase III su 97.7 0.0029 6.2E-08 75.5 22.4 177 129-330 14-217 (614)
150 COG3267 ExeA Type II secretory 97.7 0.0016 3.5E-08 66.3 16.9 199 132-337 28-247 (269)
151 KOG2543 Origin recognition com 97.7 0.0013 2.9E-08 70.3 16.5 167 131-304 5-193 (438)
152 PRK05563 DNA polymerase III su 97.7 0.0022 4.7E-08 75.9 20.0 190 128-331 12-216 (559)
153 CHL00095 clpC Clp protease ATP 97.7 0.00038 8.1E-09 86.6 14.2 168 111-302 161-352 (821)
154 PF05673 DUF815: Protein of un 97.7 0.0018 3.9E-08 66.3 16.3 55 128-183 23-80 (249)
155 KOG0989 Replication factor C, 97.7 0.0016 3.5E-08 67.8 15.8 190 128-335 32-231 (346)
156 PRK14086 dnaA chromosomal repl 97.7 0.0011 2.3E-08 77.5 16.3 153 156-330 315-483 (617)
157 PF05621 TniB: Bacterial TniB 97.7 0.00096 2.1E-08 70.5 14.5 198 132-333 34-259 (302)
158 PRK10865 protein disaggregatio 97.6 0.00041 8.9E-09 86.2 13.7 154 129-304 175-354 (857)
159 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00066 1.4E-08 84.7 15.6 154 129-304 170-349 (852)
160 PF12799 LRR_4: Leucine Rich r 97.6 7.5E-05 1.6E-09 55.1 4.3 36 733-768 2-37 (44)
161 TIGR01241 FtsH_fam ATP-depende 97.6 0.001 2.2E-08 78.1 16.3 176 129-329 52-260 (495)
162 CHL00176 ftsH cell division pr 97.6 0.00065 1.4E-08 81.0 14.5 173 130-327 181-386 (638)
163 TIGR00767 rho transcription te 97.6 0.00016 3.6E-09 79.4 8.7 93 155-249 168-268 (415)
164 PRK08116 hypothetical protein; 97.6 0.00039 8.4E-09 74.3 11.2 102 156-274 115-221 (268)
165 PRK07399 DNA polymerase III su 97.6 0.0021 4.7E-08 70.1 17.1 192 132-335 4-221 (314)
166 PF00004 AAA: ATPase family as 97.6 0.00036 7.9E-09 65.9 9.7 23 158-180 1-23 (132)
167 KOG2982 Uncharacterized conser 97.6 1.3E-05 2.8E-10 82.1 -0.4 77 523-599 71-156 (418)
168 PRK12377 putative replication 97.6 0.00016 3.4E-09 75.8 7.5 36 155-190 101-136 (248)
169 KOG4341 F-box protein containi 97.6 4.6E-06 9.9E-11 89.4 -4.3 108 541-648 188-306 (483)
170 KOG4341 F-box protein containi 97.5 4E-06 8.7E-11 89.8 -5.0 198 494-692 159-383 (483)
171 smart00382 AAA ATPases associa 97.5 0.00038 8.3E-09 66.4 8.6 35 156-190 3-37 (148)
172 PRK05707 DNA polymerase III su 97.5 0.003 6.6E-08 69.4 16.5 94 235-335 106-203 (328)
173 COG1222 RPT1 ATP-dependent 26S 97.5 0.0021 4.4E-08 68.5 14.2 169 131-329 150-357 (406)
174 PF12799 LRR_4: Leucine Rich r 97.5 6.8E-05 1.5E-09 55.3 2.4 37 543-579 1-37 (44)
175 PRK14965 DNA polymerase III su 97.4 0.008 1.7E-07 71.5 20.5 185 128-335 12-221 (576)
176 PRK08181 transposase; Validate 97.4 0.00044 9.6E-09 73.4 8.8 35 156-190 107-141 (269)
177 KOG2227 Pre-initiation complex 97.4 0.0034 7.3E-08 69.1 15.3 173 129-305 147-339 (529)
178 TIGR00602 rad24 checkpoint pro 97.4 0.00072 1.6E-08 79.9 11.1 54 127-180 79-135 (637)
179 PRK11034 clpA ATP-dependent Cl 97.4 0.001 2.2E-08 80.8 12.6 153 131-304 185-362 (758)
180 TIGR01243 CDC48 AAA family ATP 97.4 0.0023 5E-08 79.0 15.7 175 130-329 176-381 (733)
181 PF01695 IstB_IS21: IstB-like 97.4 0.00025 5.4E-09 70.8 5.9 36 155-190 47-82 (178)
182 PRK07952 DNA replication prote 97.4 0.0016 3.5E-08 68.1 12.0 36 155-190 99-134 (244)
183 TIGR01243 CDC48 AAA family ATP 97.3 0.004 8.7E-08 76.9 15.9 173 131-329 452-657 (733)
184 COG1373 Predicted ATPase (AAA+ 97.3 0.003 6.4E-08 71.6 13.5 163 139-335 24-192 (398)
185 COG0593 DnaA ATPase involved i 97.3 0.0028 6.1E-08 70.4 12.8 134 154-306 112-259 (408)
186 KOG0731 AAA+-type ATPase conta 97.3 0.0059 1.3E-07 72.2 16.1 179 129-331 308-520 (774)
187 PRK10536 hypothetical protein; 97.3 0.0024 5.2E-08 66.3 11.4 55 130-188 53-109 (262)
188 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0038 8.2E-08 72.1 14.3 176 131-329 227-429 (489)
189 PRK09183 transposase/IS protei 97.2 0.0013 2.8E-08 69.9 9.6 36 155-190 102-137 (259)
190 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.3E-09 88.3 1.6 130 634-765 146-285 (699)
191 PRK06921 hypothetical protein; 97.2 0.00055 1.2E-08 73.0 6.7 36 155-190 117-153 (266)
192 COG5238 RNA1 Ran GTPase-activa 97.2 7.9E-05 1.7E-09 75.5 0.2 195 560-767 86-315 (388)
193 COG0542 clpA ATP-binding subun 97.2 0.0024 5.3E-08 76.0 12.1 119 132-260 491-619 (786)
194 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.7E-09 87.8 1.3 86 540-626 170-263 (699)
195 PRK11889 flhF flagellar biosyn 97.1 0.01 2.2E-07 65.3 15.2 37 154-190 240-276 (436)
196 PRK06526 transposase; Provisio 97.1 0.0012 2.5E-08 69.9 7.9 35 155-189 98-132 (254)
197 PRK06835 DNA replication prote 97.1 0.0011 2.3E-08 72.8 7.8 35 156-190 184-218 (329)
198 PLN00020 ribulose bisphosphate 97.1 0.0044 9.5E-08 67.2 12.0 30 153-182 146-175 (413)
199 PRK08769 DNA polymerase III su 97.1 0.022 4.7E-07 62.1 17.6 94 235-336 112-209 (319)
200 KOG4579 Leucine-rich repeat (L 97.1 3.4E-05 7.3E-10 70.2 -3.3 78 523-600 53-134 (177)
201 COG5238 RNA1 Ran GTPase-activa 97.1 0.00019 4.1E-09 72.8 1.3 219 542-769 29-286 (388)
202 KOG1644 U2-associated snRNP A' 97.1 0.00075 1.6E-08 65.9 5.1 82 542-624 41-124 (233)
203 KOG1644 U2-associated snRNP A' 97.1 0.00081 1.8E-08 65.7 5.3 55 660-715 44-98 (233)
204 COG2607 Predicted ATPase (AAA+ 97.1 0.011 2.4E-07 59.5 13.3 60 126-185 54-115 (287)
205 PRK10865 protein disaggregatio 97.1 0.0069 1.5E-07 75.4 14.8 59 131-189 567-632 (857)
206 COG0466 Lon ATP-dependent Lon 97.0 0.02 4.4E-07 66.6 17.0 158 131-304 322-508 (782)
207 PRK14974 cell division protein 97.0 0.0066 1.4E-07 66.6 12.8 29 154-182 139-167 (336)
208 PRK11331 5-methylcytosine-spec 97.0 0.0013 2.7E-08 73.8 7.2 55 132-190 175-231 (459)
209 KOG0730 AAA+-type ATPase [Post 97.0 0.0093 2E-07 68.5 14.1 154 133-308 435-619 (693)
210 KOG0744 AAA+-type ATPase [Post 97.0 0.0043 9.4E-08 64.9 10.2 80 155-248 177-262 (423)
211 PRK08058 DNA polymerase III su 97.0 0.0057 1.2E-07 67.7 12.1 146 133-303 6-181 (329)
212 TIGR00763 lon ATP-dependent pr 97.0 0.021 4.5E-07 70.9 18.2 52 132-183 320-375 (775)
213 PRK00771 signal recognition pa 97.0 0.015 3.2E-07 66.3 15.0 94 83-189 26-129 (437)
214 COG1484 DnaC DNA replication p 97.0 0.0022 4.8E-08 67.8 8.0 37 154-190 104-140 (254)
215 PF04665 Pox_A32: Poxvirus A32 97.0 0.00099 2.1E-08 68.8 5.1 34 157-190 15-48 (241)
216 PF10443 RNA12: RNA12 protein; 96.9 0.13 2.7E-06 57.3 21.6 102 236-341 148-284 (431)
217 TIGR00064 ftsY signal recognit 96.9 0.0075 1.6E-07 64.5 12.0 38 153-190 70-107 (272)
218 PRK10787 DNA-binding ATP-depen 96.9 0.02 4.4E-07 70.3 17.1 159 132-304 322-506 (784)
219 PRK08939 primosomal protein Dn 96.9 0.0038 8.3E-08 67.9 9.7 37 154-190 155-191 (306)
220 COG1223 Predicted ATPase (AAA+ 96.9 0.018 3.9E-07 58.5 13.4 172 131-328 120-318 (368)
221 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0073 1.6E-07 68.4 11.5 152 131-304 189-374 (802)
222 PHA00729 NTP-binding motif con 96.9 0.0046 1E-07 63.1 9.3 27 154-180 16-42 (226)
223 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0033 7.1E-08 60.8 7.3 118 156-275 3-139 (159)
224 TIGR02640 gas_vesic_GvpN gas v 96.8 0.011 2.4E-07 63.2 12.3 37 141-181 11-47 (262)
225 KOG0735 AAA+-type ATPase [Post 96.8 0.02 4.4E-07 66.0 14.4 160 155-335 431-616 (952)
226 TIGR03345 VI_ClpV1 type VI sec 96.8 0.013 2.8E-07 72.9 14.1 52 131-182 565-623 (852)
227 KOG0741 AAA+-type ATPase [Post 96.8 0.016 3.5E-07 64.6 13.0 130 153-303 536-685 (744)
228 KOG0991 Replication factor C, 96.8 0.01 2.2E-07 59.3 10.2 51 128-180 23-73 (333)
229 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0069 1.5E-07 63.9 9.7 93 156-250 70-177 (274)
230 TIGR03346 chaperone_ClpB ATP-d 96.8 0.017 3.6E-07 72.4 14.8 60 131-190 564-630 (852)
231 TIGR02639 ClpA ATP-dependent C 96.8 0.049 1.1E-06 67.2 18.7 50 131-180 453-509 (731)
232 cd01131 PilT Pilus retraction 96.7 0.0049 1.1E-07 62.8 8.2 111 156-277 2-112 (198)
233 PRK06090 DNA polymerase III su 96.7 0.05 1.1E-06 59.3 16.2 90 236-335 108-201 (319)
234 PRK05541 adenylylsulfate kinas 96.7 0.0067 1.5E-07 60.6 8.9 37 154-190 6-42 (176)
235 KOG4579 Leucine-rich repeat (L 96.7 0.00016 3.5E-09 65.9 -2.5 55 659-714 54-109 (177)
236 PRK09361 radB DNA repair and r 96.7 0.0054 1.2E-07 64.1 8.5 50 142-191 10-59 (225)
237 PRK08118 topology modulation p 96.7 0.0013 2.8E-08 65.0 3.3 32 157-188 3-37 (167)
238 TIGR02237 recomb_radB DNA repa 96.7 0.0049 1.1E-07 63.6 7.7 46 146-191 3-48 (209)
239 PF07728 AAA_5: AAA domain (dy 96.6 0.0017 3.6E-08 62.2 3.8 22 158-179 2-23 (139)
240 cd01120 RecA-like_NTPases RecA 96.6 0.015 3.2E-07 57.1 10.8 34 157-190 1-34 (165)
241 PRK04296 thymidine kinase; Pro 96.6 0.0044 9.5E-08 62.7 7.0 111 156-275 3-117 (190)
242 cd01394 radB RadB. The archaea 96.6 0.0072 1.6E-07 62.8 8.9 50 141-190 5-54 (218)
243 CHL00095 clpC Clp protease ATP 96.6 0.031 6.8E-07 69.8 15.9 119 131-259 508-636 (821)
244 PRK10733 hflB ATP-dependent me 96.6 0.032 6.9E-07 67.5 15.5 153 132-306 152-337 (644)
245 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0016 3.6E-08 71.0 3.9 48 133-180 52-103 (361)
246 PF13207 AAA_17: AAA domain; P 96.6 0.0017 3.7E-08 60.4 3.5 23 157-179 1-23 (121)
247 COG0470 HolB ATPase involved i 96.6 0.017 3.6E-07 64.2 12.1 49 133-181 2-50 (325)
248 TIGR00959 ffh signal recogniti 96.6 0.057 1.2E-06 61.3 16.3 26 155-180 99-124 (428)
249 PRK07261 topology modulation p 96.6 0.0066 1.4E-07 60.3 7.9 23 157-179 2-24 (171)
250 PRK12608 transcription termina 96.6 0.0084 1.8E-07 65.8 9.1 104 143-249 122-233 (380)
251 cd01393 recA_like RecA is a b 96.6 0.014 3.1E-07 60.9 10.8 50 142-191 6-61 (226)
252 PF02562 PhoH: PhoH-like prote 96.6 0.01 2.2E-07 60.0 9.0 128 137-275 5-157 (205)
253 PRK06871 DNA polymerase III su 96.6 0.096 2.1E-06 57.3 17.1 90 235-331 106-199 (325)
254 PRK06964 DNA polymerase III su 96.6 0.12 2.5E-06 57.0 17.9 91 235-335 131-225 (342)
255 PRK07993 DNA polymerase III su 96.5 0.04 8.6E-07 60.8 14.1 91 235-332 107-201 (334)
256 PF13177 DNA_pol3_delta2: DNA 96.5 0.019 4.1E-07 56.4 10.4 137 136-291 1-161 (162)
257 PRK06067 flagellar accessory p 96.5 0.012 2.7E-07 61.8 9.7 50 141-190 11-60 (234)
258 COG2812 DnaX DNA polymerase II 96.5 0.071 1.5E-06 61.3 16.1 188 129-329 13-214 (515)
259 TIGR01425 SRP54_euk signal rec 96.5 0.067 1.5E-06 60.4 15.6 37 154-190 99-135 (429)
260 KOG2228 Origin recognition com 96.5 0.038 8.3E-07 58.5 12.5 144 130-274 22-182 (408)
261 KOG0734 AAA+-type ATPase conta 96.4 0.022 4.8E-07 63.6 11.2 152 131-304 303-484 (752)
262 PF14532 Sigma54_activ_2: Sigm 96.4 0.0029 6.3E-08 60.4 4.0 46 135-180 1-46 (138)
263 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.6E-08 66.4 2.4 86 678-768 40-129 (260)
264 PF07693 KAP_NTPase: KAP famil 96.4 0.072 1.6E-06 59.1 15.8 45 138-182 2-47 (325)
265 COG1618 Predicted nucleotide k 96.4 0.0032 6.9E-08 59.4 3.9 38 156-193 6-45 (179)
266 PRK04132 replication factor C 96.4 0.059 1.3E-06 65.9 15.4 151 161-332 570-728 (846)
267 KOG1514 Origin recognition com 96.4 0.079 1.7E-06 61.6 15.3 167 130-304 394-589 (767)
268 KOG0728 26S proteasome regulat 96.4 0.087 1.9E-06 53.2 13.7 145 134-304 148-331 (404)
269 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.016 3.5E-07 55.7 8.6 101 155-279 26-132 (144)
270 PF13671 AAA_33: AAA domain; P 96.3 0.023 4.9E-07 54.5 9.6 24 157-180 1-24 (143)
271 PRK07667 uridine kinase; Provi 96.3 0.0079 1.7E-07 61.1 6.6 42 141-182 3-44 (193)
272 PRK06696 uridine kinase; Valid 96.3 0.0062 1.3E-07 63.5 5.9 46 137-182 3-49 (223)
273 cd03214 ABC_Iron-Siderophores_ 96.3 0.029 6.2E-07 56.3 10.3 120 155-278 25-162 (180)
274 PRK08699 DNA polymerase III su 96.3 0.15 3.3E-06 56.0 16.8 85 236-331 114-202 (325)
275 KOG2739 Leucine-rich acidic nu 96.2 0.0035 7.6E-08 64.1 3.5 104 660-766 45-154 (260)
276 PRK10867 signal recognition pa 96.2 0.14 3.1E-06 58.2 16.6 29 154-182 99-127 (433)
277 PRK11034 clpA ATP-dependent Cl 96.2 0.038 8.2E-07 67.5 12.7 50 131-180 457-513 (758)
278 COG4088 Predicted nucleotide k 96.2 0.018 3.9E-07 56.6 7.9 32 156-187 2-33 (261)
279 TIGR02902 spore_lonB ATP-depen 96.2 0.024 5.1E-07 66.9 10.7 49 129-179 62-110 (531)
280 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.032 7E-07 58.7 10.7 50 141-190 7-56 (237)
281 PF00158 Sigma54_activat: Sigm 96.2 0.022 4.8E-07 56.2 8.7 46 134-179 1-46 (168)
282 PRK12724 flagellar biosynthesi 96.2 0.14 3.1E-06 57.3 15.8 25 155-179 223-247 (432)
283 cd00983 recA RecA is a bacter 96.1 0.016 3.6E-07 62.9 8.2 99 141-246 40-143 (325)
284 PRK05800 cobU adenosylcobinami 96.1 0.0098 2.1E-07 58.8 5.9 80 157-245 3-85 (170)
285 PF00448 SRP54: SRP54-type pro 96.1 0.0098 2.1E-07 60.3 6.0 36 155-190 1-36 (196)
286 COG0464 SpoVK ATPases of the A 96.1 0.035 7.7E-07 65.4 11.6 153 132-306 242-425 (494)
287 PRK06762 hypothetical protein; 96.1 0.029 6.3E-07 55.4 9.3 24 156-179 3-26 (166)
288 PRK09354 recA recombinase A; P 96.1 0.018 4E-07 63.0 8.1 99 141-246 45-148 (349)
289 COG0488 Uup ATPase components 96.0 0.22 4.7E-06 58.3 17.3 58 227-290 448-511 (530)
290 KOG2035 Replication factor C, 96.0 0.14 3E-06 52.9 13.5 209 130-355 11-259 (351)
291 cd01121 Sms Sms (bacterial rad 96.0 0.021 4.5E-07 63.9 8.4 50 141-190 68-117 (372)
292 cd00544 CobU Adenosylcobinamid 96.0 0.017 3.7E-07 57.0 6.9 30 158-190 2-31 (169)
293 PRK05703 flhF flagellar biosyn 96.0 0.16 3.4E-06 58.1 15.6 36 155-190 221-258 (424)
294 PRK10416 signal recognition pa 96.0 0.043 9.4E-07 60.0 10.6 29 154-182 113-141 (318)
295 cd03223 ABCD_peroxisomal_ALDP 96.0 0.039 8.5E-07 54.5 9.5 123 155-288 27-160 (166)
296 KOG0729 26S proteasome regulat 96.0 0.085 1.8E-06 53.8 11.6 56 132-192 177-243 (435)
297 PRK05986 cob(I)alamin adenolsy 96.0 0.025 5.5E-07 56.2 7.9 120 154-274 21-158 (191)
298 KOG0652 26S proteasome regulat 96.0 0.19 4.1E-06 51.2 14.0 164 131-320 170-372 (424)
299 cd03247 ABCC_cytochrome_bd The 95.9 0.061 1.3E-06 53.8 10.8 125 155-289 28-170 (178)
300 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.043 9.3E-07 57.7 10.2 50 142-191 6-61 (235)
301 COG4608 AppF ABC-type oligopep 95.9 0.025 5.5E-07 58.8 7.8 124 154-280 38-176 (268)
302 TIGR02012 tigrfam_recA protein 95.9 0.023 5E-07 61.7 7.9 99 141-246 40-143 (321)
303 PRK08533 flagellar accessory p 95.9 0.04 8.6E-07 57.6 9.5 48 143-190 12-59 (230)
304 cd02027 APSK Adenosine 5'-phos 95.9 0.046 1E-06 52.9 9.3 24 157-180 1-24 (149)
305 PF01583 APS_kinase: Adenylyls 95.9 0.012 2.5E-07 56.7 5.0 35 156-190 3-37 (156)
306 COG0542 clpA ATP-binding subun 95.9 0.049 1.1E-06 65.3 11.1 152 130-304 168-346 (786)
307 KOG1969 DNA replication checkp 95.9 0.021 4.5E-07 66.3 7.7 78 152-249 323-400 (877)
308 TIGR00708 cobA cob(I)alamin ad 95.8 0.033 7.1E-07 54.6 8.0 119 155-274 5-140 (173)
309 PRK15455 PrkA family serine pr 95.8 0.0094 2E-07 68.4 4.7 50 132-181 76-129 (644)
310 KOG0733 Nuclear AAA ATPase (VC 95.8 0.094 2E-06 59.8 12.3 128 156-305 546-693 (802)
311 cd03216 ABC_Carb_Monos_I This 95.8 0.026 5.6E-07 55.6 7.3 124 155-288 26-155 (163)
312 COG0465 HflB ATP-dependent Zn 95.8 0.051 1.1E-06 63.3 10.6 172 130-330 148-356 (596)
313 TIGR01817 nifA Nif-specific re 95.8 0.11 2.4E-06 61.8 14.0 52 129-180 193-244 (534)
314 TIGR01420 pilT_fam pilus retra 95.8 0.024 5.2E-07 63.1 7.8 108 155-274 122-230 (343)
315 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.06 1.3E-06 54.1 10.1 23 157-179 1-23 (183)
316 PRK13531 regulatory ATPase Rav 95.8 0.014 3E-07 66.2 5.8 47 131-181 19-65 (498)
317 COG0572 Udk Uridine kinase [Nu 95.8 0.014 3E-07 59.0 5.1 30 153-182 6-35 (218)
318 PRK12726 flagellar biosynthesi 95.8 0.21 4.7E-06 55.0 14.6 100 154-256 205-309 (407)
319 PRK04328 hypothetical protein; 95.7 0.061 1.3E-06 57.0 10.3 49 142-190 10-58 (249)
320 PRK08233 hypothetical protein; 95.7 0.028 6E-07 56.5 7.5 26 155-180 3-28 (182)
321 cd03228 ABCC_MRP_Like The MRP 95.7 0.083 1.8E-06 52.5 10.7 125 155-288 28-167 (171)
322 TIGR01650 PD_CobS cobaltochela 95.7 0.1 2.2E-06 56.7 11.9 49 132-184 45-93 (327)
323 PF13238 AAA_18: AAA domain; P 95.7 0.0085 1.8E-07 56.2 3.3 22 158-179 1-22 (129)
324 KOG2123 Uncharacterized conser 95.7 0.0011 2.4E-08 67.7 -2.9 90 528-619 24-123 (388)
325 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.064 1.4E-06 56.1 10.3 51 141-191 6-56 (229)
326 cd01129 PulE-GspE PulE/GspE Th 95.7 0.039 8.5E-07 58.8 8.6 103 140-257 68-170 (264)
327 KOG0727 26S proteasome regulat 95.7 0.23 4.9E-06 50.4 13.1 150 132-303 155-338 (408)
328 cd03222 ABC_RNaseL_inhibitor T 95.7 0.052 1.1E-06 54.0 8.8 114 155-289 25-146 (177)
329 KOG0651 26S proteasome regulat 95.6 0.061 1.3E-06 56.4 9.3 29 155-183 166-194 (388)
330 PRK12723 flagellar biosynthesi 95.6 0.072 1.6E-06 59.7 10.7 27 154-180 173-199 (388)
331 COG0468 RecA RecA/RadA recombi 95.6 0.072 1.6E-06 56.6 10.1 98 143-245 48-150 (279)
332 cd03115 SRP The signal recogni 95.6 0.03 6.5E-07 55.8 7.0 34 157-190 2-35 (173)
333 KOG2004 Mitochondrial ATP-depe 95.5 0.014 2.9E-07 67.6 4.6 53 132-184 411-467 (906)
334 PF08433 KTI12: Chromatin asso 95.5 0.037 8.1E-07 58.9 7.7 35 156-190 2-36 (270)
335 cd01858 NGP_1 NGP-1. Autoanti 95.5 0.097 2.1E-06 51.1 10.1 122 8-177 2-124 (157)
336 PF13604 AAA_30: AAA domain; P 95.5 0.077 1.7E-06 54.0 9.7 113 142-274 8-131 (196)
337 PF07726 AAA_3: ATPase family 95.5 0.0072 1.6E-07 55.5 1.9 29 158-186 2-30 (131)
338 cd03246 ABCC_Protease_Secretio 95.5 0.078 1.7E-06 52.8 9.6 126 155-288 28-168 (173)
339 PF00485 PRK: Phosphoribulokin 95.5 0.012 2.6E-07 59.9 3.7 26 157-182 1-26 (194)
340 COG0563 Adk Adenylate kinase a 95.5 0.035 7.6E-07 55.2 6.8 93 157-257 2-99 (178)
341 TIGR03574 selen_PSTK L-seryl-t 95.5 0.054 1.2E-06 57.5 8.8 26 157-182 1-26 (249)
342 COG2884 FtsE Predicted ATPase 95.4 0.085 1.8E-06 51.5 8.8 57 223-281 142-204 (223)
343 cd02019 NK Nucleoside/nucleoti 95.4 0.022 4.7E-07 46.9 4.2 23 157-179 1-23 (69)
344 TIGR03499 FlhF flagellar biosy 95.3 0.072 1.6E-06 57.5 9.3 37 154-190 193-231 (282)
345 PRK00889 adenylylsulfate kinas 95.3 0.065 1.4E-06 53.4 8.4 35 155-189 4-38 (175)
346 cd01122 GP4d_helicase GP4d_hel 95.3 0.085 1.8E-06 56.9 9.9 54 153-212 28-82 (271)
347 KOG0726 26S proteasome regulat 95.3 0.12 2.7E-06 53.4 10.2 55 130-184 183-248 (440)
348 TIGR02858 spore_III_AA stage I 95.3 0.075 1.6E-06 56.6 9.1 117 154-277 110-232 (270)
349 TIGR00416 sms DNA repair prote 95.3 0.051 1.1E-06 62.6 8.3 53 138-190 77-129 (454)
350 cd03230 ABC_DR_subfamily_A Thi 95.3 0.075 1.6E-06 52.9 8.6 126 155-288 26-168 (173)
351 PHA02244 ATPase-like protein 95.2 0.065 1.4E-06 58.8 8.5 48 131-182 95-146 (383)
352 PF13306 LRR_5: Leucine rich r 95.2 0.057 1.2E-06 50.6 7.3 40 489-532 2-44 (129)
353 COG1066 Sms Predicted ATP-depe 95.2 0.096 2.1E-06 57.3 9.6 50 140-190 78-127 (456)
354 PRK03839 putative kinase; Prov 95.2 0.014 3E-07 58.6 3.2 24 157-180 2-25 (180)
355 cd03238 ABC_UvrA The excision 95.2 0.078 1.7E-06 52.7 8.4 23 155-177 21-43 (176)
356 PRK00625 shikimate kinase; Pro 95.2 0.015 3.2E-07 57.7 3.1 24 157-180 2-25 (173)
357 PRK06731 flhF flagellar biosyn 95.2 0.48 1E-05 50.4 14.6 36 155-190 75-110 (270)
358 KOG0743 AAA+-type ATPase [Post 95.2 0.21 4.5E-06 55.6 12.0 149 156-339 236-413 (457)
359 COG4618 ArpD ABC-type protease 95.1 0.14 3.1E-06 57.5 10.7 22 156-177 363-384 (580)
360 PRK11823 DNA repair protein Ra 95.1 0.085 1.9E-06 60.8 9.6 51 140-190 65-115 (446)
361 PRK15429 formate hydrogenlyase 95.1 0.067 1.4E-06 65.7 9.3 50 131-180 375-424 (686)
362 PF00560 LRR_1: Leucine Rich R 95.1 0.0086 1.9E-07 36.8 0.8 21 733-753 1-21 (22)
363 PRK06217 hypothetical protein; 95.1 0.061 1.3E-06 54.1 7.5 24 157-180 3-26 (183)
364 PTZ00301 uridine kinase; Provi 95.1 0.018 3.9E-07 58.9 3.6 29 155-183 3-31 (210)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 95.1 0.17 3.6E-06 48.4 10.1 53 5-59 2-54 (141)
366 PF00910 RNA_helicase: RNA hel 95.1 0.013 2.9E-07 53.0 2.3 26 158-183 1-26 (107)
367 TIGR03600 phage_DnaB phage rep 95.1 0.61 1.3E-05 53.7 16.5 73 134-213 174-247 (421)
368 PRK04040 adenylate kinase; Pro 95.1 0.02 4.4E-07 57.6 3.8 25 156-180 3-27 (188)
369 cd03229 ABC_Class3 This class 95.1 0.05 1.1E-06 54.5 6.6 35 155-190 26-60 (178)
370 cd03232 ABC_PDR_domain2 The pl 95.1 0.13 2.8E-06 52.2 9.7 24 155-178 33-56 (192)
371 PRK14722 flhF flagellar biosyn 95.1 0.2 4.3E-06 55.8 11.7 37 154-190 136-174 (374)
372 PRK12727 flagellar biosynthesi 95.1 0.27 5.8E-06 56.7 13.0 37 154-190 349-387 (559)
373 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.039 8.4E-07 53.9 5.6 122 156-288 26-153 (157)
374 PRK04301 radA DNA repair and r 95.0 0.11 2.3E-06 57.4 9.6 49 142-190 89-143 (317)
375 COG1875 NYN ribonuclease and A 94.9 0.24 5.3E-06 53.3 11.4 24 153-176 243-266 (436)
376 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.11 2.3E-06 67.4 10.3 26 155-180 1630-1655(2281)
377 PRK05480 uridine/cytidine kina 94.9 0.022 4.9E-07 58.7 3.8 27 153-179 4-30 (209)
378 PF10236 DAP3: Mitochondrial r 94.9 0.96 2.1E-05 49.5 16.6 48 285-332 258-306 (309)
379 KOG2123 Uncharacterized conser 94.9 0.0021 4.6E-08 65.7 -3.7 73 523-595 41-123 (388)
380 cd01125 repA Hexameric Replica 94.9 0.28 6.1E-06 51.6 12.1 24 157-180 3-26 (239)
381 TIGR02788 VirB11 P-type DNA tr 94.9 0.05 1.1E-06 59.6 6.6 109 154-274 143-253 (308)
382 COG1136 SalX ABC-type antimicr 94.9 0.16 3.4E-06 52.1 9.6 64 223-289 147-216 (226)
383 PRK09270 nucleoside triphospha 94.9 0.036 7.8E-07 58.0 5.1 32 152-183 30-61 (229)
384 PF00406 ADK: Adenylate kinase 94.8 0.064 1.4E-06 52.0 6.5 88 160-256 1-94 (151)
385 KOG1970 Checkpoint RAD17-RFC c 94.8 0.14 3E-06 58.0 9.6 48 133-180 83-135 (634)
386 COG2274 SunT ABC-type bacterio 94.8 0.15 3.2E-06 61.9 10.8 24 155-178 499-522 (709)
387 TIGR00390 hslU ATP-dependent p 94.8 0.059 1.3E-06 60.0 6.8 52 132-183 12-75 (441)
388 PRK00131 aroK shikimate kinase 94.8 0.023 5.1E-07 56.5 3.5 26 155-180 4-29 (175)
389 TIGR01069 mutS2 MutS2 family p 94.8 0.046 9.9E-07 67.2 6.5 111 235-355 401-521 (771)
390 TIGR02238 recomb_DMC1 meiotic 94.8 0.12 2.6E-06 56.4 9.1 50 141-190 82-137 (313)
391 cd02021 GntK Gluconate kinase 94.8 0.14 3.1E-06 49.4 8.8 23 157-179 1-23 (150)
392 cd01130 VirB11-like_ATPase Typ 94.7 0.037 7.9E-07 55.9 4.7 93 155-255 25-119 (186)
393 PF00154 RecA: recA bacterial 94.7 0.12 2.7E-06 55.9 8.9 105 139-248 36-143 (322)
394 KOG3928 Mitochondrial ribosome 94.7 0.41 8.9E-06 52.4 12.6 53 284-339 404-460 (461)
395 TIGR01360 aden_kin_iso1 adenyl 94.7 0.025 5.5E-07 57.1 3.5 26 154-179 2-27 (188)
396 TIGR00235 udk uridine kinase. 94.7 0.029 6.2E-07 57.7 3.9 28 153-180 4-31 (207)
397 TIGR00150 HI0065_YjeE ATPase, 94.7 0.04 8.7E-07 51.6 4.4 40 141-180 8-47 (133)
398 PRK13947 shikimate kinase; Pro 94.7 0.024 5.1E-07 56.4 3.0 26 157-182 3-28 (171)
399 PRK05973 replicative DNA helic 94.6 0.15 3.2E-06 53.0 8.9 38 153-190 62-99 (237)
400 KOG0736 Peroxisome assembly fa 94.6 1.2 2.6E-05 52.7 16.8 190 132-353 672-898 (953)
401 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.051 1.1E-06 57.9 5.7 41 150-190 31-71 (259)
402 COG0467 RAD55 RecA-superfamily 94.6 0.087 1.9E-06 56.4 7.4 47 144-190 12-58 (260)
403 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.19 4.1E-06 51.3 9.6 24 155-178 26-49 (200)
404 PF13481 AAA_25: AAA domain; P 94.6 0.22 4.7E-06 50.5 10.0 26 156-181 33-58 (193)
405 PRK10463 hydrogenase nickel in 94.5 0.06 1.3E-06 57.4 5.9 32 153-184 102-133 (290)
406 cd03240 ABC_Rad50 The catalyti 94.5 0.2 4.4E-06 51.3 9.6 20 157-176 24-43 (204)
407 cd03213 ABCG_EPDR ABCG transpo 94.5 0.2 4.3E-06 50.9 9.5 35 155-189 35-70 (194)
408 cd03237 ABC_RNaseL_inhibitor_d 94.5 0.2 4.2E-06 53.0 9.6 25 155-179 25-49 (246)
409 TIGR00455 apsK adenylylsulfate 94.5 0.17 3.6E-06 51.0 8.8 28 154-181 17-44 (184)
410 COG1224 TIP49 DNA helicase TIP 94.5 0.1 2.2E-06 55.8 7.2 56 129-184 36-94 (450)
411 cd03233 ABC_PDR_domain1 The pl 94.5 0.21 4.6E-06 51.1 9.6 26 155-180 33-58 (202)
412 TIGR02655 circ_KaiC circadian 94.4 0.098 2.1E-06 61.2 7.9 52 139-190 247-298 (484)
413 PRK06547 hypothetical protein; 94.4 0.037 8E-07 54.8 3.8 27 153-179 13-39 (172)
414 TIGR02974 phageshock_pspF psp 94.4 0.1 2.2E-06 57.7 7.6 46 134-179 1-46 (329)
415 PRK07132 DNA polymerase III su 94.4 1.7 3.6E-05 47.2 16.7 167 141-335 5-185 (299)
416 PF03308 ArgK: ArgK protein; 94.4 0.11 2.5E-06 53.7 7.3 40 143-182 17-56 (266)
417 COG1428 Deoxynucleoside kinase 94.4 0.031 6.6E-07 55.8 3.0 26 155-180 4-29 (216)
418 PRK03846 adenylylsulfate kinas 94.4 0.055 1.2E-06 55.2 5.1 38 153-190 22-59 (198)
419 COG1120 FepC ABC-type cobalami 94.4 0.066 1.4E-06 56.0 5.6 57 223-280 143-205 (258)
420 cd00227 CPT Chloramphenicol (C 94.4 0.034 7.3E-07 55.5 3.4 26 156-181 3-28 (175)
421 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.16 3.4E-06 52.9 8.3 54 224-279 145-204 (254)
422 cd03215 ABC_Carb_Monos_II This 94.4 0.2 4.3E-06 50.3 9.0 34 155-189 26-59 (182)
423 COG5635 Predicted NTPase (NACH 94.3 0.3 6.6E-06 61.1 12.4 194 157-355 224-448 (824)
424 PRK05022 anaerobic nitric oxid 94.3 0.1 2.3E-06 61.5 8.0 51 130-180 185-235 (509)
425 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.097 2.1E-06 58.3 7.2 102 154-274 61-167 (362)
426 PRK12337 2-phosphoglycerate ki 94.3 0.033 7.2E-07 62.8 3.4 27 154-180 254-280 (475)
427 PRK08006 replicative DNA helic 94.3 0.36 7.8E-06 56.0 11.9 72 134-212 204-276 (471)
428 cd02028 UMPK_like Uridine mono 94.2 0.049 1.1E-06 54.5 4.3 26 157-182 1-26 (179)
429 PRK13539 cytochrome c biogenes 94.2 0.21 4.5E-06 51.4 9.0 26 154-179 27-52 (207)
430 PRK05201 hslU ATP-dependent pr 94.2 0.054 1.2E-06 60.4 4.8 52 132-183 15-78 (443)
431 cd03369 ABCC_NFT1 Domain 2 of 94.2 0.57 1.2E-05 48.1 12.2 24 155-178 34-57 (207)
432 PTZ00088 adenylate kinase 1; P 94.2 0.14 3.1E-06 53.2 7.6 22 158-179 9-30 (229)
433 PRK13949 shikimate kinase; Pro 94.2 0.038 8.2E-07 54.7 3.2 24 157-180 3-26 (169)
434 TIGR01351 adk adenylate kinase 94.2 0.2 4.4E-06 51.6 8.7 22 158-179 2-23 (210)
435 cd03244 ABCC_MRP_domain2 Domai 94.2 0.41 8.8E-06 49.7 11.2 24 155-178 30-53 (221)
436 TIGR03575 selen_PSTK_euk L-ser 94.1 0.15 3.4E-06 55.9 8.1 23 158-180 2-24 (340)
437 COG2842 Uncharacterized ATPase 94.1 0.75 1.6E-05 48.6 12.6 159 127-308 67-227 (297)
438 TIGR02524 dot_icm_DotB Dot/Icm 94.1 0.082 1.8E-06 58.9 6.0 96 155-256 134-232 (358)
439 PF00437 T2SE: Type II/IV secr 94.1 0.039 8.5E-07 59.4 3.4 125 132-272 104-230 (270)
440 PF06068 TIP49: TIP49 C-termin 94.1 0.076 1.7E-06 57.7 5.4 58 130-187 22-82 (398)
441 PRK13948 shikimate kinase; Pro 94.1 0.044 9.5E-07 54.7 3.4 28 154-181 9-36 (182)
442 PF00560 LRR_1: Leucine Rich R 94.0 0.03 6.6E-07 34.3 1.4 20 660-679 2-21 (22)
443 PRK01184 hypothetical protein; 94.0 0.1 2.2E-06 52.5 6.2 22 156-178 2-23 (184)
444 PF08423 Rad51: Rad51; InterP 94.0 0.27 5.8E-06 52.2 9.4 49 142-190 25-79 (256)
445 PRK08506 replicative DNA helic 94.0 0.44 9.5E-06 55.5 11.9 74 133-213 171-244 (472)
446 COG3910 Predicted ATPase [Gene 94.0 0.53 1.1E-05 46.0 10.2 63 225-289 136-202 (233)
447 PRK00279 adk adenylate kinase; 93.9 0.22 4.9E-06 51.5 8.6 24 157-180 2-25 (215)
448 COG0703 AroK Shikimate kinase 93.9 0.044 9.6E-07 53.3 3.1 27 157-183 4-30 (172)
449 TIGR01313 therm_gnt_kin carboh 93.9 0.21 4.6E-06 49.0 8.1 22 158-179 1-22 (163)
450 PF03205 MobB: Molybdopterin g 93.9 0.072 1.6E-06 50.7 4.5 35 156-190 1-36 (140)
451 PF03266 NTPase_1: NTPase; In 93.9 0.044 9.5E-07 54.0 3.1 24 158-181 2-25 (168)
452 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.9 0.38 8.2E-06 50.7 10.4 25 155-179 29-53 (238)
453 KOG0739 AAA+-type ATPase [Post 93.9 0.7 1.5E-05 48.3 11.6 50 132-181 133-192 (439)
454 PRK13946 shikimate kinase; Pro 93.9 0.044 9.6E-07 55.1 3.1 26 155-180 10-35 (184)
455 COG3854 SpoIIIAA ncharacterize 93.8 0.34 7.5E-06 48.8 9.0 111 155-274 137-253 (308)
456 KOG1947 Leucine rich repeat pr 93.8 0.0065 1.4E-07 71.5 -3.6 61 564-624 186-254 (482)
457 COG0003 ArsA Predicted ATPase 93.8 0.083 1.8E-06 57.5 5.2 36 155-190 2-37 (322)
458 cd00464 SK Shikimate kinase (S 93.8 0.047 1E-06 53.0 3.1 23 158-180 2-24 (154)
459 cd03289 ABCC_CFTR2 The CFTR su 93.8 0.53 1.1E-05 50.6 11.3 34 155-190 30-63 (275)
460 cd02020 CMPK Cytidine monophos 93.8 0.045 9.7E-07 52.7 2.9 24 157-180 1-24 (147)
461 cd02024 NRK1 Nicotinamide ribo 93.8 0.042 9E-07 55.0 2.7 23 157-179 1-23 (187)
462 PRK09580 sufC cysteine desulfu 93.8 0.28 6.1E-06 52.0 9.3 24 155-178 27-50 (248)
463 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.074 1.6E-06 54.8 4.5 23 155-177 29-51 (213)
464 cd02025 PanK Pantothenate kina 93.7 0.043 9.3E-07 56.9 2.8 25 157-181 1-25 (220)
465 PRK14247 phosphate ABC transpo 93.7 0.35 7.7E-06 51.3 9.9 25 155-179 29-53 (250)
466 PRK14249 phosphate ABC transpo 93.7 0.47 1E-05 50.4 10.8 26 155-180 30-55 (251)
467 PRK13765 ATP-dependent proteas 93.7 0.078 1.7E-06 63.3 5.1 74 128-210 27-101 (637)
468 cd00071 GMPK Guanosine monopho 93.7 0.044 9.6E-07 52.1 2.5 27 157-183 1-27 (137)
469 cd03278 ABC_SMC_barmotin Barmo 93.6 0.36 7.8E-06 49.1 9.3 21 157-177 24-44 (197)
470 cd03285 ABC_MSH2_euk MutS2 hom 93.6 0.076 1.6E-06 55.1 4.4 25 153-177 28-52 (222)
471 COG0714 MoxR-like ATPases [Gen 93.6 0.082 1.8E-06 58.7 5.0 51 132-186 24-74 (329)
472 COG1102 Cmk Cytidylate kinase 93.6 0.054 1.2E-06 51.4 2.9 24 157-180 2-25 (179)
473 PRK14723 flhF flagellar biosyn 93.6 0.79 1.7E-05 55.5 13.3 26 155-180 185-210 (767)
474 cd01428 ADK Adenylate kinase ( 93.6 0.5 1.1E-05 47.9 10.4 22 158-179 2-23 (194)
475 PLN03186 DNA repair protein RA 93.6 0.35 7.5E-06 53.4 9.7 54 137-190 105-164 (342)
476 TIGR02322 phosphon_PhnN phosph 93.6 0.053 1.2E-06 54.3 3.1 25 156-180 2-26 (179)
477 PF01078 Mg_chelatase: Magnesi 93.6 0.083 1.8E-06 53.2 4.4 43 131-177 2-44 (206)
478 KOG1532 GTPase XAB1, interacts 93.6 0.086 1.9E-06 54.2 4.4 32 154-185 18-49 (366)
479 PRK13657 cyclic beta-1,2-gluca 93.6 0.27 5.8E-06 59.5 9.7 25 155-179 361-385 (588)
480 PRK14528 adenylate kinase; Pro 93.6 0.19 4.1E-06 50.7 7.0 24 156-179 2-25 (186)
481 cd02023 UMPK Uridine monophosp 93.5 0.049 1.1E-06 55.6 2.8 23 157-179 1-23 (198)
482 PRK14269 phosphate ABC transpo 93.5 0.46 1E-05 50.3 10.3 24 155-178 28-51 (246)
483 COG0529 CysC Adenylylsulfate k 93.5 0.1 2.2E-06 50.4 4.5 38 153-190 21-58 (197)
484 cd03250 ABCC_MRP_domain1 Domai 93.5 0.76 1.6E-05 47.0 11.6 26 154-179 30-55 (204)
485 COG0396 sufC Cysteine desulfur 93.5 0.2 4.4E-06 50.6 6.8 63 224-286 150-216 (251)
486 PRK05057 aroK shikimate kinase 93.5 0.062 1.4E-06 53.3 3.3 26 155-180 4-29 (172)
487 PRK05342 clpX ATP-dependent pr 93.5 0.084 1.8E-06 59.9 4.7 52 132-183 71-136 (412)
488 PF00625 Guanylate_kin: Guanyl 93.4 0.08 1.7E-06 53.2 4.1 35 155-189 2-36 (183)
489 PRK13543 cytochrome c biogenes 93.4 0.51 1.1E-05 48.7 10.2 24 155-178 37-60 (214)
490 PRK09280 F0F1 ATP synthase sub 93.4 0.37 8E-06 54.9 9.7 92 156-249 145-251 (463)
491 PRK11174 cysteine/glutathione 93.4 0.29 6.4E-06 59.2 9.7 34 155-190 376-409 (588)
492 cd03251 ABCC_MsbA MsbA is an e 93.4 0.41 8.8E-06 50.2 9.6 25 155-179 28-52 (234)
493 PRK14530 adenylate kinase; Pro 93.4 0.06 1.3E-06 55.7 3.2 23 157-179 5-27 (215)
494 cd03283 ABC_MutS-like MutS-lik 93.4 0.33 7.1E-06 49.5 8.5 23 156-178 26-48 (199)
495 TIGR00764 lon_rel lon-related 93.4 0.12 2.5E-06 62.0 6.0 58 131-192 17-75 (608)
496 PRK13975 thymidylate kinase; P 93.4 0.066 1.4E-06 54.5 3.4 26 156-181 3-28 (196)
497 TIGR02525 plasmid_TraJ plasmid 93.3 0.24 5.2E-06 55.3 8.0 94 156-256 150-245 (372)
498 PRK05439 pantothenate kinase; 93.3 0.096 2.1E-06 56.7 4.7 29 153-181 84-112 (311)
499 PF03215 Rad17: Rad17 cell cyc 93.3 0.085 1.9E-06 61.5 4.6 60 128-189 15-77 (519)
500 PRK10751 molybdopterin-guanine 93.3 0.086 1.9E-06 51.9 3.9 29 154-182 5-33 (173)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-131 Score=1252.10 Aligned_cols=933 Identities=37% Similarity=0.603 Sum_probs=786.7
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccccccchhhHHHHHhh-
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEER- 79 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~- 79 (966)
|+.|++++++||++|+|||||||++||+|+|||+||+||+||+++++++|+||||+|||+|||+|+|.||++|++++.+
T Consensus 52 g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~ 131 (1153)
T PLN03210 52 SQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK 131 (1153)
T ss_pred CCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCCCCceEEE
Q 046086 80 FPEMRKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGSAGVCKLG 159 (966)
Q Consensus 80 ~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~ 159 (966)
..+++++||+||++||+++||++..+++|+++|++||++|.+++..+++.+.+++|||+.+++++.+++..+.+++++|+
T Consensus 132 ~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvg 211 (1153)
T PLN03210 132 TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVG 211 (1153)
T ss_pred chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEE
Confidence 45699999999999999999999877999999999999999999988888899999999999999999988788899999
Q ss_pred EeecCCCchhHHHHHHHHHhhccCCceEEEEee--hhh---hc------cCCHHHHHHHHHHHHhCCCCCCCChhhhHHH
Q 046086 160 IWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNV--QEA---QE------NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNF 228 (966)
Q Consensus 160 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~---~~------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 228 (966)
||||||+||||||+++|+++..+|++.+|+... +.. .. ......++++++.++........ .....
T Consensus 212 I~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~ 288 (1153)
T PLN03210 212 IWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGA 288 (1153)
T ss_pred EEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHH
Confidence 999999999999999999999999999998642 111 10 01123566777777665432211 11256
Q ss_pred HHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeeccCChhhHHHHHhhhhcCCC
Q 046086 229 QSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKELLDVDALKLFSRRAFGED 308 (966)
Q Consensus 229 l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 308 (966)
++++++++|+||||||||+.++++.+.....|+++||+||||||+++++..++++++|+|+.|+++||++||+++||++.
T Consensus 289 ~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~ 368 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN 368 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence 78889999999999999999999999998889999999999999999998878889999999999999999999999988
Q ss_pred CCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCCh-hhHhHhhhcccc
Q 046086 309 DPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDD-HEQGIFLDISCF 387 (966)
Q Consensus 309 ~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f 387 (966)
.+++++.+++++|+++|+|+||||+++|+.|++++..+|+.++++++..++..|.++|++||++|++ .+|.||+++|||
T Consensus 369 ~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~f 448 (1153)
T PLN03210 369 SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACL 448 (1153)
T ss_pred CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhh
Confidence 7778899999999999999999999999999999999999999999988888999999999999986 599999999999
Q ss_pred cCCCCHHHHHHHHhHcCCChhcchhhhhcCcceeEecCEEEecHHHHHHHHHHhhccccCCCCcceEecchhhHHHHhhc
Q 046086 388 LVGEDRDQVMRFLNSCGFFAEVGLSVRVDKSLITIDYNTIRMHDFLRDMGREIVQKESIHHPGERSRLWHYKDIYEVLTR 467 (966)
Q Consensus 388 ~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~~~~~l~~ 467 (966)
|.+.+.+.+..++..+++.++.+++.|++++||++..+++.|||++|+||++++++++ .+|++++++|+++|+++++..
T Consensus 449 f~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~ 527 (1153)
T PLN03210 449 FNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLED 527 (1153)
T ss_pred cCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987 789999999999999999999
Q ss_pred cccccceeeeecccccccceeeecchhhcCCCCCceEEEecCCCc----cccccCCCCC---CceeEEEecCCCCcccc-
Q 046086 468 NMGTTAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKC----MLSHFKGVPF---TDVRYFEWHEFPLKTLN- 539 (966)
Q Consensus 468 ~~~~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~----~l~~l~~~~~---~~L~~L~l~~~~l~~lp- 539 (966)
++|+..+++|++|++... ...+...+|.+|++|++|+++++... ....+|.++. .+||+|+|.+|+++.+|
T Consensus 528 ~~g~~~v~~i~l~~~~~~-~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~ 606 (1153)
T PLN03210 528 NTGTKKVLGITLDIDEID-ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS 606 (1153)
T ss_pred CcccceeeEEEeccCccc-eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC
Confidence 999999999999999987 78899999999999999999865211 1134666544 68999999999999999
Q ss_pred -cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEE
Q 046086 540 -IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVL 618 (966)
Q Consensus 540 -~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 618 (966)
+.+.+|++|+|++|+++.+|.++..+++|+.|+|++|..+..+|+++.+++|+.|+|++|..+..+|.+++++++|+.|
T Consensus 607 ~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 607 NFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 8889999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccccc--------------------
Q 046086 619 DLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIE-------------------- 678 (966)
Q Consensus 619 ~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~-------------------- 678 (966)
++++|..++.+|..+++++|+.|++++|..++.+|... .+|++|++++|.++.+|..+.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 99999999999998899999999999999888888654 358888888888777775321
Q ss_pred ----------CCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccc----------cCCC-------CC
Q 046086 679 ----------CLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEIS----------SSCN-------RE 731 (966)
Q Consensus 679 ----------~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~----------~~~~-------~~ 731 (966)
..++|+.|+|++|.....+|.+++++++|+.|++++|+.++.+|... ..|. .+
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence 12356677777777777777777777777777777777777666532 1111 12
Q ss_pred CCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCC---CCcceeecccCcccccccCCC-------C----
Q 046086 732 GSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELP---RNLYHLEAHHCTLLEALSGFS-------L---- 797 (966)
Q Consensus 732 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~~~~c~~L~~L~~l~-------l---- 797 (966)
.+|+.|+|++|.++.+|.++..+++|+.|+|++|+.+..+|..+ .+|+.|++++|.+|+.+..-. +
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~ 925 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI 925 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence 37889999999999999999999999999999999999888755 456677899999887553211 1
Q ss_pred -----------ccCcee------ec-----ceeecCCCCCCCCccccCCCcEEE-EEcCCCCCCCCCceeeEEEEEEEee
Q 046086 798 -----------THNNKW------IH-----RRMYFPGNEIPKWFRYQSMGSSVT-LEMPPTGFFSNKKLMGFAVCAIVAF 854 (966)
Q Consensus 798 -----------s~N~l~------~~-----~~~~~p~~~iP~~~~~~~~~~~l~-~~lp~~~~~~~~~~~~~~~~~v~~~ 854 (966)
..||+- .. ..+++||.++|.||.|++.+.+++ +.+|+.|. ...+.||++|+|+++
T Consensus 926 ~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~--~~~~~~f~~c~v~~~ 1003 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP--CQPFFRFRACAVVDS 1003 (1153)
T ss_pred cccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCccc--CCCccceEEEEEEec
Confidence 123321 11 257899999999999999999997 99999997 678999999999988
Q ss_pred cCCCCCCCCccCcceeeccCCCceeeeeeeccccCCceecCccccccccccccCCCeEEEEEEecCcccc-c-ccc---c
Q 046086 855 RDQHHDSDSRYSGHYEYDRKDNLYSLDCTWKVKSEGCYRDLRSWYFGTISSYVRSEHVFLGYYLFDSVEL-G-KYY---D 929 (966)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~s~h~~~~~~~~~~~~~-~-~~~---~ 929 (966)
....... ..-.+.|.|++..+.+.++. ...++|+|+.|....+.-. . ... +
T Consensus 1004 ~~~~~~~------------~~~~~~~~c~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1059 (1153)
T PLN03210 1004 ESFFIIS------------VSFDIQVCCRFIDRLGNHFD------------SPYQPHVFSVTKKGSHLVIFDCCFPLNED 1059 (1153)
T ss_pred CccccCC------------CceeEEEEEEEECCCCCccc------------cCCCceeEeeeccccceEEeccccccccc
Confidence 7552210 01124677777664444322 1466777777763211100 0 000 0
Q ss_pred ccccceeeeeeeeeeecc-----ceEEEEeeeEEEeecCCC
Q 046086 930 EVSQASFEIHRLIGEPLG-----CCEVKKCGIHFVHAQDST 965 (966)
Q Consensus 930 ~~~~~~~~~~~~~~~f~~-----~~~v~~cg~~~~~~~~~~ 965 (966)
........+++++++|.+ .++|++|||+++|+++..
T Consensus 1060 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1060 NAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence 000112345566777765 459999999999965543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-57 Score=545.44 Aligned_cols=590 Identities=23% Similarity=0.332 Sum_probs=430.1
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH---hhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK---TSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
||.+..++++...|..++ .++++|+||||+||||||+.++++ +..+|+.++|+. +++......++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999997643 389999999999999999999994 678999999998 45678889999999998
Q ss_pred HhCCCC--CCCChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhc-CCcceeEee
Q 046086 212 LLNDRN--VKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSN-CLVDQIYEV 288 (966)
Q Consensus 212 l~~~~~--~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~l 288 (966)
+..... .....+.....+.+.|+++|++|||||||+..+|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 876443 22334678888999999999999999999999999999999988889999999999999998 788889999
Q ss_pred ccCChhhHHHHHhhhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCC-CHHHHHHHHHHHhcC-----C--C
Q 046086 289 KELLDVDALKLFSRRAFGED-DPNASYKELTQEAVKYAKGVPLALKVLGSFLFGR-RKEEWKSAMKKMEIV-----P--H 359 (966)
Q Consensus 289 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~--~ 359 (966)
+.|+++|||.||++.||... ...+...++|++++++|+|+|||++++|+.|+.+ +..+|+.+...+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3334588999999999999999999999999995 567999999988654 1 3
Q ss_pred chHHHHHHHhhcCCChhhHhHhhhcccccCCC--CHHHHHHHHhHcCCCh------------hcchhhhhcCcceeEec-
Q 046086 360 MEIQEVLKISYDGLDDHEQGIFLDISCFLVGE--DRDQVMRFLNSCGFFA------------EVGLSVRVDKSLITIDY- 424 (966)
Q Consensus 360 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~------------~~~l~~L~~~sLi~~~~- 424 (966)
..|..++++|||.||++.|.||+|||.||+++ +++.++.+|+++||+. ...+.+|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999998 5788999999999864 33489999999999874
Q ss_pred ----CEEEecHHHHHHHHHHhhccccCCCCcceEecchh-hHHHHhhccccccceeeeecccccccceeeecchhhcCCC
Q 046086 425 ----NTIRMHDFLRDMGREIVQKESIHHPGERSRLWHYK-DIYEVLTRNMGTTAIQAISLDMSKVNNEIRINRSTFSKMP 499 (966)
Q Consensus 425 ----~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~ 499 (966)
.++.|||++|+||.+++.+.+..... ...... ...+ ..+......++.+++..+... . .+.. ...+
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~-~---~~~~-~~~~ 545 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIE-H---IAGS-SENP 545 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccc-cccccchhheeEEEEeccchh-h---ccCC-CCCC
Confidence 78999999999999999844322111 111110 0001 122233445666666554432 1 1111 2344
Q ss_pred CCceEEEecCCCccccccCCCCC---CceeEEEecCCC-Ccccc---cccccceEeecCCCCCcccccccccccccceec
Q 046086 500 KLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFP-LKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEID 572 (966)
Q Consensus 500 ~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~-l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~ 572 (966)
+|++|-+.+|.. .+..++...+ +.|++||+++|. +..|| ..+-+|++|+|+++.++.+|.++++|..|.+||
T Consensus 546 ~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 799999988732 1355666544 899999999765 78899 779999999999999999999999999999999
Q ss_pred ccCCCCCCCCCC-CCCCccCcEEeccCcc--CCccccccccCCCcccEEeccCCCCCcccCCccCCCccc----EEEecC
Q 046086 573 LHGSKQLSKLPD-LSQARNLERLKLDGCS--SLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLF----ELRLWG 645 (966)
Q Consensus 573 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~----~L~L~~ 645 (966)
+..+..+..+|. ...+++|++|.+..-. .....-..+.++.+|+.|....... ..+-+...+..|. .+.+.+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc
Confidence 999988777776 4559999999997643 1112223456666666666653322 1011111222222 223223
Q ss_pred CCCCCCCccc-ccCcccEEeecccccccccc-cc-----cC-CCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCC
Q 046086 646 CLNLKNFPEI-SSSHIHFLDLYECGIEDMPL-SI-----EC-LSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSN 717 (966)
Q Consensus 646 ~~~l~~~p~~-~~~~L~~L~L~~n~i~~lp~-~~-----~~-l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 717 (966)
|......+.. ...+|+.|.+.++.+.+... +. .. ++++..+...+|..... +.+..-.++|+.|.+.+|..
T Consensus 704 ~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 704 CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEEEEecccc
Confidence 2222222111 12268888888877764322 11 11 33444555555533322 23334568888888888887
Q ss_pred CccccccccCCCCCCCccEEEcCCCCcc
Q 046086 718 LKRFPEISSSCNREGSTEVLHLKGNNLE 745 (966)
Q Consensus 718 l~~~p~~~~~~~~~~~L~~L~Ls~n~l~ 745 (966)
.+.+......+. .++.+.+..+.+.
T Consensus 783 ~e~~i~~~k~~~---~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 783 LEDIIPKLKALL---ELKELILPFNKLE 807 (889)
T ss_pred cccCCCHHHHhh---hcccEEecccccc
Confidence 766655444332 3444444444444
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-37 Score=339.82 Aligned_cols=268 Identities=30% Similarity=0.460 Sum_probs=214.7
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH--hhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhC
Q 046086 137 VECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK--TSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLN 214 (966)
Q Consensus 137 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 214 (966)
||.++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+... .......+.++++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~----~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS----KNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE----S-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc----cccccccccccccccccc
Confidence 789999999999876688999999999999999999999998 88999999999854 333447788888888877
Q ss_pred CCC---CCCChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCc-ceeEeecc
Q 046086 215 DRN---VKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLV-DQIYEVKE 290 (966)
Q Consensus 215 ~~~---~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~~ 290 (966)
... ...+.......+.+.|.++++||||||||+..+|+.+...++....|++||||||+..++..... ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 633 34566778899999999999999999999999998888777777789999999999988876544 67899999
Q ss_pred CChhhHHHHHhhhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHhHhhhhcC-CCHHHHHHHHHHHhcCC------CchH
Q 046086 291 LLDVDALKLFSRRAFGED-DPNASYKELTQEAVKYAKGVPLALKVLGSFLFG-RRKEEWKSAMKKMEIVP------HMEI 362 (966)
Q Consensus 291 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~-~~~~~w~~~l~~l~~~~------~~~i 362 (966)
|+.+||++||.+.++... .......+.+++|+++|+|+||||+++|++|+. .+..+|+.+++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 233445677999999999999999999999955 35678999988766443 4679
Q ss_pred HHHHHHhhcCCChhhHhHhhhcccccCCCC--HHHHHHHHhHcCCChh
Q 046086 363 QEVLKISYDGLDDHEQGIFLDISCFLVGED--RDQVMRFLNSCGFFAE 408 (966)
Q Consensus 363 ~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~ 408 (966)
..++..||+.|+++.|+||+++|+||.+.. .+.++.+|.++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999874 8999999999988754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.7e-30 Score=329.49 Aligned_cols=331 Identities=21% Similarity=0.268 Sum_probs=248.7
Q ss_pred CCCCcceEecchhhHHHHhhcccc--ccceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--
Q 046086 447 HHPGERSRLWHYKDIYEVLTRNMG--TTAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF-- 522 (966)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~l~~~~~--~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-- 522 (966)
.+|.++.+.|+..+.+........ ...|.. ||++.+. .....+..|..+++|++|++++|... ..+|...+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~--L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~ 116 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVS--IDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTT 116 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEE--EEecCCC-ccccCChHHhCCCCCCEEECCCCccC--CcCChHHhcc
Confidence 345556667765433222222222 233444 4444443 22344678999999999999998432 25666544
Q ss_pred -CceeEEEecCCCCc-ccc-cccccceEeecCCCCCc-ccccccccccccceecccCCCCCCCCCC-CCCCccCcEEecc
Q 046086 523 -TDVRYFEWHEFPLK-TLN-IRAENLVSLKLPGSNVE-QLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLD 597 (966)
Q Consensus 523 -~~L~~L~l~~~~l~-~lp-~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 597 (966)
.+|++|++++|.+. .+| ..+.+|++|+|++|.+. .+|..+.++++|++|+|++|.+...+|. ++++++|++|+|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 88999999999875 456 67889999999999887 6788899999999999999988877774 8889999999999
Q ss_pred CccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccc-cc
Q 046086 598 GCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE-DM 673 (966)
Q Consensus 598 ~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~-~l 673 (966)
+|...+.+|..++++++|++|+|++|...+.+|..+ .+++|++|++++|...+.+|..+.. +|++|++++|.+. .+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 998888888889999999999999888888888877 7888999999988877777766554 7888888888886 56
Q ss_pred cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhh
Q 046086 674 PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIR 752 (966)
Q Consensus 674 p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~ 752 (966)
|.++.++++|+.|+|++|.+.+.+|..+.++++|+.|++++|...+.+|..+..++ +|+.|+|++|.++ .+|..+.
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP---RLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC---CCCEEECcCCCCcCcCChHHh
Confidence 77888888888888888888888888888888888888888877777776665544 7788888888776 6777777
Q ss_pred cCCCCCEEeecCCCCccccCCCC---CCcceeeccc
Q 046086 753 HLSKLKSLDISYCEWLHTLPELP---RNLYHLEAHH 785 (966)
Q Consensus 753 ~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~~~~ 785 (966)
.+++|+.|+|++|++.+.+|..+ ++|+.|++.+
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 77778888887777776666532 3445555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.2e-28 Score=314.36 Aligned_cols=324 Identities=20% Similarity=0.225 Sum_probs=235.7
Q ss_pred cceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCc-ccc---cccccceE
Q 046086 472 TAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLK-TLN---IRAENLVS 547 (966)
Q Consensus 472 ~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~-~lp---~~l~~L~~ 547 (966)
..++.+. ++.+.....++...|.++++|++|++++|... ..+|.....+|++|++++|.+. .+| ..+.+|++
T Consensus 93 ~~L~~L~--Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTIN--LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEE--CCCCccCCcCChHHhccCCCCCEEECcCCccc--cccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 3445444 44443123577777889999999999988543 2345444588888888888876 456 66788888
Q ss_pred eecCCCCCc-ccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCC
Q 046086 548 LKLPGSNVE-QLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCES 625 (966)
Q Consensus 548 L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 625 (966)
|+|++|.+. .+|..+.++++|++|+|++|.+...+| .++++++|++|+|++|...+.+|..++++++|++|++++|..
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 888888876 677888888888888888888877777 478888888888888888888888888888888888888887
Q ss_pred CcccCCcc-CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccc-cccccccCCCCCCEEeccCCCCcccccccc
Q 046086 626 LRSLPDTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHNCTRLEYIKSSI 701 (966)
Q Consensus 626 l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l 701 (966)
.+.+|..+ .+++|++|++++|...+.+|..+.. +|+.|++++|.+. .+|..+.++++|+.|++++|.+.+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 77788776 7788888888888777777765543 7888888888876 567777888888888888888777778778
Q ss_pred cCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCCCCccccCCC---CCC
Q 046086 702 FKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYCEWLHTLPEL---PRN 777 (966)
Q Consensus 702 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~---~~~ 777 (966)
..+++|+.|++++|...+.+|..+..+. +|+.|+|++|+++ .+|.++..+++|+.|++++|++.+.+|.. .++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~---~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHN---NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCC---CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 8888888888888777777776665544 6777777777766 56666666666666666666666665542 245
Q ss_pred cceeecccCc----------ccccccCCCCccCce
Q 046086 778 LYHLEAHHCT----------LLEALSGFSLTHNNK 802 (966)
Q Consensus 778 L~~L~~~~c~----------~L~~L~~l~ls~N~l 802 (966)
|+.|++++|. .++.|..|++++|.+
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 5555554432 234444555666655
No 6
>PLN03194 putative disease resistance protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=239.55 Aligned_cols=111 Identities=33% Similarity=0.510 Sum_probs=100.1
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccc-cccchhhHHHHHhh
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQ-TGIFGNLFSKLEER 79 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~-~g~~~~~~~~~~~~ 79 (966)
|+.|.++|.+||++|+++|||||++||+|+|||+||++|++|+ ++||||||+|||+|||+| .|..
T Consensus 67 G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~---------- 132 (187)
T PLN03194 67 GDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC---------- 132 (187)
T ss_pred CCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------
Confidence 8899999999999999999999999999999999999999984 479999999999999997 4432
Q ss_pred ChhhHHHHHHHHHHHhhccCCCCCC-CCchhHHHHHHHHhhhhcccc
Q 046086 80 FPEMRKRWRNALTEAANLSGFNSHV-IRPESKLIEEIADEVLKRLDD 125 (966)
Q Consensus 80 ~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~~~i~~i~~~v~~~l~~ 125 (966)
..+++++||+||++||+++|+++.. +++|+++|++|++.|.++|..
T Consensus 133 ~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 133 PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999997753 588999999999999988753
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-28 Score=260.69 Aligned_cols=321 Identities=21% Similarity=0.156 Sum_probs=264.9
Q ss_pred eeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc----cccccceEe
Q 046086 475 QAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN----IRAENLVSL 548 (966)
Q Consensus 475 ~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp----~~l~~L~~L 548 (966)
..-.||++.+. .-.++...|.++++|+.+++.+| .+..+|.... .+|+.|++.+|.+.++. ..+..|++|
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN---ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccc---hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 34467888876 77889999999999999999998 5577777665 77999999999999887 667889999
Q ss_pred ecCCCCCcccccc-cccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCC
Q 046086 549 KLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESL 626 (966)
Q Consensus 549 ~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l 626 (966)
||+.|.|+.+|.. +..-.++++|+|++|++...-. .|.++.+|-.|.|+.|.+....+.+|.+|++|+.|+|..|.+-
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 9999999999866 6666899999999999766544 4999999999999999988887888999999999999988643
Q ss_pred cccCCcc-CCCcccEEEecCCCCCCCCccccc--CcccEEeecccccccccc-cccCCCCCCEEeccCCCCccccccccc
Q 046086 627 RSLPDTI-CSESLFELRLWGCLNLKNFPEISS--SHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIF 702 (966)
Q Consensus 627 ~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~ 702 (966)
..--..+ ++++|+.|.|..|...+--...+. .+++.|+|..|+++.+.. |+.+|+.|+.|+|++|.+...-++++.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 2212223 899999999999976543333332 389999999999998854 789999999999999999888888889
Q ss_pred CCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccccCC------CC
Q 046086 703 KLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTLPE------LP 775 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~------~~ 775 (966)
-.++|+.|+|++|....--+..+..+ ..|+.|+|++|.++.+-+ .+..+++|+.|||++|.+...+.+ .+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L---~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVL---SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hcccceeEeccccccccCChhHHHHH---HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 99999999999966544434444443 389999999999998876 578899999999999999877754 35
Q ss_pred CCcceeeccc----------CcccccccCCCCccCce
Q 046086 776 RNLYHLEAHH----------CTLLEALSGFSLTHNNK 802 (966)
Q Consensus 776 ~~L~~L~~~~----------c~~L~~L~~l~ls~N~l 802 (966)
++|+.|.+.+ +..|+.|+.|||.+|.+
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 6788888766 45688899999999987
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-27 Score=253.51 Aligned_cols=298 Identities=19% Similarity=0.212 Sum_probs=249.6
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L 545 (966)
.++.+.|-.+. ...+..+.++-++.||+|+|+.| .+..++...+ .++++|++++|.++.+. ..+.+|
T Consensus 126 hl~~L~L~~N~---I~sv~se~L~~l~alrslDLSrN---~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 126 HLEKLDLRHNL---ISSVTSEELSALPALRSLDLSRN---LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ceeEEeeeccc---cccccHHHHHhHhhhhhhhhhhc---hhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 45655555444 45788999999999999999999 4456665555 78999999999999988 567799
Q ss_pred eEeecCCCCCcccccc-cccccccceecccCCCCCCC-CCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 546 VSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSK-LPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 546 ~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
.+|.|+.|+|+.+|.. |++|++|+.|+|..|++-.. .-.|.++++|+.|.|..|.+...-...|..|.++++|+|+.|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 9999999999999876 77799999999999985433 225999999999999999888877889999999999999998
Q ss_pred CCCcccCCcc-CCCcccEEEecCCCCCCCCccc--ccCcccEEeecccccccccc-cccCCCCCCEEeccCCCCcccccc
Q 046086 624 ESLRSLPDTI-CSESLFELRLWGCLNLKNFPEI--SSSHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKS 699 (966)
Q Consensus 624 ~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~--~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~ 699 (966)
+....-..++ ++++|+.|+||+|.+...-++. +..+|++|+|++|+|+++|+ ++..|..|+.|+|++|.+...-..
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 7654444444 9999999999999876654443 33489999999999999965 689999999999999987766666
Q ss_pred cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccccCCCCC
Q 046086 700 SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTLPELPR 776 (966)
Q Consensus 700 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~~~~ 776 (966)
.|..+++|+.|||++|.....+.+.......+++|+.|+|.+|++.+||. .+..++.|++|+|.+|.+...-|+.+.
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 78899999999999988877777665556667799999999999999995 889999999999999997766665443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.1e-27 Score=257.08 Aligned_cols=336 Identities=19% Similarity=0.239 Sum_probs=265.1
Q ss_pred cceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc---cccccce
Q 046086 472 TAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN---IRAENLV 546 (966)
Q Consensus 472 ~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp---~~l~~L~ 546 (966)
..|+++. ++.+.....--|.....|++++-|.|... ++..+|..+. .+|.+|++.+|.+.++- ..++.|+
T Consensus 7 pFVrGvD--fsgNDFsg~~FP~~v~qMt~~~WLkLnrt---~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVD--FSGNDFSGDRFPHDVEQMTQMTWLKLNRT---KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ceeeccc--ccCCcCCCCcCchhHHHhhheeEEEechh---hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3456654 44443222334566788999999999875 5567777666 88999999999988887 6788899
Q ss_pred EeecCCCCCc--ccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 547 SLKLPGSNVE--QLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 547 ~L~L~~n~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
.+.++.|+++ .+|..+..|..|..||||+|+ +.+.| .+...+|+-.|+|++|++-....+-+-+|+.|-+|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999999988 689999999999999999998 45566 6899999999999998765544456789999999999976
Q ss_pred CCCcccCCcc-CCCcccEEEecCCCCC----CCCcccccCcccEEeecccccc--cccccccCCCCCCEEeccCCCCccc
Q 046086 624 ESLRSLPDTI-CSESLFELRLWGCLNL----KNFPEISSSHIHFLDLYECGIE--DMPLSIECLSKLNSLDIHNCTRLEY 696 (966)
Q Consensus 624 ~~l~~lp~~~-~l~~L~~L~L~~~~~l----~~~p~~~~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~ 696 (966)
. +..+|+.+ .+..|++|.|++|+.. ..+|. ..+|+.|.+++++-+ .+|.++..+.+|..++||.| .+..
T Consensus 161 r-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs--mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~ 236 (1255)
T KOG0444|consen 161 R-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS--MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPI 236 (1255)
T ss_pred h-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc--chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCc
Confidence 4 78899888 8899999999999753 33443 226899999998765 88999999999999999998 5678
Q ss_pred ccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCc-cccCCCC
Q 046086 697 IKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWL-HTLPELP 775 (966)
Q Consensus 697 ~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l-~~lp~~~ 775 (966)
+|..+.++++|+.|+||+|.. +.+....+. ..+|++|+||.|+++.+|+.+.+|++|+.|.+.+|++. ..+|..+
T Consensus 237 vPecly~l~~LrrLNLS~N~i-teL~~~~~~---W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKI-TELNMTEGE---WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred chHHHhhhhhhheeccCcCce-eeeeccHHH---HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 899999999999999999654 333333222 23899999999999999999999999999999999975 5677766
Q ss_pred CCcceeecc------------cCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 776 RNLYHLEAH------------HCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 776 ~~L~~L~~~------------~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
+.|..|... +......|..|.+++|.| -.+|+.+..++.+..+++.
T Consensus 313 GKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL----------iTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL----------ITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred hhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce----------eechhhhhhcCCcceeecc
Confidence 666555532 222233455577999998 6788999888888888873
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.9e-26 Score=249.70 Aligned_cols=294 Identities=21% Similarity=0.235 Sum_probs=232.9
Q ss_pred cccceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc----cccc
Q 046086 470 GTTAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN----IRAE 543 (966)
Q Consensus 470 ~~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp----~~l~ 543 (966)
....++.+.+.-+..+ ..-+++ .+-+|..|.+|+|++| .+...|..+. +++-.|++++|.++++| .++.
T Consensus 76 ~Lp~LRsv~~R~N~LK-nsGiP~-diF~l~dLt~lDLShN---qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLK-NSGIPT-DIFRLKDLTILDLSHN---QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred cchhhHHHhhhccccc-cCCCCc-hhcccccceeeecchh---hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 3444454444444333 223444 3446888888888888 5566777766 78888888888888888 6677
Q ss_pred cceEeecCCCCCcccccccccccccceecccCCCCCCC-CCCCCCCccCcEEeccCccC-CccccccccCCCcccEEecc
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSK-LPDLSQARNLERLKLDGCSS-LMETHSSIQYLNKLEVLDLR 621 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~~~~-~~~~~~~l~~l~~L~~L~L~ 621 (966)
.|-.||||+|+++.+|..+..|.+|++|+|++|.+... +..+..+++|+.|.+++.+. +..+|.++..|.+|+.+|++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 88888888888888888888888888888888875321 12345677788888887543 34588999999999999999
Q ss_pred CCCCCcccCCcc-CCCcccEEEecCCCCCCCCc-ccccCcccEEeecccccccccccccCCCCCCEEeccCCCC-ccccc
Q 046086 622 LCESLRSLPDTI-CSESLFELRLWGCLNLKNFP-EISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTR-LEYIK 698 (966)
Q Consensus 622 ~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p-~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~-~~~~p 698 (966)
.| .+..+|+.+ .+.+|+.|+||+|.+.+.-- .....+|++|+|+.|+++.+|..+..|++|+.|.+.+|++ ..-+|
T Consensus 231 ~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 231 EN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred cc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc
Confidence 66 467788877 89999999999997654211 1122289999999999999999999999999999999986 46789
Q ss_pred ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCC
Q 046086 699 SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPE 773 (966)
Q Consensus 699 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~ 773 (966)
+.+++|.+|+.+..++ +.++.+|+.+..|. .|+.|.|+.|.+..+|+.|.-|+.|+.|+|..|+.+-..|.
T Consensus 310 SGIGKL~~Levf~aan-N~LElVPEglcRC~---kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAAN-NKLELVPEGLCRCV---KLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cchhhhhhhHHHHhhc-cccccCchhhhhhH---HHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999987 67889999999888 89999999999999999999999999999999998766554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.4e-24 Score=225.09 Aligned_cols=324 Identities=22% Similarity=0.287 Sum_probs=240.2
Q ss_pred chhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc---cccccceEeecCCCCCccccccccccc
Q 046086 492 RSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLV 566 (966)
Q Consensus 492 ~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~ 566 (966)
+.+.+.+..++.|+.++| ++..+|.... .+|+.|+++.|.+..+| +.+..|..|+..+|++.++|+++.++.
T Consensus 84 p~aig~l~~l~~l~vs~n---~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHN---KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred CHHHHHHHHHHHhhcccc---hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 334555666666666665 4455665554 67777788888877777 667777888888888888888888888
Q ss_pred ccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCC
Q 046086 567 NIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGC 646 (966)
Q Consensus 567 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~ 646 (966)
+|..+++.+|++....|+.-+++.|++|+...| .++.+|+.++.|.+|..|+|..|+ +..+|+.-++..|.+|.++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhccc
Confidence 888888888876666666555888888888775 577788888888888888888875 567886557888888888877
Q ss_pred CCCCCCcccccC---cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcc---
Q 046086 647 LNLKNFPEISSS---HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKR--- 720 (966)
Q Consensus 647 ~~l~~~p~~~~~---~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~--- 720 (966)
+ .+.+|..... +|..|||..|.++++|..+.-+.+|.+||+++|.+ ..+|.+++++ .|+.|.+.||+.-+.
T Consensus 239 ~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 239 Q-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred H-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHH
Confidence 5 4555654443 78999999999999999999999999999999965 5678889999 899999888762100
Q ss_pred ---------------------------------------cccc-------------------------------------
Q 046086 721 ---------------------------------------FPEI------------------------------------- 724 (966)
Q Consensus 721 ---------------------------------------~p~~------------------------------------- 724 (966)
+|+.
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 0000
Q ss_pred --------------------------------ccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccC
Q 046086 725 --------------------------------SSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 725 --------------------------------~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
...+..+++|..|+|++|-+..+|..++.+..|+.|++++|++ ..+|
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP 474 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLP 474 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccch
Confidence 0001112378888888888888888888888888888888864 3444
Q ss_pred CCC-------------CCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEEcCC
Q 046086 773 ELP-------------RNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLEMPP 834 (966)
Q Consensus 773 ~~~-------------~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~lp~ 834 (966)
+.. -.+..++.++..+++.|..||+.+|.+ ..||.-+++++++..+.+.=.|
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl----------q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL----------QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch----------hhCChhhccccceeEEEecCCc
Confidence 421 134555666777888899999999998 7899999999999988885444
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.5e-22 Score=210.18 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=92.1
Q ss_pred eecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc---cccccceEeecC
Q 046086 477 ISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN---IRAENLVSLKLP 551 (966)
Q Consensus 477 i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~ 551 (966)
..++.+.++ ...+ ++.++.+..|..|+..+| .+..+|++.+ .+|..|++.+|.++.+| ..++.|++||..
T Consensus 117 ~~l~~s~n~-~~el-~~~i~~~~~l~dl~~~~N---~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 117 VKLDCSSNE-LKEL-PDSIGRLLDLEDLDATNN---QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhccccc-eeec-CchHHHHhhhhhhhcccc---ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence 345555553 3333 334555666666666666 4455666555 55666666666666666 446666666666
Q ss_pred CCCCcccccccccccccceecccCCCCCCCCCCCCCC------------------------ccCcEEeccCccCCccccc
Q 046086 552 GSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQA------------------------RNLERLKLDGCSSLMETHS 607 (966)
Q Consensus 552 ~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l------------------------~~L~~L~L~~~~~~~~~~~ 607 (966)
.|-++.+|+.++.+.+|..|+|.+|+ +..+|.|.++ ++|..|||.+|+ +.+.|.
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pd 269 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPD 269 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCch
Confidence 66666666666666666666666665 3344555554 455555555543 445555
Q ss_pred cccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCC
Q 046086 608 SIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGC 646 (966)
Q Consensus 608 ~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~ 646 (966)
.+..+++|..||+++|. +..+|...+.-.|+.|-+.||
T Consensus 270 e~clLrsL~rLDlSNN~-is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNND-ISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred HHHHhhhhhhhcccCCc-cccCCcccccceeeehhhcCC
Confidence 55555666666666443 444555442225555555555
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.2e-19 Score=232.00 Aligned_cols=289 Identities=24% Similarity=0.331 Sum_probs=231.2
Q ss_pred CceeEEEecCCCC-------cccc----cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCcc
Q 046086 523 TDVRYFEWHEFPL-------KTLN----IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARN 590 (966)
Q Consensus 523 ~~L~~L~l~~~~l-------~~lp----~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~ 590 (966)
.+|++|.+..+.. -.+| ..+.+|+.|++.++.++.+|..+ .+.+|+.|+|++|++. .++ .+..+++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence 7888888865532 1244 33567999999999999999988 5799999999999854 455 5888999
Q ss_pred CcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccc-cCcccEEeeccc
Q 046086 591 LERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEIS-SSHIHFLDLYEC 668 (966)
Q Consensus 591 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~-~~~L~~L~L~~n 668 (966)
|+.|+|++|..+..+| .++.+++|+.|+|++|..+..+|..+ .+++|+.|++++|..++.+|... ..+|+.|++++|
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 9999999998888887 58899999999999999999999988 88999999999999999998764 338999999998
Q ss_pred cc-ccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccC-----CCCCCCccEEEcCCC
Q 046086 669 GI-EDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSS-----CNREGSTEVLHLKGN 742 (966)
Q Consensus 669 ~i-~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~-----~~~~~~L~~L~Ls~n 742 (966)
.. ..+|. ..++|+.|+|++|.+ ..+|..+ .+++|++|.+.++... .++..+.. ...+++|+.|+|++|
T Consensus 715 ~~L~~~p~---~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 715 SRLKSFPD---ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCcccccc---ccCCcCeeecCCCcc-ccccccc-cccccccccccccchh-hccccccccchhhhhccccchheeCCCC
Confidence 53 45554 256899999999974 5677655 6889999999875432 11111110 012348999999998
Q ss_pred C-ccccchHhhcCCCCCEEeecCCCCccccCCC--CCCcceeecccCccccc-------ccCCCCccCceeecceeecCC
Q 046086 743 N-LERIPESIRHLSKLKSLDISYCEWLHTLPEL--PRNLYHLEAHHCTLLEA-------LSGFSLTHNNKWIHRRMYFPG 812 (966)
Q Consensus 743 ~-l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~--~~~L~~L~~~~c~~L~~-------L~~l~ls~N~l~~~~~~~~p~ 812 (966)
. +..+|.+++++++|+.|+|++|..++.+|.. +++|+.|++++|..++. |..|++++|.+
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i---------- 858 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI---------- 858 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC----------
Confidence 5 5589999999999999999999989988874 67899999999988754 55678899988
Q ss_pred CCCCCCccccCCCcEEEE
Q 046086 813 NEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 813 ~~iP~~~~~~~~~~~l~~ 830 (966)
.++|.|+..++.+..+++
T Consensus 859 ~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred ccChHHHhcCCCCCEEEC
Confidence 688999888888888866
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.1e-19 Score=212.77 Aligned_cols=260 Identities=18% Similarity=0.187 Sum_probs=201.3
Q ss_pred cccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCccc
Q 046086 479 LDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQL 558 (966)
Q Consensus 479 Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~l 558 (966)
||++.+. ...+++. +. ++|+.|.+.+|. +..+|.. .++|++|++++|.++.+|..+.+|+.|+|++|.++.+
T Consensus 206 LdLs~~~-LtsLP~~-l~--~~L~~L~L~~N~---Lt~LP~l-p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 206 LNVGESG-LTTLPDC-LP--AHITTLVIPDNN---LTSLPAL-PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 277 (788)
T ss_pred EEcCCCC-CCcCCcc-hh--cCCCEEEccCCc---CCCCCCC-CCCCcEEEecCCccCcccCcccccceeeccCCchhhh
Confidence 4555553 3345443 32 479999999984 4556643 3789999999999999996678999999999999998
Q ss_pred ccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcc
Q 046086 559 WDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESL 638 (966)
Q Consensus 559 ~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L 638 (966)
|... .+|+.|++++|++. .+|. .+++|+.|+|++|.+.. +|.. ..+|+.|++++|.+ +.+|.. ..+|
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L-~~LP~l--p~~L 344 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL-TSLPTL--PSGL 344 (788)
T ss_pred hhch---hhcCEEECcCCccc-cccc--cccccceeECCCCcccc-CCCC---cccccccccccCcc-cccccc--cccc
Confidence 8643 57889999999754 5564 35789999999986554 5543 34678889998764 567752 3589
Q ss_pred cEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCC
Q 046086 639 FELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNL 718 (966)
Q Consensus 639 ~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l 718 (966)
+.|+|++|.+. .+|... .+|+.|++++|.++.+|.. ..+|+.|+|++|.+. .+|.. .++|+.|++++|. +
T Consensus 345 q~LdLS~N~Ls-~LP~lp-~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~-L 414 (788)
T PRK15387 345 QELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNR-L 414 (788)
T ss_pred ceEecCCCccC-CCCCCC-cccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCc-C
Confidence 99999998754 567543 4699999999999999864 367999999999765 46653 3689999999976 4
Q ss_pred ccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCC
Q 046086 719 KRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELP 775 (966)
Q Consensus 719 ~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~ 775 (966)
..+|..+ .+|+.|+|++|+|+.+|..+.++++|+.|+|++|++.+..|..+
T Consensus 415 ssIP~l~------~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 415 TSLPMLP------SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCCcch------hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5677532 27899999999999999999999999999999999987766543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=5.3e-19 Score=209.33 Aligned_cols=256 Identities=19% Similarity=0.168 Sum_probs=194.2
Q ss_pred CCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCcccccccccccccceecccCCCCC
Q 046086 500 KLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQL 579 (966)
Q Consensus 500 ~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~ 579 (966)
+-..|+++++ .+..+|..+..+|+.|++.+|.++.+|..+++|++|+|++|+|+.+|.. .++|+.|++++|.+.
T Consensus 202 ~~~~LdLs~~---~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 202 GNAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCcEEEcCCC---CCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 3557888887 4567888777889999999999999997789999999999999999864 468899999999744
Q ss_pred CCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCc
Q 046086 580 SKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSH 659 (966)
Q Consensus 580 ~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~ 659 (966)
.+|. ...+|+.|++++|.+. .+|. .+++|+.|+|++|.+ ..+|.. ..+|+.|++++|.. ..+|... .+
T Consensus 276 -~Lp~--lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L-~~Lp~l--p~~L~~L~Ls~N~L-~~LP~lp-~~ 343 (788)
T PRK15387 276 -HLPA--LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQL-ASLPAL--PSELCKLWAYNNQL-TSLPTLP-SG 343 (788)
T ss_pred -hhhh--chhhcCEEECcCCccc-cccc---cccccceeECCCCcc-ccCCCC--cccccccccccCcc-ccccccc-cc
Confidence 5554 2367889999998654 4554 357899999998864 456652 34688899998865 4566533 46
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEc
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHL 739 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~L 739 (966)
|+.|+|++|.++.+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.. ..+|... .+|+.|++
T Consensus 344 Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~L-t~LP~l~------s~L~~LdL 409 (788)
T PRK15387 344 LQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRL-TSLPVLP------SELKELMV 409 (788)
T ss_pred cceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcc-cCCCCcc------cCCCEEEc
Confidence 99999999999998864 357888899998765 46653 35799999999654 4566532 38999999
Q ss_pred CCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 740 KGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 740 s~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
++|.|+.+|.. ..+|+.|++++|++. .+|..+. .+..|..+++++|.|
T Consensus 410 S~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~-----------~L~~L~~LdLs~N~L 457 (788)
T PRK15387 410 SGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLI-----------HLSSETTVNLEGNPL 457 (788)
T ss_pred cCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHh-----------hccCCCeEECCCCCC
Confidence 99999999864 346788999999864 5665332 234455678888887
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.1e-18 Score=208.28 Aligned_cols=244 Identities=17% Similarity=0.232 Sum_probs=176.0
Q ss_pred CCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc-cccccceEeecCCCCCcccccccccccccceecccCCCC
Q 046086 500 KLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQ 578 (966)
Q Consensus 500 ~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~ 578 (966)
+...|+++++ ++..+|..+...|+.|++++|.++.+| ....+|++|++++|+++.+|..+. .+|+.|+|++|.+
T Consensus 179 ~~~~L~L~~~---~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKIL---GLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCC---CcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 3456777665 445666665677888888888888888 445688888888888888887654 4788888888875
Q ss_pred CCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCccccc
Q 046086 579 LSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISS 657 (966)
Q Consensus 579 ~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~ 657 (966)
. .+|. +. .+|+.|++++|.+. .+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++|... .+|....
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~ 324 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS-IRTLPAHLP-SGITHLNVQSNSLT-ALPETLP 324 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc-cccCcccch-hhHHHHHhcCCccc-cCCcccc
Confidence 4 5553 32 47888888877544 5666553 578888888875 445665442 46888888887654 4665555
Q ss_pred CcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEE
Q 046086 658 SHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVL 737 (966)
Q Consensus 658 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L 737 (966)
.+|+.|++++|.++.+|..+. ++|+.|+|++|++. .+|..+ .++|+.|+|++|+. ..+|..+.. +|+.|
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L-t~LP~~l~~-----sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL-TNLPENLPA-----ALQIM 393 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC-CCCCHhHHH-----HHHHH
Confidence 678899999998888887663 68899999988654 566655 36889999988654 466765432 78889
Q ss_pred EcCCCCccccchHhh----cCCCCCEEeecCCCCc
Q 046086 738 HLKGNNLERIPESIR----HLSKLKSLDISYCEWL 768 (966)
Q Consensus 738 ~Ls~n~l~~lp~~i~----~l~~L~~L~L~~n~~l 768 (966)
++++|+|+.+|..+. .++++..|+|.+|++.
T Consensus 394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999888876553 3578888999998864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-20 Score=215.37 Aligned_cols=226 Identities=20% Similarity=0.184 Sum_probs=151.9
Q ss_pred chhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc---cccccceEeecCCCCCccccccccccc
Q 046086 492 RSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLV 566 (966)
Q Consensus 492 ~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~ 566 (966)
-+...+.-+|+.|++++| .+..+|..+- ..|+.|+++.|.+.++| ..+.+|++|+|.+|.+..+|.++..++
T Consensus 38 l~~~~~~v~L~~l~lsnn---~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNN---QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred hHHhhheeeeEEeecccc---ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 344444445777888777 3355555444 77777777777777777 667777777887777777777777777
Q ss_pred ccceecccCCCCCCCCCCCCCCcc-------------------CcEEeccCccCCccccccccCCCcccEEeccCCCCC-
Q 046086 567 NIKEIDLHGSKQLSKLPDLSQARN-------------------LERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESL- 626 (966)
Q Consensus 567 ~L~~L~Ls~n~~~~~~p~l~~l~~-------------------L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l- 626 (966)
+|++|++|+|.+....+-+..++. ++.+++..|.+.+.++..+.+++. .|+|++|...
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 888888877765443333333333 455555555555556666666666 5777777644
Q ss_pred ---------cccCC--------ccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEecc
Q 046086 627 ---------RSLPD--------TICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIH 689 (966)
Q Consensus 627 ---------~~lp~--------~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~ 689 (966)
..+-. .+..++|+.|..+.|......+.....+|++++++.|.++.+|.|++.+.+|+.|...
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 11100 0134678888888888876666666669999999999999999999999999999999
Q ss_pred CCCCc----------------------ccccccccCCCCCcEEEccCCCCCccccc
Q 046086 690 NCTRL----------------------EYIKSSIFKLKSLKHIEISSCSNLKRFPE 723 (966)
Q Consensus 690 ~n~~~----------------------~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~ 723 (966)
+|.+. ..+|.....+++|++|+|..|+ +..+|+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~ 327 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPD 327 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccch
Confidence 98752 1334444556667777776633 344444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2.5e-18 Score=205.24 Aligned_cols=227 Identities=20% Similarity=0.303 Sum_probs=183.6
Q ss_pred CceeEEEecCCCCcccc-cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCcc
Q 046086 523 TDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCS 600 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 600 (966)
.+...|+++++.++++| .-+.+|+.|+|++|+++.+|..+. .+|++|++++|++. .+|. + ..+|+.|+|++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCc
Confidence 56678999999999999 567899999999999999998765 59999999999855 5663 3 3589999999987
Q ss_pred CCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCC
Q 046086 601 SLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECL 680 (966)
Q Consensus 601 ~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l 680 (966)
+. .+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++|.. ..+|.....+|+.|++++|.++.+|..+ .
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~-~sL~~L~Ls~N~L-t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~ 324 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNK-ISCLPENLP-EELRYLSVYDNSI-RTLPAHLPSGITHLNVQSNSLTALPETL--P 324 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCc-cCccccccC-CCCcEEECCCCcc-ccCcccchhhHHHHHhcCCccccCCccc--c
Confidence 55 6777664 589999999775 457887653 5899999999964 4577665568999999999999998765 3
Q ss_pred CCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEE
Q 046086 681 SKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSL 760 (966)
Q Consensus 681 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L 760 (966)
++|+.|++++|.+.+ +|..+. ++|+.|++++|+. ..+|..+. ++|+.|+|++|+|+.+|..+. ..|+.|
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp-----~~L~~LdLs~N~Lt~LP~~l~--~sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQI-TVLPETLP-----PTITTLDVSRNALTNLPENLP--AALQIM 393 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCC-CcCChhhc-----CCcCEEECCCCcCCCCCHhHH--HHHHHH
Confidence 789999999997654 776653 7999999999764 56776442 389999999999999998775 369999
Q ss_pred eecCCCCccccCCC
Q 046086 761 DISYCEWLHTLPEL 774 (966)
Q Consensus 761 ~L~~n~~l~~lp~~ 774 (966)
++++|++. .+|..
T Consensus 394 dLs~N~L~-~LP~s 406 (754)
T PRK15370 394 QASRNNLV-RLPES 406 (754)
T ss_pred hhccCCcc-cCchh
Confidence 99999865 66653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=6.8e-20 Score=209.21 Aligned_cols=294 Identities=23% Similarity=0.277 Sum_probs=228.3
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc--cccccceEeecCCCCC
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNV 555 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i 555 (966)
.+|++.+. . .......+.+|+.|....|.... +. ....+|+.|+.+.|++..+- +.+.+|+++++++|++
T Consensus 182 ~ldLr~N~-~---~~~dls~~~~l~~l~c~rn~ls~---l~-~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 182 QLDLRYNE-M---EVLDLSNLANLEVLHCERNQLSE---LE-ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL 253 (1081)
T ss_pred eeecccch-h---hhhhhhhccchhhhhhhhcccce---EE-ecCcchheeeeccCcceeeccccccccceeeecchhhh
Confidence 56777664 1 14456777888888877763222 11 11278999999999988665 8889999999999999
Q ss_pred cccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-
Q 046086 556 EQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI- 633 (966)
Q Consensus 556 ~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~- 633 (966)
+.+|+.+..+.+|+.|++.+|++ ..+| .+...++|+.|.+..|. +..+|+..+.++.|++|+|..|+ ++++|+.+
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l 330 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFL 330 (1081)
T ss_pred hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccchHHH
Confidence 99999999999999999999987 5555 58889999999999875 66788888999999999999875 67888755
Q ss_pred --CCCcccEEEecCCCCCCCCcccccC---cccEEeecccccc-cccccccCCCCCCEEeccCCCCcccccccccCCCCC
Q 046086 634 --CSESLFELRLWGCLNLKNFPEISSS---HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSL 707 (966)
Q Consensus 634 --~l~~L~~L~L~~~~~l~~~p~~~~~---~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 707 (966)
-..+|..|+.+.|. +...|..... .|+.|++.+|.++ ..-+.+.+..+|+.|+|++|++.......+.++..|
T Consensus 331 ~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred hhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence 22336666666554 3334432222 7999999999998 333348889999999999996544444557899999
Q ss_pred cEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCcc-ccCC-CC-CCcceeecc
Q 046086 708 KHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLH-TLPE-LP-RNLYHLEAH 784 (966)
Q Consensus 708 ~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~-~lp~-~~-~~L~~L~~~ 784 (966)
++|+||| +.++.+|+.+..|. .|++|...+|.+..+| .+.+++.|+.+|++.|.+.. .+|. .| ++|++|+++
T Consensus 410 eeL~LSG-NkL~~Lp~tva~~~---~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 410 EELNLSG-NKLTTLPDTVANLG---RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HHHhccc-chhhhhhHHHHhhh---hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 9999999 56788998888777 8999999999999999 88999999999999998753 3443 45 788888888
Q ss_pred cCcc
Q 046086 785 HCTL 788 (966)
Q Consensus 785 ~c~~ 788 (966)
+.+.
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 7763
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=6.8e-17 Score=168.46 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=145.7
Q ss_pred eeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---Cce-eEEEecCCCCcccc----cccccce
Q 046086 475 QAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDV-RYFEWHEFPLKTLN----IRAENLV 546 (966)
Q Consensus 475 ~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L-~~L~l~~~~l~~lp----~~l~~L~ 546 (966)
-.|.||.+.+ ..+++.+|+.+++||.|+|++| .|..+....| .+| +.+.+++|.++.+| ..+..|+
T Consensus 70 veirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 70 VEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred eEEEeccCCc---ccCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4466666654 4899999999999999999999 5566666666 333 33455568899999 5677788
Q ss_pred EeecCCCCCcccccc-cccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCC------------ccccccccCC
Q 046086 547 SLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSL------------METHSSIQYL 612 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~------------~~~~~~l~~l 612 (966)
.|.+.-|++.-++.. +..|++|..|.+..|.+...-. .|..+.+++.+.+..|... ...|..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 888888888866544 7788888888888886443333 3777777777777665411 1111111111
Q ss_pred CcccEE-------------------------eccCCCCCcccCCcc--CCCcccEEEecCCCCCCCCcccccC--cccEE
Q 046086 613 NKLEVL-------------------------DLRLCESLRSLPDTI--CSESLFELRLWGCLNLKNFPEISSS--HIHFL 663 (966)
Q Consensus 613 ~~L~~L-------------------------~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L 663 (966)
.-..-. -.+.|......|..- .+++|++|+|++|.....-+..+.. .+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111000 011111122222211 5566777777776655554444443 66677
Q ss_pred eecccccccccc-cccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCC
Q 046086 664 DLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 664 ~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
.|..|++..+.. .|.++.+|+.|+|.+|++....|..|..+.+|.+|+|-.|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 777776665543 35666677777777776666666666666666666665544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=6.6e-16 Score=161.16 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=178.2
Q ss_pred cccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCccc-ccccccccccceecccCCCCCCCCCC--C
Q 046086 513 MLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLPD--L 585 (966)
Q Consensus 513 ~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p~--l 585 (966)
.+..+|..+..+-..+++..|.++++| ..+++|+.|||++|+|+.| |..|+.|.+|..|-+-+|+.++.+|. |
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 446677777777888899999999999 6788999999999999987 56699999998888777555777773 9
Q ss_pred CCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCC------------C
Q 046086 586 SQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLK------------N 651 (966)
Q Consensus 586 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~------------~ 651 (966)
.++..|+.|.+.-|+..-.....+..|++|..|.+.+|. ...++... .+.+++++.+..|...- .
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 999999999999988777777889999999999999885 55666633 77888888887765211 0
Q ss_pred CcccccC--cccEEeeccccccccccc-c-cCCCCCCEEeccCCCCccccc-ccccCCCCCcEEEccCCCCCcccccccc
Q 046086 652 FPEISSS--HIHFLDLYECGIEDMPLS-I-ECLSKLNSLDIHNCTRLEYIK-SSIFKLKSLKHIEISSCSNLKRFPEISS 726 (966)
Q Consensus 652 ~p~~~~~--~L~~L~L~~n~i~~lp~~-~-~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~ 726 (966)
.|-.... ......+.+.++..++.. + ..+..+..=-.+.|......| ..|..|++|+.|+|++|.....-+.++.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1110000 122223333333333221 1 111122211223333333333 3477888888888888766655555565
Q ss_pred CCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccccCCCCC
Q 046086 727 SCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTLPELPR 776 (966)
Q Consensus 727 ~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~~~~ 776 (966)
... .|+.|.|..|++..+.. .+.+++.|+.|+|.+|+++..-|..+.
T Consensus 296 ~~a---~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 296 GAA---ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred chh---hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 544 78888888888887765 457788888888888887666665443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=1.7e-12 Score=165.22 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=185.3
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
+|.....+|-|+.-++.+.+. ...+++.|.|++|.||||++..+.++. ..+.|+.... ...+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~---~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDE---SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCc---ccCCHHHHHH
Confidence 566677888888766666432 467899999999999999999988643 3688986321 2233344445
Q ss_pred HHHHHHhCCCCC-------------CCChhhhHHHHHHHhc--CCcEEEEEecCCChH------HHHHHhcccCCCCCCc
Q 046086 207 QLLSTLLNDRNV-------------KNSPNIVLNFQSKRFT--RKKVLIVFDDVTHLK------QIEFLIGRIDWLASGS 265 (966)
Q Consensus 207 ~ll~~l~~~~~~-------------~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~~~~~~~gs 265 (966)
.++..+...... ..........+...+. +.+++|||||+...+ .+..+... ..++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 555554311100 0111222222333332 689999999995532 23344433 34678
Q ss_pred EEEEEeCchhhhhc--C-CcceeEeec----cCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhh
Q 046086 266 RIIITTRDKHVLSN--C-LVDQIYEVK----ELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSF 338 (966)
Q Consensus 266 ~IIiTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~ 338 (966)
++|||||...-... . ......++. +|+.+|+.++|....... .+ .+.+.++.+.++|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~---~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IE---AAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--CC---HHHHHHHHHHhCChHHHHHHHHHH
Confidence 89999998522211 0 112244555 899999999998765321 11 244788999999999999999877
Q ss_pred hcCCCHHHHHHHHHHHhcCCCchHHHHHHH-hhcCCChhhHhHhhhcccccCCCCHHHHHHHHhHcCCChhcchhhhhcC
Q 046086 339 LFGRRKEEWKSAMKKMEIVPHMEIQEVLKI-SYDGLDDHEQGIFLDISCFLVGEDRDQVMRFLNSCGFFAEVGLSVRVDK 417 (966)
Q Consensus 339 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~ 417 (966)
+...... .......+...+...+.+.+.- .++.||++.++.++.+|+++ .++.+.+..+... -.....++.|.+.
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQ 304 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHC
Confidence 7543210 0111222222233456665443 48999999999999999986 5565555554431 1235668899999
Q ss_pred cceeEe----cCEEEecHHHHHHHHHHhhc
Q 046086 418 SLITID----YNTIRMHDFLRDMGREIVQK 443 (966)
Q Consensus 418 sLi~~~----~~~~~mHdll~~~~~~i~~~ 443 (966)
+++... ..+|++|++++++.+.....
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 986532 23799999999999887644
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.3e-16 Score=144.23 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=92.1
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
+.+.+.+.|.|++|+++.+|..+..|.+|+.|++++|++....+.++.++.|+.|++.-|. +..+|..|+.++-|+.||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 4566666777777777777777777777777777777644333356666666666666543 445566666666666666
Q ss_pred ccCCCCCc-ccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccc
Q 046086 620 LRLCESLR-SLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYI 697 (966)
Q Consensus 620 L~~n~~l~-~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~ 697 (966)
|.+|+... .+|..+ .++ .|+.|+|+.|.+.-+|..++++++|+.|.+.+|.++ ++
T Consensus 109 ltynnl~e~~lpgnff~m~----------------------tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~l 165 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMT----------------------TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SL 165 (264)
T ss_pred ccccccccccCCcchhHHH----------------------HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hC
Confidence 66655332 233322 111 355666666667777777777777777777776433 45
Q ss_pred cccccCCCCCcEEEccC
Q 046086 698 KSSIFKLKSLKHIEISS 714 (966)
Q Consensus 698 p~~l~~l~~L~~L~Ls~ 714 (966)
|..++.++.|++|.+.+
T Consensus 166 pkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQG 182 (264)
T ss_pred cHHHHHHHHHHHHhccc
Confidence 55555555555555555
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=1.6e-14 Score=160.37 Aligned_cols=227 Identities=19% Similarity=0.144 Sum_probs=127.0
Q ss_pred cccceEeecCCCCCc-----ccccccccccccceecccCCCCCCC------CC-CCCCCccCcEEeccCccCCccccccc
Q 046086 542 AENLVSLKLPGSNVE-----QLWDDVQNLVNIKEIDLHGSKQLSK------LP-DLSQARNLERLKLDGCSSLMETHSSI 609 (966)
Q Consensus 542 l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~Ls~n~~~~~------~p-~l~~l~~L~~L~L~~~~~~~~~~~~l 609 (966)
+.+|++|+++++.++ .++..+...++|++|+++++..... ++ .+..+++|+.|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666666653 3444455566666666666654310 11 14445666666666666554444444
Q ss_pred cCCCc---ccEEeccCCCCCc----ccCCcc-CC-CcccEEEecCCCCCCC----Cccccc--CcccEEeecccccc---
Q 046086 610 QYLNK---LEVLDLRLCESLR----SLPDTI-CS-ESLFELRLWGCLNLKN----FPEISS--SHIHFLDLYECGIE--- 671 (966)
Q Consensus 610 ~~l~~---L~~L~L~~n~~l~----~lp~~~-~l-~~L~~L~L~~~~~l~~----~p~~~~--~~L~~L~L~~n~i~--- 671 (966)
..+.+ |++|++++|.... .+...+ .+ ++|+.|++++|..... ++..+. .+|++|++++|.++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44433 6666666665432 111111 33 5666667666654421 111111 15777777777766
Q ss_pred --cccccccCCCCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCCCCccccccc-cCCC-CCCCccEEEcCCCC
Q 046086 672 --DMPLSIECLSKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCSNLKRFPEIS-SSCN-REGSTEVLHLKGNN 743 (966)
Q Consensus 672 --~lp~~~~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~-~~~~L~~L~Ls~n~ 743 (966)
.++..+..+++|+.|++++|.+.+ .++..+..+++|++|++++|+....-...+ ..+. ....|+.|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 234445566788888888876543 234455667788888888876443111111 1110 12378888888887
Q ss_pred cc-----ccchHhhcCCCCCEEeecCCCCc
Q 046086 744 LE-----RIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 744 l~-----~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
++ .++..+..+++|++|++++|.+.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 75 34455666778888888888765
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.5e-15 Score=139.26 Aligned_cols=157 Identities=24% Similarity=0.394 Sum_probs=94.6
Q ss_pred ccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccE
Q 046086 561 DVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFE 640 (966)
Q Consensus 561 ~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~ 640 (966)
++.++.+++.|.||+|++....|.+..+.+|+.|++.+|+ +.++|.+++.+++|+.|++.-|. +..+|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lpr--------- 96 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPR--------- 96 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCcc---------
Confidence 4556777888888888877777788888888888888765 56677788888888888777553 334444
Q ss_pred EEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCc-ccccccccCCCCCcEEEccCCCCCc
Q 046086 641 LRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRL-EYIKSSIFKLKSLKHIEISSCSNLK 719 (966)
Q Consensus 641 L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~~~~l~ 719 (966)
.|+.++.|+.|||.+|.+. ..+|..|..++.|+.|+|++| ..+
T Consensus 97 -----------------------------------gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe 140 (264)
T KOG0617|consen 97 -----------------------------------GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFE 140 (264)
T ss_pred -----------------------------------ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-Ccc
Confidence 3444444444444444332 234444444444444444442 223
Q ss_pred cccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCC
Q 046086 720 RFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 720 ~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~ 767 (966)
.+|..++.+. +|+.|.+..|.+-++|..++.++.|++|.+.+|++
T Consensus 141 ~lp~dvg~lt---~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 141 ILPPDVGKLT---NLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cCChhhhhhc---ceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 4444444333 55555555566666666666666666666666653
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=2.6e-14 Score=158.74 Aligned_cols=205 Identities=20% Similarity=0.171 Sum_probs=125.3
Q ss_pred cccccccccceecccCCCCCCCCC-CCCCC---ccCcEEeccCccCCc----cccccccCC-CcccEEeccCCCCCcc--
Q 046086 560 DDVQNLVNIKEIDLHGSKQLSKLP-DLSQA---RNLERLKLDGCSSLM----ETHSSIQYL-NKLEVLDLRLCESLRS-- 628 (966)
Q Consensus 560 ~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l---~~L~~L~L~~~~~~~----~~~~~l~~l-~~L~~L~L~~n~~l~~-- 628 (966)
..+..+++|+.|++++|.+....+ .+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.+.+.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 345556677777777666543333 12222 337777777665442 222344555 6777777777765422
Q ss_pred --cCCcc-CCCcccEEEecCCCCCCC----Cccccc--CcccEEeecccccc-----cccccccCCCCCCEEeccCCCCc
Q 046086 629 --LPDTI-CSESLFELRLWGCLNLKN----FPEISS--SHIHFLDLYECGIE-----DMPLSIECLSKLNSLDIHNCTRL 694 (966)
Q Consensus 629 --lp~~~-~l~~L~~L~L~~~~~l~~----~p~~~~--~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~L~~n~~~ 694 (966)
++..+ .+++|++|++++|..... ++.... .+|+.|++++|.++ .++..+..+++|+.|++++|.+.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 12222 445677777777664421 111111 25888888888775 34556778899999999999876
Q ss_pred cccccccc-----CCCCCcEEEccCCCCC----ccccccccCCCCCCCccEEEcCCCCcccc-----chHhhcC-CCCCE
Q 046086 695 EYIKSSIF-----KLKSLKHIEISSCSNL----KRFPEISSSCNREGSTEVLHLKGNNLERI-----PESIRHL-SKLKS 759 (966)
Q Consensus 695 ~~~p~~l~-----~l~~L~~L~Ls~~~~l----~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-----p~~i~~l-~~L~~ 759 (966)
......+. ..+.|++|++++|... ..+...+..+ ++|+.+++++|.++.- ...+... +.|+.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~---~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK---ESLLELDLRGNKFGEEGAQLLAESLLEPGNELES 311 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC---CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhh
Confidence 52222221 2489999999998754 1222333332 4899999999999833 3344555 78999
Q ss_pred EeecCCCC
Q 046086 760 LDISYCEW 767 (966)
Q Consensus 760 L~L~~n~~ 767 (966)
|++.+|++
T Consensus 312 ~~~~~~~~ 319 (319)
T cd00116 312 LWVKDDSF 319 (319)
T ss_pred cccCCCCC
Confidence 99998863
No 27
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.42 E-value=5.5e-14 Score=135.16 Aligned_cols=92 Identities=35% Similarity=0.531 Sum_probs=81.3
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCC--CEEEeEeeecccCccc-cccccchhhHHHHH
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYG--QIVIPVFYGVDPSHVR-WQTGIFGNLFSKLE 77 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~--~~v~pify~vdps~vr-~~~g~~~~~~~~~~ 77 (966)
|..+.+++.+||++||++|+|||++|++|.||+.||..++++....+ ++|+|+||+|.+++++ .+.+.|+..|..+.
T Consensus 41 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~ 120 (141)
T PF01582_consen 41 GESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYL 120 (141)
T ss_dssp SSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCE
T ss_pred cccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhhe
Confidence 77888999999999999999999999999999999999999986654 8999999999999999 79999999998877
Q ss_pred hhCh-----hhHHHHHHHHH
Q 046086 78 ERFP-----EMRKRWRNALT 92 (966)
Q Consensus 78 ~~~~-----~~~~~w~~al~ 92 (966)
...+ .....|++++.
T Consensus 121 ~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 121 RWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp ETSSSGGGGGHHHHHHHHHH
T ss_pred eCCCCCCccHHHHHHHHHhc
Confidence 6532 36789998865
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.20 E-value=6.7e-10 Score=128.30 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=187.1
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
+|....+.|-|..-++.+... .+.|.+.|..++|.|||||+.+++. ....-..+.|+... ....+......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHH
Confidence 455567788887666655433 4689999999999999999999988 44455678898743 23445566666
Q ss_pred HHHHHHhCCCC-------------CCCChhhhHHHHHHHhc--CCcEEEEEecC---CChH---HHHHHhcccCCCCCCc
Q 046086 207 QLLSTLLNDRN-------------VKNSPNIVLNFQSKRFT--RKKVLIVFDDV---THLK---QIEFLIGRIDWLASGS 265 (966)
Q Consensus 207 ~ll~~l~~~~~-------------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv---~~~~---~~~~l~~~~~~~~~gs 265 (966)
.++..+....+ ...+.......+...+. .++..+||||- .++. .++.+.... .++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCe
Confidence 66666653322 12233334444444343 47899999996 3332 355555543 4888
Q ss_pred EEEEEeCchhhhhc---CCcceeEeec----cCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhh
Q 046086 266 RIIITTRDKHVLSN---CLVDQIYEVK----ELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSF 338 (966)
Q Consensus 266 ~IIiTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~ 338 (966)
.+|+|||...-+.. .-.+...++. .++.+|+.++|.......-+ ..-++.+.++..|.+-|+..++-.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHH
Confidence 99999999843321 1112334443 58999999999887521111 123789999999999999999988
Q ss_pred hcC-CCHHHHHHHHHHHhcCCCchHHH-HHHHhhcCCChhhHhHhhhcccccCCCCHHHHHHHHhHcCCChhcchhhhhc
Q 046086 339 LFG-RRKEEWKSAMKKMEIVPHMEIQE-VLKISYDGLDDHEQGIFLDISCFLVGEDRDQVMRFLNSCGFFAEVGLSVRVD 416 (966)
Q Consensus 339 L~~-~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~ 416 (966)
+++ .+.+.-...+. .. ...|.+ ...--++.||++.|..++-+|++.. +.-+-...+.... ....-+++|..
T Consensus 237 ~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHh
Confidence 873 33222211111 11 112222 2334468999999999999998843 2222222222111 11233788889
Q ss_pred CcceeEe----cCEEEecHHHHHHHHHHhhcc
Q 046086 417 KSLITID----YNTIRMHDFLRDMGREIVQKE 444 (966)
Q Consensus 417 ~sLi~~~----~~~~~mHdll~~~~~~i~~~e 444 (966)
++|+-+. .+.|+.|.++.++-+...+.+
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9887754 789999999999998877664
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=2e-09 Score=123.15 Aligned_cols=282 Identities=15% Similarity=0.104 Sum_probs=164.5
Q ss_pred CCCccccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhhccCC--ceEEEEeehhhhccCCHHHHH
Q 046086 130 DNKELVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE--GSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~ 205 (966)
.++.++||+.++++|...+... ....+.+.|+|++|+|||++++.+++++..... ..+++.+. .......+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~----~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ----IDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC----cCCCHHHHH
Confidence 5578999999999999998532 233456889999999999999999998766542 23344321 223455667
Q ss_pred HHHHHHHhCCCC--CCCChhhhHHHHHHHhc--CCcEEEEEecCCChH------HHHHHhcccCCCCCCcE--EEEEeCc
Q 046086 206 QQLLSTLLNDRN--VKNSPNIVLNFQSKRFT--RKKVLIVFDDVTHLK------QIEFLIGRIDWLASGSR--IIITTRD 273 (966)
Q Consensus 206 ~~ll~~l~~~~~--~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~--IIiTTR~ 273 (966)
.+++.++..... ...+..+....+.+.+. +++.+||||+++... .+..+...... .++++ +|.++.+
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 777777765221 12234455666666664 456899999997743 34454433221 13333 6667666
Q ss_pred hhhhhcCC-------cceeEeeccCChhhHHHHHhhhhcC---CCCCCcc-HHHHHHHHHHHcCCCchhHHhHhhhh---
Q 046086 274 KHVLSNCL-------VDQIYEVKELLDVDALKLFSRRAFG---EDDPNAS-YKELTQEAVKYAKGVPLALKVLGSFL--- 339 (966)
Q Consensus 274 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~-~~~~~~~iv~~~~G~PLal~~~g~~L--- 339 (966)
..+..... ....+.+++++.++..+++..++-. .....++ ...+++......|..+.|+.++-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 54332211 1246789999999999999887632 2122222 22222222222455667776654322
Q ss_pred --cC---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccC----CCCHHHHH----HHHhHcCCC
Q 046086 340 --FG---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLV----GEDRDQVM----RFLNSCGFF 406 (966)
Q Consensus 340 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~l~----~~~~~~g~~ 406 (966)
++ -+.+.+..+.+... .....-.+..||.++|.++..++.... ......+. .+....|..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 24556666665541 223455678999999988877664432 12222222 222223332
Q ss_pred h------hcchhhhhcCcceeEe
Q 046086 407 A------EVGLSVRVDKSLITID 423 (966)
Q Consensus 407 ~------~~~l~~L~~~sLi~~~ 423 (966)
+ ...+..|.+.++|...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 2346777777877653
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=1.4e-09 Score=119.80 Aligned_cols=269 Identities=16% Similarity=0.125 Sum_probs=150.6
Q ss_pred CccccccchHHHHHHhhhcC---CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH
Q 046086 132 KELVGVECPINEIESLLRTG---SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL 208 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 208 (966)
.+|||++..+++|..++... ....+.+.++|++|+|||+||+.+++++...+. +.. ... ......+.. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~---~~~~~~l~~-~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPA---LEKPGDLAA-I 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cch---hcCchhHHH-H
Confidence 57999999999999888631 233556889999999999999999998764331 111 100 011111111 1
Q ss_pred HHHHhCCCC-CCCC----hhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcC--C
Q 046086 209 LSTLLNDRN-VKNS----PNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNC--L 281 (966)
Q Consensus 209 l~~l~~~~~-~~~~----~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--~ 281 (966)
+..+..... -.++ .....+.+...+.+.+..+|+|+..+..++.... .+..-|..|||...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHhh
Confidence 111111100 0000 0111222333334444445555444333332111 2345556677765433321 1
Q ss_pred cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHH-HHhcCCCc
Q 046086 282 VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMK-KMEIVPHM 360 (966)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~-~l~~~~~~ 360 (966)
....+++++++.+|..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |..+.. .-.....+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 2356899999999999999988753222 1123567889999999997655554432 111100 00001111
Q ss_pred ---hHHHHHHHhhcCCChhhHhHhh-hcccccCC-CCHHHHHHHHhHcCCChhcchh-hhhcCcceeEe
Q 046086 361 ---EIQEVLKISYDGLDDHEQGIFL-DISCFLVG-EDRDQVMRFLNSCGFFAEVGLS-VRVDKSLITID 423 (966)
Q Consensus 361 ---~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~ 423 (966)
.....+...|.+++..++..+. .++.+..+ ...+.+...+.......+..++ .|++++||...
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 1222356678899998888776 44555433 4677788777766666666677 69999999643
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=4.5e-12 Score=138.60 Aligned_cols=172 Identities=22% Similarity=0.315 Sum_probs=100.2
Q ss_pred ccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccC
Q 046086 543 ENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRL 622 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 622 (966)
..-+..||+.|++..+|..+..+..|+.+.|.+|.+ ..+|..+.++..|.+|+|+.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~------------------------r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI------------------------RTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccc------------------------eecchhhhhhhHHHHhhhcc
Confidence 334555666666666666666666666666655542 33455556666666666665
Q ss_pred CCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCccccccccc
Q 046086 623 CESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIF 702 (966)
Q Consensus 623 n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~ 702 (966)
|+ +..+|..++.-- |+.|-+++|.++.+|..++.+..|..|+.+.|. ...+|..++
T Consensus 131 Nq-lS~lp~~lC~lp----------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~ 186 (722)
T KOG0532|consen 131 NQ-LSHLPDGLCDLP----------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLG 186 (722)
T ss_pred ch-hhcCChhhhcCc----------------------ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhh
Confidence 54 344555442222 455555555556666666666666666666663 345555666
Q ss_pred CCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCC
Q 046086 703 KLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~ 767 (966)
.+.+|+.|+++.|+ +..+|+.+..+ .|..||+|.|++..||-.|.+++.|++|.|.+|++
T Consensus 187 ~l~slr~l~vrRn~-l~~lp~El~~L----pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNH-LEDLPEELCSL----PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hHHHHHHHHHhhhh-hhhCCHHHhCC----ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 66666666666643 33444444432 46667777777777777777777777777777763
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=1.6e-10 Score=121.98 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=100.2
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH------HHH
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL------RQQ 207 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l------~~~ 207 (966)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-..++|+........ ...... .+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999753 35689999999999999999999987543334444432211110 011111 111
Q ss_pred HHHHHh----CCCC------CCCChhhhHHHHHHHhc--CCcEEEEEecCCChH-------H----HHHHhcccCCCCCC
Q 046086 208 LLSTLL----NDRN------VKNSPNIVLNFQSKRFT--RKKVLIVFDDVTHLK-------Q----IEFLIGRIDWLASG 264 (966)
Q Consensus 208 ll~~l~----~~~~------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-------~----~~~l~~~~~~~~~g 264 (966)
+...+. .... ...........+.+.+. +++++||+||++... . +..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 111111 1100 01111222333333332 345999999986554 1 2223322111 233
Q ss_pred cEEEEEeCchhhhhc--------CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 265 SRIIITTRDKHVLSN--------CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 265 s~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
..+|++.....+... .+....+.+++|+.+++.+++...+-....- +.-.+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555544433322 1223459999999999999998865332111 11235579999999999988764
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=7.9e-09 Score=116.97 Aligned_cols=246 Identities=18% Similarity=0.150 Sum_probs=143.7
Q ss_pred CCCccccccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhccCC------ceEEEEeehhhhccCCH
Q 046086 130 DNKELVGVECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE------GSYFAHNVQEAQENGGL 201 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~~~ 201 (966)
.++.++||++++++|...+.. .....+.+.|+|++|+|||++++.+++++..... ..+|+.+. .....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCCH
Confidence 346899999999999999863 1233457899999999999999999997654322 23444422 22344
Q ss_pred HHHHHHHHHHHhC--CCC--CCCChhhhHHHHHHHh--cCCcEEEEEecCCChH-----HHHHHhccc--CC-CCCCcEE
Q 046086 202 AHLRQQLLSTLLN--DRN--VKNSPNIVLNFQSKRF--TRKKVLIVFDDVTHLK-----QIEFLIGRI--DW-LASGSRI 267 (966)
Q Consensus 202 ~~l~~~ll~~l~~--~~~--~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~-----~~~~l~~~~--~~-~~~gs~I 267 (966)
..+...++.++.. ... ...+..+....+.+.+ .+++++||||+++... .+..+.... .. .+....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 5666777777642 111 1112333444555555 3567899999998762 133333221 11 1133355
Q ss_pred EEEeCchhhhhcC-------CcceeEeeccCChhhHHHHHhhhhc---CCCCCCccHHHHHHHHHHHcCCCch-hHHhHh
Q 046086 268 IITTRDKHVLSNC-------LVDQIYEVKELLDVDALKLFSRRAF---GEDDPNASYKELTQEAVKYAKGVPL-ALKVLG 336 (966)
Q Consensus 268 IiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~g 336 (966)
|.+|.+....... .....+.+++++.+|..+++..++- ....-.++..+.+.+++....|.|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666554332111 1124678999999999999998863 2222233333455667777788884 333322
Q ss_pred hhh-----cC---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhccc
Q 046086 337 SFL-----FG---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISC 386 (966)
Q Consensus 337 ~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~ 386 (966)
... .+ -+.+..+.+.+.+. .....-+..+||.++|.++..++.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 11 23445555554442 233445667899988877766553
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=1.1e-09 Score=121.37 Aligned_cols=274 Identities=15% Similarity=0.125 Sum_probs=150.0
Q ss_pred cCCCCccccccchHHHHHHhhhc---CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRT---GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|....+|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. ...... ...+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~---~~~l 93 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEK---PGDL 93 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccC---hHHH
Confidence 44567899999999999888763 2234567889999999999999999998764321 111 100000 0111
Q ss_pred HHHHHHHHhCCCC-CCCCh----hhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhc
Q 046086 205 RQQLLSTLLNDRN-VKNSP----NIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSN 279 (966)
Q Consensus 205 ~~~ll~~l~~~~~-~~~~~----~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 279 (966)
..++..+..... -.++. ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|+|...+...
T Consensus 94 -~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 94 -AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred -HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHH
Confidence 111111110000 00000 00111122222222333333332222211110 0123445566665433322
Q ss_pred C--CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHHHHhcC
Q 046086 280 C--LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMKKMEIV 357 (966)
Q Consensus 280 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l~~~ 357 (966)
. .....+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+ ..|.... .-...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCCC
Confidence 1 123468999999999999999887543222 223568899999999996554444332 1111110 00011
Q ss_pred CC---chHHHHHHHhhcCCChhhHhHhh-hcccccCC-CCHHHHHHHHhHcCCChhcchh-hhhcCcceeEe
Q 046086 358 PH---MEIQEVLKISYDGLDDHEQGIFL-DISCFLVG-EDRDQVMRFLNSCGFFAEVGLS-VRVDKSLITID 423 (966)
Q Consensus 358 ~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~ 423 (966)
.. ....+.+...+.+|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||...
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 11 12234456678889998888886 55566544 4678888877665555565666 89999998643
No 35
>PF05729 NACHT: NACHT domain
Probab=99.07 E-value=1e-09 Score=108.99 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=87.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQ 229 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l 229 (966)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..........+...+......... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~--~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQLPESIA---PIEELL--Q 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHhhccchh---hhHHHH--H
Confidence 6899999999999999999999876543 233333 344433333223444444433322211 111111 1
Q ss_pred HHHhcCCcEEEEEecCCChHH---------HHHHhcc-cC-CCCCCcEEEEEeCchhh---hhcCCcceeEeeccCChhh
Q 046086 230 SKRFTRKKVLIVFDDVTHLKQ---------IEFLIGR-ID-WLASGSRIIITTRDKHV---LSNCLVDQIYEVKELLDVD 295 (966)
Q Consensus 230 ~~~L~~k~~LlVLDdv~~~~~---------~~~l~~~-~~-~~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~~e 295 (966)
.-....+++++|+|++|+... +..++.. +. ...++.++|||+|.... .........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 112257899999999966432 1122211 11 12578999999998865 2223344689999999999
Q ss_pred HHHHHhhhh
Q 046086 296 ALKLFSRRA 304 (966)
Q Consensus 296 a~~Lf~~~a 304 (966)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987653
No 36
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.07 E-value=4.3e-10 Score=108.32 Aligned_cols=90 Identities=43% Similarity=0.714 Sum_probs=78.6
Q ss_pred HHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhc-CCCEEEeEeeecccCccccccccchhhHHHHHhhChhhH
Q 046086 6 ESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHD-YGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEERFPEMR 84 (966)
Q Consensus 6 ~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~-~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~~~~~~ 84 (966)
.+|.+||++|++.|+|+|++|..|.||..|+..++++... ....||||+|+..|+++..+.+.+..++.....++.+..
T Consensus 46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~ 125 (140)
T smart00255 46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDE 125 (140)
T ss_pred HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCch
Confidence 3899999999999999999999999999999999998754 677899999999999999999999999988754554433
Q ss_pred --HHHHHHHHHHh
Q 046086 85 --KRWRNALTEAA 95 (966)
Q Consensus 85 --~~w~~al~~~~ 95 (966)
+.|+.++...+
T Consensus 126 ~~~fW~~~~~~l~ 138 (140)
T smart00255 126 KERFWKKALYAVP 138 (140)
T ss_pred hHHHHHHHHHHhc
Confidence 58999887664
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=2.7e-09 Score=130.78 Aligned_cols=304 Identities=16% Similarity=0.208 Sum_probs=179.8
Q ss_pred cccccchHHHHHHhhhcC-CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe-ehhhhccCCH-------HH-
Q 046086 134 LVGVECPINEIESLLRTG-SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN-VQEAQENGGL-------AH- 203 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~~~~~~~~-------~~- 203 (966)
++||+.+++.|...+... .....++.|.|..|||||+|+++|...+.+++. .|+.. .........+ ++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHHH
Confidence 789999999999988743 234579999999999999999999997765521 11110 0000111111 11
Q ss_pred --------------HHHHHHHHHhCCCCC----------------------CCChhhh-----HHHHHHHh-cCCcEEEE
Q 046086 204 --------------LRQQLLSTLLNDRNV----------------------KNSPNIV-----LNFQSKRF-TRKKVLIV 241 (966)
Q Consensus 204 --------------l~~~ll~~l~~~~~~----------------------~~~~~~~-----~~~l~~~L-~~k~~LlV 241 (966)
...+++..++..... ....... ...+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 112222222111100 0000011 11122222 45699999
Q ss_pred EecC-CChHH----HHHHhcccC--CC-CCCcEEEEEeCch--hhhhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCC
Q 046086 242 FDDV-THLKQ----IEFLIGRID--WL-ASGSRIIITTRDK--HVLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPN 311 (966)
Q Consensus 242 LDdv-~~~~~----~~~l~~~~~--~~-~~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 311 (966)
+||+ |-+.. ++.++.... .+ ....-.+.|.+.. .+.........+.+.||+..+..++............
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 9999 43332 333433321 00 0111223333333 1122223346899999999999999987764323322
Q ss_pred ccHHHHHHHHHHHcCCCchhHHhHhhhhcCC-------CHHHHHHHHHHHhcCC-CchHHHHHHHhhcCCChhhHhHhhh
Q 046086 312 ASYKELTQEAVKYAKGVPLALKVLGSFLFGR-------RKEEWKSAMKKMEIVP-HMEIQEVLKISYDGLDDHEQGIFLD 383 (966)
Q Consensus 312 ~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~ 383 (966)
.+.+..|+++.+|+|+.+..+-..+... +...|..-...+.... .+.+.+.+....+.||...|+++..
T Consensus 240 ---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred ---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3568899999999999999999888663 3345655544444332 1235557889999999999999999
Q ss_pred cccccCCCCHHHHHHHHhHcCCChhcchhhhhcCcceeEe---------cC---EEEecHHHHHHHHHHhh
Q 046086 384 ISCFLVGEDRDQVMRFLNSCGFFAEVGLSVRVDKSLITID---------YN---TIRMHDFLRDMGREIVQ 442 (966)
Q Consensus 384 ~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~---------~~---~~~mHdll~~~~~~i~~ 442 (966)
.||+.+.++.+.+..++...+......+......++|... .. +-..|+.+|+.+-...-
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 9999999999988888765433333333333334444431 11 22578888888866543
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=2.1e-08 Score=108.28 Aligned_cols=178 Identities=14% Similarity=0.092 Sum_probs=106.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHH---
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSK--- 231 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~--- 231 (966)
.+++.|+|++|+||||+++.+++.+...=-..+++. ........+...+...+..... ..........+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHH
Confidence 457999999999999999999988753211112222 1123445666666666543321 1221222223322
Q ss_pred -H-hcCCcEEEEEecCCChH--HHHHHhccc---CCCCCCcEEEEEeCchhhhhcC----------CcceeEeeccCChh
Q 046086 232 -R-FTRKKVLIVFDDVTHLK--QIEFLIGRI---DWLASGSRIIITTRDKHVLSNC----------LVDQIYEVKELLDV 294 (966)
Q Consensus 232 -~-L~~k~~LlVLDdv~~~~--~~~~l~~~~---~~~~~gs~IIiTTR~~~v~~~~----------~~~~~~~l~~L~~~ 294 (966)
. ..+++.++|+||++... .++.+.... ........|++|.... ..... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2 26788999999998753 344443211 1112233455665433 11110 12346789999999
Q ss_pred hHHHHHhhhhcCCC--CCCccHHHHHHHHHHHcCCCchhHHhHhhhh
Q 046086 295 DALKLFSRRAFGED--DPNASYKELTQEAVKYAKGVPLALKVLGSFL 339 (966)
Q Consensus 295 ea~~Lf~~~a~~~~--~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L 339 (966)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987763221 1111234678999999999999999988776
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=5.9e-10 Score=127.64 Aligned_cols=197 Identities=29% Similarity=0.417 Sum_probs=117.6
Q ss_pred EeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCc-cCcEEeccCccCCccccccccCCCcccEEeccCCCC
Q 046086 547 SLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQAR-NLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCES 625 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 625 (966)
.|++..+.+......+..++.++.|++.+|.+....+....+. +|+.|++++|. ...+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-
Confidence 3555555554333444445556666666555333333333332 55555555543 23333445555555555555443
Q ss_pred CcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCC
Q 046086 626 LRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKL 704 (966)
Q Consensus 626 l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l 704 (966)
+..+|... .. .+|+.|++++|.++.+|..++.+.+|+.|.+++|. ....+..+.++
T Consensus 175 l~~l~~~~~~~----------------------~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~ 231 (394)
T COG4886 175 LSDLPKLLSNL----------------------SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNL 231 (394)
T ss_pred hhhhhhhhhhh----------------------hhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhc
Confidence 23333322 22 24667777777777777766666778888887774 23344556677
Q ss_pred CCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCC
Q 046086 705 KSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPE 773 (966)
Q Consensus 705 ~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~ 773 (966)
+++..|.+.+| ....++..+..+. +|+.|++++|.++.++. +..+.+|+.|++++|.+...+|.
T Consensus 232 ~~l~~l~l~~n-~~~~~~~~~~~l~---~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 232 KNLSGLELSNN-KLEDLPESIGNLS---NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccccCCc-eeeeccchhcccc---ccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 77777776664 3333344444433 78888888888888886 88888899999998887766554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.8e-11 Score=131.56 Aligned_cols=197 Identities=20% Similarity=0.206 Sum_probs=156.2
Q ss_pred cccCCCCC----CceeEEEecCCCCcccc---cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCC
Q 046086 515 SHFKGVPF----TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQ 587 (966)
Q Consensus 515 ~~l~~~~~----~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~ 587 (966)
..||.... ..-...+++.|.+..+| ..+..|..|.|.+|.+..+|..++++..|++|||+.|++....+.++.
T Consensus 63 k~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 63 KEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred hcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 44554443 44456788999999999 667789999999999999999999999999999999986554445776
Q ss_pred CccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeec
Q 046086 588 ARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLY 666 (966)
Q Consensus 588 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~ 666 (966)
++ |+.|.+++| .++.+|..++.+.+|..|+.+.|. +.++|..+ ++.+|+.|++..|......++...-.|..||++
T Consensus 143 lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS 219 (722)
T KOG0532|consen 143 LP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS 219 (722)
T ss_pred Cc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc
Confidence 66 899999986 577889999999999999999876 55677666 899999999999976554444333379999999
Q ss_pred ccccccccccccCCCCCCEEeccCCCCcccccccccC---CCCCcEEEccCC
Q 046086 667 ECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFK---LKSLKHIEISSC 715 (966)
Q Consensus 667 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~---l~~L~~L~Ls~~ 715 (966)
.|.+..+|..|.+|+.|++|-|.+|.+ .+.|..++. ..=.++|+..-|
T Consensus 220 cNkis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 999999999999999999999999964 445554432 223466666665
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=5.6e-10 Score=136.20 Aligned_cols=121 Identities=26% Similarity=0.352 Sum_probs=57.3
Q ss_pred ceeEEEecCCCCcccc--cccccceEeecCCCC--Ccccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEecc
Q 046086 524 DVRYFEWHEFPLKTLN--IRAENLVSLKLPGSN--VEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLD 597 (966)
Q Consensus 524 ~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~--i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 597 (966)
..|...+.+|.+..++ ...++|++|-+..|. +..++.. |..++.|+.|||++|.-.+.+|+ ++++-+|++|+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 3444444444444444 222244455444443 3333332 44455555555555555555553 4555555555555
Q ss_pred CccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecC
Q 046086 598 GCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWG 645 (966)
Q Consensus 598 ~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~ 645 (966)
+.. ...+|..+++|++|.+||+..+..+..+|... .+.+|++|.+..
T Consensus 604 ~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 604 DTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 532 33455555555555555555544444444333 355555555543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.3e-10 Score=115.74 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=97.8
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEE
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLH 738 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~ 738 (966)
.|++|||++|.|+.+..++.-++.++.|++++|.+...- .+..+++|+.||||+|. +..+..+-..++ +.++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLG---NIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLG---NIKTLK 358 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhc---CEeeee
Confidence 589999999999999999999999999999999776542 37788999999999954 444443333333 889999
Q ss_pred cCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceee-cccCcccccccCCCCccCce
Q 046086 739 LKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLE-AHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 739 Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~-~~~c~~L~~L~~l~ls~N~l 802 (966)
|++|.+.++. ++..|-+|..||+++|++ +.|+ +.+..+|+.|+.+.+.+|.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~I-----------e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQI-----------EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccch-----------hhHHHhcccccccHHHHHhhcCCCc
Confidence 9999999886 888999999999999974 3333 33455666667777888877
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-10 Score=124.12 Aligned_cols=208 Identities=21% Similarity=0.171 Sum_probs=103.3
Q ss_pred ccccceEeecCCCCCccccc--ccccccccceecccCCCCCCCCC--C-CCCCccCcEEeccCccCCccccc-cccCCCc
Q 046086 541 RAENLVSLKLPGSNVEQLWD--DVQNLVNIKEIDLHGSKQLSKLP--D-LSQARNLERLKLDGCSSLMETHS-SIQYLNK 614 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~ 614 (966)
.+++|+...|.++.+...+. ..+.|++++.||||+|-+..--| . ...+++|+.|+|+.|.+.--..+ .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555555544442 34555555555555553222111 1 23455555555555443221111 1124555
Q ss_pred ccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCC--CCcccccCcccEEeeccccccccc--ccccCCCCCCEEec
Q 046086 615 LEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLK--NFPEISSSHIHFLDLYECGIEDMP--LSIECLSKLNSLDI 688 (966)
Q Consensus 615 L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~--~~p~~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L 688 (966)
|+.|.|+.|.+...--..+ .+++|+.|.|.+|.... ..+......|++|+|++|.+-..+ .-.+.|+.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666665431100011 45566666666663211 122222225667777777666555 34666777777777
Q ss_pred cCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch--HhhcCCCCCEEeecCCC
Q 046086 689 HNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE--SIRHLSKLKSLDISYCE 766 (966)
Q Consensus 689 ~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~n~ 766 (966)
+.|.+.. +...+... .......++|++|+++.|++...++ .+..+++|+.|.+..|.
T Consensus 279 s~tgi~s-----------i~~~d~~s----------~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 279 SSTGIAS-----------IAEPDVES----------LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCcch-----------hcCCCccc----------hhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 6664321 11111100 0011123378888888888776553 56667778888877777
Q ss_pred Ccc
Q 046086 767 WLH 769 (966)
Q Consensus 767 ~l~ 769 (966)
+..
T Consensus 338 ln~ 340 (505)
T KOG3207|consen 338 LNK 340 (505)
T ss_pred ccc
Confidence 643
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=9.7e-10 Score=125.83 Aligned_cols=175 Identities=27% Similarity=0.325 Sum_probs=86.5
Q ss_pred CceeEEEecCCCCcccc---cccc-cceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccC
Q 046086 523 TDVRYFEWHEFPLKTLN---IRAE-NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDG 598 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp---~~l~-~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 598 (966)
..+..|++.++++..+| ..+. +|+.|++++|++..+|..+..+++|+.|++++|++....+..+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 34555555555555555 2232 5666666666666665555666666666666665332222233555555566555
Q ss_pred ccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccccc
Q 046086 599 CSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIE 678 (966)
Q Consensus 599 ~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~ 678 (966)
|. ...+|..++.+..|++|.+++|.....+.....+.. +..|.+.+|.+..++..++
T Consensus 196 N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~----------------------l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 196 NK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN----------------------LSGLELSNNKLEDLPESIG 252 (394)
T ss_pred Cc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhccc----------------------ccccccCCceeeeccchhc
Confidence 43 333444444444455555555432222221113333 4444445555554455555
Q ss_pred CCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccc
Q 046086 679 CLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP 722 (966)
Q Consensus 679 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p 722 (966)
.+++|+.|++++|.+.... . +..+.+|+.|+++++......|
T Consensus 253 ~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceeccccccccccc-c-ccccCccCEEeccCccccccch
Confidence 5555555555555433222 2 5555555555555554444333
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.8e-10 Score=120.38 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=68.5
Q ss_pred ccceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeec
Q 046086 471 TTAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKL 550 (966)
Q Consensus 471 ~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L 550 (966)
.+.++.|.||-.... ..... .....++++|.|+|++|-..+ .+++..+...+++|+.|+|
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~-~~~k~~~~v~~LdLS~NL~~n------------------w~~v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIE-EYSKILPNVRDLDLSRNLFHN------------------WFPVLKIAEQLPSLENLNL 179 (505)
T ss_pred HHhhhheeecCcccc-ccchh-hhhhhCCcceeecchhhhHHh------------------HHHHHHHHHhcccchhccc
Confidence 345566666655543 11111 345556666666666552111 1111122245666666666
Q ss_pred CCCCCcccccc--cccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCC
Q 046086 551 PGSNVEQLWDD--VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESL 626 (966)
Q Consensus 551 ~~n~i~~l~~~--~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l 626 (966)
+.|.+...+.. -..+++|+.|.|+.|.+...-- -+..+|+|+.|+|++|.....-..+...+..|+.|||++|+++
T Consensus 180 s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 180 SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 66666544433 2245666666666665442100 1344566666666666433333334445556666666665543
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=7.8e-08 Score=100.47 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=93.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
.+.+.|+|++|+|||+||+++++.+..+...+.|+..... .....+ +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPA---------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHH---------------------HHhhcc
Confidence 4578999999999999999999987766666777762100 000000 111122
Q ss_pred CCcEEEEEecCCCh---HHHH-HHhcccCCC-CCCcEEEEEeCch----------hhhhcCCcceeEeeccCChhhHHHH
Q 046086 235 RKKVLIVFDDVTHL---KQIE-FLIGRIDWL-ASGSRIIITTRDK----------HVLSNCLVDQIYEVKELLDVDALKL 299 (966)
Q Consensus 235 ~k~~LlVLDdv~~~---~~~~-~l~~~~~~~-~~gs~IIiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~L 299 (966)
+.-+|||||++.. .+|+ .+...++.. ..|..+||+|.+. .+...+.....+++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2248999999763 3333 222222111 2456665544432 4444445566899999999999999
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhh
Q 046086 300 FSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGS 337 (966)
Q Consensus 300 f~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~ 337 (966)
+.+.+......- -.+...-|++++.|..-++..+-.
T Consensus 170 L~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRGIEL--SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHH
Confidence 999886443221 235677888888877655554433
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=6e-08 Score=103.53 Aligned_cols=172 Identities=22% Similarity=0.347 Sum_probs=106.7
Q ss_pred CCCCccccccchH---HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHH
Q 046086 129 NDNKELVGVECPI---NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 129 ~~~~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
...+++||.+.-+ .-|.+++.. ..+.-..+||++|+||||||+.++......|... . ....+..++.
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---s-----Av~~gvkdlr 90 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---S-----AVTSGVKDLR 90 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---c-----cccccHHHHH
Confidence 3445566655444 224444432 4566678999999999999999999877766432 1 1123344443
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecC--CChHHHHHHhcccCCCCCCcEEEE--EeCchhhhh---
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDV--THLKQIEFLIGRIDWLASGSRIII--TTRDKHVLS--- 278 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv--~~~~~~~~l~~~~~~~~~gs~IIi--TTR~~~v~~--- 278 (966)
+.+- ..-+....+++.+|.+|.| -+..|-+.|++... .|.-|+| ||.++...-
T Consensus 91 ~i~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 EIIE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHH
Confidence 2221 1112334588999999999 45667788887654 6777766 666663211
Q ss_pred cCCcceeEeeccCChhhHHHHHhhhhcCCCC--C---CccHHHHHHHHHHHcCCCch
Q 046086 279 NCLVDQIYEVKELLDVDALKLFSRRAFGEDD--P---NASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 279 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~---~~~~~~~~~~iv~~~~G~PL 330 (966)
......++++++|+.++-.+++.+.+..... . ..-..+....++..++|---
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1133468999999999999999884422111 1 11123456778888888653
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=1.3e-09 Score=113.32 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=115.4
Q ss_pred ccccccccceecccCCCCCCCCCC-----CCCCccCcEEeccCccCCccccc-------------cccCCCcccEEeccC
Q 046086 561 DVQNLVNIKEIDLHGSKQLSKLPD-----LSQARNLERLKLDGCSSLMETHS-------------SIQYLNKLEVLDLRL 622 (966)
Q Consensus 561 ~~~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~~~~~~~~~~-------------~l~~l~~L~~L~L~~ 622 (966)
.+...++|++||||.|.+-..-+. ++++++|++|+|.+|.....-.. .+++-++|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 344566778888887765544331 45677788888877754322111 223344555555554
Q ss_pred CCCCcccCCcc------CCCcccEEEecCCCCCCCCcccccCcccEEeecccccc-----cccccccCCCCCCEEeccCC
Q 046086 623 CESLRSLPDTI------CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIE-----DMPLSIECLSKLNSLDIHNC 691 (966)
Q Consensus 623 n~~l~~lp~~~------~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~L~~n 691 (966)
|. ++.-+... ..+ .|+.+.+..|.|. -+-..+..+++|+.|||.+|
T Consensus 167 Nr-len~ga~~~A~~~~~~~----------------------~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 167 NR-LENGGATALAEAFQSHP----------------------TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred cc-cccccHHHHHHHHHhcc----------------------ccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 43 22222111 112 3666666666654 23446788999999999999
Q ss_pred CCcc----cccccccCCCCCcEEEccCCCCCccc----cccccCCCCCCCccEEEcCCCCcc-----ccchHhhcCCCCC
Q 046086 692 TRLE----YIKSSIFKLKSLKHIEISSCSNLKRF----PEISSSCNREGSTEVLHLKGNNLE-----RIPESIRHLSKLK 758 (966)
Q Consensus 692 ~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~~----p~~~~~~~~~~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~ 758 (966)
.+.. .+...++.+++|+.|++++|..-..- .+.+.. ..++|+.|.|.+|.++ .+-..+...+.|.
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~--~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE--SAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc--cCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 7653 34456778899999999999765322 222222 2348999999999987 2344567789999
Q ss_pred EEeecCCCC
Q 046086 759 SLDISYCEW 767 (966)
Q Consensus 759 ~L~L~~n~~ 767 (966)
.|+|++|.+
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 999999986
No 49
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=5.3e-09 Score=112.39 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=177.7
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
...|.+.++|.|||||||++-.+.. +...|....++.+.+......-+... +...+.-. ....+.....+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~---~ag~~gl~---~~~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPT---LAGALGLH---VQPGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHH---HHhhcccc---cccchHHHHHHHHH
Confidence 4568899999999999999999999 88889777666555554443222211 11111111 11112344456677
Q ss_pred hcCCcEEEEEecCCChHH-HHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeeccCChh-hHHHHHhhhhcCCCC-
Q 046086 233 FTRKKVLIVFDDVTHLKQ-IEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKELLDV-DALKLFSRRAFGEDD- 309 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~~-~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~- 309 (966)
..+++.++|+||..+..+ -..+...+....+.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 788999999999977543 333333333335667889999986432 34567788888766 799999887632111
Q ss_pred --CCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHH----HHhc------CCCchHHHHHHHhhcCCChhh
Q 046086 310 --PNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMK----KMEI------VPHMEIQEVLKISYDGLDDHE 377 (966)
Q Consensus 310 --~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~----~l~~------~~~~~i~~~l~~sy~~L~~~~ 377 (966)
-.........+|.++..|.|++|..+++..+.....+..+-++ .+.. ..+......+..||.-|...+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122234578899999999999999999998876555443333 2222 223456778999999999999
Q ss_pred HhHhhhcccccCCCCHHHHHHHHhHcCC-----ChhcchhhhhcCcceeEe----cCEEEecHHHHHHHHHHh
Q 046086 378 QGIFLDISCFLVGEDRDQVMRFLNSCGF-----FAEVGLSVRVDKSLITID----YNTIRMHDFLRDMGREIV 441 (966)
Q Consensus 378 k~~fl~~a~f~~~~~~~~l~~~~~~~g~-----~~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~ 441 (966)
+..|-.++.|...++.+.....-....+ ..-..+..+++++++... .-.++.-+-.+.|+.+..
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888876632222111111 112335677888887654 223333344444444433
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=3e-09 Score=107.76 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=36.2
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCccc-ccccccCCCCCcEEEccCCCCC
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEY-IKSSIFKLKSLKHIEISSCSNL 718 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~~~~l 718 (966)
++++|.|++|.+..+. .++.|-+|..||+++|++... --..++++|.|++|.|.+|+..
T Consensus 353 NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 4666666666666553 366666777777777754321 1235677777777777776543
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1e-08 Score=100.70 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=39.5
Q ss_pred hcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc--cccccceEeecCCCCCccccccc-cccccccee
Q 046086 495 FSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWDDV-QNLVNIKEI 571 (966)
Q Consensus 495 f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L 571 (966)
+.+..+++.|+|.+|....+..+.. ...+|+.|++++|.++.++ ..+.+|++|++++|.|+.+.+++ ..+++|++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~-~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGA-TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--T-T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccccchhh-hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3444567777777774433322221 1256777777777777766 56677777777777777775554 357777777
Q ss_pred cccCCCCCCCCC---CCCCCccCcEEeccCccCCccc---cccccCCCcccEEecc
Q 046086 572 DLHGSKQLSKLP---DLSQARNLERLKLDGCSSLMET---HSSIQYLNKLEVLDLR 621 (966)
Q Consensus 572 ~Ls~n~~~~~~p---~l~~l~~L~~L~L~~~~~~~~~---~~~l~~l~~L~~L~L~ 621 (966)
+|++|++.. +. .++.+++|+.|+|.+|...... ...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777776432 22 2555666777777766544321 1234556666666543
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=2e-08 Score=98.68 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=26.3
Q ss_pred ccEEeeccccccccccccc-CCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccc-cCCCCCCCccEE
Q 046086 660 IHFLDLYECGIEDMPLSIE-CLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEIS-SSCNREGSTEVL 737 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~~~~~L~~L 737 (966)
+++|+|.+|.|+.+. .++ .+.+|+.|+|++|.+... ..+..++.|++|++++|.. ..+++.+ ..+ ++|+.|
T Consensus 21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I-~~i~~~l~~~l---p~L~~L 93 (175)
T PF14580_consen 21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI-SSISEGLDKNL---PNLQEL 93 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH----TT--EE
T ss_pred ccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC-CccccchHHhC---CcCCEE
Confidence 444555555555442 233 345555555555544322 1244455556666655332 2232222 122 256666
Q ss_pred EcCCCCccccc--hHhhcCCCCCEEeecCCCCc
Q 046086 738 HLKGNNLERIP--ESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 738 ~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l 768 (966)
+|++|+|..+. ..+..+++|+.|+|.+|+..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666655433 24556666777777766654
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=6.2e-08 Score=116.24 Aligned_cols=108 Identities=25% Similarity=0.290 Sum_probs=74.4
Q ss_pred ccEEeecccccc-cccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEE
Q 046086 660 IHFLDLYECGIE-DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLH 738 (966)
Q Consensus 660 L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~ 738 (966)
++.|+|++|.++ .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+..+.+|+.+..+. +|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~---~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT---SLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC---CCCEEE
Confidence 566667776666 5666777777777777777777777777777777777777777777677776666544 677777
Q ss_pred cCCCCcc-ccchHhhcC-CCCCEEeecCCCCccc
Q 046086 739 LKGNNLE-RIPESIRHL-SKLKSLDISYCEWLHT 770 (966)
Q Consensus 739 Ls~n~l~-~lp~~i~~l-~~L~~L~L~~n~~l~~ 770 (966)
|++|+++ .+|..+..+ .++..+++.+|..+..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 7777776 677666543 4556677777665443
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.62 E-value=7.8e-07 Score=93.32 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=103.5
Q ss_pred CCcccc--ccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH
Q 046086 131 NKELVG--VECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL 208 (966)
Q Consensus 131 ~~~~vG--r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 208 (966)
.++|++ .+..++++.+++.. ...+.+.|+|++|+|||+||+.++++........+|+... ..... . ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~~~~~--~----~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-ELAQA--D----PEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-HHHHh--H----HHH
Confidence 345652 44567777777542 3456799999999999999999999876555455566521 11100 0 000
Q ss_pred HHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH---H-HHHHhcccCC-CCCCcEEEEEeCchh--------
Q 046086 209 LSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK---Q-IEFLIGRIDW-LASGSRIIITTRDKH-------- 275 (966)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~~-------- 275 (966)
+ ..+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 ~---------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 85 L---------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H---------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 11122 2389999996542 1 2333322211 123457889888542
Q ss_pred -hhhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhh
Q 046086 276 -VLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSF 338 (966)
Q Consensus 276 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~ 338 (966)
+.........+++++++.++...++...+-..... --.+..+.+++.+.|+|..+..+...
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 11122223578999999999999988765322211 12355677888899999777666433
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.61 E-value=1.9e-06 Score=98.44 Aligned_cols=178 Identities=22% Similarity=0.338 Sum_probs=107.4
Q ss_pred cCCCCccccccchHHH---HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINE---IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...+++||.+..+.. +.+++.. ...+.+.++|++|+||||+|+.+++.....|. .+... ..+...+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~-----~~~~~~i 77 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAV-----TSGVKDL 77 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEecc-----cccHHHH
Confidence 3455679999888766 7777754 34567889999999999999999997755442 11111 1111111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHH-HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEE--EeCchh--hh
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSK-RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIII--TTRDKH--VL 277 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIi--TTR~~~--v~ 277 (966)
. +++. .... ...+++.+|++|+++.. .+.+.++..+. .|..++| ||.+.. +.
T Consensus 78 r-~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 78 R-EVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVN 136 (413)
T ss_pred H-HHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhcc
Confidence 1 1111 1111 11457789999999764 45566665543 3555554 334332 11
Q ss_pred hc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCC-ccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 278 SN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPN-ASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 278 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
.. ......+++++++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+.
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11 11235789999999999999988653211110 1224567889999999987654443
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.60 E-value=6.6e-07 Score=104.69 Aligned_cols=244 Identities=14% Similarity=0.090 Sum_probs=126.9
Q ss_pred CCCccccccchHHHHHHhhhc---CCCCceEEEEeecCCCchhHHHHHHHHHhhcc-----CC--ceEEEEeehhhhccC
Q 046086 130 DNKELVGVECPINEIESLLRT---GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----FE--GSYFAHNVQEAQENG 199 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~~~~ 199 (966)
.++.+.|||.++++|...|.. +.....++.|+|++|.|||+.++.|.+++... .+ .++++.+.. ..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----VV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----cC
Confidence 457899999999999998863 22333567899999999999999999876432 12 234444321 12
Q ss_pred CHHHHHHHHHHHHhCCCC-CCCChhhhHHHHHHHhc---CCcEEEEEecCCChH--HHHHHhcccCCC-CCCcEEEE--E
Q 046086 200 GLAHLRQQLLSTLLNDRN-VKNSPNIVLNFQSKRFT---RKKVLIVFDDVTHLK--QIEFLIGRIDWL-ASGSRIII--T 270 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs~IIi--T 270 (966)
....+...+..++..... ...........+...+. +...+||||+|+... +-+.|...+.|. ..+++|+| +
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 334455555555533322 11122233444444331 234589999997543 212222212221 24555544 3
Q ss_pred eCchh--------hhhcCCcceeEeeccCChhhHHHHHhhhhcCCC-CCCcc-HHHHHHHHHHHcCCCchhHHhHhhhhc
Q 046086 271 TRDKH--------VLSNCLVDQIYEVKELLDVDALKLFSRRAFGED-DPNAS-YKELTQEAVKYAKGVPLALKVLGSFLF 340 (966)
Q Consensus 271 TR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~-~~~~~~~iv~~~~G~PLal~~~g~~L~ 340 (966)
|.+.. +...++ ...+..++++.++-.+++..++-... ...++ ..-+|+.++...|-.=.||.++-.+..
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 43322 111222 22466799999999999999885321 11222 222233233222333455555443332
Q ss_pred C-----CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcc
Q 046086 341 G-----RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDIS 385 (966)
Q Consensus 341 ~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 385 (966)
. ...+....+...+.. ..+.-....||.++|-+++.+.
T Consensus 988 ikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 1 122333333333321 1122334578888887665443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=1.7e-07 Score=102.89 Aligned_cols=167 Identities=21% Similarity=0.354 Sum_probs=78.5
Q ss_pred CCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeeccc-ccccccccccCCCCCCEEeccC
Q 046086 612 LNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYEC-GIEDMPLSIECLSKLNSLDIHN 690 (966)
Q Consensus 612 l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n-~i~~lp~~~~~l~~L~~L~L~~ 690 (966)
+++++.|++++| .+..+|. -..+|+.|.+++|..+..+|.....+|+.|++++| .+..+|. +|+.|+++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeCC
Confidence 344444444444 3344441 11235555555555554444444344555555554 4444443 244444443
Q ss_pred CCC--cccccccccCCCCCcEEEccCCCCC--ccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCC
Q 046086 691 CTR--LEYIKSSIFKLKSLKHIEISSCSNL--KRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCE 766 (966)
Q Consensus 691 n~~--~~~~p~~l~~l~~L~~L~Ls~~~~l--~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~ 766 (966)
+.. ++.+|. +|+.|.+.+++.. ..+|. ..+++|++|++++|....+|..+. .+|+.|.++.|.
T Consensus 122 n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 122 SATDSIKNVPN------GLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCcccccCcc------hHhheecccccccccccccc-----ccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 321 233333 3455555432211 11111 122377777777777665554433 477778877653
Q ss_pred Cc---cccCCCCCCcceeecccCcccc--cccCCCCccCc
Q 046086 767 WL---HTLPELPRNLYHLEAHHCTLLE--ALSGFSLTHNN 801 (966)
Q Consensus 767 ~l---~~lp~~~~~L~~L~~~~c~~L~--~L~~l~ls~N~ 801 (966)
.. -..+.+|+++ .|.+.+|-.+. .+....+.+|.
T Consensus 189 ~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~ 227 (426)
T PRK15386 189 KTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQG 227 (426)
T ss_pred cccccCccccccccc-EechhhhcccCHHHhhcccccccC
Confidence 11 1122345666 77777764432 24444455544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.55 E-value=2.4e-07 Score=101.75 Aligned_cols=130 Identities=21% Similarity=0.391 Sum_probs=78.8
Q ss_pred CCcccEEEecCCCCCCCCcccccCcccEEeecc-cccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEcc
Q 046086 635 SESLFELRLWGCLNLKNFPEISSSHIHFLDLYE-CGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEIS 713 (966)
Q Consensus 635 l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~-n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls 713 (966)
+..++.|++++| .+..+|. +..+|+.|.+++ +.++.+|..+ .++|+.|++++|..+..+|. +|+.|+++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 467788888887 5666773 333588888876 4455666544 35778888887755555553 36666665
Q ss_pred CCC--CCccccccccCCCCCCCccEEEcCCCCcc---ccchHhhcC-CCCCEEeecCCCCccccCCCCCCcceeecccC
Q 046086 714 SCS--NLKRFPEISSSCNREGSTEVLHLKGNNLE---RIPESIRHL-SKLKSLDISYCEWLHTLPELPRNLYHLEAHHC 786 (966)
Q Consensus 714 ~~~--~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~---~lp~~i~~l-~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c 786 (966)
++. .++.+|. +|+.|.+.+++.. .+|. .+ ++|++|++++|......+.+|.+|+.|.++.+
T Consensus 121 ~n~~~~L~~LPs---------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKNVPN---------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCcccccCcc---------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 422 1233332 5666766543311 2221 12 57888888888866544447778888877543
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=113.59 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=81.2
Q ss_pred cceEeecCCCCCc-ccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEecc
Q 046086 544 NLVSLKLPGSNVE-QLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLR 621 (966)
Q Consensus 544 ~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 621 (966)
.++.|+|++|.+. .+|..+.++++|+.|+|++|.+.+.+| .++.+++|+.|+|++|.+.+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888887 677778888888888888888777777 47888888888888888888888888888888888888
Q ss_pred CCCCCcccCCccC--CCcccEEEecCCCCC
Q 046086 622 LCESLRSLPDTIC--SESLFELRLWGCLNL 649 (966)
Q Consensus 622 ~n~~l~~lp~~~~--l~~L~~L~L~~~~~l 649 (966)
+|.+.+.+|..+. ..++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 8888888887662 234556666666543
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.53 E-value=9.2e-07 Score=88.66 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=97.6
Q ss_pred cCCCCccccccchHHHHHHhhhc---CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRT---GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...++|||.+..++.+.-++.. ..+...-+.+||++|.||||||..++++....|. +... ..... ..++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k---~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEK---AGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--S---CHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhh---HHHH
Confidence 45678999999999887766642 2344667899999999999999999999877663 2221 00011 1111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCC--hHHHHHHhcccCCC--------CCCc---------
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTH--LKQIEFLIGRIDWL--------ASGS--------- 265 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~~~~~--------~~gs--------- 265 (966)
+ ..+ ..++ ++-+|.+|++.. ..+-+.|.+....+ +++.
T Consensus 93 ~---------------------~il-~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 A---------------------AIL-TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp H---------------------HHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred H---------------------HHH-HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1 111 1122 344777899955 34445554433221 2222
Q ss_pred --EEEEEeCchhhhhcCC--cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 266 --RIIITTRDKHVLSNCL--VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 266 --~IIiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
-|=-|||...+..... ..-..+++..+.+|-.++..+.+-.-.. .-..+.+.+|++++.|-|--..-+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHH
Confidence 2335787765443332 2235679999999999999887743322 223467899999999999544433
No 61
>PTZ00202 tuzin; Provisional
Probab=98.52 E-value=8e-06 Score=89.12 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHh-------------hccCCCCCCCCc-hh-HHHHHHHHhhhhcccc------cccCCCCccccccchH
Q 046086 83 MRKRWRNALTEAA-------------NLSGFNSHVIRP-ES-KLIEEIADEVLKRLDD------TFENDNKELVGVECPI 141 (966)
Q Consensus 83 ~~~~w~~al~~~~-------------~~~g~~~~~~~~-e~-~~i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~l 141 (966)
+-+.||-++++-+ ...||..+..+. +. -.+.-.++.+.+.++. ..|.+...|+||+.++
T Consensus 192 kerd~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEl 271 (550)
T PTZ00202 192 KERDFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEE 271 (550)
T ss_pred HhhhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHH
Confidence 4456777765432 333555542221 21 2233345555555443 3477889999999999
Q ss_pred HHHHHhhhcCC-CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCC
Q 046086 142 NEIESLLRTGS-AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKN 220 (966)
Q Consensus 142 ~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 220 (966)
.+|...|...+ ...+++.|.|++|+|||||++.+..... ...++.+.+ +..++...++.+++.... .
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~--~ 339 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV--E 339 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc--c
Confidence 99999997432 3356999999999999999999997654 224554332 557888888888875322 1
Q ss_pred ChhhhHHHHHHHh-----c-CCcEEEEEe--cCCChHH-HHHHhcccCCCCCCcEEEEEeCchhhhhc---CCcceeEee
Q 046086 221 SPNIVLNFQSKRF-----T-RKKVLIVFD--DVTHLKQ-IEFLIGRIDWLASGSRIIITTRDKHVLSN---CLVDQIYEV 288 (966)
Q Consensus 221 ~~~~~~~~l~~~L-----~-~k~~LlVLD--dv~~~~~-~~~l~~~~~~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l 288 (966)
...++...+.+.+ . +++.+||+- +-.+..- ..+.. .+..-..-|+|++----+.+... ...-..|.+
T Consensus 340 ~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~v 418 (550)
T PTZ00202 340 ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLV 418 (550)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEec
Confidence 1223444444433 2 667777763 2233221 11111 11111344667664333322111 122357899
Q ss_pred ccCChhhHHHHHhhhh
Q 046086 289 KELLDVDALKLFSRRA 304 (966)
Q Consensus 289 ~~L~~~ea~~Lf~~~a 304 (966)
+.++.++|.++-.+..
T Consensus 419 p~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 419 PNFSRSQAFAYTQHAI 434 (550)
T ss_pred CCCCHHHHHHHHhhcc
Confidence 9999999988876543
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=4.8e-06 Score=97.47 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=112.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--CCceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--FEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+... ... ...+.-...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-----------~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-----------QPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-----------CCCcccHHH
Confidence 4456789999999999999986532 24566799999999999999999876321 100 000000000
Q ss_pred HHHHHH----HhC-CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCch
Q 046086 206 QQLLST----LLN-DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 206 ~~ll~~----l~~-~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
..+... +.. +.......++..+.+... ..++.-++|||+++... .+..|+..+.......++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 000000 000 000001111111111111 12344578899997764 3666766665556788888888877
Q ss_pred hhhh-c-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHh
Q 046086 275 HVLS-N-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP-LALKV 334 (966)
Q Consensus 275 ~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~ 334 (966)
.-.. . ......+.++.++.++..+.+.+.+-..... -..+....|++.++|.. -||..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4332 1 1223578999999999999988776432221 12355778889998865 34444
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.3e-09 Score=107.63 Aligned_cols=180 Identities=24% Similarity=0.327 Sum_probs=111.8
Q ss_pred ccceEeecCCCCCc--ccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCcccc--ccccCCCcccE
Q 046086 543 ENLVSLKLPGSNVE--QLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETH--SSIQYLNKLEV 617 (966)
Q Consensus 543 ~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~ 617 (966)
..|++|||+...|+ ++-.-+..+.+|+.|.|.++++-..+- .+.+-.+|+.|+|+.|....... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35888999998887 444447788888888888887554443 36777888888888887555432 23567888888
Q ss_pred EeccCCCCCcccCCcc---CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCc
Q 046086 618 LDLRLCESLRSLPDTI---CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRL 694 (966)
Q Consensus 618 L~L~~n~~l~~lp~~~---~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~ 694 (966)
|+|+.|......-..+ -.+.|+.|+|+||... + +.+.+..-...+++|..|||++|..+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------l---~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------L---QKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------h---hhhHHHHHHHhCCceeeecccccccc
Confidence 8888876544331111 2245556666665321 0 01122222456788888888887654
Q ss_pred cc-ccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCC
Q 046086 695 EY-IKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGN 742 (966)
Q Consensus 695 ~~-~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n 742 (966)
.. .-..|.+++.|++|.++.|.. ..|+.+-.++..++|.+|+..++
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 32 334466788888888888753 34554444444445555555544
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=4.1e-06 Score=93.71 Aligned_cols=200 Identities=15% Similarity=0.086 Sum_probs=108.9
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-C-ceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-E-GSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~-~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|...++++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+.... . ..+++. ....... ....+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhh
Confidence 444578999999999999988643 345688999999999999999999775432 2 223333 2111000 000000
Q ss_pred HH--HHHHHhCCCC-CCCChhhhHHHHHHHh-----cCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 206 QQ--LLSTLLNDRN-VKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 206 ~~--ll~~l~~~~~-~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
.. .......... .....+.....++... ...+-+||+||++... ..+.+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00 0000000000 0000111111111111 1334489999997542 23344443333345678888875432
Q ss_pred -hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 276 -VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 276 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
+.... .....+++.+++.++..+++...+-..... -..+....++++++|.+-.+.
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 223577889999999998888866432221 123567888899988765443
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.46 E-value=5.7e-06 Score=91.31 Aligned_cols=182 Identities=15% Similarity=0.207 Sum_probs=106.7
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
|....+++|.+..++.|.+++.. ...+.+.++|++|+||||+|+.+++.+.. .|...+.-.+. +...+...+.+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~~~~vr~ 83 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRGIDVVRN 83 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccccHHHHHH
Confidence 45567899999989999888764 33455789999999999999999998633 33222111111 11122222221
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-Cc
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LV 282 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~ 282 (966)
............ -.++.-++|+|+++... ....+...+...+..+++|+++... .+.... ..
T Consensus 84 -~i~~~~~~~~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 84 -KIKMFAQKKVTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred -HHHHHHhccccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 111111100000 01345689999997642 3444544444445667887777543 222111 12
Q ss_pred ceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 283 DQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 283 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
...++++++++++..+.+...+-.....- ..+....+++.++|..-
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 34789999999999988887764332211 13457888899988663
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=1e-06 Score=83.65 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=75.9
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc-----CCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----FEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNF 228 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 228 (966)
+.+.+.|+|.+|+|||++++.++++.... -..++|+. . ........+.+.++..+................
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 34679999999999999999999977543 23445554 2 222377888999998888765554556666777
Q ss_pred HHHHhcCCc-EEEEEecCCCh---HHHHHHhcccCCCCCCcEEEEEeCc
Q 046086 229 QSKRFTRKK-VLIVFDDVTHL---KQIEFLIGRIDWLASGSRIIITTRD 273 (966)
Q Consensus 229 l~~~L~~k~-~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~ 273 (966)
+.+.+...+ .+||+|+++.. +.++.+....+ ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776554 59999999765 33555544333 677788887776
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.46 E-value=2e-06 Score=96.77 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=103.2
Q ss_pred CCCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
....+.|++..+++|.+.+... -...+-+.++|++|+|||++|++++++....| +....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch-----
Confidence 4467899999999998877421 12245689999999999999999999876554 21110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
..+....... ........+...-...+.+|++|+++... .+..+...+...
T Consensus 190 ---~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111111000 00011111222223467899999986531 133333333222
Q ss_pred -CCCcEEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCCCCC-ccHHHHHHHHHHHcCCCc
Q 046086 262 -ASGSRIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGEDDPN-ASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~iv~~~~G~P 329 (966)
..+.+||.||....... ....+..++++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 24677888888553322 223456899999999999999998875543222 22 355666776654
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.1e-06 Score=92.57 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=109.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|...++++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ....+.-....+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~c~~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRKCIICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHH
Confidence 344578999999999999988653 2345678999999999999999998764211000 000000000000
Q ss_pred HHHHH----hC-CCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 208 LLSTL----LN-DRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 208 ll~~l----~~-~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
+.... .. ........++. ..+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HhcCCCCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 00000 00 00000011111 1111111 2345589999997754 46667766665566777777776543
Q ss_pred -hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 276 -VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 276 -v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
+... .+....+++++++.++..+.+...+-.....- ..+.+..|++.++|.|-.
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 3222 12236889999999999988887664322111 124577889999998853
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3.7e-08 Score=112.98 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=44.4
Q ss_pred CceeEEEecCCCCcccc---cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCc
Q 046086 523 TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGC 599 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~ 599 (966)
.+|..|++.+|.++.+. ..+.+|++|+|++|.|+.+ .++..++.|+.|++++|. +..++.+..+++|+.+++++|
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcc
Confidence 34444444444443333 2344555555555555544 334444445555555554 233344444555555555554
Q ss_pred cCCcccc-ccccCCCcccEEeccCC
Q 046086 600 SSLMETH-SSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 600 ~~~~~~~-~~l~~l~~L~~L~L~~n 623 (966)
.+...-+ . ...+.+|+.+.+.+|
T Consensus 173 ~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 173 RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhhhhhhh-hhhccchHHHhccCC
Confidence 4332222 1 344444444444444
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.43 E-value=1.2e-05 Score=89.11 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=107.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++++........++... .+...+...+.+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~~~~~~~ 88 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN--ASDERGIDVIRNK 88 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec--cccccchHHHHHH
Confidence 445567999999999999998643 344579999999999999999999764332111222210 0111111111111
Q ss_pred HHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhc-CCcc
Q 046086 208 LLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSN-CLVD 283 (966)
Q Consensus 208 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~ 283 (966)
+ ........ .-...+-++++|+++.. +....+...+....+.+++|+++.... +... ....
T Consensus 89 i-~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 89 I-KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred H-HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1 11110000 00123458899998754 234455544444456677887775432 2111 1123
Q ss_pred eeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 284 QIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 284 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
..+++++++.++....+...+-.....- ..+.+..+++.++|.+--
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 4689999999999888888774332211 134578889999998754
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.4e-05 Score=90.72 Aligned_cols=191 Identities=16% Similarity=0.091 Sum_probs=112.6
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc--cCCceEEEEeehhhhc---cCCHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR--HFEGSYFAHNVQEAQE---NGGLA 202 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~---~~~~~ 202 (966)
|...++++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+....... ..++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 3445679999999999998887532 2356799999999999999999987642 2222333321100000 00000
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHH-----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKR-----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK- 274 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 274 (966)
. +... .....+... .+.+. ..+++-++|+|+++.. ..+..++..+....+...+|++|...
T Consensus 89 e--------l~~~--~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 89 E--------IDAA--SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred E--------eccc--ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0 0000 000111111 11111 1245568899999754 45677776666555666666666543
Q ss_pred hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 275 HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 275 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
.+.... .....+++.+++.++..+.+.+.+-...... ..+.+..|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 332221 2345899999999999999988774433221 2355788999999988533
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=2e-06 Score=83.12 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=71.3
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhC
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLN 214 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 214 (966)
+|++..+.++...+.. +..+.+.|+|.+|+||||+|+.+++.+...-..++++. ......... ..... ...
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~---~~~~~-~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLV---VAELF-GHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhH---HHHHh-hhh--
Confidence 4788888999888854 24567999999999999999999998754333444444 211111100 00000 000
Q ss_pred CCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--H---HHHHHhcccCCC---CCCcEEEEEeCchh
Q 046086 215 DRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--K---QIEFLIGRIDWL---ASGSRIIITTRDKH 275 (966)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~---~~~~l~~~~~~~---~~gs~IIiTTR~~~ 275 (966)
............++.++|+||++.. . .+.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864 2 233333333221 36778888888663
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=5.9e-07 Score=90.93 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 133 ELVGVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233456899999999999999999999988776
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=1.2e-05 Score=93.92 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=109.0
Q ss_pred ccCCCCccccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
.|....+++|.+..++++..++..- ....+.+.|+|++|+||||+|+.+++++. |+. +.+. . +...... .
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~r~~~-~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQRTAD-V 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---cccccHH-H
Confidence 3556678999999999999998632 12267899999999999999999999873 221 2221 1 1111111 2
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH------HHHHHhcccCCCCCCcEEEEEeCchhhhh
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK------QIEFLIGRIDWLASGSRIIITTRDKHVLS 278 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IIiTTR~~~v~~ 278 (966)
..++........ .....++-+||+|+++... .+..+...+. ..+..||+|+.+..-..
T Consensus 81 i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 222222211110 0011356799999997642 2444544333 24455777665442111
Q ss_pred ---cCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 279 ---NCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 279 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.......+++++++.++....+...+......- -.+....|++.++|..-.+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 112345788999999999888877664332221 135678899999987654433
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2e-05 Score=91.42 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=110.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+..... ... ...+.-...+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-----~pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-----TPCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-----CCCccCHHHHH
Confidence 3456789999999999999987542 2467899999999999999999987632110 000 00000000000
Q ss_pred HHHH----HhC-CCCCCCChhhhHHHHHH----HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhh
Q 046086 208 LLST----LLN-DRNVKNSPNIVLNFQSK----RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHV 276 (966)
Q Consensus 208 ll~~----l~~-~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v 276 (966)
+... +.. ........++..+.+.. -..+++-++|+|+|+.. .....++..+.....+.++|++|.+..-
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 0000 000 00000111111111111 11345568899999765 3566666665554567788888876532
Q ss_pred hh-c-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 277 LS-N-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 277 ~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
.. . ......+++++++.++..+.+.+.+-..... -..+....|++.++|.+-.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 21 1 1233588999999999998888776433221 1234577889999997743
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.37 E-value=8.3e-06 Score=85.47 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=96.8
Q ss_pred CCccccccc-hHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHH
Q 046086 131 NKELVGVEC-PINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLL 209 (966)
Q Consensus 131 ~~~~vGr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 209 (966)
.++|++... .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+... + ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-A---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-H---------hhhhHH
Confidence 345665443 3343443332 2 2234599999999999999999999877665566676511 1 111110
Q ss_pred HHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH---HH-HHHhcccCC-CCCCcEEEEEeCchh---------
Q 046086 210 STLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK---QI-EFLIGRIDW-LASGSRIIITTRDKH--------- 275 (966)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IIiTTR~~~--------- 275 (966)
.. .+.+ .+.-+||+||++... .+ +.+...... ...|..||+|++...
T Consensus 86 -----------------~~-~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 -----------------DA-LEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -----------------HH-HHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 01 1111 123489999996431 12 222222111 134667999998641
Q ss_pred hhhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 276 VLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 276 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
+.........+++++++.++-.+++.+++...... --.+....+++.+.|-.-++
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 11222234588999999999999999877532221 12355677777777655433
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=4.4e-06 Score=87.61 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCccc-cccchH-HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH
Q 046086 131 NKELV-GVECPI-NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL 208 (966)
Q Consensus 131 ~~~~v-Gr~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 208 (966)
.++|+ |..... ..+.++.. +....+.+.|+|.+|+|||+||+.+++.....-....++..... ...+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~----------~~~~ 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP----------LLAF 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh----------HHHH
Confidence 44555 554443 34444443 22345678999999999999999999976443334455542110 0000
Q ss_pred HHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCC-CCCc-EEEEEeCchhhhh------
Q 046086 209 LSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWL-ASGS-RIIITTRDKHVLS------ 278 (966)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~-~~gs-~IIiTTR~~~v~~------ 278 (966)
... ...-+||+||++.. .+.+.+...+... ..+. .+|+|++......
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 001 12337889999653 2223332222111 2333 4666666432111
Q ss_pred --cCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhh
Q 046086 279 --NCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFL 339 (966)
Q Consensus 279 --~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L 339 (966)
.+.....++++++++++-.+++.+.+-.....- -.+....+++.+.|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112235889999999887777765442222111 23567788888999998877766554
No 78
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=2e-06 Score=81.06 Aligned_cols=119 Identities=18% Similarity=0.109 Sum_probs=76.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
+++.|.|+.|+||||++++++++.. .....+|+....... .... .. +..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-----~~~~---------------~~-~~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-----RRLA---------------DP-DLLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-----HHHh---------------hh-hhHHHHHHhhcc
Confidence 6899999999999999999998765 334455554211100 0000 00 022233333334
Q ss_pred CcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcC------CcceeEeeccCChhhH
Q 046086 236 KKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNC------LVDQIYEVKELLDVDA 296 (966)
Q Consensus 236 k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 296 (966)
++.+|+||+|....+|...+..+...++..+|++|+......... +....+++.+|+..|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 678999999988887777666555445678999999988665321 2234678999987763
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=4.3e-05 Score=85.02 Aligned_cols=200 Identities=12% Similarity=0.052 Sum_probs=111.8
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cC-CceEEEEeehhhhccCCHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HF-EGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F-~~~~~~~~~~~~~~~~~~~~l 204 (966)
.|....+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+-. .- .......... .....+-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChH
Confidence 3556678999999999999998754 22446889999999999999999986532 11 1000000000 0000000011
Q ss_pred HHHHHHHHhC----------CCC----CCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 205 RQQLLSTLLN----------DRN----VKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 205 ~~~ll~~l~~----------~~~----~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
.+.+...... ++. ..-.+++ +..+.+.+ .+++-++|+|+++.. .....|+..+....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 1111100000 000 0001112 12222222 245678999999654 345556555544456
Q ss_pred CcEEEEEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 264 GSRIIITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 264 gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
++.+|++|.+.. +... ......+.+.+++.++..+++...... ..+ +....++..++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 677777777664 3222 123468899999999999999876411 111 12267899999999865544
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.6e-05 Score=93.29 Aligned_cols=187 Identities=15% Similarity=0.108 Sum_probs=113.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-C-Cc-eEEEEee-hh---------
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-F-EG-SYFAHNV-QE--------- 194 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~-~~--------- 194 (966)
|....++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... . .. .|..+.. ..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 345578999999999999988643 223456899999999999999999976432 1 00 0111000 00
Q ss_pred ----hhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEE
Q 046086 195 ----AQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRII 268 (966)
Q Consensus 195 ----~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~II 268 (966)
.....+...+ +++...+. ..-..+++-++|||+++.. +....|+..+.......++|
T Consensus 91 iEidAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 0000111111 11111110 0112356679999999664 55777777666556677777
Q ss_pred EEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHh
Q 046086 269 ITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKV 334 (966)
Q Consensus 269 iTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~ 334 (966)
++|.+.. +... ......|++++|+.++..+.+.+.+-.... .-..+.+..|++.++|.|- |+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7666553 3322 122368999999999999998876633211 1123567889999999885 4433
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.8e-05 Score=87.77 Aligned_cols=243 Identities=17% Similarity=0.185 Sum_probs=144.5
Q ss_pred CCccccccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCc--eEEEEeehhhhccCCHHHHHH
Q 046086 131 NKELVGVECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG--SYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~ 206 (966)
++.+.+||.+++++...|.. .+....-+.|+|.+|.|||+.++.+++++...... ++++.+. .......+..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHHHH
Confidence 44599999999999988762 11223348999999999999999999988766433 4666533 3445567777
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhc--CCcEEEEEecCCChH-----HHHHHhcccCCCCCCcEE--EEEeCchhhh
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFT--RKKVLIVFDDVTHLK-----QIEFLIGRIDWLASGSRI--IITTRDKHVL 277 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~I--IiTTR~~~v~ 277 (966)
+++..+...........+....+.+.+. ++.++||||+++... .+-.|....... .++| |..+-+....
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHH
Confidence 7777776444334444566666666664 578999999996643 233343332222 4444 3444444322
Q ss_pred h--------cCCcceeEeeccCChhhHHHHHhhhh---cCCCCCCccHHHHHHHHHHHcCCCc-hhHHhHhhh--hcC--
Q 046086 278 S--------NCLVDQIYEVKELLDVDALKLFSRRA---FGEDDPNASYKELTQEAVKYAKGVP-LALKVLGSF--LFG-- 341 (966)
Q Consensus 278 ~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~~g~~--L~~-- 341 (966)
. ..+.. .+..++-+.+|-.+.+..++ |......++..+++..++.+.+|-. .||..+-.. +..
T Consensus 170 ~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 170 DYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 2 22222 36788888888888888876 4444555556666667777777632 333332221 111
Q ss_pred ----CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccc
Q 046086 342 ----RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCF 387 (966)
Q Consensus 342 ----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 387 (966)
.+.+.-..+.... -.....-....|+.++|-.+..++..
T Consensus 249 ~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 249 GSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred CCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 0111111111111 12233344678898888877666554
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=3.5e-06 Score=88.28 Aligned_cols=150 Identities=17% Similarity=0.312 Sum_probs=94.2
Q ss_pred cCCCCccccccchHHH---HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINE---IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...++.||.+..+-+ |.+++ +.+...-+.+||++|.||||||+.++..-+.+- ..|+..........+++.+
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHH
Confidence 4445667777666543 33333 235677889999999999999999998655442 4455533222222233333
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecC--CChHHHHHHhcccCCCCCCcEEEE--EeCchhhh---
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDV--THLKQIEFLIGRIDWLASGSRIII--TTRDKHVL--- 277 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv--~~~~~~~~l~~~~~~~~~gs~IIi--TTR~~~v~--- 277 (966)
.++-- -...+.++|.+|.+|.| .+..|-+.+++.. ..|.-++| ||.++..-
T Consensus 210 fe~aq-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 210 FEQAQ-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHH-------------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhH
Confidence 22210 11234678899999999 4456666676654 37776666 77776321
Q ss_pred hcCCcceeEeeccCChhhHHHHHhhh
Q 046086 278 SNCLVDQIYEVKELLDVDALKLFSRR 303 (966)
Q Consensus 278 ~~~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (966)
.......++.++.|+.++...++.+.
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHH
Confidence 11233458899999999999888874
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=1.5e-07 Score=98.41 Aligned_cols=233 Identities=14% Similarity=0.071 Sum_probs=129.9
Q ss_pred cccccccceecccCCCCCCCCC-----CCCCCccCcEEeccCccCCcc----cc-------ccccCCCcccEEeccCCCC
Q 046086 562 VQNLVNIKEIDLHGSKQLSKLP-----DLSQARNLERLKLDGCSSLME----TH-------SSIQYLNKLEVLDLRLCES 625 (966)
Q Consensus 562 ~~~l~~L~~L~Ls~n~~~~~~p-----~l~~l~~L~~L~L~~~~~~~~----~~-------~~l~~l~~L~~L~L~~n~~ 625 (966)
+..+..++.|+||+|.+-..-. .+.+.++|+..++++- .++. +| ..+..+++|++|+||+|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 5567889999999997654432 2666778888888863 3332 33 3455677899999999876
Q ss_pred CcccCCcc-----CCCcccEEEecCCCCCCCCccc---------------ccCcccEEeecccccccccc-----cccCC
Q 046086 626 LRSLPDTI-----CSESLFELRLWGCLNLKNFPEI---------------SSSHIHFLDLYECGIEDMPL-----SIECL 680 (966)
Q Consensus 626 l~~lp~~~-----~l~~L~~L~L~~~~~l~~~p~~---------------~~~~L~~L~L~~n~i~~lp~-----~~~~l 680 (966)
-...+..+ ...+|++|.|.+|..-..--.. ....|+.+...+|++..-+. .+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 54444333 5677888888888532110000 11157777777776664332 35556
Q ss_pred CCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCCCCccccccc-cCCCCCCCccEEEcCCCCccc-----cchH
Q 046086 681 SKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCSNLKRFPEIS-SSCNREGSTEVLHLKGNNLER-----IPES 750 (966)
Q Consensus 681 ~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~~~~~L~~L~Ls~n~l~~-----lp~~ 750 (966)
+.|+.+.+..|.+.. .+...+..+++|+.|||.+|.....-...+ ..++.+++|+.|++++|.++. +-..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 677777777765432 223445566777777777654432111100 011122366777777776651 2222
Q ss_pred h-hcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 751 I-RHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 751 i-~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
+ ...|+|+.|.|.+|.+...--. .|.+. ....+.|..|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~------~la~~-~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAAL------ALAAC-MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHH------HHHHH-HhcchhhHHhcCCcccc
Confidence 2 3356677777777665321100 00000 01144556677888876
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=4.8e-05 Score=87.46 Aligned_cols=186 Identities=20% Similarity=0.175 Sum_probs=107.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc----CC-----------------ce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH----FE-----------------GS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 186 (966)
|...+++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 4456789999988888888876432 23457899999999999999999875321 10 11
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
..+.. ....+...+. ++...... .-..+++-++|+|+++.. ++.+.|+..+......
T Consensus 89 ~el~a----a~~~gid~iR-~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDA----ASNRGIDEIR-KIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeC----cccCCHHHHH-HHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11110 0011121111 11111000 012345668999999764 3456666665544444
Q ss_pred cEEEEEeCc-hhhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHhHhh
Q 046086 265 SRIIITTRD-KHVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV-PLALKVLGS 337 (966)
Q Consensus 265 s~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~-PLal~~~g~ 337 (966)
..+|++|.+ ..+.... .....+++.+++.++....+...+......- ..+....|+++++|- +.|+..+-.
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555544 2332221 2335889999999999888887764322111 134567788878654 566665544
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=1.2e-05 Score=84.15 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=89.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
.+.+.|+|..|+|||.|++++++.+..+-..++|+.. .+ +... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~---------~~~~------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE---------LLDR------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH---------HHhh------------------hHHHHHhhh
Confidence 3578999999999999999999987655456677752 11 1110 011222232
Q ss_pred CCcEEEEEecCCCh---HHHHH-HhcccCC-CCCCcEEEEEeCchh-hh--------hcCCcceeEeeccCChhhHHHHH
Q 046086 235 RKKVLIVFDDVTHL---KQIEF-LIGRIDW-LASGSRIIITTRDKH-VL--------SNCLVDQIYEVKELLDVDALKLF 300 (966)
Q Consensus 235 ~k~~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IIiTTR~~~-v~--------~~~~~~~~~~l~~L~~~ea~~Lf 300 (966)
+-. +||+||+... .+++. +...++. ...|.+||+|++... -. ..+....++++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6788999532 23322 3322221 135678899887542 11 11233467899999999999999
Q ss_pred hhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 301 SRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
..++......- -.++...+++++.|-.-++..+-
T Consensus 176 ~~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 176 QLRASRRGLHL--TDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHH
Confidence 86664322111 13567777777777655444443
No 86
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=7.5e-08 Score=110.48 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=15.8
Q ss_pred ccEEEcCCCCccccchHhhcCCCCCEEeecCCC
Q 046086 734 TEVLHLKGNNLERIPESIRHLSKLKSLDISYCE 766 (966)
Q Consensus 734 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~ 766 (966)
|+.+++++|.+..++..+..+..+..|++.+|+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcc
Confidence 444455555444444444444444555554444
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.6e-06 Score=94.17 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=111.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
|...+++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+++.+...- +..--+. ....+.-.-..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHH
Confidence 4456789999999999999987532 245678999999999999999998764210 0000000 00000000000
Q ss_pred HHHHH----HhC-CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-
Q 046086 207 QLLST----LLN-DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK- 274 (966)
Q Consensus 207 ~ll~~----l~~-~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 274 (966)
.+... +.. ........++..+.+... ..++.-++|+|+++.. .....|+..+.....+.++|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 00000 000 000011112222222211 1345568999999765 45677777766555677766666554
Q ss_pred hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 275 HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 275 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
.+.... .....+.++.++.++..+.+.+.+-...... ..+..+.|++.++|.|...
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 333221 2235789999999999988887653322211 1345678899999988533
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.28 E-value=1.6e-05 Score=83.52 Aligned_cols=171 Identities=17% Similarity=0.200 Sum_probs=96.5
Q ss_pred Cccc-cccc-hHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHH
Q 046086 132 KELV-GVEC-PINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLL 209 (966)
Q Consensus 132 ~~~v-Gr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 209 (966)
++|+ |... .+..+.++... ...+.+.|+|++|+|||+|++++++....+-..+.|+... ... ....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~~~------~~~~--- 89 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-KRA------WFVP--- 89 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-HHh------hhhH---
Confidence 3444 6322 33444444332 3346789999999999999999999876554455666521 100 0000
Q ss_pred HHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh---HHHHH-HhcccCCC-CCC-cEEEEEeCch---------
Q 046086 210 STLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL---KQIEF-LIGRIDWL-ASG-SRIIITTRDK--------- 274 (966)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~-l~~~~~~~-~~g-s~IIiTTR~~--------- 274 (966)
+.. +.+.. --+|++||+... .+|+. +...+... ..| .++|+||+..
T Consensus 90 --------------~~~----~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 90 --------------EVL----EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------------HHH----HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 111 11111 137899999553 23322 11111110 133 4799998855
Q ss_pred hhhhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 275 HVLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 275 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
.+...+....+++++++++++-.+.+.+++..... .--.++...+++++.|..-++..+
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 22223344568999999999999998876643221 112356777888887766544443
No 89
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=2.1e-05 Score=86.60 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=108.7
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEEeehhhhccCCHHHHH
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
++++|.+..++++...+..+ .-.+...++|+.|+||||+|+.+++.+.. +.+...|.. . ....-....+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHHH
Confidence 46789999999999998643 23457789999999999999999987532 223223321 0 01111222221
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCC--ChHHHHHHhcccCCCCCCcEEEEEeCchhhh-hc-CC
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVT--HLKQIEFLIGRIDWLASGSRIIITTRDKHVL-SN-CL 281 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~ 281 (966)
++...+.... ...++| ++|+|+++ +.+.+..|+..+....+++.+|++|.+...+ .. ..
T Consensus 80 -~~~~~~~~~p---------------~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 -NIIEEVNKKP---------------YEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred -HHHHHHhcCc---------------ccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 1222111100 012344 55666664 4566788888777777889999888766432 21 12
Q ss_pred cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 282 VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
....+++.+++.++..+.+.+... . . . .+.+..++.+++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~-~-~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-D-I-K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-C-C-C---HHHHHHHHHHcCCCHHHHHH
Confidence 246889999999999888765531 1 1 1 23367889999999865443
No 90
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=2e-08 Score=113.12 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=101.3
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEE
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLH 738 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~ 738 (966)
.|...+.+.|.+..+..++.-++.|+.|+|++|++...- .+..|+.|++|||+.| .+..+|..-..- . .|+.|+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g--c-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVG--C-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhh--h-hheeee
Confidence 688888999999999899999999999999999876553 6788999999999995 556676542221 1 699999
Q ss_pred cCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeec
Q 046086 739 LKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIH 805 (966)
Q Consensus 739 Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~ 805 (966)
|++|.++++- ++.+|.+|+.||+++|-+.+.- . +.-...|..|..|.|.+|.+|+.
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyNll~~hs--------e--L~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYNLLSEHS--------E--LEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHhhhhcch--------h--hhHHHHHHHHHHHhhcCCccccC
Confidence 9999999887 8999999999999999754321 1 11123455666678888888655
No 91
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.26 E-value=2.5e-05 Score=80.87 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=88.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCC--ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE--GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSK 231 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 231 (966)
....+.|+|..|.|||.|.+++++.+.+..+ .++|+. .......+...+.. .....+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~---------~~~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD---------GEIEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT---------TSHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc---------ccchhhhh
Confidence 3456899999999999999999998776543 345554 12333333333332 11233445
Q ss_pred HhcCCcEEEEEecCCChH---HH-HHHhcccCC-CCCCcEEEEEeCch-hhh--------hcCCcceeEeeccCChhhHH
Q 046086 232 RFTRKKVLIVFDDVTHLK---QI-EFLIGRIDW-LASGSRIIITTRDK-HVL--------SNCLVDQIYEVKELLDVDAL 297 (966)
Q Consensus 232 ~L~~k~~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IIiTTR~~-~v~--------~~~~~~~~~~l~~L~~~ea~ 297 (966)
.++.-. +|++||++... .+ +.+...++. ...|-+||+|++.. .-+ ......-++++++++.++..
T Consensus 94 ~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 555333 77889995532 12 222222111 13577899999655 212 12234568999999999999
Q ss_pred HHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 298 KLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 298 ~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
+++.+.+-..... --.+++..+++.+.+..-.|.
T Consensus 173 ~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 173 RILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 9999888433222 123556666666665444333
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=3.1e-05 Score=90.78 Aligned_cols=193 Identities=17% Similarity=0.134 Sum_probs=108.0
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-... ...+ +.......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~pC--------g~C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEPC--------GVCQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCCC--------cccHHHHH
Confidence 445678999999999999998753 2245689999999999999999998653211000 0000 00000000
Q ss_pred HHHH----HhC-CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCchh-
Q 046086 208 LLST----LLN-DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDKH- 275 (966)
Q Consensus 208 ll~~----l~~-~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~- 275 (966)
+... +.. ........+...+.+... ..+++-++|+|+++... ....|+..+.......++|++|.+..
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 0000 000 000001111111111110 12455688999997654 35555555544456677777776553
Q ss_pred hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 276 VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 276 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
+... .+....+.++.++.++..+.+.+.+-.....- ..+....|++.++|.+.-+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHH
Confidence 2211 12224678889999999988887764332211 2345788999999987433
No 93
>PRK09087 hypothetical protein; Validated
Probab=98.25 E-value=2.1e-05 Score=81.75 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
.+.+.|||+.|+|||+|++.+++... ..|+... .+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh---------------------hh
Confidence 45689999999999999999887642 2355410 111111111 01
Q ss_pred CCcEEEEEecCCCh----HHHHHHhcccCCCCCCcEEEEEeCch---------hhhhcCCcceeEeeccCChhhHHHHHh
Q 046086 235 RKKVLIVFDDVTHL----KQIEFLIGRIDWLASGSRIIITTRDK---------HVLSNCLVDQIYEVKELLDVDALKLFS 301 (966)
Q Consensus 235 ~k~~LlVLDdv~~~----~~~~~l~~~~~~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 301 (966)
+ -+|++||++.. +.+-.+..... ..|..||+|++.. .+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 17888999543 22333332222 3577899988742 233334555789999999999999999
Q ss_pred hhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 302 RRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
+.+-.... .--+++...|++++.|..-++..+
T Consensus 164 ~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQL--YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 88743221 112466778888888776655543
No 94
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=2.3e-05 Score=88.64 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=99.6
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
..+.+.|++..++++.+.+.. +-...+-|.++|++|.|||++|++++++....| +....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~----- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG----- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeeh-----
Confidence 345788999999999887642 112345689999999999999999999875432 22110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------H---HHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------Q---IEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~---~~~l~~~~~~~- 261 (966)
..+... ..+. ........+...-...+.+|+|||++... . +..++.....+
T Consensus 199 ---~~l~~~----~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---SELVQK----FIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---HHHhHh----hccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 011110 0000 00111112222223467899999997531 1 22233222222
Q ss_pred -CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCC-ccHHHHHHHHHHHcCCC
Q 046086 262 -ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPN-ASYKELTQEAVKYAKGV 328 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~iv~~~~G~ 328 (966)
..+.+||.||........ ...+..++++..+.++..++|..+..+..... .+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 235677778876543322 12456799999999999999998875433221 22 34455556553
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.1e-05 Score=91.33 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=109.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---------------------CCce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---------------------FEGS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 186 (966)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344578999999999999988643 223557899999999999999999865421 1111
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHH-HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSK-RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
+.+.. ....+...+ +++ ...+.. -..+++-++|+|+++.. ...+.|+..+.....
T Consensus 91 ieida----as~~gvd~i-r~i-----------------i~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 91 IEIDA----ASRTGVEET-KEI-----------------LDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred EEeec----ccccCHHHH-HHH-----------------HHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 11110 011111111 111 111111 12345668999999754 456677766665556
Q ss_pred CcEEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 264 GSRIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 264 gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
.+.+|++|.+. .+... ......+++++++.++..+.+.+.+-.... .-..+....|++.++|.+- |+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67666555444 33322 123468899999999988887765532221 1123456788899998663 44443
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=4.1e-05 Score=86.29 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=111.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc----CCc-----------------e
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH----FEG-----------------S 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~-----------------~ 186 (966)
|.....++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.++..+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3455678999999999999886532 24567899999999999999999876421 110 1
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
.++... ....... .+++....... -..+++-++|+|+++.. .....+...+....+.
T Consensus 89 ~~~~~~----~~~~~~~-~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDAA----SNNGVDD-IREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeecc----ccCCHHH-HHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 111100 0001111 11111111000 01234458889998665 4466666666555566
Q ss_pred cEEEEEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 265 SRIIITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 265 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
+.+|++|.+.. +... ......+++++++.++..+.+...+-.....- -.+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 77777776553 2222 12235788899999999988888764332211 13567888999999886554443
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=9.9e-05 Score=85.22 Aligned_cols=188 Identities=16% Similarity=0.100 Sum_probs=109.7
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCC-------ceEEEEeehhhhccCC
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE-------GSYFAHNVQEAQENGG 200 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~ 200 (966)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~--------- 86 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT--------- 86 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh---------
Confidence 445678999999999998877643 22357889999999999999999997642110 0011100
Q ss_pred HHHHHHHHHHHHhC-----CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEE
Q 046086 201 LAHLRQQLLSTLLN-----DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIII 269 (966)
Q Consensus 201 ~~~l~~~ll~~l~~-----~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIi 269 (966)
-...+...... ........++....+... ..+++-++|+|+++.. ..+..|+..+....+.+.+|+
T Consensus 87 ---~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 87 ---NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred ---HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 00000000000 000001111221111111 2345668999999774 457777766665556666665
Q ss_pred Ee-CchhhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 270 TT-RDKHVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 270 TT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
+| +...+.... .....+++++++.++..+.+.+.+-...... ..+....|++.++|.+-
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 44 444443322 2235789999999999999988874332211 23456778999999774
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=9.4e-06 Score=97.61 Aligned_cols=172 Identities=24% Similarity=0.341 Sum_probs=100.7
Q ss_pred cCCCCccccccchHH---HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPIN---EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...++++|.+..+. .+.+.+.. .....+.++|++|+||||+|+.+++.....|. .+..+ ..+...+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH
Confidence 444567999988874 45566643 34567889999999999999999998765542 22111 0111111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHh--cCCcEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEE--eCchh--h
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRF--TRKKVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIIT--TRDKH--V 276 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiT--TR~~~--v 276 (966)
. +. .....+.+ .+++.+||||||+. ..+.+.|+.... .|..++|+ |++.. +
T Consensus 94 r-~~-----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 94 R-AE-----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HH-----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 1 11 11111111 24567999999964 455666665443 45555553 33331 1
Q ss_pred hhc-CCcceeEeeccCChhhHHHHHhhhhcCC-----CCCCccHHHHHHHHHHHcCCCch
Q 046086 277 LSN-CLVDQIYEVKELLDVDALKLFSRRAFGE-----DDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 277 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
... ......+.+++|+.++..+++.+.+-.. .....-..+....|++++.|..-
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 1123578999999999999988765310 11111124566788888888653
No 99
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.2e-05 Score=90.68 Aligned_cols=192 Identities=14% Similarity=0.064 Sum_probs=109.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCC---ceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE---GSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~l 204 (966)
|....++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...-. ..|..+. .-..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHH
Confidence 4456789999999999999886532 2345789999999999999999987643210 0011100 00000
Q ss_pred HHHHHHHHhCCCC-C---CCChhhhHHHHHH-HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hh
Q 046086 205 RQQLLSTLLNDRN-V---KNSPNIVLNFQSK-RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HV 276 (966)
Q Consensus 205 ~~~ll~~l~~~~~-~---~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v 276 (966)
.......+..-.. . ..+..+..+.+.. ...++.-++|+|+|+.. +.+..|+..+........+|++|.+. .+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000000000000 0 0011111111111 12356668999999764 45777776665444556656555543 33
Q ss_pred hhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 277 LSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 277 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
.... .....|.+.+++.++..+.+.+.+-.... .-..+....|++.++|.+-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 3221 22357999999999998888877643221 1123567889999999883
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.6e-08 Score=98.87 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=121.0
Q ss_pred CceeEEEecCCCCcccc-----cccccceEeecCCCCCc-ccccccccccccceecccCCCCCCCCC---CCCCCccCcE
Q 046086 523 TDVRYFEWHEFPLKTLN-----IRAENLVSLKLPGSNVE-QLWDDVQNLVNIKEIDLHGSKQLSKLP---DLSQARNLER 593 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp-----~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~ 593 (966)
..|++||+++..++.-. ..+.+|+.|.|.++.+. .+-..+.+-.+|+.|+|+.+.-.+... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 77999999988765432 67889999999999887 455668888999999999997665544 1788999999
Q ss_pred EeccCccCCcccccc-ccC-CCcccEEeccCCCCCcccCC---cc-CCCcccEEEecCCCCCCCCcccccCcccEEeecc
Q 046086 594 LKLDGCSSLMETHSS-IQY-LNKLEVLDLRLCESLRSLPD---TI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYE 667 (966)
Q Consensus 594 L~L~~~~~~~~~~~~-l~~-l~~L~~L~L~~n~~l~~lp~---~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~ 667 (966)
|+|+.|......-.. +.+ -++|..|+|+|+...-.... .. .+++|..|+|++|..++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---------------- 328 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---------------- 328 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----------------
Confidence 999999766543211 111 25788999998863211111 01 556777777777654321
Q ss_pred cccccccccccCCCCCCEEeccCCCCcccccc---cccCCCCCcEEEccCCC
Q 046086 668 CGIEDMPLSIECLSKLNSLDIHNCTRLEYIKS---SIFKLKSLKHIEISSCS 716 (966)
Q Consensus 668 n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~---~l~~l~~L~~L~Ls~~~ 716 (966)
.+-..|..++.|++|.++.|.. .+|. .+...|+|.+|++-+|-
T Consensus 329 ----~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 ----DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 2223467788999999999853 3333 35678999999998864
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00015 Score=83.00 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=109.7
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---------------------CCce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---------------------FEGS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 186 (966)
|...+++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+.-. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3456789999999999988886532 23478899999999999999998854211 1112
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
+.++. ....+...+. ++....... -..+++=++|+|+++.. .....|+..+....+.
T Consensus 88 ~eida----as~~~vddIR-~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDA----ASNTSVDDIK-VILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEec----ccCCCHHHHH-HHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 22221 1111222221 111111000 01234558999999654 3466777666665677
Q ss_pred cEEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 265 SRIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 265 s~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
+++|++|.+. .+... ......+++.+++.++..+.+.+.+-.....- ..+....|++.++|.+-
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 7777766443 33322 12346789999999999999888774432211 13456788999998774
No 102
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=6.5e-07 Score=91.30 Aligned_cols=192 Identities=18% Similarity=0.174 Sum_probs=108.5
Q ss_pred cccccceEeecCCCCCcc---cccccccccccceecccCCCCCCCCCCC-CCCccCcEEeccCccCCcc-ccccccCCCc
Q 046086 540 IRAENLVSLKLPGSNVEQ---LWDDVQNLVNIKEIDLHGSKQLSKLPDL-SQARNLERLKLDGCSSLME-THSSIQYLNK 614 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~---l~~~~~~l~~L~~L~Ls~n~~~~~~p~l-~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~ 614 (966)
...+.+++|||.+|.|+. +..-+.+|+.|+.|+|+.|++...+..+ ..+.||+.|-|.|....-. ..+.+..+|+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456778889999998874 3333678999999999999877666554 4667888888887543222 2345566677
Q ss_pred ccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCc
Q 046086 615 LEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRL 694 (966)
Q Consensus 615 L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~ 694 (966)
++.|.++.|+ ++.+++..+.....-| .+.+|++.+| +..+.++-|+..
T Consensus 148 vtelHmS~N~-------------~rq~n~Dd~c~e~~s~-----~v~tlh~~~c--------------~~~~w~~~~~l~ 195 (418)
T KOG2982|consen 148 VTELHMSDNS-------------LRQLNLDDNCIEDWST-----EVLTLHQLPC--------------LEQLWLNKNKLS 195 (418)
T ss_pred hhhhhhccch-------------hhhhccccccccccch-----hhhhhhcCCc--------------HHHHHHHHHhHH
Confidence 7777766653 2222222221111000 1222222222 222222222222
Q ss_pred ccccccccCCCCCcEEEccCCCCCcccc-ccccCCCCCCCccEEEcCCCCccccc--hHhhcCCCCCEEeecCCCCcccc
Q 046086 695 EYIKSSIFKLKSLKHIEISSCSNLKRFP-EISSSCNREGSTEVLHLKGNNLERIP--ESIRHLSKLKSLDISYCEWLHTL 771 (966)
Q Consensus 695 ~~~p~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~l 771 (966)
.. +|++..+-+..|+.-..-. .... ..+.+-.|+|+.|+|.+.. +.+..++.|..|.++++++...+
T Consensus 196 r~-------Fpnv~sv~v~e~PlK~~s~ek~se---~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RI-------FPNVNSVFVCEGPLKTESSEKGSE---PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hh-------cccchheeeecCcccchhhcccCC---CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 11 2344444444443211100 0011 1225667888999888654 36788999999999999988776
Q ss_pred CC
Q 046086 772 PE 773 (966)
Q Consensus 772 p~ 773 (966)
..
T Consensus 266 ~~ 267 (418)
T KOG2982|consen 266 RG 267 (418)
T ss_pred cC
Confidence 54
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=7.4e-05 Score=85.79 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=98.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
...+.|+|..|.|||+|++++++.+.... ..++|+. ...+...+...+.... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 35689999999999999999999776433 2334443 1233344433332210 122334444
Q ss_pred hcCCcEEEEEecCCChH---H-HHHHhcccCC-CCCCcEEEEEeCch-h--------hhhcCCcceeEeeccCChhhHHH
Q 046086 233 FTRKKVLIVFDDVTHLK---Q-IEFLIGRIDW-LASGSRIIITTRDK-H--------VLSNCLVDQIYEVKELLDVDALK 298 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~ 298 (966)
++. .-+||+||+.... . .+.+...++. ...|..||+|+... . +...+...-+.++++++.++..+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 3478889995432 1 2333222211 13455788886643 1 12222344577899999999999
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhh
Q 046086 299 LFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSF 338 (966)
Q Consensus 299 Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~ 338 (966)
++.+++-.......-..+....|++.++|.|-.+.-+...
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9998874322111223567889999999999776655433
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=6e-05 Score=83.38 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=113.7
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc----CCceEEEEeehhhhccCCHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH----FEGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~~ 202 (966)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 4667788999999999999998754 234568999999999999999999976432 1111000 000001
Q ss_pred HHHHHHHHH-------HhC---CCC----CCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCC
Q 046086 203 HLRQQLLST-------LLN---DRN----VKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWL 261 (966)
Q Consensus 203 ~l~~~ll~~-------l~~---~~~----~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~ 261 (966)
...+.+... +.. .+. ..-..++. ..+.+.+ .+++-++|+|+++.. .....|+..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222111 000 000 00112222 1222232 345668999999764 3455565555444
Q ss_pred CCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 262 ASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 262 ~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
..+..+|++|... .+.... .....+.+.+++.++..+++.+...... -..+.+..+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4556655555444 333221 1235899999999999999987432211 11345678999999999755444
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.8e-06 Score=69.46 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=48.0
Q ss_pred cccEEeecccccccccc-cccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCC
Q 046086 659 HIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
+|++|++++|.++.+|. .|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47888888888888875 67888999999999888877767788888888888888874
No 106
>PF14516 AAA_35: AAA-like domain
Probab=98.14 E-value=0.00048 Score=76.23 Aligned_cols=206 Identities=14% Similarity=0.157 Sum_probs=118.7
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh-ccCCHHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ-ENGGLAHLR 205 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~~~~~~l~ 205 (966)
.+.+.+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+...+.=-.+++++.-.... .........
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 355677788999666666666643 2347999999999999999999998865433445665322111 123344333
Q ss_pred ----HHHHHHHhCCCC-------CCCChhhhHHHHHHHh---cCCcEEEEEecCCChHH----HHHHhccc-CCC-----
Q 046086 206 ----QQLLSTLLNDRN-------VKNSPNIVLNFQSKRF---TRKKVLIVFDDVTHLKQ----IEFLIGRI-DWL----- 261 (966)
Q Consensus 206 ----~~ll~~l~~~~~-------~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~----~~~l~~~~-~~~----- 261 (966)
..+..++.-... ...........+.+.+ .+++++|++|+|+..-. .+.+.+.+ .|.
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 344333322211 1112223334444433 36899999999965321 11221111 010
Q ss_pred -C--CCcEEEEEeC--chhhhhc----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 262 -A--SGSRIIITTR--DKHVLSN----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 262 -~--~gs~IIiTTR--~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
. ..-++++... ....... ..+...+++++++.+|...|..++-.. . . ....++|...++|+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHHHH
Confidence 0 1112222221 1111111 133457889999999999999877422 1 1 123889999999999999
Q ss_pred HhHhhhhcC
Q 046086 333 KVLGSFLFG 341 (966)
Q Consensus 333 ~~~g~~L~~ 341 (966)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999888865
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.0002 Score=84.32 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=109.0
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC----CceEEEEeehhhhccCCHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF----EGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~~~~~~~~~ 203 (966)
|...+++||-+..++.|.+++..+ .-...+.++|..|+||||+|+.+++.+...- .+... ...+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccH
Confidence 345678999999889999988753 2345678999999999999999988653210 00000 0000000
Q ss_pred HHHHHHHHH----hC-CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeC
Q 046086 204 LRQQLLSTL----LN-DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTR 272 (966)
Q Consensus 204 l~~~ll~~l----~~-~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR 272 (966)
..+.+.... .. ........++..+.+... ..++.-++|||+|+.. .....|+..+.......++|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 111110000 00 000001111111111110 1234458899999764 446677766665556667776665
Q ss_pred ch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 273 DK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 273 ~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
+. .+... ......++++.++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 43 33222 12346889999999999988887764332221 1345778889999877433
No 108
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00012 Score=85.23 Aligned_cols=195 Identities=16% Similarity=0.099 Sum_probs=106.9
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....+++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. . ...+-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~----~~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G----DCCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C----CCCcccHHHHH
Confidence 445678999999999999988643 2246788999999999999999998763211 000 0 00000000111
Q ss_pred HHHHHhCC-----CCCCCChhhhHHHHHHH-----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-
Q 046086 208 LLSTLLND-----RNVKNSPNIVLNFQSKR-----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK- 274 (966)
Q Consensus 208 ll~~l~~~-----~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 274 (966)
+....... .......++... +.+. ..+++=++|+|+++.. .....|+..+....+...+|++|...
T Consensus 82 i~~~~h~DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 10000000 000001111111 1111 1123336999999763 44566666555444566666555443
Q ss_pred hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 275 HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 275 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
.+... ......+++.+++.++....+...+-.....- ..+.+..+++.++|.+- |+..+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 33222 12345789999999999988887663322111 12457788999999664 44333
No 109
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00015 Score=82.33 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=108.1
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--CCceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--FEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|....+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... +...-|..... ...+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHH
Confidence 4456789999999999999886532 23458899999999999999999876431 10000000000 000000001
Q ss_pred HHHHHHHhC-----CCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCc
Q 046086 206 QQLLSTLLN-----DRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRD 273 (966)
Q Consensus 206 ~~ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~ 273 (966)
+++...... ........++..+ +.+.+ .+.+-++|+|+++.. ..++.+...+....+.+.+|++|.+
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111000000 0000011112221 12222 234558899999754 3566676666655567777666543
Q ss_pred -hhhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 274 -KHVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 274 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
..+.... .....+++++++.++..+.+...+-.... .-..+.+..+++.++|.+--
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 3333221 12347889999999988888776532211 11235678899999998743
No 110
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=5.5e-05 Score=89.20 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=110.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....++||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+...... . ....+.-....+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHHH
Confidence 3456789999999999999986532 23457899999999999999999865432100 0 000000011111
Q ss_pred HHHHHhC-----CCCCCCChhhhHHHHHH----HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-
Q 046086 208 LLSTLLN-----DRNVKNSPNIVLNFQSK----RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH- 275 (966)
Q Consensus 208 ll~~l~~-----~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~- 275 (966)
+...-.. ........++..+.+.. -..+++-++|+|+++.. .....|+..+.......++|++|.+..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1100000 00000111111111111 12356668999999764 456677666655556677766666553
Q ss_pred hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 276 VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 276 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
+... ......|.+++++.++..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRD 216 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3322 1224689999999999999888765322211 1234567899999998853
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=0.00015 Score=73.42 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 45568899999664 34666766666556677888877755 222211 22358999999999999988776 1 1
Q ss_pred CccHHHHHHHHHHHcCCCchh
Q 046086 311 NASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLa 331 (966)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 35588999999998853
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=6.3e-05 Score=84.38 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=105.1
Q ss_pred CccccccchHHHHHHhhhcCCC--------CceEEEEeecCCCchhHHHHHHHHHhhccC--------------------
Q 046086 132 KELVGVECPINEIESLLRTGSA--------GVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-------------------- 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 183 (966)
++++|-+..++.|.+.+..+.. -.+.+.++|++|+|||++|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999999875421 245688999999999999999998653221
Q ss_pred CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCC
Q 046086 184 EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWL 261 (966)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~ 261 (966)
+...++.. ....-....+ +++...... .-..+++-++|+|+++.. .....|+..+...
T Consensus 85 pD~~~i~~---~~~~i~i~~i-R~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDEV-RELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecc---ccccCCHHHH-HHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11111110 0000111111 111111100 001234457788999764 3345566555555
Q ss_pred CCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 262 ASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 262 ~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
.++..+|++|.+. .+.... .....+.+++++.++..+.+.... + . . .+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5677777776665 333221 224688999999999998887542 1 1 1 244778899999999654433
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.06 E-value=9.9e-05 Score=88.12 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44557899999999998877743 334579999999999999999998755
No 114
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=4e-06 Score=67.46 Aligned_cols=56 Identities=30% Similarity=0.397 Sum_probs=26.8
Q ss_pred cceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCc
Q 046086 544 NLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGC 599 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~ 599 (966)
+|++|++++|+++.+|. .+.++++|++|++++|.+....| .|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555543 24455555555555554332222 1444444444444444
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00023 Score=80.45 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=105.6
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--------CCceEEEEeehhhhccC
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--------FEGSYFAHNVQEAQENG 199 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~ 199 (966)
|...++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++- ... ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccCC
Confidence 445678899999999999998653 234578899999999999999998876431 2211111 100 0111
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hh
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HV 276 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v 276 (966)
+...+ .++..+.... -..+++-++|+|+++.. ..+..+...+........+|++|..+ .+
T Consensus 89 ~~~~i-~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CHHHH-HHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11111 1111111000 01234457999998654 33566655444334455666655332 33
Q ss_pred hhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 277 LSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 277 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
... ......+++++++.++....+...+......- ..+.+..+++.++|.+-
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 222 12234789999999999888887764333211 13567888888998765
No 116
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00016 Score=84.04 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=107.2
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---------------------CCce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---------------------FEGS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 186 (966)
|...+++||-+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 445678999999999999999653 223457899999999999999999865321 1111
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
..++. ....+...+. +++..+.-. -..++.-++|+|+|+.. .....|+..+....+.
T Consensus 91 ~eida----as~~~v~~iR-~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDA----ASRTKVEDTR-ELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEcc----cccCCHHHHH-HHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 12210 0112222221 121111100 01244557889999764 4566666666655667
Q ss_pred cEEEEEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 265 SRIIITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 265 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
+++|++|.+.. +... ......+++++++.++..+.+.+.+-...... ..+....|++.++|-+.-
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 87777665542 2211 11234688999999988777666553222211 124467788899997743
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.01 E-value=5.5e-05 Score=80.96 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred ccccccchHHHHHHhhhc-------------CCCCceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEEeehhhhc
Q 046086 133 ELVGVECPINEIESLLRT-------------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAHNVQEAQE 197 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 197 (966)
.++|.+...++|.+.... ..+....+.++|++|.||||+|+.+++.+...- ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 467777777666543321 123455688999999999999999998753211 1112222 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCC----------hHHHHHHhcccCCCCCCcEE
Q 046086 198 NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTH----------LKQIEFLIGRIDWLASGSRI 267 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~----------~~~~~~l~~~~~~~~~gs~I 267 (966)
.. +.....+. ........+.+. . .-+|++|+++. .++++.+............+
T Consensus 83 ----~~----l~~~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 ----AD----LVGEYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ----HH----hhhhhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 01 11111000 011112222222 1 23888999964 23456666655443334455
Q ss_pred EEEeCchhhhh------c--CCcceeEeeccCChhhHHHHHhhhhc
Q 046086 268 IITTRDKHVLS------N--CLVDQIYEVKELLDVDALKLFSRRAF 305 (966)
Q Consensus 268 IiTTR~~~v~~------~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 305 (966)
|+++.....-. . ......+++++++.+|-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 56554332200 0 11234688999999999999987763
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00011 Score=86.17 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=106.1
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC---------------------Cce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF---------------------EGS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 186 (966)
|....++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3445789999999999999986532 234578999999999999999998763211 011
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASG 264 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~g 264 (966)
+++.. ....+...+ ++++..... .-..+++-++|+|+++... ....|+..+......
T Consensus 91 ~ei~~----~~~~~vd~i-r~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDA----ASNTQVDAM-RELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeec----cccCCHHHH-HHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 11110 001111111 111111100 0013456689999998653 366666666554566
Q ss_pred cEEEEEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 265 SRIIITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 265 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
+.+|++|.+.. +... ......++++.++.++..+.+.+.+-..... ...+....|++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 77776665542 2211 1123578899999999988887765322211 123456788899999774
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00017 Score=84.40 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=110.7
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC--C-------------------ce
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--E-------------------GS 186 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~~ 186 (966)
|....+++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+.... . ..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344567899998888888888643 2246788999999999999999998764211 0 01
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHH-HHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 187 YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQS-KRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
.++.. ....++..+. ++.. .+. .-..+++-++|+|+++.. +....|+..+.....
T Consensus 91 ~eId~----a~~~~Id~iR-~L~~-----------------~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 91 VEIDG----ASNRGIDDAK-RLKE-----------------AIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPA 148 (624)
T ss_pred EEEec----ccccCHHHHH-HHHH-----------------HHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCC
Confidence 11110 0001111111 1111 110 012345668999999765 446666666554445
Q ss_pred CcEEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHhHhhh
Q 046086 264 GSRIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP-LALKVLGSF 338 (966)
Q Consensus 264 gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~~g~~ 338 (966)
...+|++|.+. .+... ......+++++++.++..+.+...+......- ..+.+..|++.++|.+ .|+..+...
T Consensus 149 ~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666666554 33322 12235789999999999988887664332211 1355788889999865 566666543
No 120
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00033 Score=82.32 Aligned_cols=196 Identities=16% Similarity=0.095 Sum_probs=108.9
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|...+++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+....... .-. .+.-...+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p--------Cg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATP--------CGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCc--------ccccHHHHH
Confidence 345678999999999999998653 2234578999999999999999998764211000 000 000000000
Q ss_pred HHHHHhC-------CCCCCCChhhhH---HHHHHH-hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 208 LLSTLLN-------DRNVKNSPNIVL---NFQSKR-FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 208 ll~~l~~-------~~~~~~~~~~~~---~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
+...... ........++.. +.+... ..+++-++|+|+++.. .....|+..+........+|++|.+.
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 0000000 000000111111 111110 1234558899999654 45666776666556677766665443
Q ss_pred -hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 275 -HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 275 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
.+... ......+++..++.++..+.+.+.+-.....- ..+....|++.++|.+- |+..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 12246899999999999888877664322211 12456778889999774 44443
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00061 Score=78.87 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=110.0
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cCCc--eEEEE--------------
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEG--SYFAH-------------- 190 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~-------------- 190 (966)
|...+++||-+...+.|...+..+ .-.+...++|+.|.||||+|+.+++.+-. .... .|..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 345678999999999999998654 23446689999999999999999987531 1100 00000
Q ss_pred -eehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 191 -NVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 191 -~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
... .....+...+ .+.+... ..+++-++|+|+++.. +....|+..+....+
T Consensus 89 ~eld-aas~~gId~I---------------------Relie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMD-AASNRGIDDI---------------------RELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEec-cccccCHHHH---------------------HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 000 0001112222 1111110 1134558899999764 446667766665567
Q ss_pred CcEEEEEeCchh-hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 264 GSRIIITTRDKH-VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 264 gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
.+++|++|.+.. +... ......+++.+++.++..+.+.+.+-.....- ..+.+..|++.++|.+--+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Confidence 788787777652 2111 12245889999999999988877664332211 23567889999999884433
No 122
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.95 E-value=0.0001 Score=84.74 Aligned_cols=162 Identities=17% Similarity=0.294 Sum_probs=93.8
Q ss_pred CCCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccC-----CceEEEEee
Q 046086 129 NDNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-----EGSYFAHNV 192 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~ 192 (966)
.....+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3456788999999999887642 112345689999999999999999999876542 2344443 2
Q ss_pred hhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH-hcCCcEEEEEecCCChH---------H-----HHHHhcc
Q 046086 193 QEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR-FTRKKVLIVFDDVTHLK---------Q-----IEFLIGR 257 (966)
Q Consensus 193 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~---------~-----~~~l~~~ 257 (966)
... .+..+. .+. ............++. ..+++++|+||+++..- + +..++..
T Consensus 258 ~~~-------eLl~ky----vGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGP-------ELLNKY----VGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cch-------hhcccc----cch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 110 000000 000 000001111222221 23578999999996431 1 2234433
Q ss_pred cCCCC--CCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhh
Q 046086 258 IDWLA--SGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 258 ~~~~~--~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
++... .+..||.||.....+.. ...+..++++..+.++..++|..+.
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 33222 34455666665543321 1345679999999999999998886
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=7.4e-05 Score=82.70 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=87.6
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
.|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.....+ ..+... . .....+..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~~----~-~~~~~i~~ 86 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNGS----D-CRIDFVRN 86 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEeccC----c-ccHHHHHH
Confidence 3556688999999999999998643 2345777799999999999999998764322 223211 1 11222211
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh---HHHHHHhcccCCCCCCcEEEEEeCchhhhhc--CC
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL---KQIEFLIGRIDWLASGSRIIITTRDKHVLSN--CL 281 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~--~~ 281 (966)
.+. ..... ....+.+-+||+||++.. +..+.+...+.....+.++|+||........ ..
T Consensus 87 ~l~-~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 87 RLT-RFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHH-HHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 111 11000 001133457889999755 2233333334444577889999876532211 01
Q ss_pred cceeEeeccCChhhHHHHHhh
Q 046086 282 VDQIYEVKELLDVDALKLFSR 302 (966)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~ 302 (966)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 123567777777777766544
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00084 Score=77.73 Aligned_cols=196 Identities=14% Similarity=0.080 Sum_probs=107.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---C-CceEEEEeehhhhccCCHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---F-EGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F-~~~~~~~~~~~~~~~~~~~~ 203 (966)
|.....++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+... . +.+-...+........ ...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~-~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS-FPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC-CCc
Confidence 3445678999999999999996532 24456789999999999999999876421 0 0000000000000000 000
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-h
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-H 275 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~ 275 (966)
+. .+ ........+. ...+.+.. .+++-++|+|+++.. .....|+..+....+...+|++|.+. .
T Consensus 90 ~~-----ei--daas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 90 LI-----EI--DAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred EE-----EE--eCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 00 00 0000000111 11122211 345568999999754 34566666555545566666655433 3
Q ss_pred hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 276 VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 276 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
+... ......+++.+++.++..+.+...+-..... -..+.+..+++.++|.+..+..+
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3221 1223578899999999988888766332211 12345778889999977544333
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00073 Score=80.03 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=106.9
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--CCceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--FEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|...+++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .+...|...+. ...+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHH
Confidence 345678999999999999988643 223458899999999999999999876321 11001111000 000000001
Q ss_pred HHHHHHHhC-----CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCc-
Q 046086 206 QQLLSTLLN-----DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRD- 273 (966)
Q Consensus 206 ~~ll~~l~~-----~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~- 273 (966)
+.+...... ........++....+... ..+.+-++|+|+++.. ...+.|+..+....+.+.+|++|.+
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111000000 000011122222221111 1234447899999765 3466666666554556666655543
Q ss_pred hhhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 274 KHVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 274 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
..+... ......+++.+++.++....+.+.+-..... -..+.+..+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 333322 2334689999999999888887655322211 113457888999999664
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00048 Score=82.20 Aligned_cols=196 Identities=15% Similarity=0.110 Sum_probs=110.6
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|...+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-+ ...+.....+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHH
Confidence 3445789999999999998886532 23557899999999999999999876421100000 00000111111
Q ss_pred HHHHHhCC-----CCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-
Q 046086 208 LLSTLLND-----RNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK- 274 (966)
Q Consensus 208 ll~~l~~~-----~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 274 (966)
+......+ .......+...+ +.+.+ .+++-++|+|+++.. +..+.|+..+....+.+.+|++|.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 11100000 000011111111 11111 234568999999654 45666766655545667777666543
Q ss_pred hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 275 HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 275 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
.+... ......++++.++.++..+.+...+......- ..+.+..+++.++|.+..+...
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 23221 12235778999999998888887764332211 1355788999999988654443
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.90 E-value=0.00025 Score=79.79 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=101.8
Q ss_pred cCCCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 128 ENDNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
.....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~s-- 213 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVGS-- 213 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH--
Confidence 33456789999999999887641 112356799999999999999999999765443 211110
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCC
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDW 260 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 260 (966)
.+.... .+. ........+.......+.+|++|+++... .+..++..++.
T Consensus 214 ------~l~~k~----~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 ------EFVQKY----LGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------HHHHHh----cch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 111111 000 01112222333335678899999986421 12233333332
Q ss_pred C--CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 261 L--ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 261 ~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
+ ..+..||+||.....+.. ...+..++++..+.++..++|..+.-+... ...+ ..++++.+.|.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 2 245678888876644322 134567899999999988888876533221 1222 345556666643
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.90 E-value=0.00013 Score=89.55 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=94.3
Q ss_pred HHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-----C-C
Q 046086 111 LIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----F-E 184 (966)
Q Consensus 111 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 184 (966)
.+++...++..+.. +...+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++++... + .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 44444444443332 334567999999999999988643 23347799999999999999999987432 1 2
Q ss_pred ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh-cCCcEEEEEecCCCh-----------HHHH
Q 046086 185 GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTHL-----------KQIE 252 (966)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~ 252 (966)
..+|..+... + .. ........+.....+.+.+ ..++.+|++|+++.. +..+
T Consensus 239 ~~~~~~~~~~---------l----~a----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 239 AKIYSLDMGS---------L----LA----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CeEEEecHHH---------H----hh----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 3344322111 1 00 0000111122222222222 346789999998532 1223
Q ss_pred HHhcccCCCCCC-cEEEEEeCchhhhh------c-CCcceeEeeccCChhhHHHHHhhhh
Q 046086 253 FLIGRIDWLASG-SRIIITTRDKHVLS------N-CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 253 ~l~~~~~~~~~g-s~IIiTTR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.+.+.+. .| -++|-+|...+... . ...-..++++.++.++..+++....
T Consensus 302 ~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3334332 33 34555554422111 0 0112478999999999999998654
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00054 Score=80.98 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=110.7
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCC----ceEEEEeehhhhccCCHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE----GSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~~~~~~~~~ 203 (966)
|....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... +..+-. .+.-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~--------cg~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL--------CGVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc--------CcccH
Confidence 4456789999999999999987542 2446889999999999999999997643221 000000 00000
Q ss_pred HHHHHHHHHhCC-----CCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEe-
Q 046086 204 LRQQLLSTLLND-----RNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITT- 271 (966)
Q Consensus 204 l~~~ll~~l~~~-----~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT- 271 (966)
-.+.+......+ .......++..+.+... ..+++=++|+|+++.. .....|+..+....+++.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 001111100000 00011111211111110 1234447899999665 34666666665555677776655
Q ss_pred CchhhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 272 RDKHVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 272 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
....+.... .....++++.++.++..+.+.+.+-...... ..+....|++.++|.+.-+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 333333221 2335789999999999999888764332211 12557888999999885443
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00025 Score=81.36 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=91.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCC--ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFE--GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
..-+.|+|.+|+|||+||+++++.+....+ .+.|+. . ..+...+...+... . ...+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~-----~----~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG-----K----LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc-----c----HHHHHHH
Confidence 445999999999999999999998776543 345554 1 12333333333211 1 1223333
Q ss_pred hcCCcEEEEEecCCCh---HHH-HHHhcccCC-CCCCcEEEEEeC-chhhh--------hcCCcceeEeeccCChhhHHH
Q 046086 233 FTRKKVLIVFDDVTHL---KQI-EFLIGRIDW-LASGSRIIITTR-DKHVL--------SNCLVDQIYEVKELLDVDALK 298 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IIiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~ 298 (966)
.+.+.-+|++||++.. ... +.+...+.. ...|..||+||. .+.-+ ..+......++++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 3334558999999643 111 222211110 123557888874 33221 122334577899999999999
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 299 LFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 299 Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
++.+.+-.....- -.++...|++++.|.--.|.-
T Consensus 271 IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 271 IARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHhccccCHHHHHH
Confidence 9988874322211 235677888888876544433
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.90 E-value=6.5e-05 Score=85.06 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=93.0
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...++.|.+..++++.+.+.. +-...+-|.++|++|.|||++|++++++....|- .+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s------ 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVGS------ 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc------
Confidence 345678999999999887742 1123456889999999999999999998765541 11100
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
.+.... .+. ........+.......+.+|+||+++... .+-.++..++.+
T Consensus 252 ----eL~~k~----~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ----ELIQKY----LGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ----hhhhhh----cch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 011110 000 00111222223334567889999874321 122233222222
Q ss_pred -CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcC
Q 046086 262 -ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFG 306 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 306 (966)
..+.+||+||.....+.. ...+..++++..+.++..++|..+..+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 245678888886644432 134568899999999999999987643
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=0.00013 Score=90.20 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------C
Q 046086 111 LIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------E 184 (966)
Q Consensus 111 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 184 (966)
.+++...++..+.. +...+.+|||+.++.++.+.|... ...-+.++|.+|+||||+|+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 44444444443332 344578999999999999988653 233467999999999999999999875432 1
Q ss_pred ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhh-hHHHHHHHh-cCCcEEEEEecCCChH-------HHH---
Q 046086 185 GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNI-VLNFQSKRF-TRKKVLIVFDDVTHLK-------QIE--- 252 (966)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~~l~~~L-~~k~~LlVLDdv~~~~-------~~~--- 252 (966)
..+|..+........ ......+. ....+.+.- .+++++|++|++.... +.+
T Consensus 244 ~~i~~l~l~~l~ag~-----------------~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 244 VRLLSLDLGLLQAGA-----------------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred CeEEEeehhhhhccc-----------------ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH
Confidence 223322221110000 00011111 111122211 2468999999984431 111
Q ss_pred HHhcccCCCCCC-cEEEEEeCchhhhhcC-------CcceeEeeccCChhhHHHHHhhhhcC--CCCCCccHHHHHHHHH
Q 046086 253 FLIGRIDWLASG-SRIIITTRDKHVLSNC-------LVDQIYEVKELLDVDALKLFSRRAFG--EDDPNASYKELTQEAV 322 (966)
Q Consensus 253 ~l~~~~~~~~~g-s~IIiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~iv 322 (966)
.|.+.+ ..| -++|-||...+..... ..-..+.|++++.+++.+++....-. ....-.-..+....++
T Consensus 307 ~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 307 LLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV 383 (852)
T ss_pred HhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH
Confidence 233333 234 4566666653221110 12257899999999999997544311 1111111234456666
Q ss_pred HHcCCCc
Q 046086 323 KYAKGVP 329 (966)
Q Consensus 323 ~~~~G~P 329 (966)
+.+.+..
T Consensus 384 ~ls~ryi 390 (852)
T TIGR03345 384 ELSHRYI 390 (852)
T ss_pred HHccccc
Confidence 6666543
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00037 Score=85.20 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=106.6
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC--Cc-eEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EG-SYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~-~~~~~~~~~~~~~~~~~~l 204 (966)
|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.-.. .. -|=.+ .-
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HH
Confidence 3445789999999999999987532 235678999999999999999998764211 00 00000 00
Q ss_pred HHHHHHH------Hh-CCCCCCCChhhhHHHHHH-----HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEE
Q 046086 205 RQQLLST------LL-NDRNVKNSPNIVLNFQSK-----RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIIT 270 (966)
Q Consensus 205 ~~~ll~~------l~-~~~~~~~~~~~~~~~l~~-----~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiT 270 (966)
.+.+... +. .........++..+ +++ -..+++=++|||+++.. .....|+..+......+.+|++
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 0000000 00 00000001111111 111 12344457889999765 4466666666655667777766
Q ss_pred eCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 271 TRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 271 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
|.+. .+... ......|++..++.++..+++.+.+-..... -..+....|++.++|.+.
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6443 34332 2234689999999999888887755222211 122446788999999874
No 134
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.89 E-value=0.00023 Score=82.61 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=92.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCc--eEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG--SYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
...+.|+|.+|+|||+||+++++++..++.. +.|+. . ..+..++...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~---------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRNN---------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHcC---------cHHHHHHH
Confidence 4568999999999999999999998776533 34443 1 12222333332211 11233334
Q ss_pred hcCCcEEEEEecCCChH----HHHHHhcccCC-CCCCcEEEEEeCchh---------hhhcCCcceeEeeccCChhhHHH
Q 046086 233 FTRKKVLIVFDDVTHLK----QIEFLIGRIDW-LASGSRIIITTRDKH---------VLSNCLVDQIYEVKELLDVDALK 298 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 298 (966)
++ +.-+|||||++... ..+.+...+.. ...|..||+||.... +...+.....+++++++.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 44 34488999995421 12222221111 123456888776541 12223344578999999999999
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 299 LFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 299 Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
++...+-..... --.++...|++.+.|..-.|.
T Consensus 288 il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 288 ILKKKAEEEGID--LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHHH
Confidence 999887432211 123567888888888765443
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.87 E-value=0.00064 Score=77.84 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=90.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCC--ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFE--GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
...+.|+|..|+|||+||+++++.+..+.. .++|+. . ..+..++...+... . ...+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~-----~----~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN-----K----MEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC-----C----HHHHHHH
Confidence 356899999999999999999998876543 344543 1 12222333333221 1 2223333
Q ss_pred hcCCcEEEEEecCCChH---H-HHHHhcccCCC-CCCcEEEEEeCch-hh--------hhcCCcceeEeeccCChhhHHH
Q 046086 233 FTRKKVLIVFDDVTHLK---Q-IEFLIGRIDWL-ASGSRIIITTRDK-HV--------LSNCLVDQIYEVKELLDVDALK 298 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~---~-~~~l~~~~~~~-~~gs~IIiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~ 298 (966)
+++ .-+|||||++... . .+.+...+... ..|..+|+|+... .. ...+.....+++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 333 2378899996431 1 12222222111 2455678877642 21 1222333568899999999999
Q ss_pred HHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 046086 299 LFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 299 Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
++...+-.....- -.++...|++.+.|..-.|.
T Consensus 276 il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 9988874332211 24667778888887765443
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=0.00012 Score=75.48 Aligned_cols=132 Identities=13% Similarity=0.054 Sum_probs=77.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
+.+.|||++|+|||+|++.+++.... .++... .. .+ +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~---~~-------~~------------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI---FF-------NE------------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh---hh-------ch------------------------hHHh-
Confidence 56899999999999999998775421 222200 00 00 0011
Q ss_pred CcEEEEEecCCChHH--HHHHhcccCCCCCCcEEEEEeCchhh-------hhcCCcceeEeeccCChhhHHHHHhhhhcC
Q 046086 236 KKVLIVFDDVTHLKQ--IEFLIGRIDWLASGSRIIITTRDKHV-------LSNCLVDQIYEVKELLDVDALKLFSRRAFG 306 (966)
Q Consensus 236 k~~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 306 (966)
..-++++||++...+ +-.+...+. ..|..||+|++...- ...+....++++++++.++-.+++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224788899975432 222222111 356789999885522 222233457999999999988888777642
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchh
Q 046086 307 EDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 307 ~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
.... --+++.+-|++++.|.--.
T Consensus 163 ~~l~--l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 163 SSVT--ISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred cCCC--CCHHHHHHHHHHccCCHHH
Confidence 2111 1135667777777665433
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00065 Score=80.82 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=107.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|....+++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-.+. -...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~-----------~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ-----------ECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh-----------HHHH
Confidence 445678999999999999998753 2345678999999999999999998653210000000000 0000
Q ss_pred HHHH---Hh-CCCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeC-chh
Q 046086 208 LLST---LL-NDRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTR-DKH 275 (966)
Q Consensus 208 ll~~---l~-~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR-~~~ 275 (966)
.... +. .........++ ...+.+.. .+++-++|+|+++.. ..+..|+..+....+...+|++|. ...
T Consensus 82 ~~~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred hhcCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0000 00 00000001111 11111111 245568899999654 456677766655455666555554 333
Q ss_pred hhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHh
Q 046086 276 VLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKV 334 (966)
Q Consensus 276 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~ 334 (966)
+... ......+++.+++.++..+.+...+-...... ..+.+..+++.++|-+- |+..
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 4322 22345899999999999888877653222111 12457788999998764 4443
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.87 E-value=0.00019 Score=77.46 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=82.3
Q ss_pred ccccccchHHHHHHhhhc----------C--C-CCceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEEeehhhhc
Q 046086 133 ELVGVECPINEIESLLRT----------G--S-AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAHNVQEAQE 197 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~----------~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 197 (966)
.++|.+...++|.++... + . ....-+.++|++|.||||+|+.++..+...- ....|+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 357777666666553220 1 0 1122588999999999999999988664321 1112332110
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-----------HHHHHHhcccCCCCCCcE
Q 046086 198 NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-----------KQIEFLIGRIDWLASGSR 266 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~ 266 (966)
.. +...+.+.. .......+.+. ..-+|+||+++.. +.++.|...+.....+.+
T Consensus 99 ----~~----l~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 ----DD----LVGQYIGHT-----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ----HH----HhHhhcccc-----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 11 122221111 11112222222 2358889999632 234555555544445567
Q ss_pred EEEEeCchhhhhcC--------CcceeEeeccCChhhHHHHHhhhh
Q 046086 267 IIITTRDKHVLSNC--------LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 267 IIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
||+++......... .....+++++++.+|-.+++...+
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 77776543221110 123578999999999999988776
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.0015 Score=76.95 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=110.0
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--CC--ceEEEEeehhhhccCCHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--FE--GSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~--~~~~~~~~~~~~~~~~~~~ 203 (966)
|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... .. .+......+.......+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 445678999999999999999753 234568899999999999999999976421 00 000000000000000000
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHH----HhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hh
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSK----RFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HV 276 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v 276 (966)
+. .+ ........++..+.... -..+++-++|+|+++.. ..+..|+..+....+...+|++|.+. .+
T Consensus 90 v~-----~i--dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 90 VI-----EI--DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred eE-----Ee--cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 00 00 00000111111111111 11345558889999654 44677777666555667777666543 33
Q ss_pred hhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 277 LSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 277 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
... ......+++.+++.++..+.+.+.+......- ..+.+..|++.++|.+-.+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 222 12235689999999999888887764332221 2355778889999987543
No 140
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.84 E-value=3.5e-05 Score=84.07 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=59.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCCh------hhhHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSP------NIVLNF 228 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~~~~~ 228 (966)
...+|+|++|+||||||+++|+.+.. +|+.++|+..+++. .....++++++...+.......... ....+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999997754 79999999877652 2356677777753322111111100 111111
Q ss_pred HHH-HhcCCcEEEEEecCCChH
Q 046086 229 QSK-RFTRKKVLIVFDDVTHLK 249 (966)
Q Consensus 229 l~~-~L~~k~~LlVLDdv~~~~ 249 (966)
-+. +..+++++|++|++....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHH
Confidence 111 136799999999996544
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=9.1e-07 Score=100.22 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=96.9
Q ss_pred chhhcCCCCCceEEEecCCCccc------------------------------cccCCCCC-CceeEEEecCCCCcccc-
Q 046086 492 RSTFSKMPKLRFLKFYGKNKCML------------------------------SHFKGVPF-TDVRYFEWHEFPLKTLN- 539 (966)
Q Consensus 492 ~~~f~~l~~L~~L~l~~n~~~~l------------------------------~~l~~~~~-~~L~~L~l~~~~l~~lp- 539 (966)
+-.+..+..||.|.+.+++.... ..+...+. ..|..-+++.|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 34456688999999988732211 11111222 55556666666666555
Q ss_pred --cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCC-CccCcEEeccCccCCccccccccCCCccc
Q 046086 540 --IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQ-ARNLERLKLDGCSSLMETHSSIQYLNKLE 616 (966)
Q Consensus 540 --~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~-l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 616 (966)
.-++.|+.|||++|++...- .+..|++|++|||++|. +..+|.++. -..|+.|.|++|.... + ..+.+|++|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHh-h-hhHHhhhhhh
Confidence 44567888888888887764 67788888888888886 455665432 1238888888765432 2 3677888888
Q ss_pred EEeccCCCCCc--ccCCccCCCcccEEEecCCCC
Q 046086 617 VLDLRLCESLR--SLPDTICSESLFELRLWGCLN 648 (966)
Q Consensus 617 ~L~L~~n~~l~--~lp~~~~l~~L~~L~L~~~~~ 648 (966)
.||+++|-+.+ .+-....+.+|..|.|.||+.
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888775433 122223566777888888753
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00053 Score=78.88 Aligned_cols=180 Identities=15% Similarity=0.160 Sum_probs=105.4
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC---C----ceE-------------
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF---E----GSY------------- 187 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~----~~~------------- 187 (966)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- + +.|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 3456789999999999999986532 235678999999999999999998763210 0 000
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHH-HHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 188 FAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQS-KRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
|+..- . ....+...+. ++. +.+. ....+++-++|+|+++.. +..+.|...+....++
T Consensus 92 ~~~i~-g-~~~~gid~ir-~i~-----------------~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 VLEID-G-ASHRGIEDIR-QIN-----------------ETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred eEEee-c-cccCCHHHHH-HHH-----------------HHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 11000 0 0001111111 111 0000 001245568899998654 3455666555554556
Q ss_pred cEEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 265 SRIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 265 s~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
..+|++|... .+... ......+++++++.++..+.+...+-..... -..+.+..++++++|.+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6777666443 33222 1223578999999999988887765332211 123457889999999764
No 143
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00036 Score=79.88 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=86.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
.-+.|+|+.|+|||+||+++++.+......+.|+.. ..+...+...+... ....++..++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~---------~~~~f~~~~~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG---------EMQRFRQFYRN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc---------hHHHHHHHccc
Confidence 568899999999999999999988655445566541 12233333333211 11233444433
Q ss_pred CcEEEEEecCCChH----HHHHHhcccCC-CCCCcEEEEEeCch-h--------hhhcCCcceeEeeccCChhhHHHHHh
Q 046086 236 KKVLIVFDDVTHLK----QIEFLIGRIDW-LASGSRIIITTRDK-H--------VLSNCLVDQIYEVKELLDVDALKLFS 301 (966)
Q Consensus 236 k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 301 (966)
.-+|++||+.... ..+.+...++. ...|..||+||... . +...+.....+++++++.++..+++.
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3478889985431 12222222110 12456788888542 1 22223344688899999999999998
Q ss_pred hhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 302 RRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
+++-..... --.++...|++.+.|.-
T Consensus 282 ~k~~~~~~~--l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSIR--IEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCCH
Confidence 877432211 11344555666665543
No 144
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00074 Score=69.48 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=133.3
Q ss_pred cCCCCccccccchHHHHHHhhhcC---CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTG---SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|....+|||.++..++|.=.+... ....--|.++|++|.||||||.-+++++...+.. .......+..++.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----tsGp~leK~gDla-- 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----TSGPALEKPGDLA-- 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----cccccccChhhHH--
Confidence 455678999999988887766531 2334568999999999999999999988654421 1000001111111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-HHHHHh-cccCC--------CCCCcEEE------
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-QIEFLI-GRIDW--------LASGSRII------ 268 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-~~~~l~-~~~~~--------~~~gs~II------ 268 (966)
.++.. |...- ++.+|.+.... ..++++ +.... .++++|.|
T Consensus 96 --aiLt~---------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 96 --AILTN---------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --HHHhc---------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 11111 22222 44557664332 122222 11111 13444433
Q ss_pred -----EEeCchhhhhcCC--cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcC
Q 046086 269 -----ITTRDKHVLSNCL--VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFG 341 (966)
Q Consensus 269 -----iTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~ 341 (966)
-|||.-.+..... ..-+.+++..+.+|-.+...+.|..-... -..+-+.+|+++..|-|--..-+-...++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 5888765443321 23467788889999999998887322211 12345889999999999433222222211
Q ss_pred CCHHHHHHHHHH--HhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccCCC--CHHHHHHHHhHcCCCh-hcchhhhhc
Q 046086 342 RRKEEWKSAMKK--MEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLVGE--DRDQVMRFLNSCGFFA-EVGLSVRVD 416 (966)
Q Consensus 342 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~-~~~l~~L~~ 416 (966)
+..+... +...........|.+-=.+|+...++.+.-+.-.+.|- ..+.+...+..+.... +..=-.|++
T Consensus 230 -----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 230 -----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred -----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 1111000 00000012233444445567777777776655444333 4555555443221111 112224666
Q ss_pred CcceeEe
Q 046086 417 KSLITID 423 (966)
Q Consensus 417 ~sLi~~~ 423 (966)
.++|+..
T Consensus 305 ~gfi~RT 311 (332)
T COG2255 305 QGFIQRT 311 (332)
T ss_pred hchhhhC
Confidence 6666654
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0017 Score=77.29 Aligned_cols=196 Identities=15% Similarity=0.091 Sum_probs=108.4
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
|.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.... +.... ...+.-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHH
Confidence 3445679999999999999987542 235678999999999999999999764321 10000 0000011111
Q ss_pred HHHHHHhC-----CCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-
Q 046086 207 QLLSTLLN-----DRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK- 274 (966)
Q Consensus 207 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 274 (966)
.+...... ........+...+.+... ..+++-++|+|+++.. +....|+..+........+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 11110000 000001111111111111 1234558899999764 45666766665444556666555544
Q ss_pred hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 275 HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 275 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.+... ......+++..++.++..+.+.+.+-.....- ..+.+..+++.++|.+..+..
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 33322 12335778889999888887776653322111 124578889999998754443
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=97.77 E-value=0.00089 Score=72.25 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=73.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc-C-CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH-F-EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..+.++|++|.||||+|+.+++.+... + ...-|+... ... +.....+.. .......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--------~~~----l~~~~~g~~-----~~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--------RDD----LVGQYIGHT-----APKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--------HHH----HHHHHhccc-----hHHHHHHHHHc-
Confidence 347899999999999999999865421 1 111133211 011 222221111 01112222222
Q ss_pred cCCcEEEEEecCCCh-----------HHHHHHhcccCCCCCCcEEEEEeCchhhhhc--------CCcceeEeeccCChh
Q 046086 234 TRKKVLIVFDDVTHL-----------KQIEFLIGRIDWLASGSRIIITTRDKHVLSN--------CLVDQIYEVKELLDV 294 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ 294 (966)
..-+|++|+++.. +..+.|...+.....+.+||+++........ -.....+++++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2248899999642 3455555555444455677777754322110 123457899999999
Q ss_pred hHHHHHhhhhcC
Q 046086 295 DALKLFSRRAFG 306 (966)
Q Consensus 295 ea~~Lf~~~a~~ 306 (966)
|..+++...+-.
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999998887743
No 147
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.76 E-value=7.5e-06 Score=73.81 Aligned_cols=56 Identities=36% Similarity=0.604 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCcc
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHV 62 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~v 62 (966)
|+.+...+.+||++|++.|+++|++|..|.||..|+..+.+ .+..|+||. +++.++
T Consensus 36 g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 36 GEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp TS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSESEEEEE--CSGGGS
T ss_pred CCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCCEEEEEE--ECCcCC
Confidence 67788899999999999999999999999999999888843 455899997 555544
No 148
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.75 E-value=3.3e-05 Score=80.98 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=59.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCC------hhhhHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNS------PNIVLN 227 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~------~~~~~~ 227 (966)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+++ ...+..++++.+...+.-....... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999997654 6898999876543 2346777777773332221111111 111112
Q ss_pred HHHH-HhcCCcEEEEEecCCChH
Q 046086 228 FQSK-RFTRKKVLIVFDDVTHLK 249 (966)
Q Consensus 228 ~l~~-~L~~k~~LlVLDdv~~~~ 249 (966)
.... +-.++++++++|++....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 2222 135799999999996543
No 149
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0029 Score=75.50 Aligned_cols=177 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-----------------------CCc
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----------------------FEG 185 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~~ 185 (966)
...+.++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+... |+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 44578999999999999998653 224568899999999999999999866311 111
Q ss_pred eEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 186 SYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
. .++ . ....+...+. ++..++... -..+++=++|+|+++.. .....|+..+.....
T Consensus 93 ~-~ld-~---~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 93 H-ELD-A---ASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred E-Eec-c---cccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 0 010 0 0011111111 111111000 01233447899999764 346666666655556
Q ss_pred CcEEEEEe-Cchhhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 264 GSRIIITT-RDKHVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 264 gs~IIiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
++.+|++| +...+... .....++++++++.++..+.+.+.+-...... ..+.+..|++.++|..-
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMR 217 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 67766655 44444432 22346899999999999988887664332211 12457888999998664
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0016 Score=66.28 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=110.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
..+++...+.+.+..+-..-.++.+++.|+|.-|.|||.++|++..-..+.=-..+.++ ........+...+..+
T Consensus 28 ~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~ 102 (269)
T COG3267 28 GLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVAD 102 (269)
T ss_pred hhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHH
Confidence 33444455544444443333456679999999999999999955554332222222332 2334445666666666
Q ss_pred HhCCCCCCCChhhhHHHHHHHh-----cCCc-EEEEEecCCCh--HHHHHHh---cccCCCCCCcEEEEEeCch------
Q 046086 212 LLNDRNVKNSPNIVLNFQSKRF-----TRKK-VLIVFDDVTHL--KQIEFLI---GRIDWLASGSRIIITTRDK------ 274 (966)
Q Consensus 212 l~~~~~~~~~~~~~~~~l~~~L-----~~k~-~LlVLDdv~~~--~~~~~l~---~~~~~~~~gs~IIiTTR~~------ 274 (966)
+...+ ..........+.+.| ++++ +.+++|+..+. ++++.+. ..-.....--+|+..-..+
T Consensus 103 l~~~p--~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr 180 (269)
T COG3267 103 LESQP--KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLR 180 (269)
T ss_pred hccCc--cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhc
Confidence 65532 223333333333332 4566 99999998543 3344433 2212112222344332222
Q ss_pred -hhhhcC--CcceeEeeccCChhhHHHHHhhhhcCCCCCCccH-HHHHHHHHHHcCCCchhHHhHhh
Q 046086 275 -HVLSNC--LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASY-KELTQEAVKYAKGVPLALKVLGS 337 (966)
Q Consensus 275 -~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~iv~~~~G~PLal~~~g~ 337 (966)
.+.... ++.-.|++.+++.++...++.++.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 181 ~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 181 LPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 011111 2222399999999999888888765543333222 35567888899999999887764
No 151
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.0013 Score=70.34 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=100.0
Q ss_pred CCccccccchHHHHHHhhhcCCCCc-eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHH
Q 046086 131 NKELVGVECPINEIESLLRTGSAGV-CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLL 209 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 209 (966)
.+.+.+|+.++..+..++...+... ..|.|.|-+|.|||.+.+++.+... ...+|+.++. ......+.++++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e----cft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE----CFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH----hccHHHHHHHHH
Confidence 4678899999999999997655434 3458999999999999999998763 2457887543 455666777777
Q ss_pred HHHhC-CCC-CC-----CChhhhHHHHHH--Hh--cCCcEEEEEecCCChHHHH-----HHhcccCCCCCCcEEEEEeCc
Q 046086 210 STLLN-DRN-VK-----NSPNIVLNFQSK--RF--TRKKVLIVFDDVTHLKQIE-----FLIGRIDWLASGSRIIITTRD 273 (966)
Q Consensus 210 ~~l~~-~~~-~~-----~~~~~~~~~l~~--~L--~~k~~LlVLDdv~~~~~~~-----~l~~~~~~~~~gs~IIiTTR~ 273 (966)
.++.. ..+ .. .+..+....+.+ .. +++.++||||+++...+.+ .+.....-.....-.|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 77641 111 11 111122222222 12 2468999999998766422 222111111122334444443
Q ss_pred hh---hhhcCCc--ceeEeeccCChhhHHHHHhhhh
Q 046086 274 KH---VLSNCLV--DQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 274 ~~---v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.. -....+. ..++..+.-+.+|..+++.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 32 1211222 2356678889999998886653
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0022 Score=75.89 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=106.1
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
|....+++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+...- ... ...+.-...+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~----------~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG----------EPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----------CCCCccHHHH
Confidence 4456789999999999999987542 345677899999999999999998653210 000 0000000011
Q ss_pred HHHHHHhCC-----CCCCCChhhhHHHHHHH-----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 207 QLLSTLLND-----RNVKNSPNIVLNFQSKR-----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 207 ~ll~~l~~~-----~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
.+......+ .......+... .+.+. ..+++-++|+|+++.. ..+..|+..+........+|++|...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 110000000 00001111111 11111 1345568889999764 45666766655444555656555433
Q ss_pred -hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 275 -HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 275 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
.+... ......++..+++.++..+.+...+-...... ..+.+..|++.++|.+..
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 33322 12235788899999998888877663322211 134577888888887743
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.68 E-value=0.00038 Score=86.63 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-----C-C
Q 046086 111 LIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----F-E 184 (966)
Q Consensus 111 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 184 (966)
.+++...++.++-. ....+.++||+++++++.+.|... ...-+.++|++|+|||++|+.++.++... . .
T Consensus 161 ~l~~~~~~l~~~a~---~~~~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAI---DGNLDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHH---cCCCCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45555555444321 123456899999999999999753 23346799999999999999999987532 1 2
Q ss_pred ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhH-HHHHHHhcCCcEEEEEecCCChH---------HHHH-
Q 046086 185 GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVL-NFQSKRFTRKKVLIVFDDVTHLK---------QIEF- 253 (966)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~---------~~~~- 253 (966)
..+|..+.... ..........+... ..+.+.-..++.+|++|++...- +...
T Consensus 236 ~~i~~l~~~~l-----------------~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 236 KLVITLDIGLL-----------------LAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CeEEEeeHHHH-----------------hccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 33443322111 00000111112222 22222223568899999984221 1222
Q ss_pred HhcccCCCCCCcEEEEEeCchhhhhc-------CCcceeEeeccCChhhHHHHHhh
Q 046086 254 LIGRIDWLASGSRIIITTRDKHVLSN-------CLVDQIYEVKELLDVDALKLFSR 302 (966)
Q Consensus 254 l~~~~~~~~~gs~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 302 (966)
|.+.+. ...-++|.+|........ ......++++..+.++..+++..
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 222222 122456666665543111 11224678888999998888764
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.67 E-value=0.0018 Score=66.31 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=42.2
Q ss_pred cCCCCccccccchHHHHHHhhh---cCCCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 128 ENDNKELVGVECPINEIESLLR---TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
+...+.++|.|.+.+.|.+-.. .+ ....-|.+||..|.|||++++++.+++..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 4456789999999988866432 22 2345678899999999999999999876543
No 155
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.0016 Score=67.79 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=114.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc--cCCceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR--HFEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|...++++|.+..+..|...+.. ...+....+|++|.|||+-|++++.++-. -|..++--.+. +...+..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchh
Confidence 55567899999999999988865 56778999999999999999999987643 34443322222 2222221111
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHh--cCCc-EEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhhh-c
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRF--TRKK-VLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVLS-N 279 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~-~ 279 (966)
+++ .+.........+.. ...+ =.+|||+++.. +.|..|......+...+|.|+.+....... .
T Consensus 107 ~Ki-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 107 EKI-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhh-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 111 11101100000000 0122 37889999875 458888887777777777665544432221 1
Q ss_pred C-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHhH
Q 046086 280 C-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP-LALKVL 335 (966)
Q Consensus 280 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~~ 335 (966)
. .....|..++|.+++...-+...+-.....-+ .+..+.|+++++|-- -|+.++
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 1 12246788999999888888877754443322 356788999998843 344333
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.0011 Score=77.47 Aligned_cols=153 Identities=13% Similarity=0.176 Sum_probs=89.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCC--ceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFE--GSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..+.|+|..|.|||.|++++++.....+. .+.|+. ...+..++...+... ....+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHh
Confidence 45899999999999999999998765442 334554 122333333332211 112233334
Q ss_pred cCCcEEEEEecCCCh---HHH-HHHhcccCC-CCCCcEEEEEeCch---------hhhhcCCcceeEeeccCChhhHHHH
Q 046086 234 TRKKVLIVFDDVTHL---KQI-EFLIGRIDW-LASGSRIIITTRDK---------HVLSNCLVDQIYEVKELLDVDALKL 299 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 299 (966)
++ .=+|||||++.. +.+ +.+...++. ...|..|||||+.. .+...+...-+++++..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 247888999543 111 222222111 13456788888764 1223334556889999999999999
Q ss_pred HhhhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 046086 300 FSRRAFGEDDPNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 300 f~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL 330 (966)
+.+++-.....- -.+++.-|++.+.+..-
T Consensus 455 L~kka~~r~l~l--~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 455 LRKKAVQEQLNA--PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHhcCCCC--CHHHHHHHHHhccCCHH
Confidence 998874332211 23566667776665543
No 157
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.65 E-value=0.00096 Score=70.55 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=111.2
Q ss_pred Cccccccc---hHHHHHHhhhcC-CCCceEEEEeecCCCchhHHHHHHHHHhhccCCc------eEEEEeehhhhccCCH
Q 046086 132 KELVGVEC---PINEIESLLRTG-SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG------SYFAHNVQEAQENGGL 201 (966)
Q Consensus 132 ~~~vGr~~---~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~ 201 (966)
+.+||-.. .+++|++++... ....+-+.|+|.+|+|||++++++.......++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 44566543 345666666543 2345669999999999999999999876554432 22222 4566788
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC-CcEEEEEecCCCh-----HHHHHHhcc---cCCCCCCcEEEEEeC
Q 046086 202 AHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR-KKVLIVFDDVTHL-----KQIEFLIGR---IDWLASGSRIIITTR 272 (966)
Q Consensus 202 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~~~---~~~~~~gs~IIiTTR 272 (966)
..+...|+.++..................+.++. +-=+||+|++.+. .+-+.++.. +...-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8999999999887754444444545444455543 3338899999653 122222222 211122344555555
Q ss_pred chhhhhcC-----CcceeEeeccCChhh-HHHHHhhhh--cCCC-CCCccHHHHHHHHHHHcCCCchhHH
Q 046086 273 DKHVLSNC-----LVDQIYEVKELLDVD-ALKLFSRRA--FGED-DPNASYKELTQEAVKYAKGVPLALK 333 (966)
Q Consensus 273 ~~~v~~~~-----~~~~~~~l~~L~~~e-a~~Lf~~~a--~~~~-~~~~~~~~~~~~iv~~~~G~PLal~ 333 (966)
+-.-+-.. .--..+.++.+..++ ..+|+.... ..-. ...-...+++..|...++|+.--+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 43221110 112355666665544 344443322 1111 1122346789999999999874433
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00041 Score=86.17 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.++||+.++.++.+.|... ...-+.++|.+|+||||||+.++.++.... ...+|..+.......
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag---- 248 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG---- 248 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc----
Confidence 34567999999999999998653 234577999999999999999999875422 223333222111000
Q ss_pred HHHHHHHHHHhCCCCCCCChhhh-HHHHHHHh-cCCcEEEEEecCCChH---------HHHH-HhcccCCCCCC-cEEEE
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIV-LNFQSKRF-TRKKVLIVFDDVTHLK---------QIEF-LIGRIDWLASG-SRIII 269 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~-~~~l~~~L-~~k~~LlVLDdv~~~~---------~~~~-l~~~~~~~~~g-s~IIi 269 (966)
. ......+.. ...+.+.- .+++++|++|++.... +... |.+.+ ..| -++|-
T Consensus 249 ------------~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~Ig 312 (857)
T PRK10865 249 ------------A-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVG 312 (857)
T ss_pred ------------c-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEEE
Confidence 0 000111111 12222211 2568999999985442 1223 33332 233 45565
Q ss_pred EeCchhhhhc-------CCcceeEeeccCChhhHHHHHhhhh
Q 046086 270 TTRDKHVLSN-------CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 270 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
||........ ...-..+.+...+.++..+++....
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5554432110 0112256677778899998886544
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.00066 Score=84.73 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=87.2
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.+|||+.++.++.+.|... ....+.++|.+|+|||++|+.++.++...+ ...+|..+...
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~-------- 239 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA-------- 239 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH--------
Confidence 34567999999999999998653 234566899999999999999999875432 22333322211
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHh--cCCcEEEEEecCCChH----------HHHHHhcccCCCCCC-cEEEE
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF--TRKKVLIVFDDVTHLK----------QIEFLIGRIDWLASG-SRIII 269 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-s~IIi 269 (966)
+ .. ........+.....+.+.+ .+++.+|++|++.... ....|.+.+ ..| -++|-
T Consensus 240 -l----~a----~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~Ig 307 (852)
T TIGR03346 240 -L----IA----GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIG 307 (852)
T ss_pred -H----hh----cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEE
Confidence 1 00 0000011112222222222 2468999999986432 122233222 233 35555
Q ss_pred EeCchhhhhc-------CCcceeEeeccCChhhHHHHHhhhh
Q 046086 270 TTRDKHVLSN-------CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 270 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
+|........ ...-..+.++.++.++..+++....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5554432110 0122457899999999999887653
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=7.5e-05 Score=55.11 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=31.6
Q ss_pred CccEEEcCCCCccccchHhhcCCCCCEEeecCCCCc
Q 046086 733 STEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 733 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
+|++|+|++|+|+.+|..+.+|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 799999999999999988999999999999999854
No 161
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.63 E-value=0.001 Score=78.11 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=98.4
Q ss_pred CCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...++++|.+...+++.+++.. +....+-+.++|++|.|||++|++++......| +...
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~------ 120 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSIS------ 120 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eecc------
Confidence 3456788998888777665541 122234588999999999999999998754332 2110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
...+... ..+ .........+.......+.+|++||++... .+..++..++..
T Consensus 121 --~~~~~~~----~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 121 --GSDFVEM----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHHHHH----Hhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 0011111 000 011122333344445567899999985431 122333333322
Q ss_pred -CCCcEEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 262 -ASGSRIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
..+..||.||....... ....+..++++..+.++-.++|..+.-....... .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 23445666666553222 1234678899999999999999887643222111 11346777777643
No 162
>CHL00176 ftsH cell division protein; Validated
Probab=97.63 E-value=0.00065 Score=80.96 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=100.9
Q ss_pred CCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 130 DNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
..++++|.++..+++.+.+.. +..-.+-|.++|++|.|||++|++++.+....| +....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~is~------ 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FSISG------ 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----eeccH------
Confidence 346788998888887776531 112245689999999999999999998753322 22110
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC--
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL-- 261 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~-- 261 (966)
..+.... .+ .........+.......+.+|++||++... .+..++...+.+
T Consensus 250 --s~f~~~~----~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 --SEFVEMF----VG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHHh----hh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0011110 00 011123334445556788999999996431 133444333322
Q ss_pred CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCC
Q 046086 262 ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKG 327 (966)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G 327 (966)
..+..||.||.....+.. ...+..+.++..+.++-.+++..++-...... ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~---d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP---DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch---hHHHHHHHhcCCC
Confidence 245566777766543322 13456788999999999999988874322111 1234566677766
No 163
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.62 E-value=0.00016 Score=79.39 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=60.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCCh------hhhHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSP------NIVLN 227 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~~~~ 227 (966)
-..++|+|++|.|||||++.+++.+... |+..+|+..+++ ....+.++++.+...+.......... ....+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3468999999999999999999987655 998999886643 23467788887754433221111111 11111
Q ss_pred HHHH-HhcCCcEEEEEecCCChH
Q 046086 228 FQSK-RFTRKKVLIVFDDVTHLK 249 (966)
Q Consensus 228 ~l~~-~L~~k~~LlVLDdv~~~~ 249 (966)
..+. +-.+++++|++|++....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 1111 236899999999996654
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.00039 Score=74.28 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=57.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
+.+.++|.+|+|||.||.++++.+..+...++|+. ...+...+........ . .....+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~--~----~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG--K----EDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc--c----ccHHHHHHHhcC
Confidence 45889999999999999999998876644455554 1223333333222111 1 112223344444
Q ss_pred CcEEEEEecCC--ChHH--HHHHhcccCC-CCCCcEEEEEeCch
Q 046086 236 KKVLIVFDDVT--HLKQ--IEFLIGRIDW-LASGSRIIITTRDK 274 (966)
Q Consensus 236 k~~LlVLDdv~--~~~~--~~~l~~~~~~-~~~gs~IIiTTR~~ 274 (966)
-. ||||||+. ...+ .+.+...++. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 2222 2222222221 13566789998644
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0021 Score=70.14 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=107.1
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---------------CCceEEEEeehhhh
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---------------FEGSYFAHNVQEAQ 196 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------F~~~~~~~~~~~~~ 196 (966)
.+++|.+..++.+.+.+..+ .-.+...++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46899999999999998653 224688999999999999999999865321 22233443110000
Q ss_pred ccCCHHHHHHHHHHHHh--CCCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEE
Q 046086 197 ENGGLAHLRQQLLSTLL--NDRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRI 267 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~--~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 267 (966)
... +-..-..... ......-..+. ...+.+.+ .+++=++|+|+++.. .....|+..+...+ .+.+
T Consensus 83 -g~~---~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 -GKL---ITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred -ccc---cchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000 0000000000 00000011111 12222222 345568888998654 34555655554444 4455
Q ss_pred EEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 268 IITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 268 IiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
|++|.+. .+.... .....+++.+++.++..+.+....... ... .....++..++|.|.....+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHHH
Confidence 5555444 444332 234688999999999999998764211 111 11357889999999655443
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00036 Score=65.94 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEeecCCCchhHHHHHHHHHhh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 167
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=1.3e-05 Score=82.07 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=35.1
Q ss_pred CceeEEEecCCCCcccc------cccccceEeecCCCCCccccccc-ccccccceecccCCCCCCCCC--CCCCCccCcE
Q 046086 523 TDVRYFEWHEFPLKTLN------IRAENLVSLKLPGSNVEQLWDDV-QNLVNIKEIDLHGSKQLSKLP--DLSQARNLER 593 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp------~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~ 593 (966)
..++.|++.+|.+.... .+++.|++|+|++|.+..--... ..+.+|+.|-|.+..+.-.-. .+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 44555555555544433 44555555555555544221111 234455555555543221111 1344555555
Q ss_pred EeccCc
Q 046086 594 LKLDGC 599 (966)
Q Consensus 594 L~L~~~ 599 (966)
|.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555554
No 168
>PRK12377 putative replication protein; Provisional
Probab=97.58 E-value=0.00016 Score=75.76 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=30.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876655566665
No 169
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=4.6e-06 Score=89.36 Aligned_cols=108 Identities=21% Similarity=0.247 Sum_probs=49.5
Q ss_pred ccccceEeecCC-CCCccc--ccccccccccceecccCCCCCCCC---CCCCCCccCcEEeccCccCCcc--ccccccCC
Q 046086 541 RAENLVSLKLPG-SNVEQL--WDDVQNLVNIKEIDLHGSKQLSKL---PDLSQARNLERLKLDGCSSLME--THSSIQYL 612 (966)
Q Consensus 541 ~l~~L~~L~L~~-n~i~~l--~~~~~~l~~L~~L~Ls~n~~~~~~---p~l~~l~~L~~L~L~~~~~~~~--~~~~l~~l 612 (966)
...+|++|+|.. ..|+.. -.-...+++|++|++|.|.....- +-+.+..+|+.+.+.||.-.+. +-..=+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 344555555544 233311 111345677777777777543331 1144555666666666643221 11111233
Q ss_pred CcccEEeccCCCCCcccCCcc---CCCcccEEEecCCCC
Q 046086 613 NKLEVLDLRLCESLRSLPDTI---CSESLFELRLWGCLN 648 (966)
Q Consensus 613 ~~L~~L~L~~n~~l~~lp~~~---~l~~L~~L~L~~~~~ 648 (966)
.-+..+++..|..+....-+. +...|+.|..++|..
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD 306 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC
Confidence 344455555554333222111 345556666666554
No 170
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.54 E-value=4e-06 Score=89.78 Aligned_cols=198 Identities=20% Similarity=0.295 Sum_probs=102.9
Q ss_pred hhcCCCCCceEEEecCCCccccccCCCC-C-CceeEEEecCCC-Ccc-----cccccccceEeecCCCC-Ccc--ccccc
Q 046086 494 TFSKMPKLRFLKFYGKNKCMLSHFKGVP-F-TDVRYFEWHEFP-LKT-----LNIRAENLVSLKLPGSN-VEQ--LWDDV 562 (966)
Q Consensus 494 ~f~~l~~L~~L~l~~n~~~~l~~l~~~~-~-~~L~~L~l~~~~-l~~-----lp~~l~~L~~L~L~~n~-i~~--l~~~~ 562 (966)
.-.+++++..|.++++.......+-... + .+|++|++..|. ++. +....++|.+|+++.+. |+. +-.-.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 3456777777777766211101111111 1 777777777754 222 23567788888887653 221 11224
Q ss_pred ccccccceecccCCCCCCCCCCC----CCCccCcEEeccCccCCcccc--ccccCCCcccEEeccCCCCCcccCCcc---
Q 046086 563 QNLVNIKEIDLHGSKQLSKLPDL----SQARNLERLKLDGCSSLMETH--SSIQYLNKLEVLDLRLCESLRSLPDTI--- 633 (966)
Q Consensus 563 ~~l~~L~~L~Ls~n~~~~~~p~l----~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~L~~n~~l~~lp~~~--- 633 (966)
.++..|+.+.+.+|.-... ..+ +...-+.++++..|..+.... ..-..+..|+.|+.++|...+..+-+-
T Consensus 239 rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred ccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 4566677777777642211 111 233445666666775444332 112457788899998887654433221
Q ss_pred CCCcccEEEecCCCCCCCCccccc----CcccEEeecccccc---cccccccCCCCCCEEeccCCC
Q 046086 634 CSESLFELRLWGCLNLKNFPEISS----SHIHFLDLYECGIE---DMPLSIECLSKLNSLDIHNCT 692 (966)
Q Consensus 634 ~l~~L~~L~L~~~~~l~~~p~~~~----~~L~~L~L~~n~i~---~lp~~~~~l~~L~~L~L~~n~ 692 (966)
+..+|+.|-+++|+.+...-.... ..|+.|++.++... ++-.--.+++.|+.|.|++|.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 667888888888875433211110 04555555544332 121222344555555555554
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.50 E-value=0.00038 Score=66.39 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=28.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999998766553445554
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.003 Score=69.38 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+.|+ +|+|+++.. +....|+..+....+++.+|+||.+.. ++... .....+.+.+++.+++.+.+.... .. ..
T Consensus 106 ~~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~~ 182 (328)
T PRK05707 106 GRKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-SD 182 (328)
T ss_pred CCeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-CC
Confidence 3454 467999764 456666666655567788888887764 33221 224578999999999999987653 11 11
Q ss_pred CccHHHHHHHHHHHcCCCchhHHhH
Q 046086 311 NASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
.+.+..++..++|.|+....+
T Consensus 183 ----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999754444
No 173
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0021 Score=68.48 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=103.6
Q ss_pred CCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
...+=|-+..+++|.+..... =+..+=|.++|++|.|||-||++|+++.... |+..++.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS----- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS----- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH-----
Confidence 345668899999998876532 1234568899999999999999999987544 4443321
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCChH----------------HHHHHhcccC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHLK----------------QIEFLIGRID 259 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~ 259 (966)
.+.++.+. ++...+++. -...+..|.+|.++... .+-.|+..++
T Consensus 220 ---ElVqKYiG-------------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 ---ELVQKYIG-------------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred ---HHHHHHhc-------------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 12222211 112222222 24568899999985432 1344566666
Q ss_pred CCCCC--cEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 260 WLASG--SRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 260 ~~~~g--s~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
.|.+. -+||..|-..+++.. -..+..++++.-+.+.-.++|.-|+-+-.. ..-++ +.+++.+.|.-
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 66543 588888876655432 245678999977777778888877744332 22333 34555565544
No 174
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=6.8e-05 Score=55.32 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=28.6
Q ss_pred ccceEeecCCCCCcccccccccccccceecccCCCCC
Q 046086 543 ENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQL 579 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~ 579 (966)
++|++|++++|+|+.+|..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3688888888888888877888888888888888743
No 175
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.008 Score=71.51 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=105.1
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-C-C--c--eE-------------E
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-F-E--G--SY-------------F 188 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~--~--~~-------------~ 188 (966)
|....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... . . . .| |
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 345678999999999999988653 223567899999999999999999875321 1 0 0 00 0
Q ss_pred EEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH-hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCc
Q 046086 189 AHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR-FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGS 265 (966)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 265 (966)
+. +. .....+...+ +++... +... ..+++=++|+|+|+.. .....|+..+....+..
T Consensus 91 ~e-id-~~s~~~v~~i-r~l~~~-----------------~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 91 FE-ID-GASNTGVDDI-RELREN-----------------VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred ee-ee-ccCccCHHHH-HHHHHH-----------------HHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 00 00 0000111111 111111 1100 1234447889999764 34666666665555677
Q ss_pred EEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHhH
Q 046086 266 RIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP-LALKVL 335 (966)
Q Consensus 266 ~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~~ 335 (966)
.+|++|.+. .+... ......+++..++.++..+.+...+-.....- ..+.+..+++.++|.. .|+..+
T Consensus 151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 776655443 33322 12235778899999988887776553222111 1245677888888865 344443
No 176
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.00044 Score=73.39 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=28.9
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.-+.++|++|+|||.||.++++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998766655566664
No 177
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.0034 Score=69.11 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=106.6
Q ss_pred CCCCccccccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCc--eEEEEeehhhhccCCHHHH
Q 046086 129 NDNKELVGVECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG--SYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l 204 (966)
..+..++||+.++..+.+++.. +.+..+-+.|.|-+|.|||.+...++.+....... ++++.+..- .....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl----~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL----TEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc----cchHHH
Confidence 3456899999999999999863 34556789999999999999999999977654433 356654321 223455
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcC--CcEEEEEecCCChHH--HHHHhcccCCC-CCCcEEEEEeCch-----
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR--KKVLIVFDDVTHLKQ--IEFLIGRIDWL-ASGSRIIITTRDK----- 274 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IIiTTR~~----- 274 (966)
...+.+.+...........+....+.....+ ..+|+|+|.+|.... -+.+...+.|. -+++|+|+.--..
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 5666666533332222223344444444443 358999999977542 12222222232 3667766532211
Q ss_pred -hhhhcC-----CcceeEeeccCChhhHHHHHhhhhc
Q 046086 275 -HVLSNC-----LVDQIYEVKELLDVDALKLFSRRAF 305 (966)
Q Consensus 275 -~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~ 305 (966)
..+... -....+..++.+.++-.+++.++.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 111111 1234677889999999999998873
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00072 Score=79.94 Aligned_cols=54 Identities=26% Similarity=0.220 Sum_probs=44.6
Q ss_pred ccCCCCccccccchHHHHHHhhhcCC---CCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 127 FENDNKELVGVECPINEIESLLRTGS---AGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|...++++|-+..++++..++.... ...++++|+|++|.||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45667889999999999999987432 3346799999999999999999998654
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.41 E-value=0.001 Score=80.76 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-----C-CceEEEEeehhhhccCCHHHH
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-----F-EGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~~~~~~~~~l 204 (966)
.+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++... + +..+|.... .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~-- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G-- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H--
Confidence 3569999999999999887532 2346789999999999999999875332 1 223332111 1
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHh-cCCcEEEEEecCCCh----------HHHHH-HhcccCCCCCCcEEEEEeC
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTHL----------KQIEF-LIGRIDWLASGSRIIITTR 272 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~-l~~~~~~~~~gs~IIiTTR 272 (966)
.++ .........+.....+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-++|-+|.
T Consensus 252 --~ll----aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 --SLL----AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred --HHh----cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 111 00001112222222222222 346779999998532 12222 222221 12234555554
Q ss_pred chhhhhc-------CCcceeEeeccCChhhHHHHHhhhh
Q 046086 273 DKHVLSN-------CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 273 ~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
..+.... .+.-..+++++++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4332110 0112478999999999999988654
No 180
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.39 E-value=0.0023 Score=78.97 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=95.4
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
..+++.|++..++++.+.+.. +-...+-|.++|++|.|||+||+.+++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 345688999999999887642 112345688999999999999999999775433 2221 1110000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCCC-CCC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDWL-ASG 264 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~g 264 (966)
. ...........+.......+.+|+||+++... ....+...++.. ..+
T Consensus 252 -------------~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 252 -------------Y-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -------------c-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 0 00001112223333344567899999985421 122333333222 233
Q ss_pred cEEEE-EeCchhhhh-c----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 265 SRIII-TTRDKHVLS-N----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 265 s~IIi-TTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
..+|| ||....-.. . ...+..+.++..+.++..+++..+.-+...... .....+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 34444 554432211 1 123456788888888888888765422111111 12456777777754
No 181
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.39 E-value=0.00025 Score=70.75 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=27.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..-+.++|.+|+|||.||.++++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346999999999999999999997765544566665
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0016 Score=68.08 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=29.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999998876655566664
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.28 E-value=0.004 Score=76.89 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=98.4
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
-..+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +... .
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v~-~----- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAVR-G----- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEe-h-----
Confidence 35678888888888776642 112345588999999999999999999875433 2211 0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--------------HHHHHhcccCCC--CC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--------------QIEFLIGRIDWL--AS 263 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~ 263 (966)
. +++.... ..........+...-...+.+|++|+++... .+..++..++.. ..
T Consensus 521 --~----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 --P----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred --H----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 0 1111110 0111122223333335567899999985421 133344443322 23
Q ss_pred CcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 264 GSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 264 gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
+..||.||.....+.. -..+..+.++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4456667766644332 134578899999999999999766533221 1122 345666666643
No 184
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.27 E-value=0.003 Score=71.57 Aligned_cols=163 Identities=18% Similarity=0.121 Sum_probs=94.1
Q ss_pred chHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCC
Q 046086 139 CPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNV 218 (966)
Q Consensus 139 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 218 (966)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++...........+.+
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d--------------- 82 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLD--------------- 82 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHH---------------
Confidence 3444555554322 2289999999999999997776655444 444432111111111111
Q ss_pred CCChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcC------CcceeEeeccCC
Q 046086 219 KNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNC------LVDQIYEVKELL 292 (966)
Q Consensus 219 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~------~~~~~~~l~~L~ 292 (966)
....+...-..++..|+||.|.....|+..+..+...++. +|++|+-+....... |-...+++-||+
T Consensus 83 ------~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 83 ------LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ------HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1111111111277899999999999998887776655666 899888877544321 334678999999
Q ss_pred hhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 293 DVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 293 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
..|-..+-...+ ... .. +..-+-.-..||.|-++..-
T Consensus 156 F~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred HHHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCc
Confidence 998876543111 000 11 11112223468999876553
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0028 Score=70.36 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=80.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
....+.|||..|.|||.|++++.+......+...++.... ......+...+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s--------e~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS--------EDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH--------HHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 3667999999999999999999998877776333332111 1122222222221 1233444444
Q ss_pred cCCcEEEEEecCCChH---H-HHHHhcccCC-CCCCcEEEEEeCch---------hhhhcCCcceeEeeccCChhhHHHH
Q 046086 234 TRKKVLIVFDDVTHLK---Q-IEFLIGRIDW-LASGSRIIITTRDK---------HVLSNCLVDQIYEVKELLDVDALKL 299 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 299 (966)
.-=++++||++-.. . -+.+...++. ...|-.||+|++.. .+.......-++++.+++.+...+.
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 22378889984421 1 2222222211 12444899998655 2223334567899999999999999
Q ss_pred HhhhhcC
Q 046086 300 FSRRAFG 306 (966)
Q Consensus 300 f~~~a~~ 306 (966)
+.+.+..
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9987643
No 186
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0059 Score=72.24 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=109.8
Q ss_pred CCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...+++.|.|+..++|++.... +..-++=|.++|++|.|||-||++++-+-. +=|+.....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS---- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS---- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH----
Confidence 3457899999988888877651 222356689999999999999999998643 334432211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-----------------HHHHHhcccCCC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-----------------QIEFLIGRIDWL 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----------------~~~~l~~~~~~~ 261 (966)
++..-..+. ......+.....-...+..|.+|+++... .+..|+...+.+
T Consensus 379 --------EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 --------EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred --------HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 111111110 01122222333334567788888764321 266677777766
Q ss_pred CCCcEEE--EEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 262 ASGSRII--ITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 262 ~~gs~II--iTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
..+..|| -+|+..+++.. -..+..+.++.-+.....++|.-|+-..... .+..++++ ++...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 5555343 35555554432 2346778899899999999999988544333 34456666 88888888854
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.0024 Score=66.28 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH-h-hccCCceEE
Q 046086 130 DNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK-T-SRHFEGSYF 188 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~ 188 (966)
+...+.++......+..++.. ..+|.+.|.+|.|||+||.+++.+ + .+.|...+.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 345677888888888887753 248999999999999999999884 3 344554433
No 188
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.26 E-value=0.0038 Score=72.10 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=94.6
Q ss_pred CCccccccchHHHHHHhhh--------cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHH
Q 046086 131 NKELVGVECPINEIESLLR--------TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 202 (966)
..++.|.+...+.+.+... .+-...+-|.++|++|.|||.+|+++++.+.-.| +-++ ...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-VGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-hHH--------
Confidence 3567888776666654321 1223356689999999999999999999875332 1111 110
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--------------HHHHHhcccCCCCCCcEEE
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--------------QIEFLIGRIDWLASGSRII 268 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~~~~~~~gs~II 268 (966)
+..... ..........+...-...+.+|++|+++..- .+..+...+.....+.-||
T Consensus 295 -----l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 -----LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred -----hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 100000 0011112222222234578899999986421 0122222222223344566
Q ss_pred EEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 269 ITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 269 iTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
.||.+...+. ....+..+.++..+.++-.++|..+..+....... ......+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 6776654322 22456788999999999999998877442211100 011345566666543
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=97.24 E-value=0.0013 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=26.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+.|+|++|+|||+||..++.....+-..+.|+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346889999999999999999887554433444543
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00011 Score=88.29 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=81.9
Q ss_pred CCCcccEEEecCCCCCCC-Cccc--ccCcccEEeecccccccccccccCCCCCCEEeccCCCCcc-cccccccCCCCCcE
Q 046086 634 CSESLFELRLWGCLNLKN-FPEI--SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLE-YIKSSIFKLKSLKH 709 (966)
Q Consensus 634 ~l~~L~~L~L~~~~~l~~-~p~~--~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~ 709 (966)
-+|+|+.|.++|-..... |... ..++|..||+++++++.+ .++++|++|+.|.+.+-.+.. ..-..+.+|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 456666666665332111 1110 112589999999999888 679999999999998866543 22345778999999
Q ss_pred EEccCCCCCcccccc----ccCCCCCCCccEEEcCCCCcc--ccchHhhcCCCCCEEeecCC
Q 046086 710 IEISSCSNLKRFPEI----SSSCNREGSTEVLHLKGNNLE--RIPESIRHLSKLKSLDISYC 765 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~----~~~~~~~~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~n 765 (966)
||+|.-.... .+.. +..-..++.|+.||.|++.+. .+...+..-++|+.+.+-+|
T Consensus 225 LDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 225 LDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 9999844332 2211 111123559999999999877 33334455666666554443
No 191
>PRK06921 hypothetical protein; Provisional
Probab=97.23 E-value=0.00055 Score=72.97 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=29.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 190 (966)
...+.++|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999988765 45566765
No 192
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=7.9e-05 Score=75.47 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=109.3
Q ss_pred cccccccccceecccCCCCCCCCCC-----CCCCccCcEEeccCccCCcccc-ccccCCCcccEEeccCCCCCcccCCcc
Q 046086 560 DDVQNLVNIKEIDLHGSKQLSKLPD-----LSQARNLERLKLDGCSSLMETH-SSIQYLNKLEVLDLRLCESLRSLPDTI 633 (966)
Q Consensus 560 ~~~~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~l~~lp~~~ 633 (966)
+.+-++++|+.++||.|.+....|. +++.++|.+|.|++|.. +.+. ..++. -|.+ |..|+...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigk--al~~--la~nKKaa------ 154 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGK--ALFH--LAYNKKAA------ 154 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHH--HHHH--HHHHhhhc------
Confidence 3455778888888888877766662 56777888888877653 2221 11110 0000 01111111
Q ss_pred CCCcccEEEecCCCCCCCCccc-------ccCcccEEeeccccccc--c----cccccCCCCCCEEeccCCCCcc----c
Q 046086 634 CSESLFELRLWGCLNLKNFPEI-------SSSHIHFLDLYECGIED--M----PLSIECLSKLNSLDIHNCTRLE----Y 696 (966)
Q Consensus 634 ~l~~L~~L~L~~~~~l~~~p~~-------~~~~L~~L~L~~n~i~~--l----p~~~~~l~~L~~L~L~~n~~~~----~ 696 (966)
.-+.|++.....|.. ...|.. +..+|+.+.+..|+|.. + -..+..+.+|+.|+|.+|.++. .
T Consensus 155 ~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 155 DKPKLEVVICGRNRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred cCCCceEEEeccchh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 223345554444432 222211 01157788888887761 1 1235567889999999887643 2
Q ss_pred ccccccCCCCCcEEEccCCCCCcccccc----ccCCCCCCCccEEEcCCCCcc-------ccchHh-hcCCCCCEEeecC
Q 046086 697 IKSSIFKLKSLKHIEISSCSNLKRFPEI----SSSCNREGSTEVLHLKGNNLE-------RIPESI-RHLSKLKSLDISY 764 (966)
Q Consensus 697 ~p~~l~~l~~L~~L~Ls~~~~l~~~p~~----~~~~~~~~~L~~L~Ls~n~l~-------~lp~~i-~~l~~L~~L~L~~ 764 (966)
+...++.++.|+.|.+.+|-....-... +... ..++|..|-..+|.+. ++|... ..+|-|..|.+.+
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~-~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK-FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhh-cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 3445667788899998888654322111 1111 1237888888888543 244322 4577888888888
Q ss_pred CCC
Q 046086 765 CEW 767 (966)
Q Consensus 765 n~~ 767 (966)
|++
T Consensus 313 Nr~ 315 (388)
T COG5238 313 NRI 315 (388)
T ss_pred Ccc
Confidence 875
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0024 Score=75.97 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=74.5
Q ss_pred CccccccchHHHHHHhhhcC-------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 132 KELVGVECPINEIESLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
..++|.+..++.+.+.+... ..........|+.|+|||.||++++..+-..=+..+-++ .++..+.+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~EkHsV--- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEKHSV--- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHHHHH---
Confidence 56899999999998887631 122457788999999999999999997653334444443 4443333333
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcE-EEEEecCC--ChHHHHHHhcccCC
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKV-LIVFDDVT--HLKQIEFLIGRIDW 260 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~~~~ 260 (966)
+.+.+.++.-...++ -..+-+..+.++| +|.||+|+ +++.+..|+..++.
T Consensus 567 -----SrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 567 -----SRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -----HHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 333333221111111 3345566677877 77789995 45667777776654
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00012 Score=87.80 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=47.4
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCC--CCCCCCCccCcEEeccCccCCccc------cccccC
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSK--LPDLSQARNLERLKLDGCSSLMET------HSSIQY 611 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~--~p~l~~l~~L~~L~L~~~~~~~~~------~~~l~~ 611 (966)
.++++|..||+|+++++.+ .++++|++|+.|.+.+-.+..- +-++.++++|+.||+|........ -..-..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 4555666666666666666 5666666666666665443321 113556666666666653322211 112234
Q ss_pred CCcccEEeccCCCCC
Q 046086 612 LNKLEVLDLRLCESL 626 (966)
Q Consensus 612 l~~L~~L~L~~n~~l 626 (966)
||+|+.||.++....
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 677777777655443
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.01 Score=65.29 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=28.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4579999999999999999999987764433444544
No 196
>PRK06526 transposase; Provisional
Probab=97.14 E-value=0.0012 Score=69.87 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=26.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
.+-+.|+|++|+|||+||.++..+...+-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34689999999999999999998765443334443
No 197
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0011 Score=72.76 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.-+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998776655666765
No 198
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.12 E-value=0.0044 Score=67.18 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=26.1
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.-.+.++|||++|.|||.+|++++.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999987654
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.022 Score=62.14 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+++=++|+|+++... ....|+..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 345588889997653 4555665555556788777777755 344332 234578899999999998886531 11
Q ss_pred CccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 311 NASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1226678999999998655443
No 200
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=3.4e-05 Score=70.22 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=51.6
Q ss_pred CceeEEEecCCCCcccc----cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccC
Q 046086 523 TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDG 598 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~ 598 (966)
.+|+..++++|.++++| ..++.++.|+|++|.|..+|..+..++.|+.|+++.|.+.....-+..+.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 44555566666777666 33446777777777777777777777777777777777554433455566666666666
Q ss_pred cc
Q 046086 599 CS 600 (966)
Q Consensus 599 ~~ 600 (966)
|.
T Consensus 133 na 134 (177)
T KOG4579|consen 133 NA 134 (177)
T ss_pred Cc
Confidence 54
No 201
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00019 Score=72.79 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=115.9
Q ss_pred cccceEeecCCCCCc-----ccccccccccccceecccCCCCCCC------------CCCCCCCccCcEEeccCccCCcc
Q 046086 542 AENLVSLKLPGSNVE-----QLWDDVQNLVNIKEIDLHGSKQLSK------------LPDLSQARNLERLKLDGCSSLME 604 (966)
Q Consensus 542 l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~Ls~n~~~~~------------~p~l~~l~~L~~L~L~~~~~~~~ 604 (966)
+..++.++||+|-|. .+...+.+-.+|+..+++.-- ++. +|.+-+++.|+..+|++|-+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456667777777665 233445555666666665431 111 11133444555555555444333
Q ss_pred ccc----cccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccc----
Q 046086 605 THS----SIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS---- 676 (966)
Q Consensus 605 ~~~----~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~---- 676 (966)
.|. .+++-+.|.+|.|++|. +|.+...---+.|. .|..|.....-| .|+......|++...|..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~--~la~nKKaa~kp-----~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALF--HLAYNKKAADKP-----KLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHH--HHHHHhhhccCC-----CceEEEeccchhccCcHHHHHH
Confidence 332 23334444444444332 22221110000111 011222222222 499999999999866542
Q ss_pred -ccCCCCCCEEeccCCCCccc-----ccccccCCCCCcEEEccCCCCCcccccccc-CCCCCCCccEEEcCCCCccc-cc
Q 046086 677 -IECLSKLNSLDIHNCTRLEY-----IKSSIFKLKSLKHIEISSCSNLKRFPEISS-SCNREGSTEVLHLKGNNLER-IP 748 (966)
Q Consensus 677 -~~~l~~L~~L~L~~n~~~~~-----~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~-~~~~~~~L~~L~Ls~n~l~~-lp 748 (966)
+..-.+|+.+.+..|.+... +-..+..+.+|+.|+|.+|.....-...+. .+...+.|+.|.+..|-++. -.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 33346899999999976432 222355679999999999765432111110 11123368999999998872 21
Q ss_pred ----hHh--hcCCCCCEEeecCCCCcc
Q 046086 749 ----ESI--RHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 749 ----~~i--~~l~~L~~L~L~~n~~l~ 769 (966)
..+ ...|+|..|-..+|..-+
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcC
Confidence 122 346788888888887643
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00075 Score=65.93 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=40.1
Q ss_pred cccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCC-CCccCcEEeccCccCCccc-cccccCCCcccEEe
Q 046086 542 AENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLS-QARNLERLKLDGCSSLMET-HSSIQYLNKLEVLD 619 (966)
Q Consensus 542 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~-~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~ 619 (966)
..+...+||++|.+..+ ..+..++.|.+|.|++|+++..-|.+. .+++|..|.|.+|++.... -..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 33445555555555544 234455555556666555555555443 2345566666554422110 02334455555555
Q ss_pred ccCCC
Q 046086 620 LRLCE 624 (966)
Q Consensus 620 L~~n~ 624 (966)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55544
No 203
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00081 Score=65.71 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=30.0
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCC
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSC 715 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~ 715 (966)
...+||++|.+..++. +..+++|.+|.|++|.+...-|..-..+++|+.|.|.+|
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4555666665554432 455666666666666655544443334455555555553
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.011 Score=59.48 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=44.5
Q ss_pred cccCCCCccccccchHHHHHHhhh--cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCc
Q 046086 126 TFENDNKELVGVECPINEIESLLR--TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG 185 (966)
Q Consensus 126 ~~~~~~~~~vGr~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 185 (966)
..+.+...++|.|...+.+.+--. ...-..--|.+||--|.|||.|++++.+.+..+.-.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 334556789999999888765432 111223458899999999999999999998877655
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.0069 Score=75.44 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCccccccchHHHHHHhhhcC------CCC-ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 131 NKELVGVECPINEIESLLRTG------SAG-VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
...++|.+..++.+...+... .+. ...+.++|+.|+|||++|+.+++.+...-...+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i 632 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 456899999999988887531 111 24788999999999999999998764433333444
No 206
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.02 Score=66.58 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 131 NKELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
..+-+|.++..++|.+.|.. ..-.-++++++|++|+|||.|++.+++-+...|-... +.-++..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEA---------- 390 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEA---------- 390 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHH----------
Confidence 35568999999999998863 2234579999999999999999999998887773221 11121111
Q ss_pred HHHHHHhCCCC-CC-CChhhhHHHHHHHhcCCcEEEEEecCCChH------HHHHHhcccCCCC-------------CCc
Q 046086 207 QLLSTLLNDRN-VK-NSPNIVLNFQSKRFTRKKVLIVFDDVTHLK------QIEFLIGRIDWLA-------------SGS 265 (966)
Q Consensus 207 ~ll~~l~~~~~-~~-~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~~~~~~-------------~gs 265 (966)
++.++.. -. .-+....+.+++ .+.+.-+++||.+|... -.-+|+..++-.. .=|
T Consensus 391 ----EIRGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 391 ----EIRGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ----HhccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 1111110 11 111223333333 24566789999986432 1223333222110 114
Q ss_pred EE-EEEeCch-h-hh-hcCCcceeEeeccCChhhHHHHHhhhh
Q 046086 266 RI-IITTRDK-H-VL-SNCLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 266 ~I-IiTTR~~-~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.| .|||-+. . +. .....-+++++.+-+++|-++.-.++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 3444433 2 11 111233689999999999888877765
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.04 E-value=0.0066 Score=66.55 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..++|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998877654
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.03 E-value=0.0013 Score=73.81 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=42.7
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc--cCCceEEEE
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR--HFEGSYFAH 190 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 190 (966)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4577888888888888864 345889999999999999999997753 455555554
No 209
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0093 Score=68.53 Aligned_cols=154 Identities=20% Similarity=0.230 Sum_probs=89.0
Q ss_pred ccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCH
Q 046086 133 ELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGL 201 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 201 (966)
++=|.|+...+|.+.+.- +-...+-|..+|+||.|||++|+++++.-...| +..- .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvk-g------- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVK-G------- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eecc-C-------
Confidence 344477766777755531 224467799999999999999999999865554 2210 0
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCCCCCCcEEE
Q 046086 202 AHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDWLASGSRII 268 (966)
Q Consensus 202 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~II 268 (966)
.++++...++ +.....+..++.-+-.+.+|.||.+|... .+..|+..++.......|+
T Consensus 502 ----pEL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 502 ----PELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred ----HHHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 1112211111 11122333333334566888888875432 2455666655444443443
Q ss_pred E---EeCchhhhhc----CCcceeEeeccCChhhHHHHHhhhhcCCC
Q 046086 269 I---TTRDKHVLSN----CLVDQIYEVKELLDVDALKLFSRRAFGED 308 (966)
Q Consensus 269 i---TTR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 308 (966)
| |-|...+-.. -..+..+.++.-+.+...++|..++-+-.
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 3 3333322222 13567888888888888999999985433
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0043 Score=64.88 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=49.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh----ccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS----RHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQS 230 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 230 (966)
-|+|.++|++|.|||+|++++++++. .+|.....+..- -..+.-+.+++. ........+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin--------shsLFSKWFsES------gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN--------SHSLFSKWFSES------GKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe--------hhHHHHHHHhhh------hhHHHHHHHHHH
Confidence 37899999999999999999999654 456555555411 122333333322 122334555666
Q ss_pred HHhcCCc--EEEEEecCCCh
Q 046086 231 KRFTRKK--VLIVFDDVTHL 248 (966)
Q Consensus 231 ~~L~~k~--~LlVLDdv~~~ 248 (966)
+.+.++. +++.+|.|+..
T Consensus 243 ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHH
Confidence 6665544 45567998554
No 211
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.0057 Score=67.66 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=86.4
Q ss_pred cccc-ccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc---------------------CCceEEEE
Q 046086 133 ELVG-VECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH---------------------FEGSYFAH 190 (966)
Q Consensus 133 ~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 190 (966)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 666677777777543 234567899999999999999998865321 11111111
Q ss_pred eehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH----hcCCcEEEEEecCCCh--HHHHHHhcccCCCCCC
Q 046086 191 NVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR----FTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASG 264 (966)
Q Consensus 191 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~g 264 (966)
.. . .....++..+.+... ..+.+=++|+|+++.. +....|+..+....++
T Consensus 85 ~~---~---------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 85 PD---G---------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred cc---c---------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 00 0 001111111111110 1233446888998654 3456676666666678
Q ss_pred cEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhh
Q 046086 265 SRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRR 303 (966)
Q Consensus 265 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 303 (966)
+.+|++|.+.. +.... .....+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 88888877653 33321 23467899999999998888653
No 212
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.00 E-value=0.021 Score=70.87 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=40.9
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 132 KELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
...+|.+...+++.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588999999998886642 222345799999999999999999999876554
No 213
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.96 E-value=0.015 Score=66.25 Aligned_cols=94 Identities=23% Similarity=0.209 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhcccccccCCCCccccccchH----HHHHHhhhcCC------
Q 046086 83 MRKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDDTFENDNKELVGVECPI----NEIESLLRTGS------ 152 (966)
Q Consensus 83 ~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l----~~l~~~L~~~~------ 152 (966)
.++.++.||-++ ....+.++++++.+.++...... ...+-.++..+ ++|.+.+....
T Consensus 26 ~l~ei~~aLl~a-----------dV~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~ 92 (437)
T PRK00771 26 VVKDIQRALLQA-----------DVNVKLVKELSKSIKERALEEEP--PKGLTPREHVIKIVYEELVKLLGEETEPLVLP 92 (437)
T ss_pred HHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHhcccc--cccCCcHHHHHHHHHHHHHHHhCCCccccccC
Confidence 556677776542 22345666666666554322110 11121222222 34444443211
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
....+|.++|.+|+||||.|..++..+..+-..+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 2467899999999999999999998876543334444
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0022 Score=67.79 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=29.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+..-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4556999999999999999999999884434555654
No 215
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.95 E-value=0.00099 Score=68.77 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.3
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++|+|..|.||||+++.+...+..+|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999999999996665553
No 216
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.95 E-value=0.13 Score=57.31 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=65.0
Q ss_pred CcEEEEEecCCChH-----------HHHHHhcccCCCCCCcEEEEEeCchhhhhc----C--CcceeEeeccCChhhHHH
Q 046086 236 KKVLIVFDDVTHLK-----------QIEFLIGRIDWLASGSRIIITTRDKHVLSN----C--LVDQIYEVKELLDVDALK 298 (966)
Q Consensus 236 k~~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~ 298 (966)
++-+||+||..+.. +|...+.. ..=.+||++|-+...... + .+-+.+.+...+++.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 36799999984321 23333222 344689999988744332 2 244678899999999999
Q ss_pred HHhhhhcCCCCC-------------C-----ccHHHHHHHHHHHcCCCchhHHhHhhhhcC
Q 046086 299 LFSRRAFGEDDP-------------N-----ASYKELTQEAVKYAKGVPLALKVLGSFLFG 341 (966)
Q Consensus 299 Lf~~~a~~~~~~-------------~-----~~~~~~~~~iv~~~~G~PLal~~~g~~L~~ 341 (966)
+...+.-..... . .....-....++..||--.-|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 998887432110 0 123334566777788877777777777765
No 217
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.95 E-value=0.0075 Score=64.51 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...++++++|++|+||||++..++..+...-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987765533445554
No 218
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.93 E-value=0.02 Score=70.29 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=85.9
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 132 KELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
...+|.+...++|.+++.. +.....++.++|++|+||||+|+.++..+...|-... +..+ .+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~------~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGV------RDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCC------CCHHHhccc
Confidence 4589999999999888763 1234568999999999999999999987765442211 1111 111111100
Q ss_pred HHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChHH------HHHHhcccCCC---------------CCCcE
Q 046086 208 LLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQ------IEFLIGRIDWL---------------ASGSR 266 (966)
Q Consensus 208 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------~~~l~~~~~~~---------------~~gs~ 266 (966)
- ... ...........+... ....-+++||.++.... ...|...++.. -.+..
T Consensus 395 ~-~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 R-RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred h-hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0 000 000111222333322 22334788999854321 34444433210 12333
Q ss_pred EEEEeCchhhhhcC-CcceeEeeccCChhhHHHHHhhhh
Q 046086 267 IIITTRDKHVLSNC-LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 267 IIiTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
+|.|+....+.... ....++++.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 45555443322111 122478899999999888887765
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.93 E-value=0.0038 Score=67.87 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=29.9
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456899999999999999999998876544566665
No 220
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.92 E-value=0.018 Score=58.55 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCccccccchHHH---HHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHH
Q 046086 131 NKELVGVECPINE---IESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 131 ~~~~vGr~~~l~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 203 (966)
.+++||.+....+ |.+.|.. +....+-|..+|++|.|||.+|++++++.+..| +. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk---------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK---------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec----------
Confidence 4678998877654 4555542 334578899999999999999999999765332 22 10
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHH-HHHHhcCCcEEEEEecCCChH--------------HHHHHhcccCCC--CCCcE
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNF-QSKRFTRKKVLIVFDDVTHLK--------------QIEFLIGRIDWL--ASGSR 266 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~-l~~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~gs~ 266 (966)
+.+++.+..++ ....+.. ..+.-+..++++.+|.++... .+.+|+..++.. +.|..
T Consensus 184 -at~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 184 -ATELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred -hHHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 12222222111 1122222 223334578999999886532 245565555433 34555
Q ss_pred EEEEeCchhhhhcC---CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC
Q 046086 267 IIITTRDKHVLSNC---LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 267 IIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~ 328 (966)
.|-.|....++... ...+.++..--+++|-.+++..++-.-.-+-... .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 56666666555431 2345677788899999999998884322222111 45566666664
No 221
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0073 Score=68.41 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=86.9
Q ss_pred CCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 131 NKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
.+.+=|++..+.+|.+++.. +-.-.|=|.++|++|.|||.||++++.++.-.| +...
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~is-------- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSIS-------- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeec--------
Confidence 46788999999999888752 112346689999999999999999999875333 3211
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH------H-------HHHHhcccCCC------
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK------Q-------IEFLIGRIDWL------ 261 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~-------~~~l~~~~~~~------ 261 (966)
+-++.+.+.+ .+.+...+.+.+.-+..++++++|+++... | +..|+...+..
T Consensus 256 ----ApeivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 256 ----APEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----chhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 1112222221 122334444555567789999999996431 1 22333322211
Q ss_pred CCCcEEEE-EeCchhhhhcC----CcceeEeeccCChhhHHHHHhhhh
Q 046086 262 ASGSRIII-TTRDKHVLSNC----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 262 ~~gs~IIi-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
+.+.-||- |+|...+-... ..++.+.+.--+..+-.+++...+
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 23333333 44433322221 234566777666666666665544
No 222
>PHA00729 NTP-binding motif containing protein
Probab=96.89 E-value=0.0046 Score=63.15 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=23.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999764
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.84 E-value=0.0033 Score=60.75 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=64.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHH-----hCCC-CCCCCh-------
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL-----LNDR-NVKNSP------- 222 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-----~~~~-~~~~~~------- 222 (966)
.+|-|++..|-||||+|...+-+...+=-.+.++.-..... ..+-....+.+ ..+ .... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 46888888999999999999988766655566655443311 22333333333 000 0000 000111
Q ss_pred hhhHHHHHHHhcC-CcEEEEEecCCCh-----HHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 223 NIVLNFQSKRFTR-KKVLIVFDDVTHL-----KQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 223 ~~~~~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
....+..++.+.. .-=|||||++... -..+.+...+....++..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1223333444443 4459999998433 123333333333457789999999874
No 224
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.83 E-value=0.011 Score=63.16 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
++++...+..+ +-|.+.|++|+|||++|+.+++....
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 34444444332 34779999999999999999986543
No 225
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.02 Score=66.05 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=83.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..-|.|.|..|+|||+||+++++.+...- -++.++++. ......+..+++-+ ...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs--~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS--TLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech--hccchhHHHHHHHH-----------------HHHHHHHH
Confidence 34689999999999999999999876432 233333322 11222244444332 23444556
Q ss_pred cCCcEEEEEecCCChH--------H----HHHHhccc----C-CCCCCcE--EEEEeCchhhhhc-----CCcceeEeec
Q 046086 234 TRKKVLIVFDDVTHLK--------Q----IEFLIGRI----D-WLASGSR--IIITTRDKHVLSN-----CLVDQIYEVK 289 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~--------~----~~~l~~~~----~-~~~~gs~--IIiTTR~~~v~~~-----~~~~~~~~l~ 289 (966)
...+-+|||||++-.. | .+.+...+ . ....+.+ +|.|.....-... .....+..++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 7788999999985321 1 11111111 0 1123344 3444444332221 1233466788
Q ss_pred cCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCC-CchhHHhH
Q 046086 290 ELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKG-VPLALKVL 335 (966)
Q Consensus 290 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G-~PLal~~~ 335 (966)
.+...+-.++++... ...... ..++...-+..+|+| .|.-+.++
T Consensus 572 ap~~~~R~~IL~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 888877777765543 211111 112223336667766 34444443
No 226
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.80 E-value=0.013 Score=72.89 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=40.6
Q ss_pred CCccccccchHHHHHHhhhcC-------CCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 131 NKELVGVECPINEIESLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...++|.+..++.+.+.+... .....++.++|++|+|||.+|+.+++.+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 357899999999998887521 1123478999999999999999999876443
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.016 Score=64.57 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
.....+.+.|++|.|||+||..++.. ..|+.+-.++ ... .-++.+-+ ..........+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe~-miG~sEsa---------------Kc~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PED-MIGLSESA---------------KCAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hHH-ccCccHHH---------------HHHHHHHHHHHh
Confidence 34567889999999999999999864 5677443332 111 00110000 000112223344
Q ss_pred hcCCcEEEEEecCCChHH------------HHHHhcccCCC---CCCcEEEEEeCchhhhhcCCc----ceeEeeccCCh
Q 046086 233 FTRKKVLIVFDDVTHLKQ------------IEFLIGRIDWL---ASGSRIIITTRDKHVLSNCLV----DQIYEVKELLD 293 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~~------------~~~l~~~~~~~---~~gs~IIiTTR~~~v~~~~~~----~~~~~l~~L~~ 293 (966)
.+..=-.||+||++..-+ ++.|.-.+... +..--|+-||..+.++..++. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 455667899999966543 34443333222 223345568888888887753 35788999987
Q ss_pred -hhHHHHHhhh
Q 046086 294 -VDALKLFSRR 303 (966)
Q Consensus 294 -~ea~~Lf~~~ 303 (966)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777777654
No 228
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.78 E-value=0.01 Score=59.27 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=42.1
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
|....++||-+.-++.+.-.... .+.+-+.|.||+|+||||-+..+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 44556789999999988877654 4577899999999999999999998764
No 229
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.77 E-value=0.0069 Score=63.92 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=57.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC-----CCCC-hh------
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN-----VKNS-PN------ 223 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~~------ 223 (966)
..++|.|.+|.||||||+.++++.+.+|+..+++..+.+. ......+.+.+...-..... ..+. ..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999999998888878887766543 23344444544432111100 1111 11
Q ss_pred hhHHHHHHHh--c-CCcEEEEEecCCChHH
Q 046086 224 IVLNFQSKRF--T-RKKVLIVFDDVTHLKQ 250 (966)
Q Consensus 224 ~~~~~l~~~L--~-~k~~LlVLDdv~~~~~ 250 (966)
...-.+.+++ + ++.+|+|+||+....+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 1112233444 3 8899999999965443
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.76 E-value=0.017 Score=72.37 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCccccccchHHHHHHhhhcC------CCC-ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 131 NKELVGVECPINEIESLLRTG------SAG-VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...++|.+..++.+...+... ... ...+.++|++|+|||++|+.++..+...-...+.++
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 356899999999999888632 111 356889999999999999999987654433334443
No 231
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.76 E-value=0.049 Score=67.23 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.4
Q ss_pred CCccccccchHHHHHHhhhcC------CCC-ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 131 NKELVGVECPINEIESLLRTG------SAG-VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...++|.+..++.+...+... .+. ..++.++|++|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356899999999998887631 111 34678999999999999999999773
No 232
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0049 Score=62.84 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=64.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
.+|.|+|+.|.||||++..+...+.......++...-......... ..+. .......+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~----~~~i----~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK----RSLI----NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc----ccee----eecccCCCccCHHHHHHHHhcC
Confidence 4689999999999999999988776555444443211000000000 0000 0000111123445667777877
Q ss_pred CcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhh
Q 046086 236 KKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVL 277 (966)
Q Consensus 236 k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 277 (966)
.+=.+++|++.+.+.++...... ..|-.++.|+-.....
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 78899999998887766554432 2455677777655443
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.05 Score=59.32 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred CcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCC
Q 046086 236 KKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPN 311 (966)
Q Consensus 236 k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 311 (966)
++=++|+|+++.. .....|+..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... ..
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~- 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT- 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc-
Confidence 3447788998764 34666666666656778777776665 444432 234578999999999999886542 11
Q ss_pred ccHHHHHHHHHHHcCCCchhHHhH
Q 046086 312 ASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 312 ~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
.+..++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1356788999999866554
No 234
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.0067 Score=60.64 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=32.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+|.+.|+.|.||||+|+.++.++..++...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458999999999999999999999988887777774
No 235
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.70 E-value=0.00016 Score=65.94 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=24.4
Q ss_pred cccEEeecccccccccccccC-CCCCCEEeccCCCCcccccccccCCCCCcEEEccC
Q 046086 659 HIHFLDLYECGIEDMPLSIEC-LSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISS 714 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~-l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~ 714 (966)
.|+..+|++|.++.+|..+.. ++.++.|+|++|++ ..+|..+..++.|+.|+++.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhccccc
Confidence 344455555555555444332 23444444444432 23333444444444444444
No 236
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.70 E-value=0.0054 Score=64.10 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN 191 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 191 (966)
..|.++|..+-..-.++.|+|.+|.|||++|.+++......-..++|++.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45666665554566799999999999999999999877666677888873
No 237
>PRK08118 topology modulation protein; Reviewed
Probab=96.66 E-value=0.0013 Score=65.01 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=25.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc---cCCceEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR---HFEGSYF 188 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 188 (966)
.|.|+|++|+||||||+.+++++.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997643 3555554
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.65 E-value=0.0049 Score=63.63 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=36.6
Q ss_pred HhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe
Q 046086 146 SLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN 191 (966)
Q Consensus 146 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 191 (966)
++|..+-+.-+++.|+|.+|.|||++|.+++......-..++|++.
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3444444556899999999999999999999877666678889873
No 239
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.65 E-value=0.0017 Score=62.21 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 240
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.64 E-value=0.015 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=27.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766555666665
No 241
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0044 Score=62.71 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=62.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--CCCChhhhHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--VKNSPNIVLNFQSKRF 233 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~~l~~~L 233 (966)
.++.|+|..|.||||+|..++.+...+...++++.- ....+.+...+ .+.+..... ......+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGKV----VSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCcE----ecCCCCcccceEeCChHHHHHHHHh-h
Confidence 467899999999999999999988666544444421 00111111112 222211100 11223344444444 3
Q ss_pred cCCcEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 234 TRKKVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 234 ~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 33556899999854 344555544322 47889999999854
No 242
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.63 E-value=0.0072 Score=62.80 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+..|..+|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566677555456789999999999999999999987765555677775
No 243
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.63 E-value=0.031 Score=69.75 Aligned_cols=119 Identities=14% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCccccccchHHHHHHhhhcC------CC-CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHH
Q 046086 131 NKELVGVECPINEIESLLRTG------SA-GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 203 (966)
...++|.+..++.+...+... .+ ....+.++|+.|+|||+||+.+++.+...-...+.++ ..+....+....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH
Confidence 356899999999998877521 11 1345678999999999999999987643323333332 222222222211
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCc-EEEEEecCCCh--HHHHHHhcccC
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKK-VLIVFDDVTHL--KQIEFLIGRID 259 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~--~~~~~l~~~~~ 259 (966)
+ . +....... . .....+.+.++.++ -+++||+++.. +.+..|+..+.
T Consensus 587 l----~---g~~~gyvg-~-~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 L----I---GSPPGYVG-Y-NEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred h----c---CCCCcccC-c-CccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 1 11111110 0 01123344444454 58889999653 34555555443
No 244
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.63 E-value=0.032 Score=67.52 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=85.7
Q ss_pred CccccccchHHHHHHhhhcC----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCH
Q 046086 132 KELVGVECPINEIESLLRTG----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGL 201 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 201 (966)
..+.|.+...+++.+.+... ..-.+-|.|+|++|.|||++|+.++.+....| +.+. ..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~-------- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GS-------- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hH--------
Confidence 34667776666666554311 11123489999999999999999998765443 1121 10
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCCC--C
Q 046086 202 AHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWLA--S 263 (966)
Q Consensus 202 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 263 (966)
.+.... .. .........+.......+.+|++|+++... .+..++..++.+. .
T Consensus 220 -~~~~~~----~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 220 -DFVEMF----VG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred -HhHHhh----hc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 011000 00 011122223333334567899999986541 1233433333322 3
Q ss_pred CcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcC
Q 046086 264 GSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFG 306 (966)
Q Consensus 264 gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 306 (966)
+.-+|.||...+.+.. -..+..+.++..+.++-.+++..+.-.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 4445557776654332 134567889988988888888877643
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.61 E-value=0.0016 Score=70.96 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=41.0
Q ss_pred ccccccchHHHHHHhhhcC----CCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 133 ELVGVECPINEIESLLRTG----SAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++|+++.++++.+++... ....++++++|++|.||||||+.+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999988642 23467899999999999999999998764
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0017 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 247
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.017 Score=64.20 Aligned_cols=49 Identities=24% Similarity=0.161 Sum_probs=38.1
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 133 ELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.++|-+....++..+..........+.++|++|+||||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4577777888888887643333445999999999999999999997753
No 248
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.60 E-value=0.057 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 249
>PRK07261 topology modulation protein; Provisional
Probab=96.60 E-value=0.0066 Score=60.26 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 250
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.59 E-value=0.0084 Score=65.81 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCC
Q 046086 143 EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNS 221 (966)
Q Consensus 143 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 221 (966)
++...+..-..+ ..++|+|.+|.|||||++.+++.+..+. +..+++..+.+ ......++.+.+...+.........
T Consensus 122 RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 344444322223 3569999999999999999999876654 33334433432 3445667777776654432211111
Q ss_pred hh--h---hHHHHHHHh--cCCcEEEEEecCCChH
Q 046086 222 PN--I---VLNFQSKRF--TRKKVLIVFDDVTHLK 249 (966)
Q Consensus 222 ~~--~---~~~~l~~~L--~~k~~LlVLDdv~~~~ 249 (966)
.. . ....+.+++ .+++++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 11 0 111111222 5899999999996543
No 251
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.58 E-value=0.014 Score=60.94 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEe
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHN 191 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 191 (966)
..|.++|..+-..-.++.|.|.+|.|||++|..++....... ..++|++.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 455666655555677999999999999999999987655444 56778763
No 252
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.57 E-value=0.01 Score=60.01 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=59.1
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh--hccCCceEEEEeehhhhccCC--HHHHHHHH----
Q 046086 137 VECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT--SRHFEGSYFAHNVQEAQENGG--LAHLRQQL---- 208 (966)
Q Consensus 137 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~~~~~~--~~~l~~~l---- 208 (966)
+..+.....+.|. +..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+..+.-+ .-.+.+++
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444455555554 34589999999999999999888642 467787777654332211111 01111111
Q ss_pred ---HHHHhCCCCCCCChhhhHHHHH---------HHhcCC---cEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEEe
Q 046086 209 ---LSTLLNDRNVKNSPNIVLNFQS---------KRFTRK---KVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIITT 271 (966)
Q Consensus 209 ---l~~l~~~~~~~~~~~~~~~~l~---------~~L~~k---~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTT 271 (966)
...+..-. ... .....+. ..++++ ..+||+|++.+ ..++..++.. .+.||+||++-
T Consensus 81 ~p~~d~l~~~~-~~~---~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF-GKE---KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS--TT---CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE
T ss_pred HHHHHHHHHHh-ChH---hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEec
Confidence 11111100 001 1111111 123443 46899999955 4578777654 37999999987
Q ss_pred Cchh
Q 046086 272 RDKH 275 (966)
Q Consensus 272 R~~~ 275 (966)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 6543
No 253
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.096 Score=57.28 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+++=++|+|+++.. .....|+..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+..... ..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~~ 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---AE 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---cC
Confidence 44457789999764 34666666666666788888777765 444332 2346889999999999998887641 11
Q ss_pred CccHHHHHHHHHHHcCCCchh
Q 046086 311 NASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLa 331 (966)
. ..+..++..++|.|+.
T Consensus 183 ~----~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 183 I----SEILTALRINYGRPLL 199 (325)
T ss_pred h----HHHHHHHHHcCCCHHH
Confidence 1 1256678899999963
No 254
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.12 Score=57.04 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred CCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hhhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HVLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+++=++|+|+++.. +....|+..+....+++.+|++|.+. .++... .....+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 34447788999764 44666776666667788776666654 444332 234688999999999999987652 11
Q ss_pred CccHHHHHHHHHHHcCCCchhHHhH
Q 046086 311 NASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
. ...++..++|.|+....+
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h------HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999644433
No 255
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.04 Score=60.82 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCC
Q 046086 235 RKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDP 310 (966)
Q Consensus 235 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 310 (966)
+++=++|+|+++.. +....|+..+....+++.+|++|.+.+ ++... .....+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--M- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--C-
Confidence 44557888998764 345666666666567887777777653 44332 223578899999999998886542 1 1
Q ss_pred CccHHHHHHHHHHHcCCCchhH
Q 046086 311 NASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 311 ~~~~~~~~~~iv~~~~G~PLal 332 (966)
+ .+.+..++..++|.|...
T Consensus 183 ~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHH
Confidence 1 123677899999999643
No 256
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.52 E-value=0.019 Score=56.40 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc--------------------CCceEEEEeehhh
Q 046086 136 GVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--------------------FEGSYFAHNVQEA 195 (966)
Q Consensus 136 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~~~~~~~~~ 195 (966)
|-+...+.|...+..+ .-...+.++|..|+||+|+|+.+++.+-.. .....|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4556667777777543 234568999999999999999999865321 2222333210 00
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCc
Q 046086 196 QENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRD 273 (966)
Q Consensus 196 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~ 273 (966)
...-....+. ++...+.... ..+++=++|+||++.. +....|+..+.....++++|++|++
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0011122221 2222111110 1234457889999764 4466676666666788999999988
Q ss_pred hhh-hhcC-CcceeEeeccC
Q 046086 274 KHV-LSNC-LVDQIYEVKEL 291 (966)
Q Consensus 274 ~~v-~~~~-~~~~~~~l~~L 291 (966)
..- .... .....+.+.++
T Consensus 142 ~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGGS-HHHHTTSEEEEE---
T ss_pred hHHChHHHHhhceEEecCCC
Confidence 743 2221 22345555554
No 257
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.50 E-value=0.012 Score=61.77 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+..|.++|..+-+.-.++.|+|.+|.|||++|.+++.....+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 35566677655566789999999999999999999765444456677776
No 258
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.071 Score=61.32 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=106.8
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc----CCc--eEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH----FEG--SYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~--~~~~~~~~~~~~~~~~~ 202 (966)
...+++||-+...+.|...+..+. -..-....|+-|+||||+||.++.-+.-. .+. .|..+ ++.... ...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~ 88 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLI 88 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccc
Confidence 345678999999999999987542 23346689999999999999999854211 111 11110 111111 000
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHh----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhh
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHV 276 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v 276 (966)
++.+ + +......+++..+.+.+.. .++.=+.|+|.|... ..+..|+..+....+....|+.|.+.+-
T Consensus 89 DviE-----i--DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 89 DVIE-----I--DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred cchh-----h--hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 1100 0 0001111222222222211 334447888999664 4688888877766677777777776642
Q ss_pred h-hc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 277 L-SN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 277 ~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
. .. ......|.++.++.++-...+...+-...... ..+....|++..+|-.
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 2 22 23346899999999988888877764333222 2344556666666643
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.47 E-value=0.067 Score=60.40 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+|.++|.+|+||||+|..++..++.+-..+..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3579999999999999999999987765433444443
No 260
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.45 E-value=0.038 Score=58.54 Aligned_cols=144 Identities=19% Similarity=0.145 Sum_probs=83.8
Q ss_pred CCCccccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh--ccCCHHHHH
Q 046086 130 DNKELVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ--ENGGLAHLR 205 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--~~~~~~~l~ 205 (966)
+.-.++|-.++..++.+++... -.+..-|.|+|+.|.|||+|......+ .+.|.....+....... .+-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4567999999999999988631 122345889999999999998877666 33444443433222211 222344555
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhc------CCcEEEEEecCCChH----H--HHHHhccc-CCCCCCcEEEEEeC
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFT------RKKVLIVFDDVTHLK----Q--IEFLIGRI-DWLASGSRIIITTR 272 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~------~k~~LlVLDdv~~~~----~--~~~l~~~~-~~~~~gs~IIiTTR 272 (966)
.++..++........+..+....+-..|+ +.+++.|+|.+|-.. | +-.+.... ....|=+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 56555554443334444454555555543 346899999886532 2 22222211 12246667778998
Q ss_pred ch
Q 046086 273 DK 274 (966)
Q Consensus 273 ~~ 274 (966)
-.
T Consensus 181 ld 182 (408)
T KOG2228|consen 181 LD 182 (408)
T ss_pred cc
Confidence 54
No 261
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.022 Score=63.56 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCccccccchHHHHHHhhh---cC-------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 131 NKELVGVECPINEIESLLR---TG-------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
.+++-|.|+..++|++... .. ..=.+=|.++|++|.|||-||++++-+..-.| |....++..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSEFd---- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSEFD---- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccchh----
Confidence 3567788877766665543 21 12245689999999999999999997643222 222111110
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCCCCCCcEE
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDWLASGSRI 267 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~I 267 (966)
+++- ........+.....-...+++|.+|.+|... .+..|+..++.|.+..-|
T Consensus 375 ------Em~V--------GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 375 ------EMFV--------GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred ------hhhh--------cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 0000 0001122223333345678999999985432 266677777766655444
Q ss_pred EE--EeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhh
Q 046086 268 II--TTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 268 Ii--TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
|| .|.-++.+.. -..+..+.|+.-+..--.++|..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 33 4444433322 1234556666666555556665554
No 262
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.44 E-value=0.0029 Score=60.43 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=32.6
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
||....++++.+.+..-......|.|+|..|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777777776653223445689999999999999999887543
No 263
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0017 Score=66.39 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=50.0
Q ss_pred cCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCC--CCCccccccccCCCCCCCccEEEcCCCCccccc--hHhhc
Q 046086 678 ECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSC--SNLKRFPEISSSCNREGSTEVLHLKGNNLERIP--ESIRH 753 (966)
Q Consensus 678 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~--~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~i~~ 753 (966)
..+..|+.|++.++.++.. ..+-.||+|+.|.+|.| .....++.....+ ++|++|+|++|++..+. ..+..
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~---P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA---PNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhC---CceeEEeecCCccccccccchhhh
Confidence 3345555555555544322 12334677777777776 3333343333333 37788888888776322 14567
Q ss_pred CCCCCEEeecCCCCc
Q 046086 754 LSKLKSLDISYCEWL 768 (966)
Q Consensus 754 l~~L~~L~L~~n~~l 768 (966)
+.+|..|++.+|.-+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 778888888888643
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.43 E-value=0.072 Score=59.14 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=36.3
Q ss_pred cchHHHHHHhhhcCC-CCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 138 ECPINEIESLLRTGS-AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 138 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
+...+.|.+.+.... ....+|||.|.=|.||||+.+.+.+++...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 567899999999999999999999988776
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0032 Score=59.41 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=29.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc-CCce-EEEEeeh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGS-YFAHNVQ 193 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~ 193 (966)
--|+|.||+|+||||+++.+++.++.. |... +|..-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 358999999999999999999988766 6433 4444444
No 266
>PRK04132 replication factor C small subunit; Provisional
Probab=96.37 E-value=0.059 Score=65.94 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=89.8
Q ss_pred ee--cCCCchhHHHHHHHHHhhc-cCCc-eEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCC
Q 046086 161 WG--IGGIGKTTIAGAVFNKTSR-HFEG-SYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRK 236 (966)
Q Consensus 161 ~G--~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k 236 (966)
.| +.|+||||+|.++++++-. .+.. .+.+. . +...+...+.+.+ ......... -..+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN-A---Sd~rgid~IR~iI-k~~a~~~~~--------------~~~~ 630 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN-A---SDERGINVIREKV-KEFARTKPI--------------GGAS 630 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe-C---CCcccHHHHHHHH-HHHHhcCCc--------------CCCC
Confidence 47 7899999999999998632 2322 23333 2 2223444333222 222111100 0123
Q ss_pred cEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCc
Q 046086 237 KVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNA 312 (966)
Q Consensus 237 ~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 312 (966)
.-++|+|+++... +...|+..+.......++|+++.+.. +.... .....+.+++++.++-.+.+...+-.....-
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i- 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL- 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-
Confidence 4699999998753 56667666665566778877776653 32221 2346889999999988887776553222111
Q ss_pred cHHHHHHHHHHHcCCCchhH
Q 046086 313 SYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 313 ~~~~~~~~iv~~~~G~PLal 332 (966)
..+....|++.++|.+...
T Consensus 710 -~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 1356789999999988443
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.36 E-value=0.079 Score=61.58 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=98.8
Q ss_pred CCCccccccchHHHHHHhhhc--CC-CCceEEEEeecCCCchhHHHHHHHHHhh--------ccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT--GS-AGVCKLGIWGIGGIGKTTIAGAVFNKTS--------RHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~~~~ 198 (966)
.+..+-+||.+..+|...+.. .. ...+.+.|.|-+|.|||+.+..|.+.+. ..|+. +.+... .-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm----~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGL----RL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcce----ee
Confidence 456788999999999998863 22 3345899999999999999999998554 23332 233322 22
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc-----CCcEEEEEecCCChHH--HHHHhcccCCC-CCCcEEEEE
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT-----RKKVLIVFDDVTHLKQ--IEFLIGRIDWL-ASGSRIIIT 270 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IIiT 270 (966)
....++...|+..+.+.. .......+.+..+.. .++.+|++|+++..-. -+-+-..++|. .++|+++|-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred cCHHHHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 346677777777776553 233345555555553 4568888898865422 12222334454 477887665
Q ss_pred eCch--hhhhcC--------CcceeEeeccCChhhHHHHHhhhh
Q 046086 271 TRDK--HVLSNC--------LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 271 TR~~--~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
+=.. ...... -....+...+-+.++-.+....+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 4322 111100 011345556666666665555544
No 268
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.087 Score=53.20 Aligned_cols=145 Identities=20% Similarity=0.287 Sum_probs=85.3
Q ss_pred cc-cccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCH
Q 046086 134 LV-GVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGL 201 (966)
Q Consensus 134 ~v-Gr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 201 (966)
.| |.+..+++|.+.+... -.+.+-|.++|++|.|||-||+++|+.- .+.|+. ++. .
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg------s 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG------S 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech------H
Confidence 44 4577888887766532 1345668899999999999999999753 344443 322 1
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhhHHHHHH----HhcCCcEEEEEecCCChH--------------H--HHHHhcccCCC
Q 046086 202 AHLRQQLLSTLLNDRNVKNSPNIVLNFQSK----RFTRKKVLIVFDDVTHLK--------------Q--IEFLIGRIDWL 261 (966)
Q Consensus 202 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVLDdv~~~~--------------~--~~~l~~~~~~~ 261 (966)
.+.++... ++...+++ .-...+..|..|.++... | .-+++..++.|
T Consensus 216 -elvqk~ig-------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 216 -ELVQKYIG-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred -HHHHHHhh-------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 12222211 11111221 113457788888875431 1 22344444444
Q ss_pred --CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhh
Q 046086 262 --ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 262 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
...-+||++|..-+++.. -..+..++.++.+.+.-.+++.-+.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 355688888876655443 2456678888888777777776554
No 269
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.35 E-value=0.016 Score=55.71 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=56.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
-.+++|.|..|.|||||++.++.... ...+.+++.......-... ....+...-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 45899999999999999999987543 2355555532100000000 1111122333455566
Q ss_pred CCcEEEEEecCC---ChH---HHHHHhcccCCCCCCcEEEEEeCchhhhhc
Q 046086 235 RKKVLIVFDDVT---HLK---QIEFLIGRIDWLASGSRIIITTRDKHVLSN 279 (966)
Q Consensus 235 ~k~~LlVLDdv~---~~~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 279 (966)
.++-++++|+-. +.. .+..+...+ +..||++|.+......
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~ 132 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQ 132 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHH
Confidence 677799999863 222 233333322 2468888887765543
No 270
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.33 E-value=0.023 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 271
>PRK07667 uridine kinase; Provisional
Probab=96.31 E-value=0.0079 Score=61.06 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
++.+.+.+.....+..+|||.|.+|.||||+|+.+.+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665444566899999999999999999999987654
No 272
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0062 Score=63.48 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=35.1
Q ss_pred ccchHHHHHHhhhc-CCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 137 VECPINEIESLLRT-GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 137 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45556666666542 33567899999999999999999999987644
No 273
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.27 E-value=0.029 Score=56.31 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=62.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH------HHHHHHHHhCC-----CC-CCCCh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL------RQQLLSTLLND-----RN-VKNSP 222 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l------~~~ll~~l~~~-----~~-~~~~~ 222 (966)
-.+++|.|..|.|||||++.++-... ...+.+++.... .. ....... .-+++..+.-. .. ....-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 45899999999999999999987543 345666654211 00 0011111 11122222111 11 11122
Q ss_pred hhhHHHHHHHhcCCcEEEEEecCCC---hHH---HHHHhcccCCCCCCcEEEEEeCchhhhh
Q 046086 223 NIVLNFQSKRFTRKKVLIVFDDVTH---LKQ---IEFLIGRIDWLASGSRIIITTRDKHVLS 278 (966)
Q Consensus 223 ~~~~~~l~~~L~~k~~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IIiTTR~~~v~~ 278 (966)
+...-.+.+.+...+-++++|+-.. ... +..++..+.. ..|..||++|.+.....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 2233345566667888999998632 222 3233322211 12678888888876543
No 274
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.15 Score=55.99 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=48.5
Q ss_pred CcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCC
Q 046086 236 KKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPN 311 (966)
Q Consensus 236 k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 311 (966)
.|+ +|+|+++.. .....++..+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... . .
T Consensus 114 ~kV-~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 114 LRV-ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred ceE-EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 444 456887654 333344433333345677777777764 33221 223578899999999998886542 1 1
Q ss_pred ccHHHHHHHHHHHcCCCchh
Q 046086 312 ASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 312 ~~~~~~~~~iv~~~~G~PLa 331 (966)
.. ...+..++|-|+.
T Consensus 188 ~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-----EERLAFHSGAPLF 202 (325)
T ss_pred cH-----HHHHHHhCCChhh
Confidence 11 1123568898854
No 275
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0035 Score=64.11 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=66.0
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCC--CCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEE
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNC--TRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVL 737 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n--~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L 737 (966)
|+.|++.+..++++. .+-.|++|++|.++.| ...+.++.....+|+|++|++++|..-. +..+..+..+.+|..|
T Consensus 45 le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 45 LELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence 555555555554332 2445778888888888 5566666666667888888888865422 4444445555688888
Q ss_pred EcCCCCccccch----HhhcCCCCCEEeecCCC
Q 046086 738 HLKGNNLERIPE----SIRHLSKLKSLDISYCE 766 (966)
Q Consensus 738 ~Ls~n~l~~lp~----~i~~l~~L~~L~L~~n~ 766 (966)
++.+|.-+.+-. -+.-+++|++|+-....
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 888886664432 23456777777655443
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=96.23 E-value=0.14 Score=58.19 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=25.2
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999999998877655
No 277
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.21 E-value=0.038 Score=67.47 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=39.7
Q ss_pred CCccccccchHHHHHHhhhcC-------CCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 131 NKELVGVECPINEIESLLRTG-------SAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...++|.+..++.|.+.+... ......+.++|++|+|||++|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999998887621 11234688999999999999999998774
No 278
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.018 Score=56.63 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=25.9
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSY 187 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 187 (966)
+.|.+.|.+|+||||+|++++..+++.-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46789999999999999999998776544333
No 279
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.21 E-value=0.024 Score=66.93 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=39.1
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44567999999999998876542 33457899999999999999998753
No 280
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.20 E-value=0.032 Score=58.67 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+..|.++|..+-+.-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 35566777666566789999999999999999998765445566778876
No 281
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.18 E-value=0.022 Score=56.17 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=33.0
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+||.+..+.++.+.+..-.....-|.|+|..|.||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888887776322223457799999999999999998843
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.14 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=22.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999755
No 283
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.13 E-value=0.016 Score=62.87 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH---HHHHhCCC
Q 046086 141 INEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL---LSTLLNDR 216 (966)
Q Consensus 141 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l---l~~l~~~~ 216 (966)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++.-..... ..++++ +..+.-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~- 113 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP-----VYAKKLGVDLDNLLIS- 113 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH-----HHHHHcCCCHHHheec-
Confidence 355666675 444667899999999999999999998877666667888873222111 111111 1111111
Q ss_pred CCCCChhhhHHHHHHHhc-CCcEEEEEecCC
Q 046086 217 NVKNSPNIVLNFQSKRFT-RKKVLIVFDDVT 246 (966)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 246 (966)
...+.++....+....+ +..-+||+|.|.
T Consensus 114 -~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 -QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred -CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 22334445555544443 456689999873
No 284
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.11 E-value=0.0098 Score=58.78 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=43.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCC---CCChhhhHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNV---KNSPNIVLNFQSKRF 233 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~~~~~l~~~L 233 (966)
++.|.|.+|.||||+|..++.+... ...|+.. ....-.+..+.+.......... ......+...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat-----~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIAT-----AQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcC-----CCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 5899999999999999999876532 2344431 1122334555554333322221 112223344444333
Q ss_pred cCCcEEEEEecC
Q 046086 234 TRKKVLIVFDDV 245 (966)
Q Consensus 234 ~~k~~LlVLDdv 245 (966)
.+. -++++|.+
T Consensus 75 ~~~-~~VlID~L 85 (170)
T PRK05800 75 APG-RCVLVDCL 85 (170)
T ss_pred CCC-CEEEehhH
Confidence 332 37888986
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.11 E-value=0.0098 Score=60.27 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.+++.++|+.|+||||.+.+++.++..+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999887776644455554
No 286
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.035 Score=65.45 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 132 KELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4556666666666655431 123456799999999999999999999765554221110
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-------------HHHHHHhcccCCCCCCc--
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-------------KQIEFLIGRIDWLASGS-- 265 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~~~~gs-- 265 (966)
.+ ++... ..........+....+..+..|.+|+++.. .....++..++.....+
T Consensus 311 --~l----~sk~v-----Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 --EL----LSKWV-----GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred --HH----hcccc-----chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 11 11100 111112233344444678899999998532 22344444443333333
Q ss_pred EEEEEeCchhhhhcC-----CcceeEeeccCChhhHHHHHhhhhcC
Q 046086 266 RIIITTRDKHVLSNC-----LVDQIYEVKELLDVDALKLFSRRAFG 306 (966)
Q Consensus 266 ~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 306 (966)
.||-||-.+...... .-+..+.++.-+.++..+.|..+.-.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 345555555433321 34568899999999999999998853
No 287
>PRK06762 hypothetical protein; Provisional
Probab=96.10 E-value=0.029 Score=55.40 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=22.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
++|.|.|++|+||||+|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 288
>PRK09354 recA recombinase A; Provisional
Probab=96.05 E-value=0.018 Score=63.02 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH---HHHHhCCC
Q 046086 141 INEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL---LSTLLNDR 216 (966)
Q Consensus 141 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l---l~~l~~~~ 216 (966)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++.-..... ..++.+ +..+...
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~- 118 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVS- 118 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEe-
Confidence 456667776 455667899999999999999999998877666677888873322211 112221 1111111
Q ss_pred CCCCChhhhHHHHHHHhc-CCcEEEEEecCC
Q 046086 217 NVKNSPNIVLNFQSKRFT-RKKVLIVFDDVT 246 (966)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 246 (966)
.....++....+....+ +..-+||+|.|.
T Consensus 119 -qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 -QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred -cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 22334455555554443 456689999984
No 289
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.04 E-value=0.22 Score=58.29 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=37.3
Q ss_pred HHHHHHhcCCcEEEEEecC------CChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeecc
Q 046086 227 NFQSKRFTRKKVLIVFDDV------THLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKE 290 (966)
Q Consensus 227 ~~l~~~L~~k~~LlVLDdv------~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~ 290 (966)
-.+...+..++=+||||.= +..+.++..+..+ + ..||+.|-|+....... .+++.+++
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~-Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----E-GTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----C-CeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 3444555678889999964 3444555555442 2 35888889998877644 45666664
No 290
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.14 Score=52.94 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=117.1
Q ss_pred CCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEEeehh---------
Q 046086 130 DNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAHNVQE--------- 194 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~--------- 194 (966)
..+.+.++++.-.++.++.. ..+.+-..++|+.|.||-|.+..+.+++-+ +-+...|......
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34457777777777777765 245778899999999999999999886532 1223333321111
Q ss_pred h-------hcc-CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcE-EEEEecCCCh--HHHHHHhcccCCCCC
Q 046086 195 A-------QEN-GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKV-LIVFDDVTHL--KQIEFLIGRIDWLAS 263 (966)
Q Consensus 195 ~-------~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~--~~~~~l~~~~~~~~~ 263 (966)
. +.. ..-+.+.++++.++........ -.++.+ ++|+-.++.. +.-.+|.........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 0 000 1112344555554443321100 012233 5566666543 333445444444457
Q ss_pred CcEEEEEeCch-hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhHhhhhc
Q 046086 264 GSRIIITTRDK-HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVLGSFLF 340 (966)
Q Consensus 264 gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~g~~L~ 340 (966)
.+|+|+.-.+. .+... -...-.+.++..+++|-...++..+-+....-+ .+++++|+++++|+-- ||-++ ...+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~ 233 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVR 233 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHH
Confidence 78887643222 11111 112235789999999999999888754443222 5789999999999753 33222 1111
Q ss_pred --C---------CCHHHHHHHHHHHh
Q 046086 341 --G---------RRKEEWKSAMKKME 355 (966)
Q Consensus 341 --~---------~~~~~w~~~l~~l~ 355 (966)
+ ....+|+-.++...
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHH
Confidence 1 23568998887654
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.99 E-value=0.021 Score=63.86 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45666777544445678999999999999999999988776555677775
No 292
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.99 E-value=0.017 Score=56.95 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=24.0
Q ss_pred EEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.|.|.+|.|||++|.+++.. .....+|+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 679999999999999999865 234566765
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.98 E-value=0.16 Score=58.13 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=27.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh--ccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS--RHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 190 (966)
.+++.++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3334555554
No 294
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.98 E-value=0.043 Score=60.04 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...+++++|++|+||||++..++..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887654
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.97 E-value=0.039 Score=54.46 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=63.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe---ehhhhccCCH--HHHHHHHHHHHhCCCCCCCChhhhHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN---VQEAQENGGL--AHLRQQLLSTLLNDRNVKNSPNIVLNFQ 229 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~--~~l~~~ll~~l~~~~~~~~~~~~~~~~l 229 (966)
-.+++|+|..|.|||||++.++-.... ..+.+++.. +.-..+...+ ..+.+.+... .......-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 457999999999999999999875432 233333321 0000111111 1222222110 111222223333445
Q ss_pred HHHhcCCcEEEEEecCCC---hH---HHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 230 SKRFTRKKVLIVFDDVTH---LK---QIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 230 ~~~L~~k~~LlVLDdv~~---~~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
.+.+..++=++++|+-.. .. .+..+.... +..||++|.+..... ..++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEE
Confidence 566667777889998522 22 233333321 356888888776543 24455544
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.085 Score=53.76 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEee
Q 046086 132 KELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNV 192 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 192 (966)
.++=|-.++++++.+.... +-+..+-|.++|++|.|||-+|++|+++- ..||+..+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 3455677777877765542 12334568899999999999999999985 34666644
No 297
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.96 E-value=0.025 Score=56.17 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=64.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHH--HH--HhCC-CCCC-------CC
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLL--ST--LLND-RNVK-------NS 221 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll--~~--l~~~-~~~~-------~~ 221 (966)
....|.|+|..|-||||.|..++-+...+=-.+.++.-..... ..+-....+.+- .- .... .... ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 3467999999999999999999887665544455544333221 122222222210 00 0000 0000 11
Q ss_pred hhhhHHHHHHHhcC-CcEEEEEecCCChH-----HHHHHhcccCCCCCCcEEEEEeCch
Q 046086 222 PNIVLNFQSKRFTR-KKVLIVFDDVTHLK-----QIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 222 ~~~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
.....+..++.+.. +-=|||||.+...- ..+.+...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11233444455544 44599999984322 2333333333345778999999987
No 298
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.19 Score=51.15 Aligned_cols=164 Identities=17% Similarity=0.252 Sum_probs=90.1
Q ss_pred CCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
..++=|.++.++++.+.+... -...+-|..+|++|.|||-+|++.+.+-...|-.- .
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------A 237 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------A 237 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh------------c
Confidence 345667777777776655321 12244588999999999999999988765544110 0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh----cCCcEEEEEecCCChH--------------H--HHHHhcccC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF----TRKKVLIVFDDVTHLK--------------Q--IEFLIGRID 259 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~--------------~--~~~l~~~~~ 259 (966)
+. ++. ++.. .++...+++.. ...+..|.+|.++... | .-.++..++
T Consensus 238 gP-QLV-----QMfI--------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 238 GP-QLV-----QMFI--------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred ch-HHH-----hhhh--------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 00 111 1110 11222222222 3467888889874321 1 233555666
Q ss_pred CCCCCc--EEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCC-CCCccHHHHHHH
Q 046086 260 WLASGS--RIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGED-DPNASYKELTQE 320 (966)
Q Consensus 260 ~~~~gs--~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~ 320 (966)
.|.+.- +||-.|..-.++. .-.-++.++.+..+.+.-.++++-++-+-. .+.-+++++++.
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 665554 5566555444432 223456677776666666666666654432 345567776654
No 299
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.061 Score=53.84 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=64.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCC------------CCCCCCh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLND------------RNVKNSP 222 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~------------~~~~~~~ 222 (966)
-.+++|.|..|.|||||++.++-... ...+.+++.... .... .....+.+ .-+... .......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~~--~~~~~~~i-~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVP-VSDL--EKALSSLI-SVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEE-HHHH--HHHHHhhE-EEEccCCeeecccHHHhhcccCCHH
Confidence 35799999999999999999987543 234555543210 0000 00000000 000000 0011111
Q ss_pred hhhHHHHHHHhcCCcEEEEEecCCCh---H---HHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeec
Q 046086 223 NIVLNFQSKRFTRKKVLIVFDDVTHL---K---QIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVK 289 (966)
Q Consensus 223 ~~~~~~l~~~L~~k~~LlVLDdv~~~---~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (966)
+...-.+.+.+-.++=++++|+.... . .+..++..+ ..+..||++|.+...... .++++.+.
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 22233455556677789999987332 2 222333322 246788888888876643 45555543
No 300
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.93 E-value=0.043 Score=57.74 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc------CCceEEEEe
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH------FEGSYFAHN 191 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~ 191 (966)
..|.++|..+-..-.++.|+|.+|.|||++|.+++...... -..++|++.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 34555665554556789999999999999999997543222 367788863
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.89 E-value=0.025 Score=58.77 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=70.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe--ehhhhccCCHHHHHHHHHHHHhCCCC-------CCCChhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN--VQEAQENGGLAHLRQQLLSTLLNDRN-------VKNSPNI 224 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~-------~~~~~~~ 224 (966)
.-.++||+|..|.||||+++.+..-..... +.+++.. +.... .........+++..+..... +...-+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 345899999999999999999987554333 3444431 11111 12223334445554432211 2222233
Q ss_pred hHHHHHHHhcCCcEEEEEecCCC------hHHHHHHhcccCCCCCCcEEEEEeCchhhhhcC
Q 046086 225 VLNFQSKRFTRKKVLIVFDDVTH------LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNC 280 (966)
Q Consensus 225 ~~~~l~~~L~~k~~LlVLDdv~~------~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 280 (966)
..-.+.+.|.-++-++|.|.--. ..|+-.++..+. ...|-..+..|-|-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 34457778888999999998522 234444443332 13466677777777666553
No 302
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.89 E-value=0.023 Score=61.71 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHH---HHHHhCCC
Q 046086 141 INEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQL---LSTLLNDR 216 (966)
Q Consensus 141 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l---l~~l~~~~ 216 (966)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++.-..... ..++++ +..+...
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~-----~~a~~lGvd~~~l~v~- 113 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP-----VYARKLGVDIDNLLVS- 113 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH-----HHHHHcCCCHHHeEEe-
Confidence 355666665 455667899999999999999999998877666566778863221111 111111 0111111
Q ss_pred CCCCChhhhHHHHHHHhc-CCcEEEEEecCC
Q 046086 217 NVKNSPNIVLNFQSKRFT-RKKVLIVFDDVT 246 (966)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 246 (966)
.....++....+....+ +..-+||+|.|.
T Consensus 114 -~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 114 -QPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred -cCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 22334444555544443 456689999974
No 303
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.88 E-value=0.04 Score=57.58 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 143 EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 143 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.+.+.+..+-+...++.|.|.+|.||||+|.+++.....+-..++|+.
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334444333344568999999999999999877765533335566665
No 304
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.88 E-value=0.046 Score=52.86 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.87 E-value=0.012 Score=56.69 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.+|.|.|.+|.||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57999999999999999999999988877777775
No 306
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.049 Score=65.25 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=88.1
Q ss_pred CCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-C-----CceEEEEeehhhhccCCHHH
Q 046086 130 DNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-F-----EGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~~~~~~~~~~~~~~~~~~~~ 203 (966)
..+.++||+.++.++.+.|.....+- -.++|.+|+|||++|.-++.++... - +..++--++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g---------- 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG---------- 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH----------
Confidence 34679999999999999997543222 3468999999999999999986532 1 1222222111
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHHHh-cCCcEEEEEecCCCh-----------HHHHHHhcccCCCCCC-cEEEE-
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTHL-----------KQIEFLIGRIDWLASG-SRIII- 269 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~g-s~IIi- 269 (966)
.+........+.++....+.+.+ +..++.|.+|.+... +.-..|.+.+ ..| -++|-
T Consensus 236 -------~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---ARGeL~~IGA 305 (786)
T COG0542 236 -------SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---ARGELRCIGA 305 (786)
T ss_pred -------HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---hcCCeEEEEe
Confidence 11112222344444444444444 345899999987322 1222233333 234 34454
Q ss_pred EeCchhhhhc-------CCcceeEeeccCChhhHHHHHhhhh
Q 046086 270 TTRDKHVLSN-------CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 270 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
||=++ .-.. ...-+.+.|...+.+++.+.+..-.
T Consensus 306 TT~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 306 TTLDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred ccHHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 44433 2111 1223577899999999998886543
No 307
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.86 E-value=0.021 Score=66.31 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHH
Q 046086 152 SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSK 231 (966)
Q Consensus 152 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 231 (966)
.+..++..++|++|+||||||..++++-. |. ++=+. .+.......+-+.+...+.......
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhccccc------------
Confidence 35678999999999999999999998632 21 11221 2444555566666655544332110
Q ss_pred HhcCCcEEEEEecCCChH
Q 046086 232 RFTRKKVLIVFDDVTHLK 249 (966)
Q Consensus 232 ~L~~k~~LlVLDdv~~~~ 249 (966)
-.+++.-||+|.++...
T Consensus 384 -adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -cCCCcceEEEecccCCc
Confidence 02688899999997643
No 308
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.85 E-value=0.033 Score=54.57 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=62.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhC-CCC---CCCC-------hh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLN-DRN---VKNS-------PN 223 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~---~~~~-------~~ 223 (966)
..+|-|++..|-||||.|..++-+...+=-.++.+.-..... ..+-....+.+.-.+.. ... ...+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 357888888999999999999887665544444443232211 12222222222000000 000 0011 12
Q ss_pred hhHHHHHHHhcC-CcEEEEEecCCChH-----HHHHHhcccCCCCCCcEEEEEeCch
Q 046086 224 IVLNFQSKRFTR-KKVLIVFDDVTHLK-----QIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 224 ~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
...+..++.+.. .-=|||||.+...- ..+.+...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233444455544 44599999984221 1223333333335778999999987
No 309
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.81 E-value=0.0094 Score=68.42 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=41.4
Q ss_pred CccccccchHHHHHHhhh----cCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 132 KELVGVECPINEIESLLR----TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.+++|+++.+++|.+.|. .-...-+++.++|++|+||||||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999999883 22345679999999999999999999986543
No 310
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.094 Score=59.84 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=79.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
.=|.+||++|.|||-||++|+++-...| +. +. +. .+..+... .+.......+.+.-..
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK------GP-ELlNkYVG---------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK------GP-ELLNKYVG---------ESERAVRQVFQRARAS 603 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec------CH-HHHHHHhh---------hHHHHHHHHHHHhhcC
Confidence 3488999999999999999999876554 43 11 11 12222111 1112233344444567
Q ss_pred CcEEEEEecCCChH-------------HHHHHhcccCCC--CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhh
Q 046086 236 KKVLIVFDDVTHLK-------------QIEFLIGRIDWL--ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVD 295 (966)
Q Consensus 236 k~~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~e 295 (966)
.+++|.+|.++... .+..|+..++.. ..|.-||-.|..+++... -.-+..+-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 89999999986431 255566555533 345566666665544332 2345678888889999
Q ss_pred HHHHHhhhhc
Q 046086 296 ALKLFSRRAF 305 (966)
Q Consensus 296 a~~Lf~~~a~ 305 (966)
-.+++....-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999887764
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.80 E-value=0.026 Score=55.59 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=64.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
-.+++|.|..|.|||||.+.++-... ...+.+++.... ... ......... .+.-. .+....+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~~~~~~---~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-ASPRDARRA---GIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CCHHHHHhc---CeEEE-EecCHHHHHHHHHHHHHh
Confidence 35799999999999999999987543 345666664221 110 011110000 00000 011122233344555666
Q ss_pred CCcEEEEEecCCC---hH---HHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 235 RKKVLIVFDDVTH---LK---QIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 235 ~k~~LlVLDdv~~---~~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
.++-++++|+-.. .. .+..++..+. ..|..||++|.+...+... .++++.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 7778999998632 22 2222332221 2467888898887644432 2344444
No 312
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.051 Score=63.33 Aligned_cols=172 Identities=19% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCC---ceEEEEeehhhh
Q 046086 130 DNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE---GSYFAHNVQEAQ 196 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~ 196 (966)
...+.-|.|+..+++.+.+.. +..-++-|.++|++|.|||.||++++-+..-.|- +.-|+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------ 221 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------ 221 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh------
Confidence 346788999999888887752 1122456899999999999999999987543331 111111
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCC
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDW 260 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 260 (966)
. . .........+...+..++.++.|++|.++... .+..++...+.
T Consensus 222 ----------m-----f----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 222 ----------M-----F----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ----------h-----h----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 0 0 01111133344555566778899999875321 25566666676
Q ss_pred CCCCc--EEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCC-CccHHHHHHHHHHHcCCCch
Q 046086 261 LASGS--RIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDP-NASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 261 ~~~gs--~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~iv~~~~G~PL 330 (966)
++.+. .|+-.|-.++|+.. -+-++.+.++..+-..-.+.+.-|+-..... .-++. .|++.+-|.-.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 66333 33333444444422 2345667777777677777777665332221 22222 26666666543
No 313
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.78 E-value=0.11 Score=61.82 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.....++|....+.++.+.+..-......|.|+|..|.|||++|+.+.+.-.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999998888764333344588999999999999999987543
No 314
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.78 E-value=0.024 Score=63.12 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=63.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE-eehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH-NVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
...|.|.|+.|.||||+.+.+...+.......++.. +-.+. ..... ...................++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~--------~~~~~-~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY--------VHRNK-RSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh--------hccCc-cceEEccccCCCCcCHHHHHHHhh
Confidence 367999999999999999999987766555555442 11110 00000 000000001111224566678888
Q ss_pred cCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 234 TRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
+..+=.|++|.+.+.+......... ..|-.++.|.-..
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 8899999999999887766544332 2454555555443
No 315
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.77 E-value=0.06 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 316
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.76 E-value=0.014 Score=66.21 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
...++||++.++.+...+..+. -|.|.|++|+|||++|+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 3468999999999988886544 3889999999999999999986543
No 317
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.014 Score=59.00 Aligned_cols=30 Identities=33% Similarity=0.382 Sum_probs=26.9
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456799999999999999999999988765
No 318
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.21 Score=55.02 Aligned_cols=100 Identities=16% Similarity=0.038 Sum_probs=53.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..++++|+|+.|+||||++..++..+..+-..+.++..- ..+.+...-++.....+.-.-....+..+....+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD---tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD---TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC---ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 467999999999999999999998765443445555421 11111122222222222111112234444444444332
Q ss_pred -cCCcEEEEEecCCC----hHHHHHHhc
Q 046086 234 -TRKKVLIVFDDVTH----LKQIEFLIG 256 (966)
Q Consensus 234 -~~k~~LlVLDdv~~----~~~~~~l~~ 256 (966)
.+..=+|++|-.-. .+.++.+..
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~ 309 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISA 309 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHH
Confidence 13456788898733 344555543
No 319
>PRK04328 hypothetical protein; Provisional
Probab=95.74 E-value=0.061 Score=57.00 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..|.++|..+-+.-.++.|.|.+|.|||+||.++...-..+-+.++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566666555456678999999999999999998776444556777876
No 320
>PRK08233 hypothetical protein; Provisional
Probab=95.74 E-value=0.028 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.083 Score=52.46 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=64.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--C-------CCChhhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--V-------KNSPNIV 225 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~-------~~~~~~~ 225 (966)
-.+++|.|..|.|||||.+.++-... ...+.+++.... ... .......+.+ .-+..... . ....+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 45799999999999999999987543 345555554211 000 0001111100 00000000 0 0111122
Q ss_pred HHHHHHHhcCCcEEEEEecCCC------hHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 226 LNFQSKRFTRKKVLIVFDDVTH------LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 226 ~~~l~~~L~~k~~LlVLDdv~~------~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
.-.+.+.+..++-+++||+-.. .+.+..++..+. .+..||++|.+...... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2334555667778999998632 223333333332 35678888888876643 4455544
No 322
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.73 E-value=0.1 Score=56.67 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=34.9
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
+.++=..+....+...+.. .+.|.|.|.+|.||||+|+.++..+...|-
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3444444455556666643 245999999999999999999998875543
No 323
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.69 E-value=0.0085 Score=56.19 Aligned_cols=22 Identities=50% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|+|.|.+|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 324
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0011 Score=67.70 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=54.6
Q ss_pred EEecCCCCcccc--cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCC---CCCCCccCcEEeccCccCC
Q 046086 528 FEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP---DLSQARNLERLKLDGCSSL 602 (966)
Q Consensus 528 L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~~~~~ 602 (966)
|++-|+.+..+. ..++.|++|.|+-|+|+.| ..+..+++|+.|.|..|.+. .+. -+.++++|+.|.|..|.-.
T Consensus 24 LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 24 LNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcc
Confidence 344444444444 5566777777777777776 55677777777777777532 222 2566677777777766554
Q ss_pred ccccc-----cccCCCcccEEe
Q 046086 603 METHS-----SIQYLNKLEVLD 619 (966)
Q Consensus 603 ~~~~~-----~l~~l~~L~~L~ 619 (966)
+.-+. .+.-|++|+.||
T Consensus 102 ~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 102 GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccchhHHHHHHHHcccchhcc
Confidence 44332 244566666665
No 325
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.69 E-value=0.064 Score=56.14 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN 191 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 191 (966)
+..|.+++..+-+.-..+.|.|.+|.||||+|.+++.....+-+.++|+..
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 345666665444556789999999999999999987654445566778763
No 326
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.68 E-value=0.039 Score=58.84 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=60.4
Q ss_pred hHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCC
Q 046086 140 PINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVK 219 (966)
Q Consensus 140 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 219 (966)
.++.+.+++.. ...+|.|.|..|.||||+++.+.+.+...-..++.+.+..+... .+. .+..- ..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~~v---~~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQVQV---NE 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEEEe---CC
Confidence 33445555532 23579999999999999999998876542223344432222110 010 00000 00
Q ss_pred CChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcc
Q 046086 220 NSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGR 257 (966)
Q Consensus 220 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 257 (966)
.........++..++..+=.|+++++.+.+....+...
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 11123456778888888999999999998876654433
No 327
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.23 Score=50.38 Aligned_cols=150 Identities=19% Similarity=0.257 Sum_probs=81.6
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 132 KELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
.++=|.|-..+++.+.... +-+..|-|.++|++|.|||.||+++++.-...| +..++.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------ 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------ 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH------
Confidence 3456778788888776642 224467789999999999999999999765544 333321
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH------------H----HHHHhcccCCCC--
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK------------Q----IEFLIGRIDWLA-- 262 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------------~----~~~l~~~~~~~~-- 262 (966)
+-+++. +++.. ....+.++-.-.+.+..|.+|.++... . +-+++...+.|.
T Consensus 224 -efvqky-----lgegp-----rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 224 -EFVQKY-----LGEGP-----RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred -HHHHHH-----hccCc-----HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 111221 11110 011122222224567888899886432 1 233444444443
Q ss_pred CCcEEEEEeCchhhh-----hcCCcceeEeeccCChhhHHHHHhhh
Q 046086 263 SGSRIIITTRDKHVL-----SNCLVDQIYEVKELLDVDALKLFSRR 303 (966)
Q Consensus 263 ~gs~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~ 303 (966)
...++|+.|.....+ ..-.-+..++.+--+..+-.-.|...
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 446778776544322 22223455666644444444445443
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.65 E-value=0.052 Score=53.98 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEee--hhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNV--QEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
-.+++|.|..|.|||||++.++-... ...+.+++... .-..+... ...-+...-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 35899999999999999999886543 23444544321 00000000 11112223344555
Q ss_pred hcCCcEEEEEecCCC---hHH---HHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeec
Q 046086 233 FTRKKVLIVFDDVTH---LKQ---IEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVK 289 (966)
Q Consensus 233 L~~k~~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (966)
+..++-++++|+-.. ... +..+...... ..+..||++|.+....... .++++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 666778999998632 222 2222222211 1235678888877655432 23444444
No 329
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.061 Score=56.35 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=25.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
...++|||++|.|||-+|+.|+..+.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 45799999999999999999999875444
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.072 Score=59.71 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998765
No 331
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.072 Score=56.59 Aligned_cols=98 Identities=21% Similarity=0.143 Sum_probs=59.0
Q ss_pred HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH-HhCCC-CCCC
Q 046086 143 EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST-LLNDR-NVKN 220 (966)
Q Consensus 143 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~-l~~~~-~~~~ 220 (966)
.+..+|..+-+.-+++-|+|+.|.||||+|.+++-.....-..++|++.... ... .-++++... +..-. ....
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~----l~p-~r~~~l~~~~~d~l~v~~~~ 122 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA----LDP-ERAKQLGVDLLDNLLVSQPD 122 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC----CCH-HHHHHHHHhhhcceeEecCC
Confidence 4455555555677899999999999999999998877766678899983322 222 223444444 21111 1233
Q ss_pred ChhhhHHHHHHHh---cCCcEEEEEecC
Q 046086 221 SPNIVLNFQSKRF---TRKKVLIVFDDV 245 (966)
Q Consensus 221 ~~~~~~~~l~~~L---~~k~~LlVLDdv 245 (966)
+.+.....+.... ..+--|+|+|.|
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 3333333333332 223458888987
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.60 E-value=0.03 Score=55.77 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++.+.|++|.||||+++.++..+...-..+..++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988766533344443
No 333
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.014 Score=67.58 Aligned_cols=53 Identities=28% Similarity=0.339 Sum_probs=44.8
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 132 KELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
++-+|+++..++|.+.+.. ++-+-++++.+|++|+|||.+|+.++..+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4568999999999998863 3456789999999999999999999998877763
No 334
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.51 E-value=0.037 Score=58.95 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=23.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.|.|+|.||.||||+|+++...+...=..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46899999999999999999997765333334443
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.51 E-value=0.097 Score=51.14 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=65.9
Q ss_pred HHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccccccchhhHHHHHhhChhhHHHH
Q 046086 8 LLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEERFPEMRKRW 87 (966)
Q Consensus 8 l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~~~~~~~~w 87 (966)
+.+|++++.+.+.|..-....+.. -.++.+.+... ..+..++.|+=|+|--+ ++.++.|
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~-------------------~~~~~~~ 60 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVP-------------------TWVTARW 60 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCC-------------------HHHHHHH
Confidence 678999999999999866543222 24455555532 22345777777777531 0113445
Q ss_pred HHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCC-CCceEEEEeecCCC
Q 046086 88 RNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGS-AGVCKLGIWGIGGI 166 (966)
Q Consensus 88 ~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGi 166 (966)
..++.+......+... ...-.|.+.-++.+.+.+.... .....|+++|++|+
T Consensus 61 ~~~~~~~~~~~~~~iS---------------------------a~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nv 113 (157)
T cd01858 61 VKILSKEYPTIAFHAS---------------------------INNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNV 113 (157)
T ss_pred HHHHhcCCcEEEEEee---------------------------ccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCC
Confidence 5544322110000000 0011233333444444432111 12346889999999
Q ss_pred chhHHHHHHHH
Q 046086 167 GKTTIAGAVFN 177 (966)
Q Consensus 167 GKTtLA~~v~~ 177 (966)
|||||...+..
T Consensus 114 GKStliN~l~~ 124 (157)
T cd01858 114 GKSSIINTLRS 124 (157)
T ss_pred ChHHHHHHHhc
Confidence 99999999875
No 336
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.51 E-value=0.077 Score=53.95 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=56.7
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCC
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNS 221 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 221 (966)
+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++.-. ......+........ .
T Consensus 8 ~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT---------~~Aa~~L~~~~~~~a---~- 71 (196)
T PF13604_consen 8 EAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT---------NKAAKELREKTGIEA---Q- 71 (196)
T ss_dssp HHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS---------HHHHHHHHHHHTS-E---E-
T ss_pred HHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc---------HHHHHHHHHhhCcch---h-
Confidence 344444432 346888999999999999999988776653334444311 112222222221110 0
Q ss_pred hhhhHHHHHHHh---------cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 222 PNIVLNFQSKRF---------TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 222 ~~~~~~~l~~~L---------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
.....+.... ..++-+||+|++... .++..+..... ..|.++|+.--..
T Consensus 72 --Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 72 --TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp --EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred --hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 0001101000 123459999998654 45666665544 2577887765444
No 337
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.51 E-value=0.0072 Score=55.46 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEeecCCCchhHHHHHHHHHhhccCCce
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTSRHFEGS 186 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 186 (966)
|.|+|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988877643
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.50 E-value=0.078 Score=52.75 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCC---------CCChhhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNV---------KNSPNIV 225 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---------~~~~~~~ 225 (966)
-.+++|.|..|.|||||.+.++-... ...+.+++.... .. ........+.+ .-+...... ....+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD-IS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE-cc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 35799999999999999999987543 334555553211 00 00111111111 000000000 0111122
Q ss_pred HHHHHHHhcCCcEEEEEecCCC---h---HHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 226 LNFQSKRFTRKKVLIVFDDVTH---L---KQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 226 ~~~l~~~L~~k~~LlVLDdv~~---~---~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
.-.+.+.+..++=++++|+-.. . ..+..++.... ..|..||++|.+...... .++++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3334455666777899998632 2 22333333322 246778888888876542 4555554
No 339
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.50 E-value=0.012 Score=59.91 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
+|+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.035 Score=55.20 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=48.4
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh-ccCCc-eEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS-RHFEG-SYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
.|.|.|.+|.||||+|+.+++++. .|.+. -+|...+. .. ..+.+++-.-+.... ....+.....+..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~---~~---t~lg~~~k~~i~~g~--lv~d~i~~~~v~~rl~ 73 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIA---ER---TELGEEIKKYIDKGE--LVPDEIVNGLVKERLD 73 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhc---cC---ChHHHHHHHHHHcCC--ccchHHHHHHHHHHHH
Confidence 478999999999999999999842 22231 12221111 11 222222222232222 2222233345555554
Q ss_pred CC--cEEEEEecC-CChHHHHHHhcc
Q 046086 235 RK--KVLIVFDDV-THLKQIEFLIGR 257 (966)
Q Consensus 235 ~k--~~LlVLDdv-~~~~~~~~l~~~ 257 (966)
.. +--+|+|+. ....|.+.+...
T Consensus 74 ~~d~~~~~I~dg~PR~~~qa~~l~r~ 99 (178)
T COG0563 74 EADCKAGFILDGFPRTLCQARALKRL 99 (178)
T ss_pred hhcccCeEEEeCCCCcHHHHHHHHHH
Confidence 32 228899998 445566655543
No 341
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.46 E-value=0.054 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.|.++|++|+||||+|+++++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887644
No 342
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.40 E-value=0.085 Score=51.55 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhcCCcEEEEEec----CCChHHHH--HHhcccCCCCCCcEEEEEeCchhhhhcCC
Q 046086 223 NIVLNFQSKRFTRKKVLIVFDD----VTHLKQIE--FLIGRIDWLASGSRIIITTRDKHVLSNCL 281 (966)
Q Consensus 223 ~~~~~~l~~~L~~k~~LlVLDd----v~~~~~~~--~l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 281 (966)
++....|.+.+-+++-+++-|. +|..-.|+ .+...++ ..|..||++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 3445567777788899999985 44443333 3334433 57999999999998877653
No 343
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.39 E-value=0.022 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+|+|.|.+|.||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.34 E-value=0.072 Score=57.51 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc-C-CceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH-F-EGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~ 190 (966)
..++++|+|++|+||||++..++..+..+ - ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35699999999999999999999877543 1 3445554
No 345
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.34 E-value=0.065 Score=53.44 Aligned_cols=35 Identities=29% Similarity=0.171 Sum_probs=27.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
..+|+|.|++|.||||+|+.++..+...-....++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999999875432234444
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.33 E-value=0.085 Score=56.85 Aligned_cols=54 Identities=13% Similarity=-0.066 Sum_probs=36.8
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..-.++.|.|.+|+||||+|.+++.....+ -..++|++. ......+...+...+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~------E~~~~~~~~r~~~~~ 82 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL------EEPVVRTARRLLGQY 82 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc------ccCHHHHHHHHHHHH
Confidence 344588999999999999999998876544 456677752 223344555554443
No 347
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.12 Score=53.43 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=42.0
Q ss_pred CCCccccccchHHHHHHhhhcCC-----------CCceEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 130 DNKELVGVECPINEIESLLRTGS-----------AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
...++=|.+..+++|.+.....- ...+-|.++|.+|.|||-||++|+++-+..|-
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 34556788999999988775321 22445789999999999999999998776653
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.29 E-value=0.075 Score=56.60 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=64.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCC-----CCCCChhhhHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDR-----NVKNSPNIVLNF 228 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-----~~~~~~~~~~~~ 228 (966)
+...++|+|..|.|||||.+.++..+... .+.+++... ..........+...+ ..+.... ....+... ...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-cccccccccccccccccchH-HHH
Confidence 45689999999999999999999876543 334444211 011001112222111 1111110 00111111 111
Q ss_pred HHHHh-cCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhh
Q 046086 229 QSKRF-TRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVL 277 (966)
Q Consensus 229 l~~~L-~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 277 (966)
+...+ ...+=++++|.+...+.+..+..... .|..+|+||-+..+.
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 22222 35677999999988877777766543 578899999876553
No 349
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.28 E-value=0.051 Score=62.62 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=40.4
Q ss_pred cchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 138 ECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 138 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34456777777655555678999999999999999999887765544567775
No 350
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.075 Score=52.88 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=63.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--C---------CCChh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--V---------KNSPN 223 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~---------~~~~~ 223 (966)
-.+++|+|..|.|||||++.++-... ...+.+++.... ... .. ....+.+ .-+..... . ...-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-HhhhccE-EEEecCCccccCCcHHHHhhcCHHH
Confidence 45799999999999999999987543 334555553211 000 00 0000000 00000000 0 11111
Q ss_pred hhHHHHHHHhcCCcEEEEEecCCCh------HHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 224 IVLNFQSKRFTRKKVLIVFDDVTHL------KQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 224 ~~~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
...-.+.+.+..++=++++|+-... ..+..++..+. ..|..||++|.+....... .++++.+
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 2233455666778889999986321 22333333222 2367788998888655432 2344444
No 351
>PHA02244 ATPase-like protein
Probab=95.24 E-value=0.065 Score=58.77 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=33.2
Q ss_pred CCccccccchHHH----HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 131 NKELVGVECPINE----IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 131 ~~~~vGr~~~l~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...++|....+.. +.+++..+ .-|.|+|++|+|||+||+++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4457776665543 34444322 237889999999999999999986443
No 352
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.24 E-value=0.057 Score=50.58 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=18.5
Q ss_pred eecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecC
Q 046086 489 RINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHE 532 (966)
Q Consensus 489 ~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~ 532 (966)
.++..+|.++++|+.+.+..+ +..++...+ .+|+.+.+.+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESS
T ss_pred EECHHHHhCCCCCCEEEECCC----eeEeChhhcccccccccccccc
Confidence 356677888888888887632 244444444 3444444443
No 353
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.096 Score=57.32 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=39.3
Q ss_pred hHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 140 PINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 140 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 34667777754433446899999999999999999999998776 777775
No 354
>PRK03839 putative kinase; Provisional
Probab=95.23 E-value=0.014 Score=58.63 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.23 E-value=0.078 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
-.+++|+|+.|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998863
No 356
>PRK00625 shikimate kinase; Provisional
Probab=95.18 E-value=0.015 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998874
No 357
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.16 E-value=0.48 Score=50.44 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=27.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..+++++|.+|+||||+++.+...+..+=..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999887654323344444
No 358
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.21 Score=55.59 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=80.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
|=-.++|+||.|||++..++++.+. |+ ++.-...++.....+ +.|+.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~n~dL----r~LL~~----------------------t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKLDSDL----RHLLLA----------------------TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccCcHHH----HHHHHh----------------------CC
Confidence 4567999999999999999998663 32 333323222222111 222211 22
Q ss_pred CcEEEEEecCCChHH--------------------HHHHhcccC--CCCCC-cEE-EEEeCchhhhhc-----CCcceeE
Q 046086 236 KKVLIVFDDVTHLKQ--------------------IEFLIGRID--WLASG-SRI-IITTRDKHVLSN-----CLVDQIY 286 (966)
Q Consensus 236 k~~LlVLDdv~~~~~--------------------~~~l~~~~~--~~~~g-s~I-IiTTR~~~v~~~-----~~~~~~~ 286 (966)
.|-+||+.|+|-.-+ +--|+..++ |...| -|| |.||-..+-+.. -+.+..+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 455777777743311 112332222 33332 366 557776644332 2345677
Q ss_pred eeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhh
Q 046086 287 EVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFL 339 (966)
Q Consensus 287 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L 339 (966)
.+.--+.+.-..||..+..... +. .+..+|.+...|.-+.=..++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 8888888888888888774332 22 235555555555544444444443
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.14 E-value=0.14 Score=57.45 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.9
Q ss_pred eEEEEeecCCCchhHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
..++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3699999999999999999875
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.14 E-value=0.085 Score=60.77 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=39.3
Q ss_pred hHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 140 PINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 140 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 346777777655455678999999999999999999987765445667775
No 361
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.14 E-value=0.067 Score=65.72 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...++|+...+.++.+.+..-...-.-|.|+|..|.|||++|+.+.+.-.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 35799999999988776653223334689999999999999999987543
No 362
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.0086 Score=36.75 Aligned_cols=21 Identities=48% Similarity=0.706 Sum_probs=13.8
Q ss_pred CccEEEcCCCCccccchHhhc
Q 046086 733 STEVLHLKGNNLERIPESIRH 753 (966)
Q Consensus 733 ~L~~L~Ls~n~l~~lp~~i~~ 753 (966)
+|++|+|++|+|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765543
No 363
>PRK06217 hypothetical protein; Validated
Probab=95.12 E-value=0.061 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|.|++|.||||+|+++.+++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 364
>PTZ00301 uridine kinase; Provisional
Probab=95.11 E-value=0.018 Score=58.95 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=25.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998876544
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.09 E-value=0.17 Score=48.44 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=36.7
Q ss_pred hHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeeccc
Q 046086 5 SESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDP 59 (966)
Q Consensus 5 ~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdp 59 (966)
..++.++|+.+.+.+.|++-....+.+. .++.+.+.... .+..++-|+=|.|-
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~DL 54 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKADL 54 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechhc
Confidence 4578999999999999999877666653 25666655432 24456777666663
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.08 E-value=0.013 Score=53.00 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.3
Q ss_pred EEEeecCCCchhHHHHHHHHHhhccC
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
|.|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56899999999999999998776544
No 367
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.08 E-value=0.61 Score=53.73 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=47.6
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh-ccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS-RHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..|...-...|.+++. +-..-.++.|-|.+|+|||++|..++.... .+-..++|++ -......+...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4555555666666654 333445889999999999999999997654 3333455654 2345566666666554
Q ss_pred h
Q 046086 213 L 213 (966)
Q Consensus 213 ~ 213 (966)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 368
>PRK04040 adenylate kinase; Provisional
Probab=95.07 E-value=0.02 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=23.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|+|++|.||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 369
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.05 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-.+++|.|..|.|||||++.++-.. ....+.+.+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~ 60 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILID 60 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEC
Confidence 3579999999999999999998644 2345555553
No 370
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.13 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|..|.|||||++.++-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 371
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.2 Score=55.76 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 190 (966)
.-++++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 356899999999999999999998765444 3445543
No 372
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.27 Score=56.66 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 190 (966)
..++|+|+|.+|+||||++..++..+..+. ..+.++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 357899999999999999999988765443 3344443
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.039 Score=53.95 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
.+++|+|..|.|||||++.++..+. ...+.+++....- .. ......... +.-.. +...-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~~-~~~~~~~~~----i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-AK-LPLEELRRR----IGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-cc-CCHHHHHhc----eEEEe-eCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999987654 3456666643210 00 001111110 00000 011112233345555666
Q ss_pred CcEEEEEecCCC---hHH---HHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEee
Q 046086 236 KKVLIVFDDVTH---LKQ---IEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEV 288 (966)
Q Consensus 236 k~~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 288 (966)
.+-++++|+... ... +..++.... ..+..+|++|.+....... .++++.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 678999999732 222 323332222 2356788888887665542 2445444
No 374
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.02 E-value=0.11 Score=57.43 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 190 (966)
..+..+|..+-+.-.++-|+|.+|+|||++|.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 556666655445667899999999999999999987543221 3677887
No 375
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.95 E-value=0.24 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCceEEEEeecCCCchhHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVF 176 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~ 176 (966)
+++..|.+.|.+|.|||.||.+..
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHH
Confidence 678899999999999998887654
No 376
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.94 E-value=0.11 Score=67.38 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+-|.++|++|.|||.||+++|.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999998753
No 377
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.93 E-value=0.022 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.91 E-value=0.96 Score=49.48 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=33.7
Q ss_pred eEeeccCChhhHHHHHhhhhcCCCCCC-ccHHHHHHHHHHHcCCCchhH
Q 046086 285 IYEVKELLDVDALKLFSRRAFGEDDPN-ASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~iv~~~~G~PLal 332 (966)
.++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988874433222 223345666666679999644
No 379
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.0021 Score=65.66 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=56.8
Q ss_pred CceeEEEecCCCCcccc--cccccceEeecCCCCCccccc--ccccccccceecccCCCCCCCCCC------CCCCccCc
Q 046086 523 TDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWD--DVQNLVNIKEIDLHGSKQLSKLPD------LSQARNLE 592 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p~------l~~l~~L~ 592 (966)
+.|..|.|+-|.+++|. ..+++|++|.|..|.|..+-+ .++++++|+.|.|..|.-.+.-+. +.-++||+
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 45555556666666665 678899999999999997743 488999999999999987666552 56688998
Q ss_pred EEe
Q 046086 593 RLK 595 (966)
Q Consensus 593 ~L~ 595 (966)
.||
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 887
No 380
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.89 E-value=0.28 Score=51.64 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987654
No 381
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.89 E-value=0.05 Score=59.64 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=60.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC-CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG-GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
....++|.|..|.||||+++.+...+... ...+.+.+..+..... .... + ...........-...+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~----l---~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVH----L---FYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEE----E---EecCCCCCcCccCHHHHHHHH
Confidence 34689999999999999999998766433 2344444333221111 0000 0 000000011112345566777
Q ss_pred hcCCcEEEEEecCCChHHHHHHhcccCCCCCCcE-EEEEeCch
Q 046086 233 FTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSR-IIITTRDK 274 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~-IIiTTR~~ 274 (966)
++..+=.||+|.+...+.++.+... . .|.. ++.|+...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAG 253 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCC
Confidence 8888889999999887665543332 2 3332 45665544
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.89 E-value=0.16 Score=52.09 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhcCCcEEEEEecC----CC--hHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeec
Q 046086 223 NIVLNFQSKRFTRKKVLIVFDDV----TH--LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVK 289 (966)
Q Consensus 223 ~~~~~~l~~~L~~k~~LlVLDdv----~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (966)
+...-++.+.|-..+-+|+.|+= |. .+.+-.++.... ...|..||+.|-|..++..+ ++++.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 34456677888889999999973 22 233333333321 13577899999999988763 4455544
No 383
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.86 E-value=0.036 Score=58.02 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 152 SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 152 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
.....+|+|.|+.|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998776543
No 384
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.84 E-value=0.064 Score=52.03 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=47.4
Q ss_pred EeecCCCchhHHHHHHHHHhhccCCceEEEEe---ehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC-
Q 046086 160 IWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN---VQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR- 235 (966)
Q Consensus 160 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~- 235 (966)
|.|++|+||||+|+.+++++. ...++. +++...... .+.+++...+.... ....+.....++.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-----~~~is~~~llr~~~~~~s--~~g~~i~~~l~~g~--~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-----LVHISVGDLLREEIKSDS--ELGKQIQEYLDNGE--LVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-----SEEEEHHHHHHHHHHTTS--HHHHHHHHHHHTTS--S--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC-----cceechHHHHHHHHhhhh--HHHHHHHHHHHhhc--cchHHHHHHHHHHHHhhh
Confidence 689999999999999999762 234431 111111111 12223322232222 22233455566666543
Q ss_pred -CcEEEEEecC-CChHHHHHHhc
Q 046086 236 -KKVLIVFDDV-THLKQIEFLIG 256 (966)
Q Consensus 236 -k~~LlVLDdv-~~~~~~~~l~~ 256 (966)
..--+|||+. .+.+|.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 2445789998 55666666554
No 385
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.82 E-value=0.14 Score=57.98 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=36.3
Q ss_pred ccccccchHHHHHHhhh-----cCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 133 ELVGVECPINEIESLLR-----TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++-=-.+-+.++..||. ...-+.+++.|+|++|.||||.++.++..+.
T Consensus 83 eLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 83 ELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 33334455677888887 3445567999999999999999999998653
No 386
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.82 E-value=0.15 Score=61.88 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-..|+|+|..|.|||||||.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 387
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.82 E-value=0.059 Score=60.04 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=38.9
Q ss_pred CccccccchHHHHHHhhhcC------------CCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 132 KELVGVECPINEIESLLRTG------------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..+||.+..++.+.-.+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45788888888776555421 11236789999999999999999999876544
No 388
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.82 E-value=0.023 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...|.|+|++|.||||+|+.+++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999873
No 389
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.80 E-value=0.046 Score=67.15 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCC---hHHHH----HHhcccCCCCCCcEEEEEeCchhhhhcCCcc---eeEeeccCChhhHHHHHhhhh
Q 046086 235 RKKVLIVFDDVTH---LKQIE----FLIGRIDWLASGSRIIITTRDKHVLSNCLVD---QIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 235 ~k~~LlVLDdv~~---~~~~~----~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~---~~~~l~~L~~~ea~~Lf~~~a 304 (966)
..+-|+++|.... ..... .++..+. ..|+.+|+||....+....... ..+.+. ++. +.+. |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4788999999833 22222 2222222 3578999999998764321111 111121 111 1111 11111
Q ss_pred cCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHHHHh
Q 046086 305 FGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMKKME 355 (966)
Q Consensus 305 ~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l~ 355 (966)
....+... .+-.|++++ |+|-.+..-|..+.+....+++..+.++.
T Consensus 476 -~~G~~g~S---~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 -LKGIPGES---YAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCCCCCCc---HHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12222221 255666665 78888888887776655556666666554
No 390
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.78 E-value=0.12 Score=56.42 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH--hhc----cCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK--TSR----HFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~----~F~~~~~~~ 190 (966)
...|.++|..+-..-+++-|+|.+|+|||+||.+++-. +.. .=..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 35666777655566678999999999999999987742 221 124678886
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.77 E-value=0.14 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
++.|.|++|+||||+|+.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998874
No 392
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.74 E-value=0.037 Score=55.86 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=52.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--CCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--VKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~~l~~~ 232 (966)
...++|.|..|.||||+++.+...+... .+.+.+.+..+...... ... ++..... .........+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4579999999999999999998866532 23333332211110000 000 0000000 011112345566677
Q ss_pred hcCCcEEEEEecCCChHHHHHHh
Q 046086 233 FTRKKVLIVFDDVTHLKQIEFLI 255 (966)
Q Consensus 233 L~~k~~LlVLDdv~~~~~~~~l~ 255 (966)
++..+=.++++.+.+.+.++.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 77788899999998887665443
No 393
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.74 E-value=0.12 Score=55.94 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=58.3
Q ss_pred chHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCC-
Q 046086 139 CPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDR- 216 (966)
Q Consensus 139 ~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~- 216 (966)
.-...|...|. .+-+.-+++-|+|..|+||||||..+..+....-..++|++.-.. .+ ...++.+--.+..--
T Consensus 36 TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~----ld-~~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 36 TGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHA----LD-PEYAESLGVDLDRLLV 110 (322)
T ss_dssp -S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS--------HHHHHHTT--GGGEEE
T ss_pred cCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCccc----ch-hhHHHhcCccccceEE
Confidence 33456666665 333556899999999999999999999887766667788873211 11 122222211111100
Q ss_pred CCCCChhhhHHHHHHHhcC-CcEEEEEecCCCh
Q 046086 217 NVKNSPNIVLNFQSKRFTR-KKVLIVFDDVTHL 248 (966)
Q Consensus 217 ~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~ 248 (966)
..+...++........++. .--++|+|.|...
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 0233445555555555543 4458899998543
No 394
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.41 Score=52.43 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=32.4
Q ss_pred eeEeeccCChhhHHHHHhhhhcC----CCCCCccHHHHHHHHHHHcCCCchhHHhHhhhh
Q 046086 284 QIYEVKELLDVDALKLFSRRAFG----EDDPNASYKELTQEAVKYAKGVPLALKVLGSFL 339 (966)
Q Consensus 284 ~~~~l~~L~~~ea~~Lf~~~a~~----~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L 339 (966)
.+++|+..+.+|+.++...+.-. ...+. ++.-+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 35788889999988877655421 11222 2334566666789996556555544
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.73 E-value=0.025 Score=57.08 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=23.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
++++|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999865
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.70 E-value=0.029 Score=57.74 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.6
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+...+|+|+|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999998764
No 397
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.69 E-value=0.04 Score=51.55 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+++.+.+...-..-.+|.+.|.-|.||||+++.+++.+.
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3344444432223345899999999999999999998653
No 398
>PRK13947 shikimate kinase; Provisional
Probab=94.65 E-value=0.024 Score=56.35 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 399
>PRK05973 replicative DNA helicase; Provisional
Probab=94.65 E-value=0.15 Score=53.03 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=29.8
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..-.++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999999876655555566765
No 400
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.2 Score=52.69 Aligned_cols=190 Identities=21% Similarity=0.223 Sum_probs=101.1
Q ss_pred CccccccchHHHHHHhhhcC----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCH
Q 046086 132 KELVGVECPINEIESLLRTG----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGL 201 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 201 (966)
+++=|.++...+|.+-+... -....=|.++|++|.|||-+|++|+.+.+= .|++ |+ +.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlS-VK------GP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLS-VK------GP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEe-ec------CH
Confidence 45557777777777665431 112334889999999999999999987543 3444 21 11
Q ss_pred HHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH---------------HHHHHhcccCCCC----
Q 046086 202 AHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK---------------QIEFLIGRIDWLA---- 262 (966)
Q Consensus 202 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---------------~~~~l~~~~~~~~---- 262 (966)
++...-.. .+.+...+...+.-..++++|.+|.+|... .+-.++..++...
T Consensus 740 -ELLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 740 -ELLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred -HHHHHHhc---------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 12222111 122233444455556789999999987653 1334444444333
Q ss_pred CCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhh---hcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 263 SGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRR---AFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 263 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~---a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.+--||=.|..++++.. -+-++...|++=+++|+..=..+. -|+-+..- + ..+|+++|.-. .
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedV-d----L~eiAk~cp~~-----~ 879 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDV-D----LVEIAKKCPPN-----M 879 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCc-C----HHHHHhhCCcC-----C
Confidence 33445556665554432 234566677766666554322211 12222211 2 45667777532 2
Q ss_pred HhhhhcCCCHHHHHHHHHH
Q 046086 335 LGSFLFGRRKEEWKSAMKK 353 (966)
Q Consensus 335 ~g~~L~~~~~~~w~~~l~~ 353 (966)
-|+-|+..-.+.|.++..+
T Consensus 880 TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 880 TGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3444444334556665543
No 401
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.63 E-value=0.051 Score=57.90 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.1
Q ss_pred cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 150 TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 150 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.+-+.-.++.|.|.+|.|||++|.+++.....+=+.++|++
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33345678999999999999999998776544556778876
No 402
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.58 E-value=0.087 Score=56.36 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 144 IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 144 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+.+.+..+-+.-+++.|.|.+|.|||++|.++..+.....+.++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44445455567789999999999999999999998888888899986
No 403
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.57 E-value=0.19 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998875
No 404
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.57 E-value=0.22 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.138 Sum_probs=22.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.++.|.|.+|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999886653
No 405
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.55 E-value=0.06 Score=57.35 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
.++.+|.|.|.+|.|||||+..+...+.....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 56889999999999999999999998876653
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.53 E-value=0.2 Score=51.26 Aligned_cols=20 Identities=45% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEeecCCCchhHHHHHHH
Q 046086 157 KLGIWGIGGIGKTTIAGAVF 176 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~ 176 (966)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 407
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.53 E-value=0.2 Score=50.93 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=25.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh-ccCCceEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS-RHFEGSYFA 189 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 189 (966)
-.+++|.|..|.|||||.+.++.... ....+.+++
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 45799999999999999999987541 233444444
No 408
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.49 E-value=0.2 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|..|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 409
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.48 E-value=0.17 Score=50.95 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
...+++|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987653
No 410
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.48 E-value=0.1 Score=55.77 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCCCccccccchHHH---HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 129 NDNKELVGVECPINE---IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
...+.+||..+..+. +.++...+.-.-|.|.|+|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 346789998877664 55666655556688999999999999999999999875533
No 411
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.21 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
-.+++|+|..|.|||||++.++-...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 45899999999999999999987654
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.45 E-value=0.098 Score=61.24 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=41.7
Q ss_pred chHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 139 CPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 139 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.-+.++.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456777777766566778999999999999999999988766666777775
No 413
>PRK06547 hypothetical protein; Provisional
Probab=94.44 E-value=0.037 Score=54.82 Aligned_cols=27 Identities=44% Similarity=0.577 Sum_probs=24.1
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999874
No 414
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.44 E-value=0.1 Score=57.73 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=34.7
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+||....+.++.+.+..-...-.-|.|+|..|.||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888877777765333333458999999999999999987643
No 415
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=1.7 Score=47.17 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=90.2
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc--------cC-C-ceEEEEeehhhhccCCHHHHHHHHHH
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR--------HF-E-GSYFAHNVQEAQENGGLAHLRQQLLS 210 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~F-~-~~~~~~~~~~~~~~~~~~~l~~~ll~ 210 (966)
++.+...+..+ .-.++..++|..|.||+++|+.+++.+-. .. + ...+++ .. ...-...++. ++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCHHHHH-HHHH
Confidence 34455555432 22456779999999999999999997621 11 1 111221 00 0111111221 1111
Q ss_pred HHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEEEeCc-hhhhhc-CCcceeE
Q 046086 211 TLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIIITTRD-KHVLSN-CLVDQIY 286 (966)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~ 286 (966)
.+.-.. .-.+.+=++|+|+++... ....|+..+...++++.+|++|.+ ..+... ......+
T Consensus 80 ~~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 80 KLYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred HhccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 111000 001355577889886653 355666666665677877766644 344433 2345688
Q ss_pred eeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 287 EVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 287 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
++.+++.++..+.+.... .++ +.+..++..++|.=-|+..+
T Consensus 145 ~f~~l~~~~l~~~l~~~~-----~~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN-----KEK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ECCCCCHHHHHHHHHHcC-----CCh---hHHHHHHHHcCCHHHHHHHH
Confidence 999999999988776541 111 23555666666633455543
No 416
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.43 E-value=0.11 Score=53.72 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 143 EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 143 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
++.+.+.....+..+|||.|+||.|||||..++...+..+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3444443333457899999999999999999999887654
No 417
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.41 E-value=0.031 Score=55.76 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 35899999999999999999999876
No 418
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.40 E-value=0.055 Score=55.18 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+...+|+|+|++|.||||||+.+...+...-.+.++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 44578999999999999999999998755434456664
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.40 E-value=0.066 Score=55.97 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=34.7
Q ss_pred hhhHHHHHHHhcCCcEEEEEecCC----ChHHH--HHHhcccCCCCCCcEEEEEeCchhhhhcC
Q 046086 223 NIVLNFQSKRFTRKKVLIVFDDVT----HLKQI--EFLIGRIDWLASGSRIIITTRDKHVLSNC 280 (966)
Q Consensus 223 ~~~~~~l~~~L~~k~~LlVLDdv~----~~~~~--~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 280 (966)
+.....+.+.|.++.=+++||.=- -..|+ -.+...+. ...|..||+++-|...+...
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh
Confidence 344566777888888899999742 22222 22222221 13577899999998766553
No 420
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.39 E-value=0.034 Score=55.52 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
++|.+.|++|.||||+|+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999987643
No 421
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.16 Score=52.93 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=36.6
Q ss_pred hhHHHHHHHhcCCcEEEEEec----CCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhhhc
Q 046086 224 IVLNFQSKRFTRKKVLIVFDD----VTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVLSN 279 (966)
Q Consensus 224 ~~~~~l~~~L~~k~~LlVLDd----v~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 279 (966)
.....+.+.|.+++=|+|||. ||.. ..+-.++..+. ..|..||++|-|-.....
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 334567788889999999997 3333 33445555444 348899999998865544
No 422
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.36 E-value=0.2 Score=50.29 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=25.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
-.+++|.|..|.|||||++.++.... ...+.+++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~ 59 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP-PASGEITL 59 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEE
Confidence 35799999999999999999987543 22344444
No 423
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.35 E-value=0.3 Score=61.14 Aligned_cols=194 Identities=19% Similarity=0.202 Sum_probs=96.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhcc-C---CceEEEEee--hhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHH
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRH-F---EGSYFAHNV--QEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQS 230 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~-F---~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 230 (966)
-+.|+|.+|.||||....++-....+ + +..+|+..- ........-..+...+...+....... .......
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhHHHH
Confidence 68899999999999999998754332 2 233333211 111111000033333333333222211 1122225
Q ss_pred HHhcCCcEEEEEecCCChHH------HHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeeccCChhhHH-------
Q 046086 231 KRFTRKKVLIVFDDVTHLKQ------IEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVKELLDVDAL------- 297 (966)
Q Consensus 231 ~~L~~k~~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~------- 297 (966)
+.+...++++.+|.++.... ...+-... ..-+.+.+|+|+|....-.........++..+.++.-.
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 67788999999999876542 22211111 12468899999998754443333334445544444322
Q ss_pred -HHHhhhhcCCCCCCc-cH-HHH---HHHHHHHcCCCchhHHhHhhhhc------CCCHHHHHHHHHHHh
Q 046086 298 -KLFSRRAFGEDDPNA-SY-KEL---TQEAVKYAKGVPLALKVLGSFLF------GRRKEEWKSAMKKME 355 (966)
Q Consensus 298 -~Lf~~~a~~~~~~~~-~~-~~~---~~~iv~~~~G~PLal~~~g~~L~------~~~~~~w~~~l~~l~ 355 (966)
+.+....++...... .+ ..+ ..+-++.....|++|.+.+.... ....+-++.+++.+-
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 122222222221110 01 111 12333444788998888874443 134455666666543
No 424
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.35 E-value=0.1 Score=61.49 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=41.5
Q ss_pred CCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 130 DNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 356799999999998888865444445689999999999999999988643
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.33 E-value=0.097 Score=58.29 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=54.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..+=+.|||..|.|||.|.-.+|+.+..+-..++.. ......+-..+....... .....+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF------------h~Fm~~vh~~l~~~~~~~----~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF------------HEFMLDVHSRLHQLRGQD----DPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc------------cHHHHHHHHHHHHHhCCC----ccHHHHHHHH
Confidence 456799999999999999999999654321111111 111122222221111111 2234445566
Q ss_pred cCCcEEEEEecC--CChHH---HHHHhcccCCCCCCcEEEEEeCch
Q 046086 234 TRKKVLIVFDDV--THLKQ---IEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 234 ~~k~~LlVLDdv--~~~~~---~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
.++..||.||.+ .+..+ +..|...+- ..|.. ||+|.+.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvv-lVaTSN~ 167 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVV-LVATSNR 167 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCE-EEecCCC
Confidence 677779999985 44444 444444332 35554 4444444
No 426
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.30 E-value=0.033 Score=62.76 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|.+.|.+|+||||+|..++.++.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999998763
No 427
>PRK08006 replicative DNA helicase; Provisional
Probab=94.28 E-value=0.36 Score=55.98 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=46.0
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..|...-...|.+... +-..-.++.|-|.+|+||||+|..++..... +-..++|++ -......+...++...
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS------lEM~~~ql~~Rlla~~ 276 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS------LEMPGEQIMMRMLASL 276 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe------ccCCHHHHHHHHHHHh
Confidence 4455555555555542 2233457889999999999999999877642 223344543 3455566777776654
No 428
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.24 E-value=0.049 Score=54.45 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=23.1
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887644
No 429
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.23 E-value=0.21 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 430
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.20 E-value=0.054 Score=60.36 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=39.5
Q ss_pred CccccccchHHHHHHhhhcC--------C----CCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 132 KELVGVECPINEIESLLRTG--------S----AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..++|.+..++.+..++... . ...+.|.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45889998888887776420 0 1136789999999999999999999875444
No 431
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.19 E-value=0.57 Score=48.08 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|.|..|.|||||++.++-.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999999864
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.17 E-value=0.14 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.7
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 433
>PRK13949 shikimate kinase; Provisional
Probab=94.15 E-value=0.038 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.0
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|+|++|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 434
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.15 E-value=0.2 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 435
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.15 E-value=0.41 Score=49.73 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|.|..|.|||||++.++-.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 436
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.14 E-value=0.15 Score=55.87 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEeecCCCchhHHHHHHHHHhh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998775
No 437
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.12 E-value=0.75 Score=48.55 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=88.9
Q ss_pred ccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 127 FENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
++...+.|+|-..-.. +...+......-+.+.|+|+.|+|||+-++.+++... ..|+.- .++.+....++.
T Consensus 67 ~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~---~~p~~~a~~~i~ 137 (297)
T COG2842 67 LEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIE---ADPSYTALVLIL 137 (297)
T ss_pred cccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-----cceeec---CChhhHHHHHHH
Confidence 3445677888765422 3333332223344899999999999999999987642 334321 233333444444
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcce
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQ 284 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~ 284 (966)
.+....... ......+....+..++++..-+|+.|+.+.. +.++.+....+..+-|-..+=+-| ..
T Consensus 138 ~i~~~~~~~--~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~pr---L~------- 205 (297)
T COG2842 138 IICAAAFGA--TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPR---LF------- 205 (297)
T ss_pred HHHHHHhcc--cchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChH---HH-------
Confidence 444443333 2333445666777777888889999998764 456666655443233322221222 11
Q ss_pred eEeeccCChhhHHHHHhhhhcCCC
Q 046086 285 IYEVKELLDVDALKLFSRRAFGED 308 (966)
Q Consensus 285 ~~~l~~L~~~ea~~Lf~~~a~~~~ 308 (966)
.+-.=+..+..++|.+..++..
T Consensus 206 --~~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 206 --KVLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred --hccccchHHHHHHHHHhhhHhh
Confidence 1111134567788888776643
No 438
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.10 E-value=0.082 Score=58.86 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=55.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCc---eEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG---SYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSK 231 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 231 (966)
-..|.|+|+.|.||||+++.+...+....+. ++.+.+-.+ .....+... .. ...+.............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~-~~-~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETI-SA-SVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccccc-cc-eeeeeeccccccCHHHHHHH
Confidence 4689999999999999999999877544331 222221111 111111000 00 00000011112244566778
Q ss_pred HhcCCcEEEEEecCCChHHHHHHhc
Q 046086 232 RFTRKKVLIVFDDVTHLKQIEFLIG 256 (966)
Q Consensus 232 ~L~~k~~LlVLDdv~~~~~~~~l~~ 256 (966)
.|+..+-.+++..+.+.+..+....
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHH
Confidence 8889999999999998887765443
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.07 E-value=0.039 Score=59.42 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=71.0
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
+.+.-.....+++.++|...-...+.|.|.|..|.||||+++.+...+...-..++-+.+..+.....
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~------------ 171 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG------------ 171 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC------------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc------------
Confidence 44444444556666666543234578999999999999999999987765522333333221111000
Q ss_pred HhCCCCCC-CChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEE-EEEeC
Q 046086 212 LLNDRNVK-NSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRI-IITTR 272 (966)
Q Consensus 212 l~~~~~~~-~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~I-IiTTR 272 (966)
........ .........++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 172 PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred cceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000000 23335567788888888889999999988877774333 356666 44444
No 440
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.06 E-value=0.076 Score=57.70 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCccccccchHHHH---HHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceE
Q 046086 130 DNKELVGVECPINEI---ESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSY 187 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 187 (966)
....+||.....+.. .+++..+.-.-|.|.+.|++|.|||+||..+++.+....+.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 356899998777653 4455444434688999999999999999999999987766443
No 441
>PRK13948 shikimate kinase; Provisional
Probab=94.05 E-value=0.044 Score=54.74 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
..+.|.++||.|.||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4567999999999999999999998743
No 442
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.05 E-value=0.03 Score=34.33 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=13.1
Q ss_pred ccEEeecccccccccccccC
Q 046086 660 IHFLDLYECGIEDMPLSIEC 679 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~ 679 (966)
|++|+|++|.++.+|.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 66677777767766666544
No 443
>PRK01184 hypothetical protein; Provisional
Probab=94.04 E-value=0.1 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=18.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.+|+|+|++|.||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 444
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.00 E-value=0.27 Score=52.24 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh--hcc----CCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT--SRH----FEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~----F~~~~~~~ 190 (966)
..|.++|..+-..-.+.-|+|.+|+|||+||..++-.. ... =..++|++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 46677775443445689999999999999999887543 222 13467776
No 445
>PRK08506 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.44 Score=55.49 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=48.9
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 133 ELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
...|...-...|.+++ .+-..-.++.|-|.+|+|||++|..++.....+=..++|++ -......+...+++..
T Consensus 171 ~~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 171 DIIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHh
Confidence 3456666666666665 23334458899999999999999999987654433455553 3445566776666654
Q ss_pred h
Q 046086 213 L 213 (966)
Q Consensus 213 ~ 213 (966)
.
T Consensus 244 s 244 (472)
T PRK08506 244 T 244 (472)
T ss_pred c
Confidence 3
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.97 E-value=0.53 Score=46.04 Aligned_cols=63 Identities=29% Similarity=0.411 Sum_probs=38.7
Q ss_pred hHHHHHHHhcCCcEEEEEecCCC----hHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCCcceeEeec
Q 046086 225 VLNFQSKRFTRKKVLIVFDDVTH----LKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCLVDQIYEVK 289 (966)
Q Consensus 225 ~~~~l~~~L~~k~~LlVLDdv~~----~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 289 (966)
....+.+++.++ =+-|||.=+. ..|++-+.....-...|+.|||.|-++-++. +....+|+..
T Consensus 136 f~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~ 202 (233)
T COG3910 136 FLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEIS 202 (233)
T ss_pred HHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEe
Confidence 345555565544 4678898643 3566555443333357899999999985544 3555566654
No 447
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.95 E-value=0.22 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|.|++|+||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988753
No 448
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.95 E-value=0.044 Score=53.29 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
-|.++||.|.||||+.+.+++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 488999999999999999999876555
No 449
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.93 E-value=0.21 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|.|+|++|.||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 450
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.91 E-value=0.072 Score=50.74 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=26.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 190 (966)
++|.|+|..|+|||||++.+.+.+.++ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999988754 44333443
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.90 E-value=0.044 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEeecCCCchhHHHHHHHHHhhc
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998754
No 452
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.89 E-value=0.38 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=22.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|..|.|||||++.++-..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4589999999999999999998653
No 453
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.7 Score=48.30 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=39.0
Q ss_pred CccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 132 KELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.++-|.+...+.|.+..-. .....|-|.++|++|.||+-||++|+.+...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 5677888888888876542 1223577999999999999999999987543
No 454
>PRK13946 shikimate kinase; Provisional
Probab=93.87 E-value=0.044 Score=55.13 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+.|.++|++|.||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999874
No 455
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.84 E-value=0.34 Score=48.76 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=58.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhc---cCC--ceEEEEeehhhhcc-CCHHHHHHHHHHHHhCCCCCCCChhhhHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSR---HFE--GSYFAHNVQEAQEN-GGLAHLRQQLLSTLLNDRNVKNSPNIVLNF 228 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~---~F~--~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 228 (966)
..-..|.|++|+|||||.+.++.-++. +|- .++.++..++.... .+..+......-++... ......+
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~------cpk~~gm 210 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP------CPKAEGM 210 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc------chHHHHH
Confidence 344789999999999999999986543 342 23333322111100 00001100000111111 1111122
Q ss_pred HHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 229 QSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 229 l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
+...-.-.+=++|+|.+-..++..++...+ ..|.++|.|...-
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 222223456799999998888776666554 3788887776544
No 456
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.80 E-value=0.0065 Score=71.53 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=32.4
Q ss_pred cccccceecccCCCCCCCC---CCCCCCccCcEEeccCc-cCCcccc----ccccCCCcccEEeccCCC
Q 046086 564 NLVNIKEIDLHGSKQLSKL---PDLSQARNLERLKLDGC-SSLMETH----SSIQYLNKLEVLDLRLCE 624 (966)
Q Consensus 564 ~l~~L~~L~Ls~n~~~~~~---p~l~~l~~L~~L~L~~~-~~~~~~~----~~l~~l~~L~~L~L~~n~ 624 (966)
.+++|+.|.+..+...... +.....++|+.|++++| ......+ .....+++|+.|+++.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3677777777776555442 22455677777777763 2211111 123344556666666554
No 457
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.80 E-value=0.083 Score=57.49 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=29.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.|++.+.|.||+||||+|.+.+-........+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998888776665554443
No 458
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.79 E-value=0.047 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEeecCCCchhHHHHHHHHHhh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 459
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.79 E-value=0.53 Score=50.62 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-.+++|+|..|.|||||++.++..+. ..+.+++.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~ 63 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQID 63 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEEC
Confidence 34799999999999999999987653 24555543
No 460
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.79 E-value=0.045 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+|.|.|++|.||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 461
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.78 E-value=0.042 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 462
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.77 E-value=0.28 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 457999999999999999999875
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.74 E-value=0.074 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 464
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.73 E-value=0.043 Score=56.86 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
+|||.|..|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 465
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.35 Score=51.31 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|..|.|||||++.++-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999998654
No 466
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.47 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
-.+++|+|..|.|||||++.++-...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35799999999999999999987543
No 467
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.68 E-value=0.078 Score=63.30 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=53.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
+...+.++|.+..++.|...+..+ +.+.++|.+|.||||+|+.+++.+.. .++...|..+ .......+.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~ 97 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIR 97 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHH
Confidence 444567899999999888877543 46899999999999999999987653 3577778775 3334444444
Q ss_pred HHHH
Q 046086 207 QLLS 210 (966)
Q Consensus 207 ~ll~ 210 (966)
.+..
T Consensus 98 ~v~~ 101 (637)
T PRK13765 98 TVPA 101 (637)
T ss_pred HHHH
Confidence 4443
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.67 E-value=0.044 Score=52.10 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
.++|+|+.|+|||||++.++..+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998765443
No 469
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.64 E-value=0.36 Score=49.09 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEeecCCCchhHHHHHHHH
Q 046086 157 KLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~ 177 (966)
+++|+|..|.|||||++.++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 470
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.64 E-value=0.076 Score=55.11 Aligned_cols=25 Identities=24% Similarity=-0.049 Sum_probs=21.8
Q ss_pred CCceEEEEeecCCCchhHHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
.+.+++.|+|+.|.||||+.+.+..
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 3567899999999999999998875
No 471
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.64 E-value=0.082 Score=58.67 Aligned_cols=51 Identities=29% Similarity=0.246 Sum_probs=40.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCce
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGS 186 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 186 (966)
..++|.++.+..+...+..+. -+.+.|.+|+|||+||+.++..+...|-.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 348898888888777765543 488999999999999999999887555433
No 472
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.61 E-value=0.054 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+|.|-|++|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999764
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.61 E-value=0.79 Score=55.51 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++++++|+.|+||||.+..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998664
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.61 E-value=0.5 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEeecCCCchhHHHHHHHHHh
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~ 179 (966)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 475
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.61 E-value=0.35 Score=53.43 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.8
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh--c----cCCceEEEE
Q 046086 137 VECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS--R----HFEGSYFAH 190 (966)
Q Consensus 137 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~----~F~~~~~~~ 190 (966)
...-...|.++|..+-....++-|.|.+|+|||++|..++-... . .-..++|++
T Consensus 105 i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 105 ITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred eCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 33445667777765555677899999999999999998875322 1 112578887
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.60 E-value=0.053 Score=54.28 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++++|.|+.|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 477
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.57 E-value=0.083 Score=53.16 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHH
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
...++|.+.....++-.... .+-+.+.|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 35688988888877766643 35689999999999999999986
No 478
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.57 E-value=0.086 Score=54.15 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=27.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG 185 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 185 (966)
....|.++||+|.||||..++++..+..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 45578899999999999999999888777654
No 479
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.56 E-value=0.27 Score=59.52 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-..++|+|..|.|||||++.+...+
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3579999999999999999997643
No 480
>PRK14528 adenylate kinase; Provisional
Probab=93.56 E-value=0.19 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+.|.|.|++|.||||+|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998775
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.53 E-value=0.049 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 482
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.46 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|..|.|||||.+.++-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 357999999999999999999864
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.1 Score=50.41 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
....+|-+.|.+|.||||||.++++++..+--.+..++
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34568999999999999999999999877665554443
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.51 E-value=0.76 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.-.+++|.|..|.|||||++.++-..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 34589999999999999999998744
No 485
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.2 Score=50.59 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=37.3
Q ss_pred hhHHHHHHHhcCCcEEEEEecCCChHHHHHHh---cccC-CCCCCcEEEEEeCchhhhhcCCcceeE
Q 046086 224 IVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLI---GRID-WLASGSRIIITTRDKHVLSNCLVDQIY 286 (966)
Q Consensus 224 ~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~---~~~~-~~~~gs~IIiTTR~~~v~~~~~~~~~~ 286 (966)
.....+.+.+--++=+.|||..|+--+++++. .... -..+|+-++|.|....++....++.++
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33445555555677799999887643333221 1111 114577777777777788876666554
No 486
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.47 E-value=0.062 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+.|.|+|+.|.||||+|+.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998763
No 487
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.45 E-value=0.084 Score=59.88 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHhhhc-------C-----C--CCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 132 KELVGVECPINEIESLLRT-------G-----S--AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~-------~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..+||.+..++.+...+.. . . ..-+.+.++|++|+|||++|+.++..+...|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 3478998888877554410 0 0 0125689999999999999999998764433
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.45 E-value=0.08 Score=53.24 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
.|++.|+|+.|+|||||++.+..+...+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999988888544333
No 489
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.44 E-value=0.51 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|..|.|||||++.++-.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 490
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.44 E-value=0.37 Score=54.90 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=51.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC-----CCCC-hh------
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN-----VKNS-PN------ 223 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~~~-~~------ 223 (966)
..++|.|.+|+|||||+..++.....+...++-+..+.+ +......+.+++...-..... ..+. ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 469999999999999999998876554333333333433 223344455555432111100 0111 11
Q ss_pred hhHHHHHHHh---cCCcEEEEEecCCChH
Q 046086 224 IVLNFQSKRF---TRKKVLIVFDDVTHLK 249 (966)
Q Consensus 224 ~~~~~l~~~L---~~k~~LlVLDdv~~~~ 249 (966)
...-.+.+++ +++.+|+++||+....
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 1112233444 6799999999995543
No 491
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.43 E-value=0.29 Score=59.18 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-..++|+|..|.|||||++.+...+ . .++.+.++
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~ 409 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKIN 409 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEEC
Confidence 4579999999999999999998765 3 34555443
No 492
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.41 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4589999999999999999998643
No 493
>PRK14530 adenylate kinase; Provisional
Probab=93.40 E-value=0.06 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|.|+|++|.||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 494
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.38 E-value=0.33 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.084 Sum_probs=21.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999999763
No 495
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.37 E-value=0.12 Score=61.98 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=44.6
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEee
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNV 192 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 192 (966)
.+.++|.+..++.+...+..+ +.+.++|++|+||||+|+.+++.+... |...+++.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 356899999888888887643 356799999999999999999987654 4555566543
No 496
>PRK13975 thymidylate kinase; Provisional
Probab=93.35 E-value=0.066 Score=54.48 Aligned_cols=26 Identities=35% Similarity=0.274 Sum_probs=23.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998864
No 497
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.34 E-value=0.24 Score=55.30 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=55.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccC-Cce-EEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGS-YFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..+.|.|+.|.||||+++.+++.+.... +.. +-+.+-.+... .....+.. . .......+.......++..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~----~--~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLP----P--AQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeec----c--cccccCCCccCHHHHHHHhh
Confidence 4688999999999999999988775433 223 33322211110 00000000 0 00000112224456788889
Q ss_pred cCCcEEEEEecCCChHHHHHHhc
Q 046086 234 TRKKVLIVFDDVTHLKQIEFLIG 256 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~~~~~l~~ 256 (966)
+..+=.|+++.+.+.+.++..+.
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHH
Confidence 99999999999999988775443
No 498
>PRK05439 pantothenate kinase; Provisional
Probab=93.33 E-value=0.096 Score=56.70 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
...-+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999887654
No 499
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.30 E-value=0.085 Score=61.51 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=43.8
Q ss_pred cCCCCccccccchHHHHHHhhhc---CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 128 ENDNKELVGVECPINEIESLLRT---GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
|....+++--.+-++++..||.. +....+++.+.|++|.||||.++.+++++. |+..-|.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 44455566666777888888863 333467999999999999999999999763 4444454
No 500
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.30 E-value=0.086 Score=51.88 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=25.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..++++|+|..|.|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999887653
Done!