Query 046086
Match_columns 966
No_of_seqs 992 out of 6171
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.2E-41 1.1E-45 399.4 22.3 299 135-445 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-35 8.2E-40 386.6 22.1 307 126-444 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.8E-35 6.1E-40 352.1 16.2 278 132-437 128-436 (1221)
4 3jrn_A AT1G72930 protein; TIR 100.0 1.9E-35 6.5E-40 285.6 9.0 126 1-128 49-175 (176)
5 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-33 4.3E-38 339.6 23.1 342 126-482 118-508 (591)
6 3ozi_A L6TR; plant TIR domain, 100.0 6.7E-35 2.3E-39 285.5 8.2 125 1-125 76-202 (204)
7 3rgz_A Protein brassinosteroid 100.0 2.2E-31 7.7E-36 329.3 19.9 320 489-830 308-711 (768)
8 3rgz_A Protein brassinosteroid 100.0 3.3E-30 1.1E-34 318.9 20.3 279 490-773 238-556 (768)
9 3t6q_A CD180 antigen; protein- 100.0 1.2E-28 4E-33 297.8 29.3 337 478-830 37-456 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 9.1E-29 3.1E-33 295.0 23.5 337 473-831 27-481 (549)
11 4eco_A Uncharacterized protein 100.0 2.7E-29 9.2E-34 303.6 17.2 285 532-830 192-543 (636)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-28 2.3E-32 301.4 29.8 386 479-885 29-566 (844)
13 3vq2_A TLR4, TOLL-like recepto 100.0 9.2E-28 3.1E-32 289.9 28.1 204 612-830 306-528 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 5.8E-28 2E-32 296.7 25.6 304 495-831 487-835 (876)
15 4eco_A Uncharacterized protein 100.0 2.3E-28 8E-33 295.4 21.7 309 491-831 239-595 (636)
16 4ecn_A Leucine-rich repeat pro 100.0 1.9E-27 6.6E-32 292.1 29.3 316 491-831 440-814 (876)
17 3t6q_A CD180 antigen; protein- 100.0 2.4E-27 8.1E-32 286.3 27.8 329 489-830 95-507 (606)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-28 1.9E-32 286.1 21.1 334 473-830 22-451 (520)
19 3v47_A TOLL-like receptor 5B a 100.0 3.1E-27 1E-31 274.8 25.0 311 473-802 31-407 (455)
20 2z63_A TOLL-like receptor 4, v 100.0 1.7E-27 5.9E-32 285.3 22.8 164 479-646 33-210 (570)
21 2z7x_B TOLL-like receptor 1, v 99.9 9E-27 3.1E-31 275.7 25.5 323 478-830 4-428 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-26 5.1E-31 276.3 25.1 306 473-802 53-509 (562)
23 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-26 8.4E-31 287.2 27.7 281 477-768 7-375 (844)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-26 7E-31 275.1 25.3 329 477-831 34-505 (562)
25 3o6n_A APL1; leucine-rich repe 99.9 4E-26 1.4E-30 259.6 26.4 292 480-802 51-351 (390)
26 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-26 7.5E-31 277.8 24.9 339 473-830 33-504 (606)
27 3v47_A TOLL-like receptor 5B a 99.9 1.3E-26 4.6E-31 269.4 22.2 308 499-832 30-404 (455)
28 2z63_A TOLL-like receptor 4, v 99.9 3.4E-26 1.2E-30 274.1 25.6 335 473-830 53-501 (570)
29 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-26 2.2E-30 262.2 27.0 288 494-802 59-386 (457)
30 2id5_A Lingo-1, leucine rich r 99.9 2.5E-26 8.6E-31 268.7 23.8 285 478-769 36-334 (477)
31 3oja_B Anopheles plasmodium-re 99.9 5.5E-26 1.9E-30 273.0 26.4 293 479-802 56-357 (597)
32 1o6v_A Internalin A; bacterial 99.9 1.1E-25 3.7E-30 262.3 27.5 324 473-830 47-382 (466)
33 4fmz_A Internalin; leucine ric 99.9 1.7E-25 5.8E-30 250.2 28.1 297 473-802 45-345 (347)
34 3bz5_A Internalin-J, INLJ; leu 99.9 4.8E-26 1.7E-30 263.3 23.4 298 493-830 36-346 (457)
35 2id5_A Lingo-1, leucine rich r 99.9 7.2E-26 2.5E-30 264.9 24.5 265 523-802 56-332 (477)
36 4fmz_A Internalin; leucine ric 99.9 2.3E-25 7.7E-30 249.2 26.4 299 494-830 39-340 (347)
37 1ziw_A TOLL-like receptor 3; i 99.9 8.1E-26 2.8E-30 276.7 22.8 343 473-830 26-437 (680)
38 2z81_A CD282 antigen, TOLL-lik 99.9 6.6E-26 2.3E-30 270.2 20.7 337 472-831 50-505 (549)
39 3o6n_A APL1; leucine-rich repe 99.9 3.2E-25 1.1E-29 252.1 23.8 299 497-834 43-350 (390)
40 1ziw_A TOLL-like receptor 3; i 99.9 9.9E-25 3.4E-29 267.0 29.7 101 591-691 250-363 (680)
41 1jl5_A Outer protein YOPM; leu 99.9 5.5E-25 1.9E-29 254.2 24.8 285 499-824 91-384 (454)
42 1xku_A Decorin; proteoglycan, 99.9 9.8E-25 3.3E-29 242.2 24.6 258 499-767 31-305 (330)
43 1o6v_A Internalin A; bacterial 99.9 1.2E-24 4E-29 253.5 24.7 306 472-802 68-387 (466)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-24 3.9E-29 241.8 23.2 259 499-768 33-307 (332)
45 3oja_B Anopheles plasmodium-re 99.9 7.4E-25 2.5E-29 263.2 22.9 296 497-831 49-353 (597)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.7E-30 246.7 14.8 243 543-802 50-303 (313)
47 4fcg_A Uncharacterized protein 99.9 7E-25 2.4E-29 242.5 20.2 218 542-765 80-311 (328)
48 1jl5_A Outer protein YOPM; leu 99.9 6.1E-24 2.1E-28 245.5 28.7 288 498-823 110-422 (454)
49 1xku_A Decorin; proteoglycan, 99.9 2E-24 6.7E-29 239.7 23.5 288 523-830 31-326 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-24 4.1E-29 241.6 21.2 287 523-830 33-327 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 2E-25 6.9E-30 245.3 12.3 244 524-772 51-308 (313)
52 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-23 4.2E-28 255.2 23.6 125 478-606 56-190 (635)
53 4fcg_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 231.5 18.9 212 564-782 79-304 (328)
54 4g8a_A TOLL-like receptor 4; l 99.9 5E-23 1.7E-27 249.8 22.6 125 499-626 52-186 (635)
55 3zyi_A Leucine-rich repeat-con 99.9 9.9E-23 3.4E-27 236.2 23.1 239 525-768 56-303 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 1.1E-22 3.7E-27 235.1 22.4 239 525-768 45-292 (440)
57 2z66_A Variable lymphocyte rec 99.9 2.5E-23 8.4E-28 228.2 14.8 239 527-769 11-262 (306)
58 2z80_A TOLL-like receptor 2, v 99.9 3.3E-23 1.1E-27 232.1 15.4 240 528-768 36-290 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-22 1.2E-26 237.8 24.5 264 478-778 44-307 (622)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-22 5.9E-27 240.3 21.6 268 499-822 40-307 (622)
61 2z66_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 223.4 17.4 220 547-772 11-240 (306)
62 2z80_A TOLL-like receptor 2, v 99.9 1.1E-22 3.7E-27 228.0 16.9 269 498-772 30-318 (353)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-22 9E-27 217.6 17.3 218 526-768 14-238 (285)
64 3zyj_A Leucine-rich repeat-con 99.9 2.8E-21 9.5E-26 223.2 24.4 238 501-745 45-292 (440)
65 3zyi_A Leucine-rich repeat-con 99.9 2.7E-21 9.4E-26 224.1 24.0 238 501-745 56-303 (452)
66 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-21 1.7E-25 207.4 22.1 201 545-772 13-218 (285)
67 1wwl_A Monocyte differentiatio 99.9 1.1E-22 3.6E-27 223.7 7.7 237 524-769 44-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.8 8E-22 2.7E-26 217.2 9.9 237 525-775 12-258 (317)
69 1z7x_W Ribonuclease inhibitor; 99.8 6.4E-23 2.2E-27 238.7 -1.1 277 494-770 23-356 (461)
70 1wwl_A Monocyte differentiatio 99.8 1.3E-21 4.6E-26 214.9 8.1 241 541-802 41-308 (312)
71 3oja_A Leucine-rich immune mol 99.8 1.1E-20 3.8E-25 220.3 14.6 221 541-775 32-258 (487)
72 3o53_A Protein LRIM1, AGAP0063 99.8 9.7E-22 3.3E-26 216.5 4.7 230 524-767 35-274 (317)
73 3oja_A Leucine-rich immune mol 99.8 7.2E-21 2.5E-25 221.9 12.3 237 557-826 21-265 (487)
74 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-22 4.4E-27 236.2 -3.2 320 499-831 3-406 (461)
75 2z62_A TOLL-like receptor 4, v 99.8 1.4E-19 4.7E-24 195.1 19.2 219 527-771 11-240 (276)
76 3rfs_A Internalin B, repeat mo 99.8 5.7E-20 1.9E-24 197.6 10.3 207 541-780 39-247 (272)
77 2z62_A TOLL-like receptor 4, v 99.8 7E-19 2.4E-23 189.6 18.1 203 514-716 19-235 (276)
78 3rfs_A Internalin B, repeat mo 99.8 3E-19 1E-23 191.9 14.6 213 541-786 17-232 (272)
79 1p9a_G Platelet glycoprotein I 99.8 2.2E-18 7.5E-23 186.7 20.7 173 590-768 32-208 (290)
80 4ay9_X Follicle-stimulating ho 99.8 6.8E-19 2.3E-23 196.5 17.2 231 526-764 12-255 (350)
81 1h6u_A Internalin H; cell adhe 99.8 1E-18 3.6E-23 191.2 17.5 193 563-769 38-231 (308)
82 2o6q_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 183.5 20.7 196 524-745 17-218 (270)
83 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.1E-24 201.7 9.6 250 544-822 48-316 (336)
84 2o6q_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 181.1 21.9 201 543-771 16-221 (270)
85 4glp_A Monocyte differentiatio 99.8 7.9E-19 2.7E-23 192.5 14.6 197 565-768 90-307 (310)
86 2ca6_A RAN GTPase-activating p 99.8 3.6E-20 1.2E-24 210.1 2.1 231 540-771 29-319 (386)
87 1p9a_G Platelet glycoprotein I 99.8 6.8E-18 2.3E-22 182.9 19.4 190 525-717 12-207 (290)
88 2ast_B S-phase kinase-associat 99.8 1.1E-19 3.9E-24 201.8 4.0 230 543-777 70-315 (336)
89 1h6u_A Internalin H; cell adhe 99.8 9.8E-18 3.4E-22 183.4 17.9 198 540-750 38-235 (308)
90 2xwt_C Thyrotropin receptor; s 99.7 5.8E-18 2E-22 178.1 14.6 99 662-765 134-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.1E-22 175.0 16.6 207 552-788 20-238 (239)
92 3cvr_A Invasion plasmid antige 99.7 1.2E-17 4.2E-22 196.2 14.2 187 500-704 60-253 (571)
93 2ca6_A RAN GTPase-activating p 99.7 6.6E-19 2.3E-23 199.6 2.4 246 544-802 10-315 (386)
94 4glp_A Monocyte differentiatio 99.7 1.7E-17 6E-22 181.8 12.9 200 587-802 89-306 (310)
95 3cvr_A Invasion plasmid antige 99.7 4.6E-17 1.6E-21 191.2 15.8 192 544-778 60-253 (571)
96 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.4E-21 178.9 17.5 231 545-783 11-253 (350)
97 3m19_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 167.6 18.8 175 544-745 15-192 (251)
98 3ogk_B Coronatine-insensitive 99.7 2.2E-18 7.6E-23 207.1 4.1 304 495-802 160-525 (592)
99 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.1E-23 207.9 3.3 321 496-831 109-496 (592)
100 3goz_A Leucine-rich repeat-con 99.7 2.2E-18 7.4E-23 193.5 1.9 243 528-770 3-299 (362)
101 3goz_A Leucine-rich repeat-con 99.7 4.5E-18 1.5E-22 190.9 2.6 250 547-802 2-296 (362)
102 1m9s_A Internalin B; cell inva 99.7 2.7E-16 9.3E-21 186.8 17.2 195 540-770 18-212 (605)
103 2qen_A Walker-type ATPase; unk 99.7 1.3E-15 4.5E-20 169.9 21.5 290 126-437 6-348 (350)
104 3h16_A TIR protein; bacteria T 99.7 7.3E-18 2.5E-22 162.9 2.4 77 1-77 60-136 (154)
105 3m19_A Variable lymphocyte rec 99.7 2.1E-15 7.1E-20 159.8 19.6 177 566-770 14-194 (251)
106 1h6t_A Internalin B; cell adhe 99.7 4.9E-16 1.7E-20 168.4 14.4 193 541-769 22-214 (291)
107 2fna_A Conserved hypothetical 99.6 8.2E-16 2.8E-20 172.0 15.8 290 126-437 7-356 (357)
108 2p1m_B Transport inhibitor res 99.6 4.7E-18 1.6E-22 204.4 -4.5 32 543-574 211-243 (594)
109 1dce_A Protein (RAB geranylger 99.6 1.7E-18 5.8E-23 204.6 -10.2 202 541-773 347-551 (567)
110 1m9s_A Internalin B; cell inva 99.6 3.8E-16 1.3E-20 185.6 9.6 103 540-647 40-142 (605)
111 2o6s_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 153.8 14.0 171 527-727 11-187 (208)
112 2o6s_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 152.1 14.8 164 513-682 18-190 (208)
113 4ezg_A Putative uncharacterize 99.6 2.2E-15 7.5E-20 153.2 11.5 151 540-716 41-192 (197)
114 1h6t_A Internalin B; cell adhe 99.6 2.6E-15 8.9E-20 162.6 12.3 165 544-717 47-212 (291)
115 1xeu_A Internalin C; cellular 99.6 1E-15 3.5E-20 163.1 8.7 174 540-749 16-189 (263)
116 2p1m_B Transport inhibitor res 99.6 6E-17 2.1E-21 194.6 -1.3 34 564-597 209-243 (594)
117 1w5s_A Origin recognition comp 99.6 3.5E-14 1.2E-18 162.2 19.5 280 131-423 21-371 (412)
118 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.3E-19 146.9 13.6 153 586-768 41-194 (197)
119 2xot_A Amphoterin-induced prot 99.5 3E-14 1E-18 159.4 12.3 76 547-624 22-99 (361)
120 2xot_A Amphoterin-induced prot 99.5 3.5E-14 1.2E-18 159.0 12.4 170 526-717 21-201 (361)
121 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 143.3 16.0 148 545-717 21-171 (229)
122 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.7E-18 143.2 13.9 147 547-717 15-165 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.6E-18 142.5 14.6 149 526-696 14-168 (220)
124 2qby_B CDC6 homolog 3, cell di 99.5 3.2E-12 1.1E-16 144.4 26.7 274 132-423 20-339 (384)
125 1dce_A Protein (RAB geranylger 99.5 5.6E-16 1.9E-20 183.1 -5.3 196 523-762 349-567 (567)
126 2v9t_B SLIT homolog 2 protein 99.5 2.1E-13 7.1E-18 141.1 14.2 146 527-694 15-165 (220)
127 2v9t_B SLIT homolog 2 protein 99.5 2.4E-13 8.1E-18 140.6 14.5 148 545-717 13-164 (220)
128 3e6j_A Variable lymphocyte rec 99.5 3E-13 1E-17 140.9 15.4 126 639-768 22-148 (229)
129 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.6E-19 177.7 4.3 210 523-768 173-404 (727)
130 1xeu_A Internalin C; cellular 99.5 5.9E-14 2E-18 149.5 9.4 164 523-717 19-184 (263)
131 2qby_A CDC6 homolog 1, cell di 99.5 1.9E-12 6.6E-17 146.2 20.8 283 130-423 18-348 (386)
132 2v1u_A Cell division control p 99.5 1.9E-11 6.4E-16 138.1 28.7 279 131-423 18-351 (387)
133 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.8E-18 168.6 6.1 143 540-691 221-369 (727)
134 1w8a_A SLIT protein; signaling 99.4 2E-12 6.8E-17 130.6 13.3 130 639-772 11-143 (192)
135 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 9.8E-17 129.4 13.5 126 639-768 13-139 (193)
136 1w8a_A SLIT protein; signaling 99.4 2.8E-12 9.5E-17 129.5 13.0 126 526-651 11-141 (192)
137 3ub2_A TOLL/interleukin-1 rece 99.3 5.1E-14 1.7E-18 133.6 -1.1 87 1-91 51-145 (146)
138 3sb4_A Hypothetical leucine ri 99.3 2.6E-12 8.8E-17 141.8 12.1 250 498-761 48-327 (329)
139 2wfh_A SLIT homolog 2 protein 99.3 6.2E-12 2.1E-16 127.0 13.4 122 526-648 13-138 (193)
140 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 125.5 11.4 104 659-767 50-159 (168)
141 2je0_A Acidic leucine-rich nuc 99.3 2.9E-12 1E-16 123.5 10.1 100 660-763 44-148 (149)
142 2ell_A Acidic leucine-rich nuc 99.3 6.5E-12 2.2E-16 123.8 11.5 58 659-716 96-158 (168)
143 2je0_A Acidic leucine-rich nuc 99.3 5E-12 1.7E-16 121.9 9.9 109 659-772 18-130 (149)
144 1fnn_A CDC6P, cell division co 99.3 5.2E-11 1.8E-15 134.6 19.4 282 131-423 16-351 (389)
145 2o6r_A Variable lymphocyte rec 99.3 2.3E-11 7.9E-16 121.0 13.5 131 638-772 9-141 (177)
146 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-11 4.6E-16 122.6 10.5 104 659-767 43-152 (176)
147 1njg_A DNA polymerase III subu 99.2 1.4E-10 4.7E-15 121.6 17.2 200 128-339 19-231 (250)
148 2o6r_A Variable lymphocyte rec 99.2 7.3E-11 2.5E-15 117.3 12.9 126 526-652 10-140 (177)
149 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 119.8 8.7 82 541-624 17-99 (176)
150 3sb4_A Hypothetical leucine ri 99.2 7.6E-11 2.6E-15 129.9 12.0 263 498-775 24-317 (329)
151 2chg_A Replication factor C sm 99.1 6.3E-10 2.2E-14 114.7 15.5 188 128-336 13-204 (226)
152 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 112.5 11.4 106 660-770 11-117 (170)
153 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 112.1 11.5 103 660-768 14-118 (174)
154 4fdw_A Leucine rich hypothetic 99.1 2.4E-09 8.1E-14 120.7 19.8 210 543-766 157-381 (401)
155 4fdw_A Leucine rich hypothetic 99.1 4.8E-09 1.6E-13 118.2 21.0 210 543-769 135-359 (401)
156 1ds9_A Outer arm dynein; leuci 99.1 4.2E-12 1.4E-16 128.9 -4.1 123 585-711 44-180 (198)
157 1ds9_A Outer arm dynein; leuci 99.0 4.4E-12 1.5E-16 128.7 -6.1 131 605-767 40-184 (198)
158 3g39_A Variable lymphocyte rec 99.0 9.1E-10 3.1E-14 108.5 10.7 98 527-624 13-113 (170)
159 1sxj_B Activator 1 37 kDa subu 99.0 1.9E-09 6.6E-14 118.2 14.4 186 128-336 17-210 (323)
160 2r9u_A Variable lymphocyte rec 99.0 1.5E-09 5E-14 107.4 10.5 99 526-624 15-116 (174)
161 2j67_A TOLL like receptor 10; 98.9 1.4E-10 4.7E-15 113.7 1.3 57 1-57 77-134 (178)
162 1fyx_A TOLL-like receptor 2; b 98.9 7.6E-11 2.6E-15 112.5 -0.6 62 1-62 47-110 (149)
163 1t3g_A X-linked interleukin-1 98.9 8E-10 2.7E-14 106.4 4.8 60 1-60 54-115 (159)
164 2js7_A Myeloid differentiation 98.9 1.5E-10 5E-15 111.7 -1.5 59 1-59 57-117 (160)
165 1iqp_A RFCS; clamp loader, ext 98.9 1.1E-08 3.7E-13 112.4 13.1 188 128-337 21-213 (327)
166 2ifg_A High affinity nerve gro 98.8 8.1E-09 2.8E-13 114.5 10.5 74 641-715 13-90 (347)
167 3un9_A NLR family member X1; l 98.8 4.7E-10 1.6E-14 125.3 -0.0 41 676-716 178-222 (372)
168 1hqc_A RUVB; extended AAA-ATPa 98.8 1.8E-07 6.2E-12 102.5 19.5 259 128-432 8-307 (324)
169 3un9_A NLR family member X1; l 98.8 1.7E-09 5.8E-14 120.7 2.6 108 659-769 127-253 (372)
170 4fs7_A Uncharacterized protein 98.7 4.5E-07 1.5E-11 102.3 21.4 255 487-763 59-328 (394)
171 2ra8_A Uncharacterized protein 98.7 1.2E-08 4E-13 112.9 7.1 133 635-768 171-320 (362)
172 2chq_A Replication factor C sm 98.6 3.7E-07 1.3E-11 99.6 15.7 182 128-335 13-203 (319)
173 4fs7_A Uncharacterized protein 98.6 9.4E-07 3.2E-11 99.6 19.2 268 471-764 70-352 (394)
174 2ifg_A High affinity nerve gro 98.6 6.5E-08 2.2E-12 107.2 9.3 101 546-648 11-115 (347)
175 1jr3_A DNA polymerase III subu 98.6 2.7E-07 9.2E-12 103.3 14.4 196 128-336 12-221 (373)
176 3h4m_A Proteasome-activating n 98.6 8.5E-07 2.9E-11 95.1 16.8 181 128-334 13-229 (285)
177 1jbk_A CLPB protein; beta barr 98.5 3.2E-07 1.1E-11 91.7 11.7 51 129-181 19-69 (195)
178 3bos_A Putative DNA replicatio 98.5 3E-07 1E-11 95.8 11.1 174 130-336 26-217 (242)
179 3d8b_A Fidgetin-like protein 1 98.5 2E-06 6.9E-11 95.2 17.9 205 106-337 61-296 (357)
180 3te6_A Regulatory protein SIR3 98.5 7.6E-07 2.6E-11 95.6 13.8 165 133-304 21-211 (318)
181 3pfi_A Holliday junction ATP-d 98.5 5E-06 1.7E-10 91.5 20.7 256 128-428 25-319 (338)
182 1sxj_A Activator 1 95 kDa subu 98.5 2E-06 7E-11 100.2 18.0 193 128-335 35-252 (516)
183 1sxj_D Activator 1 41 kDa subu 98.5 1E-05 3.6E-10 89.4 22.0 196 128-335 33-234 (353)
184 2ra8_A Uncharacterized protein 98.4 8.7E-08 3E-12 106.0 4.0 62 558-621 164-227 (362)
185 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.5E-06 1.5E-10 88.1 17.2 182 131-335 5-221 (262)
186 4gt6_A Cell surface protein; l 98.4 1.4E-05 4.7E-10 90.0 21.4 103 489-598 53-169 (394)
187 3eie_A Vacuolar protein sortin 98.4 6.7E-06 2.3E-10 89.7 17.8 185 127-335 13-227 (322)
188 1d2n_A N-ethylmaleimide-sensit 98.4 5.9E-06 2E-10 87.8 16.8 169 132-328 33-229 (272)
189 2z4s_A Chromosomal replication 98.4 1.8E-06 6.1E-11 98.3 13.3 181 131-334 104-304 (440)
190 1sxj_E Activator 1 40 kDa subu 98.3 3.4E-06 1.2E-10 93.5 14.4 198 128-334 10-235 (354)
191 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.5E-05 8.7E-10 84.9 20.0 184 129-336 9-223 (322)
192 2qp9_X Vacuolar protein sortin 98.3 1.7E-05 5.7E-10 87.7 18.7 185 128-336 47-261 (355)
193 3b9p_A CG5977-PA, isoform A; A 98.3 4.4E-06 1.5E-10 90.1 13.8 185 127-336 16-233 (297)
194 4gt6_A Cell surface protein; l 98.3 7.1E-05 2.4E-09 84.1 23.3 130 487-622 75-214 (394)
195 3uk6_A RUVB-like 2; hexameric 98.3 1.3E-05 4.5E-10 89.3 16.9 201 131-335 43-302 (368)
196 3cf0_A Transitional endoplasmi 98.2 2.3E-05 8E-10 84.4 18.0 176 129-330 12-222 (301)
197 1l8q_A Chromosomal replication 98.2 1.1E-05 3.6E-10 88.3 15.2 177 131-331 10-203 (324)
198 3syl_A Protein CBBX; photosynt 98.2 8.1E-06 2.8E-10 88.5 13.6 149 133-305 32-218 (309)
199 4h09_A Hypothetical leucine ri 98.2 0.00014 4.9E-09 81.1 24.2 261 473-764 47-319 (379)
200 2p65_A Hypothetical protein PF 98.2 6.8E-06 2.3E-10 81.5 11.9 51 129-181 19-69 (187)
201 3vfd_A Spastin; ATPase, microt 98.2 2.7E-05 9.3E-10 87.3 17.9 186 127-336 110-326 (389)
202 3u61_B DNA polymerase accessor 98.2 1.9E-05 6.5E-10 86.2 16.2 179 128-332 22-212 (324)
203 2zan_A Vacuolar protein sortin 98.2 4.4E-05 1.5E-09 86.9 18.7 186 127-335 129-344 (444)
204 3pvs_A Replication-associated 98.1 2E-05 6.8E-10 89.5 15.4 178 128-334 22-213 (447)
205 3n70_A Transport activator; si 98.0 1.7E-05 5.7E-10 75.3 8.5 48 133-180 2-49 (145)
206 1lv7_A FTSH; alpha/beta domain 97.9 0.00012 4E-09 76.9 15.5 154 129-304 9-195 (257)
207 3hu3_A Transitional endoplasmi 97.9 7.2E-05 2.5E-09 85.7 14.5 172 131-328 203-406 (489)
208 4b4t_J 26S protease regulatory 97.9 0.0002 6.8E-09 78.8 17.1 174 130-329 146-354 (405)
209 1io0_A Tropomodulin; LRR prote 97.9 7.5E-06 2.6E-10 81.4 4.9 106 659-767 37-163 (185)
210 1sxj_C Activator 1 40 kDa subu 97.9 0.00026 8.9E-09 77.7 17.9 182 128-331 21-207 (340)
211 1a5t_A Delta prime, HOLB; zinc 97.9 0.00024 8.3E-09 77.6 17.4 181 138-336 8-205 (334)
212 4b4t_L 26S protease subunit RP 97.9 0.00021 7.1E-09 79.9 16.8 174 130-329 179-387 (437)
213 2r62_A Cell division protease 97.8 1.6E-05 5.3E-10 84.3 6.3 154 129-304 8-196 (268)
214 3pxg_A Negative regulator of g 97.8 0.00011 3.9E-09 84.1 13.4 149 129-304 177-338 (468)
215 4b4t_H 26S protease regulatory 97.8 0.00035 1.2E-08 77.8 16.6 172 131-328 208-414 (467)
216 2ce7_A Cell division protein F 97.8 0.00026 9.1E-09 80.4 15.9 174 130-329 14-221 (476)
217 4b4t_M 26S protease regulatory 97.8 0.00023 7.7E-09 79.6 15.0 171 130-328 179-386 (434)
218 2w58_A DNAI, primosome compone 97.8 8.3E-05 2.8E-09 74.9 10.6 61 130-190 23-89 (202)
219 3ec2_A DNA replication protein 97.8 0.00011 3.7E-09 72.5 11.1 43 138-180 20-63 (180)
220 4b4t_I 26S protease regulatory 97.8 0.00025 8.6E-09 78.2 14.6 173 130-328 180-387 (437)
221 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.4E-10 82.7 5.4 96 663-761 148-257 (267)
222 4b4t_K 26S protease regulatory 97.7 0.00027 9.1E-09 78.9 14.8 171 131-328 171-378 (428)
223 1in4_A RUVB, holliday junction 97.7 0.00096 3.3E-08 72.8 18.9 174 129-334 22-221 (334)
224 1qvr_A CLPB protein; coiled co 97.7 0.00012 4E-09 90.8 12.0 154 129-303 167-344 (854)
225 1r6b_X CLPA protein; AAA+, N-t 97.7 0.0003 1E-08 86.1 15.7 155 129-304 183-362 (758)
226 3rw6_A Nuclear RNA export fact 97.7 9.5E-06 3.3E-10 84.9 1.8 68 702-773 167-238 (267)
227 1ofh_A ATP-dependent HSL prote 97.7 0.00029 1E-08 76.0 13.2 49 132-180 15-75 (310)
228 4h09_A Hypothetical leucine ri 97.6 0.0031 1E-07 70.2 21.7 248 493-766 40-297 (379)
229 3e4g_A ATP synthase subunit S, 97.6 3.7E-05 1.3E-09 74.5 4.4 86 682-768 62-152 (176)
230 4fcw_A Chaperone protein CLPB; 97.6 0.00037 1.3E-08 75.3 12.7 58 133-190 18-82 (311)
231 3co5_A Putative two-component 97.5 3.9E-05 1.3E-09 72.6 3.5 49 132-180 4-52 (143)
232 3pxi_A Negative regulator of g 97.5 0.00041 1.4E-08 84.8 13.4 149 129-304 177-338 (758)
233 2gno_A DNA polymerase III, gam 97.5 0.00058 2E-08 73.2 12.7 146 136-304 1-152 (305)
234 3e4g_A ATP synthase subunit S, 97.5 3.2E-05 1.1E-09 74.9 2.6 84 544-627 62-153 (176)
235 2kjq_A DNAA-related protein; s 97.5 0.00014 4.7E-09 69.2 6.7 37 154-190 35-71 (149)
236 1ixz_A ATP-dependent metallopr 97.5 0.0025 8.6E-08 66.5 17.1 153 129-304 13-199 (254)
237 2bjv_A PSP operon transcriptio 97.4 0.00044 1.5E-08 72.9 10.7 49 132-180 6-54 (265)
238 1io0_A Tropomodulin; LRR prote 97.4 3.8E-05 1.3E-09 76.2 1.8 66 677-745 89-164 (185)
239 1iy2_A ATP-dependent metallopr 97.4 0.0047 1.6E-07 65.4 18.0 178 127-329 35-245 (278)
240 3cf2_A TER ATPase, transitiona 97.4 0.0013 4.4E-08 79.2 14.8 173 131-329 203-407 (806)
241 2c9o_A RUVB-like 1; hexameric 97.3 0.0012 3.9E-08 75.6 13.0 50 131-180 36-88 (456)
242 1ojl_A Transcriptional regulat 97.3 0.001 3.6E-08 71.4 11.6 48 132-179 2-49 (304)
243 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0041 1.4E-07 71.0 16.1 172 129-329 28-236 (499)
244 3pxi_A Negative regulator of g 97.2 0.0011 3.7E-08 81.1 11.9 150 132-304 491-675 (758)
245 3t15_A Ribulose bisphosphate c 97.2 0.0014 4.6E-08 70.1 11.2 29 154-182 35-63 (293)
246 2x8a_A Nuclear valosin-contain 97.1 0.0046 1.6E-07 65.2 14.3 151 132-304 10-191 (274)
247 1ypw_A Transitional endoplasmi 97.1 0.0025 8.7E-08 77.8 14.0 153 130-304 202-385 (806)
248 3m6a_A ATP-dependent protease 97.1 0.0056 1.9E-07 71.3 15.5 51 132-182 81-135 (543)
249 1um8_A ATP-dependent CLP prote 96.8 0.0048 1.7E-07 68.5 11.0 25 156-180 73-97 (376)
250 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0033 1.1E-07 76.9 9.4 49 132-180 458-513 (758)
251 1g5t_A COB(I)alamin adenosyltr 96.6 0.0052 1.8E-07 60.3 8.8 118 156-274 29-163 (196)
252 2cvh_A DNA repair and recombin 96.6 0.0067 2.3E-07 61.4 10.1 46 142-190 7-52 (220)
253 2qgz_A Helicase loader, putati 96.5 0.006 2E-07 65.5 9.1 61 130-190 122-188 (308)
254 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0031 1.1E-07 66.9 5.7 73 154-248 122-194 (331)
255 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0092 3.2E-07 61.0 8.6 49 142-190 10-58 (235)
256 3lw7_A Adenylate kinase relate 96.2 0.033 1.1E-06 53.8 12.0 23 156-179 2-24 (179)
257 3bh0_A DNAB-like replicative h 96.1 0.028 9.7E-07 60.4 12.0 70 135-211 49-118 (315)
258 3hr8_A Protein RECA; alpha and 96.1 0.017 5.9E-07 62.7 10.3 101 138-247 43-150 (356)
259 4a1f_A DNAB helicase, replicat 96.0 0.016 5.4E-07 62.6 9.2 72 134-212 26-97 (338)
260 1qvr_A CLPB protein; coiled co 96.0 0.0087 3E-07 74.0 7.7 50 132-181 558-614 (854)
261 1j8m_F SRP54, signal recogniti 95.9 0.1 3.5E-06 55.3 14.9 36 155-190 98-133 (297)
262 2r44_A Uncharacterized protein 95.9 0.0035 1.2E-07 68.3 3.5 48 131-182 26-73 (331)
263 1vma_A Cell division protein F 95.9 0.041 1.4E-06 58.7 11.7 51 140-190 83-139 (306)
264 3rfe_A Platelet glycoprotein I 95.9 0.0083 2.8E-07 55.2 5.3 52 527-578 12-67 (130)
265 1xp8_A RECA protein, recombina 95.9 0.026 8.7E-07 61.9 10.0 56 135-190 53-109 (366)
266 2b8t_A Thymidine kinase; deoxy 95.8 0.0044 1.5E-07 62.7 3.5 111 155-275 12-127 (223)
267 3dm5_A SRP54, signal recogniti 95.7 0.13 4.5E-06 57.3 15.0 37 154-190 99-135 (443)
268 1zu4_A FTSY; GTPase, signal re 95.7 0.032 1.1E-06 60.0 9.8 37 154-190 104-140 (320)
269 3rfe_A Platelet glycoprotein I 95.6 0.017 5.8E-07 53.1 6.4 53 709-767 12-67 (130)
270 3cf2_A TER ATPase, transitiona 95.6 0.027 9.4E-07 67.7 10.0 152 131-304 476-661 (806)
271 2px0_A Flagellar biosynthesis 95.5 0.077 2.6E-06 56.3 12.0 37 154-190 104-141 (296)
272 2ehv_A Hypothetical protein PH 95.5 0.032 1.1E-06 57.6 9.0 37 154-190 29-66 (251)
273 2q6t_A DNAB replication FORK h 95.5 0.14 4.6E-06 58.0 14.8 73 134-213 180-253 (444)
274 3jvv_A Twitching mobility prot 95.4 0.017 6E-07 63.0 6.7 110 156-277 124-234 (356)
275 1ypw_A Transitional endoplasmi 95.4 0.006 2.1E-07 74.5 3.3 153 130-304 475-661 (806)
276 1qhx_A CPT, protein (chloramph 95.4 0.0073 2.5E-07 58.9 3.2 25 156-180 4-28 (178)
277 2eyu_A Twitching motility prot 95.4 0.016 5.4E-07 60.5 5.9 112 154-276 24-135 (261)
278 3hws_A ATP-dependent CLP prote 95.4 0.011 3.8E-07 65.1 4.9 48 133-180 16-76 (363)
279 3io5_A Recombination and repai 95.3 0.062 2.1E-06 56.7 10.2 48 142-190 12-65 (333)
280 3kl4_A SRP54, signal recogniti 95.3 0.1 3.5E-06 58.2 12.5 37 154-190 96-132 (433)
281 3c8u_A Fructokinase; YP_612366 95.3 0.016 5.3E-07 58.3 5.4 28 153-180 20-47 (208)
282 2zr9_A Protein RECA, recombina 95.2 0.06 2.1E-06 58.6 10.2 54 137-190 42-96 (349)
283 1pgv_A TMD-1, tropomodulin TMD 95.2 0.021 7.2E-07 56.2 5.8 91 676-766 65-168 (197)
284 1rz3_A Hypothetical protein rb 95.2 0.027 9.3E-07 56.2 6.7 45 137-181 3-48 (201)
285 1jr3_D DNA polymerase III, del 95.2 0.18 6.1E-06 54.8 13.9 155 154-334 17-183 (343)
286 3bgw_A DNAB-like replicative h 95.1 0.37 1.3E-05 54.2 16.6 70 135-211 178-247 (444)
287 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.6E-07 57.3 3.4 25 156-180 2-26 (173)
288 3e70_C DPA, signal recognition 95.0 0.064 2.2E-06 57.7 9.5 29 154-182 128-156 (328)
289 3trf_A Shikimate kinase, SK; a 94.9 0.013 4.5E-07 57.5 3.4 26 155-180 5-30 (185)
290 1u94_A RECA protein, recombina 94.9 0.052 1.8E-06 59.2 8.4 55 136-190 43-98 (356)
291 3vaa_A Shikimate kinase, SK; s 94.9 0.014 4.7E-07 58.2 3.5 26 155-180 25-50 (199)
292 1v5w_A DMC1, meiotic recombina 94.8 0.11 3.7E-06 56.5 10.8 50 141-190 108-163 (343)
293 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.016 5.5E-07 66.2 4.1 45 132-180 22-66 (500)
294 4eun_A Thermoresistant glucoki 94.8 0.061 2.1E-06 53.5 8.0 32 154-190 28-59 (200)
295 3sr0_A Adenylate kinase; phosp 94.7 0.063 2.2E-06 53.6 7.8 88 157-255 2-94 (206)
296 2z43_A DNA repair and recombin 94.7 0.053 1.8E-06 58.6 7.8 50 141-190 93-148 (324)
297 1nks_A Adenylate kinase; therm 94.6 0.03 1E-06 55.2 5.3 26 156-181 2-27 (194)
298 1sky_E F1-ATPase, F1-ATP synth 94.6 0.078 2.7E-06 59.3 9.0 33 157-189 153-186 (473)
299 2ga8_A Hypothetical 39.9 kDa p 94.6 0.023 8E-07 61.1 4.5 47 137-183 4-52 (359)
300 1zuh_A Shikimate kinase; alpha 94.5 0.02 6.7E-07 55.2 3.4 27 154-180 6-32 (168)
301 1odf_A YGR205W, hypothetical 3 94.4 0.034 1.2E-06 58.9 5.4 30 152-181 28-57 (290)
302 2cbz_A Multidrug resistance-as 94.4 0.077 2.6E-06 54.3 7.9 25 155-179 31-55 (237)
303 2xxa_A Signal recognition part 94.4 0.14 4.8E-06 57.4 10.7 37 154-190 99-136 (433)
304 2r6a_A DNAB helicase, replicat 94.4 0.14 4.7E-06 58.1 10.7 68 136-210 185-253 (454)
305 1kag_A SKI, shikimate kinase I 94.4 0.017 5.9E-07 55.9 2.7 25 156-180 5-29 (173)
306 3uie_A Adenylyl-sulfate kinase 94.3 0.039 1.3E-06 54.9 5.2 27 154-180 24-50 (200)
307 2yvu_A Probable adenylyl-sulfa 94.3 0.037 1.3E-06 54.3 5.0 36 154-189 12-47 (186)
308 3iij_A Coilin-interacting nucl 94.3 0.018 6.2E-07 56.2 2.7 25 155-179 11-35 (180)
309 1via_A Shikimate kinase; struc 94.2 0.02 6.8E-07 55.6 2.8 24 157-180 6-29 (175)
310 1ly1_A Polynucleotide kinase; 94.2 0.024 8.1E-07 55.2 3.4 22 156-177 3-24 (181)
311 1rj9_A FTSY, signal recognitio 94.2 0.12 4.1E-06 55.0 9.0 36 154-190 101-136 (304)
312 3b9q_A Chloroplast SRP recepto 94.2 0.12 4E-06 55.0 8.9 36 154-190 99-134 (302)
313 2rhm_A Putative kinase; P-loop 94.2 0.032 1.1E-06 55.0 4.3 25 155-179 5-29 (193)
314 1g8p_A Magnesium-chelatase 38 94.2 0.024 8.3E-07 61.9 3.7 50 129-180 21-70 (350)
315 1xjc_A MOBB protein homolog; s 94.2 0.042 1.4E-06 52.7 4.9 29 154-182 3-31 (169)
316 1kht_A Adenylate kinase; phosp 94.1 0.04 1.4E-06 54.2 4.9 26 156-181 4-29 (192)
317 1ex7_A Guanylate kinase; subst 94.1 0.022 7.4E-07 55.9 2.8 28 156-183 2-29 (186)
318 2iyv_A Shikimate kinase, SK; t 94.1 0.022 7.5E-07 55.8 2.9 25 156-180 3-27 (184)
319 3t61_A Gluconokinase; PSI-biol 94.1 0.023 7.8E-07 56.7 3.0 25 155-179 18-42 (202)
320 3tlx_A Adenylate kinase 2; str 94.0 0.034 1.2E-06 57.3 4.3 26 154-179 28-53 (243)
321 1kgd_A CASK, peripheral plasma 94.0 0.025 8.6E-07 55.3 3.1 26 155-180 5-30 (180)
322 3ice_A Transcription terminati 94.0 0.11 3.8E-06 56.2 8.2 29 155-183 174-202 (422)
323 1zp6_A Hypothetical protein AT 94.0 0.03 1E-06 55.1 3.6 24 155-178 9-32 (191)
324 1knq_A Gluconate kinase; ALFA/ 94.0 0.042 1.4E-06 53.2 4.6 25 155-179 8-32 (175)
325 2pze_A Cystic fibrosis transme 94.0 0.16 5.4E-06 51.7 9.1 25 155-179 34-58 (229)
326 2ze6_A Isopentenyl transferase 93.9 0.029 9.9E-07 58.2 3.5 25 156-180 2-26 (253)
327 2jaq_A Deoxyguanosine kinase; 93.9 0.027 9.1E-07 56.2 3.2 24 157-180 2-25 (205)
328 2c95_A Adenylate kinase 1; tra 93.9 0.031 1.1E-06 55.3 3.5 25 155-179 9-33 (196)
329 2vli_A Antibiotic resistance p 93.8 0.024 8.4E-07 55.3 2.6 26 155-180 5-30 (183)
330 2ewv_A Twitching motility prot 93.8 0.11 3.9E-06 57.0 8.1 111 154-275 135-245 (372)
331 2bdt_A BH3686; alpha-beta prot 93.8 0.046 1.6E-06 53.8 4.6 31 156-190 3-33 (189)
332 1e6c_A Shikimate kinase; phosp 93.8 0.027 9.2E-07 54.5 2.8 25 156-180 3-27 (173)
333 1y63_A LMAJ004144AAA protein; 93.8 0.036 1.2E-06 54.4 3.7 25 154-178 9-33 (184)
334 2og2_A Putative signal recogni 93.7 0.16 5.5E-06 55.2 9.1 35 155-190 157-191 (359)
335 3fwy_A Light-independent proto 93.7 0.054 1.9E-06 58.0 5.3 38 153-190 46-83 (314)
336 1g41_A Heat shock protein HSLU 93.7 0.05 1.7E-06 60.8 5.1 52 132-183 15-78 (444)
337 2plr_A DTMP kinase, probable t 93.7 0.055 1.9E-06 54.2 5.1 28 156-183 5-32 (213)
338 1ukz_A Uridylate kinase; trans 93.7 0.038 1.3E-06 55.1 3.8 27 153-179 13-39 (203)
339 2pjz_A Hypothetical protein ST 93.7 0.25 8.6E-06 51.3 10.1 25 155-179 30-54 (263)
340 2bwj_A Adenylate kinase 5; pho 93.7 0.033 1.1E-06 55.2 3.3 25 156-180 13-37 (199)
341 1nn5_A Similar to deoxythymidy 93.7 0.055 1.9E-06 54.3 5.0 29 155-183 9-37 (215)
342 3tau_A Guanylate kinase, GMP k 93.6 0.038 1.3E-06 55.4 3.6 28 154-181 7-34 (208)
343 1tev_A UMP-CMP kinase; ploop, 93.6 0.038 1.3E-06 54.5 3.6 24 156-179 4-27 (196)
344 2pt5_A Shikimate kinase, SK; a 93.6 0.038 1.3E-06 53.1 3.4 24 157-180 2-25 (168)
345 1tue_A Replication protein E1; 93.6 0.054 1.8E-06 53.4 4.4 43 138-181 42-84 (212)
346 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.071 2.4E-06 57.6 5.9 105 156-275 172-276 (330)
347 3cm0_A Adenylate kinase; ATP-b 93.5 0.038 1.3E-06 54.1 3.4 24 156-179 5-28 (186)
348 1pgv_A TMD-1, tropomodulin TMD 93.5 0.07 2.4E-06 52.5 5.2 87 677-766 37-137 (197)
349 2yhs_A FTSY, cell division pro 93.5 0.22 7.6E-06 56.1 9.9 36 154-190 292-327 (503)
350 2qor_A Guanylate kinase; phosp 93.5 0.035 1.2E-06 55.4 3.1 27 154-180 11-37 (204)
351 2i1q_A DNA repair and recombin 93.5 0.1 3.5E-06 56.2 7.0 39 141-179 84-122 (322)
352 3a00_A Guanylate kinase, GMP k 93.5 0.033 1.1E-06 54.7 2.8 28 156-183 2-29 (186)
353 1q57_A DNA primase/helicase; d 93.4 0.25 8.7E-06 56.8 10.7 55 153-213 240-295 (503)
354 1qf9_A UMP/CMP kinase, protein 93.4 0.045 1.5E-06 53.9 3.7 26 155-180 6-31 (194)
355 2cdn_A Adenylate kinase; phosp 93.4 0.051 1.7E-06 54.1 4.1 26 155-180 20-45 (201)
356 1aky_A Adenylate kinase; ATP:A 93.3 0.041 1.4E-06 55.7 3.3 26 155-180 4-29 (220)
357 2dr3_A UPF0273 protein PH0284; 93.2 0.072 2.5E-06 54.7 5.2 47 144-190 12-58 (247)
358 1uf9_A TT1252 protein; P-loop, 93.2 0.05 1.7E-06 54.1 3.8 26 153-178 6-31 (203)
359 2wwf_A Thymidilate kinase, put 93.2 0.047 1.6E-06 54.7 3.6 28 155-182 10-37 (212)
360 1uj2_A Uridine-cytidine kinase 93.2 0.049 1.7E-06 56.4 3.7 29 153-181 20-48 (252)
361 3umf_A Adenylate kinase; rossm 93.2 0.055 1.9E-06 54.4 3.9 27 153-179 27-53 (217)
362 2if2_A Dephospho-COA kinase; a 93.1 0.045 1.5E-06 54.5 3.3 22 156-177 2-23 (204)
363 2pbr_A DTMP kinase, thymidylat 93.1 0.049 1.7E-06 53.7 3.4 25 157-181 2-26 (195)
364 1n0w_A DNA repair protein RAD5 93.1 0.086 2.9E-06 54.0 5.4 49 142-190 11-65 (243)
365 1cke_A CK, MSSA, protein (cyti 93.1 0.048 1.6E-06 55.4 3.4 25 156-180 6-30 (227)
366 2grj_A Dephospho-COA kinase; T 93.0 0.05 1.7E-06 53.7 3.3 26 154-179 11-36 (192)
367 4a74_A DNA repair and recombin 93.0 0.1 3.4E-06 53.0 5.8 49 142-190 12-66 (231)
368 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.055 1.9E-06 56.4 3.7 26 155-180 4-29 (260)
369 3p32_A Probable GTPase RV1496/ 92.9 0.13 4.6E-06 56.2 6.9 47 143-189 67-113 (355)
370 3ney_A 55 kDa erythrocyte memb 92.9 0.052 1.8E-06 53.6 3.2 27 154-180 18-44 (197)
371 1zak_A Adenylate kinase; ATP:A 92.9 0.049 1.7E-06 55.2 3.1 26 155-180 5-30 (222)
372 1gvn_B Zeta; postsegregational 92.9 0.09 3.1E-06 55.6 5.2 26 154-179 32-57 (287)
373 3k1j_A LON protease, ATP-depen 92.8 0.074 2.5E-06 62.8 5.0 51 129-183 38-88 (604)
374 2v3c_C SRP54, signal recogniti 92.8 0.19 6.6E-06 56.2 8.1 36 155-190 99-134 (432)
375 2qt1_A Nicotinamide riboside k 92.8 0.056 1.9E-06 54.0 3.5 26 154-179 20-45 (207)
376 3tr0_A Guanylate kinase, GMP k 92.8 0.054 1.8E-06 54.0 3.2 24 156-179 8-31 (205)
377 2bbw_A Adenylate kinase 4, AK4 92.7 0.059 2E-06 55.6 3.6 26 155-180 27-52 (246)
378 1zd8_A GTP:AMP phosphotransfer 92.7 0.051 1.8E-06 55.3 3.1 25 155-179 7-31 (227)
379 2bbs_A Cystic fibrosis transme 92.7 0.3 1E-05 51.4 9.1 25 155-179 64-88 (290)
380 1jjv_A Dephospho-COA kinase; P 92.7 0.052 1.8E-06 54.2 3.0 22 156-177 3-24 (206)
381 2j41_A Guanylate kinase; GMP, 92.7 0.061 2.1E-06 53.6 3.5 25 155-179 6-30 (207)
382 3nwj_A ATSK2; P loop, shikimat 92.7 0.049 1.7E-06 56.2 2.8 25 156-180 49-73 (250)
383 3lda_A DNA repair protein RAD5 92.7 0.28 9.6E-06 54.2 9.1 52 139-190 162-219 (400)
384 2pez_A Bifunctional 3'-phospho 92.7 0.11 3.6E-06 50.6 5.1 27 155-181 5-31 (179)
385 3asz_A Uridine kinase; cytidin 92.7 0.071 2.4E-06 53.4 4.0 27 154-180 5-31 (211)
386 3fb4_A Adenylate kinase; psych 92.7 0.06 2E-06 54.2 3.4 23 157-179 2-24 (216)
387 1ye8_A Protein THEP1, hypothet 92.6 0.065 2.2E-06 52.2 3.4 24 157-180 2-25 (178)
388 3l0o_A Transcription terminati 92.6 0.26 8.9E-06 53.3 8.3 27 156-182 176-202 (427)
389 2r2a_A Uncharacterized protein 92.6 0.17 5.8E-06 50.1 6.5 22 157-178 7-28 (199)
390 2hf9_A Probable hydrogenase ni 92.5 0.16 5.6E-06 51.2 6.6 40 141-182 26-65 (226)
391 2z0h_A DTMP kinase, thymidylat 92.5 0.065 2.2E-06 52.9 3.4 25 157-181 2-26 (197)
392 3tqc_A Pantothenate kinase; bi 92.5 0.093 3.2E-06 56.1 4.7 47 134-180 69-117 (321)
393 2wsm_A Hydrogenase expression/ 92.5 0.12 4.1E-06 52.1 5.4 43 138-182 15-57 (221)
394 3dl0_A Adenylate kinase; phosp 92.4 0.063 2.1E-06 54.1 3.2 23 157-179 2-24 (216)
395 1gtv_A TMK, thymidylate kinase 92.4 0.046 1.6E-06 54.9 2.2 25 157-181 2-26 (214)
396 3zvl_A Bifunctional polynucleo 92.4 0.26 9E-06 55.0 8.6 27 153-179 256-282 (416)
397 2ck3_D ATP synthase subunit be 92.4 0.43 1.5E-05 53.3 10.0 52 156-210 154-206 (482)
398 3be4_A Adenylate kinase; malar 92.4 0.067 2.3E-06 54.0 3.3 24 156-179 6-29 (217)
399 2v54_A DTMP kinase, thymidylat 92.3 0.063 2.2E-06 53.4 3.0 24 156-179 5-28 (204)
400 1tf7_A KAIC; homohexamer, hexa 92.3 0.65 2.2E-05 53.7 12.0 49 142-190 268-316 (525)
401 4e22_A Cytidylate kinase; P-lo 92.2 0.068 2.3E-06 55.4 3.2 26 155-180 27-52 (252)
402 4gp7_A Metallophosphoesterase; 92.1 0.061 2.1E-06 52.0 2.5 22 155-176 9-30 (171)
403 1m7g_A Adenylylsulfate kinase; 92.0 0.085 2.9E-06 52.9 3.6 26 155-180 25-50 (211)
404 1lvg_A Guanylate kinase, GMP k 92.0 0.072 2.4E-06 52.9 3.0 25 156-180 5-29 (198)
405 3ake_A Cytidylate kinase; CMP 92.0 0.082 2.8E-06 52.7 3.5 24 157-180 4-27 (208)
406 3d3q_A TRNA delta(2)-isopenten 91.9 0.083 2.9E-06 56.7 3.5 25 156-180 8-32 (340)
407 1puj_A YLQF, conserved hypothe 91.9 1.2 4.1E-05 46.7 12.5 50 5-60 14-63 (282)
408 2f6r_A COA synthase, bifunctio 91.8 0.094 3.2E-06 55.3 3.8 24 154-177 74-97 (281)
409 1e4v_A Adenylate kinase; trans 91.8 0.092 3.1E-06 52.8 3.5 23 157-179 2-24 (214)
410 1ak2_A Adenylate kinase isoenz 91.7 0.094 3.2E-06 53.5 3.6 26 155-180 16-41 (233)
411 2p5t_B PEZT; postsegregational 91.7 0.079 2.7E-06 54.9 3.0 27 154-180 31-57 (253)
412 3a8t_A Adenylate isopentenyltr 91.7 0.068 2.3E-06 57.2 2.5 26 155-180 40-65 (339)
413 2xb4_A Adenylate kinase; ATP-b 91.6 0.093 3.2E-06 53.2 3.4 23 157-179 2-24 (223)
414 2jeo_A Uridine-cytidine kinase 91.6 0.11 3.7E-06 53.5 3.9 26 154-179 24-49 (245)
415 1a7j_A Phosphoribulokinase; tr 91.5 0.079 2.7E-06 56.1 2.8 27 154-180 4-30 (290)
416 3crm_A TRNA delta(2)-isopenten 91.5 0.086 2.9E-06 56.2 3.0 25 156-180 6-30 (323)
417 2j37_W Signal recognition part 91.5 0.87 3E-05 51.8 11.5 37 154-190 100-136 (504)
418 3r20_A Cytidylate kinase; stru 91.5 0.097 3.3E-06 53.2 3.2 26 155-180 9-34 (233)
419 1np6_A Molybdopterin-guanine d 91.4 0.17 5.9E-06 48.8 4.9 28 155-182 6-33 (174)
420 1vht_A Dephospho-COA kinase; s 91.3 0.12 4E-06 52.2 3.7 23 155-177 4-26 (218)
421 3aez_A Pantothenate kinase; tr 91.3 0.12 4.1E-06 55.2 3.9 29 153-181 88-116 (312)
422 1cp2_A CP2, nitrogenase iron p 91.3 0.18 6.2E-06 52.6 5.3 35 156-190 2-36 (269)
423 1cr0_A DNA primase/helicase; R 91.2 0.18 6.1E-06 53.5 5.3 37 154-190 34-71 (296)
424 3end_A Light-independent proto 91.2 0.17 5.8E-06 54.0 5.1 38 153-190 39-76 (307)
425 1znw_A Guanylate kinase, GMP k 91.2 0.1 3.5E-06 52.2 3.0 26 155-180 20-45 (207)
426 1htw_A HI0065; nucleotide-bind 91.1 0.19 6.4E-06 47.7 4.7 27 153-179 31-57 (158)
427 1fx0_B ATP synthase beta chain 91.1 0.54 1.9E-05 52.7 9.0 52 156-210 166-218 (498)
428 2zts_A Putative uncharacterize 91.1 0.15 5.2E-06 52.3 4.4 46 145-190 20-66 (251)
429 2j9r_A Thymidine kinase; TK1, 91.1 0.32 1.1E-05 48.3 6.4 109 154-275 27-139 (214)
430 1z6g_A Guanylate kinase; struc 91.0 0.093 3.2E-06 53.0 2.6 25 155-179 23-47 (218)
431 1yrb_A ATP(GTP)binding protein 91.0 0.2 7E-06 51.9 5.3 36 154-190 13-48 (262)
432 3exa_A TRNA delta(2)-isopenten 91.0 0.11 3.9E-06 54.7 3.3 24 156-179 4-27 (322)
433 1pzn_A RAD51, DNA repair and r 90.9 0.22 7.4E-06 54.2 5.6 38 142-179 118-155 (349)
434 1svm_A Large T antigen; AAA+ f 90.9 0.17 5.7E-06 55.5 4.7 29 151-179 165-193 (377)
435 3cmu_A Protein RECA, recombina 90.8 0.24 8.1E-06 65.1 6.7 97 141-246 1412-1515(2050)
436 1q3t_A Cytidylate kinase; nucl 90.8 0.14 4.8E-06 52.3 3.8 27 153-179 14-40 (236)
437 2afh_E Nitrogenase iron protei 90.8 0.21 7.1E-06 52.8 5.2 36 155-190 2-37 (289)
438 2r8r_A Sensor protein; KDPD, P 90.7 0.21 7.2E-06 50.1 4.8 34 157-190 8-41 (228)
439 2i3b_A HCR-ntpase, human cance 90.7 0.12 4.1E-06 50.8 3.0 24 157-180 3-26 (189)
440 2f1r_A Molybdopterin-guanine d 90.5 0.094 3.2E-06 50.6 2.0 27 156-182 3-29 (171)
441 1s96_A Guanylate kinase, GMP k 90.4 0.14 4.7E-06 51.7 3.2 27 154-180 15-41 (219)
442 3foz_A TRNA delta(2)-isopenten 90.4 0.14 4.9E-06 53.9 3.4 26 154-179 9-34 (316)
443 3lnc_A Guanylate kinase, GMP k 90.4 0.1 3.5E-06 53.2 2.3 25 155-179 27-52 (231)
444 1sq5_A Pantothenate kinase; P- 90.3 0.27 9.2E-06 52.5 5.6 28 153-180 78-105 (308)
445 1ls1_A Signal recognition part 90.2 0.24 8.4E-06 52.4 5.1 36 154-189 97-132 (295)
446 1nlf_A Regulatory protein REPA 90.1 0.25 8.5E-06 51.9 5.1 28 154-181 29-56 (279)
447 1u0j_A DNA replication protein 90.1 0.27 9.1E-06 50.7 5.1 38 142-179 91-128 (267)
448 1g8f_A Sulfate adenylyltransfe 90.1 0.19 6.4E-06 57.3 4.3 28 154-181 394-421 (511)
449 2p67_A LAO/AO transport system 90.0 0.4 1.4E-05 52.0 6.8 30 153-182 54-83 (341)
450 2orw_A Thymidine kinase; TMTK, 90.0 0.26 8.9E-06 48.1 4.7 26 156-181 4-29 (184)
451 2qmh_A HPR kinase/phosphorylas 89.9 0.15 5.1E-06 49.9 2.9 24 156-179 35-58 (205)
452 1ltq_A Polynucleotide kinase; 89.9 0.16 5.4E-06 54.1 3.4 23 156-178 3-25 (301)
453 3hjn_A DTMP kinase, thymidylat 89.9 0.39 1.3E-05 47.5 6.0 33 157-189 2-34 (197)
454 1c9k_A COBU, adenosylcobinamid 89.7 0.18 6E-06 48.9 3.1 30 157-190 1-30 (180)
455 4eaq_A DTMP kinase, thymidylat 89.7 0.19 6.6E-06 51.0 3.6 28 154-181 25-52 (229)
456 3b5x_A Lipid A export ATP-bind 89.6 1.4 4.8E-05 51.5 11.4 24 155-178 369-392 (582)
457 3cnl_A YLQF, putative uncharac 89.6 0.99 3.4E-05 46.7 9.1 111 4-177 11-121 (262)
458 3fdi_A Uncharacterized protein 89.5 0.2 6.8E-06 49.7 3.5 25 156-180 7-31 (201)
459 3b85_A Phosphate starvation-in 89.4 0.17 5.6E-06 50.6 2.9 23 156-178 23-45 (208)
460 2axn_A 6-phosphofructo-2-kinas 89.3 0.3 1E-05 56.2 5.3 30 154-183 34-63 (520)
461 2onk_A Molybdate/tungstate ABC 89.3 0.19 6.6E-06 51.4 3.3 25 153-178 23-47 (240)
462 2ocp_A DGK, deoxyguanosine kin 89.3 0.21 7.2E-06 51.1 3.6 26 155-180 2-27 (241)
463 4dzz_A Plasmid partitioning pr 89.2 0.3 1E-05 48.4 4.6 35 156-190 2-37 (206)
464 3eph_A TRNA isopentenyltransfe 89.1 0.22 7.4E-06 54.6 3.7 25 156-180 3-27 (409)
465 1oix_A RAS-related protein RAB 89.0 0.21 7.3E-06 49.0 3.3 24 155-178 29-52 (191)
466 2dyk_A GTP-binding protein; GT 89.0 0.23 7.8E-06 46.7 3.4 23 156-178 2-24 (161)
467 2qm8_A GTPase/ATPase; G protei 88.8 0.53 1.8E-05 50.9 6.5 29 153-181 53-81 (337)
468 3gmt_A Adenylate kinase; ssgci 88.8 0.22 7.5E-06 50.3 3.2 89 157-255 10-105 (230)
469 3cmu_A Protein RECA, recombina 88.8 0.73 2.5E-05 60.6 8.8 104 133-245 360-470 (2050)
470 3cmw_A Protein RECA, recombina 88.7 0.57 2E-05 60.8 7.7 105 134-247 710-821 (1706)
471 2pcj_A ABC transporter, lipopr 88.7 0.18 6.2E-06 51.0 2.6 24 155-178 30-53 (224)
472 4hlc_A DTMP kinase, thymidylat 88.7 0.34 1.2E-05 48.2 4.6 29 156-184 3-31 (205)
473 3llm_A ATP-dependent RNA helic 88.7 2.3 7.8E-05 43.1 11.0 21 156-176 77-97 (235)
474 4edh_A DTMP kinase, thymidylat 88.6 0.64 2.2E-05 46.5 6.6 28 155-182 6-33 (213)
475 3tif_A Uncharacterized ABC tra 88.4 0.19 6.6E-06 51.3 2.5 24 155-178 31-54 (235)
476 3cmw_A Protein RECA, recombina 88.3 0.92 3.2E-05 58.9 9.2 104 134-246 361-471 (1706)
477 2qi9_C Vitamin B12 import ATP- 88.2 0.21 7.1E-06 51.4 2.7 32 156-189 27-58 (249)
478 2wji_A Ferrous iron transport 88.1 0.26 8.9E-06 46.9 3.2 22 156-177 4-25 (165)
479 2h92_A Cytidylate kinase; ross 88.1 0.22 7.4E-06 50.1 2.7 24 156-179 4-27 (219)
480 3vr4_D V-type sodium ATPase su 88.0 0.76 2.6E-05 50.9 7.1 25 157-181 153-177 (465)
481 3kjh_A CO dehydrogenase/acetyl 87.9 0.35 1.2E-05 49.6 4.3 33 158-190 3-35 (254)
482 2ged_A SR-beta, signal recogni 87.9 0.39 1.3E-05 46.8 4.5 25 154-178 47-71 (193)
483 2v9p_A Replication protein E1; 87.9 0.38 1.3E-05 50.9 4.5 27 153-179 124-150 (305)
484 3ec1_A YQEH GTPase; atnos1, at 87.9 2 6.7E-05 47.0 10.5 39 135-178 147-185 (369)
485 3fkq_A NTRC-like two-domain pr 87.9 0.43 1.5E-05 52.4 5.2 38 153-190 141-179 (373)
486 2f9l_A RAB11B, member RAS onco 87.9 0.27 9.1E-06 48.5 3.1 24 155-178 5-28 (199)
487 3gfo_A Cobalt import ATP-bindi 87.8 0.22 7.4E-06 52.1 2.5 24 155-178 34-57 (275)
488 2d2e_A SUFC protein; ABC-ATPas 87.8 0.25 8.7E-06 50.9 3.0 24 155-178 29-52 (250)
489 3vkw_A Replicase large subunit 87.7 1.4 4.8E-05 48.9 9.1 25 153-177 159-183 (446)
490 2ffh_A Protein (FFH); SRP54, s 87.7 0.48 1.7E-05 52.6 5.4 36 154-189 97-132 (425)
491 2zu0_C Probable ATP-dependent 87.6 0.26 9E-06 51.3 3.0 24 155-178 46-69 (267)
492 1b0u_A Histidine permease; ABC 87.6 0.23 7.8E-06 51.6 2.5 25 154-178 31-55 (262)
493 1sgw_A Putative ABC transporte 87.6 0.21 7E-06 50.1 2.1 23 156-178 36-58 (214)
494 3io3_A DEHA2D07832P; chaperone 87.5 0.54 1.9E-05 50.9 5.6 38 153-190 16-55 (348)
495 1ji0_A ABC transporter; ATP bi 87.5 0.23 8E-06 50.8 2.5 24 155-178 32-55 (240)
496 3cr8_A Sulfate adenylyltranfer 87.5 0.35 1.2E-05 55.9 4.2 28 155-182 369-396 (552)
497 4g1u_C Hemin import ATP-bindin 87.4 0.23 8E-06 51.6 2.5 25 155-179 37-61 (266)
498 3qf4_A ABC transporter, ATP-bi 87.4 1.2 4.3E-05 52.0 9.0 24 155-178 369-392 (587)
499 3cwq_A Para family chromosome 87.4 0.5 1.7E-05 47.1 4.9 33 157-190 2-35 (209)
500 3ea0_A ATPase, para family; al 87.4 0.58 2E-05 47.8 5.5 37 154-190 3-41 (245)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.2e-41 Score=399.41 Aligned_cols=299 Identities=14% Similarity=0.134 Sum_probs=239.3
Q ss_pred ccccchHHHHHHhhhcC-CCCceEEEEeecCCCchhHHHHHHHH----HhhccCCceEEEEeehhhhccCCHHHHHHHHH
Q 046086 135 VGVECPINEIESLLRTG-SAGVCKLGIWGIGGIGKTTIAGAVFN----KTSRHFEGSYFAHNVQEAQENGGLAHLRQQLL 209 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 209 (966)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|++++|+. ++.... .+...+++.++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 59999999999999754 34689999999999999999999996 6889999999995 433221 46788889999
Q ss_pred HHHhCCCC--CC-----CChhhhHHHHHHHhcCC-cEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhhcCC
Q 046086 210 STLLNDRN--VK-----NSPNIVLNFQSKRFTRK-KVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLSNCL 281 (966)
Q Consensus 210 ~~l~~~~~--~~-----~~~~~~~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 281 (966)
.++..... .. .+.......+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 98876532 11 22344578899999996 999999999999876 3332 28999999999999988765
Q ss_pred -cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHH-HHhcCCC
Q 046086 282 -VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMK-KMEIVPH 359 (966)
Q Consensus 282 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~-~l~~~~~ 359 (966)
...+|+|++|+.+||++||.++||+... .+.+.+++++|+++|+|+||||+++|+.++.+. .+|...+. .+.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccH
Confidence 4468999999999999999999987543 467788999999999999999999999998874 33333333 2222245
Q ss_pred chHHHHHHHhhcCCChhhHhHhh-----------hcccccCCCCHHHHHHHHhHc--CCChhc-----------chhhhh
Q 046086 360 MEIQEVLKISYDGLDDHEQGIFL-----------DISCFLVGEDRDQVMRFLNSC--GFFAEV-----------GLSVRV 415 (966)
Q Consensus 360 ~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~~-----------~l~~L~ 415 (966)
..+..++++||+.||++.|.||+ +||+||++++.+ +.+|.++ ||+... ++++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 66888899999999999999988 999999999877 7889998 776432 489999
Q ss_pred cCcceeEe----cCEEEecHHHHHHHHHHhhccc
Q 046086 416 DKSLITID----YNTIRMHDFLRDMGREIVQKES 445 (966)
Q Consensus 416 ~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 445 (966)
++||++.. ..+|+|||++|++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999976 2479999999999999987765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-35 Score=386.58 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=245.4
Q ss_pred cccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH---hhccCCceEEEEeehhhhccCCHH
Q 046086 126 TFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK---TSRHFEGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 126 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~ 202 (966)
..|.....||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+..++... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 35667788999999999999999766678999999999999999999999986 355676555443343321 12233
Q ss_pred HHHHHHHHHHhCCCC----CCCChhhhHHHHHHHhcCC--cEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhh
Q 046086 203 HLRQQLLSTLLNDRN----VKNSPNIVLNFQSKRFTRK--KVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHV 276 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~----~~~~~~~~~~~l~~~L~~k--~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 276 (966)
...+.+...+..... .....+.....++..+.++ |+||||||||+.++++.+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 344556666554322 2345566777788888776 999999999999877654 689999999999998
Q ss_pred hhc-CCcceeEeecc-CChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHHHH
Q 046086 277 LSN-CLVDQIYEVKE-LLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMKKM 354 (966)
Q Consensus 277 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~~l 354 (966)
+.. .+....+++++ |+.+||++||...++... +++.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45667899996 999999999999985432 33446799999999999999999999998866 4799988888
Q ss_pred hcCC-----------CchHHHHHHHhhcCCChhhHhHhhhcccccCCC--CHHHHHHHHhHcCCChhcchhhhhcCccee
Q 046086 355 EIVP-----------HMEIQEVLKISYDGLDDHEQGIFLDISCFLVGE--DRDQVMRFLNSCGFFAEVGLSVRVDKSLIT 421 (966)
Q Consensus 355 ~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~ 421 (966)
.... ...+..++++||+.|++++|.||+++|+||.++ +.+.+..+|.+++...+..+++|++++|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 6543 145899999999999999999999999999986 577899999877767788899999999999
Q ss_pred Ee-cC---EEEecHHHHHHHHHHhhcc
Q 046086 422 ID-YN---TIRMHDFLRDMGREIVQKE 444 (966)
Q Consensus 422 ~~-~~---~~~mHdll~~~~~~i~~~e 444 (966)
.. ++ +|+||+++|+++++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 87 33 4999999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.8e-35 Score=352.11 Aligned_cols=278 Identities=16% Similarity=0.122 Sum_probs=214.8
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHH--HhhccCCc-eEEEEeehhhhccCCHHHHHHHH
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFN--KTSRHFEG-SYFAHNVQEAQENGGLAHLRQQL 208 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~~~~~~~~~l~~~l 208 (966)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++ .......+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CCCCHHHHHHHH
Confidence 34599999999999999753 3589999999999999999999997 57889987 66665 43 334455555555
Q ss_pred HHHHhC---CCC-CC-------CChhhhHHHHHHHh---cCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 209 LSTLLN---DRN-VK-------NSPNIVLNFQSKRF---TRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 209 l~~l~~---~~~-~~-------~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
...+.. ... .. .+.+.....+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 443221 100 00 12233455666655 6899999999999999998752 799999999999
Q ss_pred hhhhcCCcceeEeec------cCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCC--CHHH
Q 046086 275 HVLSNCLVDQIYEVK------ELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGR--RKEE 346 (966)
Q Consensus 275 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~--~~~~ 346 (966)
.++..+.....|+|+ +|+.+||++||+++. +.. . .++..++ |+|+||||+++|+.|+++ +..+
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 988644434467777 999999999999984 322 1 2234443 999999999999999886 6788
Q ss_pred HHHHHHHHhcCCCchHHHHHHHhhcCCChhh-HhHhhhcccccCCCC--HHHHHHHHhHcCC-ChhcchhhhhcCcceeE
Q 046086 347 WKSAMKKMEIVPHMEIQEVLKISYDGLDDHE-QGIFLDISCFLVGED--RDQVMRFLNSCGF-FAEVGLSVRVDKSLITI 422 (966)
Q Consensus 347 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~--~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~~ 422 (966)
|+.. ....+..+|++||+.||+++ |.||+++|+||.+.+ .+.+..+|.+.|. .++..+++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8763 35789999999999999999 999999999998874 5678999988753 35667999999999998
Q ss_pred e--cCEEEecHHHHHHH
Q 046086 423 D--YNTIRMHDFLRDMG 437 (966)
Q Consensus 423 ~--~~~~~mHdll~~~~ 437 (966)
. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 56899999998854
No 4
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-35 Score=285.56 Aligned_cols=126 Identities=42% Similarity=0.740 Sum_probs=108.1
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccccccchhhHHHHHhh-
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEER- 79 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~- 79 (966)
|+.|.++|.+||++|+++|||||+|||+|+||++||++|++|+++++++||||||+|||++||+|+|+||+||++|+.+
T Consensus 49 G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~ 128 (176)
T 3jrn_A 49 GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE 128 (176)
T ss_dssp ----------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhccccccc
Q 046086 80 FPEMRKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDDTFE 128 (966)
Q Consensus 80 ~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~ 128 (966)
..+++++||+||+++|+++||++. ++|+++|++||++|.++|+.++|
T Consensus 129 ~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 129 DPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp CHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHHHHHHHHHhcCCCC
Confidence 457999999999999999999984 67999999999999999987765
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=339.59 Aligned_cols=342 Identities=20% Similarity=0.242 Sum_probs=249.5
Q ss_pred cccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh---hccCC-ceEEEEeehhhhccCCH
Q 046086 126 TFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT---SRHFE-GSYFAHNVQEAQENGGL 201 (966)
Q Consensus 126 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~~~~~~~ 201 (966)
..|.....||||+.++++|.++|....++.++|+|+||||+||||||++++++. ..+|+ +++|+.. ........+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~~~~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQDKSGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESCCHHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCCchHHHH
Confidence 346667889999999999999997655678999999999999999999999854 67895 5677653 222111111
Q ss_pred HHHHHHHHHHHhCC----CCCCCChhhhHHHHHHHhcC--CcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 202 AHLRQQLLSTLLND----RNVKNSPNIVLNFQSKRFTR--KKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 202 ~~l~~~ll~~l~~~----~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
..+ ..+...+... .....+.+.....++..+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 197 ~~l-~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 197 MKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHH-HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHH-HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 222 2233333321 11234555667777777765 7899999999998776543 68999999999998
Q ss_pred hhhcCCcceeEee---ccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcCCCHHHHHHHHH
Q 046086 276 VLSNCLVDQIYEV---KELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFGRRKEEWKSAMK 352 (966)
Q Consensus 276 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~~~~~~w~~~l~ 352 (966)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 345665 4899999999999998642 122235689999999999999999999998764 36988888
Q ss_pred HHhcCC-----------CchHHHHHHHhhcCCChhhHhHhhhcccccCCC--CHHHHHHHHhHcCCChhcchhhhhcCcc
Q 046086 353 KMEIVP-----------HMEIQEVLKISYDGLDDHEQGIFLDISCFLVGE--DRDQVMRFLNSCGFFAEVGLSVRVDKSL 419 (966)
Q Consensus 353 ~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sL 419 (966)
.+.... ...+..++..||+.||+++|.||+++|+||.+. +.+.+..+|...+......++.|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 876432 247899999999999999999999999999875 4567888887654455677999999999
Q ss_pred eeEec----CEEEecHHHHHHHHHHhhcc-------------------ccCCCCcceEecchhhHHHHhhccccccceee
Q 046086 420 ITIDY----NTIRMHDFLRDMGREIVQKE-------------------SIHHPGERSRLWHYKDIYEVLTRNMGTTAIQA 476 (966)
Q Consensus 420 i~~~~----~~~~mHdll~~~~~~i~~~e-------------------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~v~~ 476 (966)
+.... .+|+||+++|+++++....+ ....++.+..+|..+.+++++..+... .+..
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~~~ 502 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-ELCA 502 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HHHH
Confidence 98762 37999999999998873211 011233444566666777776654432 3344
Q ss_pred eecccc
Q 046086 477 ISLDMS 482 (966)
Q Consensus 477 i~Ld~s 482 (966)
+..+++
T Consensus 503 l~~~~~ 508 (591)
T 1z6t_A 503 LMFSLD 508 (591)
T ss_dssp HHSCHH
T ss_pred HHhCHH
Confidence 444443
No 6
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=6.7e-35 Score=285.52 Aligned_cols=125 Identities=33% Similarity=0.660 Sum_probs=118.1
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhc-CCCEEEeEeeecccCccccccccchhhHHHHHhh
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHD-YGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEER 79 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~-~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~ 79 (966)
|+.|.++|.+||++|+++|||||+|||+|+|||+||++|++|+++ ++++||||||+|||++||+|+|.||+||++|+++
T Consensus 76 G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~ 155 (204)
T 3ozi_A 76 GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155 (204)
T ss_dssp GGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999875 6899999999999999999999999999999998
Q ss_pred Ch-hhHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhcccc
Q 046086 80 FP-EMRKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDD 125 (966)
Q Consensus 80 ~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~ 125 (966)
+. +++++||.||+++|+++||++.....|+++|++||++|+++++.
T Consensus 156 ~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 156 FDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp SCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 64 58999999999999999999986788999999999999998853
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.2e-31 Score=329.33 Aligned_cols=320 Identities=19% Similarity=0.205 Sum_probs=230.0
Q ss_pred eecchhhcCCCCCceEEEecCCCccccccCCC-CC--CceeEEEecCCCCc-ccc---cccc-cceEeecCCCCCc-ccc
Q 046086 489 RINRSTFSKMPKLRFLKFYGKNKCMLSHFKGV-PF--TDVRYFEWHEFPLK-TLN---IRAE-NLVSLKLPGSNVE-QLW 559 (966)
Q Consensus 489 ~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~-~~--~~L~~L~l~~~~l~-~lp---~~l~-~L~~L~L~~n~i~-~l~ 559 (966)
...+..|.++++|++|++++|... ..+|.. +. .+|++|++++|.+. .+| ..+. +|++|++++|++. .+|
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 355566777777777777766221 134432 11 66777777777765 555 3333 6777777777766 345
Q ss_pred ccccc--ccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CC
Q 046086 560 DDVQN--LVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CS 635 (966)
Q Consensus 560 ~~~~~--l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l 635 (966)
..+.. +++|++|++++|.+.+.+| .++++++|++|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+ .+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 55544 6677777777777666666 37777777777777777777777777777778888887777777777766 67
Q ss_pred CcccEEEecCCCCCCCCcccccC--cccEEeecccccc-cccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEc
Q 046086 636 ESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEI 712 (966)
Q Consensus 636 ~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 712 (966)
++|++|++++|...+.+|..+.. +|+.|+|++|.++ .+|.+++.+++|+.|+|++|++.+.+|..+..+++|+.|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 77888888877777777765544 7778888888777 66777777888888888888777777777777888888888
Q ss_pred cCCCCCccccccccC-----------------------------------------------------------------
Q 046086 713 SSCSNLKRFPEISSS----------------------------------------------------------------- 727 (966)
Q Consensus 713 s~~~~l~~~p~~~~~----------------------------------------------------------------- 727 (966)
++|+..+.+|..+..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 877766666654322
Q ss_pred --CCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceee
Q 046086 728 --CNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWI 804 (966)
Q Consensus 728 --~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~ 804 (966)
+..+++|+.|+|++|+++ .+|..++++++|+.|+|++|++.+.+|..+.+ |++|+.||+++|++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-----------L~~L~~LdLs~N~l-- 692 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-----------LRGLNILDLSSNKL-- 692 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-----------CTTCCEEECCSSCC--
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-----------CCCCCEEECCCCcc--
Confidence 111246888888888888 78888888888888888888888888875543 34555688999998
Q ss_pred cceeecCCCCCCCCccccCCCcEEEE
Q 046086 805 HRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 805 ~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
.+.||..|..++.+..+++
T Consensus 693 -------~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 693 -------DGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp -------EECCCGGGGGCCCCSEEEC
T ss_pred -------cCcCChHHhCCCCCCEEEC
Confidence 7899999999999988887
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.3e-30 Score=318.87 Aligned_cols=279 Identities=19% Similarity=0.218 Sum_probs=164.9
Q ss_pred ecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCc-ccc---cc-cccceEeecCCCCCc-ccccccc
Q 046086 490 INRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLK-TLN---IR-AENLVSLKLPGSNVE-QLWDDVQ 563 (966)
Q Consensus 490 ~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~-~lp---~~-l~~L~~L~L~~n~i~-~l~~~~~ 563 (966)
..+..|.++++|++|++++|... ..+|.....+|++|++++|.+. .+| .. +++|++|+|++|+++ .+|..+.
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCE--ESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCccc--CccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 44567777777888877777432 1233333367777777777765 555 22 367777777777776 5566677
Q ss_pred cccccceecccCCCCCCCCC-C-CCCCccCcEEeccCccCCccccccccCCC-cccEEeccCCCCCcccCCc--------
Q 046086 564 NLVNIKEIDLHGSKQLSKLP-D-LSQARNLERLKLDGCSSLMETHSSIQYLN-KLEVLDLRLCESLRSLPDT-------- 632 (966)
Q Consensus 564 ~l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~L~~n~~l~~lp~~-------- 632 (966)
++++|++|+|++|.+.+.+| . +.++++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 77777777777776665666 2 66677777777777666656666665554 5555555555544444443
Q ss_pred ------------------c-CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccc-cccccccCCCCCCEEeccC
Q 046086 633 ------------------I-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHN 690 (966)
Q Consensus 633 ------------------~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~ 690 (966)
+ .+++|++|++++|...+.+|..+.. +|+.|++++|.++ .+|..+..+++|+.|+|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 3 4444555555555444444443332 4555555555555 4455555555555555555
Q ss_pred CCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCCCCcc
Q 046086 691 CTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 691 n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~ 769 (966)
|.+.+.+|..+.++++|+.|++++|...+.+|..+..+. +|+.|+|++|.++ .+|..+.++++|+.|+|++|++.+
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE---NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT---TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC---CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 555555555555556666666665555555555555443 5666666666665 556666666666666666666655
Q ss_pred ccCC
Q 046086 770 TLPE 773 (966)
Q Consensus 770 ~lp~ 773 (966)
.+|.
T Consensus 553 ~ip~ 556 (768)
T 3rgz_A 553 TIPA 556 (768)
T ss_dssp BCCG
T ss_pred cCCh
Confidence 5553
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.2e-28 Score=297.75 Aligned_cols=337 Identities=19% Similarity=0.161 Sum_probs=257.6
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCC-CC--CceeEEEecCCCCcccc----cccccceEeec
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGV-PF--TDVRYFEWHEFPLKTLN----IRAENLVSLKL 550 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~-~~--~~L~~L~l~~~~l~~lp----~~l~~L~~L~L 550 (966)
.||++.+. ...+.+.+|.++++|++|++++|.. ..+... +. .+|++|++++|.+..++ ..+++|++|+|
T Consensus 37 ~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 37 CLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp EEECTTCC-CSEECTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCc-cCcCChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45555554 5578888999999999999999843 444333 33 89999999999998875 67899999999
Q ss_pred CCCCCccc-ccccccccccceecccCCCCCC-CCCCCCCCccCcEEeccCccCCccccccccCCCccc--EEeccCCCCC
Q 046086 551 PGSNVEQL-WDDVQNLVNIKEIDLHGSKQLS-KLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLE--VLDLRLCESL 626 (966)
Q Consensus 551 ~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~-~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~--~L~L~~n~~l 626 (966)
++|.++.+ +..+.++++|++|++++|.+.. ..|.+..+++|++|++++|.+.+..+..++.+++|+ .|++++|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988 5679999999999999999776 346777799999999999988887788899999999 8999999876
Q ss_pred cccCCccCCC----------------------------------------------------cccEEEecCCCCCCCCcc
Q 046086 627 RSLPDTICSE----------------------------------------------------SLFELRLWGCLNLKNFPE 654 (966)
Q Consensus 627 ~~lp~~~~l~----------------------------------------------------~L~~L~L~~~~~l~~~p~ 654 (966)
+..|..+... +|+.|++++|......+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 6666554433 455566666654444343
Q ss_pred cccC--cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccccc-ccCCCCC
Q 046086 655 ISSS--HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEI-SSSCNRE 731 (966)
Q Consensus 655 ~~~~--~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~-~~~~~~~ 731 (966)
.+.. +|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.+|.. +.. +
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN---L 349 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT---C
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc---c
Confidence 3333 799999999999999998999999999999999888877888888999999999998777666653 443 3
Q ss_pred CCccEEEcCCCCcccc---chHhhcCCCCCEEeecCCCCccccCCC---CCCcceeecccC-----------cccccccC
Q 046086 732 GSTEVLHLKGNNLERI---PESIRHLSKLKSLDISYCEWLHTLPEL---PRNLYHLEAHHC-----------TLLEALSG 794 (966)
Q Consensus 732 ~~L~~L~Ls~n~l~~l---p~~i~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~~~~c-----------~~L~~L~~ 794 (966)
++|+.|++++|.++.+ |..+..+++|++|++++|++.+..|.. +++|+.|+++++ ..+++|..
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 4888888888888755 557788888888888888877666653 356777776543 23455666
Q ss_pred CCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 795 FSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 795 l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
|++++|.+ .+..|.+|..++.+..+++
T Consensus 430 L~l~~n~l---------~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 430 LNLSHSLL---------DISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp EECTTCCC---------BTTCTTTTTTCTTCCEEEC
T ss_pred EECCCCcc---------CCcCHHHHhCCCCCCEEEC
Confidence 77777776 4445556666655555555
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.1e-29 Score=295.01 Aligned_cols=337 Identities=18% Similarity=0.213 Sum_probs=253.6
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L 545 (966)
.++.+ |++.+. ...+.+..|.++++|++|++++|. +..++...+ .+|++|++++|.+..+| ..+++|
T Consensus 27 ~L~~L--~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 27 AMKSL--DLSFNK-ITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TCCEE--ECCSSC-CCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CccEE--ECcCCc-cCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 34444 455544 446778899999999999999984 345554333 89999999999999888 578899
Q ss_pred eEeecCCCCCccc--ccccccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEecc
Q 046086 546 VSLKLPGSNVEQL--WDDVQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLR 621 (966)
Q Consensus 546 ~~L~L~~n~i~~l--~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 621 (966)
++|+|++|.++.+ |..+.++++|++|++++|...+.+| .+.++++|++|++++|.+.+..|..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 6779999999999999998677666 48999999999999999888888888877777777776
Q ss_pred CCCCCcccCCcc--CCCcccEEEecCCCCCCCC-----------------------------------------------
Q 046086 622 LCESLRSLPDTI--CSESLFELRLWGCLNLKNF----------------------------------------------- 652 (966)
Q Consensus 622 ~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~----------------------------------------------- 652 (966)
+|.. +.+|..+ .+++|++|++++|...+..
T Consensus 181 ~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 6542 3333322 3455555555555433210
Q ss_pred ----------------------------------cc-----------cccCcccEEeecccccccccccc-cCCCCCCEE
Q 046086 653 ----------------------------------PE-----------ISSSHIHFLDLYECGIEDMPLSI-ECLSKLNSL 686 (966)
Q Consensus 653 ----------------------------------p~-----------~~~~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L 686 (966)
|. ....+|+.|++++|.++.+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 00 00125777888888888888776 578999999
Q ss_pred eccCCCCcccccc---cccCCCCCcEEEccCCCCCcccc---ccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEE
Q 046086 687 DIHNCTRLEYIKS---SIFKLKSLKHIEISSCSNLKRFP---EISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSL 760 (966)
Q Consensus 687 ~L~~n~~~~~~p~---~l~~l~~L~~L~Ls~~~~l~~~p---~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L 760 (966)
+|++|.+.+.+|. .+..+++|++|++++|...+ +| ..+..+. +|+.|+|++|+++.+|..+..+++|++|
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~---~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLK---NLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCT---TCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCC---CCCEEECCCCCCccCChhhcccccccEE
Confidence 9999988877643 37788999999999976543 33 2344443 8999999999999999888899999999
Q ss_pred eecCCCCccccCCCCCCcceeecccCc------ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 761 DISYCEWLHTLPELPRNLYHLEAHHCT------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 761 ~L~~n~~l~~lp~~~~~L~~L~~~~c~------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
++++|++.......+++|+.|++++|. .+++|+.|++++|.+ ..||.+ ..++.+..+++.
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l----------~~ip~~-~~l~~L~~L~Ls 481 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL----------KTLPDA-SLFPVLLVMKIS 481 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC----------SSCCCG-GGCTTCCEEECC
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc----------CcCCCc-ccCccCCEEecC
Confidence 999999764444456789999998763 467788889999998 578874 567778877763
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.7e-29 Score=303.56 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=217.8
Q ss_pred CCCCcccc---cccccceEeecCCCCCcc------------------cccccc--cccccceecccCCCCCCCCCC-CCC
Q 046086 532 EFPLKTLN---IRAENLVSLKLPGSNVEQ------------------LWDDVQ--NLVNIKEIDLHGSKQLSKLPD-LSQ 587 (966)
Q Consensus 532 ~~~l~~lp---~~l~~L~~L~L~~n~i~~------------------l~~~~~--~l~~L~~L~Ls~n~~~~~~p~-l~~ 587 (966)
+|.+..+| ..+++|++|+|++|.++. +|..+. ++++|++|+|++|.+.+.+|. +++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34555577 567888888888888887 888888 888888888888888888884 888
Q ss_pred CccCcEEeccCcc-CCc-cccccccCC------CcccEEeccCCCCCcccCC--cc-CCCcccEEEecCCCCCCCCcccc
Q 046086 588 ARNLERLKLDGCS-SLM-ETHSSIQYL------NKLEVLDLRLCESLRSLPD--TI-CSESLFELRLWGCLNLKNFPEIS 656 (966)
Q Consensus 588 l~~L~~L~L~~~~-~~~-~~~~~l~~l------~~L~~L~L~~n~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p~~~ 656 (966)
+++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+. .+|. .+ .+++|++|++++|...+.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 8888888888887 666 688777776 88888888888765 7887 55 78888888888888776777 33
Q ss_pred cC--cccEEeecccccccccccccCCCC-CCEEeccCCCCcccccccccCCC--CCcEEEccCCCCCccccccccCCC--
Q 046086 657 SS--HIHFLDLYECGIEDMPLSIECLSK-LNSLDIHNCTRLEYIKSSIFKLK--SLKHIEISSCSNLKRFPEISSSCN-- 729 (966)
Q Consensus 657 ~~--~L~~L~L~~n~i~~lp~~~~~l~~-L~~L~L~~n~~~~~~p~~l~~l~--~L~~L~Ls~~~~l~~~p~~~~~~~-- 729 (966)
.. +|+.|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|...+..|..+..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 33 788888888888888888888888 888888888766 7777776654 888888888887777776655111
Q ss_pred --CCCCccEEEcCCCCccccchHh-hcCCCCCEEeecCCCCccccCCC-CC----------CcceeecccCc--------
Q 046086 730 --REGSTEVLHLKGNNLERIPESI-RHLSKLKSLDISYCEWLHTLPEL-PR----------NLYHLEAHHCT-------- 787 (966)
Q Consensus 730 --~~~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~n~~l~~lp~~-~~----------~L~~L~~~~c~-------- 787 (966)
.+.+|+.|+|++|.++.+|..+ ..+++|++|+|++|++. .+|.. +. +|+.|+++++.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 2237888888888888888765 45888888888888876 55542 22 78888876542
Q ss_pred ---ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 788 ---LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 788 ---~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
.+++|..|++++|++ ..+|.++..++.+..+++
T Consensus 508 ~~~~l~~L~~L~Ls~N~l----------~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSF----------SKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp STTTCTTCCEEECCSSCC----------SSCCCGGGGCSSCCEEEC
T ss_pred hhccCCCcCEEECCCCCC----------CCcChhhhcCCCCCEEEC
Confidence 456677778888887 347777777777777766
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.6e-28 Score=301.37 Aligned_cols=386 Identities=15% Similarity=0.137 Sum_probs=209.1
Q ss_pred cccccccceeeecchhhcCCCCCceEEEecCCCccccccCCC-CC--CceeEEEecCCCCccc-c---cccccceEeecC
Q 046086 479 LDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGV-PF--TDVRYFEWHEFPLKTL-N---IRAENLVSLKLP 551 (966)
Q Consensus 479 Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~-~~--~~L~~L~l~~~~l~~l-p---~~l~~L~~L~L~ 551 (966)
||++.+. ...+.+..|.++++|++|++++|.. +..++.. +. .+|++|++++|.+..+ | ..+.+|++|+|+
T Consensus 29 LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 29 LLLSFNY-IRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp EEEESCC-CCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred EECCCCc-CCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 3444443 3456666777777777777776632 1333222 22 6677777777776666 3 556677777777
Q ss_pred CCCCcc-cccc--cccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCC--Cc----------
Q 046086 552 GSNVEQ-LWDD--VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYL--NK---------- 614 (966)
Q Consensus 552 ~n~i~~-l~~~--~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l--~~---------- 614 (966)
+|.+.. +|.. +.++++|++|+|++|.+....+ .|+++++|++|+|++|.+.+..+..+..+ ++
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 777764 3443 6677777777777776655443 26677777777777766555444444333 33
Q ss_pred --------------------ccEEeccCCCCCcccCCcc---------------------------------------CC
Q 046086 615 --------------------LEVLDLRLCESLRSLPDTI---------------------------------------CS 635 (966)
Q Consensus 615 --------------------L~~L~L~~n~~l~~lp~~~---------------------------------------~l 635 (966)
|+.|++++|...+.+|..+ ..
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 4444444443222222111 01
Q ss_pred CcccEEEecCCCCCCCCcccccC--cccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEc
Q 046086 636 ESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEI 712 (966)
Q Consensus 636 ~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 712 (966)
++|+.|++++|......|..+.. +|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.+..|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 34444555444433333332222 455555555555544 334555555555555555554444555555555555555
Q ss_pred cCCCCCccccccccCCCCCCCccEEEcCCCCccc-------------------c--------------------c--hHh
Q 046086 713 SSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER-------------------I--------------------P--ESI 751 (966)
Q Consensus 713 s~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-------------------l--------------------p--~~i 751 (966)
++|......+..+..+. +|+.|+|++|.++. + + ..+
T Consensus 346 ~~N~i~~~~~~~~~~l~---~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLE---KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CSCCCCCCCSSCSCSCC---CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred CCCCCCccChhhhcCCC---CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 55433222222222221 34444444333332 2 1 123
Q ss_pred hcCCCCCEEeecCCCCcccc----CCCCCCcceeecccCc---------------ccccccCCCCccCceeecceeecCC
Q 046086 752 RHLSKLKSLDISYCEWLHTL----PELPRNLYHLEAHHCT---------------LLEALSGFSLTHNNKWIHRRMYFPG 812 (966)
Q Consensus 752 ~~l~~L~~L~L~~n~~l~~l----p~~~~~L~~L~~~~c~---------------~L~~L~~l~ls~N~l~~~~~~~~p~ 812 (966)
.++++|+.|+|++|++.+.. +..+++|+.|+++++. .+++|..|++++|.+ .
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---------~ 493 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL---------N 493 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH---------T
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc---------c
Confidence 46777888888888766432 2334677777776542 457788888999988 6
Q ss_pred CCCCCCccccCCCcEEEE------EcCCCCCCCCCceeeEEEEEEEeecCCCCCCCCccCcceeeccCCCceeeeeeec
Q 046086 813 NEIPKWFRYQSMGSSVTL------EMPPTGFFSNKKLMGFAVCAIVAFRDQHHDSDSRYSGHYEYDRKDNLYSLDCTWK 885 (966)
Q Consensus 813 ~~iP~~~~~~~~~~~l~~------~lp~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 885 (966)
+..|..|..++.+..+++ .+|+..+.+....+.+.-+-+...... .+. ..-..+..+|++.|+|.+.
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~---~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD---VFV---SLSVLDITHNKFICECELS 566 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSC---CCS---SCCEEEEEEECCCCSSSCC
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChh---HhC---CcCEEEecCCCcccccccH
Confidence 667788999999999998 345544433333333333333222221 111 1223355678888988753
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=9.2e-28 Score=289.90 Aligned_cols=204 Identities=17% Similarity=0.166 Sum_probs=101.6
Q ss_pred CCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc---cccccCCCCCCEEec
Q 046086 612 LNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM---PLSIECLSKLNSLDI 688 (966)
Q Consensus 612 l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~L 688 (966)
+++|+.|++++|.. +.+|.. .+++|+.|++++|.....++.....+|++|++++|.++.+ |..+..+++|+.|++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 33444555554443 445533 5555555555555443333322233566666666666544 445556666666666
Q ss_pred cCCCCcccccccccCCCCCcEEEccCCCCCcccc-ccccCCCCCCCccEEEcCCCCccc-cchHhhcCCCCCEEeecCCC
Q 046086 689 HNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP-EISSSCNREGSTEVLHLKGNNLER-IPESIRHLSKLKSLDISYCE 766 (966)
Q Consensus 689 ~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~~~~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~n~ 766 (966)
++|.+. .+|..+..+++|+.|++++|...+..| ..+..+ ++|+.|++++|.++. .|..+.++++|++|++++|+
T Consensus 384 ~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL---EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp CSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC---TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhcc---ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 666432 244555556666666666554443333 222222 255555555555552 34445555555555555555
Q ss_pred Cccc-cCCCC---CCcceeecccC----------cccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 767 WLHT-LPELP---RNLYHLEAHHC----------TLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 767 ~l~~-lp~~~---~~L~~L~~~~c----------~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
+.+. +|..+ ++|+.|++++| ..+++|+.|++++|.+ .+.+|.+|..++.+..+++
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL---------LFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------SCEEGGGTTTCTTCCEEEC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC---------CCcCHHHccCCCcCCEEEC
Confidence 5442 33322 34455554443 1234444455555555 3334555555555555554
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.8e-28 Score=296.70 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=251.0
Q ss_pred hcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCC-Ccc--cc---cccc-------cceEeecCCCCCcccc
Q 046086 495 FSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFP-LKT--LN---IRAE-------NLVSLKLPGSNVEQLW 559 (966)
Q Consensus 495 f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~-l~~--lp---~~l~-------~L~~L~L~~n~i~~l~ 559 (966)
|.++++|++|++++|... ..+|..+. ++|++|++++|. +.. +| ..+. +|++|+|++|+++.+|
T Consensus 487 f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred hccCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 449999999999998543 45665544 899999999998 774 77 3444 9999999999999999
Q ss_pred c--ccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCc-ccEEeccCCCCCcccCCcc-CC
Q 046086 560 D--DVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNK-LEVLDLRLCESLRSLPDTI-CS 635 (966)
Q Consensus 560 ~--~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~n~~l~~lp~~~-~l 635 (966)
. .+.++++|++|+|++|.+. .+|.++.+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|.+. .+|..+ .+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 9 8999999999999999977 8889999999999999999877 88999999999 999999999855 889876 33
Q ss_pred --CcccEEEecCCCCCCCCcccc-------cCcccEEeeccccccccccccc-CCCCCCEEeccCCCCcccccccccCC-
Q 046086 636 --ESLFELRLWGCLNLKNFPEIS-------SSHIHFLDLYECGIEDMPLSIE-CLSKLNSLDIHNCTRLEYIKSSIFKL- 704 (966)
Q Consensus 636 --~~L~~L~L~~~~~l~~~p~~~-------~~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~L~~n~~~~~~p~~l~~l- 704 (966)
++|+.|+|++|...+.+|... ..+|+.|+|++|.++.+|..+. .+++|+.|+|++|.+. .+|..+...
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 459999999999877666443 1279999999999999998764 8999999999999776 677655433
Q ss_pred -------CCCcEEEccCCCCCcccccccc--CCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecC------CCCcc
Q 046086 705 -------KSLKHIEISSCSNLKRFPEISS--SCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISY------CEWLH 769 (966)
Q Consensus 705 -------~~L~~L~Ls~~~~l~~~p~~~~--~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------n~~l~ 769 (966)
++|+.|+|++|... .+|..+. .++ +|+.|+|++|.|+.+|..+.++++|+.|+|++ |++.+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~---~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP---YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT---TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCC---CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence 39999999997655 7887765 444 99999999999999999999999999999987 66667
Q ss_pred ccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 770 TLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 770 ~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
.+|..+. .+++|..|++++|.+ +.||..+. +.+..+++.
T Consensus 797 ~ip~~l~-----------~L~~L~~L~Ls~N~L----------~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 797 QWPTGIT-----------TCPSLIQLQIGSNDI----------RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCCTTGG-----------GCSSCCEEECCSSCC----------CBCCSCCC--SSSCEEECC
T ss_pred cChHHHh-----------cCCCCCEEECCCCCC----------CccCHhhc--CCCCEEECC
Confidence 7775443 344555688899988 78888765 466766663
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.3e-28 Score=295.35 Aligned_cols=309 Identities=13% Similarity=0.101 Sum_probs=257.2
Q ss_pred cchhhc--CCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCC-Ccc--cc---ccc------ccceEeecCCCC
Q 046086 491 NRSTFS--KMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFP-LKT--LN---IRA------ENLVSLKLPGSN 554 (966)
Q Consensus 491 ~~~~f~--~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~-l~~--lp---~~l------~~L~~L~L~~n~ 554 (966)
-|..+. ++++|++|++++|... ..+|..+. ++|++|++++|. +.. +| ..+ ++|++|+|++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 455667 9999999999998543 45666555 899999999998 874 88 444 899999999999
Q ss_pred Cccccc--ccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCc-ccEEeccCCCCCcccCC
Q 046086 555 VEQLWD--DVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNK-LEVLDLRLCESLRSLPD 631 (966)
Q Consensus 555 i~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~-L~~L~L~~n~~l~~lp~ 631 (966)
++.+|. .+.++++|++|++++|.+.+.+|.++.+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 999999 899999999999999998878889999999999999999766 88899999999 999999999865 8998
Q ss_pred ccC---CCcccEEEecCCCCCCCCccccc-------C--cccEEeecccccccccccc-cCCCCCCEEeccCCCCccccc
Q 046086 632 TIC---SESLFELRLWGCLNLKNFPEISS-------S--HIHFLDLYECGIEDMPLSI-ECLSKLNSLDIHNCTRLEYIK 698 (966)
Q Consensus 632 ~~~---l~~L~~L~L~~~~~l~~~p~~~~-------~--~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~~p 698 (966)
.+. +++|++|++++|...+..|..+. . +|+.|+|++|.++.+|..+ ..+++|+.|+|++|.+. .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 772 44899999999999887776555 2 7999999999999998864 56999999999999877 666
Q ss_pred ccccC--------CCCCcEEEccCCCCCcccccccc--CCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeec-----
Q 046086 699 SSIFK--------LKSLKHIEISSCSNLKRFPEISS--SCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDIS----- 763 (966)
Q Consensus 699 ~~l~~--------l~~L~~L~Ls~~~~l~~~p~~~~--~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~----- 763 (966)
..+.. +++|+.|+|++|... .+|..+. .+. +|+.|+|++|.++.+|..+.++++|+.|+|+
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~---~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP---YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT---TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC---CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccc
Confidence 54332 239999999997665 7887765 444 9999999999999999999999999999995
Q ss_pred -CCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 764 -YCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 764 -~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
+|++.+.+|..+. .+++|+.|++++|.+ +.||.++. +.+..+++.
T Consensus 550 s~N~l~~~~p~~l~-----------~l~~L~~L~Ls~N~l----------~~ip~~~~--~~L~~L~Ls 595 (636)
T 4eco_A 550 QGNRTLREWPEGIT-----------LCPSLTQLQIGSNDI----------RKVNEKIT--PNISVLDIK 595 (636)
T ss_dssp TCCBCCCCCCTTGG-----------GCSSCCEEECCSSCC----------CBCCSCCC--TTCCEEECC
T ss_pred ccCcccccChHHHh-----------cCCCCCEEECCCCcC----------CccCHhHh--CcCCEEECc
Confidence 5666777776443 344556688999998 78888766 567777664
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.9e-27 Score=292.06 Aligned_cols=316 Identities=16% Similarity=0.122 Sum_probs=257.8
Q ss_pred cchhhcCCCCCceEEEecCCCcccc---------------ccCCCCC----CceeEEEecCCC-Ccccc---cccccceE
Q 046086 491 NRSTFSKMPKLRFLKFYGKNKCMLS---------------HFKGVPF----TDVRYFEWHEFP-LKTLN---IRAENLVS 547 (966)
Q Consensus 491 ~~~~f~~l~~L~~L~l~~n~~~~l~---------------~l~~~~~----~~L~~L~l~~~~-l~~lp---~~l~~L~~ 547 (966)
-|..|.++++|++|++++|...... .+|..+. .+|++|++++|. ...+| ..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 3557999999999999999543200 1777652 899999999998 55677 67899999
Q ss_pred eecCCCC-Ccc--ccccccccc-------ccceecccCCCCCCCCCC---CCCCccCcEEeccCccCCccccccccCCCc
Q 046086 548 LKLPGSN-VEQ--LWDDVQNLV-------NIKEIDLHGSKQLSKLPD---LSQARNLERLKLDGCSSLMETHSSIQYLNK 614 (966)
Q Consensus 548 L~L~~n~-i~~--l~~~~~~l~-------~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 614 (966)
|+|++|+ ++. +|..+.+++ +|++|+|++|.+. .+|. ++++++|+.|+|++|.+. .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 884 898888777 9999999999977 7776 899999999999999877 888 9999999
Q ss_pred ccEEeccCCCCCcccCCcc-CCCc-ccEEEecCCCCCCCCcccccC----cccEEeeccccccccc----cccc--CCCC
Q 046086 615 LEVLDLRLCESLRSLPDTI-CSES-LFELRLWGCLNLKNFPEISSS----HIHFLDLYECGIEDMP----LSIE--CLSK 682 (966)
Q Consensus 615 L~~L~L~~n~~l~~lp~~~-~l~~-L~~L~L~~~~~l~~~p~~~~~----~L~~L~L~~n~i~~lp----~~~~--~l~~ 682 (966)
|+.|+|++|.+. .+|..+ .+++ |+.|+|++|... .+|..+.. +|+.|+|++|.+...+ ..+. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999866 889877 7788 999999999866 77876544 4999999999997543 2333 4569
Q ss_pred CCEEeccCCCCcccccccc-cCCCCCcEEEccCCCCCccccccccC-----CCCCCCccEEEcCCCCccccchHhh--cC
Q 046086 683 LNSLDIHNCTRLEYIKSSI-FKLKSLKHIEISSCSNLKRFPEISSS-----CNREGSTEVLHLKGNNLERIPESIR--HL 754 (966)
Q Consensus 683 L~~L~L~~n~~~~~~p~~l-~~l~~L~~L~Ls~~~~l~~~p~~~~~-----~~~~~~L~~L~Ls~n~l~~lp~~i~--~l 754 (966)
|+.|+|++|.+. .+|..+ ..+++|+.|+|++|... .+|..... +..+++|+.|+|++|+|+.+|..+. .+
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 999999999877 566654 48999999999997654 77776543 2233489999999999999999987 99
Q ss_pred CCCCEEeecCCCCccccCCCC---CCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 755 SKLKSLDISYCEWLHTLPELP---RNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 755 ~~L~~L~L~~n~~l~~lp~~~---~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
++|+.|+|++|++.+ +|..+ ++|+.|+++++. ++++|.+ .+.+|.+|.+++.+..+++.
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------~ls~N~l---------~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------DAEGNRI---------LRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------CTTCCBC---------CCCCCTTGGGCSSCCEEECC
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------Ccccccc---------cccChHHHhcCCCCCEEECC
Confidence 999999999999876 66533 455555555554 4566887 78999999999999999883
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.4e-27 Score=286.31 Aligned_cols=329 Identities=17% Similarity=0.162 Sum_probs=173.6
Q ss_pred eecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCccc--c--cccccceEeecCCCCCccc-ccccc
Q 046086 489 RINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTL--N--IRAENLVSLKLPGSNVEQL-WDDVQ 563 (966)
Q Consensus 489 ~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~l--p--~~l~~L~~L~L~~n~i~~l-~~~~~ 563 (966)
.+.+..|.++++|++|++++|....+...+-....+|++|++++|.+..+ | ..+++|++|++++|.++.+ |..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 45555666666666666666633221111111116677777777776665 3 4466777777777777655 33466
Q ss_pred cccccc--eecccCCCCCCCCCCCCCCc----------------------------------------------------
Q 046086 564 NLVNIK--EIDLHGSKQLSKLPDLSQAR---------------------------------------------------- 589 (966)
Q Consensus 564 ~l~~L~--~L~Ls~n~~~~~~p~l~~l~---------------------------------------------------- 589 (966)
.+++|+ .|++++|.+....|......
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 666666 56666665544333211111
Q ss_pred cCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccC--cccEEeec
Q 046086 590 NLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLY 666 (966)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~ 666 (966)
+|+.|++++|......+..++.+++|++|++++|.. ..+|..+ .+++|++|++++|......|..+.. +|+.|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 344444444444444444456666666666666543 3555554 5566666666666544443333222 56666666
Q ss_pred ccccc-cccc-cccCCCCCCEEeccCCCCcccc--cccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCC
Q 046086 667 ECGIE-DMPL-SIECLSKLNSLDIHNCTRLEYI--KSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGN 742 (966)
Q Consensus 667 ~n~i~-~lp~-~~~~l~~L~~L~L~~n~~~~~~--p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n 742 (966)
+|.+. .+|. .+..+++|+.|++++|.+.+.. |..+..+++|++|++++|...+..|..+..+. +|+.|+|++|
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n 410 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP---QLELLDLAFT 410 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT---TCSEEECTTC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc---cCCeEECCCC
Confidence 66554 4443 2555666666666666554443 44555566666666665544444444444333 5556666665
Q ss_pred Ccccc-c-hHhhcCCCCCEEeecCCCCccccCCC---CCCcceeecccCc-------------ccccccCCCCccCceee
Q 046086 743 NLERI-P-ESIRHLSKLKSLDISYCEWLHTLPEL---PRNLYHLEAHHCT-------------LLEALSGFSLTHNNKWI 804 (966)
Q Consensus 743 ~l~~l-p-~~i~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~~~~c~-------------~L~~L~~l~ls~N~l~~ 804 (966)
.++.. | ..+..+++|++|++++|.+.+..|.. +++|+.|++++|. .+++|+.|++++|.+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-- 488 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-- 488 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC--
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc--
Confidence 55532 2 23555555666666655555444432 2445555554432 233444555666665
Q ss_pred cceeecCCCCCCCCccccCCCcEEEE
Q 046086 805 HRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 805 ~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
.+.+|.+|..++.+..+++
T Consensus 489 -------~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 489 -------SSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp -------CEECTTTTTTCTTCCEEEC
T ss_pred -------CccChhhhccccCCCEEEC
Confidence 3344555655555555555
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=286.14 Aligned_cols=334 Identities=16% Similarity=0.162 Sum_probs=203.1
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCcccccc-CCCCC--CceeEEEecCCCCcccc-cccccceEe
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHF-KGVPF--TDVRYFEWHEFPLKTLN-IRAENLVSL 548 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l-~~~~~--~~L~~L~l~~~~l~~lp-~~l~~L~~L 548 (966)
.++.+ |++.+. ...+.+..|.++++|++|++++|.. ..+ |..+. .+|++|++++|.++.+| ..+.+|++|
T Consensus 22 ~L~~L--~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L 95 (520)
T 2z7x_B 22 KTTIL--NISQNY-ISELWTSDILSLSKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL 95 (520)
T ss_dssp TCSEE--ECCSSC-CCCCCHHHHTTCTTCCEEECCSSCC---CEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEE
T ss_pred cccEE--ECCCCc-ccccChhhccccccccEEecCCCcc---CCcChHHhhcccCCCEEecCCCceeecCccccCCccEE
Confidence 44444 444443 4467778899999999999999843 444 33333 89999999999999999 778899999
Q ss_pred ecCCCCCcc--cccccccccccceecccCCCCCCCCCCCCCCccC--cEEeccCccC--CccccccccC-----------
Q 046086 549 KLPGSNVEQ--LWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNL--ERLKLDGCSS--LMETHSSIQY----------- 611 (966)
Q Consensus 549 ~L~~n~i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~~~~--~~~~~~~l~~----------- 611 (966)
+|++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|.. .+..|..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 999999986 56889999999999999998654 346677777 8888888877 4555554444
Q ss_pred ---------------CCcccEEeccCCC-------CCcccCC---------------------------ccCCCcccEEE
Q 046086 612 ---------------LNKLEVLDLRLCE-------SLRSLPD---------------------------TICSESLFELR 642 (966)
Q Consensus 612 ---------------l~~L~~L~L~~n~-------~l~~lp~---------------------------~~~l~~L~~L~ 642 (966)
+++|+.|++++|. ..+.+|. ....++|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 4555555555543 1111110 00123677777
Q ss_pred ecCCCCCCCCcccc-----cC--cccEEeeccccccccc-ccccCC---CCCCEEeccCCCCcccccccccCCCCCcEEE
Q 046086 643 LWGCLNLKNFPEIS-----SS--HIHFLDLYECGIEDMP-LSIECL---SKLNSLDIHNCTRLEYIKSSIFKLKSLKHIE 711 (966)
Q Consensus 643 L~~~~~l~~~p~~~-----~~--~L~~L~L~~n~i~~lp-~~~~~l---~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 711 (966)
+++|...+.+|... .. +|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.... ....+++|++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 77776655666544 22 566666666666 555 233332 44555555555433221 013455555555
Q ss_pred ccCCCCCccccccccCCCCCCCccEEEcCCCCccc---cchHhhcCCCCCEEeecCCCCccccCC----CCCCcceeecc
Q 046086 712 ISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER---IPESIRHLSKLKSLDISYCEWLHTLPE----LPRNLYHLEAH 784 (966)
Q Consensus 712 Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~n~~l~~lp~----~~~~L~~L~~~ 784 (966)
+++|...+.+|..+..+. +|+.|+|++|+++. +|..+..+++|++|+|++|++.+.+|. .+++|+.|+++
T Consensus 331 Ls~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLT---ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp CCSSCCCTTTTTTCCCCS---SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred eECCccChhhhhhhccCC---CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 555554444444443332 55555555555553 333455555555555555555543442 12455555555
Q ss_pred cCcc-------c-ccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 785 HCTL-------L-EALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 785 ~c~~-------L-~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
+|.- + ++|+.|++++|.+ ..+|.++..++.+..+++
T Consensus 408 ~N~l~~~~~~~l~~~L~~L~Ls~N~l----------~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 408 SNILTDTIFRCLPPRIKVLDLHSNKI----------KSIPKQVVKLEALQELNV 451 (520)
T ss_dssp SSCCCGGGGGSCCTTCCEEECCSSCC----------CCCCGGGGGCTTCCEEEC
T ss_pred CCCCCcchhhhhcccCCEEECCCCcc----------cccchhhhcCCCCCEEEC
Confidence 5422 1 3455566666666 466666666666666665
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.1e-27 Score=274.81 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=218.7
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L 545 (966)
.++. ||++.+. ...+.+..|.++++|++|++++|... ..++...+ .+|++|++++|.+..++ ..+.+|
T Consensus 31 ~l~~--L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 31 HVNY--VDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TCCE--EECCSSC-CCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred ccCE--EEecCCc-cCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 3444 4455544 45677889999999999999998432 24443333 89999999999988774 668899
Q ss_pred eEeecCCCCCcc-cccc--cccccccceecccCCCCCCCCCC--CCCCccCcEEeccCccCCccccccccCC--CcccEE
Q 046086 546 VSLKLPGSNVEQ-LWDD--VQNLVNIKEIDLHGSKQLSKLPD--LSQARNLERLKLDGCSSLMETHSSIQYL--NKLEVL 618 (966)
Q Consensus 546 ~~L~L~~n~i~~-l~~~--~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L 618 (966)
++|+|++|+++. ++.. +.++++|++|+|++|.+....|. +.++++|++|++++|.+.+..+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999999999985 4444 88999999999999998877775 8899999999999999888777777665 566666
Q ss_pred eccCCCCCcccCCc---------cCCCcccEEEecCCCCCCCCcccc---------------------------------
Q 046086 619 DLRLCESLRSLPDT---------ICSESLFELRLWGCLNLKNFPEIS--------------------------------- 656 (966)
Q Consensus 619 ~L~~n~~l~~lp~~---------~~l~~L~~L~L~~~~~l~~~p~~~--------------------------------- 656 (966)
++++|.....-+.. ..+++|++|++++|...+..|..+
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 66665533322111 133556666666665433222111
Q ss_pred --------cCcccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccC
Q 046086 657 --------SSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSS 727 (966)
Q Consensus 657 --------~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~ 727 (966)
..+|+.|++++|.++.+ |..++.+++|+.|+|++|.+.+..|..+..+++|++|++++|...+..|..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 12577777777777754 556777778888888887777776777777788888888777665554555554
Q ss_pred CCCCCCccEEEcCCCCcccc-chHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 728 CNREGSTEVLHLKGNNLERI-PESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 728 ~~~~~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
+. +|+.|+|++|.++.+ |..+..+++|++|+|++|++.+..+.. +..+++|+.|++++|.+
T Consensus 346 l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LD---KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI-----------FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CT---TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT-----------TTTCTTCCEEECCSSCB
T ss_pred cc---cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH-----------hccCCcccEEEccCCCc
Confidence 44 778888888877755 556777788888888877765433322 23445566688999988
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=285.31 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=126.4
Q ss_pred cccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecC
Q 046086 479 LDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLP 551 (966)
Q Consensus 479 Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~ 551 (966)
||++.+. ...+.+.+|.++++|++|++++|. +..++...+ .+|++|++++|.+..+| ..+.+|++|+++
T Consensus 33 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 33 LDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp EECCSCC-CCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEccCCc-cCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4555554 456778889999999999999884 455554433 88999999999988887 578899999999
Q ss_pred CCCCccccc-ccccccccceecccCCCCCC-CCC-CCCCCccCcEEeccCccCCccccccccCCCcc----cEEeccCCC
Q 046086 552 GSNVEQLWD-DVQNLVNIKEIDLHGSKQLS-KLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKL----EVLDLRLCE 624 (966)
Q Consensus 552 ~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L----~~L~L~~n~ 624 (966)
+|+++.++. .+.++++|++|++++|.+.. .+| .++++++|++|++++|.+....+..++.+++| +.|++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 999998876 58899999999999998765 456 48889999999999988777777778877777 788888876
Q ss_pred CCcccCCccCCCcccEEEecCC
Q 046086 625 SLRSLPDTICSESLFELRLWGC 646 (966)
Q Consensus 625 ~l~~lp~~~~l~~L~~L~L~~~ 646 (966)
..+..|..+...+|+.|++++|
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESC
T ss_pred ceecCHHHhccCcceeEecccc
Confidence 6555454444445666666554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=9e-27 Score=275.70 Aligned_cols=323 Identities=16% Similarity=0.160 Sum_probs=221.0
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCC-CC--CCceeEEEecCCCCcccc----cccccceEeec
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKG-VP--FTDVRYFEWHEFPLKTLN----IRAENLVSLKL 550 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~-~~--~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L 550 (966)
.+|++.+. ...++...+ ++|+.|++++|.. ..++. .+ ..+|++|++++|.+..++ ..+++|++|+|
T Consensus 4 ~l~ls~n~-l~~ip~~~~---~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 4 LVDRSKNG-LIHVPKDLS---QKTTILNISQNYI---SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp EEECTTSC-CSSCCCSCC---TTCSEEECCSSCC---CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred eEecCCCC-ccccccccc---ccccEEECCCCcc---cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 46666665 445555433 8999999999843 44442 22 288999999999998884 67889999999
Q ss_pred CCCCCcccccccccccccceecccCCCCCC-CCC-CCCCCccCcEEeccCccCCccccccccCCCcc--cEEeccCCCC-
Q 046086 551 PGSNVEQLWDDVQNLVNIKEIDLHGSKQLS-KLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKL--EVLDLRLCES- 625 (966)
Q Consensus 551 ~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~n~~- 625 (966)
++|+++.+|.. .+++|++|+|++|.+.. .+| .++++++|++|++++|.+.+ ..+..+++| +.|++++|..
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99999999887 89999999999998776 456 58999999999999988665 456777777 9999999887
Q ss_pred -CcccCCcc-C--------------------------CCcccEEEecCCC-------CCCCCccc---------------
Q 046086 626 -LRSLPDTI-C--------------------------SESLFELRLWGCL-------NLKNFPEI--------------- 655 (966)
Q Consensus 626 -l~~lp~~~-~--------------------------l~~L~~L~L~~~~-------~l~~~p~~--------------- 655 (966)
.+..|..+ . +++|+.|++++|. ..+.+|..
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 55555544 2 4455555555553 11111100
Q ss_pred -------------ccCcccEEeecccccc-cccccc-----cCCCCCCEEeccCCCCccccc-ccccCC---CCCcEEEc
Q 046086 656 -------------SSSHIHFLDLYECGIE-DMPLSI-----ECLSKLNSLDIHNCTRLEYIK-SSIFKL---KSLKHIEI 712 (966)
Q Consensus 656 -------------~~~~L~~L~L~~n~i~-~lp~~~-----~~l~~L~~L~L~~n~~~~~~p-~~l~~l---~~L~~L~L 712 (966)
...+|++|++++|.++ .+|..+ +.+++|+.|++++|.+ .+| ..+..+ ++|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 0113555555555555 455554 5555555555555544 333 223222 45666666
Q ss_pred cCCCCCccccccccCCCCCCCccEEEcCCCCccc-cchHhhcCCCCCEEeecCCCCcc--ccCC---CCCCcceeecccC
Q 046086 713 SSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER-IPESIRHLSKLKSLDISYCEWLH--TLPE---LPRNLYHLEAHHC 786 (966)
Q Consensus 713 s~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~n~~l~--~lp~---~~~~L~~L~~~~c 786 (966)
++|.... .+. . ..+++|++|+|++|.++. +|..+.++++|++|+|++|++.+ .+|. .+++|+.|+++++
T Consensus 310 ~~n~l~~-~~~-~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 310 SGTRMVH-MLC-P---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp ESSCCCC-CCC-C---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred CCCcccc-ccc-h---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 6654322 110 1 244599999999999995 88899999999999999999875 4443 4578889988764
Q ss_pred c-----------ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 787 T-----------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 787 ~-----------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
. .+++|+.|++++|.+ .+.+|.++. +.+..+++
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNIL---------TDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCC---------CGGGGGSCC--TTCCEEEC
T ss_pred cCCcccccchhccCccCCEEECcCCCC---------Ccchhhhhc--ccCCEEEC
Confidence 3 345677789999998 566776664 45666665
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.5e-26 Score=276.31 Aligned_cols=306 Identities=19% Similarity=0.189 Sum_probs=191.7
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc-cccccceEe
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN-IRAENLVSL 548 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp-~~l~~L~~L 548 (966)
.++.+ |++.+. ...+++..|.++++|++|++++|. +..++...+ .+|++|++++|.++.+| ..+.+|++|
T Consensus 53 ~L~~L--~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L 126 (562)
T 3a79_B 53 RTKAL--SLSQNS-ISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHL 126 (562)
T ss_dssp TCCEE--ECCSSC-CCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEE
T ss_pred CcCEE--ECCCCC-ccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEE
Confidence 44444 455554 457788899999999999999984 455544333 89999999999999999 788999999
Q ss_pred ecCCCCCcccc--cccccccccceecccCCCCCCCCCCCCCCccC--cEEeccCccC--CccccccccCCC---------
Q 046086 549 KLPGSNVEQLW--DDVQNLVNIKEIDLHGSKQLSKLPDLSQARNL--ERLKLDGCSS--LMETHSSIQYLN--------- 613 (966)
Q Consensus 549 ~L~~n~i~~l~--~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~~~~--~~~~~~~l~~l~--------- 613 (966)
+|++|+++.++ ..+.++++|++|++++|.+.. .++..+++| +.|++++|.+ .+..|..+..++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99999999865 689999999999999998654 345566666 9999988877 455454444322
Q ss_pred ------------------------------------------------------------------------cccEEecc
Q 046086 614 ------------------------------------------------------------------------KLEVLDLR 621 (966)
Q Consensus 614 ------------------------------------------------------------------------~L~~L~L~ 621 (966)
+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 56666666
Q ss_pred CCCCCcccCCcc------------------------------------------------------CCCcccEEEecCCC
Q 046086 622 LCESLRSLPDTI------------------------------------------------------CSESLFELRLWGCL 647 (966)
Q Consensus 622 ~n~~l~~lp~~~------------------------------------------------------~l~~L~~L~L~~~~ 647 (966)
+|...+.+|..+ .+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 666555666533 23344455555554
Q ss_pred CCCCCcccccC--cccEEeeccccccccc---ccccCCCCCCEEeccCCCCcccccc-cccCCCCCcEEEccCCCCCccc
Q 046086 648 NLKNFPEISSS--HIHFLDLYECGIEDMP---LSIECLSKLNSLDIHNCTRLEYIKS-SIFKLKSLKHIEISSCSNLKRF 721 (966)
Q Consensus 648 ~l~~~p~~~~~--~L~~L~L~~n~i~~lp---~~~~~l~~L~~L~L~~n~~~~~~p~-~l~~l~~L~~L~Ls~~~~l~~~ 721 (966)
..+..|..+.. +|++|++++|.++.+| ..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|...+.+
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 44434433322 4555555555554332 3345555555555555554443333 2444555555555555444433
Q ss_pred cccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCc
Q 046086 722 PEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNN 801 (966)
Q Consensus 722 p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~ 801 (966)
|..+. ++|+.|+|++|+++.+|..+.++++|++|+|++|++. .+|.. .+..+++|..+++++|.
T Consensus 445 ~~~l~-----~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~----------~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 445 FRCLP-----PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG----------VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GSSCC-----TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT----------STTTCTTCCCEECCSCC
T ss_pred hhhhc-----CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH----------HHhcCCCCCEEEecCCC
Confidence 33221 2566666666666666665556666666666666544 33331 12344556667888888
Q ss_pred e
Q 046086 802 K 802 (966)
Q Consensus 802 l 802 (966)
+
T Consensus 509 ~ 509 (562)
T 3a79_B 509 W 509 (562)
T ss_dssp B
T ss_pred c
Confidence 7
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=287.18 Aligned_cols=281 Identities=16% Similarity=0.096 Sum_probs=212.6
Q ss_pred eecccccccceeeecchhhcCCCCCceEEEecCCCccccccCC-CCC--CceeEEEecCCC-Ccccc----cccccceEe
Q 046086 477 ISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKG-VPF--TDVRYFEWHEFP-LKTLN----IRAENLVSL 548 (966)
Q Consensus 477 i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~-~~~--~~L~~L~l~~~~-l~~lp----~~l~~L~~L 548 (966)
...|.+..+ ...++. ..++|+.|++++|.. ..++. .+. .+|++|++++|. ...++ ..+++|++|
T Consensus 7 ~~~dcs~~~-L~~vP~----lp~~l~~LdLs~N~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCN-LTQVPQ----VLNTTERLLLSFNYI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCC-SSCCCS----SCTTCCEEEEESCCC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCC-CCCCCC----CCCCcCEEECCCCcC---CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 344555443 444554 458999999999844 44433 222 999999999994 55563 678899999
Q ss_pred ecCCCCCccc-ccccccccccceecccCCCCCCCCCC---CCCCccCcEEeccCccCCcccc-ccccCCCcccEEeccCC
Q 046086 549 KLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLPD---LSQARNLERLKLDGCSSLMETH-SSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 549 ~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n 623 (966)
+|++|++..+ |..+.++++|++|+|++|.+...+|. +.++++|++|+|++|.+.+..+ ..++++++|++|+|++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 9999999977 77899999999999999998876653 8999999999999998877654 57999999999999999
Q ss_pred CCCcccCCcc-CC--Cc------------------------------ccEEEecCCCCCCCCcccc--------------
Q 046086 624 ESLRSLPDTI-CS--ES------------------------------LFELRLWGCLNLKNFPEIS-------------- 656 (966)
Q Consensus 624 ~~l~~lp~~~-~l--~~------------------------------L~~L~L~~~~~l~~~p~~~-------------- 656 (966)
.+.+..|..+ .+ ++ |+.|++++|......|..+
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 8765544433 11 23 6666666664332222110
Q ss_pred --------------------------cCcccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcE
Q 046086 657 --------------------------SSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKH 709 (966)
Q Consensus 657 --------------------------~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 709 (966)
..+|+.|++++|.+..+ |..+..+++|+.|+|++|.+.+..|..+.++++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 12577888888888765 456788889999999988888887888888899999
Q ss_pred EEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCc
Q 046086 710 IEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l 768 (966)
|+|++|...+..|..+..+. +|+.|+|++|.++.++. .+..+++|++|+|++|.+.
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~---~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLP---KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCT---TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccCHHHhcCCC---CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 99998776665566666554 89999999999987764 5788899999999988764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2e-26 Score=275.14 Aligned_cols=329 Identities=13% Similarity=0.133 Sum_probs=208.1
Q ss_pred eecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEee
Q 046086 477 ISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLK 549 (966)
Q Consensus 477 i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~ 549 (966)
-.+|++.+. ...++...+ ++|+.|++++|. +..++...+ ++|++|++++|.++.++ ..+++|++|+
T Consensus 34 ~~l~ls~~~-L~~ip~~~~---~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRN-LTHVPKDLP---PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSC-CCSCCTTSC---TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCC-CccCCCCCC---CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 356666654 445655433 899999999984 345553222 89999999999999885 5678999999
Q ss_pred cCCCCCcccccccccccccceecccCCCCCCC-CC-CCCCCccCcEEeccCccCCccccccccCCCcc--cEEeccCCCC
Q 046086 550 LPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSK-LP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKL--EVLDLRLCES 625 (966)
Q Consensus 550 L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L~L~~n~~ 625 (966)
|++|+++.+|.. .+++|++|+|++|++... +| .|+++++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999999999988 899999999999987653 34 589999999999999887653 45555555 9999999877
Q ss_pred --CcccCCcc-C--------------------------CCcccEEE----------------------------------
Q 046086 626 --LRSLPDTI-C--------------------------SESLFELR---------------------------------- 642 (966)
Q Consensus 626 --l~~lp~~~-~--------------------------l~~L~~L~---------------------------------- 642 (966)
.+..|..+ . +++|+.|+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 44444433 1 23334444
Q ss_pred ---------------------ecCCCCCCCCccccc---------------------------------CcccEEeeccc
Q 046086 643 ---------------------LWGCLNLKNFPEISS---------------------------------SHIHFLDLYEC 668 (966)
Q Consensus 643 ---------------------L~~~~~l~~~p~~~~---------------------------------~~L~~L~L~~n 668 (966)
+++|...+.+|.... .+|+.|++++|
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 444433333333220 01333333333
Q ss_pred ccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCc--cccccccCCCCCCCccEEEcCCCCccc
Q 046086 669 GIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLK--RFPEISSSCNREGSTEVLHLKGNNLER 746 (966)
Q Consensus 669 ~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~--~~p~~~~~~~~~~~L~~L~Ls~n~l~~ 746 (966)
.+..++. ...+++|++|++++|.+.+.+|..+.++++|+.|++++|...+ .+|..+.. +++|+.|+|++|.++.
T Consensus 342 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 342 PFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN---MSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT---CTTCCEEECTTSCCBS
T ss_pred CcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC---CCCCCEEECCCCcCCC
Confidence 3322211 1456667777777776666666666677777777777654332 22223333 3367777777777764
Q ss_pred -cchH-hhcCCCCCEEeecCCCCccccCCCC-CCcceeecccCc---------ccccccCCCCccCceeecceeecCCCC
Q 046086 747 -IPES-IRHLSKLKSLDISYCEWLHTLPELP-RNLYHLEAHHCT---------LLEALSGFSLTHNNKWIHRRMYFPGNE 814 (966)
Q Consensus 747 -lp~~-i~~l~~L~~L~L~~n~~l~~lp~~~-~~L~~L~~~~c~---------~L~~L~~l~ls~N~l~~~~~~~~p~~~ 814 (966)
+|.. +..+++|++|+|++|++.+.+|... ++|+.|+++++. .+++|..|++++|++ ..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l----------~~ 487 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL----------KS 487 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC----------CC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC----------CC
Confidence 6643 5566777777777777666665544 466666665432 234455556666666 35
Q ss_pred CCCC-ccccCCCcEEEEE
Q 046086 815 IPKW-FRYQSMGSSVTLE 831 (966)
Q Consensus 815 iP~~-~~~~~~~~~l~~~ 831 (966)
+|.. |..++.+..+++.
T Consensus 488 l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCTTSTTTCTTCCCEECC
T ss_pred CCHHHHhcCCCCCEEEec
Confidence 5554 5555555555553
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4e-26 Score=259.63 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=228.9
Q ss_pred ccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCC
Q 046086 480 DMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPG 552 (966)
Q Consensus 480 d~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~ 552 (966)
+++.+. ...+++..|.++++|++|++++|. +..++...+ .+|++|++++|.+..+| ..+++|++|+|++
T Consensus 51 ~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 51 TFKNST-MRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp EEESCE-ESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EecCCc-hhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 334333 456788888999999999999884 345554332 88999999999988886 4678899999999
Q ss_pred CCCcccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccC
Q 046086 553 SNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLP 630 (966)
Q Consensus 553 n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp 630 (966)
|+++.+|.. +.++++|++|++++|.+....|. +.++++|++|++++|.+... .++.+++|+.|++++|... .++
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~ 202 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA 202 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-ccC
Confidence 999998887 58899999999999987766564 88899999999999876543 3677889999999987643 222
Q ss_pred CccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEE
Q 046086 631 DTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHI 710 (966)
Q Consensus 631 ~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 710 (966)
..++|+.|++++|... .+|.....+|+.|++++|.++..+ .+..+++|+.|+|++|.+.+..|..+..+++|++|
T Consensus 203 ---~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 203 ---IPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp ---CCSSCSEEECCSSCCC-EEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ---CCCcceEEECCCCeee-eccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 3457999999998754 345555568999999999999874 68899999999999999888889999999999999
Q ss_pred EccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccc
Q 046086 711 EISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLE 790 (966)
Q Consensus 711 ~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~ 790 (966)
++++|.. ..+|..... +++|+.|+|++|.++.+|..+..+++|++|+|++|++...-. ..++
T Consensus 278 ~L~~n~l-~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~--------------~~~~ 339 (390)
T 3o6n_A 278 YISNNRL-VALNLYGQP---IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--------------STHH 339 (390)
T ss_dssp ECCSSCC-CEEECSSSC---CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC--------------CTTC
T ss_pred ECCCCcC-cccCcccCC---CCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc--------------hhhc
Confidence 9999654 456655544 349999999999999999999999999999999998653321 2234
Q ss_pred cccCCCCccCce
Q 046086 791 ALSGFSLTHNNK 802 (966)
Q Consensus 791 ~L~~l~ls~N~l 802 (966)
+|..|++++|.+
T Consensus 340 ~L~~L~l~~N~~ 351 (390)
T 3o6n_A 340 TLKNLTLSHNDW 351 (390)
T ss_dssp CCSEEECCSSCE
T ss_pred cCCEEEcCCCCc
Confidence 455567777876
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.2e-26 Score=277.80 Aligned_cols=339 Identities=18% Similarity=0.191 Sum_probs=222.8
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCccc-c---cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTL-N---IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~l-p---~~l~~L 545 (966)
.++.+ |++.+. ...+.+..|.++++|++|++++|. +..++...+ .+|++|++++|.+..+ | ..+.+|
T Consensus 33 ~l~~L--~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 33 STKNI--DLSFNP-LKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TCCEE--ECTTSC-CCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CcCEE--ECCCCC-cCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 44444 555554 557888899999999999999984 455544333 8999999999999988 4 678999
Q ss_pred eEeecCCCCCcccc-cccccccccceecccCCCCCC-CCC-CCCCCccCcEEeccCccCCccccccccCCCccc----EE
Q 046086 546 VSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLS-KLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLE----VL 618 (966)
Q Consensus 546 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~----~L 618 (966)
++|+|++|.++.++ ..+.++++|++|++++|.+.. .+| .++++++|++|++++|.+.+..+..++.+++|+ +|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999999887 669999999999999998775 557 499999999999999987776666555544433 45
Q ss_pred eccCCCCCcccCCccCCCcccEEEecCCCC--------------------------------------------------
Q 046086 619 DLRLCESLRSLPDTICSESLFELRLWGCLN-------------------------------------------------- 648 (966)
Q Consensus 619 ~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~-------------------------------------------------- 648 (966)
++++|...+..+..+...+|+.|++++|..
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 555443322111111222333333333321
Q ss_pred ------------------------------CCCCccccc-CcccEEeecccccccccc--------------------cc
Q 046086 649 ------------------------------LKNFPEISS-SHIHFLDLYECGIEDMPL--------------------SI 677 (966)
Q Consensus 649 ------------------------------l~~~p~~~~-~~L~~L~L~~n~i~~lp~--------------------~~ 677 (966)
...+|.... .+|+.|++++|.+..+|. .+
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhh
Confidence 112221111 145666666666655552 23
Q ss_pred cCCCCCCEEeccCCCCccc--ccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccc--hHhhc
Q 046086 678 ECLSKLNSLDIHNCTRLEY--IKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIP--ESIRH 753 (966)
Q Consensus 678 ~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~i~~ 753 (966)
..+++|+.|++++|.+.+. +|..+..+++|++|++++|. +..+|..+..+ ++|+.|++++|.++.++ ..+..
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGL---EELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTC---TTCCEEECTTSEEESTTTTTTTTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCC---CCCCeeECCCCccCCccChhhhhc
Confidence 3455555555555544433 25556666667777776654 33455444443 37778888887777554 36677
Q ss_pred CCCCCEEeecCCCCccccCCC---CCCcceeecccCc-----------ccccccCCCCccCceeecceeecCCCCCCCCc
Q 046086 754 LSKLKSLDISYCEWLHTLPEL---PRNLYHLEAHHCT-----------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWF 819 (966)
Q Consensus 754 l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~~~~c~-----------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~ 819 (966)
+++|++|++++|.+.+..|.. +++|+.|++++|. .+++|+.|++++|.+ .+.+|.+|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~ 493 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL---------EQISWGVF 493 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC---------CEECTTTT
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC---------CccChhhh
Confidence 788888888888777766653 3567777765542 345566677888877 55667888
Q ss_pred cccCCCcEEEE
Q 046086 820 RYQSMGSSVTL 830 (966)
Q Consensus 820 ~~~~~~~~l~~ 830 (966)
..++.+..+++
T Consensus 494 ~~l~~L~~L~L 504 (606)
T 3vq2_A 494 DTLHRLQLLNM 504 (606)
T ss_dssp TTCTTCCEEEC
T ss_pred cccccCCEEEC
Confidence 88888888877
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.3e-26 Score=269.41 Aligned_cols=308 Identities=17% Similarity=0.130 Sum_probs=223.8
Q ss_pred CCCceEEEecCCCcccccc-CCCCC--CceeEEEecCCCCc-ccc----cccccceEeecCCCCCccc-ccccccccccc
Q 046086 499 PKLRFLKFYGKNKCMLSHF-KGVPF--TDVRYFEWHEFPLK-TLN----IRAENLVSLKLPGSNVEQL-WDDVQNLVNIK 569 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l-~~~~~--~~L~~L~l~~~~l~-~lp----~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~ 569 (966)
++|++|++++|.. ..+ +..+. .+|++|++++|.+. .++ ..+++|++|+|++|+++.+ |..+.++++|+
T Consensus 30 ~~l~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSI---AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCC---CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCcc---CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 7899999999844 444 33333 89999999999875 554 5688999999999999977 67799999999
Q ss_pred eecccCCCCCCCCC-C--CCCCccCcEEeccCccCCcccccc-ccCCCcccEEeccCCCCCcccCCcc---CCCcccEEE
Q 046086 570 EIDLHGSKQLSKLP-D--LSQARNLERLKLDGCSSLMETHSS-IQYLNKLEVLDLRLCESLRSLPDTI---CSESLFELR 642 (966)
Q Consensus 570 ~L~Ls~n~~~~~~p-~--l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~n~~l~~lp~~~---~l~~L~~L~ 642 (966)
+|+|++|.+....| . +..+++|++|+|++|.+.+..|.. +..+++|++|++++|...+..|..+ ...+|+.|+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 99999998776444 3 889999999999999888777766 8999999999999998877777666 337899999
Q ss_pred ecCCCCCCCCccccc----------CcccEEeeccccccc-ccccccC--------------------------------
Q 046086 643 LWGCLNLKNFPEISS----------SHIHFLDLYECGIED-MPLSIEC-------------------------------- 679 (966)
Q Consensus 643 L~~~~~l~~~p~~~~----------~~L~~L~L~~n~i~~-lp~~~~~-------------------------------- 679 (966)
+++|......+.... .+|++|++++|.++. +|..+..
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 999986654433221 379999999998873 3333221
Q ss_pred -------CCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcccc-chHh
Q 046086 680 -------LSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERI-PESI 751 (966)
Q Consensus 680 -------l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~i 751 (966)
.++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..+..+. +|+.|+|++|.++.+ |..+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---HLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSSCCCEECGGGG
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---cCCEEECCCCccCCcChhHh
Confidence 24677777777766666666677777777777777665555555555443 677777777777755 4456
Q ss_pred hcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 752 RHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 752 ~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
.++++|++|+|++|++.+..|..+ ..+++|..|++++|.+ .+..|.+|..++.+..+++.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSF-----------LGLPNLKELALDTNQL---------KSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTT-----------TTCTTCCEEECCSSCC---------SCCCTTTTTTCTTCCEEECC
T ss_pred cCcccCCEEECCCCcccccChhhc-----------cccccccEEECCCCcc---------ccCCHhHhccCCcccEEEcc
Confidence 677777777777776654444433 3345566678888888 33334467788888877764
Q ss_pred c
Q 046086 832 M 832 (966)
Q Consensus 832 l 832 (966)
-
T Consensus 404 ~ 404 (455)
T 3v47_A 404 T 404 (455)
T ss_dssp S
T ss_pred C
Confidence 3
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=274.05 Aligned_cols=335 Identities=19% Similarity=0.158 Sum_probs=206.9
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L 545 (966)
.++.+ |++.+. ...+.+.+|.++++|++|++++|. +..++...+ .+|++|++++|.+..+| ..+.+|
T Consensus 53 ~L~~L--~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 53 ELQVL--DLSRCE-IQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp SCCEE--ECTTCC-CCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CceEE--ECCCCc-CCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 44444 444443 446777788888888888888873 344443322 77888888888877766 567788
Q ss_pred eEeecCCCCCcc--cccccccccccceecccCCCCCCCCC-CCCCCccC----cEEeccCccCC----------------
Q 046086 546 VSLKLPGSNVEQ--LWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNL----ERLKLDGCSSL---------------- 602 (966)
Q Consensus 546 ~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L----~~L~L~~~~~~---------------- 602 (966)
++|++++|.++. +|..+.++++|++|++++|.+....| .++.+++| +.|++++|...
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 888888888775 57778888888888888876554433 24444444 34444443221
Q ss_pred -----------------------------------------------------------------ccccccccCCCcccE
Q 046086 603 -----------------------------------------------------------------METHSSIQYLNKLEV 617 (966)
Q Consensus 603 -----------------------------------------------------------------~~~~~~l~~l~~L~~ 617 (966)
+..|..+..+++|+.
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 123344566788888
Q ss_pred EeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCccc
Q 046086 618 LDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEY 696 (966)
Q Consensus 618 L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~ 696 (966)
|++++|.. ..+|..+ .+ +|++|++++|... .+|.....+|+.|++++|.+...... ..+++|+.|++++|.+.+.
T Consensus 287 L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 287 FSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp EEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEE
T ss_pred EEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcc
Confidence 88887764 4577666 44 7888888887654 55554444677777777666533222 5566677777766655443
Q ss_pred c--cccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccc--hHhhcCCCCCEEeecCCCCccccC
Q 046086 697 I--KSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIP--ESIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 697 ~--p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
. |..+.++++|++|++++|... .+|..+..+. +|+.|++++|.++.++ ..+.++++|++|++++|.+.+..|
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE---QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCT---TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred ccccccccccCccCEEECCCCccc-cccccccccC---CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 2 555666666666666665433 2333344333 6666666666666443 245666666666666666655555
Q ss_pred CC---CCCcceeecccCc-----------ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 773 EL---PRNLYHLEAHHCT-----------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 773 ~~---~~~L~~L~~~~c~-----------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
.. +++|+.|++++|. .+++|+.|++++|.+ .+..|.+|..++.+..+++
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---------EQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC---------CEECTTTTTTCTTCCEEEC
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc---------ccCChhhhhcccCCCEEeC
Confidence 43 3455666655542 234555667777776 4445777777777777766
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=6.6e-26 Score=262.17 Aligned_cols=288 Identities=16% Similarity=0.127 Sum_probs=168.7
Q ss_pred hhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc-cccccceEeecCCCCCcccccccccccccceec
Q 046086 494 TFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEID 572 (966)
Q Consensus 494 ~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~ 572 (966)
.|..+++|++|++++|.. ..++-....+|++|++++|.+..+| ..+++|++|++++|+++.+| +..+++|++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI---TTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp TGGGCTTCSEEECCSSCC---SCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhcccCCCCEEEccCCcC---CeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 577788888888887743 3334222277777888777777777 66777777777777777765 67777777777
Q ss_pred ccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCC
Q 046086 573 LHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNF 652 (966)
Q Consensus 573 Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~ 652 (966)
+++|++.. + +++.+++|++|++++|...+.+ .++.+++|+.|++++|.+.+ +| ...+++|+.|++++|.....
T Consensus 134 l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 134 CARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp CTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEECCSSCCSCC-
T ss_pred CCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec-cccCCCCCEEECcCCcCCee-
Confidence 77776554 3 3666777777777777555554 36666777777777665333 44 22556666666666654332
Q ss_pred cccccCcccEEeecccccccccccccCCCCCCEEeccCCCCccccccc-----------------------------ccC
Q 046086 653 PEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSS-----------------------------IFK 703 (966)
Q Consensus 653 p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~-----------------------------l~~ 703 (966)
+.....+|+.|++++|.++.+| ++.+++|+.|++++|.+.+..+.. +..
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~ 284 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG 284 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccc
Confidence 2222225666666666666555 555556666666655544432222 234
Q ss_pred CCCCcEEEccCCCCCccccccccC-----CCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCc
Q 046086 704 LKSLKHIEISSCSNLKRFPEISSS-----CNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNL 778 (966)
Q Consensus 704 l~~L~~L~Ls~~~~l~~~p~~~~~-----~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L 778 (966)
+++|+.|++++|..++.+|..... +...++|+.|+|++|+|+.+| +.++++|+.|++++|++.+ + ++|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~-l----~~L 357 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD-F----SSV 357 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB-C----TTG
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC-c----ccc
Confidence 455555555555555544432111 111236666666666666654 6666666666666666544 2 223
Q ss_pred ceee-----cccCcccccccCCCCccCce
Q 046086 779 YHLE-----AHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 779 ~~L~-----~~~c~~L~~L~~l~ls~N~l 802 (966)
..|+ +.+++.+..++.+++++|.+
T Consensus 358 ~~L~l~~n~l~g~~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 358 GKIPALNNNFEAEGQTITMPKETLTNNSL 386 (457)
T ss_dssp GGSSGGGTSEEEEEEEEECCCBCCBTTBE
T ss_pred ccccccCCcEEecceeeecCccccccCcE
Confidence 3332 22334455566666666666
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=268.74 Aligned_cols=285 Identities=19% Similarity=0.192 Sum_probs=237.4
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCC-CC--CceeEEEecCCCCcccc----cccccceEeec
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGV-PF--TDVRYFEWHEFPLKTLN----IRAENLVSLKL 550 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~-~~--~~L~~L~l~~~~l~~lp----~~l~~L~~L~L 550 (966)
.||++.+. ...+.+..|.++++|++|++++|.. ..++.. +. .+|++|++++|.+..+| ..+.+|++|+|
T Consensus 36 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 36 LLDLGKNR-IKTLNQDEFASFPHLEELELNENIV---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred EEECCCCc-cceECHhHccCCCCCCEEECCCCcc---CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 34555554 5577888999999999999999843 444333 32 89999999999999998 46789999999
Q ss_pred CCCCCccc-ccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcc
Q 046086 551 PGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRS 628 (966)
Q Consensus 551 ~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~ 628 (966)
++|.+..+ +..+.++++|++|+|++|.+....+ .|.++++|+.|+|++|.+....+..+..+++|+.|+|++|...+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999976 4568999999999999998776666 488999999999999987776667799999999999999886655
Q ss_pred cCCcc-CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccccccc-cccCCCCCCEEeccCCCCcccccccccCC
Q 046086 629 LPDTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIFKL 704 (966)
Q Consensus 629 lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l 704 (966)
.+..+ .+++|+.|++++|.....+|..... +|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.+..+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 55445 8899999999999888887765544 89999999999999885 68899999999999998887777788999
Q ss_pred CCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCcc
Q 046086 705 KSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 705 ~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~ 769 (966)
++|+.|+|++|...+..|..+..+. +|+.|+|++|.++.+|. .+..+++|+.|+|++|++..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLN---YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCT---TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccCCEEECCCCccceECHHHhcCcc---cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999999999887776677776655 99999999999998886 45889999999999998753
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-26 Score=272.98 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=231.8
Q ss_pred cccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecC
Q 046086 479 LDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLP 551 (966)
Q Consensus 479 Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~ 551 (966)
++++.+. ...+++..|.++++|++|++++|. +..++...+ .+|++|++++|.+..+| ..+++|++|+|+
T Consensus 56 l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 56 VTFKNST-MRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp EEESSCE-ESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEeeCCC-CCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 3344443 556888889999999999999884 345554332 88999999999988887 567899999999
Q ss_pred CCCCcccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCccc
Q 046086 552 GSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSL 629 (966)
Q Consensus 552 ~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~l 629 (966)
+|.++.+|.. +.++++|++|+|++|.+....|. |+++++|++|+|++|.+.+. .++.+++|+.|++++|.+.+ +
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-l 207 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-L 207 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-E
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-c
Confidence 9999998887 58899999999999987777664 88999999999999876553 36678899999999886432 2
Q ss_pred CCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcE
Q 046086 630 PDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKH 709 (966)
Q Consensus 630 p~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 709 (966)
+ ...+|+.|++++|... .+|.....+|+.|+|++|.++.. .++..+++|+.|+|++|.+.+..|..+..+++|+.
T Consensus 208 ~---~~~~L~~L~ls~n~l~-~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 A---IPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp E---CCTTCSEEECCSSCCC-EEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred c---CCchhheeeccCCccc-ccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 2 3467999999998754 44444445799999999999875 56889999999999999999999999999999999
Q ss_pred EEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCccc
Q 046086 710 IEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLL 789 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L 789 (966)
|+|++|.. ..+|.....+ ++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+..+.. +
T Consensus 283 L~Ls~N~l-~~l~~~~~~l---~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------~ 344 (597)
T 3oja_B 283 LYISNNRL-VALNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--------------H 344 (597)
T ss_dssp EECTTSCC-CEEECSSSCC---TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCT--------------T
T ss_pred EECCCCCC-CCCCcccccC---CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhh--------------c
Confidence 99999655 4466655443 4999999999999999999999999999999999875432222 2
Q ss_pred ccccCCCCccCce
Q 046086 790 EALSGFSLTHNNK 802 (966)
Q Consensus 790 ~~L~~l~ls~N~l 802 (966)
++|..|++++|.+
T Consensus 345 ~~L~~L~l~~N~~ 357 (597)
T 3oja_B 345 HTLKNLTLSHNDW 357 (597)
T ss_dssp CCCSEEECCSSCE
T ss_pred CCCCEEEeeCCCC
Confidence 3444466777765
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.1e-25 Score=262.32 Aligned_cols=324 Identities=17% Similarity=0.184 Sum_probs=254.8
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC-CceeEEEecCCCCcccc--cccccceEee
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF-TDVRYFEWHEFPLKTLN--IRAENLVSLK 549 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-~~L~~L~l~~~~l~~lp--~~l~~L~~L~ 549 (966)
.++.+.+.-.... .++ .+..+++|++|++++|.. ..++.... .+|++|++++|.+..++ ..+++|++|+
T Consensus 47 ~l~~L~l~~~~i~---~l~--~~~~l~~L~~L~Ls~n~l---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 47 QVTTLQADRLGIK---SID--GVEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp TCCEEECCSSCCC---CCT--TGGGCTTCCEEECCSSCC---CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred cccEEecCCCCCc---cCc--chhhhcCCCEEECCCCcc---CCchhhhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 4555555444332 333 488899999999999854 44443222 89999999999999888 7889999999
Q ss_pred cCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCccc
Q 046086 550 LPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSL 629 (966)
Q Consensus 550 L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~l 629 (966)
+++|.++.++. +.++++|++|++++|.+. .++.+.++++|+.|++.+ .... .+ .+..+++|+.|++++|.. ..+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l-~~~ 192 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKV-SDI 192 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcC-CCC
Confidence 99999999876 899999999999999854 467789999999999974 3333 33 389999999999998874 455
Q ss_pred CCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcE
Q 046086 630 PDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKH 709 (966)
Q Consensus 630 p~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 709 (966)
+....+++|++|++++|......|.....+|+.|++++|.++.++ .+..+++|+.|++++|.+.+..| +..+++|+.
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 554488999999999998777666444558999999999999886 48889999999999998776655 889999999
Q ss_pred EEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccC-CCCCCcceeecccCc-
Q 046086 710 IEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLP-ELPRNLYHLEAHHCT- 787 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~~~~c~- 787 (966)
|++++|...+ +|. +.. +++|+.|+|++|.++.++. +..+++|+.|+|++|++.+..| ..+++|+.|++++|.
T Consensus 270 L~l~~n~l~~-~~~-~~~---l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 270 LKLGANQISN-ISP-LAG---LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EECCSSCCCC-CGG-GTT---CTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccCc-ccc-ccC---CCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCcc
Confidence 9999976554 333 444 3499999999999998875 8899999999999999877655 245688888887653
Q ss_pred -------ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 788 -------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 788 -------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
.+++|..|++++|.+ .+.+| +..++.+..+++
T Consensus 344 ~~~~~l~~l~~L~~L~l~~n~l---------~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 344 SDVSSLANLTNINWLSAGHNQI---------SDLTP--LANLTRITQLGL 382 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSCC---------CBCGG--GTTCTTCCEEEC
T ss_pred CCchhhccCCCCCEEeCCCCcc---------Cccch--hhcCCCCCEEec
Confidence 456677788999998 44445 777788877766
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.7e-25 Score=250.19 Aligned_cols=297 Identities=19% Similarity=0.208 Sum_probs=226.4
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC-CceeEEEecCCCCcccc--cccccceEee
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF-TDVRYFEWHEFPLKTLN--IRAENLVSLK 549 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-~~L~~L~l~~~~l~~lp--~~l~~L~~L~ 549 (966)
.++.+.+.-+... .++ .|..+++|++|++++|.. ..++.... .+|++|++++|.+..+| ..+++|++|+
T Consensus 45 ~L~~L~l~~~~i~---~~~--~~~~~~~L~~L~l~~n~i---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 45 SITKLVVAGEKVA---SIQ--GIEYLTNLEYLNLNGNQI---TDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp TCSEEECCSSCCC---CCT--TGGGCTTCCEEECCSSCC---CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred cccEEEEeCCccc---cch--hhhhcCCccEEEccCCcc---ccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 4455555444332 332 488899999999998844 44444222 88999999999999888 7788999999
Q ss_pred cCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCccc
Q 046086 550 LPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSL 629 (966)
Q Consensus 550 L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~l 629 (966)
+++|.++.++. +..+++|++|++++|.....++.+..+++|++|++++|......+ +..+++|+.|++++|.. ..+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDI 192 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-CCC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-ccc
Confidence 99999998876 889999999999999878887788999999999999987655433 88999999999998864 455
Q ss_pred CCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcE
Q 046086 630 PDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKH 709 (966)
Q Consensus 630 p~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 709 (966)
+....+++|+.|++++|......+.....+|++|++++|.++.+|. +..+++|+.|++++|.+... ..+..+++|++
T Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 269 (347)
T 4fmz_A 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKM 269 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCE
Confidence 5544888999999999876655543334489999999999998877 88999999999999976653 45888999999
Q ss_pred EEccCCCCCccccccccCCCCCCCccEEEcCCCCccc-cchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcc
Q 046086 710 IEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER-IPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTL 788 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~ 788 (966)
|++++|...+ +| .+..+ ++|+.|+|++|.++. .|..+..+++|++|+|++|++.+..| ...
T Consensus 270 L~l~~n~l~~-~~-~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-------------~~~ 331 (347)
T 4fmz_A 270 LNVGSNQISD-IS-VLNNL---SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-------------LAS 331 (347)
T ss_dssp EECCSSCCCC-CG-GGGGC---TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-------------GGG
T ss_pred EEccCCccCC-Ch-hhcCC---CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-------------hhh
Confidence 9999975443 43 23433 489999999999984 45678899999999999998765544 122
Q ss_pred cccccCCCCccCce
Q 046086 789 LEALSGFSLTHNNK 802 (966)
Q Consensus 789 L~~L~~l~ls~N~l 802 (966)
+++|+.|++++|.+
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 34445566777765
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.8e-26 Score=263.29 Aligned_cols=298 Identities=17% Similarity=0.121 Sum_probs=244.5
Q ss_pred hhhcCCCCCceEEEecCCCccccccCCCCC-CceeEEEecCCCCcccc-cccccceEeecCCCCCcccccccccccccce
Q 046086 493 STFSKMPKLRFLKFYGKNKCMLSHFKGVPF-TDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDDVQNLVNIKE 570 (966)
Q Consensus 493 ~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 570 (966)
..+.++++|++|++++|.. ..+|.... .+|++|++++|.++.+| ..+++|++|++++|.++.++ +.++++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l---~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCC---CCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCc---ccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 3678899999999999844 44553222 89999999999999999 88999999999999999985 899999999
Q ss_pred ecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCC
Q 046086 571 IDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLK 650 (966)
Q Consensus 571 L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~ 650 (966)
|++++|++.. +| ++.+++|++|++++|.+.+ + .++.+++|+.|++++|..++.++ ...+++|+.|++++|....
T Consensus 111 L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccce
Confidence 9999998665 55 8999999999999998766 3 38899999999999998888773 3488999999999997554
Q ss_pred CCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCC
Q 046086 651 NFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNR 730 (966)
Q Consensus 651 ~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~ 730 (966)
+|.....+|+.|++++|.++.++ ++.+++|+.|++++|++.+ +| +..+++|+.|++++|...+ +| +..+.
T Consensus 185 -l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~- 254 (457)
T 3bz5_A 185 -LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--VSTLS- 254 (457)
T ss_dssp -CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCT-
T ss_pred -eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--HHHCC-
Confidence 66434448999999999999884 8899999999999998877 66 8899999999999986654 33 22333
Q ss_pred CCCccEEEcCCCCcc-----------ccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCcc
Q 046086 731 EGSTEVLHLKGNNLE-----------RIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTH 799 (966)
Q Consensus 731 ~~~L~~L~Ls~n~l~-----------~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~ 799 (966)
+|+.|++++|+++ .+| +..+++|+.|+|++|+.++.+|....+|+.|++++|++| ..|++++
T Consensus 255 --~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L---~~L~L~~ 327 (457)
T 3bz5_A 255 --KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL---VYLYLNN 327 (457)
T ss_dssp --TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC---CEEECTT
T ss_pred --CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC---CEEECCC
Confidence 5555555444443 444 467899999999999999999988889999998888654 5577999
Q ss_pred CceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 800 NNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 800 N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
|.+ ..+| +.+++.+..+++
T Consensus 328 N~l----------~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 328 TEL----------TELD--VSHNTKLKSLSC 346 (457)
T ss_dssp CCC----------SCCC--CTTCTTCSEEEC
T ss_pred Ccc----------cccc--cccCCcCcEEEC
Confidence 998 4454 888888888877
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.2e-26 Score=264.88 Aligned_cols=265 Identities=19% Similarity=0.170 Sum_probs=112.8
Q ss_pred CceeEEEecCCCCcccc----cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCC-CCCCCccCcEEec
Q 046086 523 TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKL 596 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L 596 (966)
.+|++|++++|.+..++ ..+.+|++|+|++|+++.+|.. +.++++|++|+|++|++....| .|.++++|++|+|
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 44444444444444442 3344444444444444444433 3444444444444444433333 2444444444444
Q ss_pred cCccCCccccccccCCCcccEEeccCCCCCcccCCc-c-CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccc-
Q 046086 597 DGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDT-I-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE- 671 (966)
Q Consensus 597 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~- 671 (966)
++|.+....+..+..+++|+.|+|++|... .+|.. + .+++|+.|++++|......+..+.. +|+.|++++|...
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 444444444444444444444444444322 22221 1 3444444444444433322222211 4444444443322
Q ss_pred cccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcccc-chH
Q 046086 672 DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERI-PES 750 (966)
Q Consensus 672 ~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~ 750 (966)
.+|..+....+|+.|+|++|.+....+..+..+++|+.|+|++|...+..+..+..+. +|+.|+|++|.++.+ |..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL---RLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---TCCEEECCSSCCSEECTTT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---cCCEEECCCCccceECHHH
Confidence 3333333333444444444443332223344444444444444433322222222222 444444444444433 334
Q ss_pred hhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 751 IRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 751 i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
+..+++|+.|+|++|++.+..+. .+..+++|+.|++++|.+
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEES-----------VFHSVGNLETLILDSNPL 332 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGG-----------GBSCGGGCCEEECCSSCE
T ss_pred hcCcccCCEEECCCCcCceeCHh-----------HcCCCcccCEEEccCCCc
Confidence 44444444444444443221111 122344555566777765
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.3e-25 Score=249.20 Aligned_cols=299 Identities=18% Similarity=0.246 Sum_probs=239.0
Q ss_pred hhcCCCCCceEEEecCCCccccccCCCCC-CceeEEEecCCCCcccc--cccccceEeecCCCCCcccccccccccccce
Q 046086 494 TFSKMPKLRFLKFYGKNKCMLSHFKGVPF-TDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWDDVQNLVNIKE 570 (966)
Q Consensus 494 ~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 570 (966)
.+..+++|+.|+++++.. ..++.... ++|++|++++|.+..+| ..+++|++|++++|.++.++ .+.++++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i---~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKV---ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCC---CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cchhcccccEEEEeCCcc---ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 456789999999999843 45554332 89999999999999988 78899999999999999985 6899999999
Q ss_pred ecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCC
Q 046086 571 IDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLK 650 (966)
Q Consensus 571 L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~ 650 (966)
|++++|.+. .++.+..+++|+.|++++|.....++ .+..+++|++|++++|... .++....+++|+.|++++|....
T Consensus 115 L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCC
T ss_pred EECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEccCCcccc
Confidence 999999855 45558999999999999997776655 4899999999999998754 44444488999999999997655
Q ss_pred CCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCC
Q 046086 651 NFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNR 730 (966)
Q Consensus 651 ~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~ 730 (966)
..+.....+|+.|++++|.++.++. +..+++|+.|++++|.+....+ +..+++|++|++++|.... ++ .+. .
T Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~---~ 263 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVK---D 263 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGT---T
T ss_pred cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hHh---c
Confidence 4333333489999999999998876 8899999999999998766544 8899999999999976543 43 233 3
Q ss_pred CCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeec
Q 046086 731 EGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYF 810 (966)
Q Consensus 731 ~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~ 810 (966)
+++|+.|++++|.++.+| .+..+++|+.|++++|++.+..|..+ ..+++|..|++++|.+
T Consensus 264 l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-----------~~l~~L~~L~L~~n~l-------- 323 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVI-----------GGLTNLTTLFLSQNHI-------- 323 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHH-----------HTCTTCSEEECCSSSC--------
T ss_pred CCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHh-----------hccccCCEEEccCCcc--------
Confidence 449999999999999886 68999999999999998776555432 2344556678888887
Q ss_pred CCCCCCCCccccCCCcEEEE
Q 046086 811 PGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 811 p~~~iP~~~~~~~~~~~l~~ 830 (966)
..+|. +..++.+..+++
T Consensus 324 --~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 324 --TDIRP-LASLSKMDSADF 340 (347)
T ss_dssp --CCCGG-GGGCTTCSEESS
T ss_pred --ccccC-hhhhhccceeeh
Confidence 34444 777777777665
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8.1e-26 Score=276.70 Aligned_cols=343 Identities=17% Similarity=0.151 Sum_probs=261.1
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccc
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENL 545 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L 545 (966)
.++.+ |++.+. ...+++..|.++++|++|++++|.. ..++...+ ..|++|++++|.+..+| ..+.+|
T Consensus 26 ~l~~L--~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 26 NITVL--NLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TCSEE--ECCSSC-CCCCCGGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcEE--ECCCCC-CCCcCHHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 44544 444443 4467788899999999999998843 44443333 89999999999999988 468899
Q ss_pred eEeecCCCCCcccc-cccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCcccccccc--CCCcccEEecc
Q 046086 546 VSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQ--YLNKLEVLDLR 621 (966)
Q Consensus 546 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~ 621 (966)
++|+|++|+++.++ ..+.++++|++|+|++|.+....|. +.++++|++|++++|.+.+..+..+. .+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999999887 4689999999999999988777664 88999999999999987766666554 56899999999
Q ss_pred CCCCCcccCCcc-CC---------------------------CcccEEEecCCCCCCCCcccccC----cccEEeecccc
Q 046086 622 LCESLRSLPDTI-CS---------------------------ESLFELRLWGCLNLKNFPEISSS----HIHFLDLYECG 669 (966)
Q Consensus 622 ~n~~l~~lp~~~-~l---------------------------~~L~~L~L~~~~~l~~~p~~~~~----~L~~L~L~~n~ 669 (966)
+|...+..|..+ .+ ++|+.|++++|...+..|..+.. +|+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 987665555433 22 56788888888766665555443 49999999999
Q ss_pred ccccc-ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCc-----cccccc-cCCCCCCCccEEEcCCC
Q 046086 670 IEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLK-----RFPEIS-SSCNREGSTEVLHLKGN 742 (966)
Q Consensus 670 i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~-----~~p~~~-~~~~~~~~L~~L~Ls~n 742 (966)
++.++ ..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|...+ .+|... ..+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 98764 578999999999999999888888899999999999998864332 333311 12223459999999999
Q ss_pred Cccccc-hHhhcCCCCCEEeecCCCCc-cccCCC------CCCcceeecccC----------cccccccCCCCccCceee
Q 046086 743 NLERIP-ESIRHLSKLKSLDISYCEWL-HTLPEL------PRNLYHLEAHHC----------TLLEALSGFSLTHNNKWI 804 (966)
Q Consensus 743 ~l~~lp-~~i~~l~~L~~L~L~~n~~l-~~lp~~------~~~L~~L~~~~c----------~~L~~L~~l~ls~N~l~~ 804 (966)
.++.++ ..+.++++|++|++++|.+. ..++.. .++|+.|++++| ..+++|+.|++++|.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-- 417 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI-- 417 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC--
Confidence 999665 46889999999999999753 233321 146788877654 3466777888999988
Q ss_pred cceeecCCCCCC-CCccccCCCcEEEE
Q 046086 805 HRRMYFPGNEIP-KWFRYQSMGSSVTL 830 (966)
Q Consensus 805 ~~~~~~p~~~iP-~~~~~~~~~~~l~~ 830 (966)
.+.+| ..|..++.+..+++
T Consensus 418 -------~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 418 -------GQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp -------EEECCSGGGTTCTTCCEEEC
T ss_pred -------ccccCcccccCcccccEEec
Confidence 45566 67888888888876
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=6.6e-26 Score=270.23 Aligned_cols=337 Identities=17% Similarity=0.178 Sum_probs=240.3
Q ss_pred cceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCC-CC--CceeEEEecCCCCccc--c---cccc
Q 046086 472 TAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGV-PF--TDVRYFEWHEFPLKTL--N---IRAE 543 (966)
Q Consensus 472 ~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~-~~--~~L~~L~l~~~~l~~l--p---~~l~ 543 (966)
..++.+.+. .+. ...+.+.+|.++++|++|++++|.. ..++.. +. .+|++|++++|.+..+ | ..++
T Consensus 50 ~~L~~L~Ls--~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 50 ANLQVLILK--SSR-INTIEGDAFYSLGSLEHLDLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTCCEEECT--TSC-CCEECTTTTTTCTTCCEEECTTSCC---CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CcccEEECC--CCC-cCccChhhccccccCCEEECCCCcc---CccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 445554444 443 4467778899999999999998843 444433 22 7899999999988754 3 5678
Q ss_pred cceEeecCCCC-Ccccc-cccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 544 NLVSLKLPGSN-VEQLW-DDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 544 ~L~~L~L~~n~-i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
+|++|++++|. +..+| ..+.++++|++|++++|.+....| .+..+++|++|++++|.........++.+++|++|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 89999999887 66776 468888999999999988777666 4666666666666665432221112234555555555
Q ss_pred cCCCCCccc----C------------------------------------------------------------------
Q 046086 621 RLCESLRSL----P------------------------------------------------------------------ 630 (966)
Q Consensus 621 ~~n~~l~~l----p------------------------------------------------------------------ 630 (966)
++|...+.. +
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 555433210 0
Q ss_pred -----------Cc---------c-CCCcccEEEecCCCCCCCCcccc---cCcccEEeeccccccc-cc---ccccCCCC
Q 046086 631 -----------DT---------I-CSESLFELRLWGCLNLKNFPEIS---SSHIHFLDLYECGIED-MP---LSIECLSK 682 (966)
Q Consensus 631 -----------~~---------~-~l~~L~~L~L~~~~~l~~~p~~~---~~~L~~L~L~~n~i~~-lp---~~~~~l~~ 682 (966)
.. . ...+|+.|++++|.. ..+|... ..+|++|++++|.++. +| ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 00 0 124577777777763 4667554 3489999999999985 33 34788999
Q ss_pred CCEEeccCCCCccccc--ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEE
Q 046086 683 LNSLDIHNCTRLEYIK--SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSL 760 (966)
Q Consensus 683 L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L 760 (966)
|+.|+|++|.+.+..+ ..+..+++|++|++++|.. ..+|..+..+. +|+.|+|++|.++.+|..+ .++|++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~---~L~~L~Ls~N~l~~l~~~~--~~~L~~L 436 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPE---KMRFLNLSSTGIRVVKTCI--PQTLEVL 436 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCT---TCCEEECTTSCCSCCCTTS--CTTCSEE
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhhcccc---cccEEECCCCCcccccchh--cCCceEE
Confidence 9999999998765432 4588899999999999754 47887665544 9999999999999888655 3689999
Q ss_pred eecCCCCccccCCCCCCcceeecccCc--------ccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEEE
Q 046086 761 DISYCEWLHTLPELPRNLYHLEAHHCT--------LLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 761 ~L~~n~~l~~lp~~~~~L~~L~~~~c~--------~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
+|++|++.+. +..+++|+.|+++++. .+++|..|++++|.+ .+.+|.+|..++.+..+++.
T Consensus 437 ~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 437 DVSNNNLDSF-SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL---------KSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp ECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCC---------CCCCTTGGGGCTTCCEEECC
T ss_pred ECCCCChhhh-cccCChhcEEECCCCccCcCCCcccCccCCEEecCCCcc---------CCcCHHHHhcCcccCEEEec
Confidence 9999987664 4556789999988763 355677789999999 66777889999888887774
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-25 Score=252.13 Aligned_cols=299 Identities=14% Similarity=0.126 Sum_probs=243.5
Q ss_pred CCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCCCCCcccccc-ccccccc
Q 046086 497 KMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDD-VQNLVNI 568 (966)
Q Consensus 497 ~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L 568 (966)
.+++|+.|++.+| .+..+|...+ ++|++|++++|.+..++ ..+++|++|+|++|.++.++.. +.++++|
T Consensus 43 ~l~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCC---chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 4789999999988 5577887654 89999999999999887 6788999999999999988654 8999999
Q ss_pred ceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCC
Q 046086 569 KEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCL 647 (966)
Q Consensus 569 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~ 647 (966)
++|+|++|.+....+. |.++++|++|++++|.+....+..+..+++|++|++++|...+ ++ ...+++|+.|++++|.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD-LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC-GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc-cccccccceeeccccc
Confidence 9999999986644444 6899999999999998888778889999999999999987544 33 2367899999999986
Q ss_pred CCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccC
Q 046086 648 NLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSS 727 (966)
Q Consensus 648 ~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~ 727 (966)
... ++ ...+|+.|++++|.++.+|... +++|+.|++++|.+.+. ..+..+++|++|++++|...+..|..+..
T Consensus 198 l~~-~~--~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 198 LST-LA--IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CSE-EE--CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc-cC--CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 543 22 1236999999999999887654 58999999999987664 57889999999999998877777777766
Q ss_pred CCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecce
Q 046086 728 CNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRR 807 (966)
Q Consensus 728 ~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~ 807 (966)
+. +|+.|+|++|.++.+|..+..+++|++|+|++|++. .+|..+ ..+++|+.|++++|.+
T Consensus 271 l~---~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-----------~~l~~L~~L~L~~N~i----- 330 (390)
T 3o6n_A 271 MQ---RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-----------PQFDRLENLYLDHNSI----- 330 (390)
T ss_dssp CS---SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-----------HHHTTCSEEECCSSCC-----
T ss_pred cc---cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-----------cccCcCCEEECCCCcc-----
Confidence 55 999999999999999988889999999999999865 344321 2345566678888987
Q ss_pred eecCCCCCCCCccccCCCcEEEEEcCC
Q 046086 808 MYFPGNEIPKWFRYQSMGSSVTLEMPP 834 (966)
Q Consensus 808 ~~~p~~~iP~~~~~~~~~~~l~~~lp~ 834 (966)
..+| +..++.+..+++.-.+
T Consensus 331 -----~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 -----VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -----CCCC--CCTTCCCSEEECCSSC
T ss_pred -----ceeC--chhhccCCEEEcCCCC
Confidence 4555 6667778888775443
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=9.9e-25 Score=267.04 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=46.8
Q ss_pred CcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCC-----CCcc----cc--cC
Q 046086 591 LERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLK-----NFPE----IS--SS 658 (966)
Q Consensus 591 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~-----~~p~----~~--~~ 658 (966)
|+.|++++|.+.+..|..++.+++|++|++++|...+..|..+ ++++|+.|++++|.... .+|. .+ ..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 5555555544444444445555555555555554444444333 44555555555442221 1121 11 11
Q ss_pred cccEEeeccccccccc-ccccCCCCCCEEeccCC
Q 046086 659 HIHFLDLYECGIEDMP-LSIECLSKLNSLDIHNC 691 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n 691 (966)
+|++|++++|.++.++ ..+..+++|+.|++++|
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 5666666666655443 23555555555555544
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.5e-25 Score=254.20 Aligned_cols=285 Identities=20% Similarity=0.197 Sum_probs=185.1
Q ss_pred CCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCcccccccccccccceecccCCCC
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQ 578 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~ 578 (966)
++|+.|++++|.. ..+|.. ..+|++|++++|.+..+|..+.+|++|++++|+++.+| .+.++++|++|++++|++
T Consensus 91 ~~L~~L~l~~n~l---~~lp~~-~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 91 PHLESLVASCNSL---TELPEL-PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp TTCSEEECCSSCC---SSCCCC-CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCcC---Cccccc-cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC
Confidence 5677777776633 334432 26677777777777776644467777777777777776 477777777777777764
Q ss_pred CCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCccccc-
Q 046086 579 LSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISS- 657 (966)
Q Consensus 579 ~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~- 657 (966)
.. +|.. ..+|++|++++|.+.+ +| .++.+++|+.|++++|... .+|... ++|++|++++|... .+|....
T Consensus 166 ~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~~--~~L~~L~l~~n~l~-~lp~~~~l 236 (454)
T 1jl5_A 166 KK-LPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDLP--LSLESIVAGNNILE-ELPELQNL 236 (454)
T ss_dssp SC-CCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCCC--TTCCEEECCSSCCS-SCCCCTTC
T ss_pred cc-cCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCCc--CcccEEECcCCcCC-cccccCCC
Confidence 43 4432 2467777777765544 44 5677777777777766543 344432 46777777777544 5554221
Q ss_pred CcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEE
Q 046086 658 SHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVL 737 (966)
Q Consensus 658 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L 737 (966)
.+|++|++++|.++.+|.. +++|+.|++++|.+.+ +|.. +++|+.|++++|... .+|.. +++|+.|
T Consensus 237 ~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~-~l~~~------~~~L~~L 302 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS-GLSEL------PPNLYYL 302 (454)
T ss_dssp TTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-EESCC------CTTCCEE
T ss_pred CCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC-cccCc------CCcCCEE
Confidence 1677777777777766653 3677777777776544 4443 367777777775543 23321 1377888
Q ss_pred EcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCc------ccccccCCCCccCceeecceeecC
Q 046086 738 HLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCT------LLEALSGFSLTHNNKWIHRRMYFP 811 (966)
Q Consensus 738 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~------~L~~L~~l~ls~N~l~~~~~~~~p 811 (966)
++++|.++.+|. -.++|++|++++|++.+ +|..+++|+.|++++|. .+++|+.|++++|.+
T Consensus 303 ~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l--------- 369 (454)
T 1jl5_A 303 NASSNEIRSLCD---LPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPL--------- 369 (454)
T ss_dssp ECCSSCCSEECC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC---------
T ss_pred ECcCCcCCcccC---CcCcCCEEECCCCcccc-ccccCCcCCEEECCCCccccccchhhhccEEECCCCCC---------
Confidence 888887776652 12588899999988765 77778889988887763 245677788899987
Q ss_pred CC--CCCCCccccCC
Q 046086 812 GN--EIPKWFRYQSM 824 (966)
Q Consensus 812 ~~--~iP~~~~~~~~ 824 (966)
.+ .+|.++.++..
T Consensus 370 ~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 370 REFPDIPESVEDLRM 384 (454)
T ss_dssp SSCCCCCTTCCEEEC
T ss_pred CcCCCChHHHHhhhh
Confidence 44 68888887743
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=9.8e-25 Score=242.17 Aligned_cols=258 Identities=15% Similarity=0.148 Sum_probs=167.8
Q ss_pred CCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCccc-ccccccccccceecc
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDL 573 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L 573 (966)
.+|+.++++++ .+..+|......|++|++++|.++.++ ..+++|++|+|++|.++.+ |..+.++++|++|+|
T Consensus 31 c~l~~l~~~~~---~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDL---GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTS---CCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCC---CccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 35777777665 345566655677777777777777776 4567777777777777766 566777777777777
Q ss_pred cCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCc--ccCCcc-CCCcccEEEecCCCCC
Q 046086 574 HGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLR--SLPDTI-CSESLFELRLWGCLNL 649 (966)
Q Consensus 574 s~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~--~lp~~~-~l~~L~~L~L~~~~~l 649 (966)
++|.+. .+| .+. ++|++|++++|.+....+..+..+++|+.|++++|.... ..|..+ .+++|++|++++|...
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777644 444 232 677777777776666556667777777777777776532 334444 5677777777777543
Q ss_pred CCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCC
Q 046086 650 KNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSC 728 (966)
Q Consensus 650 ~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~ 728 (966)
.+|.....+|+.|++++|.++.+ |..+..+++|+.|+|++|.+.+..+..+..+++|++|++++|.. ..+|..+..+
T Consensus 185 -~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l 262 (330)
T 1xku_A 185 -TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADH 262 (330)
T ss_dssp -SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTC
T ss_pred -cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccC
Confidence 35544445677777777777655 45666777777777777766665555666677777777777543 3566555443
Q ss_pred CCCCCccEEEcCCCCccccchH-hh------cCCCCCEEeecCCCC
Q 046086 729 NREGSTEVLHLKGNNLERIPES-IR------HLSKLKSLDISYCEW 767 (966)
Q Consensus 729 ~~~~~L~~L~Ls~n~l~~lp~~-i~------~l~~L~~L~L~~n~~ 767 (966)
. +|+.|+|++|.++.+|.. +. ..+.|+.|++++|++
T Consensus 263 ~---~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 263 K---YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp S---SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred C---CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 3 677777777777766542 21 235666777777764
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.2e-24 Score=253.50 Aligned_cols=306 Identities=18% Similarity=0.193 Sum_probs=206.4
Q ss_pred cceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC-CceeEEEecCCCCcccc--cccccceEe
Q 046086 472 TAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF-TDVRYFEWHEFPLKTLN--IRAENLVSL 548 (966)
Q Consensus 472 ~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~-~~L~~L~l~~~~l~~lp--~~l~~L~~L 548 (966)
..++.+. ++.+. ...+++ |.++++|++|++++|.. ..++.... .+|++|++++|.+..+| ..+++|++|
T Consensus 68 ~~L~~L~--Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQIN--FSNNQ-LTDITP--LKNLTKLVDILMNNNQI---ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139 (466)
T ss_dssp TTCCEEE--CCSSC-CCCCGG--GTTCTTCCEEECCSSCC---CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cCCCEEE--CCCCc-cCCchh--hhccccCCEEECCCCcc---ccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEE
Confidence 3444444 44443 334443 88999999999998844 33333222 88999999999988888 778899999
Q ss_pred ecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcc
Q 046086 549 KLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRS 628 (966)
Q Consensus 549 ~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~ 628 (966)
++++|.+..++ .+..+++|++|++++ . ...++.+.++++|+.|++++|.... + ..+..+++|++|++++|...+.
T Consensus 140 ~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 140 ELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred ECCCCccCCCh-hhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccc
Confidence 99999988876 477788888888863 2 2334457777888888888776443 2 3477778888888887765443
Q ss_pred cCCccCCCcccEEEecCCCCCCCCccc-ccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCC
Q 046086 629 LPDTICSESLFELRLWGCLNLKNFPEI-SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSL 707 (966)
Q Consensus 629 lp~~~~l~~L~~L~L~~~~~l~~~p~~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 707 (966)
.| ...+++|+.|++++|.... ++.. ...+|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|
T Consensus 215 ~~-~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 215 TP-LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cc-ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 33 3367778888887776443 3322 12267788888877777665 7777778888887776655433 6677777
Q ss_pred cEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCC--CCCCcceeeccc
Q 046086 708 KHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPE--LPRNLYHLEAHH 785 (966)
Q Consensus 708 ~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~--~~~~L~~L~~~~ 785 (966)
+.|++++|...+ ++. +..+ ++|+.|+|++|.++.++. +..+++|+.|++++|++.+. +. .+++|+.|++++
T Consensus 290 ~~L~L~~n~l~~-~~~-~~~l---~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 290 TNLELNENQLED-ISP-ISNL---KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGH 362 (466)
T ss_dssp SEEECCSSCCSC-CGG-GGGC---TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCS
T ss_pred CeEEcCCCcccC-chh-hcCC---CCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCC
Confidence 888877765443 332 3333 377777777777776654 67777777777777776543 32 235677777665
Q ss_pred Cc--------ccccccCCCCccCce
Q 046086 786 CT--------LLEALSGFSLTHNNK 802 (966)
Q Consensus 786 c~--------~L~~L~~l~ls~N~l 802 (966)
|. .+++|..|++++|.+
T Consensus 363 n~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 363 NQISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp SCCCBCGGGTTCTTCCEEECCCEEE
T ss_pred CccCccchhhcCCCCCEEeccCCcc
Confidence 53 345566678899987
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.1e-24 Score=241.84 Aligned_cols=259 Identities=14% Similarity=0.127 Sum_probs=211.6
Q ss_pred CCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCccc-ccccccccccceecc
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDL 573 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L 573 (966)
.+|+.++++++ .+..+|.....+|++|++++|.+..++ ..+++|++|+|++|+++.+ |..+.++++|++|+|
T Consensus 33 c~l~~l~~~~~---~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDL---GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSS---CCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCC---CccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 47899999887 456788777789999999999998886 5788999999999999987 677999999999999
Q ss_pred cCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCC--cccCCccCCCcccEEEecCCCCCC
Q 046086 574 HGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESL--RSLPDTICSESLFELRLWGCLNLK 650 (966)
Q Consensus 574 s~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l--~~lp~~~~l~~L~~L~L~~~~~l~ 650 (966)
++|.+. .+| .+. ++|++|++++|.+....+..+..+++|++|++++|... +..|..+...+|+.|++++|...
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-
Confidence 999865 555 343 89999999999877666667899999999999998764 24555553338999999998754
Q ss_pred CCcccccCcccEEeeccccccccc-ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCC
Q 046086 651 NFPEISSSHIHFLDLYECGIEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCN 729 (966)
Q Consensus 651 ~~p~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~ 729 (966)
.+|.....+|++|++++|.++.++ ..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.. ..+|..+..+.
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCc
Confidence 467666678999999999999776 5788999999999999988887777889999999999999654 47887776655
Q ss_pred CCCCccEEEcCCCCccccchH-hhc------CCCCCEEeecCCCCc
Q 046086 730 REGSTEVLHLKGNNLERIPES-IRH------LSKLKSLDISYCEWL 768 (966)
Q Consensus 730 ~~~~L~~L~Ls~n~l~~lp~~-i~~------l~~L~~L~L~~n~~l 768 (966)
+|+.|+|++|.++.+|.. +.. .++|+.|++++|++.
T Consensus 265 ---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 265 ---LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp ---TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ---cCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 899999999999988753 332 467899999999865
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.4e-25 Score=263.18 Aligned_cols=296 Identities=15% Similarity=0.133 Sum_probs=242.5
Q ss_pred CCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCCCCCcccccc-ccccccc
Q 046086 497 KMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDD-VQNLVNI 568 (966)
Q Consensus 497 ~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L 568 (966)
.+++++.|++.+| .+..+|...+ ++|++|++++|.+..+| ..+.+|++|+|++|.++.+|.. +.++++|
T Consensus 49 ~l~~l~~l~l~~~---~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCC---CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4688999999987 5567777654 89999999999999887 6788999999999999988765 7999999
Q ss_pred ceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCC
Q 046086 569 KEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCL 647 (966)
Q Consensus 569 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~ 647 (966)
++|+|++|.+....+. |+++++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+ +| ...+++|+.|++++|.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD-LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC-GGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC-hhhhhhhhhhhcccCc
Confidence 9999999987755555 6899999999999999888888899999999999999987554 33 2367899999999986
Q ss_pred CCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccC
Q 046086 648 NLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSS 727 (966)
Q Consensus 648 ~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~ 727 (966)
... ++ ...+|+.|++++|.++.+|..+ .++|+.|+|++|.+.+ +..+..+++|+.|+|++|...+..|..+..
T Consensus 204 l~~-l~--~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 204 LST-LA--IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CSE-EE--CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc-cc--CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 543 22 1236999999999999887755 4799999999998776 367889999999999999888877887776
Q ss_pred CCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecce
Q 046086 728 CNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRR 807 (966)
Q Consensus 728 ~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~ 807 (966)
+. +|+.|+|++|.++.+|..+..+++|+.|+|++|++. .+|..+ ..+++|..|++++|.+
T Consensus 277 l~---~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-----------~~l~~L~~L~L~~N~l----- 336 (597)
T 3oja_B 277 MQ---RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-----------PQFDRLENLYLDHNSI----- 336 (597)
T ss_dssp CS---SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-----------HHHTTCSEEECCSSCC-----
T ss_pred cc---CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-----------ccCCCCCEEECCCCCC-----
Confidence 65 999999999999999988889999999999999876 444321 2345566688888987
Q ss_pred eecCCCCCCCCccccCCCcEEEEE
Q 046086 808 MYFPGNEIPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 808 ~~~p~~~iP~~~~~~~~~~~l~~~ 831 (966)
..+| +..++.+..+++.
T Consensus 337 -----~~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 337 -----VTLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp -----CCCC--CCTTCCCSEEECC
T ss_pred -----CCcC--hhhcCCCCEEEee
Confidence 4444 5556677777764
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.4e-25 Score=246.71 Aligned_cols=243 Identities=16% Similarity=0.195 Sum_probs=194.0
Q ss_pred ccceEeecCCCCCc---ccccccccccccceecccC-CCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccE
Q 046086 543 ENLVSLKLPGSNVE---QLWDDVQNLVNIKEIDLHG-SKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEV 617 (966)
Q Consensus 543 ~~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~Ls~-n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 617 (966)
.+++.|+|++|+++ .+|..+.++++|++|+|++ |.+.+.+| .++++++|++|+|++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45677777777776 4677788888888888884 76666666 4777888888888887777777777888888888
Q ss_pred EeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccC---cccEEeecccccc-cccccccCCCCCCEEeccCCC
Q 046086 618 LDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSS---HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHNCT 692 (966)
Q Consensus 618 L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~---~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~ 692 (966)
|+|++|.+.+.+|..+ .+++|++|++++|...+.+|..+.. +|+.|++++|.++ .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888877776777766 7778888888888766666655443 6889999999988 6788888887 9999999999
Q ss_pred CcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCCCCcccc
Q 046086 693 RLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYCEWLHTL 771 (966)
Q Consensus 693 ~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~l 771 (966)
+.+..|..+..+++|+.|++++|...+.+|. +.. +++|++|+|++|.++ .+|..+..+++|++|+|++|++.+.+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL---SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC---CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc---cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9888999999999999999999877666665 333 459999999999999 89999999999999999999999888
Q ss_pred CCCCCCcceeecccCcccccccCCCCccCce
Q 046086 772 PELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 772 p~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
|.. ..+++|..+++++|..
T Consensus 285 p~~------------~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 285 PQG------------GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCS------------TTGGGSCGGGTCSSSE
T ss_pred CCC------------ccccccChHHhcCCCC
Confidence 864 2344555677888873
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=7e-25 Score=242.55 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=147.2
Q ss_pred cccceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 542 AENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 542 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
..+++.|+|++|+++.+|..+.++++|++|+|++|.+. .+| .++++++|++|+|++|.+. .+|..++.+++|++|+|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45778888888888888888888888888888888766 666 4788888888888887665 77888888888888888
Q ss_pred cCCCCCcccCCccC----------CCcccEEEecCCCCCCCCcccccC--cccEEeecccccccccccccCCCCCCEEec
Q 046086 621 RLCESLRSLPDTIC----------SESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIEDMPLSIECLSKLNSLDI 688 (966)
Q Consensus 621 ~~n~~l~~lp~~~~----------l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L 688 (966)
++|+.++.+|..+. +++|++|++++|... .+|..+.. +|++|+|++|.++.+|..++.+++|+.|+|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 88888888887652 555666666555433 44443322 566666666666666656666666666666
Q ss_pred cCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCC
Q 046086 689 HNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYC 765 (966)
Q Consensus 689 ~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n 765 (966)
++|.+.+.+|..+..+++|++|++++|+..+.+|..+..+. +|+.|+|++|++. .+|.++.++++|+.+++..+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 66666666666666666666666666666666665554443 5666666665544 56666666666666665544
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.1e-24 Score=245.46 Aligned_cols=288 Identities=18% Similarity=0.206 Sum_probs=180.6
Q ss_pred CCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc--cccccceEeecCCCCCcccccccccccccceecccC
Q 046086 498 MPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHG 575 (966)
Q Consensus 498 l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~ 575 (966)
+++|+.|++++|.. ..++... .+|++|++++|.++.+| ..+++|++|++++|+++.+|..+ .+|++|++++
T Consensus 110 ~~~L~~L~l~~n~l---~~l~~~~-~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 110 PQSLKSLLVDNNNL---KALSDLP-PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp CTTCCEEECCSSCC---SCCCSCC-TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS
T ss_pred cCCCcEEECCCCcc---CcccCCC-CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC
Confidence 48999999999844 3444322 79999999999999999 78899999999999999988754 5999999999
Q ss_pred CCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCccc
Q 046086 576 SKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEI 655 (966)
Q Consensus 576 n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~ 655 (966)
|.+.. +|+++++++|++|++++|.+.+ +|.. .++|++|++++|... .+|....+++|++|++++|... .+|..
T Consensus 183 n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~-~l~~~ 255 (454)
T 1jl5_A 183 NQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDL 255 (454)
T ss_dssp SCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS-SCCSC
T ss_pred CcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC-ccccc
Confidence 98665 7889999999999999997654 5543 358999999999754 8887558999999999999755 46654
Q ss_pred ccCcccEEeecccccccccccccCCCCCCEEeccCCCCcc--cccccc-------------cCC-CCCcEEEccCCCCCc
Q 046086 656 SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLE--YIKSSI-------------FKL-KSLKHIEISSCSNLK 719 (966)
Q Consensus 656 ~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~--~~p~~l-------------~~l-~~L~~L~Ls~~~~l~ 719 (966)
. .+|+.|++++|.++.+|.. +++|+.|++++|.+.+ .+|..+ ..+ ++|+.|++++|...
T Consensus 256 ~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~- 330 (454)
T 1jl5_A 256 P-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI- 330 (454)
T ss_dssp C-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-
T ss_pred c-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-
Confidence 3 5799999999999998874 4788889998887655 222111 111 24444444443322
Q ss_pred cccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccC-----cccccccC
Q 046086 720 RFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHC-----TLLEALSG 794 (966)
Q Consensus 720 ~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c-----~~L~~L~~ 794 (966)
.+|.. +++|+.|++++|.++.+|. .+++|++|++++|++.+ +|..|..+..|....+ ..+++|+.
T Consensus 331 ~lp~~------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~-l~~ip~~l~~L~~n~~~~~i~~~~~~L~~ 400 (454)
T 1jl5_A 331 ELPAL------PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQ 400 (454)
T ss_dssp CCCCC------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCCCCTTCCEEECCC--------------
T ss_pred ccccc------CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc-CCCChHHHHhhhhcccccccccccCcCCE
Confidence 23321 1255555555555555554 34555555555555443 2222223333321100 01255677
Q ss_pred CCCccCceeecceeecCCC--CCCCCccccC
Q 046086 795 FSLTHNNKWIHRRMYFPGN--EIPKWFRYQS 823 (966)
Q Consensus 795 l~ls~N~l~~~~~~~~p~~--~iP~~~~~~~ 823 (966)
|++++|.+ .+ .||.++..+.
T Consensus 401 L~ls~N~l---------~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 401 LHVETNPL---------REFPDIPESVEDLR 422 (454)
T ss_dssp -------------------------------
T ss_pred EECCCCcC---------CccccchhhHhhee
Confidence 78888877 33 6777665543
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2e-24 Score=239.74 Aligned_cols=288 Identities=17% Similarity=0.145 Sum_probs=228.4
Q ss_pred CceeEEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCc
Q 046086 523 TDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGC 599 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~ 599 (966)
.+++.++++++.+..+| ...++|++|+|++|+++.++. .+.++++|++|+|++|.+....| .+.++++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 57899999999999999 556899999999999999877 59999999999999999887767 4999999999999998
Q ss_pred cCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCC--CCccccc--CcccEEeeccccccccc
Q 046086 600 SSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLK--NFPEISS--SHIHFLDLYECGIEDMP 674 (966)
Q Consensus 600 ~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~--~~p~~~~--~~L~~L~L~~n~i~~lp 674 (966)
.+. .+|..+. ++|++|++++|...+..+..+ .+++|++|++++|.... ..+..+. .+|++|++++|.++.+|
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 755 5666654 899999999987654444334 88999999999998643 3343333 38999999999999999
Q ss_pred ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcC
Q 046086 675 LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHL 754 (966)
Q Consensus 675 ~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l 754 (966)
..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|...+..+..+..+. +|+.|+|++|.++.+|.++..+
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~lp~~l~~l 262 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP---HLRELHLNNNKLVKVPGGLADH 262 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST---TCCEEECCSSCCSSCCTTTTTC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC---CCCEEECCCCcCccCChhhccC
Confidence 8764 8999999999998888889999999999999999877665555666554 9999999999999999999999
Q ss_pred CCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 755 SKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 755 ~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
++|++|+|++|++.+..+..+..... .....++..+++++|.+ .+ ....|.+|........+++
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~-----~~~~~~l~~l~l~~N~~-----~~--~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGY-----NTKKASYSGVSLFSNPV-----QY--WEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSC-----CTTSCCCSEEECCSSSS-----CG--GGSCGGGGTTCCCGGGEEC
T ss_pred CCcCEEECCCCcCCccChhhcCCccc-----ccccccccceEeecCcc-----cc--cccCccccccccceeEEEe
Confidence 99999999999976554444322211 11234455577888876 00 0234566766666666554
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.2e-24 Score=241.60 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=229.0
Q ss_pred CceeEEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCc
Q 046086 523 TDVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGC 599 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~ 599 (966)
..++.++++++.++.+| ...++|++|+|++|+++.++. .+.++++|++|+|++|++....| .+.++++|++|++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46899999999999999 556899999999999998864 69999999999999999777666 4999999999999998
Q ss_pred cCCccccccccCCCcccEEeccCCCCCcccCCc-c-CCCcccEEEecCCCCCC--CCcccccC-cccEEeeccccccccc
Q 046086 600 SSLMETHSSIQYLNKLEVLDLRLCESLRSLPDT-I-CSESLFELRLWGCLNLK--NFPEISSS-HIHFLDLYECGIEDMP 674 (966)
Q Consensus 600 ~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~-~-~l~~L~~L~L~~~~~l~--~~p~~~~~-~L~~L~L~~n~i~~lp 674 (966)
.+. .+|..+. ++|++|++++|... .+|.. + .+++|++|++++|.... ..|..+.. +|+.|++++|.++.+|
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 755 6666655 89999999998755 55543 4 89999999999998642 34444333 7999999999999999
Q ss_pred ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcC
Q 046086 675 LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHL 754 (966)
Q Consensus 675 ~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l 754 (966)
..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|...+..|..+..+. +|+.|+|++|.++.+|..+..+
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP---TLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT---TCCEEECCSSCCCBCCTTGGGC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC---CCCEEECCCCcCeecChhhhcC
Confidence 8765 7999999999999888888999999999999999877666555666554 9999999999999999999999
Q ss_pred CCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCCccccCCCcEEEE
Q 046086 755 SKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQSMGSSVTL 830 (966)
Q Consensus 755 ~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~~~~~~l~~ 830 (966)
++|++|++++|++.+..+..+..... ......+..+++++|.+ ......|.+|..++.+..+++
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~N~~-------~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGF-----GVKRAYYNGISLFNNPV-------PYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSC-----CSSSCCBSEEECCSSSS-------CGGGSCGGGGTTBCCSTTEEC
T ss_pred ccCCEEECCCCCCCccChhHcccccc-----ccccccccceEeecCcc-------cccccCcccccccchhhhhhc
Confidence 99999999999976554443332210 01123455567778876 001345567777777776655
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2e-25 Score=245.35 Aligned_cols=244 Identities=16% Similarity=0.165 Sum_probs=200.8
Q ss_pred ceeEEEecCCCCc---ccc---cccccceEeecCC-CCCc-ccccccccccccceecccCCCCCCCCCC-CCCCccCcEE
Q 046086 524 DVRYFEWHEFPLK---TLN---IRAENLVSLKLPG-SNVE-QLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERL 594 (966)
Q Consensus 524 ~L~~L~l~~~~l~---~lp---~~l~~L~~L~L~~-n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L 594 (966)
.++.|+++++.+. .+| ..+++|++|+|++ |++. .+|..+.++++|++|+|++|.+.+.+|. +.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555555 344 5677888888884 7776 6788888899999999999887767774 8888999999
Q ss_pred eccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCC-cccEEEecCCCCCCCCcccccC-cccEEeecccccc
Q 046086 595 KLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSE-SLFELRLWGCLNLKNFPEISSS-HIHFLDLYECGIE 671 (966)
Q Consensus 595 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~-~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~ 671 (966)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ .++ +|++|++++|...+.+|..+.. +|+.|++++|.++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 999988887888888899999999999888777888777 666 8899999998877677766554 6999999999998
Q ss_pred -cccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccch
Q 046086 672 -DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPE 749 (966)
Q Consensus 672 -~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~ 749 (966)
..|..+..+++|+.|+|++|.+.+.+|. +..+++|++|++++|...+.+|..+..+. +|+.|+|++|.++ .+|.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCC
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc---CCCEEECcCCcccccCCC
Confidence 4577899999999999999988877766 88899999999999988878998887765 9999999999999 7776
Q ss_pred HhhcCCCCCEEeecCCCCccccC
Q 046086 750 SIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 750 ~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
. .++++|+.|++++|+.+...|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEESTT
T ss_pred C-ccccccChHHhcCCCCccCCC
Confidence 5 889999999999998654433
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.2e-23 Score=255.17 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=103.4
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeec
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKL 550 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L 550 (966)
.||++.+. ...+++.+|.++++|++|++++| .+..++.+.+ .+|++|++++|.++.+| ..+.+|++|+|
T Consensus 56 ~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N---~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 56 NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred EEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC---cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 45666665 66888999999999999999998 5567776655 89999999999999998 46889999999
Q ss_pred CCCCCcccccc-cccccccceecccCCCCCCC-CCC-CCCCccCcEEeccCccCCcccc
Q 046086 551 PGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSK-LPD-LSQARNLERLKLDGCSSLMETH 606 (966)
Q Consensus 551 ~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~~~~~~~~~ 606 (966)
++|+++.+|.. ++++++|++|+|++|.+... .|. ++.+++|++|++++|.+.+..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99999999865 89999999999999987653 454 7889999999999887554433
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.7e-23 Score=231.45 Aligned_cols=212 Identities=26% Similarity=0.383 Sum_probs=189.5
Q ss_pred cccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEE
Q 046086 564 NLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFEL 641 (966)
Q Consensus 564 ~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L 641 (966)
...+++.|+|++|.+. .+| .+.++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+ .+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999876 555 5889999999999999876 89999999999999999999765 888877 89999999
Q ss_pred EecCCCCCCCCcccc-----------cCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEE
Q 046086 642 RLWGCLNLKNFPEIS-----------SSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHI 710 (966)
Q Consensus 642 ~L~~~~~l~~~p~~~-----------~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 710 (966)
++++|...+.+|... ..+|++|+|++|.++.+|..++.+++|+.|+|++|.+.+ +|..+..+++|++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 999999999998765 448999999999999999999999999999999998774 67789999999999
Q ss_pred EccCCCCCccccccccCCCCCCCccEEEcCCCCcc-ccchHhhcCCCCCEEeecCCCCccccCCCCCCcceee
Q 046086 711 EISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-RIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLE 782 (966)
Q Consensus 711 ~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~ 782 (966)
++++|+..+.+|..+..+. +|+.|+|++|++. .+|..+.++++|++|+|++|++++.+|..+.+|..|.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRA---PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCC---CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ECcCCcchhhhHHHhcCCC---CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 9999999999998877665 9999999998776 8999999999999999999999999998776555443
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=5e-23 Score=249.79 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=108.2
Q ss_pred CCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCCCCCcccccc-cccccccce
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKE 570 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~ 570 (966)
++++.|+|++| .+..++...+ ++|++|++++|.++.+| ..+++|++|+|++|+|+.+|.+ |.++++|++
T Consensus 52 ~~~~~LdLs~N---~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCC---CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 47999999999 4567776544 89999999999999998 4689999999999999999865 899999999
Q ss_pred ecccCCCCCCCCCC-CCCCccCcEEeccCccCCc-cccccccCCCcccEEeccCCCCC
Q 046086 571 IDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLM-ETHSSIQYLNKLEVLDLRLCESL 626 (966)
Q Consensus 571 L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~l 626 (966)
|+|++|++....+. |+++++|++|+|++|.+.. ..|..++.+++|++|++++|.+.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999987665553 8999999999999998755 46788999999999999988643
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=9.9e-23 Score=236.24 Aligned_cols=239 Identities=22% Similarity=0.204 Sum_probs=185.3
Q ss_pred eeEEEecCCCCcccc-cccccceEeecCCCCCccc-ccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccC
Q 046086 525 VRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSS 601 (966)
Q Consensus 525 L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~ 601 (966)
.+.++.++..+..+| ..+.+|++|+|++|+|+.+ +..+.++++|++|+|++|.+....| .|.++++|++|+|++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 445666677777777 4556788888888888776 4457788888888888887665554 377788888888888776
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCC-cc-CCCcccEEEecCCCCCCCCccccc---CcccEEeeccccccccccc
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPD-TI-CSESLFELRLWGCLNLKNFPEISS---SHIHFLDLYECGIEDMPLS 676 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~---~~L~~L~L~~n~i~~lp~~ 676 (966)
....+..+..+++|++|+|++|.+. .+|. .+ .+++|+.|++++|..++.++.... .+|++|+|++|.++.+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence 6655566788888888888877644 4444 33 778888888888777776665322 278899999999988874
Q ss_pred ccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCC
Q 046086 677 IECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLS 755 (966)
Q Consensus 677 ~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~ 755 (966)
+..+++|+.|+|++|.+.+..|..+.++++|+.|++++|......|..+..+. +|+.|+|++|+|+.+|. .+..++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA---SLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSSCCSCCCTTSSTTCT
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC---CCCEEECCCCcCCccChHHhcccc
Confidence 88899999999999998888889999999999999999877766666666554 89999999999998885 457899
Q ss_pred CCCEEeecCCCCc
Q 046086 756 KLKSLDISYCEWL 768 (966)
Q Consensus 756 ~L~~L~L~~n~~l 768 (966)
+|+.|+|++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 9999999999864
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=235.08 Aligned_cols=239 Identities=20% Similarity=0.192 Sum_probs=163.4
Q ss_pred eeEEEecCCCCcccc-cccccceEeecCCCCCcccc-cccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccC
Q 046086 525 VRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSS 601 (966)
Q Consensus 525 L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~ 601 (966)
.+.++..+..++.+| ....+++.|+|++|+++.++ ..+.++++|++|+|++|.+....+ .|.++++|++|+|++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 344555555566666 44456666666666666554 346666666666666665444333 266666666666666655
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCC-cc-CCCcccEEEecCCCCCCCCccccc---CcccEEeeccccccccccc
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPD-TI-CSESLFELRLWGCLNLKNFPEISS---SHIHFLDLYECGIEDMPLS 676 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~---~~L~~L~L~~n~i~~lp~~ 676 (966)
....+..+..+++|++|+|++|.+. .+|. .+ .+++|++|++++|..+..++.... .+|++|+|++|.++.+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 5444445666666666666666533 3333 23 566666666666655555554221 267888888888888874
Q ss_pred ccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCC
Q 046086 677 IECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLS 755 (966)
Q Consensus 677 ~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~ 755 (966)
+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|......|..+..+. +|+.|+|++|+++.+|. .+..++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ---SLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT---TCCEEECTTSCCCCCCTTTTSSCT
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC---CCCEEECCCCCCCccChhHhcccc
Confidence 78889999999999988888888899999999999999877666666565544 89999999999998875 457899
Q ss_pred CCCEEeecCCCCc
Q 046086 756 KLKSLDISYCEWL 768 (966)
Q Consensus 756 ~L~~L~L~~n~~l 768 (966)
+|+.|+|++|++.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 9999999999864
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.5e-23 Score=228.23 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=139.7
Q ss_pred EEEecCCCCcccc-cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCC--C-CCCCCccCcEEeccCccC
Q 046086 527 YFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKL--P-DLSQARNLERLKLDGCSS 601 (966)
Q Consensus 527 ~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~--p-~l~~l~~L~~L~L~~~~~ 601 (966)
.++++++.++.+| ..+.+|++|+|++|+++.+|.. +.++++|++|+|++|.+.... | .+..+++|++|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 3455555555555 3345566666666666666554 456666666666666543221 1 244556666666666543
Q ss_pred CccccccccCCCcccEEeccCCCCCcccC-Ccc-CCCcccEEEecCCCCCCCCcccccC--cccEEeeccccccc--ccc
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLP-DTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIED--MPL 675 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~--lp~ 675 (966)
. .+|..+..+++|++|++++|...+..+ ..+ .+++|++|++++|......|..+.. +|++|++++|.++. +|.
T Consensus 91 ~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 3 345556666666666666654332222 122 5566666666666554444443332 56777777776664 566
Q ss_pred cccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccc-cchHhhcC
Q 046086 676 SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER-IPESIRHL 754 (966)
Q Consensus 676 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-lp~~i~~l 754 (966)
.+..+++|+.|+|++|.+.+..|..+..+++|++|++++|...+..+..+..+ ++|+.|+|++|.++. .|..+..+
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC---TTCCEEECTTSCCCBCSSSSCCCC
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc---ccCCEeECCCCCCcccCHHHHHhh
Confidence 67777777777777776666666667777777777777765444333333333 377777777777763 34456666
Q ss_pred C-CCCEEeecCCCCcc
Q 046086 755 S-KLKSLDISYCEWLH 769 (966)
Q Consensus 755 ~-~L~~L~L~~n~~l~ 769 (966)
+ +|++|+|++|++..
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 3 77777777777654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=232.13 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=117.2
Q ss_pred EEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCcc
Q 046086 528 FEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLME 604 (966)
Q Consensus 528 L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~ 604 (966)
.+.+++.++.+| ...++|++|++++|+++.++. .+.++++|++|+|++|.+....|. |.++++|++|++++|.+...
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 344444455555 333455555555555555544 355555555555555554443332 55555555555555544433
Q ss_pred ccccccCCCcccEEeccCCCCCcccCC--cc-CCCcccEEEecCCCCCCCCc-ccccC--cccEEeecccccccc-cccc
Q 046086 605 THSSIQYLNKLEVLDLRLCESLRSLPD--TI-CSESLFELRLWGCLNLKNFP-EISSS--HIHFLDLYECGIEDM-PLSI 677 (966)
Q Consensus 605 ~~~~l~~l~~L~~L~L~~n~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p-~~~~~--~L~~L~L~~n~i~~l-p~~~ 677 (966)
.+..++.+++|++|++++|.. ..+|. .+ .+++|++|++++|.....++ ..+.. +|++|++++|.++.+ |..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 333355555555555555542 23443 22 45555555555554333332 22211 555566666655544 4455
Q ss_pred cCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc-----ccchHhh
Q 046086 678 ECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE-----RIPESIR 752 (966)
Q Consensus 678 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~-----~lp~~i~ 752 (966)
..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+..+........++.++|+++.++ .+|..+.
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 56666666666666543222222334566666666665444333222222222234555555555444 3555556
Q ss_pred cCCCCCEEeecCCCCc
Q 046086 753 HLSKLKSLDISYCEWL 768 (966)
Q Consensus 753 ~l~~L~~L~L~~n~~l 768 (966)
++++|++|+|++|++.
T Consensus 275 ~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 275 QISGLLELEFSRNQLK 290 (353)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred cccCCCEEECCCCCCC
Confidence 6666666666666544
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.4e-22 Score=237.85 Aligned_cols=264 Identities=19% Similarity=0.186 Sum_probs=209.0
Q ss_pred ecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCcc
Q 046086 478 SLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQ 557 (966)
Q Consensus 478 ~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~ 557 (966)
.++++.+. ...++...+ ++|+.|++++|. +..+|. ..++|++|++++|.++.+|..+.+|++|+|++|+++.
T Consensus 44 ~L~ls~n~-L~~lp~~l~---~~L~~L~L~~N~---l~~lp~-~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 44 VLNVGESG-LTTLPDCLP---AHITTLVIPDNN---LTSLPA-LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115 (622)
T ss_dssp EEECCSSC-CSCCCSCCC---TTCSEEEECSCC---CSCCCC-CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC
T ss_pred EEEecCCC-cCccChhhC---CCCcEEEecCCC---CCCCCC-cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC
Confidence 34444443 334554333 799999999984 456666 4489999999999999999888999999999999999
Q ss_pred cccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCc
Q 046086 558 LWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSES 637 (966)
Q Consensus 558 l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~ 637 (966)
+|. .+++|+.|++++|++.. +|. .+++|++|+|++|.+. .+|. .+++|+.|++++|.+ ..+| ..+++
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l-~~l~--~~~~~ 182 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQL-TSLP--MLPSG 182 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-SCCC--CCCTT
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCC-CCCc--ccCCC
Confidence 987 67899999999998554 554 3589999999998655 4454 357899999998864 4577 35688
Q ss_pred ccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCC
Q 046086 638 LFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSN 717 (966)
Q Consensus 638 L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 717 (966)
|+.|++++|... .+|... .+|+.|++++|.++.+|.. +++|+.|+|++|.+.+ +| ..+++|+.|++++|.
T Consensus 183 L~~L~Ls~N~l~-~l~~~~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~- 252 (622)
T 3g06_A 183 LQELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR- 252 (622)
T ss_dssp CCEEECCSSCCS-CCCCCC-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-
T ss_pred CcEEECCCCCCC-CCCCcc-chhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC-
Confidence 999999999754 466543 4699999999999998864 5889999999997654 66 457899999999975
Q ss_pred CccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCc
Q 046086 718 LKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNL 778 (966)
Q Consensus 718 l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L 778 (966)
+..+|. .+++|+.|+|++|+|+.+|..+.++++|+.|+|++|++.+..|..+.++
T Consensus 253 L~~lp~------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 253 LTSLPM------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CSCCCC------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCCc------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 456776 2348999999999999999999999999999999999888777644433
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.7e-22 Score=240.34 Aligned_cols=268 Identities=18% Similarity=0.146 Sum_probs=213.3
Q ss_pred CCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCcccccccccccccceecccCCCC
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQ 578 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~ 578 (966)
.+++.|++++| .+..+|....++|++|++++|.++.+|..+++|++|+|++|+++.+|. .+++|++|+|++|.+
T Consensus 40 ~~l~~L~ls~n---~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 40 NGNAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp HCCCEEECCSS---CCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCC---CcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 45899999998 456788877799999999999999999888999999999999999987 789999999999985
Q ss_pred CCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccC
Q 046086 579 LSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSS 658 (966)
Q Consensus 579 ~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~ 658 (966)
.. +|. .+++|+.|++++|.+. .+|.. +++|++|+|++|.+ ..+|. .+++|+.|++++|... .+| ....
T Consensus 114 ~~-l~~--~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l-~~l~~--~~~~L~~L~L~~N~l~-~l~-~~~~ 181 (622)
T 3g06_A 114 TH-LPA--LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQL-ASLPA--LPSELCKLWAYNNQLT-SLP-MLPS 181 (622)
T ss_dssp CC-CCC--CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SCCCC--CCTTCCEEECCSSCCS-CCC-CCCT
T ss_pred CC-CCC--CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcC-CCcCC--ccCCCCEEECCCCCCC-CCc-ccCC
Confidence 54 555 6789999999998754 46654 58999999999864 45665 3578999999998754 466 3345
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEE
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLH 738 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~ 738 (966)
+|+.|++++|.++.+|.. +++|+.|++++|.+. .+|.. +++|+.|++++|.. ..+|. .+++|+.|+
T Consensus 182 ~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L-~~lp~------~l~~L~~L~ 247 (622)
T 3g06_A 182 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRL-TSLPV------LPSELKELM 247 (622)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCC-SCCCC------CCTTCCEEE
T ss_pred CCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCcc-CcCCC------CCCcCcEEE
Confidence 799999999999998864 589999999999665 45543 58899999999754 45662 234899999
Q ss_pred cCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCceeecceeecCCCCCCCC
Q 046086 739 LKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNKWIHRRMYFPGNEIPKW 818 (966)
Q Consensus 739 Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l~~~~~~~~p~~~iP~~ 818 (966)
|++|+|+.+|. .+++|+.|+|++|++. .+|..+ ..+++|..|++++|.+ .+.+|..
T Consensus 248 Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l-----------~~l~~L~~L~L~~N~l---------~~~~~~~ 303 (622)
T 3g06_A 248 VSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESL-----------IHLSSETTVNLEGNPL---------SERTLQA 303 (622)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGG-----------GGSCTTCEEECCSCCC---------CHHHHHH
T ss_pred CCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHH-----------hhccccCEEEecCCCC---------CCcCHHH
Confidence 99999999997 7889999999999866 555432 2344555677888887 4555555
Q ss_pred cccc
Q 046086 819 FRYQ 822 (966)
Q Consensus 819 ~~~~ 822 (966)
|..+
T Consensus 304 l~~L 307 (622)
T 3g06_A 304 LREI 307 (622)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5544
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=9.9e-23 Score=223.40 Aligned_cols=220 Identities=17% Similarity=0.188 Sum_probs=103.8
Q ss_pred EeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCcc--ccccccCCCcccEEeccCC
Q 046086 547 SLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLME--THSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~n 623 (966)
.++.+++.++.+|.++. ++|++|+|++|.+....+. |.++++|++|+|++|.+... .+..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 44555555555554432 3555555555543322222 45555555555555543321 1334444555555555554
Q ss_pred CCCcccCCcc-CCCcccEEEecCCCCCCCCc-cccc--CcccEEeecccccccc-cccccCCCCCCEEeccCCCCcc-cc
Q 046086 624 ESLRSLPDTI-CSESLFELRLWGCLNLKNFP-EISS--SHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLE-YI 697 (966)
Q Consensus 624 ~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p-~~~~--~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~-~~ 697 (966)
.. ..+|..+ .+++|++|++++|......+ ..+. .+|++|++++|.++.+ |..+..+++|+.|++++|.+.+ .+
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 42 2333333 45555555555554332221 1111 1455555555555532 3334555555555555554443 34
Q ss_pred cccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccccC
Q 046086 698 KSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 698 p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
|..+..+++|++|++++|...+..|..+..+. +|+.|+|++|.++.++. .+..+++|++|+|++|++.+..|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC---CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 45555555555555555444333343333322 55555555555554443 34555555555555555544443
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=227.95 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=219.4
Q ss_pred CCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCcccc-cccccccccceec
Q 046086 498 MPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEID 572 (966)
Q Consensus 498 l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~ 572 (966)
++.....+.+++ .+..+|.....+|++|++++|.++.+| ..+++|++|+|++|+++.++ ..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~---~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSG---SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCST---TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCC---CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445666666 557788888899999999999999988 57889999999999999885 4599999999999
Q ss_pred ccCCCCCCCCCC-CCCCccCcEEeccCccCCcccc-ccccCCCcccEEeccCCCCCcccCC-cc-CCCcccEEEecCCCC
Q 046086 573 LHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETH-SSIQYLNKLEVLDLRLCESLRSLPD-TI-CSESLFELRLWGCLN 648 (966)
Q Consensus 573 Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~l~~lp~-~~-~l~~L~~L~L~~~~~ 648 (966)
|++|++....+. +.++++|++|++++|.+....+ ..+..+++|++|++++|..++.++. .+ .+++|++|++++|..
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999987654444 8999999999999997664333 4789999999999999976666654 44 889999999999987
Q ss_pred CCCCcccccC--cccEEeeccccccccccc-ccCCCCCCEEeccCCCCcccccccc---cCCCCCcEEEccCCCCCc---
Q 046086 649 LKNFPEISSS--HIHFLDLYECGIEDMPLS-IECLSKLNSLDIHNCTRLEYIKSSI---FKLKSLKHIEISSCSNLK--- 719 (966)
Q Consensus 649 l~~~p~~~~~--~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~~l---~~l~~L~~L~Ls~~~~l~--- 719 (966)
....|..+.. +|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+ ...+.++.++++++...+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 7766766554 899999999999988875 4568999999999998876554433 346789999999976554
Q ss_pred -cccccccCCCCCCCccEEEcCCCCccccchHh-hcCCCCCEEeecCCCCccccC
Q 046086 720 -RFPEISSSCNREGSTEVLHLKGNNLERIPESI-RHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 720 -~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~n~~l~~lp 772 (966)
.+|..+..+. +|+.|+|++|+++.+|..+ .++++|++|+|++|++.+..|
T Consensus 267 ~~l~~~l~~l~---~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQIS---GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCT---TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhccc---CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 4566666554 9999999999999999875 899999999999999776544
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.6e-22 Score=217.58 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=128.1
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCcc-C
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCS-S 601 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~-~ 601 (966)
+.++++++.++.+| ..+.+|++|+|++|+++.++. .+.++++|++|+|++|.+....| .+.++++|++|++++|. .
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 45667777777777 456678888888888877764 47777888888888877655545 37777778888887776 3
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccc-cccC
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPL-SIEC 679 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~ 679 (966)
....+..+..+++|++|++++|...+..|..+ .+++|++|++++|. ++.+|. .++.
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~ 151 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA----------------------LQALPDDTFRD 151 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc----------------------ccccCHhHhcc
Confidence 33336667777777777777776554444444 45556666655554 333332 2444
Q ss_pred CCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCC
Q 046086 680 LSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLK 758 (966)
Q Consensus 680 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~ 758 (966)
+++|+.|+|++|.+.+..+..+..+++|++|++++|...+..|..+..+. +|+.|+|++|.++.+|. .+..+++|+
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc---cccEeeCCCCcCCcCCHHHcccCcccC
Confidence 55555555555544333333344555555555555444333344333322 55555555555554443 345555555
Q ss_pred EEeecCCCCc
Q 046086 759 SLDISYCEWL 768 (966)
Q Consensus 759 ~L~L~~n~~l 768 (966)
.|+|++|++.
T Consensus 229 ~L~l~~N~~~ 238 (285)
T 1ozn_A 229 YLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCEE
T ss_pred EEeccCCCcc
Confidence 5555555543
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.8e-21 Score=223.22 Aligned_cols=238 Identities=17% Similarity=0.166 Sum_probs=201.1
Q ss_pred CceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCcccc-cccccccccceecccC
Q 046086 501 LRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHG 575 (966)
Q Consensus 501 L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~ 575 (966)
.+.++..++ .+..+|.....+++.|++++|.+..++ ..+++|++|+|++|+++.++ ..+.++++|++|+|++
T Consensus 45 ~~~v~c~~~---~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRK---NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSC---CCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCC---CcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555544 557788888899999999999999887 67889999999999999886 4589999999999999
Q ss_pred CCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCCCC
Q 046086 576 SKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLKNF 652 (966)
Q Consensus 576 n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~ 652 (966)
|++....+. |..+++|++|+|++|.+....+..+..+++|++|+|++|+.++.+|... ++++|++|+|++|... .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 987655553 8999999999999998777667789999999999999988888888754 8999999999999754 56
Q ss_pred cccccC-cccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCC
Q 046086 653 PEISSS-HIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNR 730 (966)
Q Consensus 653 p~~~~~-~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~ 730 (966)
|..... +|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|......+..+..+
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-- 278 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL-- 278 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC--
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc--
Confidence 654332 899999999999977 6689999999999999999998888899999999999999987655444444544
Q ss_pred CCCccEEEcCCCCcc
Q 046086 731 EGSTEVLHLKGNNLE 745 (966)
Q Consensus 731 ~~~L~~L~Ls~n~l~ 745 (966)
++|+.|+|++|.+.
T Consensus 279 -~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 -HHLERIHLHHNPWN 292 (440)
T ss_dssp -TTCCEEECCSSCEE
T ss_pred -cCCCEEEcCCCCcc
Confidence 49999999999876
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2.7e-21 Score=224.10 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=199.8
Q ss_pred CceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCcccc-cccccccccceecccC
Q 046086 501 LRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHG 575 (966)
Q Consensus 501 L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~ 575 (966)
.+.++..+. .+..+|.....++++|++++|.+..++ ..+++|++|+|++|+++.++ ..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~---~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRR---GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSS---CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCC---CcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345555544 456778777789999999999998886 67889999999999999886 5689999999999999
Q ss_pred CCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCCCC
Q 046086 576 SKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLKNF 652 (966)
Q Consensus 576 n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~ 652 (966)
|++....+. |.++++|++|+|++|.+....+..+..+++|+.|++++|+.++.+|... ++++|++|+|++|... .+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence 987655554 8899999999999998776666789999999999999988899888754 8899999999999755 45
Q ss_pred ccccc-CcccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCC
Q 046086 653 PEISS-SHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNR 730 (966)
Q Consensus 653 p~~~~-~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~ 730 (966)
|.... .+|+.|+|++|.++.+ |..+.++++|+.|+|++|.+.+..|..+.++++|+.|+|++|......+..+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-- 289 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL-- 289 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC--
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc--
Confidence 54433 3899999999999977 6689999999999999999998889999999999999999986654444444444
Q ss_pred CCCccEEEcCCCCcc
Q 046086 731 EGSTEVLHLKGNNLE 745 (966)
Q Consensus 731 ~~~L~~L~Ls~n~l~ 745 (966)
++|+.|+|++|.+.
T Consensus 290 -~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 -RYLVELHLHHNPWN 303 (452)
T ss_dssp -TTCCEEECCSSCEE
T ss_pred -cCCCEEEccCCCcC
Confidence 49999999999876
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=5.1e-21 Score=207.44 Aligned_cols=201 Identities=21% Similarity=0.226 Sum_probs=157.0
Q ss_pred ceEeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 545 LVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 545 L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
-++++.+++.++.+|.++ .++|++|+|++|.+....+. |..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888999999888765 46899999999987665553 888889999999988777766788888888888888888
Q ss_pred CCCccc-CCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCccccccc
Q 046086 624 ESLRSL-PDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSS 700 (966)
Q Consensus 624 ~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~ 700 (966)
..++.+ |..+ .+++ |++|++++|.++.+ |..+..+++|+.|++++|.+.+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGR----------------------LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTT----------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccccCHHHhcCCcC----------------------CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 755555 3333 4444 55555555566655 456889999999999999888777777
Q ss_pred ccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcccc-chHhhcCCCCCEEeecCCCCccccC
Q 046086 701 IFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERI-PESIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 701 l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
+..+++|++|++++|......+..+..+ ++|+.|+|++|.++.+ |..+.++++|+.|+|++|++.+..+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGL---HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred hccCCCccEEECCCCcccccCHHHhcCc---cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 9999999999999976544333345544 4999999999999966 7789999999999999998765443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.1e-22 Score=223.67 Aligned_cols=237 Identities=19% Similarity=0.169 Sum_probs=174.4
Q ss_pred ceeEEEecCCCCcccc-cccccceEeecCCCCCcc--cccccc-------cccccceecccCCCCCCCCCC-C--CCCcc
Q 046086 524 DVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQ--LWDDVQ-------NLVNIKEIDLHGSKQLSKLPD-L--SQARN 590 (966)
Q Consensus 524 ~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~--l~~~~~-------~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~ 590 (966)
+|+.|++++|.+ .+| .....|+.|+|++|.++. +|..+. ++++|++|+|++|.+.+.+|. + ..+++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 455555566666 666 233447888888888753 555554 688888888888888777774 4 78888
Q ss_pred CcEEeccCccCCccccccccCC-----CcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCC--ccc----ccC
Q 046086 591 LERLKLDGCSSLMETHSSIQYL-----NKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNF--PEI----SSS 658 (966)
Q Consensus 591 L~~L~L~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~--p~~----~~~ 658 (966)
|++|+|++|.+.+. |..++.+ ++|++|+|++|.+.+..|..+ .+++|++|++++|...+.. |.. ...
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 88888888876665 7777766 888888888887665555555 7888888888888765431 211 123
Q ss_pred cccEEeeccccccccc---c-cccCCCCCCEEeccCCCCccccc-ccccCCCCCcEEEccCCCCCccccccccCCCCCCC
Q 046086 659 HIHFLDLYECGIEDMP---L-SIECLSKLNSLDIHNCTRLEYIK-SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGS 733 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp---~-~~~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~ 733 (966)
+|++|++++|.++.+| . .+..+++|+.|+|++|.+.+..| ..+..+++|++|++++|... .+|..+. ++
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-----~~ 275 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-----AK 275 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-----SE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-----CC
Confidence 7888888888888443 2 24678899999999998877665 44566889999999987654 7776554 38
Q ss_pred ccEEEcCCCCccccchHhhcCCCCCEEeecCCCCcc
Q 046086 734 TEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 734 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 769 (966)
|+.|+|++|+|+.+|. +..+++|++|+|++|++.+
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999998886 8889999999999998654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=8e-22 Score=217.18 Aligned_cols=237 Identities=17% Similarity=0.137 Sum_probs=167.4
Q ss_pred eeEEEecCCCCcccc----cccccceEeecCCCCCcccc-cccccccccceecccCCCCCCCCCCCCCCccCcEEeccCc
Q 046086 525 VRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGC 599 (966)
Q Consensus 525 L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~ 599 (966)
++.++++.+.+...+ ..+++|++|+|++|+++.++ ..+.++++|++|+|++|.+....+ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 444455555554444 44568888888888888775 468888888888888887655444 788888888888887
Q ss_pred cCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCccccc--CcccEEeeccccccccc-cc
Q 046086 600 SSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISS--SHIHFLDLYECGIEDMP-LS 676 (966)
Q Consensus 600 ~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp-~~ 676 (966)
.+.+ + ...++|++|++++|.+.+..+. .+++|++|++++|......|..+. .+|++|++++|.++.++ ..
T Consensus 91 ~l~~-l----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 YVQE-L----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEE-E----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccc-c----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 6443 2 2347888888888875544333 357788888888876665454443 37888888888888653 34
Q ss_pred c-cCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCC
Q 046086 677 I-ECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLS 755 (966)
Q Consensus 677 ~-~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~ 755 (966)
+ ..+++|+.|+|++|.+.+. |. ...+++|++|++++|... .+|..+..+. +|+.|+|++|.++.+|..+..++
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~---~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAA---GVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGT---TCSEEECTTSCCCEECTTCCCCT
T ss_pred HhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccC---cccEEECcCCcccchhhHhhcCC
Confidence 4 4688888888888876544 32 335888888888886544 4555555443 88888888888888888888888
Q ss_pred CCCEEeecCCCCc-cccCCCC
Q 046086 756 KLKSLDISYCEWL-HTLPELP 775 (966)
Q Consensus 756 ~L~~L~L~~n~~l-~~lp~~~ 775 (966)
+|+.|+|++|++. +.+|..+
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHH
Confidence 8888888888877 5555543
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=6.4e-23 Score=238.74 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=202.6
Q ss_pred hhcCCCCCceEEEecCCCccc--cccCCCCC--CceeEEEecCCCCcccc-----cccc----cceEeecCCCCCc----
Q 046086 494 TFSKMPKLRFLKFYGKNKCML--SHFKGVPF--TDVRYFEWHEFPLKTLN-----IRAE----NLVSLKLPGSNVE---- 556 (966)
Q Consensus 494 ~f~~l~~L~~L~l~~n~~~~l--~~l~~~~~--~~L~~L~l~~~~l~~lp-----~~l~----~L~~L~L~~n~i~---- 556 (966)
.|..+++|+.|++++|..... ..++..+. ++|++|++++|.+.... ..+. +|++|+|++|+++
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 478899999999999854321 12333222 78999999999876532 2333 7999999999998
Q ss_pred -ccccccccccccceecccCCCCCCCCCC------CCCCccCcEEeccCccCCcc----ccccccCCCcccEEeccCCCC
Q 046086 557 -QLWDDVQNLVNIKEIDLHGSKQLSKLPD------LSQARNLERLKLDGCSSLME----THSSIQYLNKLEVLDLRLCES 625 (966)
Q Consensus 557 -~l~~~~~~l~~L~~L~Ls~n~~~~~~p~------l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~n~~ 625 (966)
.++..+..+++|++|+|++|.+....+. ....++|++|++++|.+... ++..+..+++|++|++++|..
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4678899999999999999986433221 23356899999999987664 356677889999999999875
Q ss_pred CcccCCcc------CCCcccEEEecCCCCCCC----Ccccc--cCcccEEeecccccccc------cccccCCCCCCEEe
Q 046086 626 LRSLPDTI------CSESLFELRLWGCLNLKN----FPEIS--SSHIHFLDLYECGIEDM------PLSIECLSKLNSLD 687 (966)
Q Consensus 626 l~~lp~~~------~l~~L~~L~L~~~~~l~~----~p~~~--~~~L~~L~L~~n~i~~l------p~~~~~l~~L~~L~ 687 (966)
....+..+ ..++|++|++++|..... ++... ..+|+.|++++|.++.. +..+..+++|+.|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 43322222 356999999999976543 34332 23799999999998743 23344689999999
Q ss_pred ccCCCCccc----ccccccCCCCCcEEEccCCCCCccccccccCC--CCCCCccEEEcCCCCccc-----cchHhhcCCC
Q 046086 688 IHNCTRLEY----IKSSIFKLKSLKHIEISSCSNLKRFPEISSSC--NREGSTEVLHLKGNNLER-----IPESIRHLSK 756 (966)
Q Consensus 688 L~~n~~~~~----~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~--~~~~~L~~L~Ls~n~l~~-----lp~~i~~l~~ 756 (966)
+++|.+... ++..+..+++|++|++++|......+..+... ...++|+.|+|++|.++. +|..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 999977654 67778889999999999986543222221110 012389999999999883 5778889999
Q ss_pred CCEEeecCCCCccc
Q 046086 757 LKSLDISYCEWLHT 770 (966)
Q Consensus 757 L~~L~L~~n~~l~~ 770 (966)
|++|+|++|++...
T Consensus 343 L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 343 LLELQISNNRLEDA 356 (461)
T ss_dssp CCEEECCSSBCHHH
T ss_pred ccEEEccCCccccc
Confidence 99999999987543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.3e-21 Score=214.86 Aligned_cols=241 Identities=18% Similarity=0.169 Sum_probs=190.6
Q ss_pred ccccceEeecCCCCCcccccccccccccceecccCCCCC-CCCCC-CC-------CCccCcEEeccCccCCccccccc--
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQL-SKLPD-LS-------QARNLERLKLDGCSSLMETHSSI-- 609 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~-~~~p~-l~-------~l~~L~~L~L~~~~~~~~~~~~l-- 609 (966)
...+|+.|++++|.+ .+|..+... |+.|+|++|.+. ..+|. +. ++++|++|+|++|.+.+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 567899999999999 888877665 999999999873 34553 33 68999999999999888888876
Q ss_pred cCCCcccEEeccCCCCCcccCCcc-CC-----CcccEEEecCCCCCCCCcccccC--cccEEeeccccccc---ccccc-
Q 046086 610 QYLNKLEVLDLRLCESLRSLPDTI-CS-----ESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIED---MPLSI- 677 (966)
Q Consensus 610 ~~l~~L~~L~L~~n~~l~~lp~~~-~l-----~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~---lp~~~- 677 (966)
+.+++|++|+|++|.+.+. |..+ .+ ++|++|++++|...+..|..+.. +|++|++++|.+.. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 9999999999999986665 7655 44 89999999999887766665544 89999999999763 35555
Q ss_pred -cCCCCCCEEeccCCCCcc--ccc-ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhc
Q 046086 678 -ECLSKLNSLDIHNCTRLE--YIK-SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRH 753 (966)
Q Consensus 678 -~~l~~L~~L~L~~n~~~~--~~p-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~ 753 (966)
+.+++|+.|+|++|.+.+ .++ ..+..+++|++|++++|...+..|.. .+..+++|+.|+|++|.|+.+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEECCCCccChhhhhcc-
Confidence 899999999999998763 333 34568899999999998776655422 22234599999999999999998776
Q ss_pred CCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 754 LSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 754 l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
++|++|+|++|++.+. |. +. .+++|+.|++++|.+
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~-----------~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PD-----------ELPQVGNLSLKGNPF 308 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TT-----------TSCEEEEEECTTCTT
T ss_pred -CCceEEECCCCCCCCC-hh-Hh-----------hCCCCCEEeccCCCC
Confidence 8999999999987654 43 22 344555678888876
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=220.35 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=156.7
Q ss_pred ccccceEeecCCCCCcccc-cccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 541 RAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
.+++|++|+|++|.++.++ ..+..+++|++|+|++|.+....| ++.+++|++|+|++|.+.+ +| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 3457888888888888765 468888888888888887665544 8888888888888876543 22 237888888
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccC--cccEEeecccccccc-ccccc-CCCCCCEEeccCCCCcc
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIEDM-PLSIE-CLSKLNSLDIHNCTRLE 695 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~l-p~~~~-~l~~L~~L~L~~n~~~~ 695 (966)
+++|.+.+..+. .+++|+.|+|++|...+..|..+.. +|+.|+|++|.++.+ |..+. .+++|+.|+|++|.+.+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 888876554433 3577888888888776665554432 788888888888753 45554 67888888888887655
Q ss_pred cccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCc-cccCCC
Q 046086 696 YIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWL-HTLPEL 774 (966)
Q Consensus 696 ~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l-~~lp~~ 774 (966)
. |. ...+++|+.|+|++|... .+|..+..+. +|+.|+|++|.|+.+|..+..+++|+.|++++|++. +.+|..
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~---~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAA---GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGT---TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred c-cc-cccCCCCCEEECCCCCCC-CCCHhHcCCC---CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 4 22 335788888888886554 3444454443 788888888888888877888888888888888876 445443
Q ss_pred C
Q 046086 775 P 775 (966)
Q Consensus 775 ~ 775 (966)
+
T Consensus 258 ~ 258 (487)
T 3oja_A 258 F 258 (487)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=9.7e-22 Score=216.51 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=157.3
Q ss_pred ceeEEEecCCCCcccc----cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCc
Q 046086 524 DVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGC 599 (966)
Q Consensus 524 ~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~ 599 (966)
+|++|++++|.+..++ ..+++|++|+|++|.++.++. +..+++|++|+|++|.+.. +...++|++|++++|
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~----l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANN 109 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE----EEECTTCCEEECCSS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc----ccCCCCcCEEECCCC
Confidence 4445555555555444 355666777777776665544 6666777777777765332 223366777777776
Q ss_pred cCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCccccc---CcccEEeecccccccccc
Q 046086 600 SSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISS---SHIHFLDLYECGIEDMPL 675 (966)
Q Consensus 600 ~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~---~~L~~L~L~~n~i~~lp~ 675 (966)
.+....+. .+++|+.|++++|.+.+..|..+ .+++|++|++++|......+..+. .+|++|+|++|.++.+|.
T Consensus 110 ~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp CCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred ccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 65544332 25667777777666544444334 566777777777765554444332 368888888888888865
Q ss_pred cccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc--ccchHhhc
Q 046086 676 SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE--RIPESIRH 753 (966)
Q Consensus 676 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~--~lp~~i~~ 753 (966)
. ..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.. ..+|..+..+. +|+.|+|++|.++ .+|.++..
T Consensus 187 ~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~---~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 187 Q-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQ---NLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp C-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC-CEECTTCCCCT---TCCEEECTTCCCBHHHHHHHHHT
T ss_pred c-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc-cchhhHhhcCC---CCCEEEccCCCccCcCHHHHHhc
Confidence 4 358999999999997664 555688999999999999754 46777665544 9999999999998 78889999
Q ss_pred CCCCCEEeecCCCC
Q 046086 754 LSKLKSLDISYCEW 767 (966)
Q Consensus 754 l~~L~~L~L~~n~~ 767 (966)
+++|+.|++++|+.
T Consensus 261 ~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 261 NQRVQTVAKQTVKK 274 (317)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cccceEEECCCchh
Confidence 99999999996654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.2e-21 Score=221.91 Aligned_cols=237 Identities=17% Similarity=0.134 Sum_probs=187.0
Q ss_pred cccccccc----ccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCC
Q 046086 557 QLWDDVQN----LVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPD 631 (966)
Q Consensus 557 ~l~~~~~~----l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~ 631 (966)
.+|..+.. +++|++|+|++|.+....| .|+.+++|++|+|++|.+.+..| ++.+++|++|+|++|.+ ..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CCCCC
Confidence 44555444 4599999999999877666 59999999999999998776655 99999999999999864 44443
Q ss_pred ccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCccccccccc-CCCCCcE
Q 046086 632 TICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIF-KLKSLKH 709 (966)
Q Consensus 632 ~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~ 709 (966)
.++|++|++++|......+. ..++|+.|+|++|.++.+ |..++.+++|+.|+|++|.+.+..|..+. .+++|+.
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred ---CCCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 38999999999987665544 345799999999999977 55789999999999999999998888876 7999999
Q ss_pred EEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCccc
Q 046086 710 IEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLL 789 (966)
Q Consensus 710 L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L 789 (966)
|+|++|...+ +|... .+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+ +|..+. .+
T Consensus 174 L~Ls~N~l~~-~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~-----------~l 236 (487)
T 3oja_A 174 LNLQYNFIYD-VKGQV----VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALR-----------FS 236 (487)
T ss_dssp EECTTSCCCE-EECCC----CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCC-----------CC
T ss_pred EecCCCcccc-ccccc----cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhc-----------cC
Confidence 9999987554 34322 2459999999999999999899999999999999999764 554332 23
Q ss_pred ccccCCCCccCceeecceeecCC-CCCCCCccccCCCc
Q 046086 790 EALSGFSLTHNNKWIHRRMYFPG-NEIPKWFRYQSMGS 826 (966)
Q Consensus 790 ~~L~~l~ls~N~l~~~~~~~~p~-~~iP~~~~~~~~~~ 826 (966)
++|..|++++|.+ . +.+|.|+...+.+.
T Consensus 237 ~~L~~L~l~~N~l---------~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 237 QNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp TTCCEEECTTCCB---------CHHHHHHHHTTCHHHH
T ss_pred CCCCEEEcCCCCC---------cCcchHHHHHhCCCCc
Confidence 4455577788876 2 35566666554433
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.3e-22 Score=236.20 Aligned_cols=320 Identities=15% Similarity=0.154 Sum_probs=229.6
Q ss_pred CCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcc-----cc---cccccceEeecCCCCCccc-ccc-ccccc
Q 046086 499 PKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKT-----LN---IRAENLVSLKLPGSNVEQL-WDD-VQNLV 566 (966)
Q Consensus 499 ~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~-----lp---~~l~~L~~L~L~~n~i~~l-~~~-~~~l~ 566 (966)
++|+.|++++|.... ..+..... ++|++|++++|.+.. ++ ..+++|++|+|++|.+... +.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCc-hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578899999875432 11111111 789999999999873 44 4568999999999998752 222 33355
Q ss_pred ----ccceecccCCCCCC----CCC-CCCCCccCcEEeccCccCCccccccc-----cCCCcccEEeccCCCCCcc----
Q 046086 567 ----NIKEIDLHGSKQLS----KLP-DLSQARNLERLKLDGCSSLMETHSSI-----QYLNKLEVLDLRLCESLRS---- 628 (966)
Q Consensus 567 ----~L~~L~Ls~n~~~~----~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~n~~l~~---- 628 (966)
+|++|+|++|.+.. .++ .+..+++|++|++++|.+....+..+ ...++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999998663 234 47889999999999998654433332 3367899999999976553
Q ss_pred cCCcc-CCCcccEEEecCCCCCCCCcccc-------cCcccEEeeccccccc-----ccccccCCCCCCEEeccCCCCcc
Q 046086 629 LPDTI-CSESLFELRLWGCLNLKNFPEIS-------SSHIHFLDLYECGIED-----MPLSIECLSKLNSLDIHNCTRLE 695 (966)
Q Consensus 629 lp~~~-~l~~L~~L~L~~~~~l~~~p~~~-------~~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~L~~n~~~~ 695 (966)
++..+ .+++|++|++++|......+... ..+|+.|++++|.++. ++..+..+++|+.|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 23333 56899999999997543322211 2279999999999985 57778889999999999997654
Q ss_pred cc-----cccccCCCCCcEEEccCCCCCcc----ccccccCCCCCCCccEEEcCCCCcccc-chHhh-----cCCCCCEE
Q 046086 696 YI-----KSSIFKLKSLKHIEISSCSNLKR----FPEISSSCNREGSTEVLHLKGNNLERI-PESIR-----HLSKLKSL 760 (966)
Q Consensus 696 ~~-----p~~l~~l~~L~~L~Ls~~~~l~~----~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~i~-----~l~~L~~L 760 (966)
.. +..+..+++|++|++++|..... ++..+..++ +|+.|+|++|.++.. +..+. ..++|++|
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~---~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE---SLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT---TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC---CcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 32 22334689999999999865543 566555554 899999999998732 22332 23699999
Q ss_pred eecCCCCccc----cCCC---CCCcceeecccCcc---------------cccccCCCCccCceeecceeecCCC----C
Q 046086 761 DISYCEWLHT----LPEL---PRNLYHLEAHHCTL---------------LEALSGFSLTHNNKWIHRRMYFPGN----E 814 (966)
Q Consensus 761 ~L~~n~~l~~----lp~~---~~~L~~L~~~~c~~---------------L~~L~~l~ls~N~l~~~~~~~~p~~----~ 814 (966)
+|++|.+.+. +|.. .++|+.|+++++.- .++|..|++++|.+ +. .
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i---------~~~~~~~ 389 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV---------SDSSCSS 389 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC---------CHHHHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC---------ChhhHHH
Confidence 9999997654 3332 36899999887631 23777889999988 43 7
Q ss_pred CCCCccccCCCcEEEEE
Q 046086 815 IPKWFRYQSMGSSVTLE 831 (966)
Q Consensus 815 iP~~~~~~~~~~~l~~~ 831 (966)
+|.++...+.+..+++.
T Consensus 390 l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 390 LAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHHHCCCCCEEECC
T ss_pred HHHHHHhCCCccEEECC
Confidence 88888888888888774
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.4e-19 Score=195.12 Aligned_cols=219 Identities=14% Similarity=0.114 Sum_probs=160.4
Q ss_pred EEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCc
Q 046086 527 YFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 527 ~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~ 603 (966)
..+..+..+..+| .-+.+|++|++++|+++.++. .+.++++|++|+|++|.+....+ .+.++++|++|+|++|.+..
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3455666677777 445678888888888887765 57788888888888887655444 37778888888888877766
Q ss_pred cccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccccc--ccccccCC
Q 046086 604 ETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIED--MPLSIECL 680 (966)
Q Consensus 604 ~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~--lp~~~~~l 680 (966)
..+..+..+++|++|++++|...+..+..+ .++ +|++|++++|.++. +|..+..+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----------------------TLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT----------------------TCCEEECCSSCCCCCCCCGGGGGC
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCC----------------------CCCEEECcCCccceecCchhhccC
Confidence 666777778888888887776443222222 333 46666666666664 67788999
Q ss_pred CCCCEEeccCCCCcccccccccCCCCCc----EEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchH-hhcCC
Q 046086 681 SKLNSLDIHNCTRLEYIKSSIFKLKSLK----HIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPES-IRHLS 755 (966)
Q Consensus 681 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~----~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~-i~~l~ 755 (966)
++|+.|+|++|++.+..+..+..+++|+ .|++++|... .+|....... +|+.|+|++|.++.+|.. +..++
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI---RLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSC---CEEEEECCSSCCSCCCTTTTTTCC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCC---cccEEECCCCceeecCHhHhcccc
Confidence 9999999999988777777777666666 8999997654 4443333322 899999999999988865 58899
Q ss_pred CCCEEeecCCCCcccc
Q 046086 756 KLKSLDISYCEWLHTL 771 (966)
Q Consensus 756 ~L~~L~L~~n~~l~~l 771 (966)
+|+.|+|++|++....
T Consensus 225 ~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCEEECCSSCBCCCT
T ss_pred cccEEEccCCcccccC
Confidence 9999999999976543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=5.7e-20 Score=197.60 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=122.9
Q ss_pred ccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
.+.+|+.|++++|.++.++ ++..+++|++|++++|.+.. ++.+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444555555555544432 34445555555555554322 334444455555555554444333333444455555555
Q ss_pred cCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccc-ccCCCCCCEEeccCCCCccccc
Q 046086 621 RLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS-IECLSKLNSLDIHNCTRLEYIK 698 (966)
Q Consensus 621 ~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~~p 698 (966)
++|.+.+..|..+ .++ +|++|++++|.++.+|.. ++.+++|+.|++++|.+.+..+
T Consensus 117 ~~n~l~~~~~~~~~~l~----------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLT----------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCT----------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHHHhccCC----------------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 4444322222211 223 466666666666666543 5778888888888887776666
Q ss_pred ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCc
Q 046086 699 SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNL 778 (966)
Q Consensus 699 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L 778 (966)
..+..+++|++|++++|...+..|..+..+. +|+.|+|++|.+. +.+++|+.|+++.|.+.+.+|..++++
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT---SLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT---TCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCc---CCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 6677888888888888766655444444443 8888888888765 335678888899999999998877666
Q ss_pred ce
Q 046086 779 YH 780 (966)
Q Consensus 779 ~~ 780 (966)
..
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=7e-19 Score=189.57 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=141.0
Q ss_pred ccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCC
Q 046086 514 LSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQ 587 (966)
Q Consensus 514 l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~ 587 (966)
+..+|.....+|++|++++|.+..++ ..+++|++|+|++|+++.++. .+.++++|++|+|++|.+....+ .+.+
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 35566666677888888888888776 467889999999999988875 58889999999999998776665 4888
Q ss_pred CccCcEEeccCccCCccccccccCCCcccEEeccCCCCCc-ccCCcc-CCCcccEEEecCCCCCCCCcccccC--ccc--
Q 046086 588 ARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLR-SLPDTI-CSESLFELRLWGCLNLKNFPEISSS--HIH-- 661 (966)
Q Consensus 588 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~-~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~-- 661 (966)
+++|++|++++|......+..++.+++|++|++++|.+.+ .+|..+ .+++|++|++++|......+..+.. +|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999988777666678999999999999887654 356666 6777777777777654433322221 233
Q ss_pred --EEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCC
Q 046086 662 --FLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 662 --~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
.|++++|.++.+|.......+|+.|+|++|.+.+..+..+..+++|+.|++++|+
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 5555666655555544444455555555555443333334555555555555543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=3e-19 Score=191.91 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=155.5
Q ss_pred ccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
.+.++..+++..+.+..+ .....+++|+.|++++|. ...++.+..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus 17 ~~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred hHHHHHHHHhcCcccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 345566667777766655 345678888888888886 4456667788888888888876544 3 36777778888888
Q ss_pred cCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccc-cccCCCCCCEEeccCCCCccccc
Q 046086 621 RLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIK 698 (966)
Q Consensus 621 ~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p 698 (966)
++|.+.+..|..+ .+++ |++|++++|.++.+|. .++.+++|++|++++|.+.+..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~----------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTN----------------------LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp TTSCCCCCCTTTTTTCTT----------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCccChhHhcCCcC----------------------CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 7776443333222 3333 5666666666676655 47899999999999998887777
Q ss_pred ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccccCCCCCC
Q 046086 699 SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTLPELPRN 777 (966)
Q Consensus 699 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~~~~~ 777 (966)
..+..+++|+.|++++|...+..+..+..+. +|+.|+|++|.++.+|. .+..+++|++|+|++|++.+..| +
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~ 223 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLT---QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----G 223 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT----T
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCc---cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc----H
Confidence 7789999999999999876654444445444 99999999999998775 47899999999999999876654 4
Q ss_pred cceeecccC
Q 046086 778 LYHLEAHHC 786 (966)
Q Consensus 778 L~~L~~~~c 786 (966)
++.|++..+
T Consensus 224 l~~l~~~~n 232 (272)
T 3rfs_A 224 IRYLSEWIN 232 (272)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566655443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.2e-18 Score=186.75 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=106.3
Q ss_pred cCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccC--cccEEeecc
Q 046086 590 NLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYE 667 (966)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~ 667 (966)
+|+.|+|++|.+....+..+..+++|++|+|++|.+ ..+|....+++|++|++++|... .+|..+.. +|+.|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 444444444444444444455555555555554432 22332234444444444444322 33332221 567777777
Q ss_pred ccccccc-ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccccc-ccCCCCCCCccEEEcCCCCcc
Q 046086 668 CGIEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEI-SSSCNREGSTEVLHLKGNNLE 745 (966)
Q Consensus 668 n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~-~~~~~~~~~L~~L~Ls~n~l~ 745 (966)
|.++.+| ..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.. ..+|.. +.. +++|+.|+|++|.|+
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~---l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNG---LENLDTLLLQENSLY 185 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-SCCCTTTTTT---CTTCCEEECCSSCCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC-CccCHHHhcC---cCCCCEEECCCCcCC
Confidence 7777765 4577888888888888877766666677888888888888654 445543 233 348888888888888
Q ss_pred ccchHhhcCCCCCEEeecCCCCc
Q 046086 746 RIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 746 ~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
.+|..+..+++|+.|+|++|++.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 88888888888888888888753
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.8e-19 Score=196.51 Aligned_cols=231 Identities=17% Similarity=0.235 Sum_probs=151.1
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCCC--CCCCccCcEE-eccCcc
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD--LSQARNLERL-KLDGCS 600 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L-~L~~~~ 600 (966)
+.++.+++.++++| .-+.++++|+|++|+|+.+|.+ |.++++|++|+|++|++...+|. |.++++|.++ .+.+|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 45677788888888 4467899999999999999875 89999999999999998777773 7888888764 455565
Q ss_pred CCccccccccCCCcccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCCCCccccc----CcccEEeeccccccccc
Q 046086 601 SLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLKNFPEISS----SHIHFLDLYECGIEDMP 674 (966)
Q Consensus 601 ~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~----~~L~~L~L~~n~i~~lp 674 (966)
+....|..+..+++|++|++++|.+ ..+|... ...++..|++.++..+..+|.... ..++.|+|++|.++.+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 5555577889999999999998864 4455433 555677777777665555554321 14666666666666666
Q ss_pred ccccCCCCCCEEeccCCCCcccccc-cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCC-CccccchHhh
Q 046086 675 LSIECLSKLNSLDIHNCTRLEYIKS-SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGN-NLERIPESIR 752 (966)
Q Consensus 675 ~~~~~l~~L~~L~L~~n~~~~~~p~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n-~l~~lp~~i~ 752 (966)
......++|+.|++++|...+.+|. .|..+++|+.|++++|. +..+|... +.+|+.|.+.++ +++.+| .+.
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~-----~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYG-----LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSS-----CTTCCEEECTTCTTCCCCC-CTT
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhh-----hccchHhhhccCCCcCcCC-Cch
Confidence 6555556666666665444555543 34555666666665542 33444321 114455544333 444555 345
Q ss_pred cCCCCCEEeecC
Q 046086 753 HLSKLKSLDISY 764 (966)
Q Consensus 753 ~l~~L~~L~L~~ 764 (966)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 555555555544
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1e-18 Score=191.19 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=124.4
Q ss_pred ccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEE
Q 046086 563 QNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELR 642 (966)
Q Consensus 563 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~ 642 (966)
..+++|++|++++|.+ ..+|.+..+++|++|++++|.+.. ++. +..+++|++|+|++|. +..+|....+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence 3455555555555543 234445555555555555554333 222 5555555555555554 23334323555566666
Q ss_pred ecCCCCCCCCccc-ccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccc
Q 046086 643 LWGCLNLKNFPEI-SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRF 721 (966)
Q Consensus 643 L~~~~~l~~~p~~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~ 721 (966)
+++|.... ++.. ...+|+.|++++|.++.+|. +..+++|+.|++++|.+... +. +..+++|+.|++++|... .+
T Consensus 114 l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~ 188 (308)
T 1h6u_A 114 LTSTQITD-VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS-DI 188 (308)
T ss_dssp CTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CC
T ss_pred CCCCCCCC-chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC-cC
Confidence 66555433 2221 12267777888888887766 88889999999999976654 33 888999999999987654 34
Q ss_pred cccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCcc
Q 046086 722 PEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 722 p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 769 (966)
+. +.. +++|+.|+|++|.++.++ .+..+++|+.|+|++|++.+
T Consensus 189 ~~-l~~---l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP-LAS---LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GGG---CTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred hh-hcC---CCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 43 333 348999999999999888 48899999999999998643
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.4e-18 Score=183.50 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=121.2
Q ss_pred ceeEEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCcc
Q 046086 524 DVRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCS 600 (966)
Q Consensus 524 ~L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~ 600 (966)
.++.++++++.++.+| ..+.+|++|+|++|+++.++. .+.++++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 3455666666666666 344567777777777776654 466677777777777765433333 4666677777777666
Q ss_pred CCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccc-cc
Q 046086 601 SLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS-IE 678 (966)
Q Consensus 601 ~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~ 678 (966)
+....+..+..+++|++|++++|.+.+..|..+ .++ +|++|+|++|.++.+|.. +.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----------------------KLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT----------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc----------------------CCCEEECCCCcCCccCHhHcc
Confidence 554444555666666666666665433322222 333 455555556666666543 66
Q ss_pred CCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccc-cccCCCCCCCccEEEcCCCCcc
Q 046086 679 CLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLE 745 (966)
Q Consensus 679 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~ 745 (966)
.+++|+.|+|++|.+....+..+..+++|++|++++|... .+|. .+..+ ++|+.|+|++|.+.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l---~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL---EKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC---TTCCEEECCSSCBC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccc---cCCCEEEecCCCee
Confidence 7777777777777766655556777777888888776544 3433 33333 37788888888765
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.2e-19 Score=201.66 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=162.6
Q ss_pred cceEeecCCCCCcccccccccc--cccceecccCCCCCCCCCCCCCCccCcEEeccCccCCcc-ccccccCCCcccEEec
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNL--VNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLME-THSSIQYLNKLEVLDL 620 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L 620 (966)
.++.|+++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|+|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3556666666555 3445555 667777777776666555666677777777777765544 5666677777777777
Q ss_pred cCCCCCcccCCcc-CCCcccEEEecCCCCCC--CCcccc--cCcccEEeeccc-cccc--ccccccCCC-CCCEEeccCC
Q 046086 621 RLCESLRSLPDTI-CSESLFELRLWGCLNLK--NFPEIS--SSHIHFLDLYEC-GIED--MPLSIECLS-KLNSLDIHNC 691 (966)
Q Consensus 621 ~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~--~~p~~~--~~~L~~L~L~~n-~i~~--lp~~~~~l~-~L~~L~L~~n 691 (966)
++|...+..|..+ .+++|++|++++|..+. .++... ..+|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 7776554555444 56677777777774333 133322 226777777777 7763 667778888 8888888888
Q ss_pred C--Cc-ccccccccCCCCCcEEEccCCC-CCccccccccCCCCCCCccEEEcCCCC-cc-ccchHhhcCCCCCEEeecCC
Q 046086 692 T--RL-EYIKSSIFKLKSLKHIEISSCS-NLKRFPEISSSCNREGSTEVLHLKGNN-LE-RIPESIRHLSKLKSLDISYC 765 (966)
Q Consensus 692 ~--~~-~~~p~~l~~l~~L~~L~Ls~~~-~l~~~p~~~~~~~~~~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~n 765 (966)
. +. +.+|..+..+++|++|++++|. .....+..+..+ ++|+.|+|++|. +. .....+.++++|+.|+|++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL---NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC---TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC---CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3 33 5567777788888888888887 334555555554 388888888884 32 11125778889999999888
Q ss_pred CCccccCCCCCCcceeecccCccc-ccccCCCCccCceeecceeecCCCCCCCCcccc
Q 046086 766 EWLHTLPELPRNLYHLEAHHCTLL-EALSGFSLTHNNKWIHRRMYFPGNEIPKWFRYQ 822 (966)
Q Consensus 766 ~~l~~lp~~~~~L~~L~~~~c~~L-~~L~~l~ls~N~l~~~~~~~~p~~~iP~~~~~~ 822 (966)
++.. ....+ +.++.|++++|.+ .+..|.++.+.
T Consensus 283 -----i~~~----------~~~~l~~~l~~L~l~~n~l---------~~~~~~~~~~~ 316 (336)
T 2ast_B 283 -----VPDG----------TLQLLKEALPHLQINCSHF---------TTIARPTIGNK 316 (336)
T ss_dssp -----SCTT----------CHHHHHHHSTTSEESCCCS---------CCTTCSSCSST
T ss_pred -----cCHH----------HHHHHHhhCcceEEecccC---------ccccCCccccc
Confidence 2221 11112 2355677888888 67778877753
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.9e-18 Score=181.07 Aligned_cols=201 Identities=21% Similarity=0.222 Sum_probs=152.1
Q ss_pred ccceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEecc
Q 046086 543 ENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLR 621 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 621 (966)
.+++.+++++++++.+|..+. ++|++|+|++|++....+ .|.++++|++|+|++|.+....+..+..+++|++|+|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 457788899998888887664 678888888888665544 47888888888888877665444556778888888888
Q ss_pred CCCCCcccCCc-c-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccc-cccCCCCCCEEeccCCCCccccc
Q 046086 622 LCESLRSLPDT-I-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIK 698 (966)
Q Consensus 622 ~n~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p 698 (966)
+|.+. .+|.. + .++ +|++|++++|.++.+|. .+..+++|++|+|++|.+.+..+
T Consensus 94 ~n~l~-~~~~~~~~~l~----------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLV----------------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SSCCC-CCCTTTTTTCS----------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCC-cCCHhHccccc----------------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 77643 33332 1 333 36666666666776654 47899999999999998877666
Q ss_pred ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCcccc
Q 046086 699 SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHTL 771 (966)
Q Consensus 699 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~l 771 (966)
..+..+++|++|++++|......+..+..+ ++|+.|+|++|.++.+|. .+..+++|+.|+|++|++....
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKL---TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccC---CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 678999999999999976555444445544 499999999999998886 4788999999999999875443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=192.54 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=124.8
Q ss_pred ccccceecccCCCCCCCCCC-C--CCCccCcEEeccCccCCcccc----ccccCCCcccEEeccCCCCCcccCCcc-CCC
Q 046086 565 LVNIKEIDLHGSKQLSKLPD-L--SQARNLERLKLDGCSSLMETH----SSIQYLNKLEVLDLRLCESLRSLPDTI-CSE 636 (966)
Q Consensus 565 l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~ 636 (966)
+++|++|++++|.+.+..|. + ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..|..+ .++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555555544442 3 555555555555555444322 233455566666666555443333333 555
Q ss_pred cccEEEecCCCCCCC--Ccc----cccCcccEEeeccccccccccc----ccCCCCCCEEeccCCCCcccccccccCC--
Q 046086 637 SLFELRLWGCLNLKN--FPE----ISSSHIHFLDLYECGIEDMPLS----IECLSKLNSLDIHNCTRLEYIKSSIFKL-- 704 (966)
Q Consensus 637 ~L~~L~L~~~~~l~~--~p~----~~~~~L~~L~L~~n~i~~lp~~----~~~l~~L~~L~L~~n~~~~~~p~~l~~l-- 704 (966)
+|++|+|++|...+. ++. ....+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 566666655553321 110 0112577777777777766542 4678889999999988877777777666
Q ss_pred -CCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCc
Q 046086 705 -KSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 705 -~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
++|++|++++|... .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~-----~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP-----AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC-----SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc-----CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 68899999886554 6776543 388999999998888875 678888999999988865
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.6e-20 Score=210.05 Aligned_cols=231 Identities=14% Similarity=0.139 Sum_probs=168.0
Q ss_pred cccccceEeecCCCCCcc-----cccccccccccceecccCCCCC---CCCC-C-------CCCCccCcEEeccCccCCc
Q 046086 540 IRAENLVSLKLPGSNVEQ-----LWDDVQNLVNIKEIDLHGSKQL---SKLP-D-------LSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~Ls~n~~~---~~~p-~-------l~~l~~L~~L~L~~~~~~~ 603 (966)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. ..+| . +..+++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 456778888888888774 4445778888888888886432 2333 1 3677888899998887766
Q ss_pred ----cccccccCCCcccEEeccCCCCCcccCCcc-----CC---------CcccEEEecCCCCC-CCCccc-----ccCc
Q 046086 604 ----ETHSSIQYLNKLEVLDLRLCESLRSLPDTI-----CS---------ESLFELRLWGCLNL-KNFPEI-----SSSH 659 (966)
Q Consensus 604 ----~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-----~l---------~~L~~L~L~~~~~l-~~~p~~-----~~~~ 659 (966)
.++..+..+++|++|+|++|.+....+..+ .+ ++|++|++++|... ..+|.. ...+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 467778888899999998887543222222 22 78888999888765 334421 1227
Q ss_pred ccEEeecccccc------cccccccCCCCCCEEeccCCCCc----ccccccccCCCCCcEEEccCCCCCcc----ccccc
Q 046086 660 IHFLDLYECGIE------DMPLSIECLSKLNSLDIHNCTRL----EYIKSSIFKLKSLKHIEISSCSNLKR----FPEIS 725 (966)
Q Consensus 660 L~~L~L~~n~i~------~lp~~~~~l~~L~~L~L~~n~~~----~~~p~~l~~l~~L~~L~Ls~~~~l~~----~p~~~ 725 (966)
|++|+|++|.++ -+|..+..+++|+.|+|++|.+. ..+|..+..+++|++|+|++|..... +|..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 899999999887 23447888999999999999875 67788888999999999999876544 44444
Q ss_pred cCCCCCCCccEEEcCCCCccc-----cchHh-hcCCCCCEEeecCCCCcccc
Q 046086 726 SSCNREGSTEVLHLKGNNLER-----IPESI-RHLSKLKSLDISYCEWLHTL 771 (966)
Q Consensus 726 ~~~~~~~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~n~~l~~l 771 (966)
... .+++|+.|+|++|.++. +|..+ .++++|++|+|++|++.+..
T Consensus 269 ~~~-~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 269 SKL-ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HTC-SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhc-cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 221 13389999999999986 88877 66899999999999876544
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=6.8e-18 Score=182.85 Aligned_cols=190 Identities=16% Similarity=0.103 Sum_probs=114.9
Q ss_pred eeEEEecCCCCcccc-cccccceEeecCCCCCcccc-cccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCC
Q 046086 525 VRYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSL 602 (966)
Q Consensus 525 L~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~ 602 (966)
++.++++++.++.+| ..+.+|+.|+|++|.++.++ ..+.++++|++|+|++|.+. .++..+.+++|++|++++|.+.
T Consensus 12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSCCS
T ss_pred ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCEEECCCCcCC
Confidence 333444444444444 23345555555555555443 33555666666666666533 2333355566666666665432
Q ss_pred ccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCccccc--CcccEEeeccccccccccc-cc
Q 046086 603 METHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISS--SHIHFLDLYECGIEDMPLS-IE 678 (966)
Q Consensus 603 ~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp~~-~~ 678 (966)
.+|..+..+++|++|++++|.+.+..|..+ .+++|++|+|++|......+..+. .+|+.|+|++|.++.+|.. +.
T Consensus 91 -~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp -SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred -cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 455555666666666666555433222333 556666666666654433333222 2688888888888888764 57
Q ss_pred CCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCC
Q 046086 679 CLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSN 717 (966)
Q Consensus 679 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 717 (966)
.+++|+.|+|++|.+. .+|..+..+++|+.|+|++|+.
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 7899999999998655 7788888888999999998764
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.1e-19 Score=201.83 Aligned_cols=230 Identities=20% Similarity=0.262 Sum_probs=149.8
Q ss_pred ccceEeecCCCCCcccccccccccccceecccCCCCCCC-CCC-CCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 543 ENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSK-LPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
.+++.|++++|.+...+..+..+++|++|+|++|.+... +|. +..+++|++|+|++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 556666666666666555566666777777776664332 332 556667777777776655556666666777777777
Q ss_pred cCCCCCc--ccCCcc-CCCcccEEEecCC-CCCCC-Ccccc--cC-cccEEeecccc--c--ccccccccCCCCCCEEec
Q 046086 621 RLCESLR--SLPDTI-CSESLFELRLWGC-LNLKN-FPEIS--SS-HIHFLDLYECG--I--EDMPLSIECLSKLNSLDI 688 (966)
Q Consensus 621 ~~n~~l~--~lp~~~-~l~~L~~L~L~~~-~~l~~-~p~~~--~~-~L~~L~L~~n~--i--~~lp~~~~~l~~L~~L~L 688 (966)
++|..++ .+|..+ .+++|++|++++| ..... ++... .+ +|++|++++|. + ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 7663333 244433 5667777777777 33221 22211 22 58888888874 4 367777888999999999
Q ss_pred cCCC-CcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcC-CCCCEEeecCCC
Q 046086 689 HNCT-RLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHL-SKLKSLDISYCE 766 (966)
Q Consensus 689 ~~n~-~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l-~~L~~L~L~~n~ 766 (966)
++|. +....+..+..+++|++|++++|.. ..+..+..+..+++|+.|+|++| ++. ..+..+ .+|..|++++|+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEeccc
Confidence 9998 5567777889999999999999862 22332222223459999999999 431 122222 235556689999
Q ss_pred CccccCCCCCC
Q 046086 767 WLHTLPELPRN 777 (966)
Q Consensus 767 ~l~~lp~~~~~ 777 (966)
+.+..|....+
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 99988887654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=9.8e-18 Score=183.42 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=132.2
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
..+.+|++|++++|.++.++ ++..+++|++|+|++|.+... +.+..+++|++|++++|.+.. + +.+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hhHccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEE
Confidence 34556666666666666654 466666666666666654433 336666666666666665433 3 2566666666666
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccc
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKS 699 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 699 (966)
+++|.. ..+|....+++|++|++++|......+.....+|+.|++++|.++.+|. +..+++|+.|++++|.+.+..+
T Consensus 114 l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 114 LTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp CTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCC-CCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 666653 3344433666677777776654433332222368888888888888877 8899999999999997765443
Q ss_pred cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchH
Q 046086 700 SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPES 750 (966)
Q Consensus 700 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~ 750 (966)
+..+++|++|++++|...+ ++. +.. +++|+.|+|++|.++..|..
T Consensus 191 -l~~l~~L~~L~L~~N~l~~-~~~-l~~---l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISD-VSP-LAN---TSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCB-CGG-GTT---CTTCCEEEEEEEEEECCCEE
T ss_pred -hcCCCCCCEEEccCCccCc-ccc-ccC---CCCCCEEEccCCeeecCCee
Confidence 7889999999999976544 442 443 44999999999999887743
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=5.8e-18 Score=178.12 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=41.9
Q ss_pred EEeeccc-ccccccc-cccCCCCCC-EEeccCCCCcccccccccCCCCCcEEEccCCCCCcccc-ccccCCCCCCCccEE
Q 046086 662 FLDLYEC-GIEDMPL-SIECLSKLN-SLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP-EISSSCNREGSTEVL 737 (966)
Q Consensus 662 ~L~L~~n-~i~~lp~-~~~~l~~L~-~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~~~~~L~~L 737 (966)
.|++++| .++.+|. .+..+++|+ .|++++|.+. .+|......++|+.|++++|..+..+| ..+..+ .++|+.|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l--~~~L~~L 210 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV--YSGPSLL 210 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC--SBCCSEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc--ccCCcEE
Confidence 4444444 4444433 244555555 5555555433 333322222445555555443222332 222222 0244555
Q ss_pred EcCCCCccccchHhhcCCCCCEEeecCC
Q 046086 738 HLKGNNLERIPESIRHLSKLKSLDISYC 765 (966)
Q Consensus 738 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~n 765 (966)
+|++|.++.+|.. .+++|+.|++++|
T Consensus 211 ~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred ECCCCccccCChh--HhccCceeeccCc
Confidence 5555555544433 3444444444444
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.5e-17 Score=175.00 Aligned_cols=207 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred CCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCcc-CCccccccccCCCcccEEeccCCCCCccc
Q 046086 552 GSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCS-SLMETHSSIQYLNKLEVLDLRLCESLRSL 629 (966)
Q Consensus 552 ~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~L~~n~~l~~l 629 (966)
.++++.+|. +. .+|++|++++|++....+ .|.++++|++|++++|. .....+..+..+++|++|++++|+.+..+
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334666665 32 367777777776554444 36666677777777665 33333335666666666666652233344
Q ss_pred CCc-c-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCC---EEeccCC-CCcccccccccC
Q 046086 630 PDT-I-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLN---SLDIHNC-TRLEYIKSSIFK 703 (966)
Q Consensus 630 p~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~---~L~L~~n-~~~~~~p~~l~~ 703 (966)
|.. + +++ +|++|++++|.++.+|. +..+++|+ .|++++| .+.+..+..+.+
T Consensus 97 ~~~~f~~l~----------------------~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 97 DPDALKELP----------------------LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp CTTSEECCT----------------------TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred CHHHhCCCC----------------------CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 322 1 333 46667777777777776 78888888 9999999 666655567999
Q ss_pred CCCCc-EEEccCCCCCccccccccCCCCCCCccEEEcCCC-Cccccch-HhhcC-CCCCEEeecCCCCccccCCCCCCcc
Q 046086 704 LKSLK-HIEISSCSNLKRFPEISSSCNREGSTEVLHLKGN-NLERIPE-SIRHL-SKLKSLDISYCEWLHTLPELPRNLY 779 (966)
Q Consensus 704 l~~L~-~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n-~l~~lp~-~i~~l-~~L~~L~L~~n~~l~~lp~~~~~L~ 779 (966)
+++|+ .|++++|... .+|...... ++|+.|+|++| .++.+|. .+..+ ++|+.|+|++|++.+..+..+++|+
T Consensus 154 l~~L~~~L~l~~n~l~-~i~~~~~~~---~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT-SVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp TBSSEEEEECCSCCCC-EECTTTTTT---CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred hhcceeEEEcCCCCCc-ccCHhhcCC---CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 99999 9999997654 777654432 38999999999 5998875 57889 9999999999998755555678888
Q ss_pred eeecccCcc
Q 046086 780 HLEAHHCTL 788 (966)
Q Consensus 780 ~L~~~~c~~ 788 (966)
.|++.++..
T Consensus 230 ~L~l~~~~~ 238 (239)
T 2xwt_C 230 ELIARNTWT 238 (239)
T ss_dssp EEECTTC--
T ss_pred eeeccCccC
Confidence 888877654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.2e-17 Score=196.15 Aligned_cols=187 Identities=21% Similarity=0.209 Sum_probs=117.9
Q ss_pred CCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccccccccceEeecCCCCCcccccccccccccceecccCCCCC
Q 046086 500 KLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLNIRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQL 579 (966)
Q Consensus 500 ~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~ 579 (966)
+|+.|++++|. +..+|...+++|++|++++|.++.+|..+++|++|+|++|+|+.+|. +.+ +|++|+|++|++.
T Consensus 60 ~L~~L~Ls~n~---L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLN---LSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSC---CSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred CccEEEeCCCC---CCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 78888888773 34566655567777777777777777556677777777777777766 544 7777777777654
Q ss_pred CCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCc
Q 046086 580 SKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSH 659 (966)
Q Consensus 580 ~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~ 659 (966)
. +|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.+. .+|. +. ++|+.|+|++|.+. .+|. +..+
T Consensus 134 ~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~-~~L~~L~Ls~N~L~-~lp~-~~~~ 201 (571)
T 3cvr_A 134 M-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP-ESLEALDVSTNLLE-SLPA-VPVR 201 (571)
T ss_dssp C-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC-TTCCEEECCSSCCS-SCCC-CC--
T ss_pred C-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh-CCCCEEECcCCCCC-chhh-HHHh
Confidence 4 555 56677777777766544 444 4567777777766543 3665 44 66666666666533 4555 3334
Q ss_pred c-------cEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCC
Q 046086 660 I-------HFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKL 704 (966)
Q Consensus 660 L-------~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l 704 (966)
| +.|+|++|.|+.+|..+..+++|+.|+|++|.+.+.+|..+..+
T Consensus 202 L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5 66666666666666666666666666666666666655555443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=6.6e-19 Score=199.65 Aligned_cols=246 Identities=14% Similarity=0.067 Sum_probs=185.5
Q ss_pred cceEeecCCCCCcccccccccccccceecccCCCCCCCCC-----CCCCCccCcEEeccCcc---CCccccccc------
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-----DLSQARNLERLKLDGCS---SLMETHSSI------ 609 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-----~l~~l~~L~~L~L~~~~---~~~~~~~~l------ 609 (966)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|. +.+.+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4555556666667888889999999999999998665422 37789999999999973 333445444
Q ss_pred -cCCCcccEEeccCCCCCc----ccCCcc-CCCcccEEEecCCCCCCCCccccc---------------CcccEEeeccc
Q 046086 610 -QYLNKLEVLDLRLCESLR----SLPDTI-CSESLFELRLWGCLNLKNFPEISS---------------SHIHFLDLYEC 668 (966)
Q Consensus 610 -~~l~~L~~L~L~~n~~l~----~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~---------------~~L~~L~L~~n 668 (966)
..+++|++|+|++|.+.. .+|..+ .+++|++|+|++|......+..+. .+|++|+|++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 789999999999998766 366655 789999999999986432221111 46999999999
Q ss_pred ccc--ccc---ccccCCCCCCEEeccCCCCcc-----cccccccCCCCCcEEEccCCCCC----ccccccccCCCCCCCc
Q 046086 669 GIE--DMP---LSIECLSKLNSLDIHNCTRLE-----YIKSSIFKLKSLKHIEISSCSNL----KRFPEISSSCNREGST 734 (966)
Q Consensus 669 ~i~--~lp---~~~~~l~~L~~L~L~~n~~~~-----~~p~~l~~l~~L~~L~Ls~~~~l----~~~p~~~~~~~~~~~L 734 (966)
.++ .+| ..+..+++|+.|+|++|.+.. ..|..+..+++|+.|+|++|... ..+|..+..++ +|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~---~L 246 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP---NL 246 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT---TC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC---Cc
Confidence 997 455 467789999999999998762 34557889999999999998764 56777666655 89
Q ss_pred cEEEcCCCCccc-----cchHhhc--CCCCCEEeecCCCCcc----ccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 735 EVLHLKGNNLER-----IPESIRH--LSKLKSLDISYCEWLH----TLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 735 ~~L~Ls~n~l~~-----lp~~i~~--l~~L~~L~L~~n~~l~----~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
+.|+|++|.++. +|..+.. +++|++|+|++|++.. .+|..+ ..++++|..|++++|.+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l----------~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI----------DEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH----------HHHCTTCCEEECTTSBS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH----------HhcCCCceEEEccCCcC
Confidence 999999999984 5677744 9999999999999776 355422 01234455567778877
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=181.82 Aligned_cols=200 Identities=17% Similarity=0.085 Sum_probs=159.4
Q ss_pred CCccCcEEeccCccCCccccccc--cCCCcccEEeccCCCCCcccCCc-----cCCCcccEEEecCCCCCCCCcccccC-
Q 046086 587 QARNLERLKLDGCSSLMETHSSI--QYLNKLEVLDLRLCESLRSLPDT-----ICSESLFELRLWGCLNLKNFPEISSS- 658 (966)
Q Consensus 587 ~l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~n~~l~~lp~~-----~~l~~L~~L~L~~~~~l~~~p~~~~~- 658 (966)
.+++|++|++++|.+.+..|..+ ..+++|++|+|++|...+..|.. ..+++|++|+|++|......|..+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35679999999999988888888 99999999999999877655521 16889999999999987766665443
Q ss_pred -cccEEeeccccccc---ccc--cccCCCCCCEEeccCCCCcccccc----cccCCCCCcEEEccCCCCCccccccccCC
Q 046086 659 -HIHFLDLYECGIED---MPL--SIECLSKLNSLDIHNCTRLEYIKS----SIFKLKSLKHIEISSCSNLKRFPEISSSC 728 (966)
Q Consensus 659 -~L~~L~L~~n~i~~---lp~--~~~~l~~L~~L~L~~n~~~~~~p~----~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~ 728 (966)
+|++|+|++|.+.. ++. .++.+++|++|+|++|.+. .++. .+..+++|++|+|++|...+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 89999999999764 433 3578999999999999774 3333 35788999999999988877778888777
Q ss_pred CCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 729 NREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 729 ~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
..+++|+.|+|++|.|+.+|..+. ++|++|+|++|++.+. |. + ..+++|..|++++|.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~-----------~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-P-----------DELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-T-----------TSCCCCSCEECSSTTT
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-h-----------hhCCCccEEECcCCCC
Confidence 655799999999999999998774 8999999999997642 22 1 2234555567777876
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=4.6e-17 Score=191.22 Aligned_cols=192 Identities=17% Similarity=0.195 Sum_probs=117.3
Q ss_pred cceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
+|+.|+|++|+++.+|..+. ++|++|+|++|.+. .+| ..+++|++|+|++|.+.+ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~------------ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA------------ 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT------------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc------------
Confidence 45555555555555554442 45555555555433 334 334445555555443333 333 322
Q ss_pred CCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccC
Q 046086 624 ESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFK 703 (966)
Q Consensus 624 ~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~ 703 (966)
+|++|+|++|...+ +|. ...+|+.|+|++|.++.+|. .+++|+.|+|++|.+.+ +|. +.
T Consensus 121 -------------~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 121 -------------SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp -------------TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred -------------CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh-
Confidence 45555555554332 444 33356777777777777766 46778888888876555 665 44
Q ss_pred CCCCcEEEccCCCCCccccccccC-C-CCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCCCCCc
Q 046086 704 LKSLKHIEISSCSNLKRFPEISSS-C-NREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPELPRNL 778 (966)
Q Consensus 704 l~~L~~L~Ls~~~~l~~~p~~~~~-~-~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L 778 (966)
++|+.|+|++|.. ..+|. +.. + .....|+.|+|++|.|+.+|..+..+++|+.|+|++|++.+.+|..+.++
T Consensus 180 -~~L~~L~Ls~N~L-~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 -ESLEALDVSTNLL-ESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -TTCCEEECCSSCC-SSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CCCCEEECcCCCC-Cchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 7788888887643 46666 332 0 00113399999999999999999999999999999999988887654443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1e-16 Score=178.92 Aligned_cols=231 Identities=18% Similarity=0.138 Sum_probs=176.8
Q ss_pred ceEeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCcccc-ccccCCCcccEEeccC
Q 046086 545 LVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETH-SSIQYLNKLEVLDLRL 622 (966)
Q Consensus 545 L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~ 622 (966)
-++++.++++++++|.++ .+++++|+|++|++....++ |.++++|++|+|++|.+.+.+| ..|.++++|..+.+.+
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 357888999999999887 46899999999986644443 8999999999999999877766 4688999988755544
Q ss_pred CCCCcccC-Ccc-CCCcccEEEecCCCCCCCCcccccC--cccEEeecc-cccccccc-cccCC-CCCCEEeccCCCCcc
Q 046086 623 CESLRSLP-DTI-CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYE-CGIEDMPL-SIECL-SKLNSLDIHNCTRLE 695 (966)
Q Consensus 623 n~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~-n~i~~lp~-~~~~l-~~L~~L~L~~n~~~~ 695 (966)
++.+..+| ..+ .+++|++|++++|......+..... ++..|++.+ +.+..+|. .+..+ ..|+.|+|++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 44456665 444 8899999999999765544433333 677888865 67888875 45555 46899999999765
Q ss_pred cccccccCCCCCcEEEccCCCCCcccccc-ccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccccCCC
Q 046086 696 YIKSSIFKLKSLKHIEISSCSNLKRFPEI-SSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHTLPEL 774 (966)
Q Consensus 696 ~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~-~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~ 774 (966)
.+|......++|+.|++++|+.++.+|.. +.. +++|+.|+|++|+|+.+|.. .+.+|+.|.+.+|..++.+|.+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~---l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG---ASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT---EECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhcc---CcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 56666667789999999998999999864 344 44999999999999999963 4778889998888888888852
Q ss_pred --CCCcceeec
Q 046086 775 --PRNLYHLEA 783 (966)
Q Consensus 775 --~~~L~~L~~ 783 (966)
+++|+.+++
T Consensus 243 ~~l~~L~~l~l 253 (350)
T 4ay9_X 243 EKLVALMEASL 253 (350)
T ss_dssp TTCCSCCEEEC
T ss_pred hhCcChhhCcC
Confidence 345555554
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2e-16 Score=167.62 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=87.9
Q ss_pred cceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccC
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRL 622 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 622 (966)
+.++++++++.++.+|.++. ++|+.|+|++|.+....+ .|.++++|++|+|++|.+.+..+..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44556666666666665544 456666666666554444 256666666666666655555555566666666666666
Q ss_pred CCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccc-ccCCCCCCEEeccCCCCccccccc
Q 046086 623 CESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS-IECLSKLNSLDIHNCTRLEYIKSS 700 (966)
Q Consensus 623 n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~~ 700 (966)
|.+.+..+..+ .+++|++|+|++| .++.+|.. +..+++|+.|+|++|.+.+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGN----------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcccccChhHhcccCCCCEEEcCCC----------------------cCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 55432222222 3334443333333 33333332 344555555555555444333334
Q ss_pred ccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcc
Q 046086 701 IFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLE 745 (966)
Q Consensus 701 l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~ 745 (966)
+..+++|++|+|++|...+..+..+..+ ++|+.|+|++|.++
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRL---GKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTC---TTCCEEECCSCCBC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCC---CCCCEEEeeCCcee
Confidence 5555555555555544333222233322 25555555555554
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.2e-18 Score=207.07 Aligned_cols=304 Identities=15% Similarity=0.089 Sum_probs=196.7
Q ss_pred hcCCCCCceEEEecCCCcccc--ccCCCC--CCceeEEEecCCCCcc-----cc---cccccceEeecCCCCCccccccc
Q 046086 495 FSKMPKLRFLKFYGKNKCMLS--HFKGVP--FTDVRYFEWHEFPLKT-----LN---IRAENLVSLKLPGSNVEQLWDDV 562 (966)
Q Consensus 495 f~~l~~L~~L~l~~n~~~~l~--~l~~~~--~~~L~~L~l~~~~l~~-----lp---~~l~~L~~L~L~~n~i~~l~~~~ 562 (966)
..++++|++|++++|...... .++... .++|+.|++++|.+.. ++ ..+++|++|+|++|.+..+|..+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 347899999999987321100 011111 2789999999988763 33 46789999999999999988889
Q ss_pred ccccccceecccCCCCCCC---C-CCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccC-Ccc-CCC
Q 046086 563 QNLVNIKEIDLHGSKQLSK---L-PDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLP-DTI-CSE 636 (966)
Q Consensus 563 ~~l~~L~~L~Ls~n~~~~~---~-p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp-~~~-~l~ 636 (966)
.++++|++|+++++..... . ..+..+++|+.|+++++ ....+|..+..+++|++|+|++|....... ..+ .++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 9999999999986433211 1 13677788888888874 455677778888899999998887433222 212 678
Q ss_pred cccEEEecCCCCCCCCcccc--cCcccEEeec-----------ccccc--cccccccCCCCCCEEeccCCCCcccccccc
Q 046086 637 SLFELRLWGCLNLKNFPEIS--SSHIHFLDLY-----------ECGIE--DMPLSIECLSKLNSLDIHNCTRLEYIKSSI 701 (966)
Q Consensus 637 ~L~~L~L~~~~~l~~~p~~~--~~~L~~L~L~-----------~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l 701 (966)
+|++|+++++.....++... ..+|++|+++ .|.++ .++.....+++|++|+++.|.+.+..+..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 88888887442222222221 2268888888 35555 234445567888888887777766666555
Q ss_pred cC-CCCCcEEEccC---CCCCcccc------ccccCCCCCCCccEEEcCCCC--cc-ccchHh-hcCCCCCEEeecCCCC
Q 046086 702 FK-LKSLKHIEISS---CSNLKRFP------EISSSCNREGSTEVLHLKGNN--LE-RIPESI-RHLSKLKSLDISYCEW 767 (966)
Q Consensus 702 ~~-l~~L~~L~Ls~---~~~l~~~p------~~~~~~~~~~~L~~L~Ls~n~--l~-~lp~~i-~~l~~L~~L~L~~n~~ 767 (966)
.. +++|++|++++ |+.++..| ..+..+. +|+.|+|+.|. ++ ..+..+ ..+++|++|+|++|++
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~---~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK---KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT---TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC---CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 54 78888888873 34444332 2233343 78888887543 54 333334 4478888888888876
Q ss_pred cc-ccC---CCCCCcceeecccCc-----------ccccccCCCCccCce
Q 046086 768 LH-TLP---ELPRNLYHLEAHHCT-----------LLEALSGFSLTHNNK 802 (966)
Q Consensus 768 l~-~lp---~~~~~L~~L~~~~c~-----------~L~~L~~l~ls~N~l 802 (966)
.+ .++ ...++|+.|++++|. .+++|+.|++++|.+
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 54 222 234567777777764 244566667777765
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.8e-18 Score=207.90 Aligned_cols=321 Identities=14% Similarity=0.093 Sum_probs=190.8
Q ss_pred cCCCCCceEEEecCCCccccccCCCC--C-CceeEEEecCCCC-c--ccc---cccccceEeecCCCCCcc-----cccc
Q 046086 496 SKMPKLRFLKFYGKNKCMLSHFKGVP--F-TDVRYFEWHEFPL-K--TLN---IRAENLVSLKLPGSNVEQ-----LWDD 561 (966)
Q Consensus 496 ~~l~~L~~L~l~~n~~~~l~~l~~~~--~-~~L~~L~l~~~~l-~--~lp---~~l~~L~~L~L~~n~i~~-----l~~~ 561 (966)
.++++|+.|++++|.... ..+.... . .+|++|++++|.. . .++ ..+++|++|+|++|.+.. ++..
T Consensus 109 ~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hhCCCCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 367888888888763211 1111000 1 3488888887751 1 122 356788888888887653 3334
Q ss_pred cccccccceecccCCCCCCC----CCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCC---cccCCcc
Q 046086 562 VQNLVNIKEIDLHGSKQLSK----LPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESL---RSLPDTI 633 (966)
Q Consensus 562 ~~~l~~L~~L~Ls~n~~~~~----~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l---~~lp~~~ 633 (966)
...+++|++|++++|.+... ++. +.++++|+.|++++|...+ ++..+..+++|+.|+++.+... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 56778888888888875422 121 4567888888888876543 6677788888888888754322 1122222
Q ss_pred -CCCcccEEEecCCCCCCCCcccccC--cccEEeecccccc--cccccccCCCCCCEEeccCCCCcccccccccCCCCCc
Q 046086 634 -CSESLFELRLWGCLNLKNFPEISSS--HIHFLDLYECGIE--DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLK 708 (966)
Q Consensus 634 -~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 708 (966)
.+++|+.|+++++. ...+|..... +|++|+|++|.++ .++..+..+++|+.|+++++-....++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 56778888887752 3444544332 6888888887765 2333467778888888874433334444456677788
Q ss_pred EEEccC----------CCCCcc--ccccccCCCCCCCccEEEcCCCCcc-ccchHhhc-CCCCCEEeecC---CCCcccc
Q 046086 709 HIEISS----------CSNLKR--FPEISSSCNREGSTEVLHLKGNNLE-RIPESIRH-LSKLKSLDISY---CEWLHTL 771 (966)
Q Consensus 709 ~L~Ls~----------~~~l~~--~p~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~i~~-l~~L~~L~L~~---n~~l~~l 771 (966)
+|++++ |+..+. ++.....|+ +|++|+++.|+++ ..+..+.. +++|+.|++++ |...+..
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ---ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT---TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCc---cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 888874 444432 222223333 7777777777776 33444543 77777777762 2222222
Q ss_pred C---------CCCCCcceeecccCcc-------------cccccCCCCccCceeecceeecCCC-CCCCCccccCCCcEE
Q 046086 772 P---------ELPRNLYHLEAHHCTL-------------LEALSGFSLTHNNKWIHRRMYFPGN-EIPKWFRYQSMGSSV 828 (966)
Q Consensus 772 p---------~~~~~L~~L~~~~c~~-------------L~~L~~l~ls~N~l~~~~~~~~p~~-~iP~~~~~~~~~~~l 828 (966)
| ...++|+.|+++.|.. +++|+.|++++|.+ ++ .+|.++..++.+..+
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l---------~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE---------SDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS---------SHHHHHHHHTCCTTCCEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC---------CHHHHHHHHhcCcccCee
Confidence 1 1245677777755432 44566667777765 22 445555666666666
Q ss_pred EEE
Q 046086 829 TLE 831 (966)
Q Consensus 829 ~~~ 831 (966)
++.
T Consensus 494 ~l~ 496 (592)
T 3ogk_B 494 EMR 496 (592)
T ss_dssp EEE
T ss_pred ecc
Confidence 664
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=2.2e-18 Score=193.46 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=135.1
Q ss_pred EEecCCCCccc-c---cccccceEeecCCCCCcccc-----ccccccc-ccceecccCCCCCCCCC-CCCCC-----ccC
Q 046086 528 FEWHEFPLKTL-N---IRAENLVSLKLPGSNVEQLW-----DDVQNLV-NIKEIDLHGSKQLSKLP-DLSQA-----RNL 591 (966)
Q Consensus 528 L~l~~~~l~~l-p---~~l~~L~~L~L~~n~i~~l~-----~~~~~l~-~L~~L~Ls~n~~~~~~p-~l~~l-----~~L 591 (966)
++++.+.+... | ..+.+|++|+|++|.++..+ ..+..++ +|++|+|++|.+....+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45555665533 2 34455888888888877665 4566777 78888888887655444 24443 778
Q ss_pred cEEeccCccCCcccccc----ccCC-CcccEEeccCCCCCcccCCcc-----C-CCcccEEEecCCCCCCCCc----ccc
Q 046086 592 ERLKLDGCSSLMETHSS----IQYL-NKLEVLDLRLCESLRSLPDTI-----C-SESLFELRLWGCLNLKNFP----EIS 656 (966)
Q Consensus 592 ~~L~L~~~~~~~~~~~~----l~~l-~~L~~L~L~~n~~l~~lp~~~-----~-l~~L~~L~L~~~~~l~~~p----~~~ 656 (966)
++|+|++|.+....+.. +..+ ++|++|+|++|.+....+..+ . .++|++|+|++|......+ ...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888887765555443 3334 778888888776543322222 1 2467777777775443211 111
Q ss_pred ---cCcccEEeecccccccccc-----cccCC-CCCCEEeccCCCCcc----cccccccC-CCCCcEEEccCCCCCcccc
Q 046086 657 ---SSHIHFLDLYECGIEDMPL-----SIECL-SKLNSLDIHNCTRLE----YIKSSIFK-LKSLKHIEISSCSNLKRFP 722 (966)
Q Consensus 657 ---~~~L~~L~L~~n~i~~lp~-----~~~~l-~~L~~L~L~~n~~~~----~~p~~l~~-l~~L~~L~Ls~~~~l~~~p 722 (966)
..+|++|+|++|.++..+. .+..+ ++|+.|+|++|.+.. .++..+.. .++|++|+|++|.....-+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 1146666666666654322 23344 467777777665543 24444444 2466667766654433222
Q ss_pred ccc-cCCCCCCCccEEEcCCCCccc--------cchHhhcCCCCCEEeecCCCCccc
Q 046086 723 EIS-SSCNREGSTEVLHLKGNNLER--------IPESIRHLSKLKSLDISYCEWLHT 770 (966)
Q Consensus 723 ~~~-~~~~~~~~L~~L~Ls~n~l~~--------lp~~i~~l~~L~~L~L~~n~~l~~ 770 (966)
..+ ..+..+++|+.|+|++|.+.. ++..+.++++|+.|++++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 111 111223366666666666332 233345566666666666665433
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=4.5e-18 Score=190.87 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=175.7
Q ss_pred EeecCCCCCcccccc-cccccccceecccCCCCCCCCC-----CCCCCc-cCcEEeccCccCCccccccccCC-----Cc
Q 046086 547 SLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLP-----DLSQAR-NLERLKLDGCSSLMETHSSIQYL-----NK 614 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-----~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l-----~~ 614 (966)
.+++++|+++..... +...++|++|+|++|.+....+ .+..++ +|++|+|++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467899999865444 5555569999999998665543 266788 89999999998877767666665 99
Q ss_pred ccEEeccCCCCCcccCCcc-----CC-CcccEEEecCCCCCCCCcccc-------cCcccEEeecccccc-----ccccc
Q 046086 615 LEVLDLRLCESLRSLPDTI-----CS-ESLFELRLWGCLNLKNFPEIS-------SSHIHFLDLYECGIE-----DMPLS 676 (966)
Q Consensus 615 L~~L~L~~n~~l~~lp~~~-----~l-~~L~~L~L~~~~~l~~~p~~~-------~~~L~~L~L~~n~i~-----~lp~~ 676 (966)
|++|+|++|.+....+..+ .+ ++|++|+|++|......+..+ ..+|++|+|++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999998655544432 33 789999999998655443221 237999999999988 45556
Q ss_pred ccCCC-CCCEEeccCCCCccccccc----ccCC-CCCcEEEccCCCCCcc----ccccccCCCCCCCccEEEcCCCCccc
Q 046086 677 IECLS-KLNSLDIHNCTRLEYIKSS----IFKL-KSLKHIEISSCSNLKR----FPEISSSCNREGSTEVLHLKGNNLER 746 (966)
Q Consensus 677 ~~~l~-~L~~L~L~~n~~~~~~p~~----l~~l-~~L~~L~Ls~~~~l~~----~p~~~~~~~~~~~L~~L~Ls~n~l~~ 746 (966)
+..++ +|+.|+|++|.+....+.. +..+ ++|++|+|++|..... ++..+... .++|+.|+|++|.++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI--PNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS--CTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC--CCCceEEECcCCCCCc
Confidence 66666 9999999999877665543 4455 5999999999764431 44444331 2389999999999886
Q ss_pred cch-----HhhcCCCCCEEeecCCCCccccCCCCCCcceeecccCcccccccCCCCccCce
Q 046086 747 IPE-----SIRHLSKLKSLDISYCEWLHTLPELPRNLYHLEAHHCTLLEALSGFSLTHNNK 802 (966)
Q Consensus 747 lp~-----~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~L~~L~~l~ls~N~l 802 (966)
.+. .+..+++|+.|+|++|.+....+.....+ ...++.+++|..|++++|.+
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l----~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL----GAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH----HTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH----HHHhccCCceEEEecCCCcC
Confidence 542 34678899999999997332221111000 12344566677788999987
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.7e-16 Score=186.84 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=136.1
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
..+.++..+++..+.+..+.. +..|++|+.|++++|.+ ..+|.+..+++|+.|+|++|.+....+ +..+++|+.|+
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345566777777777776543 56788888888888874 456678888888888888887655443 78888888888
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccc
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKS 699 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 699 (966)
|++|.+ ..+|....+++|+.|+|++ |.++.+| .+..+++|+.|+|++|.+.+. .
T Consensus 94 Ls~N~l-~~l~~l~~l~~L~~L~Ls~----------------------N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~ 147 (605)
T 1m9s_A 94 LDENKI-KDLSSLKDLKKLKSLSLEH----------------------NGISDIN-GLVHLPQLESLYLGNNKITDI--T 147 (605)
T ss_dssp CCSSCC-CCCTTSTTCTTCCEEECTT----------------------SCCCCCG-GGGGCTTCSEEECCSSCCCCC--G
T ss_pred CcCCCC-CCChhhccCCCCCEEEecC----------------------CCCCCCc-cccCCCccCEEECCCCccCCc--h
Confidence 888764 3344322445454444444 4444443 366777888888888766554 4
Q ss_pred cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCccc
Q 046086 700 SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLHT 770 (966)
Q Consensus 700 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~ 770 (966)
.+..+++|+.|+|++|...+..| +..+ ++|+.|+|++|.|+.+| .+..+++|+.|+|++|++.+.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l---~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGL---TKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTC---TTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccC---CCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 57778888888888876554444 4433 38888888888888876 578888888888888887654
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=1.3e-15 Score=169.88 Aligned_cols=290 Identities=15% Similarity=0.088 Sum_probs=176.9
Q ss_pred cccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh---ccCCHH
Q 046086 126 TFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ---ENGGLA 202 (966)
Q Consensus 126 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~---~~~~~~ 202 (966)
.++.....|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+... ... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCR-ELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHH-HHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEee-cccccccCCCHH
Confidence 44556778999999999999998653 6899999999999999999998752 5666532 211 111333
Q ss_pred HHHHHHHHHHhC---------------C-CC--CCCChhhhHHHHHHHhcC-CcEEEEEecCCChH--------H-HHHH
Q 046086 203 HLRQQLLSTLLN---------------D-RN--VKNSPNIVLNFQSKRFTR-KKVLIVFDDVTHLK--------Q-IEFL 254 (966)
Q Consensus 203 ~l~~~ll~~l~~---------------~-~~--~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~--------~-~~~l 254 (966)
.+.+.+...+.. . .. ...........+.+.... ++++|||||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 444444433221 0 00 012334444455544432 48999999996633 2 2323
Q ss_pred hcccCCCCCCcEEEEEeCchhhhhc-----------C-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHH
Q 046086 255 IGRIDWLASGSRIIITTRDKHVLSN-----------C-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAV 322 (966)
Q Consensus 255 ~~~~~~~~~gs~IIiTTR~~~v~~~-----------~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv 322 (966)
...... .++.++|+|++....... . .....+++.+|+.+|+.+++....-...... ..+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 222111 257889999987643211 1 1124789999999999999987542211111 134678999
Q ss_pred HHcCCCchhHHhHhhhhcC-CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCC---ChhhHhHhhhcccccCCCCHHHHHH
Q 046086 323 KYAKGVPLALKVLGSFLFG-RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGL---DDHEQGIFLDISCFLVGEDRDQVMR 398 (966)
Q Consensus 323 ~~~~G~PLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~~ 398 (966)
+.++|+|+++..++..+.. .+...+.. .+. ..+...+.-.+..+ ++..+.++..+|+ .......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHH---HHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999876432 22222211 110 01111111112222 7889999999998 2345566665
Q ss_pred HHhHc--CCCh---hcchhhhhcCcceeEecCEEEe-cHHHHHHH
Q 046086 399 FLNSC--GFFA---EVGLSVRVDKSLITIDYNTIRM-HDFLRDMG 437 (966)
Q Consensus 399 ~~~~~--g~~~---~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~~ 437 (966)
.+... +... ...++.|.+.++|...++.|.+ |++++++.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 55322 2322 4568899999999987777775 67777764
No 104
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.67 E-value=7.3e-18 Score=162.90 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=73.1
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccccccchhhHHHHH
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLE 77 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~~g~~~~~~~~~~ 77 (966)
|++|.++|.+||++|+++|+|+|++|++|.||++||.++++|.+.+++.|+||||+|+|++||+|.|.|+++|+...
T Consensus 60 G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 60 GDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp TCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred ccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 88999999999999999999999999999999999999999988888999999999999999999999999877543
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.1e-15 Score=159.81 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=135.8
Q ss_pred cccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEe
Q 046086 566 VNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRL 643 (966)
Q Consensus 566 ~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L 643 (966)
...++++++++.+. .+| .+. ++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..+ .+++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE------ 84 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc------
Confidence 46778888888754 455 343 688889999888777777788888888888888887555444333 3444
Q ss_pred cCCCCCCCCcccccCcccEEeecccccccccc-cccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccc
Q 046086 644 WGCLNLKNFPEISSSHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP 722 (966)
Q Consensus 644 ~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p 722 (966)
|++|+|++|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|++|+|++|...+..+
T Consensus 85 ----------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 85 ----------------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp ----------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ----------------CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 5555566666666654 57889999999999998887767778999999999999976554434
Q ss_pred ccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCccc
Q 046086 723 EISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWLHT 770 (966)
Q Consensus 723 ~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~ 770 (966)
..+..+. +|+.|+|++|.++.+|. .+..+++|+.|+|++|++...
T Consensus 149 ~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLT---NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCT---TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCc---CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3455544 99999999999998876 688999999999999997654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=4.9e-16 Score=168.40 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=131.2
Q ss_pred ccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
.+.++..+.+..+.+..+ .....+++|++|++++|.+ ..++.+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 22 ~l~~~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCcccc-cchhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 344555556666666554 2345677777888877764 344667777778888887776554333 777777788877
Q ss_pred cCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCccccccc
Q 046086 621 RLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSS 700 (966)
Q Consensus 621 ~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~ 700 (966)
++|.. ..+|....+++ |+.|++++|.++.++ .+..+++|+.|++++|.+.+. ..
T Consensus 98 ~~n~l-~~~~~l~~l~~----------------------L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 98 DENKV-KDLSSLKDLKK----------------------LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp CSSCC-CCGGGGTTCTT----------------------CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG
T ss_pred CCCcC-CCChhhccCCC----------------------CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hh
Confidence 77653 33443224444 444445555555553 467788888888888876554 46
Q ss_pred ccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCcc
Q 046086 701 IFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 701 l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 769 (966)
+..+++|+.|++++|...+ ++. +.. +++|+.|+|++|.++.+| .+..+++|+.|++++|++..
T Consensus 152 l~~l~~L~~L~L~~N~l~~-~~~-l~~---l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISD-IVP-LAG---LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGCTTCSEEECCSSCCCC-CGG-GTT---CTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEEccCCcccc-chh-hcC---CCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 7788888888888876544 333 443 348999999999999887 48899999999999998654
No 107
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=8.2e-16 Score=172.03 Aligned_cols=290 Identities=14% Similarity=0.076 Sum_probs=171.7
Q ss_pred cccCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh--ccCCHHH
Q 046086 126 TFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ--ENGGLAH 203 (966)
Q Consensus 126 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--~~~~~~~ 203 (966)
.++.....|+||+.++++|.+ +.. +++.|+|++|+|||||+++++++... ..+|+... ... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLR-KFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGG-GGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEch-hhccccCCCHHH
Confidence 344566789999999999999 743 68999999999999999999988653 24666532 210 0112222
Q ss_pred HHHHHHHHHh-------------CCC------C----------CCCChhhhHHHHHHHhcCCcEEEEEecCCChH-----
Q 046086 204 LRQQLLSTLL-------------NDR------N----------VKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----- 249 (966)
Q Consensus 204 l~~~ll~~l~-------------~~~------~----------~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----- 249 (966)
+...+...+. ... . ...........+.+... ++++|||||++...
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 2222222211 100 0 01122333333333222 49999999996532
Q ss_pred HHHHHhcccCCCCCCcEEEEEeCchhhhhc----------C-C-cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHH
Q 046086 250 QIEFLIGRIDWLASGSRIIITTRDKHVLSN----------C-L-VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKEL 317 (966)
Q Consensus 250 ~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 317 (966)
++..++..+....++.++|+|+|....... . + ....+++.+|+.+|+.+++.............
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 221222111111247899999997643211 1 1 13578999999999999998754211111222
Q ss_pred HHHHHHHcCCCchhHHhHhhhhcC-CCHHHHHHH-HHHHhcCCCchHHHHHH-Hhhc--CCChhhHhHhhhcccccCCCC
Q 046086 318 TQEAVKYAKGVPLALKVLGSFLFG-RRKEEWKSA-MKKMEIVPHMEIQEVLK-ISYD--GLDDHEQGIFLDISCFLVGED 392 (966)
Q Consensus 318 ~~~iv~~~~G~PLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~~~ 392 (966)
..++++.++|+|+++..++..+.. .+...|... .+.. ...+...+. ..++ .|++.++.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 278999999999999999877642 333333221 1111 011112222 2221 688899999999998 3 2 5
Q ss_pred HHHHHHHHh-HcC--CC---hhcchhhhhcCcceeEecCEEE-ecHHHHHHH
Q 046086 393 RDQVMRFLN-SCG--FF---AEVGLSVRVDKSLITIDYNTIR-MHDFLRDMG 437 (966)
Q Consensus 393 ~~~l~~~~~-~~g--~~---~~~~l~~L~~~sLi~~~~~~~~-mHdll~~~~ 437 (966)
...+...+. ..| .. ....++.|.+.++|...++.|+ .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 666654432 223 22 2456899999999988767777 578888763
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=4.7e-18 Score=204.36 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=14.5
Q ss_pred ccceEeecCCC-CCcccccccccccccceeccc
Q 046086 543 ENLVSLKLPGS-NVEQLWDDVQNLVNIKEIDLH 574 (966)
Q Consensus 543 ~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~Ls 574 (966)
++|++|+|++| .+..++..+..+++|++|+++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 44555555444 333344444444444444433
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.7e-18 Score=204.64 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=146.2
Q ss_pred ccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe-
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD- 619 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~- 619 (966)
..++|+.|+|++|+++.+|..++++++|+.|++++|..+..+| . .+..+...+..|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~-ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------L-LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------H-HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------H-HHHhcccccCCHHHHHHHHhcccCcc
Confidence 4678999999999999999999999999999997764211111 0 1112334556677888888888888
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccc
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKS 699 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 699 (966)
++.|. . .+|..+.+++|.... +| ...|+.|+|++|.++.+|. ++.+++|+.|+|++|.+. .+|.
T Consensus 417 l~~n~-~---------~~L~~l~l~~n~i~~-l~---~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 417 MRAAY-L---------DDLRSKFLLENSVLK-ME---YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp GGHHH-H---------HHHHHHHHHHHHHHH-HH---HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred hhhcc-c---------chhhhhhhhcccccc-cC---ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccch
Confidence 55432 1 233444444443211 11 1147888888888888887 888889999999988766 7788
Q ss_pred cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcccc--chHhhcCCCCCEEeecCCCCccccCC
Q 046086 700 SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERI--PESIRHLSKLKSLDISYCEWLHTLPE 773 (966)
Q Consensus 700 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~n~~l~~lp~ 773 (966)
.++++++|+.|+|++|... .+| .+..+. +|+.|+|++|.|+.+ |..+..+++|+.|+|++|++.+..|.
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~---~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALE-NVD-GVANLP---RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGGCTTCCEEECCSSCCC-CCG-GGTTCS---SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred hhhcCCCCCEEECCCCCCC-CCc-ccCCCC---CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8888999999999886654 466 455443 889999999999877 78888999999999999987665553
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=3.8e-16 Score=185.64 Aligned_cols=103 Identities=22% Similarity=0.192 Sum_probs=57.9
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
..+.+|+.|++++|.+..++ .+..+++|+.|+|++|.+... +.+..+++|+.|+|++|.+.. + +.+..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence 44556666666666666654 466666666666666654433 336666666666666665433 2 2566666666666
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCC
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCL 647 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~ 647 (966)
|++|.+. .+|....+++|+.|+|++|.
T Consensus 116 Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 116 LEHNGIS-DINGLVHLPQLESLYLGNNK 142 (605)
T ss_dssp CTTSCCC-CCGGGGGCTTCSEEECCSSC
T ss_pred ecCCCCC-CCccccCCCccCEEECCCCc
Confidence 6666533 23332244555555555443
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.8e-15 Score=153.83 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=96.5
Q ss_pred EEEecCCCCcccc-cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCc
Q 046086 527 YFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 527 ~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~ 603 (966)
.++.+++.+..+| ..+.+|++|++++|+++.++.. +..+++|++|++++|++....+. |..+++|++|+|++|.+..
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 3455555556666 4455666666666666666544 45666666666666665433332 5566666666666665554
Q ss_pred cccccccCCCcccEEeccCCCCCcccCCc-c-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccccccccc-ccCC
Q 046086 604 ETHSSIQYLNKLEVLDLRLCESLRSLPDT-I-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS-IECL 680 (966)
Q Consensus 604 ~~~~~l~~l~~L~~L~L~~n~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l 680 (966)
..+..+..+++|++|++++|.+. .+|.. + .+++ |+.|++++|.++.+|.. +..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~----------------------L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ----------------------LKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT----------------------CCEEECCSSCCSCCCTTTTTTC
T ss_pred cCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCc----------------------CCEEECCCCccceeCHHHhccC
Confidence 44444566666666666655433 23321 2 3333 44455555555555443 5566
Q ss_pred CCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccC
Q 046086 681 SKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSS 727 (966)
Q Consensus 681 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~ 727 (966)
++|+.|++++|.+. +.+++|+.|+++.|...+.+|..++.
T Consensus 148 ~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 148 TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 66666666666433 23456666666666666666665544
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.9e-15 Score=152.06 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=126.0
Q ss_pred cccccCCCCCCceeEEEecCCCCcccc----cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCCC-CC
Q 046086 513 MLSHFKGVPFTDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LS 586 (966)
Q Consensus 513 ~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~ 586 (966)
.+..+|.....+|++|++++|.++.+| ..+.+|++|+|++|+++.++.. +..+++|++|+|++|++....+. +.
T Consensus 18 ~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 345666666678888999988888887 3678999999999999988776 68899999999999987755554 78
Q ss_pred CCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCc-c-CCCcccEEEecCCCCCCCCcccccCcccEEe
Q 046086 587 QARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDT-I-CSESLFELRLWGCLNLKNFPEISSSHIHFLD 664 (966)
Q Consensus 587 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~ 664 (966)
++++|++|++++|.+....+..+..+++|++|+|++|.+.+ +|.. + .+++|+.|++++|......| +|+.|+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~L~ 171 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLS 171 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCCTT-----TTHHHH
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecCCC-----CHHHHH
Confidence 99999999999998776666678999999999999987654 4443 4 67888888888886554433 266666
Q ss_pred ecccccc-cccccccCCCC
Q 046086 665 LYECGIE-DMPLSIECLSK 682 (966)
Q Consensus 665 L~~n~i~-~lp~~~~~l~~ 682 (966)
++.|.++ .+|.+++.++.
T Consensus 172 ~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 172 EWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHCTTTBBCTTSSBCT
T ss_pred HHHHhCCceeeccCccccC
Confidence 6666665 55655555444
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=2.2e-15 Score=153.18 Aligned_cols=151 Identities=21% Similarity=0.248 Sum_probs=100.7
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
..+++|++|++++|.++.+| ++..+++|++|++++|. ...++.+..+++|++|++++|.+....+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45667788888888888777 67788888888888884 44555677788888888888777766777788888888888
Q ss_pred ccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCccccc
Q 046086 620 LRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIK 698 (966)
Q Consensus 620 L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p 698 (966)
+++|...+..|..+ .+++|++|++++|.. ++.+| .+..+++|+.|++++|.+.. ++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~---------------------i~~~~-~l~~l~~L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGA---------------------ITDIM-PLKTLPELKSLNIQFDGVHD-YR 175 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTB---------------------CCCCG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCC---------------------ccccH-hhcCCCCCCEEECCCCCCcC-hH
Confidence 88777655555444 555555555555542 33444 35556666666666665443 22
Q ss_pred ccccCCCCCcEEEccCCC
Q 046086 699 SSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 699 ~~l~~l~~L~~L~Ls~~~ 716 (966)
.+..+++|++|++++|+
T Consensus 176 -~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TGGGCSSCCEEEECBC-
T ss_pred -HhccCCCCCEEEeeCcc
Confidence 45566666666666654
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=2.6e-15 Score=162.63 Aligned_cols=165 Identities=22% Similarity=0.236 Sum_probs=79.9
Q ss_pred cceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 544 NLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
+|++|++++|.++.++ ++..+++|++|+|++|++....+ +.++++|+.|++++|.+.. + +.+..+++|++|++++|
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCC
Confidence 3344444444443332 23344444444444443322211 4444444444444443222 1 12444444444444444
Q ss_pred CCCcccCCccCCCcccEEEecCCCCCCCCccc-ccCcccEEeecccccccccccccCCCCCCEEeccCCCCccccccccc
Q 046086 624 ESLRSLPDTICSESLFELRLWGCLNLKNFPEI-SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIF 702 (966)
Q Consensus 624 ~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~ 702 (966)
.+ ..++....+++|+.|++++|..... +.. ...+|+.|++++|.++.++. +..+++|+.|++++|.+.. +| .+.
T Consensus 123 ~i-~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~ 197 (291)
T 1h6t_A 123 GI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALA 197 (291)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGT
T ss_pred cC-CCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhc
Confidence 32 2222222444444444444433222 211 11256666777777776655 7777788888888876544 34 377
Q ss_pred CCCCCcEEEccCCCC
Q 046086 703 KLKSLKHIEISSCSN 717 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~ 717 (966)
.+++|+.|++++|+.
T Consensus 198 ~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 198 GLKNLDVLELFSQEC 212 (291)
T ss_dssp TCTTCSEEEEEEEEE
T ss_pred cCCCCCEEECcCCcc
Confidence 778888888887653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1e-15 Score=163.14 Aligned_cols=174 Identities=19% Similarity=0.150 Sum_probs=127.4
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
..+.+++.++++++.++.++ .+..+++|++|++++|.+ ..+|.+..+++|+.|+|++|.+... +. +..+++|++|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 45677888889999998887 688899999999999874 4567888889999999998876554 33 88888889998
Q ss_pred ccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccc
Q 046086 620 LRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKS 699 (966)
Q Consensus 620 L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~ 699 (966)
|++|.+ ..+|.... + +|+.|++++|.++.+| .+..+++|+.|+|++|++.+. +
T Consensus 92 L~~N~l-~~l~~~~~-~----------------------~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 92 VNRNRL-KNLNGIPS-A----------------------CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V- 144 (263)
T ss_dssp CCSSCC-SCCTTCCC-S----------------------SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-
T ss_pred CCCCcc-CCcCcccc-C----------------------cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-
Confidence 888764 33443222 3 3666666666676665 477888888888888876543 3
Q ss_pred cccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccccch
Q 046086 700 SIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERIPE 749 (966)
Q Consensus 700 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~ 749 (966)
.+..+++|+.|++++|...+. ..+. .+++|+.|++++|.++..|.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~---~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLT---RLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTST---TCCCCCEEEEEEEEEECCCE
T ss_pred HHccCCCCCEEECCCCcCcch--HHhc---cCCCCCEEeCCCCcccCCcc
Confidence 577788888888888665443 2233 34488888888888876663
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=6e-17 Score=194.64 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=14.5
Q ss_pred cccccceecccCCCCCCCCCC-CCCCccCcEEecc
Q 046086 564 NLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLD 597 (966)
Q Consensus 564 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 597 (966)
.+++|++|+|++|.....+|. +..+++|+.|++.
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 345555555555432222221 3344445555433
No 117
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=3.5e-14 Score=162.23 Aligned_cols=280 Identities=12% Similarity=0.079 Sum_probs=169.3
Q ss_pred CCccccccchHHHHHHhh-hc--CC--CCceEEEE--eecCCCchhHHHHHHHHHhhcc-----CC-ceEEEEeehhhhc
Q 046086 131 NKELVGVECPINEIESLL-RT--GS--AGVCKLGI--WGIGGIGKTTIAGAVFNKTSRH-----FE-GSYFAHNVQEAQE 197 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~-~~~~~~~~~~~~~ 197 (966)
+..++||+.++++|.+.+ .. .. ...+.+.| +|++|+||||||++++++.... +. ..+|+.+ ..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA----FN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----GG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----CC
Confidence 468999999999999988 42 11 23456666 9999999999999999987653 22 2345542 12
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CCChhhhHHHHHHHhc--CCcEEEEEecCCCh--------HHHHHHhcccCCC---C-
Q 046086 198 NGGLAHLRQQLLSTLLNDRNV-KNSPNIVLNFQSKRFT--RKKVLIVFDDVTHL--------KQIEFLIGRIDWL---A- 262 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--------~~~~~l~~~~~~~---~- 262 (966)
......+..+++..+...... ..+.......+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 345667777877777543221 2233445556666654 67999999999664 3344333322211 2
Q ss_pred -CCcEEEEEeCchhhhhcC---------CcceeEeeccCChhhHHHHHhhhh---cCCCCCCccHHHHHHHHHHHcC---
Q 046086 263 -SGSRIIITTRDKHVLSNC---------LVDQIYEVKELLDVDALKLFSRRA---FGEDDPNASYKELTQEAVKYAK--- 326 (966)
Q Consensus 263 -~gs~IIiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~~~--- 326 (966)
.+..+|+|||...+.... .....+++++|+.+++.++|..++ +..... ..+....+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYGEDK 253 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHCGGG
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHhc
Confidence 344578888766432110 112348999999999999997654 322111 2356788999999
Q ss_pred ---CCchhHHhHhhhh------cC---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccC----C
Q 046086 327 ---GVPLALKVLGSFL------FG---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLV----G 390 (966)
Q Consensus 327 ---G~PLal~~~g~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~ 390 (966)
|+|..+..+.... .+ .+.+.+..++..... ...+.-+++.||+.++.++..+|.+.. .
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9997655544321 11 123334433332210 234555678999999999999987642 1
Q ss_pred CCHHHHHH----HH-hHcCCC------hhcchhhhhcCcceeEe
Q 046086 391 EDRDQVMR----FL-NSCGFF------AEVGLSVRVDKSLITID 423 (966)
Q Consensus 391 ~~~~~l~~----~~-~~~g~~------~~~~l~~L~~~sLi~~~ 423 (966)
.....+.. +. ...|.. ....++.|.+.+||...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 23433322 22 233322 13457889999999875
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.5e-14 Score=146.91 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEee
Q 046086 586 SQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDL 665 (966)
Q Consensus 586 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L 665 (966)
..+++|+.|++++|.+. .+| .+..+++|++|++++|. ...++....++ +|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~----------------------~L~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYNPISGLS----------------------NLERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCT----------------------TCCEEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcchhhhcCC----------------------CCCEEEe
Confidence 45566666666665543 444 46666666666666652 22222211233 4666666
Q ss_pred ccccccc-ccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCc
Q 046086 666 YECGIED-MPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNL 744 (966)
Q Consensus 666 ~~n~i~~-lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l 744 (966)
++|.++. .|..++.+++|+.|++++|.+.+..|..+..+++|++|++++|...+.+| .+..++ +|+.|++++|.+
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~---~L~~L~l~~n~i 171 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP---ELKSLNIQFDGV 171 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS---SCCEEECTTBCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC---CCCEEECCCCCC
Confidence 6667764 56778899999999999999888888889999999999999987667776 345444 899999999999
Q ss_pred cccchHhhcCCCCCEEeecCCCCc
Q 046086 745 ERIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 745 ~~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
+.++ .+..+++|++|++++|++.
T Consensus 172 ~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCT-TGGGCSSCCEEEECBC---
T ss_pred cChH-HhccCCCCCEEEeeCcccC
Confidence 9988 8899999999999999853
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3e-14 Score=159.45 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=33.4
Q ss_pred EeecCCCCCcccccccccccccceecccCCCCCCCCCC-CC-CCccCcEEeccCccCCccccccccCCCcccEEeccCCC
Q 046086 547 SLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LS-QARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCE 624 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 624 (966)
.+++++++++.+|..+. ..++.|+|++|++....+. +. ++++|+.|+|++|.+....+..|..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34444444444444332 2344444444443332222 33 44455555555444443333445555555555555444
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=3.5e-14 Score=158.95 Aligned_cols=170 Identities=18% Similarity=0.121 Sum_probs=114.9
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCcccccc-cc-cccccceecccCCCCCCCCCC-CCCCccCcEEeccCccC
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD-VQ-NLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSS 601 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~-~~-~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~ 601 (966)
+.++++++.++.+| ..+..++.|+|++|+|+.++.. +. ++++|++|+|++|++....+. |.++++|++|+|++|.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 46777777788888 5556688888888888887765 44 788888888888876655553 88888888888888877
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccc---
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSI--- 677 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~--- 677 (966)
....+..|..+++|+.|+|++|.+....|..+ .+++|+.|+|++| .++.+|..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~l~~~~~~~ 158 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN----------------------QISRFPVELIKD 158 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS----------------------CCCSCCGGGTC-
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC----------------------cCCeeCHHHhcC
Confidence 66666678888888888888887554444444 4455555444444 444444432
Q ss_pred -cCCCCCCEEeccCCCCcccccccccCCCC--CcEEEccCCCC
Q 046086 678 -ECLSKLNSLDIHNCTRLEYIKSSIFKLKS--LKHIEISSCSN 717 (966)
Q Consensus 678 -~~l~~L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~Ls~~~~ 717 (966)
..+++|+.|+|++|.+....+..+..++. |+.|+|++|+.
T Consensus 159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 45667777777777655544455556665 36677777653
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.4e-13 Score=143.28 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=84.3
Q ss_pred ceEeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 545 LVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 545 L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
.+.++.+++++..+|.++. ++|++|+|++|.+....|. |.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4556666666666666553 6666677776665555443 566666666666666554333344566666666666665
Q ss_pred CCCcccCCc-c-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccc
Q 046086 624 ESLRSLPDT-I-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSI 701 (966)
Q Consensus 624 ~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l 701 (966)
.+. .+|.. + .++ +|+.|+|++|.++.+|..+..+++|+.|+|++|.+....+..+
T Consensus 99 ~l~-~l~~~~~~~l~----------------------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLV----------------------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCC-CCCTTTTTTCT----------------------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred cCC-ccChhHhCcch----------------------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 432 22221 1 222 2444444555555566666666666666666665554444455
Q ss_pred cCCCCCcEEEccCCCC
Q 046086 702 FKLKSLKHIEISSCSN 717 (966)
Q Consensus 702 ~~l~~L~~L~Ls~~~~ 717 (966)
..+++|+.|++++|+.
T Consensus 156 ~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECTTSCB
T ss_pred hCCCCCCEEEeeCCCc
Confidence 5566666666666543
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=143.24 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=69.2
Q ss_pred EeecCCCCCcccccccccccccceecccCCCCCCCCCC--CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCC
Q 046086 547 SLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD--LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCE 624 (966)
Q Consensus 547 ~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 624 (966)
.+++++|.++.+|..+. ..+++|+|++|.+....|. |.++++|+.|+|++|.+....+..|..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44444444444444332 2234455555443333221 4445555555555544443333445555555555555444
Q ss_pred CCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCccccccccc
Q 046086 625 SLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIF 702 (966)
Q Consensus 625 ~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~ 702 (966)
+.+..|..+ .+++| ++|+|++|.++.+ |..+..+++|+.|+|++|.+.+..|..+.
T Consensus 93 l~~~~~~~~~~l~~L----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 93 LENVQHKMFKGLESL----------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CCCCCGGGGTTCSSC----------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred cCccCHhHhcCCcCC----------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 322222212 23333 3333333333333 33455566666666666655555566666
Q ss_pred CCCCCcEEEccCCCC
Q 046086 703 KLKSLKHIEISSCSN 717 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~ 717 (966)
.+++|+.|++++|+.
T Consensus 151 ~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 151 TLHSLSTLNLLANPF 165 (220)
T ss_dssp TCTTCCEEECCSCCE
T ss_pred CCCCCCEEEecCcCC
Confidence 666666666666544
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=142.47 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=114.0
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCccccc--ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccC
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD--DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSS 601 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~ 601 (966)
+.++++++.++.+| ..+..+++|+|++|+++.++. .+..+++|++|+|++|++....+ .|.++++|++|+|++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 46778888888888 556678899999999998843 37899999999999998776666 488999999999999988
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccC
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIEC 679 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~ 679 (966)
.+..+..+..+++|++|+|++|.+.+..|..+ .+++| +.|+|++|.++.+ |..+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV----------------------RLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC----------------------SEEECTTSCCCCBCTTTTTT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC----------------------CEEECCCCcCCEECHHHhcC
Confidence 77777789999999999999888666556544 44444 4444555555555 556777
Q ss_pred CCCCCEEeccCCCCccc
Q 046086 680 LSKLNSLDIHNCTRLEY 696 (966)
Q Consensus 680 l~~L~~L~L~~n~~~~~ 696 (966)
+++|+.|+|++|.+...
T Consensus 152 l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTCCEEECCSCCEECS
T ss_pred CCCCCEEEecCcCCcCC
Confidence 88888888888876543
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.2e-12 Score=144.42 Aligned_cols=274 Identities=16% Similarity=0.030 Sum_probs=173.1
Q ss_pred CccccccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhcc--------CCceEEEEeehhhhccC-C
Q 046086 132 KELVGVECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH--------FEGSYFAHNVQEAQENG-G 200 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~-~ 200 (966)
+.++||+.+++++..++.. .....+.+.|+|++|+||||+|+.+++.+... ....+|+.+. ... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR----EVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH----HHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc----cCCCC
Confidence 6799999999999988763 23445689999999999999999999987443 2233444321 122 4
Q ss_pred HHHHHHHHHHHHhCCCC--CCCChhhhHHHHHHHhcCCcEEEEEecCCChHH-------HHHHhcccCCCCCCcEEEEEe
Q 046086 201 LAHLRQQLLSTLLNDRN--VKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQ-------IEFLIGRIDWLASGSRIIITT 271 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~--~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-------~~~l~~~~~~~~~gs~IIiTT 271 (966)
...+..+++..+.+... ...........+.+.+..++.+|||||++.... +..+... . .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 55666777777643322 122234556667777777666999999976432 3333332 2 678899999
Q ss_pred CchhhhhcC------CcceeEeeccCChhhHHHHHhhhhc---CCCCCCccHHHHHHHHHHHcC---CCch-hHHhHhhh
Q 046086 272 RDKHVLSNC------LVDQIYEVKELLDVDALKLFSRRAF---GEDDPNASYKELTQEAVKYAK---GVPL-ALKVLGSF 338 (966)
Q Consensus 272 R~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~iv~~~~---G~PL-al~~~g~~ 338 (966)
+........ .....+++++++.++..+++..++. .....++ +..+.++++++ |.|. |+..+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 876321111 1123899999999999999998753 2222222 34667777777 8886 44333222
Q ss_pred h------cCCCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccCCCCH-HHHHHHHhHcCCCh----
Q 046086 339 L------FGRRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLVGEDR-DQVMRFLNSCGFFA---- 407 (966)
Q Consensus 339 L------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~g~~~---- 407 (966)
. ...+.+.+..++.... ...+..+++.|++.++.++..++....+.+. +....+....|..+
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 2 1245677777766543 2456677889999999988878761110111 22333333333221
Q ss_pred --hcchhhhhcCcceeEe
Q 046086 408 --EVGLSVRVDKSLITID 423 (966)
Q Consensus 408 --~~~l~~L~~~sLi~~~ 423 (966)
...+..|.++++|...
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 2346788899998764
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=5.6e-16 Score=183.07 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=133.9
Q ss_pred CceeEEEecCCCCcccc---cccccceEeecCCCC--------------Ccccccccccccccceec-ccCCCCCCCCCC
Q 046086 523 TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSN--------------VEQLWDDVQNLVNIKEID-LHGSKQLSKLPD 584 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~--------------i~~l~~~~~~l~~L~~L~-Ls~n~~~~~~p~ 584 (966)
++|+.|++++|.++.+| ..+++|+.|++++|. ...+|..+.++++|+.|+ ++.|.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~------- 421 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY------- 421 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-------
Confidence 67777888888888888 778889999986653 223445566666666666 44442
Q ss_pred CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEe
Q 046086 585 LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLD 664 (966)
Q Consensus 585 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~ 664 (966)
+.+|+.+.+.+|.+.. ++. ..|+.|+|++|.+. .+|....++ +|+.|+
T Consensus 422 ---~~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~-~lp~~~~l~----------------------~L~~L~ 469 (567)
T 1dce_A 422 ---LDDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLT-VLCHLEQLL----------------------LVTHLD 469 (567)
T ss_dssp ---HHHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCS-SCCCGGGGT----------------------TCCEEE
T ss_pred ---cchhhhhhhhcccccc-cCc-----cCceEEEecCCCCC-CCcCccccc----------------------cCcEee
Confidence 2344455555443222 111 13566666655432 344311222 466677
Q ss_pred ecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccc-cccccCCCCCCCccEEEcCCCC
Q 046086 665 LYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRF-PEISSSCNREGSTEVLHLKGNN 743 (966)
Q Consensus 665 L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~-p~~~~~~~~~~~L~~L~Ls~n~ 743 (966)
|++|.++.+|..++.+++|+.|+|++|.+.+ +| .++.+++|+.|+|++|...+.. |..+..++ +|+.|+|++|.
T Consensus 470 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~---~L~~L~L~~N~ 544 (567)
T 1dce_A 470 LSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP---RLVLLNLQGNS 544 (567)
T ss_dssp CCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT---TCCEEECTTSG
T ss_pred cCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC---CCCEEEecCCc
Confidence 7777777888888899999999999997765 67 7889999999999997665554 77777665 89999999999
Q ss_pred ccccchH----hhcCCCCCEEee
Q 046086 744 LERIPES----IRHLSKLKSLDI 762 (966)
Q Consensus 744 l~~lp~~----i~~l~~L~~L~L 762 (966)
|+.+|+. +..+++|+.|++
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCccHHHHHHHHCcccCccCC
Confidence 9877653 345899999874
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.1e-13 Score=141.08 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred EEEecCCCCcccc-cccccceEeecCCCCCccccc-ccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCc
Q 046086 527 YFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWD-DVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 527 ~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~ 603 (966)
.++++++.++.+| ..+.+|++|+|++|+|+.++. .+..+++|++|+|++|++....| .|.++++|++|+|++|.+..
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 3445555555555 233455555555555555543 35555555555555555444333 25555555555555554443
Q ss_pred cccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccc-cccCCC
Q 046086 604 ETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPL-SIECLS 681 (966)
Q Consensus 604 ~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~l~ 681 (966)
..+..+..+++|++|+|++|.+.+..|..+ .++ +|+.|+|++|.++.+|. .+..++
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------------------~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH----------------------NLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------TCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC----------------------CCCEEECCCCcCCEECHHHHhCCC
Confidence 333334455555555555444333223222 222 46666666667776654 477788
Q ss_pred CCCEEeccCCCCc
Q 046086 682 KLNSLDIHNCTRL 694 (966)
Q Consensus 682 ~L~~L~L~~n~~~ 694 (966)
+|+.|+|++|.+.
T Consensus 153 ~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEeCCCCcC
Confidence 8888888888653
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.4e-13 Score=140.62 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=118.4
Q ss_pred ceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCC
Q 046086 545 LVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLC 623 (966)
Q Consensus 545 L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 623 (966)
-+.+++++++++.+|..+. ++|+.|+|++|.+....+ .|..+++|+.|+|++|.+....|..|..+++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678899999999988765 789999999998766555 4888899999999998887777888888999999999887
Q ss_pred CCCcccCCcc--CCCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCccccccc
Q 046086 624 ESLRSLPDTI--CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSS 700 (966)
Q Consensus 624 ~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~ 700 (966)
.+. .+|... ++++ |+.|+|++|.++.+ |..+..+++|+.|+|++|.+.+..+..
T Consensus 91 ~l~-~l~~~~f~~l~~----------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFS----------------------LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCC-CCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCC-ccCHhHccCCCC----------------------CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 643 555432 3444 55566666666665 457889999999999999988888888
Q ss_pred ccCCCCCcEEEccCCCC
Q 046086 701 IFKLKSLKHIEISSCSN 717 (966)
Q Consensus 701 l~~l~~L~~L~Ls~~~~ 717 (966)
+..+++|+.|+|++|+.
T Consensus 148 ~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCEEEeCCCCc
Confidence 99999999999999864
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3e-13 Score=140.88 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=70.9
Q ss_pred cEEEecCCCCCCCCcccccCcccEEeecccccccc-cccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCC
Q 046086 639 FELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSN 717 (966)
Q Consensus 639 ~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 717 (966)
+.++.+++. +..+|.....+|+.|+|++|.++.+ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|..
T Consensus 22 ~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 344444332 3344444444566666666666655 44566666666666666665444444456666666666666544
Q ss_pred CccccccccCCCCCCCccEEEcCCCCccccchHhhcCCCCCEEeecCCCCc
Q 046086 718 LKRFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 718 l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
....+..+..+ ++|+.|+|++|+|+.+|..+..+++|++|+|++|++.
T Consensus 101 ~~l~~~~~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 101 TVLPSAVFDRL---VHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCTTTTTTC---TTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CccChhHhCcc---hhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 33222223332 2666666666666666666666666666666666544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.1e-14 Score=177.67 Aligned_cols=210 Identities=17% Similarity=0.159 Sum_probs=88.1
Q ss_pred CceeEEEecCCCCcccccccccceEeecCC----------CCCcccccccccccccceecccCCCCCCCCC-CCCCCccC
Q 046086 523 TDVRYFEWHEFPLKTLNIRAENLVSLKLPG----------SNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNL 591 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp~~l~~L~~L~L~~----------n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L 591 (966)
..++.|++.++.+...| ...|+.++|+. |.+...+..+..+++|+.|+|++|.+. .+| .+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~~--~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN--QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcch--hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 34555666666555544 11122233333 333333444555566666666665544 333 34455556
Q ss_pred cEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccCcccEEeeccccc
Q 046086 592 ERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGI 670 (966)
Q Consensus 592 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i 670 (966)
++|+|++|.+. .+|..|+.|++|++|+|++|.+. .+|..+ .++ +|++|+|++|.+
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~----------------------~L~~L~L~~N~l 305 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF----------------------QLKYFYFFDNMV 305 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT----------------------TCSEEECCSSCC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC----------------------CCCEEECCCCCC
Confidence 66666555443 55555555555555555555433 444433 222 467777777777
Q ss_pred ccccccccCCCCCCEEeccCCCCcccccccccCCCC-CcEEEccCCCCCccccccccCCCCCCCccEEEcCCC-------
Q 046086 671 EDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKS-LKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGN------- 742 (966)
Q Consensus 671 ~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~-L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n------- 742 (966)
+.+|..|+.|++|+.|+|++|.+.+.+|..+..+.. +..|+|++|...+.+|. .|+.|+++.|
T Consensus 306 ~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---------~l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---------ERRFIEINTDGEPQREY 376 (727)
T ss_dssp CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---------C----------------
T ss_pred CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---------ccceeEeeccccccccc
Confidence 888888999999999999999988888877654422 23467888877776664 5666777766
Q ss_pred -Ccc-ccchHhhcCCCCCEEeecCCCCc
Q 046086 743 -NLE-RIPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 743 -~l~-~lp~~i~~l~~L~~L~L~~n~~l 768 (966)
.+. ..+..+..+.++....+++|-+.
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------CCC
T ss_pred CCccccccchhhcccccceeeeeccccc
Confidence 222 12234456667777788888764
No 130
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=5.9e-14 Score=149.49 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=110.4
Q ss_pred CceeEEEecCCCCcccc--cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCcc
Q 046086 523 TDVRYFEWHEFPLKTLN--IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCS 600 (966)
Q Consensus 523 ~~L~~L~l~~~~l~~lp--~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~ 600 (966)
.++..++++++.++.++ ..+.+|++|++++|+++.++ ++..+++|++|+|++|++....+ +.++++|+.|++++|.
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 44455556666666666 56778888888888888877 67888888888888887554433 8888888888888876
Q ss_pred CCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCcccccCcccEEeecccccccccccccCC
Q 046086 601 SLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECL 680 (966)
Q Consensus 601 ~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l 680 (966)
+.. +|.. .. ++|+.|+|++|.+. .+|....+++ |+.|++++|.++.+| .+..+
T Consensus 97 l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~~l~~l~~----------------------L~~L~Ls~N~i~~~~-~l~~l 149 (263)
T 1xeu_A 97 LKN-LNGI-PS-ACLSRLFLDNNELR-DTDSLIHLKN----------------------LEILSIRNNKLKSIV-MLGFL 149 (263)
T ss_dssp CSC-CTTC-CC-SSCCEEECCSSCCS-BSGGGTTCTT----------------------CCEEECTTSCCCBCG-GGGGC
T ss_pred cCC-cCcc-cc-CcccEEEccCCccC-CChhhcCccc----------------------ccEEECCCCcCCCCh-HHccC
Confidence 544 4432 33 88888888887643 3443224444 444444445555554 46667
Q ss_pred CCCCEEeccCCCCcccccccccCCCCCcEEEccCCCC
Q 046086 681 SKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSN 717 (966)
Q Consensus 681 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 717 (966)
++|+.|+|++|.+.+. ..+..+++|+.|++++|..
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 7777777777766554 5567777777777777654
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=1.9e-12 Score=146.18 Aligned_cols=283 Identities=16% Similarity=0.075 Sum_probs=167.1
Q ss_pred CCCccccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhhccCC---ceEEEEeehhhhccCCHHHH
Q 046086 130 DNKELVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE---GSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~l 204 (966)
.++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+.+++.+...+. ..+|+... .......+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~----~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR----QIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH----HHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC----CCCCHHHH
Confidence 3478999999999999988742 344668999999999999999999998766542 33444421 12234445
Q ss_pred HHHHHHHHhCCCC-CCCChhhhHHHHHHHhc--CCcEEEEEecCCCh------HHHHHHhcccCC-CCCCcEEEEEeCch
Q 046086 205 RQQLLSTLLNDRN-VKNSPNIVLNFQSKRFT--RKKVLIVFDDVTHL------KQIEFLIGRIDW-LASGSRIIITTRDK 274 (966)
Q Consensus 205 ~~~ll~~l~~~~~-~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~------~~~~~l~~~~~~-~~~gs~IIiTTR~~ 274 (966)
...++..+..... ...........+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||++.
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5555444432211 11223344455555554 45899999998653 234444333211 23456778888876
Q ss_pred hhhhcCC-------cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcC---CCchhHHhH-hhhhc---
Q 046086 275 HVLSNCL-------VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAK---GVPLALKVL-GSFLF--- 340 (966)
Q Consensus 275 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~---G~PLal~~~-g~~L~--- 340 (966)
....... ....+.+++++.++..+++...+........-..+....++++++ |.|..+..+ .....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4332211 125799999999999999988642111111112345667777777 999844332 22211
Q ss_pred --C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccC-CC---CHHHH----HHHHhHcCCCh
Q 046086 341 --G---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLV-GE---DRDQV----MRFLNSCGFFA 407 (966)
Q Consensus 341 --~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~---~~~~l----~~~~~~~g~~~ 407 (966)
+ .+.+.++.++.... ...+.-++.+++..++.++..++...+ +. ....+ ..+....|..+
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 1 24555665555432 345667788999999999988886432 22 13222 33333333221
Q ss_pred ------hcchhhhhcCcceeEe
Q 046086 408 ------EVGLSVRVDKSLITID 423 (966)
Q Consensus 408 ------~~~l~~L~~~sLi~~~ 423 (966)
...++.|.+.++|...
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 3447788888888754
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=1.9e-11 Score=138.14 Aligned_cols=279 Identities=15% Similarity=0.107 Sum_probs=168.9
Q ss_pred CCccccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhhccC-----C-ceEEEEeehhhhccCCHH
Q 046086 131 NKELVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-----E-GSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-~~~~~~~~~~~~~~~~~~ 202 (966)
++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++.....+ . ..+++.+ .......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA----RHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET----TTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC----CcCCCHH
Confidence 478999999999999998532 34567899999999999999999999775432 2 2334432 2234555
Q ss_pred HHHHHHHHHHhCCCCC-CCChhhhHHHHHHHh--cCCcEEEEEecCCChH----H---HHHHhcccCCC--CCCcEEEEE
Q 046086 203 HLRQQLLSTLLNDRNV-KNSPNIVLNFQSKRF--TRKKVLIVFDDVTHLK----Q---IEFLIGRIDWL--ASGSRIIIT 270 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~-~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~----~---~~~l~~~~~~~--~~gs~IIiT 270 (966)
.+...++..+...... ..........+.+.+ .+++.+||||+++... . +..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 6667777776543221 222344455556665 3568899999997653 2 22223222111 456678888
Q ss_pred eCchhhhhcC------C-cceeEeeccCChhhHHHHHhhhh---cCCCCCCccHHHHHHHHHHHcC---CCch-hHHhHh
Q 046086 271 TRDKHVLSNC------L-VDQIYEVKELLDVDALKLFSRRA---FGEDDPNASYKELTQEAVKYAK---GVPL-ALKVLG 336 (966)
Q Consensus 271 TR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~~~---G~PL-al~~~g 336 (966)
|+........ . ....+.+++++.++..+++...+ +......+ +..+.++++++ |.|- |+..+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 8876322111 1 12478999999999999998875 22222222 34667777777 9993 333322
Q ss_pred hhhc-----C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccCCCC---HHH----HHHHHh
Q 046086 337 SFLF-----G---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLVGED---RDQ----VMRFLN 401 (966)
Q Consensus 337 ~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~~----l~~~~~ 401 (966)
.... + .+.+.+..++.... ...+.-++..|+..++..++.++....+.+ ... ...+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 2211 1 24566666665542 235666788999999999888885444432 222 222333
Q ss_pred HcCCCh------hcchhhhhcCcceeEe
Q 046086 402 SCGFFA------EVGLSVRVDKSLITID 423 (966)
Q Consensus 402 ~~g~~~------~~~l~~L~~~sLi~~~ 423 (966)
..|..+ ...++.|...+++...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 333211 2346777888888764
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.1e-13 Score=168.64 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=90.2
Q ss_pred cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEE
Q 046086 540 IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVL 618 (966)
Q Consensus 540 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 618 (966)
..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+. .+| .|+++++|++|+|++|.+. .+|..|+.|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 4566777777777777777777777777777777777755 555 4777777777777777655 667777777777777
Q ss_pred eccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccccC---cccEEeecccccc-cccccccCCCCCCEEeccCC
Q 046086 619 DLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEISSS---HIHFLDLYECGIE-DMPLSIECLSKLNSLDIHNC 691 (966)
Q Consensus 619 ~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~---~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n 691 (966)
+|++|. ++.+|..+ .+++|+.|+|++|.+.+.+|..+.. .+..|+|++|.++ .+|. .|..|+++.|
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 777765 35677666 6777777777777766666654433 2233566666665 3333 3455555555
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2e-12 Score=130.58 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=103.1
Q ss_pred cEEEecCCCCCCCCcccccCcccEEeeccccccccccc--ccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCC
Q 046086 639 FELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS--IECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 639 ~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~--~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
++++++++.. +.+|.....+|+.|++++|.++.+|.. ++.+++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCc-CcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 4555655543 455554444688888888888888763 8899999999999999888888899999999999999987
Q ss_pred CCccccccccCCCCCCCccEEEcCCCCcccc-chHhhcCCCCCEEeecCCCCccccC
Q 046086 717 NLKRFPEISSSCNREGSTEVLHLKGNNLERI-PESIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 717 ~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
..+..|..+..+. +|+.|+|++|+|+.+ |..+..+++|++|+|++|++.+..+
T Consensus 90 l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLH---QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCT---TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCC---CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7666665555544 899999999999955 6678899999999999998765543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=129.43 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=101.1
Q ss_pred cEEEecCCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCC
Q 046086 639 FELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNL 718 (966)
Q Consensus 639 ~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l 718 (966)
+.++++++. +..+|.....+|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345555554 3445554555789999999999999988999999999999999888877788999999999999997766
Q ss_pred ccccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCCc
Q 046086 719 KRFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 719 ~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l 768 (966)
...|..+..+. +|+.|+|++|.|+.+|. .+..+++|+.|+|++|++.
T Consensus 92 ~i~~~~f~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLK---SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCT---TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCC---CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555555544 89999999999998886 4788999999999999864
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=2.8e-12 Score=129.50 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=102.6
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCcccccc--cccccccceecccCCCCCCCCC-CCCCCccCcEEeccCccC
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD--VQNLVNIKEIDLHGSKQLSKLP-DLSQARNLERLKLDGCSS 601 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~--~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~~~~ 601 (966)
+.++++++.++.+| ....+|++|+|++|+++.++.. +..+++|++|+|++|++....| .|.++++|++|+|++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 56778888888888 4455889999999999888764 8889999999999998877766 488899999999999888
Q ss_pred CccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCC
Q 046086 602 LMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKN 651 (966)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~ 651 (966)
.+..+..+..+++|++|+|++|.+.+..|..+ .+++|++|+|++|.....
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777778889999999999888777777766 677888888888765543
No 137
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.35 E-value=5.1e-14 Score=133.58 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=65.4
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCcc----cccccc----chhh
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHV----RWQTGI----FGNL 72 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~v----r~~~g~----~~~~ 72 (966)
|+.|.++|.+||++|+++|+|||++|++|.||+.|+.+++.|...+...||||||+|+++++ |..... ....
T Consensus 51 G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~ 130 (146)
T 3ub2_A 51 GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGG 130 (146)
T ss_dssp --CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGG
T ss_pred cccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhh
Confidence 78899999999999999999999999999999999999999974334478899999996554 443322 1223
Q ss_pred HHHHHhhChhhHHHHHHHH
Q 046086 73 FSKLEERFPEMRKRWRNAL 91 (966)
Q Consensus 73 ~~~~~~~~~~~~~~w~~al 91 (966)
|.+ ..+.|.+|++|+
T Consensus 131 f~~----l~~~v~~~~~~~ 145 (146)
T 3ub2_A 131 FRQ----VKEAVMRYLQTL 145 (146)
T ss_dssp HHH----HHHHHHHHHTTC
T ss_pred HHH----HHHHHHHHHHhc
Confidence 322 234788888764
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=2.6e-12 Score=141.80 Aligned_cols=250 Identities=13% Similarity=0.158 Sum_probs=134.5
Q ss_pred CCCCceEEEecCCCccccccCCCCCCceeEEEecCCCCcccc----cc--------cccceEeecCCCCCcccccc-ccc
Q 046086 498 MPKLRFLKFYGKNKCMLSHFKGVPFTDVRYFEWHEFPLKTLN----IR--------AENLVSLKLPGSNVEQLWDD-VQN 564 (966)
Q Consensus 498 l~~L~~L~l~~n~~~~l~~l~~~~~~~L~~L~l~~~~l~~lp----~~--------l~~L~~L~L~~n~i~~l~~~-~~~ 564 (966)
+++|+.|+|++|.... ..........++.+.+..+ .+| .. +.+|+.|+|+. +++.+++. |.+
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEE-ecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 6778888888773221 0222222233444444444 333 23 56666666666 66666554 666
Q ss_pred ccccceecccCCCCCCCCCC-CCCCccCcEEeccCccC----CccccccccCCCccc-EEeccCCCCCcccCCc-----c
Q 046086 565 LVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSS----LMETHSSIQYLNKLE-VLDLRLCESLRSLPDT-----I 633 (966)
Q Consensus 565 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~----~~~~~~~l~~l~~L~-~L~L~~n~~l~~lp~~-----~ 633 (966)
+++|+.|++++|.+....+. |.++.++..+.+..... ....+..+..+.+|+ .+.+... +.+|.. +
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhccc
Confidence 66666666666654433332 55555555554443110 111122344444444 3333321 222221 1
Q ss_pred CCCcccEEEecCCCCCCCCccc--ccCcccEEeecccccccccc-cccCCCCCCEEeccCCCCcccccccccCCCCCc-E
Q 046086 634 CSESLFELRLWGCLNLKNFPEI--SSSHIHFLDLYECGIEDMPL-SIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLK-H 709 (966)
Q Consensus 634 ~l~~L~~L~L~~~~~l~~~p~~--~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~-~ 709 (966)
...++..+.+.++-....+... ...+|+.|+|.+|.++.+|. .|.++++|+.|+|.+| +...-+..|.++++|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 3455566666554211111100 02357778888777777765 4777778888888776 4333345577777787 7
Q ss_pred EEccCCCCCcccc-ccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEe
Q 046086 710 IEISSCSNLKRFP-EISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLD 761 (966)
Q Consensus 710 L~Ls~~~~l~~~p-~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~ 761 (966)
|++.+ .+..++ ..+..|. +|+.|++++|+++.++. .+.++++|+.++
T Consensus 279 l~l~~--~l~~I~~~aF~~c~---~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCD---NLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT--TCCEECTTTTTTCT---TEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc--cceEEchhhhhCCc---cCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77776 333443 4455554 77777777777777765 566777777765
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=6.2e-12 Score=126.96 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=101.3
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCcccccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCc
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~ 603 (966)
+.++++++.++.+| ..+.+|++|+|++|+|+.+|..+.++++|++|+|++|.+....+. |.++++|++|+|++|.+..
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 46778888888888 556789999999999999998899999999999999987766654 8999999999999998887
Q ss_pred cccccccCCCcccEEeccCCCCCcccCCc-c-CCCcccEEEecCCCC
Q 046086 604 ETHSSIQYLNKLEVLDLRLCESLRSLPDT-I-CSESLFELRLWGCLN 648 (966)
Q Consensus 604 ~~~~~l~~l~~L~~L~L~~n~~l~~lp~~-~-~l~~L~~L~L~~~~~ 648 (966)
..+..|..+++|++|+|++|.+. .+|.. + .+++|+.|+|++|..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 77778999999999999988754 55553 3 677788888777753
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.8e-12 Score=125.51 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=78.3
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccc--ccccCCCCCCCccE
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP--EISSSCNREGSTEV 736 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p--~~~~~~~~~~~L~~ 736 (966)
+|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.. ..+| ..+..+ ++|+.
T Consensus 50 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l---~~L~~ 124 (168)
T 2ell_A 50 NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKL---ECLKS 124 (168)
T ss_dssp GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC-CSSGGGGGGSSC---SCCCE
T ss_pred CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc-CcchhHHHHhcC---CCCCE
Confidence 355555555556655 5677888888888888887777777777788888888888754 4444 444444 38899
Q ss_pred EEcCCCCccccch----HhhcCCCCCEEeecCCCC
Q 046086 737 LHLKGNNLERIPE----SIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 737 L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~n~~ 767 (966)
|++++|.++.+|. .+..+++|++|++++|..
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999988876 678899999999999874
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2.9e-12 Score=123.51 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=58.0
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcc-ccccccCCCCCCCccEEE
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKR-FPEISSSCNREGSTEVLH 738 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~-~p~~~~~~~~~~~L~~L~ 738 (966)
|+.|++++|.++.+ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|...+. .|..+..++ +|+.|+
T Consensus 44 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~---~L~~L~ 119 (149)
T 2je0_A 44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE---NLKSLD 119 (149)
T ss_dssp CCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT---TCCEEE
T ss_pred CcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC---CCCEEe
Confidence 44444444444444 4456666666667766666655666666666666666666553321 123444333 666677
Q ss_pred cCCCCccccch----HhhcCCCCCEEeec
Q 046086 739 LKGNNLERIPE----SIRHLSKLKSLDIS 763 (966)
Q Consensus 739 Ls~n~l~~lp~----~i~~l~~L~~L~L~ 763 (966)
+++|.++.+|. .+..+++|+.|+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77776666554 45666666666654
No 142
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=6.5e-12 Score=123.78 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=32.7
Q ss_pred cccEEeeccccccccc--ccccCCCCCCEEeccCCCCccccc---ccccCCCCCcEEEccCCC
Q 046086 659 HIHFLDLYECGIEDMP--LSIECLSKLNSLDIHNCTRLEYIK---SSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~~~~~p---~~l~~l~~L~~L~Ls~~~ 716 (966)
+|++|++++|.++.+| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 3444555555555544 456666666666666665544333 355666666666666643
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=5e-12 Score=121.85 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=94.7
Q ss_pred cccEEeecccccc--cccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccE
Q 046086 659 HIHFLDLYECGIE--DMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEV 736 (966)
Q Consensus 659 ~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~ 736 (966)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|...+.+|..+..+. +|+.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~---~L~~ 92 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP---NLTH 92 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT---TCCE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC---CCCE
Confidence 5888999999988 8898889999999999999987665 7789999999999999887776887766555 9999
Q ss_pred EEcCCCCccccc--hHhhcCCCCCEEeecCCCCccccC
Q 046086 737 LHLKGNNLERIP--ESIRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 737 L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~lp 772 (966)
|++++|.++.+| ..+..+++|++|++++|++.+..+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999999876 789999999999999998765443
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=5.2e-11 Score=134.62 Aligned_cols=282 Identities=14% Similarity=0.054 Sum_probs=167.7
Q ss_pred CCccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHH
Q 046086 131 NKELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+.+++...... ...+++.+ ........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~----~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING----FIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET----TTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC----ccCCCHHHHH
Confidence 36799999999999998864 222334899999999999999999999876543 23444442 2233455666
Q ss_pred HHHHHHHhCCCC-CCCChhhhHHHHHHHhc--CCcEEEEEecCCCh--HHHHHHhcccCCCC----CCcEEEEEeCchhh
Q 046086 206 QQLLSTLLNDRN-VKNSPNIVLNFQSKRFT--RKKVLIVFDDVTHL--KQIEFLIGRIDWLA----SGSRIIITTRDKHV 276 (966)
Q Consensus 206 ~~ll~~l~~~~~-~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IIiTTR~~~v 276 (966)
..++..+..... ...........+.+.+. +++.+||||+++.. ..+..+...+.... .+..||+||++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666666543321 11233444455555443 56889999999764 34555544433221 46788888887643
Q ss_pred hhcCC-------cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHc---------CCCchhHHhHhhhhc
Q 046086 277 LSNCL-------VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYA---------KGVPLALKVLGSFLF 340 (966)
Q Consensus 277 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~---------~G~PLal~~~g~~L~ 340 (966)
..... ....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 32221 11368999999999999998875321001111235678888888 788754443332211
Q ss_pred ------C---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhccccc---CC--CCHHHHHHH----HhH
Q 046086 341 ------G---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFL---VG--EDRDQVMRF----LNS 402 (966)
Q Consensus 341 ------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~----~~~ 402 (966)
+ .+.+....+..... ...+ .-.+..|+.+++.++..++.+. .+ .....+... ...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~---~~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL---FGIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS---CCCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh---hhhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 1 23333444433322 1122 2234568888888888777654 22 233333332 222
Q ss_pred cCCCh------hcchhhhhcCcceeEe
Q 046086 403 CGFFA------EVGLSVRVDKSLITID 423 (966)
Q Consensus 403 ~g~~~------~~~l~~L~~~sLi~~~ 423 (966)
.|..+ ...+..|.++++|...
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 33221 2347889999999874
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.3e-11 Score=120.96 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=97.9
Q ss_pred ccEEEecCCCCCCCCcccccCcccEEeeccccccccccc-ccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCC
Q 046086 638 LFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMPLS-IECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 638 L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
.+.++++++. +..+|.....+|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3455555554 3344544445688888888888877654 6889999999999998776666667889999999999976
Q ss_pred CCccccccccCCCCCCCccEEEcCCCCccccchH-hhcCCCCCEEeecCCCCccccC
Q 046086 717 NLKRFPEISSSCNREGSTEVLHLKGNNLERIPES-IRHLSKLKSLDISYCEWLHTLP 772 (966)
Q Consensus 717 ~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~~lp 772 (966)
..+..+..+..+ ++|+.|+|++|.++.+|.. +..+++|++|+|++|++.+..|
T Consensus 88 l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKL---TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCC---cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 654444434443 4899999999999988875 4779999999999998776544
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.3e-11 Score=122.57 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=76.1
Q ss_pred cccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccc--cccCCCCCCCccE
Q 046086 659 HIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPE--ISSSCNREGSTEV 736 (966)
Q Consensus 659 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~--~~~~~~~~~~L~~ 736 (966)
+|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+..+..+..+++|++|++++|.. +.+|. .+..++ +|+.
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~---~L~~ 117 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLK---SLTY 117 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCT---TCCE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCC---CCCE
Confidence 466666666666666 4677888888888888876654444457888888888888654 55665 444433 8888
Q ss_pred EEcCCCCccccchH----hhcCCCCCEEeecCCCC
Q 046086 737 LHLKGNNLERIPES----IRHLSKLKSLDISYCEW 767 (966)
Q Consensus 737 L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~n~~ 767 (966)
|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888888875 78888888888888864
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.23 E-value=1.4e-10 Score=121.64 Aligned_cols=200 Identities=14% Similarity=0.040 Sum_probs=120.6
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.+...+....... ...... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~ 88 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-RE 88 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HH
Confidence 3445679999999999999997542 2357899999999999999999987754331110000 000000 00
Q ss_pred HHHHHhCC----CCCCCChhhhHHHHHHH-----hcCCcEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEEeCchhh
Q 046086 208 LLSTLLND----RNVKNSPNIVLNFQSKR-----FTRKKVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIITTRDKHV 276 (966)
Q Consensus 208 ll~~l~~~----~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 276 (966)
+....... .............+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000000 00000000111111111 134678999999965 44566666555544567889999877642
Q ss_pred hhc--CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhh
Q 046086 277 LSN--CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFL 339 (966)
Q Consensus 277 ~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L 339 (966)
... ......+++++++.+|..+++...+....... ..+....++++++|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 11235789999999999999988774332211 13557889999999999888766443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=7.3e-11 Score=117.31 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=88.0
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCC
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSL 602 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~ 602 (966)
+.++++++.+..+| ..+.+|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|++|++++|.+.
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 45666777777777 4556788888888888877654 57788888888888876544443 677888888888887766
Q ss_pred ccccccccCCCcccEEeccCCCCCcccCCcc--CCCcccEEEecCCCCCCCC
Q 046086 603 METHSSIQYLNKLEVLDLRLCESLRSLPDTI--CSESLFELRLWGCLNLKNF 652 (966)
Q Consensus 603 ~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~ 652 (966)
+..+..+..+++|++|++++|.+. .+|... .+++|++|++++|......
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 655556777888888888877644 455433 5677777777777654433
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.2e-11 Score=119.78 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=40.5
Q ss_pred ccccceEeecCCCCCccccccccccc-ccceecccCCCCCCCCCCCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 541 RAENLVSLKLPGSNVEQLWDDVQNLV-NIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 541 ~l~~L~~L~L~~n~i~~l~~~~~~l~-~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
.+.+|++|++++|+++.+|. +..+. +|++|++++|.+.. ++.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34456666666666665533 33333 56666666665433 24455555555555555544332222234455555555
Q ss_pred ccCCC
Q 046086 620 LRLCE 624 (966)
Q Consensus 620 L~~n~ 624 (966)
+++|.
T Consensus 95 L~~N~ 99 (176)
T 1a9n_A 95 LTNNS 99 (176)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 55443
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=7.6e-11 Score=129.95 Aligned_cols=263 Identities=14% Similarity=0.091 Sum_probs=163.3
Q ss_pred CCCCceEEEecCCC-ccccccCCCCCCceeEEEecCCCCc--ccc-cccccceEeecCCCCCcccccc-ccc--------
Q 046086 498 MPKLRFLKFYGKNK-CMLSHFKGVPFTDVRYFEWHEFPLK--TLN-IRAENLVSLKLPGSNVEQLWDD-VQN-------- 564 (966)
Q Consensus 498 l~~L~~L~l~~n~~-~~l~~l~~~~~~~L~~L~l~~~~l~--~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~-------- 564 (966)
+.+|+.|.+.++-. ..+..+... ..+|+.|++++|.+. ..+ ..+..+..+.+..+ .+|.. |.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHh-hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccc
Confidence 45677888876410 011111111 356888888888777 222 22223444555544 34433 566
Q ss_pred ccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCC---CcccCCcc--CCCc
Q 046086 565 LVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCES---LRSLPDTI--CSES 637 (966)
Q Consensus 565 l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~---l~~lp~~~--~l~~ 637 (966)
+++|+.|+|.+ . +..++ .|.++++|+.|++.+|......+..|..+.++..+.+..+.. ...+.... ++.+
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88999999988 4 44455 388889999999988877766677788877777776654211 11122111 3445
Q ss_pred cc-EEEecCCCCCCCCccc------ccCcccEEeecccccccccccc-cCCCCCCEEeccCCCCcccccccccCCCCCcE
Q 046086 638 LF-ELRLWGCLNLKNFPEI------SSSHIHFLDLYECGIEDMPLSI-ECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKH 709 (966)
Q Consensus 638 L~-~L~L~~~~~l~~~p~~------~~~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 709 (966)
|+ .+.+..... ++.. ...++..+.+.++-...-...+ ..+++|+.|+|++|.+...-+..|.++++|+.
T Consensus 178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 55 444433221 2211 1125666766665322111112 24899999999999776666667999999999
Q ss_pred EEccCCCCCccccc-cccCCCCCCCcc-EEEcCCCCccccc-hHhhcCCCCCEEeecCCCCccccCCCC
Q 046086 710 IEISSCSNLKRFPE-ISSSCNREGSTE-VLHLKGNNLERIP-ESIRHLSKLKSLDISYCEWLHTLPELP 775 (966)
Q Consensus 710 L~Ls~~~~l~~~p~-~~~~~~~~~~L~-~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~n~~l~~lp~~~ 775 (966)
|+|.+| +..++. .+..|. +|+ .|+|.+ +++.|+ ..+.++++|+.|++++|.+...-+..+
T Consensus 255 l~l~~n--i~~I~~~aF~~~~---~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRVFSNCG---RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EECCTT--CCEECTTTTTTCT---TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred EECCcc--cceehHHHhhCCh---hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 999985 556654 355555 899 999998 888887 578999999999999887543333333
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=6.3e-10 Score=114.75 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=117.0
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|.....++|++..++++.+++... ..+.+.|+|++|+|||++|+.+++.+........++... .....+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRHK 88 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHHH
Confidence 445578999999999999999754 233489999999999999999999764433222222211 1111222222221
Q ss_pred HHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhhhc--CCcc
Q 046086 208 LLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVLSN--CLVD 283 (966)
Q Consensus 208 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~--~~~~ 283 (966)
+ ........ ....++.+||+||++.. ...+.+...+.....+.++|+||+....... ....
T Consensus 89 ~-~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 I-KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp H-HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred H-HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1 11111100 01356889999999764 3445555444444577889999887642211 1122
Q ss_pred eeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 284 QIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 284 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
..+++++++.++..+++.+.+...... -..+....+++.++|+|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 378999999999999998876432211 113457788899999998655443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=2.5e-10 Score=112.50 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=80.8
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEc
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHL 739 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~L 739 (966)
.+.+++++|.++.+|..+ .++|+.|+|++|.+.+..|..|.++++|++|+|++|...+..+..+..+ ++|+.|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l---~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL---TQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC---TTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC---CCCCEEEC
Confidence 567888888888888766 3788888888888877778888888888888888866543333333443 38888999
Q ss_pred CCCCccccch-HhhcCCCCCEEeecCCCCccc
Q 046086 740 KGNNLERIPE-SIRHLSKLKSLDISYCEWLHT 770 (966)
Q Consensus 740 s~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~ 770 (966)
++|+|+.+|. .+..+++|++|+|++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9998888876 478889999999999986543
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.3e-10 Score=112.10 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=80.7
Q ss_pred ccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccccc-ccCCCCCCCccEEE
Q 046086 660 IHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPEI-SSSCNREGSTEVLH 738 (966)
Q Consensus 660 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~-~~~~~~~~~L~~L~ 738 (966)
-+.+++++|.++.+|..+. ++|+.|+|++|.+.+..|..|.++++|+.|+|++|... .+|.. +..+ ++|+.|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l---~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKL---TQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC---TTCCEEE
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCc---chhhEEE
Confidence 4677888888888887664 78888888888887777888888888888888886544 45543 3443 4889999
Q ss_pred cCCCCccccchH-hhcCCCCCEEeecCCCCc
Q 046086 739 LKGNNLERIPES-IRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 739 Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l 768 (966)
|++|+|+.+|.. +..+++|++|+|++|++.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999988875 788999999999999864
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=2.4e-09 Score=120.75 Aligned_cols=210 Identities=11% Similarity=0.122 Sum_probs=115.7
Q ss_pred ccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCccccccccCCCcccEEec
Q 046086 543 ENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDL 620 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 620 (966)
.+|+.+.++. .++.++.. |.++++|+.++|++|++...... |. .++|+.+.|..+ ....-...|.++++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 3455555553 44444432 55555555555555543222222 33 355555555532 22223344555555555555
Q ss_pred cCCCCCcccCCcc-CCCcccEEEecCCCCCCCCccc-cc--CcccEEeecccccc-----ccc-ccccCCCCCCEEeccC
Q 046086 621 RLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEI-SS--SHIHFLDLYECGIE-----DMP-LSIECLSKLNSLDIHN 690 (966)
Q Consensus 621 ~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~-~~--~~L~~L~L~~n~i~-----~lp-~~~~~l~~L~~L~L~~ 690 (966)
..+ +..++... .-.+|+.+.+.++ +..++.. +. .+|+.+++.+|.+. .++ ..|.++++|+.+.|.+
T Consensus 234 ~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 532 33333332 2245555555332 2222221 11 15666666665544 454 3688889999999985
Q ss_pred CCCcccccccccCCCCCcEEEccCCCCCccccc-cccCCCCCCCccEEEcCCCCccccch-HhhcCC-CCCEEeecCCC
Q 046086 691 CTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLS-KLKSLDISYCE 766 (966)
Q Consensus 691 n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~-~L~~L~L~~n~ 766 (966)
+ +...-...|.++++|+.+.|..+ +..++. .+.. . +|+.|++++|.+..++. .+..++ +++.|.+..+.
T Consensus 310 ~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~---~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 310 S-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN---T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp T-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS---S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred c-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC---C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3 44444556888899999999653 445543 3333 3 78999999998887664 455664 78888887664
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=4.8e-09 Score=118.25 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=154.0
Q ss_pred ccceEeecCCCCCcccccc-cccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEe
Q 046086 543 ENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLD 619 (966)
Q Consensus 543 ~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 619 (966)
.+|+.+.++.+ ++.++.. |.+ .+|+.+.+..+ +..++ .|.++++|+.+++.+|.........|. ..+|+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 47888888766 7777665 555 47999999863 44444 389999999999998765544445555 68999999
Q ss_pred ccCCCCCcccCCcc--CCCcccEEEecCCCCCCCCccccc--CcccEEeeccccccccc-ccccCCCCCCEEeccCCCCc
Q 046086 620 LRLCESLRSLPDTI--CSESLFELRLWGCLNLKNFPEISS--SHIHFLDLYECGIEDMP-LSIECLSKLNSLDIHNCTRL 694 (966)
Q Consensus 620 L~~n~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~ 694 (966)
|..+ +..++... ++++|+.+.+.++ +..++.... .+|+.+.+ .+.++.++ ..|.++++|+.+.+.+|...
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 9844 66676655 7889999999875 344443322 27999999 55677775 46889999999999887543
Q ss_pred -----ccccccccCCCCCcEEEccCCCCCccccc-cccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCC
Q 046086 695 -----EYIKSSIFKLKSLKHIEISSCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 695 -----~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~ 767 (966)
..-+..|.++++|+.+.|.+ + +..++. .+..|. +|+.+.|..| ++.++. .+.++ +|+.|++.+|..
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~---~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNR---KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCC---SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCC---CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 23456788999999999985 3 555554 344555 8999999554 887764 67788 999999999975
Q ss_pred cc
Q 046086 768 LH 769 (966)
Q Consensus 768 l~ 769 (966)
..
T Consensus 358 ~~ 359 (401)
T 4fdw_A 358 PQ 359 (401)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=4.2e-12 Score=128.92 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc-CCCcccEEEecCCCCCCCCcccc-cCcccE
Q 046086 585 LSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEIS-SSHIHF 662 (966)
Q Consensus 585 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~-~~~L~~ 662 (966)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+ ..+|..+ .+++|++|++++|.... +|... ..+|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCE
Confidence 3344444444444443322 33 444455555555554432 2344333 23445555555443322 22111 115666
Q ss_pred Eeecccccccccc--cccCCCCCCEEeccCCCCccccccc----------ccCCCCCcEEE
Q 046086 663 LDLYECGIEDMPL--SIECLSKLNSLDIHNCTRLEYIKSS----------IFKLKSLKHIE 711 (966)
Q Consensus 663 L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~~~p~~----------l~~l~~L~~L~ 711 (966)
|++++|.++.+|. .+..+++|+.|++++|.+.+..|.. +..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666766554 5677777777777777665554432 55667777665
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.4e-12 Score=128.74 Aligned_cols=131 Identities=22% Similarity=0.185 Sum_probs=71.9
Q ss_pred ccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEecCCCCCCCCccccc--CcccEEeecccccccccccccCCCC
Q 046086 605 THSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLWGCLNLKNFPEISS--SHIHFLDLYECGIEDMPLSIECLSK 682 (966)
Q Consensus 605 ~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp~~~~~l~~ 682 (966)
+|..+..+++|++|++++|.+.+ +|....+++|++|++++|... .+|.... .+|+.|++++|.++.+| .+..+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 44578888999999999886443 662226666666666666433 3343222 14555555555555544 3444455
Q ss_pred CCEEeccCCCCccccc-ccccCCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCcccc-c----------hH
Q 046086 683 LNSLDIHNCTRLEYIK-SSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLERI-P----------ES 750 (966)
Q Consensus 683 L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~l-p----------~~ 750 (966)
|+.|++++|.+....+ ..+..++ +|+.|++++|.++.. | ..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~---------------------------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALD---------------------------KLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTT---------------------------TCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCC---------------------------CCCEEEecCCccccccccccchHHHHHHH
Confidence 5555555543332111 2333334 555555555555432 2 13
Q ss_pred hhcCCCCCEEeecCCCC
Q 046086 751 IRHLSKLKSLDISYCEW 767 (966)
Q Consensus 751 i~~l~~L~~L~L~~n~~ 767 (966)
+..+++|+.|+ +|++
T Consensus 170 ~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHCSSCSEEC--CGGG
T ss_pred HHhCCCcEEEC--Cccc
Confidence 67888888887 4443
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=9.1e-10 Score=108.46 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=46.6
Q ss_pred EEEecCCCCcccc-cccccceEeecCCCCCccc-ccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCCc
Q 046086 527 YFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSLM 603 (966)
Q Consensus 527 ~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~~ 603 (966)
.++++++.++.+| ..+.+|++|+|++|+|+.+ |..+.++++|++|+|++|++....+. |.++++|++|+|++|.+..
T Consensus 13 ~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence 3444445555555 2334555555555555544 22345555555555555544333332 3455555555555544443
Q ss_pred cccccccCCCcccEEeccCCC
Q 046086 604 ETHSSIQYLNKLEVLDLRLCE 624 (966)
Q Consensus 604 ~~~~~l~~l~~L~~L~L~~n~ 624 (966)
..+..+..+++|++|+|++|.
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 93 IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhcCCCCCCEEEeCCCC
Confidence 333344455555555555444
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=1.9e-09 Score=118.22 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=114.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-Cc-eEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EG-SYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~l~ 205 (966)
|.....++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.+.... .. .+++. . ....+...+.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~~i~ 90 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDDRGIDVVR 90 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSCCSHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccccChHHHH
Confidence 4445779999999999999987542 33489999999999999999999864322 21 22222 1 1111222221
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHh-cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhh-hc-C
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVL-SN-C 280 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~ 280 (966)
++...+.... ..+ .+++.++|+||++.. ...+.+...+....+++++|+||+...-. .. .
T Consensus 91 -~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 91 -NQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp -THHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 1111111000 011 345789999999763 34444444444445678888888765321 11 1
Q ss_pred CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhHh
Q 046086 281 LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVLG 336 (966)
Q Consensus 281 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~g 336 (966)
.....+++++++.++..+++...+...... -..+....+++.++|.|. |+..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223488999999999999998876322211 113457889999999995 444443
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.5e-09 Score=107.37 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=52.8
Q ss_pred eEEEecCCCCcccc-cccccceEeecCCCCCccc-ccccccccccceecccCCCCCCCCCC-CCCCccCcEEeccCccCC
Q 046086 526 RYFEWHEFPLKTLN-IRAENLVSLKLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLPD-LSQARNLERLKLDGCSSL 602 (966)
Q Consensus 526 ~~L~l~~~~l~~lp-~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~~~~~ 602 (966)
+.++++++.+..+| ..+.+|++|+|++|+|+.+ |..+.++++|++|+|++|++....+. |.++++|++|+|++|.+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 34555555555555 3345566666666666555 33455566666666666654433332 455556666666555544
Q ss_pred ccccccccCCCcccEEeccCCC
Q 046086 603 METHSSIQYLNKLEVLDLRLCE 624 (966)
Q Consensus 603 ~~~~~~l~~l~~L~~L~L~~n~ 624 (966)
...+..+..+++|++|+|++|.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSC
T ss_pred eeCHHHhccccCCCEEEeCCCC
Confidence 3333335555555555555554
No 161
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=98.94 E-value=1.4e-10 Score=113.68 Aligned_cols=57 Identities=26% Similarity=0.457 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhh-hcCCCEEEeEeeec
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECK-HDYGQIVIPVFYGV 57 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~-~~~~~~v~pify~v 57 (966)
|+.|.++|.+||++|+++|+|+|++|++|.||+.|+..++.+. ++++++||||||+-
T Consensus 77 G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp TSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSC
T ss_pred CccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 8899999999999999999999999999999999999999754 56678899999984
No 162
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=98.94 E-value=7.6e-11 Score=112.53 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=54.5
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHH-hhhcCCCEEEeEeee-cccCcc
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYASSRWCLDELLKILE-CKHDYGQIVIPVFYG-VDPSHV 62 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~-~~~~~~~~v~pify~-vdps~v 62 (966)
|+.|.++|.+||++|+++|||+|++|+.|.||+.|+..++. +.+++++.||||||+ +++..+
T Consensus 47 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred chhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 88999999999999999999999999999999999999996 456677889999996 455433
No 163
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=98.89 E-value=8e-10 Score=106.39 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCcchHHHHHHHHhccEEEEEecCCcC-ChhhhHHHHHHHHHhh-hcCCCEEEeEeeecccC
Q 046086 1 GDEISESLLDAIEASTISIIIFSERYA-SSRWCLDELLKILECK-HDYGQIVIPVFYGVDPS 60 (966)
Q Consensus 1 g~~i~~~l~~ai~~s~~~v~v~S~~y~-~S~wcl~el~~i~~~~-~~~~~~v~pify~vdps 60 (966)
|+.|.++|.+||++|+.+|||+|++|+ .|.||+.|+..++.|. +++++.||||||.-.|.
T Consensus 54 G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 54 TGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp CTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred ccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 889999999999999999999999996 9999999999999986 66788999999986665
No 164
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=98.87 E-value=1.5e-10 Score=111.73 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCcchHHHHHHHH-hccEEEEEecCCcCChhhhHHHHHHHHHhh-hcCCCEEEeEeeeccc
Q 046086 1 GDEISESLLDAIE-ASTISIIIFSERYASSRWCLDELLKILECK-HDYGQIVIPVFYGVDP 59 (966)
Q Consensus 1 g~~i~~~l~~ai~-~s~~~v~v~S~~y~~S~wcl~el~~i~~~~-~~~~~~v~pify~vdp 59 (966)
|+.|.++|.+||+ +|+++|+|+|++|++|.||+.|+..++++. +.++++||||||+.-+
T Consensus 57 G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 57 GTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp SCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred CCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 7888999999999 799999999999999999999999999985 4456789999998754
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.1e-08 Score=112.40 Aligned_cols=188 Identities=19% Similarity=0.179 Sum_probs=115.3
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE-eehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH-NVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~ 206 (966)
|....+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. +... ..+...+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ 95 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD---ERGINVIRE 95 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC---HHHHHTTHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc---cCchHHHHH
Confidence 445567999999999999998764 3334899999999999999999998643321111221 1110 000111111
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhh-hcC-Cc
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVL-SNC-LV 282 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~ 282 (966)
.+ ....... ....+++.++|+||++.. +..+.+...+.....+.++|+||....-. ... ..
T Consensus 96 ~~-~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 96 KV-KEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HH-HHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HH-HHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11 1100000 001256789999999764 44555655554456778899988765321 110 11
Q ss_pred ceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhh
Q 046086 283 DQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGS 337 (966)
Q Consensus 283 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~ 337 (966)
...+++++++.++..+++...+...... --.+....+++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2478999999999999998876433221 1235678889999999986554433
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=8.1e-09 Score=114.54 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=36.5
Q ss_pred EEecCCCCCCCCcccccC--cccEEeecc-ccccccc-ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCC
Q 046086 641 LRLWGCLNLKNFPEISSS--HIHFLDLYE-CGIEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSC 715 (966)
Q Consensus 641 L~L~~~~~l~~~p~~~~~--~L~~L~L~~-n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~ 715 (966)
+++++++.+..+|. +.. +|+.|+|++ |.++.+| ..|++|++|+.|+|++|.+.+..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 34444423344444 322 455555553 5555544 23555555555555555554444445555555555555553
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=4.7e-10 Score=125.26 Aligned_cols=41 Identities=5% Similarity=0.149 Sum_probs=18.0
Q ss_pred cccCCCCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCC
Q 046086 676 SIECLSKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCS 716 (966)
Q Consensus 676 ~~~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~ 716 (966)
.+..+++|++|+|++|.+.. .++..+..+++|++|+|++|.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 33445555555555554322 123333344444444444443
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=1.8e-07 Score=102.46 Aligned_cols=259 Identities=14% Similarity=0.084 Sum_probs=147.6
Q ss_pred cCCCCccccccchHHHHHHhhhcC---CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTG---SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...+.++|++..++++...+... ....+.|.|+|++|+|||++|+.+++.....| .++. ... ......+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~---~~~~~~l 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA---IEKPGDL 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT---CCSHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc---cCChHHH
Confidence 345578999999999998887521 12345789999999999999999998774332 2222 111 1111111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCC------------------CCC
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWL------------------ASG 264 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~------------------~~g 264 (966)
. ..+...+ .++.+|+||+++... ..+.+...+... .++
T Consensus 81 ~---------------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 A---------------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H---------------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred H---------------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 1111111 345689999997643 333333221111 134
Q ss_pred cEEEEEeCchhhhhc-C--CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhhcC
Q 046086 265 SRIIITTRDKHVLSN-C--LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFLFG 341 (966)
Q Consensus 265 s~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L~~ 341 (966)
.++|.||........ . .....+.+++++.+|..+++...+......- ..+....++++++|+|-.+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 567777765432211 1 2235789999999999999988774332211 2356788999999999877766544321
Q ss_pred ---------CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccCC--CCHHHHHHHHhHcCCCh---
Q 046086 342 ---------RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLVG--EDRDQVMRFLNSCGFFA--- 407 (966)
Q Consensus 342 ---------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~--- 407 (966)
.+.+....++.. +...+..+++.++..+..++....+ .....+.+.+ |...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl 281 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTL 281 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHH
Confidence 123333333332 2233556788888887766644333 3455555543 3221
Q ss_pred hcchhh-hhcCcceeEecCEEEecHH
Q 046086 408 EVGLSV-RVDKSLITIDYNTIRMHDF 432 (966)
Q Consensus 408 ~~~l~~-L~~~sLi~~~~~~~~mHdl 432 (966)
...++. +++.++|........+-+.
T Consensus 282 ~~~l~~~~i~~~li~~~~~g~~~~~~ 307 (324)
T 1hqc_A 282 EEVHEPYLIRQGLLKRTPRGRVPTEL 307 (324)
T ss_dssp HHHTHHHHHHTTSEEEETTEEEECHH
T ss_pred HHHHhHHHHHhcchhcCCccceecHH
Confidence 111333 6777888766444444443
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=1.7e-09 Score=120.74 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=78.1
Q ss_pred cccEEeecccccccc-----cccc-cCCCCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCCCCc----ccccc
Q 046086 659 HIHFLDLYECGIEDM-----PLSI-ECLSKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCSNLK----RFPEI 724 (966)
Q Consensus 659 ~L~~L~L~~n~i~~l-----p~~~-~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~----~~p~~ 724 (966)
+|+.|+|++|.++.. ...+ ...++|+.|+|++|.+.. .++..+..+++|++|+|++|.... .++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 466777777776532 2223 356889999999998643 355666789999999999987432 22333
Q ss_pred ccCCCCCCCccEEEcCCCCccc-----cchHhhcCCCCCEEeecCCCCcc
Q 046086 725 SSSCNREGSTEVLHLKGNNLER-----IPESIRHLSKLKSLDISYCEWLH 769 (966)
Q Consensus 725 ~~~~~~~~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~n~~l~ 769 (966)
+..+. +|+.|+|++|.|+. ++..+...++|++|+|++|++..
T Consensus 207 L~~~~---~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNR---QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCS---CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCC---CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 44433 89999999999983 45567788999999999998653
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.73 E-value=4.5e-07 Score=102.28 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=129.3
Q ss_pred eeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCCCCCcccc
Q 046086 487 EIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW 559 (966)
Q Consensus 487 ~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~ 559 (966)
...|...+|.++.+|+.+.+.. .+..+....| .+|+.+++..+ ++.++ ..+.+|+.+.++.+ +..+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~----~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS----TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCC----CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence 4567888899999999988864 3456666665 56777766543 45554 34455665555433 33332
Q ss_pred cc-cccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCcc--C
Q 046086 560 DD-VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTI--C 634 (966)
Q Consensus 560 ~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~--~ 634 (966)
.. |.++..+......... .+. .|.++++|+.+.+.++ ........|.++++|+.+++..+ +..++... +
T Consensus 133 ~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~ 206 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE 206 (394)
T ss_dssp TTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred ceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence 22 3333322222222111 112 2666666777666543 22223345666666666666543 33343332 4
Q ss_pred CCcccEEEecCCCCCCCCcccccCcccEEeeccccccccc-ccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEcc
Q 046086 635 SESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEIS 713 (966)
Q Consensus 635 l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls 713 (966)
...|+.+.+..+...-.-......+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ........+..++.|+.+.+.
T Consensus 207 ~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 207 CILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEEC
T ss_pred ccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccC
Confidence 4455555444332110000011114555555432 23332 24556667777777654 233333445666666666665
Q ss_pred CCCCCccccc-cccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeec
Q 046086 714 SCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDIS 763 (966)
Q Consensus 714 ~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~ 763 (966)
.. .++. .+..|. +|+.+.+..+ ++.|+. .+.++++|+.++|.
T Consensus 285 ~~----~i~~~~F~~~~---~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 285 SV----IVPEKTFYGCS---SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp SS----EECTTTTTTCT---TCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ce----eeccccccccc---cccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 42 1222 222333 6777776543 555553 45667777777664
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=1.2e-08 Score=112.91 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=74.5
Q ss_pred CCcccEEEecCCCCCCCCcccccCcccEEeecccccccc-cccc--cCCCCCCEEeccCC--CCcc-----cccccc--c
Q 046086 635 SESLFELRLWGCLNLKNFPEISSSHIHFLDLYECGIEDM-PLSI--ECLSKLNSLDIHNC--TRLE-----YIKSSI--F 702 (966)
Q Consensus 635 l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~--~~l~~L~~L~L~~n--~~~~-----~~p~~l--~ 702 (966)
+++|+.|.|++|... .++.....+|+.|+|..+.+..- ...+ ..+++|+.|+|+.+ ...+ .+...+ .
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 345555555554221 12222233566666666655421 1122 36788888887532 1111 111222 2
Q ss_pred CCCCCcEEEccCCCCCccccccccCCCCCCCccEEEcCCCCccc-----cchHhhcCCCCCEEeecCCCCc
Q 046086 703 KLKSLKHIEISSCSNLKRFPEISSSCNREGSTEVLHLKGNNLER-----IPESIRHLSKLKSLDISYCEWL 768 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~n~~l 768 (966)
.+|+|++|+|++|......+..+...+.+++|+.|+|+.|.++. ++..+.++++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 47888888888876554333333322344588888888888873 4555677888888888888654
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=3.7e-07 Score=99.63 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=113.8
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc-cCCc-eEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEG-SYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~~~~~~~~l~ 205 (966)
|....+++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. ... ..+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~---~~~----- 81 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASD---ERG----- 81 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTS---TTC-----
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-Ccc---ccC-----
Confidence 445577999999999999998653 3334899999999999999999997632 2211 12222 111 000
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHH--h-cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhhh-hc
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKR--F-TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHVL-SN 279 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~--L-~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~ 279 (966)
.............. + .+++.++|+|+++.. +..+.+...+....++.++|+||....-. ..
T Consensus 82 -------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 82 -------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp -------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred -------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 00001111111101 1 256789999999754 44566666666656778888888765321 11
Q ss_pred -CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 280 -CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 280 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
......+++.+++.++..+++...+...... -..+....+++.++|.+..+...
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1123478999999999999998776433221 12345778889999998755443
No 173
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=9.4e-07 Score=99.65 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=135.9
Q ss_pred ccceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc---ccccc
Q 046086 471 TTAIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN---IRAEN 544 (966)
Q Consensus 471 ~~~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp---~~l~~ 544 (966)
...++.+.+. .. ...+...+|.++++|+.+.+.++ +..++...+ ..|+.+.+..+ +..+. +.-..
T Consensus 70 c~~L~~i~lp--~~--i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 70 CRKVTEIKIP--ST--VREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp CTTEEEEECC--TT--CCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred CCCceEEEeC--CC--ccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 3455655553 21 45788999999999999999754 355555555 45554443322 33333 11112
Q ss_pred ceEeecCCCCCcccc-cccccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEecc
Q 046086 545 LVSLKLPGSNVEQLW-DDVQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLR 621 (966)
Q Consensus 545 L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 621 (966)
+....+. +.+..+. ..|.++.+|+.+.+..+. ..++ .|.++.+|+.+.+..+ ........+.++..|+.+.+.
T Consensus 141 ~~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIP-EGVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECC-TTCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccC-ccccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 2222222 1222232 236677777777776552 2333 3677777777777653 222333456667777766665
Q ss_pred CCCCCcccCCcc-CCCcccEEEecCCCCCCCCccc---ccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccc
Q 046086 622 LCESLRSLPDTI-CSESLFELRLWGCLNLKNFPEI---SSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYI 697 (966)
Q Consensus 622 ~n~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~---~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~ 697 (966)
.+. ..+.... ...+|+.+.+.... ..+... ....|+.+.+..+...--...+..+..|+.+.+..+.+ .
T Consensus 217 ~~~--~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~ 289 (394)
T 4fs7_A 217 NSL--YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---P 289 (394)
T ss_dssp TTC--CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---C
T ss_pred CCc--eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcceeeccccccccccceeccCceee---c
Confidence 332 1222222 44556666664321 111111 11146666665543332233455566666665554321 1
Q ss_pred cccccCCCCCcEEEccCCCCCccccc-cccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecC
Q 046086 698 KSSIFKLKSLKHIEISSCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISY 764 (966)
Q Consensus 698 p~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~ 764 (966)
...+..+.+|+.+.+.++ +..+++ .+..|. +|+.++|.. +++.|+. .+.++++|+.+++..
T Consensus 290 ~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~---~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCT---SLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTTTTCTTCCEEEECTT--CCEECTTTTTTCT---TCCEECCCT-TCCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccccccccc--cceechhhhcCCC---CCCEEEeCC-cccEEhHHhccCCCCCCEEEECc
Confidence 123455666666666542 333332 233333 566666643 3555543 455666666666543
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=6.5e-08 Score=107.19 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=76.2
Q ss_pred eEeecCCC-CCcccccccccccccceecccC-CCCCCCCC-CCCCCccCcEEeccCccCCccccccccCCCcccEEeccC
Q 046086 546 VSLKLPGS-NVEQLWDDVQNLVNIKEIDLHG-SKQLSKLP-DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRL 622 (966)
Q Consensus 546 ~~L~L~~n-~i~~l~~~~~~l~~L~~L~Ls~-n~~~~~~p-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 622 (966)
..++++++ +++.+|. +..+++|++|+|++ |.+....+ .|.++++|+.|+|++|.+.+..|..|.+|++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34677777 8888888 88888999999986 77555544 388899999999999887777777888999999999998
Q ss_pred CCCCcccCCcc-CCCcccEEEecCCCC
Q 046086 623 CESLRSLPDTI-CSESLFELRLWGCLN 648 (966)
Q Consensus 623 n~~l~~lp~~~-~l~~L~~L~L~~~~~ 648 (966)
|.+. .+|... ...+|+.|+|.+|..
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCCc
Confidence 8654 455433 333377777777654
No 175
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=2.7e-07 Score=103.30 Aligned_cols=196 Identities=15% Similarity=0.093 Sum_probs=113.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|.....++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ... ...... ...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-------~~~~~~-~~~ 81 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-------CGVCDN-CRE 81 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-------CSSSHH-HHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-------CcccHH-HHH
Confidence 3345679999999999999987542 235788999999999999999998764322100 000 000000 000
Q ss_pred HHHH----HhC-CCCCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 208 LLST----LLN-DRNVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 208 ll~~----l~~-~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
+... +.. ........+.... +.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHH-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HhccCCCceEEecccccCCHHHHHH-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000 000 0000001111112 22222 346789999999653 445555555444456677888876553
Q ss_pred hh-hc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 276 VL-SN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 276 v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
-. .. ......+++.+++.++..+++...+-..... -..+....+++.++|.|..+..+.
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 21 11 1123578999999999999998765322111 113457789999999998776554
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.58 E-value=8.5e-07 Score=95.13 Aligned_cols=181 Identities=19% Similarity=0.227 Sum_probs=105.8
Q ss_pred cCCCCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 128 ENDNKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
....+.++|++..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| +.+. .....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHH
Confidence 345678999999999998887431 13345699999999999999999998864432 1121 11110
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh----------------HHHHHHhcccC-
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL----------------KQIEFLIGRID- 259 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~- 259 (966)
.. ..... .......+......++.+|+||+++.. ..+..+.....
T Consensus 89 ~~-~~~~~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 KK-FIGEG-----------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CC-STTHH-----------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred Hh-ccchH-----------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 00 00000 011112222333456789999999653 12333333222
Q ss_pred -CCCCCcEEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCCCC-CccHHHHHHHHHHHcCC-Cchh
Q 046086 260 -WLASGSRIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGEDDP-NASYKELTQEAVKYAKG-VPLA 331 (966)
Q Consensus 260 -~~~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~iv~~~~G-~PLa 331 (966)
....+..||.||....... .......+.++.++.++..+++...+...... ..+ ...+++.+.| .|-.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHH
Confidence 1234567788887654332 11344578999999999999998887443222 222 4556667776 3434
Q ss_pred HHh
Q 046086 332 LKV 334 (966)
Q Consensus 332 l~~ 334 (966)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=3.2e-07 Score=91.74 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=42.7
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.....++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999865 33456889999999999999999997643
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.52 E-value=3e-07 Score=95.82 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=101.2
Q ss_pred CCCcccccc---chHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHH
Q 046086 130 DNKELVGVE---CPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 130 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
..++|+|.+ ..++.+..+...+ ..+.+.|+|++|+||||+|+.+++........+.|+... ..... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-~~~~~--~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-IHASI--S----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-GGGGS--C-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-HHHHH--H-----
Confidence 446788743 4556666665432 456799999999999999999999876654455566421 11100 0
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--H--HHHHhcccCCC-CCC-cEEEEEeCchhh----
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--Q--IEFLIGRIDWL-ASG-SRIIITTRDKHV---- 276 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~--~~~l~~~~~~~-~~g-s~IIiTTR~~~v---- 276 (966)
.... +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...-
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 345689999996532 1 22222221110 122 258888774321
Q ss_pred -----hhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 277 -----LSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 277 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
...+.....+++++++.++..+++...+...... --.+....++++++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111122688999999999999998876422211 123567788899999886655443
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.51 E-value=2e-06 Score=95.23 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHH
Q 046086 106 RPESKLIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAV 175 (966)
Q Consensus 106 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v 175 (966)
..+...++.+.+++..+. ++.....++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+++
T Consensus 61 ~~~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 61 NLEPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp TSCHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred cCChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 456677777777776543 334557799999999999988742 1123567999999999999999999
Q ss_pred HHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-------
Q 046086 176 FNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL------- 248 (966)
Q Consensus 176 ~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------- 248 (966)
++.....| +.+. ........ .... .......+......++.+|+||+++..
T Consensus 138 a~~~~~~~---~~i~-~~~l~~~~-~g~~-----------------~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 138 ASQSGATF---FSIS-ASSLTSKW-VGEG-----------------EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp HHHTTCEE---EEEE-GGGGCCSS-TTHH-----------------HHHHHHHHHHHHHTCSEEEEEETHHHHTBC----
T ss_pred HHHcCCeE---EEEe-hHHhhccc-cchH-----------------HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC
Confidence 98764322 2222 21111100 0000 001111122222356789999998432
Q ss_pred ------HHHHHHhcccC----CCCCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHH
Q 046086 249 ------KQIEFLIGRID----WLASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYK 315 (966)
Q Consensus 249 ------~~~~~l~~~~~----~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 315 (966)
.....++..+. ....+..||.||.....+.. ......+.++..+.++..+++...+-.....- ..
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~ 273 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SE 273 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cH
Confidence 11223332222 11234556667765432211 13345778888999999998887763322111 12
Q ss_pred HHHHHHHHHcCC-CchhHHhHhh
Q 046086 316 ELTQEAVKYAKG-VPLALKVLGS 337 (966)
Q Consensus 316 ~~~~~iv~~~~G-~PLal~~~g~ 337 (966)
+....+++.+.| .+-.|..+..
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778888888 4455555543
No 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.51 E-value=7.6e-07 Score=95.58 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred ccccccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhccCC-----c--eEEEEeehhhhccCCHHH
Q 046086 133 ELVGVECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE-----G--SYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~--~~~~~~~~~~~~~~~~~~ 203 (966)
.+.|||+++++|...|.. .....+.+.|+|++|.|||++|+.+++++..... . .+++.+. .......
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHH
Confidence 489999999999988763 2345677899999999999999999998754321 1 2334322 2233445
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHHHh---cCCcEEEEEecCCChHH---HHHHhcccCCCCCCc--EEEEEeCchh
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSKRF---TRKKVLIVFDDVTHLKQ---IEFLIGRIDWLASGS--RIIITTRDKH 275 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~---~~~l~~~~~~~~~gs--~IIiTTR~~~ 275 (966)
+...++.++.+..............+.+.+ .++++++|||+++...+ +-.+..... ...+ .||.++.+.+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCcc
Confidence 666677777544322222222223222322 46789999999977532 333322110 1233 3344444432
Q ss_pred h----h-----hcCCcceeEeeccCChhhHHHHHhhhh
Q 046086 276 V----L-----SNCLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 276 v----~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
. + ..+. ...+.+++++.+|-.+++.+++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 1111 2478899999999999998876
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.50 E-value=5e-06 Score=91.47 Aligned_cols=256 Identities=13% Similarity=0.106 Sum_probs=142.2
Q ss_pred cCCCCccccccchHHHHHHhhhcC---CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTG---SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|.....++|++..++++..++... ....+.|.|+|++|+|||++|+.++++....| +.+. ... ......+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~---~~~~~~~ 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM---IEKSGDL 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG---CCSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh---ccchhHH
Confidence 345678999999999999988642 23445689999999999999999998765443 2222 111 1111111
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCC------------------CCC
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWL------------------ASG 264 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~g 264 (966)
...+.. ..+..+|+||+++.. .....+...+... .++
T Consensus 98 ---------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 98 ---------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111111 235568999999754 2233333222111 123
Q ss_pred cEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHhhhh--
Q 046086 265 SRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLGSFL-- 339 (966)
Q Consensus 265 s~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g~~L-- 339 (966)
.++|.||........ ...+..+.+++++.++..+++...+-.... .-..+....+++.+.|+|-.+..+...+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567766665432211 123468999999999999999877633221 1123557788889999995554433221
Q ss_pred ----cC---CCHHHHHHHHHHHhcCCCchHHHHHHHhhcCCChhhHhHhhhcccccCCC--CHHHHHHHHhHcCCChhcc
Q 046086 340 ----FG---RRKEEWKSAMKKMEIVPHMEIQEVLKISYDGLDDHEQGIFLDISCFLVGE--DRDQVMRFLNSCGFFAEVG 410 (966)
Q Consensus 340 ----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~ 410 (966)
.+ .+.+....++.. +..+...++..+++.+..++-. .+. ....+...+....-.....
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred HHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHH
Confidence 11 122222222222 2333445666666666666554 332 3555555442111111223
Q ss_pred hh-hhhcCcceeEe-cCEEE
Q 046086 411 LS-VRVDKSLITID-YNTIR 428 (966)
Q Consensus 411 l~-~L~~~sLi~~~-~~~~~ 428 (966)
++ .|++.++|... .+++.
T Consensus 300 l~~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 300 IEPYLLANGYIERTAKGRIA 319 (338)
T ss_dssp THHHHHHTTSEEEETTEEEE
T ss_pred HhHHHHHcCceecCCCcccc
Confidence 44 78888998776 34443
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=2e-06 Score=100.15 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=105.8
Q ss_pred cCCCCccccccchHHHHHHhhhcC---------------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEee
Q 046086 128 ENDNKELVGVECPINEIESLLRTG---------------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNV 192 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 192 (966)
|.....++|++..++++.+++... .+..+.+.|+|++|+||||+|+.+++.+. +. .+.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C
Confidence 445678999999999999998641 01347899999999999999999999873 11 12222 1
Q ss_pred hhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-----HHHHHhcccCCCCCCcEE
Q 046086 193 QEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-----QIEFLIGRIDWLASGSRI 267 (966)
Q Consensus 193 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~I 267 (966)
+..... .+....+...........-...... .....+++.+||+|+|+... .+..+...+. ..+..|
T Consensus 111 ---s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~i 182 (516)
T 1sxj_A 111 ---SDVRSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPL 182 (516)
T ss_dssp ---TSCCCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCE
T ss_pred ---CCcchH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCE
Confidence 111111 1222221111111000000000000 00123577899999996431 1233332221 134456
Q ss_pred EEEeCchh---hhhcCCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 268 IITTRDKH---VLSNCLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 268 IiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
|+++.+.. +.........+++++++.++..+.+...+..... ..+ +....|++.++|.+- |+..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 66655432 2222233457899999999999988776643221 121 346788899999554 44444
No 183
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1e-05 Score=89.44 Aligned_cols=196 Identities=11% Similarity=0.107 Sum_probs=112.4
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc--cCCceEEEEeehhhhccCCHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR--HFEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
|.....++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +...+...+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~~~~~ 107 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIVR 107 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHHT
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccchHHHH
Confidence 4456789999999999999986542 233899999999999999999987642 12222211111 1112222222
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchhh-hhcC-C
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKHV-LSNC-L 281 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v-~~~~-~ 281 (966)
+.+ .......... .... .....-..++-+|++|+++.. .....+...+.......++|++|....- .... .
T Consensus 108 ~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKV-KNFARLTVSK-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THH-HHHHHSCCCC-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHH-HHHhhhcccc-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 221 1111110000 0000 001111235568999998653 3344444444333456778887765531 1111 1
Q ss_pred cceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhH
Q 046086 282 VDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVL 335 (966)
Q Consensus 282 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~ 335 (966)
....+++++++.++..+.+...+......- ..+....++++++|.|-.+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 124788999999999999988764322211 1356788999999999764443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=8.7e-08 Score=105.96 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=38.9
Q ss_pred cccccccccccceecccCCCCCCCCCCCCCCccCcEEeccCccCCcccccccc--CCCcccEEecc
Q 046086 558 LWDDVQNLVNIKEIDLHGSKQLSKLPDLSQARNLERLKLDGCSSLMETHSSIQ--YLNKLEVLDLR 621 (966)
Q Consensus 558 l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~L~ 621 (966)
+..-+..+++|+.|+|++|... .++.+. +++|++|+|..|.+.......+. .+++|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344566778888888777322 233343 77888888877765443333333 67888888775
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=4.5e-06 Score=88.15 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=101.2
Q ss_pred CCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 131 NKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
.++++|.+..++++.+++.. +....+.+.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 45789999888888776531 112345688999999999999999999775332 2222 111100000
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-----------------HHHHHHhcccCCC--
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-----------------KQIEFLIGRIDWL-- 261 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~~~~~-- 261 (966)
..........+.......+.+|+||+++.. ..+..++..+...
T Consensus 81 ------------------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 ------------------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000011122223333456789999999764 1123333322221
Q ss_pred CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 262 ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
..+..||.||.....+.. ...+..+.++..+.++..+++..++..... ..........+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 235567777766543221 123467889999999999999887643222 11112234677888888754 44433
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=1.4e-05 Score=90.04 Aligned_cols=103 Identities=12% Similarity=0.238 Sum_probs=45.8
Q ss_pred eecchhhcCCC-CCceEEEecCCCccccccCCCCC---CceeEEEecCCC---Ccccc----cccccceEeecCCCCCcc
Q 046086 489 RINRSTFSKMP-KLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFP---LKTLN----IRAENLVSLKLPGSNVEQ 557 (966)
Q Consensus 489 ~~~~~~f~~l~-~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~---l~~lp----~~l~~L~~L~L~~n~i~~ 557 (966)
.|...+|.+++ .|+.+.+-. .+..+....| .+|+.+.+..+. ++.++ ..+.+|+.+.+..+ ++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~----svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPD----TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECT----TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred EcCHhhccCCCCcCEEEEECC----CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 34444555442 355555533 1233444433 445555544332 33333 22344555544432 334
Q ss_pred cccc-cccccccceecccCCCCCCCCC--CCCCCccCcEEeccC
Q 046086 558 LWDD-VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDG 598 (966)
Q Consensus 558 l~~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~ 598 (966)
++.. +..+.+|+.+.+..+ ...++ .|..+.+|+.+.+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred ehhhhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 4332 455566666665433 22222 255555566555544
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=6.7e-06 Score=89.68 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=105.6
Q ss_pred ccCCCCccccccchHHHHHHhhh----------cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 127 FENDNKELVGVECPINEIESLLR----------TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
+...-..++|.+..+++|.+.+. ......+-|.|+|++|+|||+||+++++.....| +.+. ....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l- 87 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDL- 87 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHH-
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHH-
Confidence 34455789999999999998873 1112245689999999999999999999864432 1221 1111
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccC---C
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRID---W 260 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~---~ 260 (966)
..... ..........+......++.+|+||+++... ....++..+. .
T Consensus 88 ------------~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 88 ------------VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ------------HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ------------hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 00000 0000111122222234567899999996431 1233332222 2
Q ss_pred CCCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHhH
Q 046086 261 LASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV-PLALKVL 335 (966)
Q Consensus 261 ~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~-PLal~~~ 335 (966)
...+..||.||.....+.. ......+.++..+.++..+++..++........ ......+++++.|. +-.|..+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 2445666767776533221 123457788889999999999888744322111 23456777888773 4344433
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.37 E-value=5.9e-06 Score=87.83 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=92.1
Q ss_pred CccccccchHHHHHH-------hhhc-CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHH
Q 046086 132 KELVGVECPINEIES-------LLRT-GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAH 203 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 203 (966)
..++|.+..++++.. .+.. +....+.+.|+|++|+|||++|+.+++.....| +.+... ..........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~-~~~~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSP-DKMIGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECG-GGCTTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCH-HHhcCCchHH
Confidence 457788777666655 2221 234567899999999999999999999754322 222211 1000000000
Q ss_pred HHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh------------HHHHHHhcccCC---CCCCcEEE
Q 046086 204 LRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL------------KQIEFLIGRIDW---LASGSRII 268 (966)
Q Consensus 204 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gs~II 268 (966)
.. ......+......++.+|+||+++.. ..++.+...+.. .+....||
T Consensus 109 ~~-----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 109 KC-----------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HH-----------------HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HH-----------------HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00 01112222333456789999998643 123333332222 23344567
Q ss_pred EEeCchhhhhcC----CcceeEeeccCCh-hhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC
Q 046086 269 ITTRDKHVLSNC----LVDQIYEVKELLD-VDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 269 iTTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~ 328 (966)
.||.....+... .....+++++++. ++..+++.... . .. .+....+++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-SC---HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-CC---HHHHHHHHHHhcCC
Confidence 788877543321 2245788999988 55555554421 1 11 24467788888874
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.37 E-value=1.8e-06 Score=98.32 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCccc-cccchH--HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCc--eEEEEeehhhhccCCHHHHH
Q 046086 131 NKELV-GVECPI--NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEG--SYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 131 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~ 205 (966)
.+.|| |....+ ..+......... ...+.|+|++|+||||||+.+++.+...+.. .+++.. ..+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHH
Confidence 34566 655443 233333333222 5679999999999999999999988666533 334431 1122
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----HHHHHhcccCC-CCCCcEEEEEeCchh-----
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----QIEFLIGRIDW-LASGSRIIITTRDKH----- 275 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~----- 275 (966)
.++...+... ....+.+.++.++-+|+|||++... ..+.+...+.. ...|..||+||....
T Consensus 173 ~~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 173 NDLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 3333333221 1223344444366799999995432 22333322211 145778999888631
Q ss_pred ----hhhcCCcceeEeeccCChhhHHHHHhhhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 276 ----VLSNCLVDQIYEVKELLDVDALKLFSRRAFGED-DPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 276 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
+...+.....+.+++++.++..+++...+.... ..++ +....|++.+.|.+-.+.-
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 111122235788999999999999988763211 1121 3466788888888855443
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=3.4e-06 Score=93.53 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=106.3
Q ss_pred cCCCCccccccchHHHHHHhh-hcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe---------------
Q 046086 128 ENDNKELVGVECPINEIESLL-RTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN--------------- 191 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--------------- 191 (966)
|.....++|.+..++.+..++ ..+ .... +.|+|+.|+||||+|+.++..+...-.+.+++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 445678999999999999988 443 2233 8999999999999999999865332222221110
Q ss_pred --------ehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCC
Q 046086 192 --------VQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWL 261 (966)
Q Consensus 192 --------~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~ 261 (966)
..............++++..+....... ... .+ ..+.+++-++|+|+++..+ ..+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0000000000001112222221110000 000 00 0023366699999997642 234444433333
Q ss_pred CCCcEEEEEeCchh-hhhcC-CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 262 ASGSRIIITTRDKH-VLSNC-LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 262 ~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.++.++|++|.+.. +.... .....+++++++.++..+.+...+-.....-+ ..+.+..|++.++|.+-.+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHH
Confidence 46778888887653 21111 12367899999999999999877632221100 024577888999998865443
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.30 E-value=2.5e-05 Score=84.92 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=103.6
Q ss_pred CCCCccccccchHHHHHHhhhc---------C-CCCceEEEEeecCCCchhHHHHHHHHHh-hccCCceEEEEeehhhhc
Q 046086 129 NDNKELVGVECPINEIESLLRT---------G-SAGVCKLGIWGIGGIGKTTIAGAVFNKT-SRHFEGSYFAHNVQEAQE 197 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~~~ 197 (966)
..-++++|.+..+++|.+.+.. + ....+-|.|+|++|+|||+||+++++.. ...| +.+. ......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHh
Confidence 3456789999999888876631 1 1224679999999999999999999986 2221 1121 111000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCC---C
Q 046086 198 NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDW---L 261 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~---~ 261 (966)
. ............+......++.+|++|+++... ....++..+.. .
T Consensus 85 -----------------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 85 -----------------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp -----------------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred -----------------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 0 000111111222222234577899999997641 12233322221 2
Q ss_pred CCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHhHh
Q 046086 262 ASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP-LALKVLG 336 (966)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P-Lal~~~g 336 (966)
..+..||.||........ ...+..+.++..+.++..+++..+.-...... .......+++.+.|.. -.|..+.
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344556667765532211 13446788999999999999988763322111 1234677888888764 3344443
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.30 E-value=1.7e-05 Score=87.69 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=103.8
Q ss_pred cCCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhc
Q 046086 128 ENDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQE 197 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 197 (966)
+..-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +.+. ...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~--- 119 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD--- 119 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHH---
Confidence 34456799999999999887631 112234588999999999999999999874332 1121 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccC---CC
Q 046086 198 NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRID---WL 261 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~---~~ 261 (966)
+ .. .. ...........+......++.+|+||+++... ....++..+. ..
T Consensus 120 ------l----~~----~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 120 ------L----VS----KW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp ------H----HS----CC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred ------H----hh----hh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 1 00 00 00011111222222234577899999997532 1233332222 12
Q ss_pred CCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHhHh
Q 046086 262 ASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV-PLALKVLG 336 (966)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~-PLal~~~g 336 (966)
..+..||.||.....+.. ......+.++..+.++..+++..++........ ......|++.+.|. +-.|..+.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566667765532211 134467789999999999999887643321111 23456778888874 43444443
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.30 E-value=4.4e-06 Score=90.09 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=103.4
Q ss_pred ccCCCCccccccchHHHHHHhhhcC----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 127 FENDNKELVGVECPINEIESLLRTG----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
++.....++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.++......| +.+. .....
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~ 91 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLT 91 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHh
Confidence 3445678999999999998877421 11246789999999999999999998764322 1222 11110
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhh-hHHHHHHHhcCCcEEEEEecCCCh-------------HHHHHHhcccCC--
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNI-VLNFQSKRFTRKKVLIVFDDVTHL-------------KQIEFLIGRIDW-- 260 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~-- 260 (966)
.. ....... ....+......++.+|++|+++.. .....++..+..
T Consensus 92 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 92 SK-------------------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp SS-------------------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred hc-------------------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 00 0001111 111222223456789999999543 111222221111
Q ss_pred ---CCCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHH
Q 046086 261 ---LASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALK 333 (966)
Q Consensus 261 ---~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~ 333 (966)
.+.+..||.||.....+.. ......+.++..+.++..+++...+-.....- ..+....+++.+.|.+- +|.
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHH
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHH
Confidence 1234566777776532211 02235677888888888888877653222111 12456778888988875 554
Q ss_pred hHh
Q 046086 334 VLG 336 (966)
Q Consensus 334 ~~g 336 (966)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.27 E-value=7.1e-05 Score=84.12 Aligned_cols=130 Identities=10% Similarity=0.175 Sum_probs=88.7
Q ss_pred eeeecchhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc----cccccceEeecCCCCCcccc
Q 046086 487 EIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN----IRAENLVSLKLPGSNVEQLW 559 (966)
Q Consensus 487 ~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp----~~l~~L~~L~L~~n~i~~l~ 559 (966)
...+...+|.++++|+.+.+..|....+..+....| ..|+.+.+..+ ++.++ ....+|+.+.++.+ +..++
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~ 152 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVA 152 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeec
Confidence 456888899999999999998775555666777666 56665555432 45555 56678999998754 45554
Q ss_pred cc-cccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccC
Q 046086 560 DD-VQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRL 622 (966)
Q Consensus 560 ~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 622 (966)
.. +..+.+|+.+.+..+ ...+. .|. ..+|+.+.+..+ ........+..+.+|.......
T Consensus 153 ~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred ccceecccccccccccce--eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccc
Confidence 43 778899999998765 33444 254 367888888763 3333445677788888777653
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.26 E-value=1.3e-05 Score=89.27 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=105.0
Q ss_pred CCccccccchHHHHHH---hhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 131 NKELVGVECPINEIES---LLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
.+.+||++..++.+.. .+..+....+.+.|+|++|+|||++|+.+++.+...... +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 5689999999877544 444433334689999999999999999999987643221 122211111111222222222
Q ss_pred HHHHHhCC---------------------C--------C-CCCChhhhHHHHHHHh-----cCC----cEEEEEecCCCh
Q 046086 208 LLSTLLND---------------------R--------N-VKNSPNIVLNFQSKRF-----TRK----KVLIVFDDVTHL 248 (966)
Q Consensus 208 ll~~l~~~---------------------~--------~-~~~~~~~~~~~l~~~L-----~~k----~~LlVLDdv~~~ 248 (966)
.+...... . . ...........+.+.. .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221000 0 0 0000111222221111 233 359999999764
Q ss_pred --HHHHHHhcccCCCCCCcEEEEEeCc-h------------hhhhc-CCcceeEeeccCChhhHHHHHhhhhcCCCCCCc
Q 046086 249 --KQIEFLIGRIDWLASGSRIIITTRD-K------------HVLSN-CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNA 312 (966)
Q Consensus 249 --~~~~~l~~~~~~~~~gs~IIiTTR~-~------------~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 312 (966)
+....+...+...... .++++|.. . .+... ......+.+++++.++..+++...+-.....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~-- 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE-- 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC--
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 3344555444433333 34444431 1 01000 0112357999999999999998776432221
Q ss_pred cHHHHHHHHHHHcC-CCchhHHhH
Q 046086 313 SYKELTQEAVKYAK-GVPLALKVL 335 (966)
Q Consensus 313 ~~~~~~~~iv~~~~-G~PLal~~~ 335 (966)
--.+....+++++. |.|-.+..+
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 12356778888887 887655443
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.25 E-value=2.3e-05 Score=84.43 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=102.7
Q ss_pred CCCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhc
Q 046086 129 NDNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQE 197 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 197 (966)
..-++++|.+..+++|.+.+.. +-...+.|.|+|++|.|||+||+++++.....| +.+. .
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~----- 82 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G----- 82 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h-----
Confidence 3456799999999998887642 223456799999999999999999999764322 1221 1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCC-
Q 046086 198 NGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDW- 260 (966)
Q Consensus 198 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~- 260 (966)
..+. ....+.. .......+.......+.+|++|+++... ....++..+..
T Consensus 83 ----~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 83 ----PELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ----HHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ----HHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 1121 2222211 1122333344445678899999997532 12333332221
Q ss_pred -CCCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCch
Q 046086 261 -LASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVPL 330 (966)
Q Consensus 261 -~~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~PL 330 (966)
...+..||.||.....+.. ......+.++..+.++-.+++..+.-.... ...+ ...+++.+.|.|-
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 1245677777776643321 134467889999999999988776633221 1122 2345556666664
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=1.1e-05 Score=88.29 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=97.3
Q ss_pred CCccc-cccch--HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 131 NKELV-GVECP--INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 131 ~~~~v-Gr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
.++|| |.... ...+...+.......+.+.|+|++|+||||||+.+++.+...-...+++.. ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~----------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA----------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH----------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH----------HHHHHH
Confidence 44565 54333 334444444332245679999999999999999999987544223344431 112222
Q ss_pred HHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----HHHHHhcccCC-CCCCcEEEEEeCchhh------
Q 046086 208 LLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----QIEFLIGRIDW-LASGSRIIITTRDKHV------ 276 (966)
Q Consensus 208 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~v------ 276 (966)
+...+... ....+.+.+. ++-+|++||++... ..+.+...+.. ...|.+||+||.....
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 32222211 1112222232 35689999995532 22222222111 1356678888864311
Q ss_pred ---hhcCCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 277 ---LSNCLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 277 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
...+.....+++++ +.++..+++...+......- -.+....+++++ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHH
Confidence 11122235789999 99999999988774322211 135567788888 77643
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.21 E-value=8.1e-06 Score=88.53 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHhhhcC-------------CCCceEEEEeecCCCchhHHHHHHHHHhhccCC----ceEEEEeehhh
Q 046086 133 ELVGVECPINEIESLLRTG-------------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE----GSYFAHNVQEA 195 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~ 195 (966)
.++|.+..+++|.+.+... ......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 4789999888888765421 233456899999999999999999987654321 122222 1110
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCC-----------ChHHHHHHhcccCCCCCC
Q 046086 196 QENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVT-----------HLKQIEFLIGRIDWLASG 264 (966)
Q Consensus 196 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~-----------~~~~~~~l~~~~~~~~~g 264 (966)
.. . ............+... +.-+|++|+++ ..+.+..|...+.....+
T Consensus 111 ~~-----------------~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 VG-----------------Q-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CC-----------------S-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hh-----------------h-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 0 0000001111122221 34589999997 334455555555444567
Q ss_pred cEEEEEeCchh----------hhhcCCcceeEeeccCChhhHHHHHhhhhc
Q 046086 265 SRIIITTRDKH----------VLSNCLVDQIYEVKELLDVDALKLFSRRAF 305 (966)
Q Consensus 265 s~IIiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 305 (966)
..||.||.... +.. .....+.+++++.++..+++...+-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 78888886532 111 2236889999999999999987764
No 199
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.21 E-value=0.00014 Score=81.08 Aligned_cols=261 Identities=12% Similarity=0.200 Sum_probs=127.2
Q ss_pred ceeeeecccccccceeeecchhhcCCCCCceEEEecCCCccccccCCCCC--CceeEEEecCCCCcccc---cccccceE
Q 046086 473 AIQAISLDMSKVNNEIRINRSTFSKMPKLRFLKFYGKNKCMLSHFKGVPF--TDVRYFEWHEFPLKTLN---IRAENLVS 547 (966)
Q Consensus 473 ~v~~i~Ld~s~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~--~~L~~L~l~~~~l~~lp---~~l~~L~~ 547 (966)
.++.+.+.-+ ...|...+|.++.+|+.+.+..+ +..+....| .+|..+.+.. .++.++ +...+|+.
T Consensus 47 ~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 47 RISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred CCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCCCCceEECCc-eeeEeccceeccCCccc
Confidence 4555554321 55788889999999999999653 456666666 4455544432 234444 33345666
Q ss_pred eecCCCCCcccccccccccccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCC
Q 046086 548 LKLPGSNVEQLWDDVQNLVNIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCES 625 (966)
Q Consensus 548 L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 625 (966)
+.++.+ +..+......-.+|+.+.+..+- ..+. .|....+|+.+.+..+.........+.. . .
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~-----------~ 182 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-N-----------K 182 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTTC--CEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-E-----------T
T ss_pred ccCCCc-cccccccccccceeeeeecccee--eccccchhcccccccccccccccceeecccceec-c-----------c
Confidence 665543 33333322222234444433321 1111 2444455555544432211111000000 0 0
Q ss_pred CcccCCcc-CCCcccEEEecCCCCC-CCCcccccCcccEEeeccccccccc-ccccCCCCCCEEeccCCCCccccccccc
Q 046086 626 LRSLPDTI-CSESLFELRLWGCLNL-KNFPEISSSHIHFLDLYECGIEDMP-LSIECLSKLNSLDIHNCTRLEYIKSSIF 702 (966)
Q Consensus 626 l~~lp~~~-~l~~L~~L~L~~~~~l-~~~p~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~~p~~l~ 702 (966)
........ ...++..+.+...... .........+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +...-...+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp TSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred ccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 00000000 1122222222221100 0000011114555555433 33332 34667778888888665 3333344567
Q ss_pred CCCCCcEEEccCCCCCccccc-cccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecC
Q 046086 703 KLKSLKHIEISSCSNLKRFPE-ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISY 764 (966)
Q Consensus 703 ~l~~L~~L~Ls~~~~l~~~p~-~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~ 764 (966)
++.+|+.+.+..+ +..++. .+..|. +|+.+.+.++.++.|+. .+.++++|+.+.|..
T Consensus 261 ~~~~l~~i~l~~~--i~~i~~~aF~~c~---~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 261 NCTALKTLNFYAK--VKTVPYLLCSGCS---NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCTTCCEEEECCC--CSEECTTTTTTCT---TCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeehhcccccccc--ceecccccccccc---ccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 7888888888642 444443 344444 88888888888888774 667888888888753
No 200
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.21 E-value=6.8e-06 Score=81.48 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.....++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999865 33456789999999999999999997754
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.20 E-value=2.7e-05 Score=87.31 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=102.9
Q ss_pred ccCCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 127 FENDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
.+.....++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.++++....| +..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344567899999999999988731 011246799999999999999999998754322 211111100
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-------------HHHHHHhcccC----
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-------------KQIEFLIGRID---- 259 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~---- 259 (966)
. ... ..........+.......+.+|+||+++.. .....++..+.
T Consensus 186 ~-----~~~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 186 S-----KYV-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred c-----ccc-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 0 000 000011112222222345679999999654 11122222111
Q ss_pred CCCCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHhH
Q 046086 260 WLASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPL-ALKVL 335 (966)
Q Consensus 260 ~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PL-al~~~ 335 (966)
.......||.||.....+.. ......+.++..+.++..+++...+-.....- ..+....+++.+.|..- +|..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 11234456667765432211 12335678889999999999987764322211 12456788888888554 55444
Q ss_pred h
Q 046086 336 G 336 (966)
Q Consensus 336 g 336 (966)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.20 E-value=1.9e-05 Score=86.23 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=103.9
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQ 207 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 207 (966)
|...++++|.+..++.+.+++..+ ...+++.+.|++|+|||++|+.+++.+... .+.+. . ...+...+.+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~----~~~~~~~i~~~ 92 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G----SDCKIDFVRGP 92 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T----TTCCHHHHHTH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c----cccCHHHHHHH
Confidence 445678999999999999999753 234577888899999999999999887422 22222 1 11222222221
Q ss_pred HHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH---HHHHHhcccCCCCCCcEEEEEeCchhhhhc-C-Cc
Q 046086 208 LLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK---QIEFLIGRIDWLASGSRIIITTRDKHVLSN-C-LV 282 (966)
Q Consensus 208 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~-~~ 282 (966)
+ ....... ...+++-+||+||++... ..+.+...+.....+.++|+||....-... . ..
T Consensus 93 ~-~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 93 L-TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp H-HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred H-HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 1 1111000 012367899999998754 344444443333456788888876542111 0 11
Q ss_pred ceeEeeccCChhhHHHHH-------hhhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 046086 283 DQIYEVKELLDVDALKLF-------SRRAFGEDDPNASYKELTQEAVKYAKGVPLAL 332 (966)
Q Consensus 283 ~~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal 332 (966)
...+++++++.++-.+++ ...+......- ...+....+++.++|.+-.+
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHH
Confidence 247889999988743332 22221111111 01245777888888877543
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.16 E-value=4.4e-05 Score=86.90 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=106.1
Q ss_pred ccCCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 127 FENDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
++..-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++... ..-|+...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~---- 200 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSIS---- 200 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEEC----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEe----
Confidence 344557899999999999887631 112346799999999999999999999862 11222211
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-------------HHHHHHhcccCCC--
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-------------KQIEFLIGRIDWL-- 261 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~~-- 261 (966)
. .. +. ....+. ... .....+......++.+|+||+++.. .....++..+...
T Consensus 201 ~-~~---l~----~~~~g~--~~~---~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 201 S-SD---LV----SKWLGE--SEK---LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp C-C------------------CCC---THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred H-HH---HH----hhhcch--HHH---HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 0 00 10 010111 111 1122222223457789999999754 1234455444332
Q ss_pred -CCCcEEEEEeCchhhhhc---CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHhH
Q 046086 262 -ASGSRIIITTRDKHVLSN---CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGV-PLALKVL 335 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~-PLal~~~ 335 (966)
..+..||.||.....+.. ...+..+.++..+.++..++|..++....... .......|++.+.|. +-.|..+
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 345667777766533221 13345778888888888999988763322111 123456778888874 3344443
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.15 E-value=2e-05 Score=89.49 Aligned_cols=178 Identities=16% Similarity=0.243 Sum_probs=104.4
Q ss_pred cCCCCccccccchH---HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 128 ENDNKELVGVECPI---NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 128 ~~~~~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
|...+.+||.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.....|. -+. ....+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~-----a~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS-----AVTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE-----TTTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE-----eccCCHHHH
Confidence 44567899999888 6777777653 3467999999999999999999998754431 111 111222222
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH--HHHHHhcccCCCCCCcEEEE-EeCchh--hhhc
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK--QIEFLIGRIDWLASGSRIII-TTRDKH--VLSN 279 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIi-TTR~~~--v~~~ 279 (966)
.+.+ .. .......+++.+|++|+++... +.+.|+..+.. ....+|. ||.+.. +...
T Consensus 92 r~~~-~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAI-ER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-HH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHH-HH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 2111 10 0111124567899999997643 33444443332 2234444 444432 1111
Q ss_pred -CCcceeEeeccCChhhHHHHHhhhhcCCC-----CCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 280 -CLVDQIYEVKELLDVDALKLFSRRAFGED-----DPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 280 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.....++.+++++.++..+++.+.+-... ....-..+....++++++|.+-.+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 12234788999999999999988764311 11111245677888899998865443
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=1.7e-05 Score=75.35 Aligned_cols=48 Identities=25% Similarity=0.215 Sum_probs=36.7
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 133 ELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 579999999999887753222334578999999999999999988643
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=0.00012 Score=76.93 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCCccccccchHHHHHHhhhc--C--------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...++++|.+..++++.+.+.. . ..-.+-+.|+|++|.||||+|+.+++.....| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 4456789999888887765431 0 11234588999999999999999998764332 2222 1110000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh----------------HHHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL----------------KQIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~~- 261 (966)
............+.......+.++++|+++.. ..+..++..+...
T Consensus 85 ------------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 85 ------------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ------------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00011112222333333456779999998321 1223333222211
Q ss_pred -CCCcEEEEEeCchhhhhc-C----CcceeEeeccCChhhHHHHHhhhh
Q 046086 262 -ASGSRIIITTRDKHVLSN-C----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
..+..||.||........ . ..+..+.++..+.++-.+++..+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 234567777766542211 1 234577788888888888887665
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.93 E-value=7.2e-05 Score=85.74 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=98.7
Q ss_pred CCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
...++|.+..+++|.+++... ....+-|.|+|++|.|||++|++++++....| +.+. ........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhhh
Confidence 356999999999998887531 23345689999999999999999998763222 2222 21111000
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh-------------HHHHHHhcccCC--CCCC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL-------------KQIEFLIGRIDW--LASG 264 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~g 264 (966)
. ..........+.....+++.+|+||+++.. .....|+..+.. ...+
T Consensus 279 -~-----------------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 -A-----------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -T-----------------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -c-----------------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 0 000111223334444567789999998321 112223322221 1234
Q ss_pred cEEEEEeCchhhh-----hcCCcceeEeeccCChhhHHHHHhhhhcCCCCC-CccHHHHHHHHHHHcCCC
Q 046086 265 SRIIITTRDKHVL-----SNCLVDQIYEVKELLDVDALKLFSRRAFGEDDP-NASYKELTQEAVKYAKGV 328 (966)
Q Consensus 265 s~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~iv~~~~G~ 328 (966)
.+||.||.....+ ........+.++..+.++-.+++..++-..... ..+ ..++++++.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCC
Confidence 5666677765322 112344578899999999999998876332211 112 34556666664
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0002 Score=78.76 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
.-+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||++++++....| +.+. ..+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhcc
Confidence 346788999999999887642 223356689999999999999999999876543 1121 1111110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
. . ..........+...-...+.+|++|+++... .+..++..++.+
T Consensus 222 ~-v-----------------Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 222 Y-I-----------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp S-T-----------------THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred c-c-----------------chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 0 0000111122222334578999999986421 133344333322
Q ss_pred -CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 262 -ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
..+..||.||.....+.. -..+..++++..+.++..++|..+.-+... ...+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 234456677776644321 245678999999999999999877633221 1223 355667777754
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=7.5e-06 Score=81.38 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=67.0
Q ss_pred cccEEeeccc-ccc-----cccccccCCCCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCCCCcc----cccc
Q 046086 659 HIHFLDLYEC-GIE-----DMPLSIECLSKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCSNLKR----FPEI 724 (966)
Q Consensus 659 ~L~~L~L~~n-~i~-----~lp~~~~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~----~p~~ 724 (966)
+|++|+|++| .+. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|..... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3555555555 554 234456667778888888876543 2344455567788888888655432 2333
Q ss_pred ccCCCCCCCccEEEc--CCCCccc-----cchHhhcCCCCCEEeecCCCC
Q 046086 725 SSSCNREGSTEVLHL--KGNNLER-----IPESIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 725 ~~~~~~~~~L~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~n~~ 767 (966)
+.... +|+.|+| ++|.|+. +...+...++|++|+|++|.+
T Consensus 117 L~~n~---~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNT---SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCS---SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCC---CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33333 7888888 7787762 455667778888888888864
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=0.00026 Score=77.67 Aligned_cols=182 Identities=15% Similarity=0.205 Sum_probs=104.5
Q ss_pred cCCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHH
Q 046086 128 ENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQ 206 (966)
Q Consensus 128 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~ 206 (966)
|.....++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.++..+... +... +.. .. .+...+...+.+
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~-~~-~~~~~~~~~ir~ 95 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VLE-LN-ASDDRGIDVVRN 95 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EEE-EC-TTSCCSHHHHHT
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EEE-Ec-CcccccHHHHHH
Confidence 344567889999999998888754 23338999999999999999999976432 1111 111 10 111122222221
Q ss_pred HHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhc-CCc
Q 046086 207 QLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSN-CLV 282 (966)
Q Consensus 207 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~ 282 (966)
. ........ ....+.+-++|+|+++.. +..+.+...+.......++|++|.... +... ...
T Consensus 96 ~-i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 96 Q-IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp H-HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred H-HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 1 11111000 001234668899998643 334444444433346677777776542 1111 112
Q ss_pred ceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 046086 283 DQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLA 331 (966)
Q Consensus 283 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLa 331 (966)
...+++.+++.++..+.+...+-.....- ..+..+.+++.++|.+--
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 24788999999998888877653222111 134577888999998864
No 211
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=0.00024 Score=77.65 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=100.4
Q ss_pred cchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHh----
Q 046086 138 ECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLL---- 213 (966)
Q Consensus 138 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---- 213 (966)
+...+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+....... .. ..+.-.....+.....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~--------~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK--------SCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB--------CCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC--------CCCCCHHHHHHhcCCCCCEE
Confidence 34455666666543 2345689999999999999999999765332100 00 0000000000000000
Q ss_pred --CCC--CCCCChhhhHHHHHHHh-----cCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCchh-hhhcC-
Q 046086 214 --NDR--NVKNSPNIVLNFQSKRF-----TRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDKH-VLSNC- 280 (966)
Q Consensus 214 --~~~--~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~- 280 (966)
... ......+...+ +.+.+ .+++-++|+|+++.. +....|+..+....++..+|++|.+.. +....
T Consensus 78 ~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 000 00011111111 11221 245678899999764 345566665555556778887777653 22221
Q ss_pred CcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHhHh
Q 046086 281 LVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKVLG 336 (966)
Q Consensus 281 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~~g 336 (966)
.....+++++++.++..+.+.... ... .+.+..+++.++|.|..+..+.
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 223578999999999999998775 111 2446788999999997654443
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00021 Score=79.95 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=102.8
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
.-+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +..........
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 346788999999999887642 223457799999999999999999999876443 22111111110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
.. ..............-...+.+|++|+++... .+..++..++.+
T Consensus 255 ~~------------------Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 255 YI------------------GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SS------------------SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred cc------------------hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00 0000111122222334678999999996321 123344333322
Q ss_pred -CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 262 -ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
..+..||.||.....+.. ...+..++++..+.++..++|..+.-+... ...+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 234567778876654432 124678899988999989999877643221 2223 345666777653
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.83 E-value=1.6e-05 Score=84.33 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
.....++|.+..++++.+.+.. +....+-+.|+|++|+|||++|+.++++....|-. +. .......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~~ 83 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIEM 83 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTTS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHHh
Confidence 3456799999999998887651 11123347899999999999999999987544321 11 0000000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-----------------HHHHHhcccCCC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-----------------QIEFLIGRIDWL 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----------------~~~~l~~~~~~~ 261 (966)
..+. ........ +......++.+|+||+++... .+..++..+...
T Consensus 84 -------------~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 84 -------------FVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -------------CSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -------------hcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0000 01111112 222223466799999996532 122233333322
Q ss_pred C---CCcEEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhh
Q 046086 262 A---SGSRIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 262 ~---~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
. ....||.||.....+. .......+.++..+.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 2245677776654222 11234567888888888888887665
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.80 E-value=0.00011 Score=84.13 Aligned_cols=149 Identities=11% Similarity=0.105 Sum_probs=83.3
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 34567999999999999998652 234578999999999999999999875432 1122211111
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhh---hc
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVL---SN 279 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~---~~ 279 (966)
....+. .. ......+...-..++.+|++| ...+....|.+.+. ....++|.||...... ..
T Consensus 246 -------~~~~g~--~e---~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYRGE--FE---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ----------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------ccccch--HH---HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000000 00 112222333334567889999 22222333444433 2235666666544311 10
Q ss_pred C----CcceeEeeccCChhhHHHHHhhhh
Q 046086 280 C----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 280 ~----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
. .....+.++.++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 112368899999999999998665
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00035 Score=77.80 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=100.2
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
-.++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||++++++....| +.+. ........
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhccc
Confidence 35789999999999886531 223467799999999999999999999876543 1121 11111000
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCCC-
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWLA- 262 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~~- 262 (966)
...........+...-...+.+|++|+++... .+-.++..++.+.
T Consensus 284 ------------------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 284 ------------------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ------------------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ------------------CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00000111222223334678999999986431 1222333333222
Q ss_pred -CCcEEEEEeCchhhhh-----cCCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCC
Q 046086 263 -SGSRIIITTRDKHVLS-----NCLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 263 -~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~ 328 (966)
.+..||.||.....+. .-+.+..++++..+.++..++|..+.-+... ...+ ...+++.+.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 3344566776554332 1245678999999999999999877633221 1222 34566777775
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.79 E-value=0.00026 Score=80.36 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=100.0
Q ss_pred CCCccccccchHHHHHHhhhc----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 130 DNKELVGVECPINEIESLLRT----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
...+++|.+..++++.+.+.. +..-.+-|.|+|++|.|||+||+.++.+....| +.+. ........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH
Confidence 346789999988888776541 111134588999999999999999999764332 1222 11111100
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh----------------HHHHHHhcccCCC--
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL----------------KQIEFLIGRIDWL-- 261 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~~-- 261 (966)
. ..........+.......+.+|+||+++.. ..+..++..++.+
T Consensus 90 -~-----------------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 -V-----------------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp -T-----------------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred -h-----------------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 000111223344444567889999998542 1233343332211
Q ss_pred CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCC-CccHHHHHHHHHHHcCCCc
Q 046086 262 ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDP-NASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 262 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~iv~~~~G~P 329 (966)
..+..||.||.....+.. ...+..+.++..+.++-.+++..++-..... ..+ ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 245567777777654331 1234578888888888888887766332211 112 344677788876
No 217
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00023 Score=79.58 Aligned_cols=171 Identities=16% Similarity=0.179 Sum_probs=100.0
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||++++++....| +..........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 446789999999999876531 223456799999999999999999999875443 22111111110
Q ss_pred -CC-HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCC
Q 046086 199 -GG-LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDW 260 (966)
Q Consensus 199 -~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 260 (966)
.+ -.... ...+...-...+++|++|+++... .+..++..++.
T Consensus 255 ~vGese~~i--------------------r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 255 YIGEGAKLV--------------------RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CSSHHHHHH--------------------HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHH--------------------HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 00 01111 111122223468899999985321 12334444443
Q ss_pred CC--CCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCC-CCCccHHHHHHHHHHHcCCC
Q 046086 261 LA--SGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGED-DPNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 261 ~~--~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~~~G~ 328 (966)
+. .+..||.||.....+.. ...+..++++..+.++..++|..+.-+.. ....+ ...+++.+.|.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 33 33455667776654432 13567889999999998999877653222 12222 34566677664
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.78 E-value=8.3e-05 Score=74.89 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCCccccccc----hHHHHHHhhhcCCCC--ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 130 DNKELVGVEC----PINEIESLLRTGSAG--VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 130 ~~~~~vGr~~----~l~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..++|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+.+++....+...++|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776553 334455555433221 267999999999999999999998876655566664
No 219
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=0.00011 Score=72.53 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=30.1
Q ss_pred cchHHHHHHhhhcC-CCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 138 ECPINEIESLLRTG-SAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 138 ~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...++.+.+++..- ....+.++|+|++|+||||||+.++..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444444321 12346899999999999999999999875
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00025 Score=78.17 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=100.2
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
.-.++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||++++++....| +.....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 346788999999999887642 223356799999999999999999999876443 22112111110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
. ...........+...-...+.+|++|+++... .+..++..++.+
T Consensus 256 ~------------------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 256 Y------------------LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp S------------------SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred c------------------CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 00000111112222234578999999985321 123333333322
Q ss_pred -CCCcEEEEEeCchhhhhcC-----CcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCC
Q 046086 262 -ASGSRIIITTRDKHVLSNC-----LVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~ 328 (966)
..+..||.||-....+... ..+..++++..+.++..++|..+.-+... ...+ ...+++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 2344566777766544321 34567889988999999999877633221 1223 34566667664
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=1.9e-05 Score=82.66 Aligned_cols=96 Identities=23% Similarity=0.174 Sum_probs=55.1
Q ss_pred Eeeccccccccccc----ccCCCCCCEEeccCCCCcc--cccccccCCCCCcEEEccCCCCCccccccccCCCCCCCccE
Q 046086 663 LDLYECGIEDMPLS----IECLSKLNSLDIHNCTRLE--YIKSSIFKLKSLKHIEISSCSNLKRFPEISSSCNREGSTEV 736 (966)
Q Consensus 663 L~L~~n~i~~lp~~----~~~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~~~~~~~L~~ 736 (966)
++++.|....++.. ..++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|...+ + ..+..+..+ +|+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l-~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGL-KLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTS-CCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccC-Ccce
Confidence 44555544433332 2457788888888887765 455566677777777777755433 2 122333333 6666
Q ss_pred EEcCCCCcc-ccc-------hHhhcCCCCCEEe
Q 046086 737 LHLKGNNLE-RIP-------ESIRHLSKLKSLD 761 (966)
Q Consensus 737 L~Ls~n~l~-~lp-------~~i~~l~~L~~L~ 761 (966)
|+|++|.+. .+| ..+..+++|+.||
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 666666665 343 1245666666665
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00027 Score=78.92 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh-cc
Q 046086 131 NKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ-EN 198 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~ 198 (966)
-.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +........ ..
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 45789999999999887642 223456799999999999999999999875443 211111111 00
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC-
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL- 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~- 261 (966)
.+ .........+...-...+.+|++|+++... .+..++..++.+
T Consensus 247 ~G-------------------e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LG-------------------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CS-------------------HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cc-------------------hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 00 000111122222334578999999984211 133333333322
Q ss_pred -CCCcEEEEEeCchhhhh-----cCCcceeEeeccCC-hhhHHHHHhhhhcCCC-CCCccHHHHHHHHHHHcCCC
Q 046086 262 -ASGSRIIITTRDKHVLS-----NCLVDQIYEVKELL-DVDALKLFSRRAFGED-DPNASYKELTQEAVKYAKGV 328 (966)
Q Consensus 262 -~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~-~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~~~G~ 328 (966)
..+..||.||.....+. ....+..++++.++ .++-.++|..+.-+.. .+..+ ...+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 34456677777664332 12345677787664 4555666766553322 12223 34566666664
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=0.00096 Score=72.82 Aligned_cols=174 Identities=15% Similarity=0.129 Sum_probs=95.4
Q ss_pred CCCCccccccchHHHHHHhhhcC---CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHH
Q 046086 129 NDNKELVGVECPINEIESLLRTG---SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLR 205 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~ 205 (966)
.....++|.+..++.+...+..+ ......++|+|++|.||||||+.++..+...|. .. ..... .....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~-sg~~~--~~~~~l- 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT-SGPVL--VKQGDM- 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE-ETTTC--CSHHHH-
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE-echHh--cCHHHH-
Confidence 34567889988888887776532 223457999999999999999999998753321 11 10000 000111
Q ss_pred HHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCC--------C----------CCc
Q 046086 206 QQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWL--------A----------SGS 265 (966)
Q Consensus 206 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~gs 265 (966)
.. +...+. ++-++++|++... ...+.+....... + +..
T Consensus 94 --------------------~~-~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 94 --------------------AA-ILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --------------------HH-HHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred --------------------HH-HHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 11 111122 3346778887543 2233332211110 0 112
Q ss_pred EEEEEeCchh-hhhc--CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 266 RIIITTRDKH-VLSN--CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 266 ~IIiTTR~~~-v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
.++-+|+... +... -.....+.+++.+.++-.+++.+.+-.... ....+.+..|++++.|.|-.+.-
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHH
Confidence 2333333332 2111 122345789999999999999887632111 12245688899999999965433
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=0.00012 Score=90.81 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=82.6
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.+|||+.+++++.+.+... ..+.+.++|.+|+||||+|+.+++++.... ...++..+......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----
Confidence 44567999999999999998653 234578999999999999999999874321 22222221111100
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHH-HHHHHhc-CCcEEEEEecCCChH---------H-HHHHhcccCCCCCCcEEEEE
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLN-FQSKRFT-RKKVLIVFDDVTHLK---------Q-IEFLIGRIDWLASGSRIIIT 270 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~-~l~~~L~-~k~~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~IIiT 270 (966)
............. .+...-. +++.+|++|+++... + ...+...+. ..+.++|.|
T Consensus 240 ------------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 240 ------------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred ------------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 0000011111122 2222222 367899999997643 1 111222221 233456666
Q ss_pred eCchhh-----hhcC-CcceeEeeccCChhhHHHHHhhh
Q 046086 271 TRDKHV-----LSNC-LVDQIYEVKELLDVDALKLFSRR 303 (966)
Q Consensus 271 TR~~~v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 303 (966)
|..... .... .....+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 654322 1111 11235889999999999998643
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=0.0003 Score=86.15 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc------CCceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH------FEGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.++||+.+++++.+.+... ...-+.|+|.+|+||||+|+.+++++... ....+|..+.....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------ 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------ 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh------
Confidence 44567999999999999998653 34457899999999999999999976432 12333322111100
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHh-cCCcEEEEEecCCCh----------HHHHH-HhcccCCCCCCcEEEEE
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTHL----------KQIEF-LIGRIDWLASGSRIIIT 270 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~-l~~~~~~~~~gs~IIiT 270 (966)
.........+.....+.+.+ ..++.+|++|+++.. .+... +...+. ..+.++|.+
T Consensus 255 -----------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~a 321 (758)
T 1r6b_X 255 -----------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGS 321 (758)
T ss_dssp -----------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEE
T ss_pred -----------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEE
Confidence 00001112222222222222 345789999999754 12223 333332 234567777
Q ss_pred eCchhhhhcC-------CcceeEeeccCChhhHHHHHhhhh
Q 046086 271 TRDKHVLSNC-------LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 271 TR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
|......... ..-..+.++.++.++..+++...+
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654321111 112368899999999888887544
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=9.5e-06 Score=84.89 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=53.8
Q ss_pred cCCCCCcEEEccCCCCCc--cccccccCCCCCCCccEEEcCCCCccccchHhhcCC--CCCEEeecCCCCccccCC
Q 046086 702 FKLKSLKHIEISSCSNLK--RFPEISSSCNREGSTEVLHLKGNNLERIPESIRHLS--KLKSLDISYCEWLHTLPE 773 (966)
Q Consensus 702 ~~l~~L~~L~Ls~~~~l~--~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~n~~l~~lp~ 773 (966)
.++++|+.|+|++|...+ .+|..+..++ +|+.|+|++|.|+.+. .+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~---~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP---NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST---TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC---CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCc
Confidence 568999999999987655 4455555544 9999999999999774 455555 999999999999887763
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.65 E-value=0.00029 Score=76.05 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHhhhc------------CCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 132 KELVGVECPINEIESLLRT------------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+.++|.+..++.+...+.. .....+.+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999988888877643 011234688999999999999999999874
No 228
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.0031 Score=70.16 Aligned_cols=248 Identities=9% Similarity=0.118 Sum_probs=124.0
Q ss_pred hhhcCCCCCceEEEecCCCccccccCCCCC---CceeEEEecCCCCcccc---cccccceEeecCCCCCccccccccccc
Q 046086 493 STFSKMPKLRFLKFYGKNKCMLSHFKGVPF---TDVRYFEWHEFPLKTLN---IRAENLVSLKLPGSNVEQLWDDVQNLV 566 (966)
Q Consensus 493 ~~f~~l~~L~~L~l~~n~~~~l~~l~~~~~---~~L~~L~l~~~~l~~lp---~~l~~L~~L~L~~n~i~~l~~~~~~l~ 566 (966)
..|....+|+.+.+.. .+..++...| .+|+.+.+..+ ++.++ +.-.+|..+.+.. +++.++.......
T Consensus 40 ~~~~~~~~i~~v~ip~----~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS----GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECT----TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTC
T ss_pred cccccccCCEEEEeCC----CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCc-eeeEeccceeccC
Confidence 3566777888888864 3466666665 56666666432 44554 3333455555542 2444444422233
Q ss_pred ccceecccCCCCCCCCC--CCCCCccCcEEeccCccCCccccccccCCCcccEEeccCCCCCcccCCccCCCcccEEEec
Q 046086 567 NIKEIDLHGSKQLSKLP--DLSQARNLERLKLDGCSSLMETHSSIQYLNKLEVLDLRLCESLRSLPDTICSESLFELRLW 644 (966)
Q Consensus 567 ~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~~l~~lp~~~~l~~L~~L~L~ 644 (966)
+|+.+.+..+- ..+. .|.+ .+|+.+.+..+ ........+..+.+|+.+.+..+....................
T Consensus 114 ~L~~i~lp~~~--~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 188 (379)
T 4h09_A 114 DLDDFEFPGAT--TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE- 188 (379)
T ss_dssp CCSEEECCTTC--CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE-
T ss_pred CcccccCCCcc--cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec-
Confidence 55555555431 1222 1222 23444443321 1222223344455555544443221111111000000000000
Q ss_pred CCCCCCCCcccccCcccEEeecccccccccccccCCCCCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCccccc-
Q 046086 645 GCLNLKNFPEISSSHIHFLDLYECGIEDMPLSIECLSKLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFPE- 723 (966)
Q Consensus 645 ~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p~- 723 (966)
.++ ....+..+.+..+........+....+|+.+.+..+ +...-...+.++.+|+.+.+..+ +..++.
T Consensus 189 ------~~~--~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~ 257 (379)
T 4h09_A 189 ------SYP--AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSF 257 (379)
T ss_dssp ------ECC--TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTT
T ss_pred ------ccc--ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCcc
Confidence 000 001244444433322222345667788888888764 33333456778899999998763 444443
Q ss_pred cccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCC
Q 046086 724 ISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCE 766 (966)
Q Consensus 724 ~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~ 766 (966)
.+..|. +|+.+.+.. +++.++. .+.++++|+.+.+.++.
T Consensus 258 aF~~~~---~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 258 LLQNCT---ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp TTTTCT---TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTT
T ss_pred ccceee---hhccccccc-cceeccccccccccccccccccccc
Confidence 334444 888998865 4777765 56889999999998765
No 229
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=3.7e-05 Score=74.51 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCCEEeccCCCCcccccccccCCCCCcEEEccCCCCCcccc-ccccCCC-CCCCccEEEcCCC-Ccc--ccchHhhcCCC
Q 046086 682 KLNSLDIHNCTRLEYIKSSIFKLKSLKHIEISSCSNLKRFP-EISSSCN-REGSTEVLHLKGN-NLE--RIPESIRHLSK 756 (966)
Q Consensus 682 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~-~~~~L~~L~Ls~n-~l~--~lp~~i~~l~~ 756 (966)
+|+.|++++|.+...--..+.++++|++|+|++|..++.-. ..+..+. ..++|+.|+|++| +++ .+ ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 45555555555433323334556666666666665433210 0011100 0015667777666 355 22 24567788
Q ss_pred CCEEeecCCCCc
Q 046086 757 LKSLDISYCEWL 768 (966)
Q Consensus 757 L~~L~L~~n~~l 768 (966)
|++|+|++|+..
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 888888888643
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=0.00037 Score=75.32 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=42.0
Q ss_pred ccccccchHHHHHHhhhcC------CCC-ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 133 ELVGVECPINEIESLLRTG------SAG-VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++|.+..++.+...+... ... ...+.++|++|+|||++|+.+++.....-...+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 5789999988888877532 111 347999999999999999999997754333334443
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=3.9e-05 Score=72.59 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.0
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3578999999988888753112234488999999999999999987643
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00041 Score=84.80 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC------CceEEEEeehhhhccCCHH
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF------EGSYFAHNVQEAQENGGLA 202 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~ 202 (966)
...+.+|||+.+++++...+... ...-+.++|++|+|||++|+.+++.+.... ...++..+. +
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g-- 245 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G-- 245 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c--
Confidence 34567999999999999998652 234578999999999999999999874321 122221111 0
Q ss_pred HHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhhh----
Q 046086 203 HLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVLS---- 278 (966)
Q Consensus 203 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~---- 278 (966)
....+ .........+......++.+|++| ...+....+.+.+. ....++|.||.......
T Consensus 246 -------~~~~G-----~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 -------TKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------ccccc-----hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000 001122233333344677899999 22233333444433 23456676666544110
Q ss_pred --cC-CcceeEeeccCChhhHHHHHhhhh
Q 046086 279 --NC-LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 279 --~~-~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.. ..-..+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 111468999999999999998654
No 233
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00058 Score=73.24 Aligned_cols=146 Identities=10% Similarity=0.091 Sum_probs=89.7
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh---ccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 136 GVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS---RHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 136 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
|-+..++.|...+..+. .+...++|++|.||||+|+.+++... ........+... ....+...+. ++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~ir-~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDIR-TIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHHH-HHHHHH
Confidence 45667778888886543 67899999999999999999987531 112233333211 1122333332 233322
Q ss_pred hCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCCCCCCcEEEEEeCch-hhhhcCCcceeEeec
Q 046086 213 LNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDWLASGSRIIITTRDK-HVLSNCLVDQIYEVK 289 (966)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~~~~~~~l~ 289 (966)
.... ..+++-++|+|+++.. +..+.|+..+....+.+.+|++|.++ .+....... .++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 1234568899999653 44566666555556778888777555 344433334 89999
Q ss_pred cCChhhHHHHHhhhh
Q 046086 290 ELLDVDALKLFSRRA 304 (966)
Q Consensus 290 ~L~~~ea~~Lf~~~a 304 (966)
+++.++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988776
No 234
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=3.2e-05 Score=74.95 Aligned_cols=84 Identities=14% Similarity=0.271 Sum_probs=49.5
Q ss_pred cceEeecCCCCCccc-ccccccccccceecccCCCCCCCCC--CCCCC----ccCcEEeccCccCCcc-ccccccCCCcc
Q 046086 544 NLVSLKLPGSNVEQL-WDDVQNLVNIKEIDLHGSKQLSKLP--DLSQA----RNLERLKLDGCSSLME-THSSIQYLNKL 615 (966)
Q Consensus 544 ~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l----~~L~~L~L~~~~~~~~-~~~~l~~l~~L 615 (966)
+|++||++++.|+.. ...+..+++|++|+|++|..++.-. .++.+ ++|++|+|++|..++. --..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 466666666665521 1335677778888888876443311 24443 3677777777764332 22345667777
Q ss_pred cEEeccCCCCCc
Q 046086 616 EVLDLRLCESLR 627 (966)
Q Consensus 616 ~~L~L~~n~~l~ 627 (966)
++|+|++|..++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777776544
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.48 E-value=0.00014 Score=69.16 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.-..++|+|..|.|||||++.++......-...+|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3457999999999999999999997754311255654
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.48 E-value=0.0025 Score=66.46 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=81.8
Q ss_pred CCCCccccccchHHHHHHhhhc--C--------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...++++|.+..+.++.++... . -.-.+-+.|+|++|.||||||+.++..... ..+.+.. ......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH-HHHHHH
Confidence 3446788888777776655431 0 011123899999999999999999987652 2233321 110000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhH-HHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVL-NFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWL 261 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~ 261 (966)
. ........ ..+...-...+.++++|+++... .+..+...+...
T Consensus 89 ~-------------------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 89 F-------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp C-------------------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred H-------------------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 0 00000111 11222222356799999984321 122333222211
Q ss_pred --CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhh
Q 046086 262 --ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 262 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.....++.||..+..+.. ...+..++++..+.++-.+++..++
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 122344556766655432 1345678888888888888887665
No 237
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.45 E-value=0.00044 Score=72.86 Aligned_cols=49 Identities=22% Similarity=0.163 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999888776653222235688999999999999999998654
No 238
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.41 E-value=3.8e-05 Score=76.23 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=33.2
Q ss_pred ccCCCCCCEEeccCCCCccc----ccccccCCCCCcEEEc--cCCCCCcc----ccccccCCCCCCCccEEEcCCCCcc
Q 046086 677 IECLSKLNSLDIHNCTRLEY----IKSSIFKLKSLKHIEI--SSCSNLKR----FPEISSSCNREGSTEVLHLKGNNLE 745 (966)
Q Consensus 677 ~~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L--s~~~~l~~----~p~~~~~~~~~~~L~~L~Ls~n~l~ 745 (966)
+...++|++|+|++|.+... +...+...++|++|+| ++|..... +...+.... +|+.|+|++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~---~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT---TLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS---SCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC---CcCEEeccCCCCC
Confidence 34445566666666554321 3344555566666666 44443221 222222222 6777777777665
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.39 E-value=0.0047 Score=65.39 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=92.6
Q ss_pred ccCCCCccccccchHHHHHHhhhc--C--------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhh
Q 046086 127 FENDNKELVGVECPINEIESLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQ 196 (966)
Q Consensus 127 ~~~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 196 (966)
+....++++|.+..++++.++... . -.-.+-+.|+|++|.||||||+.++.... ...+.+.. ....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~-~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG-SDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH-HHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecH-HHHH
Confidence 334456789998888777765431 0 00112389999999999999999998765 22333331 1100
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh----------------HHHHHHhcccCC
Q 046086 197 ENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL----------------KQIEFLIGRIDW 260 (966)
Q Consensus 197 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~ 260 (966)
... .... .......+...-...+.++|+|+++.. ..+..+...+..
T Consensus 111 ~~~-~~~~-----------------~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 111 EMF-VGVG-----------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp HST-TTHH-----------------HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred HHH-hhHH-----------------HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 000 0000 001111122222345679999998421 112333333322
Q ss_pred CC--CCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 261 LA--SGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 261 ~~--~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
.. ....++.||..+.++.. ...+..++++..+.++-.+++..++-+.....+. ....+++.+.|..
T Consensus 173 g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 11 22344556666654332 1345678888888888888887665322111111 1234566666654
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.39 E-value=0.0013 Score=79.16 Aligned_cols=173 Identities=15% Similarity=0.184 Sum_probs=100.4
Q ss_pred CCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
.+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||++++++....| +.+. ..+....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~l~sk- 277 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK- 277 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHHHHSS-
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHHhhcc-
Confidence 45688999999999887642 112356799999999999999999998775432 2222 1111000
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCCC--CCC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDWL--ASG 264 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~g 264 (966)
............+.......+.+|++|+++... .+..++..++.. ..+
T Consensus 278 -----------------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 278 -----------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----------------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -----------------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 000111122233344445678999999985421 123333322221 123
Q ss_pred cEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 046086 265 SRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDD-PNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 265 s~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~iv~~~~G~P 329 (966)
..||.||.....+.. ..-+..++++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 445566665543321 134567899999999999999877633221 1222 455677777754
No 241
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.32 E-value=0.0012 Score=75.56 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=39.1
Q ss_pred CCccccccchHHHHHHhhh---cCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 131 NKELVGVECPINEIESLLR---TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+.++|.+..++.+..++. .+....+-+.++|++|.|||++|+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4689999999887665543 3333345789999999999999999999765
No 242
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.30 E-value=0.001 Score=71.37 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.2
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888876422333458899999999999999999864
No 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.23 E-value=0.0041 Score=71.05 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=94.6
Q ss_pred CCCCccccccchHHHHHHhhhc--C--------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 129 NDNKELVGVECPINEIESLLRT--G--------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
...++++|.+..++++.++... . ..-.+-|.|+|++|.||||||+.++..... ..+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHh
Confidence 3456789999888888776531 1 011234899999999999999999987642 223332 1111110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc----CCcEEEEEecCCCh----------------HHHHHHhccc
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT----RKKVLIVFDDVTHL----------------KQIEFLIGRI 258 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~~~----------------~~~~~l~~~~ 258 (966)
. . ......++..++ ..+.++++|+++.. ..+..++..+
T Consensus 104 ~-~---------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 F-V---------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp C-T---------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred h-h---------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 0 0 011111222222 23579999998432 1133444333
Q ss_pred CCC--CCCcEEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 046086 259 DWL--ASGSRIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRAFGEDDPNASYKELTQEAVKYAKGVP 329 (966)
Q Consensus 259 ~~~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~G~P 329 (966)
+.+ ..+..++.||.....+.. ...+..+.++..+.++-.+++..++-+....... ....+++.+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 322 233455666766655432 1344678899999998888887765322111111 1344566666655
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.22 E-value=0.0011 Score=81.14 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=83.5
Q ss_pred CccccccchHHHHHHhhhcCC-----C--CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHH
Q 046086 132 KELVGVECPINEIESLLRTGS-----A--GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHL 204 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~-----~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 204 (966)
..++|.+..++.+...+.... + ....+.++|++|+|||++|+.+++.....-...+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999999988888776321 1 1236999999999999999999998744333344443 22222111110
Q ss_pred HHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh--HHHHHHhcccCC-----------CCCCcEEEEEe
Q 046086 205 RQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL--KQIEFLIGRIDW-----------LASGSRIIITT 271 (966)
Q Consensus 205 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gs~IIiTT 271 (966)
.......++. ...-+|+||+++.. +....|...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0111122221 23348899999653 333333332221 12456888888
Q ss_pred Cchh-----h----hhc------CCcceeEeeccCChhhHHHHHhhhh
Q 046086 272 RDKH-----V----LSN------CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 272 R~~~-----v----~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.... + ... ...+.++.+++++.++-.+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 7311 0 000 1223578888888888777765543
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.20 E-value=0.0014 Score=70.13 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=24.9
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678999999999999999999988543
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.14 E-value=0.0046 Score=65.19 Aligned_cols=151 Identities=18% Similarity=0.158 Sum_probs=80.4
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCC
Q 046086 132 KELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGG 200 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 200 (966)
.++.|.+...++|.+.+.. +-.-.+-++|+|++|.||||||+.++..... ..+.+.. ..... ..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g-~~l~~-~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKG-PELLN-MY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEET-TTTCS-ST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc-HHHHh-hh
Confidence 4566777766666654320 1011122999999999999999999987643 2233321 11100 00
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH-------------HHHHHhcccCC--CCCCc
Q 046086 201 LAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK-------------QIEFLIGRIDW--LASGS 265 (966)
Q Consensus 201 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~gs 265 (966)
.....+. ............+.++++|+++... ....+...+.. .....
T Consensus 85 ~~~~~~~-----------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 VGESERA-----------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp THHHHHH-----------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhHHHHH-----------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0111000 0111111113457789999986421 12222222221 12334
Q ss_pred EEEEEeCchhhhhcC-----CcceeEeeccCChhhHHHHHhhhh
Q 046086 266 RIIITTRDKHVLSNC-----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 266 ~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
-++.+|..+.++... ..+..+.++..+.++-.+++....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 556677777655431 446678899999999999987765
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=0.0025 Score=77.83 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCCccccccchHHHHHHhhhc-----------CCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRT-----------GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
....++|.+..+++|.+++.. +-...+.|.|+|++|.||||||+.++......| +.+. .......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 346799999999999888753 223345799999999999999999998765433 2222 1111000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh---------H----HHHHHhcccCCC--CC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL---------K----QIEFLIGRIDWL--AS 263 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---------~----~~~~l~~~~~~~--~~ 263 (966)
.... ........+.......+.++++|+++.. + ....+...+... ..
T Consensus 278 -~~g~-----------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 278 -LAGE-----------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -STTH-----------------HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred -hhhh-----------------HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 0000 0011122233333456789999998321 0 112222221111 23
Q ss_pred CcEEEEEeCchhhhhc-C----CcceeEeeccCChhhHHHHHhhhh
Q 046086 264 GSRIIITTRDKHVLSN-C----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 264 gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
+..+|.||.....+.. . .....+.+...+.++-.+++..++
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4566666666532221 1 233567788888888888887665
No 248
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.07 E-value=0.0056 Score=71.32 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 132 KELVGVECPINEIESLLRT----GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..++|.+...+.+.+.+.. .......+.++|++|+||||||+.++......
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3478888887777654431 11235589999999999999999999987544
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.75 E-value=0.0048 Score=68.49 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+.+.++|++|+|||++|+.+++.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999874
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.66 E-value=0.0033 Score=76.94 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHhhhcCC-------CCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 132 KELVGVECPINEIESLLRTGS-------AGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 458899999988877765211 1234689999999999999999999873
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.63 E-value=0.0052 Score=60.31 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=62.8
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHh--CCCCC--C-------CChhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLL--NDRNV--K-------NSPNI 224 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~--~-------~~~~~ 224 (966)
..|.|++-.|-||||.|-.++-+...+=-.+.++.-.... ...+...+.+.+.-.+. +.... . .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4677777788999999999998876665566666533221 12233333333310000 00000 0 01122
Q ss_pred hHHHHHHHhcCCc-EEEEEecCCCh-----HHHHHHhcccCCCCCCcEEEEEeCch
Q 046086 225 VLNFQSKRFTRKK-VLIVFDDVTHL-----KQIEFLIGRIDWLASGSRIIITTRDK 274 (966)
Q Consensus 225 ~~~~l~~~L~~k~-~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IIiTTR~~ 274 (966)
.....++.+.+.+ =|||||++... -..+.+...+.....+..||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3444555554444 49999998332 11222322222234678999999987
No 252
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0067 Score=61.45 Aligned_cols=46 Identities=24% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..|.+++..+-..-.+++|.|.+|+||||||+.++. ..-..++|+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 345555543334456899999999999999999987 2234566765
No 253
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.50 E-value=0.006 Score=65.51 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=40.1
Q ss_pred CCCcccccc----chHHHHHHhhhcCCC-CceEEEEeecCCCchhHHHHHHHHHhh-ccCCceEEEE
Q 046086 130 DNKELVGVE----CPINEIESLLRTGSA-GVCKLGIWGIGGIGKTTIAGAVFNKTS-RHFEGSYFAH 190 (966)
Q Consensus 130 ~~~~~vGr~----~~l~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 190 (966)
..++|++.+ ..++.+.+++..... ..+.+.|+|++|+|||+||+++++... .+-..+.++.
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345666543 233444555543222 246789999999999999999999876 5544455554
No 254
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.37 E-value=0.0031 Score=66.92 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=44.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
..+++.|+|++|+||||||.+++.. .-..+.|+....+ +. + . . ...+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~e--E~--v-----------~-~--~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFG--EP--L-----------S-G--YNTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBS--CS--S-----------T-T--CBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecch--hh--h-----------h-h--hhcCHHHHHHHHHHHH
Confidence 3457889999999999999999886 2223456653100 00 0 0 0 0023344444555566
Q ss_pred cCCcEEEEEecCCCh
Q 046086 234 TRKKVLIVFDDVTHL 248 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~ 248 (966)
...+ +||+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 5556 9999999653
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.27 E-value=0.0092 Score=60.97 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..+..++..+-..-.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455555322223468999999999999999999976544333455554
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.22 E-value=0.033 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+|+|.|++|+||||+|+.+ ++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.15 E-value=0.028 Score=60.44 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=46.8
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
.|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|++ .......+...+...
T Consensus 49 ~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 49 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred CCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 34455556666666 34344568999999999999999999876654435667765 234455566665544
No 258
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.15 E-value=0.017 Score=62.74 Aligned_cols=101 Identities=18% Similarity=0.072 Sum_probs=59.1
Q ss_pred cchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCC
Q 046086 138 ECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDR 216 (966)
Q Consensus 138 ~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 216 (966)
..-..+|...|. .+-+.-+++.|.|++|+||||||..++......-..++|++.. ..... ..++. +....
T Consensus 43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E----~s~~~-~ra~r----lgv~~ 113 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE----HALDP-VYAKN----LGVDL 113 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----CCCCH-HHHHH----HTCCG
T ss_pred cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----cccch-HHHHH----cCCch
Confidence 344467777775 3334557999999999999999999998766544456777522 11111 12222 22111
Q ss_pred C-----CCCChhhhHHHHHHHhc-CCcEEEEEecCCC
Q 046086 217 N-----VKNSPNIVLNFQSKRFT-RKKVLIVFDDVTH 247 (966)
Q Consensus 217 ~-----~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~ 247 (966)
. ...+.++....+...++ .+.-++|+|.+..
T Consensus 114 ~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 114 KSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 0 22344444455554443 4556889998743
No 259
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.04 E-value=0.016 Score=62.59 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=48.1
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
+.|...-...|.+++. +-..-.++.|.|.+|+||||+|..++.....+=..+.|++ .......+...++...
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 4455555666666663 3334468999999999999999999987655334455654 3345566666665544
No 260
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.96 E-value=0.0087 Score=73.99 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CccccccchHHHHHHhhhcC-----C--CCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 132 KELVGVECPINEIESLLRTG-----S--AGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
..++|.+..++.+...+... . .....+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999999888777531 1 11357899999999999999999997743
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.1 Score=55.32 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=28.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++++++|.+|+||||++..++..+..+-..+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999999999999987765534445544
No 262
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.92 E-value=0.0035 Score=68.28 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=39.7
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 131 NKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.+.++|++..++.+...+..+ +-+.++|++|+|||+||+.+++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999999888887653 258899999999999999999877543
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.041 Score=58.66 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=34.6
Q ss_pred hHHHHHHhhhcC------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 140 PINEIESLLRTG------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 140 ~l~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-.++|.+.+... .....+++|+|.+|+||||++..++..+...-..+.++.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 344555555422 123579999999999999999999987765433344443
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.86 E-value=0.0083 Score=55.19 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=37.0
Q ss_pred EEEecCCCCc--ccc-cccccceEeecCCCCCcccccc-cccccccceecccCCCC
Q 046086 527 YFEWHEFPLK--TLN-IRAENLVSLKLPGSNVEQLWDD-VQNLVNIKEIDLHGSKQ 578 (966)
Q Consensus 527 ~L~l~~~~l~--~lp-~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~ 578 (966)
.++.+++.++ .+| .-+.+|++|+|++|+|+.+|.+ |..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566667776 777 4555778888888888877765 56677777777777754
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.85 E-value=0.026 Score=61.86 Aligned_cols=56 Identities=21% Similarity=0.123 Sum_probs=40.8
Q ss_pred ccccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 135 VGVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 135 vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
-+...-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|++
T Consensus 53 ~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 53 QVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344445567777775 33344568999999999999999999887655445678886
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.82 E-value=0.0044 Score=62.71 Aligned_cols=111 Identities=16% Similarity=0.011 Sum_probs=61.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--CCCChhhhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--VKNSPNIVLNFQSKR 232 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~~l~~~ 232 (966)
-.++.|+|..|.||||++..++.+...+-..+.++...... + +. .++.+.+..... ......+..+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 46889999999999999999999887665555555322111 1 11 111111111100 112223444444444
Q ss_pred hcCC-cEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 233 FTRK-KVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 233 L~~k-~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
+.+. .-+||+|.+.. .++++.+....+ .|-.||+|-++..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 4434 44999999854 345554433222 3788999998553
No 267
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.13 Score=57.31 Aligned_cols=37 Identities=22% Similarity=0.063 Sum_probs=28.9
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..++|.++|.+|+||||++..++..+..+-..+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3679999999999999999999987765533444443
No 268
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.68 E-value=0.032 Score=59.98 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=28.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..++++|+|.+|+||||++..++..+...-..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999999999999999987765433344443
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.65 E-value=0.017 Score=53.09 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=41.3
Q ss_pred EEEccCCCCCc--cccccccCCCCCCCccEEEcCCCCccccch-HhhcCCCCCEEeecCCCC
Q 046086 709 HIEISSCSNLK--RFPEISSSCNREGSTEVLHLKGNNLERIPE-SIRHLSKLKSLDISYCEW 767 (966)
Q Consensus 709 ~L~Ls~~~~l~--~~p~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~ 767 (966)
.++.+++ .+. .+|..+. .+|+.|+|++|+|+.||. .+..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6677763 444 7775432 389999999999999986 468899999999999985
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.65 E-value=0.027 Score=67.70 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccC
Q 046086 131 NKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENG 199 (966)
Q Consensus 131 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 199 (966)
-..+.|.+...++|.+.+... ....+-|.++|++|.|||.+|++++++.... |+....
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~v~~------ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKG------ 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEECCH------
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEEecc------
Confidence 356778888888888776421 1223558899999999999999999986432 332110
Q ss_pred CHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCChH----------------HHHHHhcccCCCCC
Q 046086 200 GLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHLK----------------QIEFLIGRIDWLAS 263 (966)
Q Consensus 200 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~~~ 263 (966)
..++... ...........+...-+..+.+|++|+++... .+..|+..++....
T Consensus 545 ------~~l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 ------PELLTMW-----FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ------HHHHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ------chhhccc-----cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1111111 11122223333344445678999999985321 13344444433333
Q ss_pred Cc--EEEEEeCchhhhhc-----CCcceeEeeccCChhhHHHHHhhhh
Q 046086 264 GS--RIIITTRDKHVLSN-----CLVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 264 gs--~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.. -||-||..+..+.. -.-+..+.++..+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22 33335554433221 1346678888888888888887766
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.54 E-value=0.077 Score=56.31 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=28.2
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~ 190 (966)
..++++|+|.+|+||||++..++..+.. +=..+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3569999999999999999999987763 322444444
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.54 E-value=0.032 Score=57.56 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=26.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh-ccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS-RHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 190 (966)
.-.+++|.|+.|.|||||++.++.... ..-....++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346899999999999999999985322 2334455554
No 273
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.51 E-value=0.14 Score=58.01 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=47.1
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++...... -..++|++ .......+...++...
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 344445556666666 343445689999999999999999999876543 23566664 2344556666666544
Q ss_pred h
Q 046086 213 L 213 (966)
Q Consensus 213 ~ 213 (966)
.
T Consensus 253 ~ 253 (444)
T 2q6t_A 253 A 253 (444)
T ss_dssp T
T ss_pred c
Confidence 3
No 274
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.44 E-value=0.017 Score=62.97 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=66.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEE-EEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYF-AHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFT 234 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 234 (966)
.+++|+|+.|.||||+.+.+...+.......++ +.+..+....... ..................+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHhh
Confidence 489999999999999999998876554333333 2211110000000 000000000111234557888899
Q ss_pred CCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhhh
Q 046086 235 RKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHVL 277 (966)
Q Consensus 235 ~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 277 (966)
..+=+|++|.+.+.+.++.+.... ..|-.||+||-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999877766654432 2466788888877544
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.43 E-value=0.006 Score=74.50 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=84.0
Q ss_pred CCCccccccchHHHHHHhhhcC-----------CCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhcc
Q 046086 130 DNKELVGVECPINEIESLLRTG-----------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQEN 198 (966)
Q Consensus 130 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 198 (966)
....++|.+...++|.+.+... -...+.+.++|++|.||||||+.++......|-. +. .......
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~~~ 550 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELLTM 550 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSSTTC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhhhh
Confidence 3456889999999998877521 1123568899999999999999999987544421 11 0000000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcCCcEEEEEecCCCh----------------HHHHHHhcccCCCC
Q 046086 199 GGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTRKKVLIVFDDVTHL----------------KQIEFLIGRIDWLA 262 (966)
Q Consensus 199 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 262 (966)
............+...-...+.+|++|+++.. ..+..++..++...
T Consensus 551 ------------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 551 ------------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred ------------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 00001111111222222234568889987531 11345555554322
Q ss_pred --CCcEEEEEeCchhhhhcC-----CcceeEeeccCChhhHHHHHhhhh
Q 046086 263 --SGSRIIITTRDKHVLSNC-----LVDQIYEVKELLDVDALKLFSRRA 304 (966)
Q Consensus 263 --~gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 304 (966)
.+..||.||.....+... ..+..+.++..+.++-.+++..+.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 233455566544332221 233467788888888888887766
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.39 E-value=0.0073 Score=58.90 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=22.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998864
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.38 E-value=0.016 Score=60.46 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=63.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
.-.+++|+|+.|.||||+++.+...+...+.+.+++....-......... + +....... +.......+.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----~---v~q~~~gl-~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----I---VNQREVGE-DTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----E---EEEEEBTT-TBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----e---eeHHHhCC-CHHHHHHHHHHHH
Confidence 34689999999999999999998876554455555432100000000000 0 00000000 0122345666777
Q ss_pred cCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchhh
Q 046086 234 TRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKHV 276 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 276 (966)
..++=+|++|...+.+....+.... ..|..|++||-+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6677789999997766555444332 246678888877653
No 278
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.35 E-value=0.011 Score=65.14 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=36.6
Q ss_pred ccccccchHHHHHHhhh-------------cCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 133 ELVGVECPINEIESLLR-------------TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888877762 1111235689999999999999999998874
No 279
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.35 E-value=0.062 Score=56.70 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=34.5
Q ss_pred HHHHHhhh----cCCCCceEEEEeecCCCchhHHHHHHHHHhhccC--CceEEEE
Q 046086 142 NEIESLLR----TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF--EGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 190 (966)
.+|...|. .+-..- ++.|.|.+|+||||||.+++.....++ ..++|++
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 45566665 332333 689999999999999999988766543 4567776
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.32 E-value=0.1 Score=58.16 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=28.9
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..++|+++|.+|+||||++..++..++.+=..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3679999999999999999999987765533444443
No 281
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.016 Score=58.29 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
....+|+|+|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999998765
No 282
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.23 E-value=0.06 Score=58.61 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=39.6
Q ss_pred ccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 137 VECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 137 r~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...-...|..+|. .+-..-+++.|.|.+|+||||||..++......=..++|++
T Consensus 42 i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444556777775 34345678999999999999999999987655445677776
No 283
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.21 E-value=0.021 Score=56.24 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=40.2
Q ss_pred cccCCCCCCEEeccCCCCcc----cccccccCCCCCcEEEccCCCCCcccccc-ccCCCCCCCccEEEcCCC---Ccc--
Q 046086 676 SIECLSKLNSLDIHNCTRLE----YIKSSIFKLKSLKHIEISSCSNLKRFPEI-SSSCNREGSTEVLHLKGN---NLE-- 745 (966)
Q Consensus 676 ~~~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~~p~~-~~~~~~~~~L~~L~Ls~n---~l~-- 745 (966)
.+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|.....--.. ...+..-.+|+.|+|++| .+.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 34444556666666555432 22233334455666666554432110000 011111125666666544 222
Q ss_pred ---ccchHhhcCCCCCEEeecCCC
Q 046086 746 ---RIPESIRHLSKLKSLDISYCE 766 (966)
Q Consensus 746 ---~lp~~i~~l~~L~~L~L~~n~ 766 (966)
.+-..+..-+.|+.|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 233344555666666665543
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.18 E-value=0.027 Score=56.17 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=32.3
Q ss_pred ccchHHHHHHhhhc-CCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 137 VECPINEIESLLRT-GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 137 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
|++.++++.+.+.. ......+|+|.|..|.||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34455555555543 2234578999999999999999999987643
No 285
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.18 E-value=0.18 Score=54.84 Aligned_cols=155 Identities=11% Similarity=-0.032 Sum_probs=95.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh-ccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS-RHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
-.++..++|..|.||++.|+.+.+.+. ..|+....+. . .....+..+.+.+.. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~--------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA--------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH--------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC--------------------cC
Confidence 456899999999999999999998764 3453322121 1 112333333322211 11
Q ss_pred hcCCcEEEEEecCCC---hHHHHHHhcccCCCCCCcEEEEEeCc-------hhhhhc-CCcceeEeeccCChhhHHHHHh
Q 046086 233 FTRKKVLIVFDDVTH---LKQIEFLIGRIDWLASGSRIIITTRD-------KHVLSN-CLVDQIYEVKELLDVDALKLFS 301 (966)
Q Consensus 233 L~~k~~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IIiTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 301 (966)
+-+++-++|+|+++. .+..+.|...+....+++.+|++|.. ..+... ......++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 234555788899865 34566666555555678888877643 123332 2334688999999999988887
Q ss_pred hhhcCCCCCCccHHHHHHHHHHHcCCCchhHHh
Q 046086 302 RRAFGEDDPNASYKELTQEAVKYAKGVPLALKV 334 (966)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~iv~~~~G~PLal~~ 334 (966)
+.+-.... .-..+.+..+++.++|...++..
T Consensus 153 ~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 76632221 11235578889999998876655
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.11 E-value=0.37 Score=54.18 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=44.5
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
.|...-+..|.+++. +-..-.++.|.|.+|+||||+|..++.....+=..+.|++ .......+...++..
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 247 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SSSCTTHHHHHHHHH
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CCCCHHHHHHHHHHH
Confidence 344444555666652 3344568999999999999999999987665433456654 223334455555443
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.11 E-value=0.011 Score=57.27 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=22.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|.|++|+||||+|+.+++++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 288
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.02 E-value=0.064 Score=57.73 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=25.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...+++|+|+.|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999876543
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.90 E-value=0.013 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+.|.|+|++|+||||+|+.+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 290
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.89 E-value=0.052 Score=59.19 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=40.6
Q ss_pred cccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 136 GVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 136 Gr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+...-...|..+|. .+-+.-+++.|.|.+|+||||||..++......-..++|++
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44444566777775 33345578999999999999999999987665545677876
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.014 Score=58.20 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++|+|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998873
No 292
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.81 E-value=0.11 Score=56.53 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 190 (966)
...|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|++
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 45566666544455678999999999999999999886432 224567776
No 293
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.77 E-value=0.016 Score=66.22 Aligned_cols=45 Identities=22% Similarity=0.085 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 132 KELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+.++|++..++.+...+..+ +-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45899999999888877654 3588999999999999999998763
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.76 E-value=0.061 Score=53.47 Aligned_cols=32 Identities=41% Similarity=0.534 Sum_probs=26.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+|+|.|+.|.||||+++.++..+ +.+++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEc
Confidence 34689999999999999999999876 445554
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.71 E-value=0.063 Score=53.59 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=49.1
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe---ehhh-hccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHH
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN---VQEA-QENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKR 232 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 232 (966)
+|.|.|++|+||||.|+.+++++. ...++. .++. .....+....+.. +... .....+.....+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~---~~~G--~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEY---MERG--ELVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHH---HHHT--CCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHH---HhcC--CcCCHHHHHHHHHHh
Confidence 477999999999999999998752 233431 1110 1111111111222 1111 222334556777888
Q ss_pred hcCCcEEEEEecC-CChHHHHHHh
Q 046086 233 FTRKKVLIVFDDV-THLKQIEFLI 255 (966)
Q Consensus 233 L~~k~~LlVLDdv-~~~~~~~~l~ 255 (966)
+..... +|||.. .+..|.+.|.
T Consensus 72 l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 72 FPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CCSSSC-EEEESCCCSHHHHHHHH
T ss_pred hccCCc-eEecCCchhHHHHHHHH
Confidence 866554 688998 5566665553
No 296
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.70 E-value=0.053 Score=58.59 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=35.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc------CCceEEEE
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH------FEGSYFAH 190 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 190 (966)
...|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|++
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 345666664333445689999999999999999998765322 24567776
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.64 E-value=0.03 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.+|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 298
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.078 Score=59.35 Aligned_cols=33 Identities=33% Similarity=0.687 Sum_probs=26.0
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCc-eEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEG-SYFA 189 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~ 189 (966)
.++|+|.+|+|||||+..+......++.. +++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 58999999999999999999876655533 3443
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.58 E-value=0.023 Score=61.13 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=32.2
Q ss_pred ccchHHHHHHhhhc--CCCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 137 VECPINEIESLLRT--GSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 137 r~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
.+...+++.+.+.. .......|.|+|++|.||||+++.++..+...|
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444444444431 223456799999999999999999998766544
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.48 E-value=0.02 Score=55.23 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|+|.|+.|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.034 Score=58.88 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 152 SAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 152 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.....+|+|+|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999887654
No 302
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.077 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|+.|.|||||++.++--+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998643
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.14 Score=57.37 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 190 (966)
..++|.|+|.+|+||||+|..++..+..+ =..+..++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46799999999999999999999887765 33444444
No 304
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.39 E-value=0.14 Score=58.14 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=42.5
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC-CceEEEEeehhhhccCCHHHHHHHHHH
Q 046086 136 GVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF-EGSYFAHNVQEAQENGGLAHLRQQLLS 210 (966)
Q Consensus 136 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 210 (966)
|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++..+.... ..+.|+. .......+...++.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 4444444555555 2333456899999999999999999998765432 3566664 22333455555543
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.36 E-value=0.017 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|+|+.|.||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.31 E-value=0.039 Score=54.95 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.3
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|+|+|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999875
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.29 E-value=0.037 Score=54.34 Aligned_cols=36 Identities=22% Similarity=0.094 Sum_probs=27.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
...+|.|.|++|.||||+|+.++..+...-..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 346899999999999999999999876432223444
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.28 E-value=0.018 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+.|.|+|++|.||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.21 E-value=0.02 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.20 E-value=0.024 Score=55.21 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.6
Q ss_pred eEEEEeecCCCchhHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 311
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.20 E-value=0.12 Score=55.03 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=28.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45699999999999999999999876644 3444443
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.17 E-value=0.12 Score=55.02 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 34689999999999999999999876543 3444443
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.17 E-value=0.032 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+|.|.|++|+||||+|+.+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 314
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.17 E-value=0.024 Score=61.93 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=36.0
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+.++|.+..++.+....... ...-|.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567999988666544433221 223488999999999999999998764
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.16 E-value=0.042 Score=52.74 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=25.2
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999987655
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.14 E-value=0.04 Score=54.19 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.+|.|.|++|+||||+|+.+++++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998764
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.12 E-value=0.022 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
|.|.|+|+.|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999988765444
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.11 E-value=0.022 Score=55.84 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|+|.|++|.||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 319
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.07 E-value=0.023 Score=56.69 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=22.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+|+|.|+.|.||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.04 E-value=0.034 Score=57.33 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=23.2
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999876
No 321
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.00 E-value=0.025 Score=55.27 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 322
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.98 E-value=0.11 Score=56.21 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=24.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
-..++|+|.+|.|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 35799999999999999999988765443
No 323
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.97 E-value=0.03 Score=55.14 Aligned_cols=24 Identities=42% Similarity=0.314 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
..+++|+|++|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.96 E-value=0.042 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+|+|+|+.|.||||+|+.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 325
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.95 E-value=0.16 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|+.|.|||||.+.++-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998644
No 326
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.93 E-value=0.029 Score=58.23 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=22.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.93 E-value=0.027 Score=56.16 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.1
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998775
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.90 E-value=0.031 Score=55.28 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.82 E-value=0.024 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=18.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988764
No 330
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.80 E-value=0.11 Score=57.03 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=62.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
.-.+++|+|+.|.||||+++.+...+.....+.+.+... .. ..... ..+ .-+.... ...+.......++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e~~~~---~~~-~~v~Q~~-~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--EYVFK---HKK-SIVNQRE-VGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--CSCCC---CSS-SEEEEEE-BTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--hhhhc---cCc-eEEEeee-cCCCHHHHHHHHHHHh
Confidence 346899999999999999999998765543445433211 00 00000 000 0000000 0001123355677778
Q ss_pred cCCcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 234 TRKKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 234 ~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
...+=+|++|.+.+.+.+....... ..|..|+.|+-+..
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 7788899999998777665544332 34666777776543
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.79 E-value=0.046 Score=53.76 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.+++|+|+.|.|||||++.++.. ..+.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999763 33445654
No 332
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.78 E-value=0.027 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|+|.|++|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.76 E-value=0.036 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
....|+|+|++|+||||+|+.++++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999987
No 334
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.74 E-value=0.16 Score=55.22 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 4689999999999999999999876643 3444443
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.74 E-value=0.054 Score=57.97 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++.++|+|.|-|||||||.|..++.-+...=..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999999887766545566565
No 336
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.73 E-value=0.05 Score=60.81 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHhhhcC------------CCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 132 KELVGVECPINEIESLLRTG------------SAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 132 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..++|.+..++.+...+... ....+-|.++|++|+||||+|+.++..+...|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 35788888777776655210 11235689999999999999999999875433
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.73 E-value=0.055 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
.+|+|.|++|+||||+|+.+++++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999999876543
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.71 E-value=0.038 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....+|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999875
No 339
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.68 E-value=0.25 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.292 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|+.|.|||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998654
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.67 E-value=0.033 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.8
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.66 E-value=0.055 Score=54.30 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=25.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
..+|+|.|+.|+||||+|+.+++++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999876543
No 342
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.60 E-value=0.038 Score=55.39 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.2
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
..++|+|+|+.|+|||||++.+...+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999987643
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.60 E-value=0.038 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=22.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+|+|.|++|+||||+|+.+++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.59 E-value=0.038 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.|+|.|++|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 345
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.56 E-value=0.054 Score=53.37 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=32.0
Q ss_pred cchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 138 ECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 138 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
..-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+..
T Consensus 42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446667776653 233457999999999999999999987743
No 346
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.55 E-value=0.071 Score=57.59 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=59.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHhcC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRFTR 235 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 235 (966)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+..... .. +.+ .+.. .........+...|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~---~~i--~~~~-----ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HK---NYT--QLFF-----GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CS---SEE--EEEC-----BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-ch---hEE--EEEe-----CCChhHHHHHHHHhhh
Confidence 47999999999999999999876543 35666665432111000 00 000 0000 0122345567777888
Q ss_pred CcEEEEEecCCChHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 236 KKVLIVFDDVTHLKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 236 k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
++=+|++|++...+.++.+.. .. ..+..+|+||....
T Consensus 240 ~p~ilildE~~~~e~~~~l~~-~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNV-LC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHH-HH--TTCCCEEEEEECSS
T ss_pred CCCEEEEcCCChHHHHHHHHH-Hh--cCCCEEEEEEcccH
Confidence 888999999987655554432 22 11223566665443
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.52 E-value=0.038 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=22.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..|+|.|++|+||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 348
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.51 E-value=0.07 Score=52.50 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=60.2
Q ss_pred ccCCCCCCEEeccCC-CCcc----cccccccCCCCCcEEEccCCCCCcc----ccccccCCCCCCCccEEEcCCCCcc--
Q 046086 677 IECLSKLNSLDIHNC-TRLE----YIKSSIFKLKSLKHIEISSCSNLKR----FPEISSSCNREGSTEVLHLKGNNLE-- 745 (966)
Q Consensus 677 ~~~l~~L~~L~L~~n-~~~~----~~p~~l~~l~~L~~L~Ls~~~~l~~----~p~~~~~~~~~~~L~~L~Ls~n~l~-- 745 (966)
+.+-+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|..... +.+.+..- .+|+.|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N---~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS---PSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC---SSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC---CccCeEecCCCcCCHH
Confidence 455678999999886 4432 3455667778999999999765421 22222222 28999999999987
Q ss_pred ---ccchHhhcCCCCCEEeecCCC
Q 046086 746 ---RIPESIRHLSKLKSLDISYCE 766 (966)
Q Consensus 746 ---~lp~~i~~l~~L~~L~L~~n~ 766 (966)
.|-..+..-+.|++|+|++|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHHhhCCceeEEECCCCc
Confidence 344566667789999998764
No 349
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.50 E-value=0.22 Score=56.09 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35689999999999999999999876543 4455553
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.47 E-value=0.035 Score=55.43 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999998764
No 351
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.45 E-value=0.1 Score=56.22 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...|..+|..+-..-.++.|.|.+|+||||+|..++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666664333445789999999999999999998753
No 352
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.45 E-value=0.033 Score=54.74 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5799999999999999999998765444
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.42 E-value=0.25 Score=56.81 Aligned_cols=55 Identities=9% Similarity=-0.078 Sum_probs=38.9
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQQLLSTLL 213 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 213 (966)
..-.++.|.|.+|+||||+|..++.....+ =..++|++ .......+...++....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHN 295 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHc
Confidence 445689999999999999999999877654 34567765 23344566666655443
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.39 E-value=0.045 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|.|++|+||||+|+.+++++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.38 E-value=0.051 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|.|++|+||||+|+.+++++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999998763
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.30 E-value=0.041 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.9
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...|.|.|++|+||||+|+.+++++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 357
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.24 E-value=0.072 Score=54.70 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 144 IESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 144 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
|.++|..+-..-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444333234468999999999999999998876654445667765
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.24 E-value=0.05 Score=54.08 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.20 E-value=0.047 Score=54.71 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=24.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999987644
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.18 E-value=0.049 Score=56.45 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
....+|+|.|++|.||||+|+.+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34568999999999999999999987643
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.15 E-value=0.055 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999876
No 362
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.14 E-value=0.045 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=20.4
Q ss_pred eEEEEeecCCCchhHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
.+|+|+|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.10 E-value=0.049 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997743
No 364
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.086 Score=53.99 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 190 (966)
..|..+|..+-..-.+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 4555666433334568999999999999999999885322 135677776
No 365
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.07 E-value=0.048 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.04 E-value=0.05 Score=53.70 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...+|+|+|+.|.||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998864
No 367
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.01 E-value=0.1 Score=52.98 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 190 (966)
..|...+..+-..-.+++|+|+.|.|||||++.++..... .-...+|+.
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 3454555333234568999999999999999999874432 123466665
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.91 E-value=0.055 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 369
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.91 E-value=0.13 Score=56.15 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 143 EIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 143 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
++.+.+........+|+|+|.+|+|||||+..++..+...-..+..+
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 33333433335678999999999999999999988765443334433
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.91 E-value=0.052 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998654
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.89 E-value=0.049 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=23.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.85 E-value=0.09 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 373
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.83 E-value=0.074 Score=62.83 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCCccccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 129 NDNKELVGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 129 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
.....++|.+..++.+...+..+ +.+.|+|++|+||||||+.++..+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34567899999999888888654 4799999999999999999998765443
No 374
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.82 E-value=0.19 Score=56.18 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=28.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++|+|+|.+|+||||+|..++..+..+-..+.+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999987764433444443
No 375
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.82 E-value=0.056 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...+|+|+|++|.||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998754
No 376
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.76 E-value=0.054 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.9
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 377
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.75 E-value=0.059 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|+|+.|.||||+++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.74 E-value=0.051 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...|+|.|++|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 379
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.74 E-value=0.3 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|..|.|||||.+.++--+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998643
No 380
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.72 E-value=0.052 Score=54.20 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEeecCCCchhHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 381
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.69 E-value=0.061 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..+++|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998866
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.69 E-value=0.049 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 383
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.69 E-value=0.28 Score=54.21 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=34.9
Q ss_pred chHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhc------cCCceEEEE
Q 046086 139 CPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSR------HFEGSYFAH 190 (966)
Q Consensus 139 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 190 (966)
.-+..|..+|..+-..-.++.|+|.+|+|||||+..++-.... .-..++|++
T Consensus 162 TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3345666666443344568999999999999999987643221 224477776
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.68 E-value=0.11 Score=50.59 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
..+|+|.|+.|.||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999999987643
No 385
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.68 E-value=0.071 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=23.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|+|+|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988664
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.66 E-value=0.06 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 387
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.60 E-value=0.065 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 388
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.58 E-value=0.26 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=23.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
..++|.|.+|+|||+|+..+++.+...
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 468999999999999999999976543
No 389
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.57 E-value=0.17 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.8
Q ss_pred EEEEeecCCCchhHHHHHHHHH
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999886544
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.54 E-value=0.16 Score=51.23 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 141 INEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 141 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.+++...+.. ...+.|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 356789999999999999999998865443
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.51 E-value=0.065 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.48 E-value=0.093 Score=56.13 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=33.5
Q ss_pred cccccchHHHHHHhhhcC--CCCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 134 LVGVECPINEIESLLRTG--SAGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|-...+..+...+... .....+|+|.|..|.||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555565555544332 34466899999999999999999987665
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.46 E-value=0.12 Score=52.08 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=31.3
Q ss_pred cchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 138 ECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 138 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
+...+++.+.+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444455554432 356889999999999999999998876544
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.44 E-value=0.063 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.42 E-value=0.046 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 396
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.41 E-value=0.26 Score=55.03 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998765
No 397
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.37 E-value=0.43 Score=53.26 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=34.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc-CCceEEEEeehhhhccCCHHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH-FEGSYFAHNVQEAQENGGLAHLRQQLLS 210 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 210 (966)
..++|.|.+|+|||+|+..+++.+... -+.++|+ .+.+. ......+.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER--TREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC--HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc--chHHHHHHHHhhh
Confidence 468999999999999999999876433 3445554 34332 2234455555544
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.36 E-value=0.067 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=22.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..|.|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.29 E-value=0.063 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.28 E-value=0.65 Score=53.65 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++...|..+-..-.+++|.|.+|+|||||++.++......=..++++.
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444555432233458999999999999999999986654322344553
No 401
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.17 E-value=0.068 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|.|+.|.||||+++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998763
No 402
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.09 E-value=0.061 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred ceEEEEeecCCCchhHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVF 176 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~ 176 (966)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999643
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.04 E-value=0.085 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 404
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.02 E-value=0.072 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987653
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.02 E-value=0.082 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=22.2
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.92 E-value=0.083 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.8
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 407
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.91 E-value=1.2 Score=46.66 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=34.1
Q ss_pred hHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccC
Q 046086 5 SESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPS 60 (966)
Q Consensus 5 ~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps 60 (966)
..++.+.++++.+.|.|+.-.-..+..+ .++.+++ ++..++-|+=|+|--
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKADKA 63 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGGGS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcccC
Confidence 3578899999999999998776666665 2455554 233455565566653
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.80 E-value=0.094 Score=55.27 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.77 E-value=0.092 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=21.1
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.72 E-value=0.094 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=23.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999998864
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.69 E-value=0.079 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|.|.|++|.||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998764
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.68 E-value=0.068 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.++|.|+|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998753
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.65 E-value=0.093 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEeecCCCchhHHHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 414
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.58 E-value=0.11 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
...+|+|.|+.|.|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998865
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.55 E-value=0.079 Score=56.08 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.51 E-value=0.086 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998753
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.50 E-value=0.87 Score=51.80 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=27.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
..++|+|+|.+|+||||++..++..+..+=..+..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4678999999999999999999987765433344444
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.45 E-value=0.097 Score=53.18 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
..+|+|.|++|.||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 419
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.40 E-value=0.17 Score=48.81 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=24.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
.++++|.|..|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5789999999999999999999876543
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.28 E-value=0.12 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 421
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.26 E-value=0.12 Score=55.21 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
....+|+|.|..|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 44579999999999999999999886653
No 422
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.26 E-value=0.18 Score=52.57 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.2
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999998775544555555
No 423
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.23 E-value=0.18 Score=53.51 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=28.5
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCC-ceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFE-GSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 190 (966)
.-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3458999999999999999999987664433 455554
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.23 E-value=0.17 Score=54.02 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...++|+|+|-||+||||+|..++..+..+=..+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678999999999999999999987776544555555
No 425
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.15 E-value=0.1 Score=52.18 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
-.+++|+|+.|.|||||++.+...+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987653
No 426
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.13 E-value=0.19 Score=47.72 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..-.+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344689999999999999999999866
No 427
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.10 E-value=0.54 Score=52.68 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=35.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc-cCCceEEEEeehhhhccCCHHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR-HFEGSYFAHNVQEAQENGGLAHLRQQLLS 210 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 210 (966)
..++|.|.+|+|||+|+..+++.+.. +-+.++|+. +.+ +.....++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 45899999999999999999997644 345666653 433 22234455555543
No 428
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.08 E-value=0.15 Score=52.34 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=30.5
Q ss_pred HHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh-hccCCceEEEE
Q 046086 145 ESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT-SRHFEGSYFAH 190 (966)
Q Consensus 145 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 190 (966)
.++|..+-..-.++.|.|.+|+||||+|.+++... ...-..++|+.
T Consensus 20 D~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 33443332344689999999999999999987643 33334555654
No 429
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.05 E-value=0.32 Score=48.34 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=55.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--CCCChhhhHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN--VKNSPNIVLNFQSK 231 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~~~~~l~~ 231 (966)
.-.+..++|..|.||||.|...+.+...+-..++.+.... ..+.+...+. +.+..... ......+. .+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~~i~----s~~g~~~~a~~~~~~~~~----~~ 96 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEEDVV----SHNGLKVKAVPVSASKDI----FK 96 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGGGG----GG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHHHHH----hhcCCeeEEeecCCHHHH----HH
Confidence 3468889999999999999999888765554555543221 1112222222 22211111 11111111 12
Q ss_pred HhcCCcEEEEEecCCC--hHHHHHHhcccCCCCCCcEEEEEeCchh
Q 046086 232 RFTRKKVLIVFDDVTH--LKQIEFLIGRIDWLASGSRIIITTRDKH 275 (966)
Q Consensus 232 ~L~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 275 (966)
...++--+|++|.+.- .++++.+....+ .|-.||+|-++..
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 2223334999999833 345544433112 4779999999654
No 430
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.00 E-value=0.093 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.3
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998765
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.98 E-value=0.2 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.4
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...++.+.|.||+||||++..++..+. +-..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 456889999999999999999998776 333344443
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.97 E-value=0.11 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.0
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 579999999999999999999865
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.87 E-value=0.22 Score=54.23 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..|..+|..+-..-+++.|+|.+|+|||||++.++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555554443456799999999999999999998866
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.87 E-value=0.17 Score=55.50 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=24.5
Q ss_pred CCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 151 GSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 151 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+-+..++++|+|++|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33455789999999999999999999754
No 435
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.85 E-value=0.24 Score=65.09 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHHhCCCC--
Q 046086 141 INEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTLLNDRN-- 217 (966)
Q Consensus 141 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-- 217 (966)
..+|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|++.. ....... ...+..+-.
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e----~~~~~l~-----a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE----HALDPIY-----ARKLGVDIDNL 1482 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT----SCCCHHH-----HHHTTCCTTTC
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc----cccCHHH-----HHHcCCCchhc
Confidence 345666665 3334567899999999999999999998776655567777521 1111111 122221100
Q ss_pred ---CCCChhhhHHHHHHHh-cCCcEEEEEecCC
Q 046086 218 ---VKNSPNIVLNFQSKRF-TRKKVLIVFDDVT 246 (966)
Q Consensus 218 ---~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~ 246 (966)
.....+.....+++.. ..+.-+||+|.++
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1223334444444443 3566799999984
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.81 E-value=0.14 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
....+|+|.|+.|.||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999876
No 437
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.78 E-value=0.21 Score=52.80 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=28.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.++|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999987765533455554
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.67 E-value=0.21 Score=50.05 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=25.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
.|.+.|.||+||||+|..++.....+-..+.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4788999999999999999987765433344443
No 439
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.67 E-value=0.12 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHhh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.46 E-value=0.094 Score=50.57 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.5
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876543
No 441
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.43 E-value=0.14 Score=51.71 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988764
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.42 E-value=0.14 Score=53.91 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=23.1
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHh
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
..++|.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999875
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.41 E-value=0.1 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=16.4
Q ss_pred ceEEEEeecCCCchhHHHHHHH-HHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVF-NKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 179 (966)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 654
No 444
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.34 E-value=0.27 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=24.3
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999988765
No 445
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.22 E-value=0.24 Score=52.40 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=27.7
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
..++++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356899999999999999999998776543334443
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.13 E-value=0.25 Score=51.91 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=23.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.-.+++|+|.+|+||||||..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999875543
No 447
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.11 E-value=0.27 Score=50.73 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 142 NEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 142 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.-+..++....+....+.++|++|.|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566665432334579999999999999999999853
No 448
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.08 E-value=0.19 Score=57.31 Aligned_cols=28 Identities=4% Similarity=-0.041 Sum_probs=24.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
...+|.+.|+.|.||||+|+++++++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998864
No 449
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.01 E-value=0.4 Score=51.95 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
....+|+|+|.+|+||||++..+...+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998766543
No 450
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.98 E-value=0.26 Score=48.13 Aligned_cols=26 Identities=23% Similarity=-0.147 Sum_probs=21.8
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
+++.|+|+.|.||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999888776543
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.93 E-value=0.15 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998864
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.90 E-value=0.16 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=21.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.+|.|.|++|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 453
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.88 E-value=0.39 Score=47.45 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=26.9
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
.|+|-|.-|+||||.++.+++.+..+-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887765444444
No 454
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.70 E-value=0.18 Score=48.85 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=23.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++.|+|.+|.||||+|.+++.+ . ..++|+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 3789999999999999999865 2 3456665
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.68 E-value=0.19 Score=51.03 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.8
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
...+|+|.|+.|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998765
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.57 E-value=1.4 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998763
No 457
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.55 E-value=0.99 Score=46.70 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=64.0
Q ss_pred chHHHHHHHHhccEEEEEecCCcCChhhhHHHHHHHHHhhhcCCCEEEeEeeecccCccccccccchhhHHHHHhhChhh
Q 046086 4 ISESLLDAIEASTISIIIFSERYASSRWCLDELLKILECKHDYGQIVIPVFYGVDPSHVRWQTGIFGNLFSKLEERFPEM 83 (966)
Q Consensus 4 i~~~l~~ai~~s~~~v~v~S~~y~~S~wcl~el~~i~~~~~~~~~~v~pify~vdps~vr~~~g~~~~~~~~~~~~~~~~ 83 (966)
...++.+.++++.+.|.|++-+-..+..+. ++. ++ +...+-|+=|.|--+- +.
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll------~k~~iivlNK~DL~~~-------------------~~ 63 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS------RKETIILLNKVDIADE-------------------KT 63 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT------TSEEEEEEECGGGSCH-------------------HH
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc------CCCcEEEEECccCCCH-------------------HH
Confidence 346889999999999999987766666553 122 22 3455666656664321 12
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhhhhcccccccCCCCccccccchHHHHHHhhhcCCCCceEEEEeec
Q 046086 84 RKRWRNALTEAANLSGFNSHVIRPESKLIEEIADEVLKRLDDTFENDNKELVGVECPINEIESLLRTGSAGVCKLGIWGI 163 (966)
Q Consensus 84 ~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~ 163 (966)
.+.|.+.+++.. ..-+.+. ..- .-+++|.+.+... ...++++|.
T Consensus 64 ~~~~~~~~~~~g-~~v~iSa----------------------------~~~----~gi~~L~~~l~~~---~~~v~~vG~ 107 (262)
T 3cnl_A 64 TKKWVEFFKKQG-KRVITTH----------------------------KGE----PRKVLLKKLSFDR---LARVLIVGV 107 (262)
T ss_dssp HHHHHHHHHHTT-CCEEECC----------------------------TTS----CHHHHHHHHCCCT---TCEEEEEES
T ss_pred HHHHHHHHHHcC-CeEEEEC----------------------------CCC----cCHHHHHHHHHHh---hhheEEeCC
Confidence 456666554311 0001111 000 1133444444211 046899999
Q ss_pred CCCchhHHHHHHHH
Q 046086 164 GGIGKTTIAGAVFN 177 (966)
Q Consensus 164 gGiGKTtLA~~v~~ 177 (966)
+|+|||||...+..
T Consensus 108 ~~vGKSslin~l~~ 121 (262)
T 3cnl_A 108 PNTGKSTIINKLKG 121 (262)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999988875
No 458
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.46 E-value=0.2 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=23.3
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
.+|.|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 459
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.44 E-value=0.17 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.117 Sum_probs=20.8
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.+++|+|+.|.|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 460
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.29 E-value=0.3 Score=56.16 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=25.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccC
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHF 183 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 183 (966)
...+|.++|++|.||||+|+.++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998876554
No 461
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.27 E-value=0.19 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.. .+++|+|+.|.|||||.+.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999864
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.26 E-value=0.21 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.2
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 463
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.17 E-value=0.3 Score=48.35 Aligned_cols=35 Identities=23% Similarity=0.111 Sum_probs=27.6
Q ss_pred eEEEEe-ecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 156 CKLGIW-GIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 156 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578887 57999999999999998776544566665
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.11 E-value=0.22 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTS 180 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~ 180 (966)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5799999999999999999998764
No 465
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.99 E-value=0.21 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.97 E-value=0.23 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 467
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.82 E-value=0.53 Score=50.86 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.8
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhhc
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
....+++|+|.+|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45678999999999999999999876544
No 468
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.78 E-value=0.22 Score=50.27 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhccCCceEEEEe---ehhhhccCCHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHh
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHN---VQEAQENGGLAHLRQQLLSTLLNDRNVKNSPNIVLNFQSKRF 233 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 233 (966)
.+||.|++|+||||+|+.+++++. ..+++. +++...... .+-+++ .+.... ......+.....+++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g-----~~~is~gdllR~~~~~~t--~lG~~i-~~~~~~-G~lvpdei~~~ll~~~l 80 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG-----IPQISTGDMLRAAVKAGT--PLGVEA-KTYMDE-GKLVPDSLIIGLVKERL 80 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-----CCEECHHHHHHHHHHTTC--HHHHHH-HHHHTT-TCCCCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC-----CCeeechHHHHHhccCCC--hHHHHH-HHHHhh-ccccccHHHHHHHHHHH
Confidence 589999999999999999998763 223321 111101111 111222 222222 12223334556667766
Q ss_pred cC---CcEEEEEecC-CChHHHHHHh
Q 046086 234 TR---KKVLIVFDDV-THLKQIEFLI 255 (966)
Q Consensus 234 ~~---k~~LlVLDdv-~~~~~~~~l~ 255 (966)
.. ++ =+|||.. .+..|.+.|.
T Consensus 81 ~~~~~~~-g~ILDGfPRt~~Qa~~L~ 105 (230)
T 3gmt_A 81 KEADCAN-GYLFDGFPRTIAQADAMK 105 (230)
T ss_dssp HSGGGTT-CEEEESCCCSHHHHHHHH
T ss_pred hCcccCC-CeEecCCCCcHHHHHHHH
Confidence 43 12 2467998 5567776664
No 469
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.77 E-value=0.73 Score=60.60 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=62.8
Q ss_pred ccccccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHH
Q 046086 133 ELVGVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLST 211 (966)
Q Consensus 133 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 211 (966)
...+...-..+|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|++.- .....+. ...
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E------~s~~~~~---a~~ 430 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE------HALDPIY---ARK 430 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT------SCCCHHH---HHH
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC------CCHHHHH---HHH
Confidence 34556666677888875 3334567899999999999999999998776554567777521 1111111 222
Q ss_pred HhCCCC-----CCCChhhhHHHHHHHh-cCCcEEEEEecC
Q 046086 212 LLNDRN-----VKNSPNIVLNFQSKRF-TRKKVLIVFDDV 245 (966)
Q Consensus 212 l~~~~~-----~~~~~~~~~~~l~~~L-~~k~~LlVLDdv 245 (966)
+..... ...+.++..+.++... ..+.-+||+|.+
T Consensus 431 lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred cCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 221111 2234445555554333 345669999987
No 470
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.73 E-value=0.57 Score=60.75 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=60.8
Q ss_pred cccccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..+...-..+|..++. .+-..-.++.|.|.+|+||||||..++.....+-..+.|++.- .....+. ...+
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E------es~~ql~---A~~l 780 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE------HALDPIY---ARKL 780 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT------SCCCHHH---HHHT
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc------chHHHHH---HHHc
Confidence 3445555667777775 3334456899999999999999999998776544456676521 1111221 1222
Q ss_pred hCCC-----CCCCChhhhHHHHHHHh-cCCcEEEEEecCCC
Q 046086 213 LNDR-----NVKNSPNIVLNFQSKRF-TRKKVLIVFDDVTH 247 (966)
Q Consensus 213 ~~~~-----~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~ 247 (966)
.... ....+.++....+++.. ..+.-+||+|.+..
T Consensus 781 Gvd~~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 781 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp TCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred CCChhheEEecCCcHHHHHHHHHHHHHccCCCEEEEechhh
Confidence 1110 01224444444444333 24566999999843
No 471
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.72 E-value=0.18 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=21.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||.+.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.72 E-value=0.34 Score=48.16 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.1
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCC
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFE 184 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 184 (966)
+.|+|-|..|+||||+++.+++.+.+.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999998875544
No 473
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.68 E-value=2.3 Score=43.06 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=17.5
Q ss_pred eEEEEeecCCCchhHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVF 176 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~ 176 (966)
+.+.|.|..|.||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998766554
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.62 E-value=0.64 Score=46.46 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.7
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
...|.|.|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999988654
No 475
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.37 E-value=0.19 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||.+.++--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999998753
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.32 E-value=0.92 Score=58.87 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=61.9
Q ss_pred cccccchHHHHHHhhh-cCCCCceEEEEeecCCCchhHHHHHHHHHhhccCCceEEEEeehhhhccCCHHHHHHHHHHHH
Q 046086 134 LVGVECPINEIESLLR-TGSAGVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAHNVQEAQENGGLAHLRQQLLSTL 212 (966)
Q Consensus 134 ~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 212 (966)
..+...-...|..+|. .+-+.-+++.|.|.+|+||||||.+++......-..++|++.- .... .+. ...+
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E----~s~~--~~~---a~~l 431 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE----HALD--PIY---ARKL 431 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT----SCCC--HHH---HHHT
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc----CchH--HHH---HHHc
Confidence 3444555667777775 3334567899999999999999999998766555677787621 1111 111 2222
Q ss_pred hCCCC-----CCCChhhhHHHHHHHh-cCCcEEEEEecCC
Q 046086 213 LNDRN-----VKNSPNIVLNFQSKRF-TRKKVLIVFDDVT 246 (966)
Q Consensus 213 ~~~~~-----~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~ 246 (966)
..... ...+.++....++... ..+.-+||+|.+.
T Consensus 432 Gvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp TCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred CCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 21110 2234444444444433 3455699999984
No 477
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.24 E-value=0.21 Score=51.42 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=25.4
Q ss_pred eEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
.+++|+|+.|.|||||.+.++--+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 479999999999999999998765443 55544
No 478
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.15 E-value=0.26 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEeecCCCchhHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999976
No 479
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.14 E-value=0.22 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHHh
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
.+|+|.|+.|.||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 369999999999999999998865
No 480
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.00 E-value=0.76 Score=50.95 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred EEEEeecCCCchhHHHHHHHHHhhc
Q 046086 157 KLGIWGIGGIGKTTIAGAVFNKTSR 181 (966)
Q Consensus 157 vv~I~G~gGiGKTtLA~~v~~~~~~ 181 (966)
.++|.|.+|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4789999999999999999887654
No 481
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.93 E-value=0.35 Score=49.60 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=26.5
Q ss_pred EEEeecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 158 LGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 158 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 666999999999999999998876544555555
No 482
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.93 E-value=0.39 Score=46.84 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998864
No 483
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.90 E-value=0.38 Score=50.93 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHh
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
+.-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445689999999999999999998765
No 484
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.89 E-value=2 Score=46.98 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=29.0
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeecCCCchhHHHHHHHHH
Q 046086 135 VGVECPINEIESLLRTGSAGVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 135 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.|.+.-++.+.+.+. .+.++++|.+|+|||||...+...
T Consensus 147 ~gi~~L~~~I~~~~~-----~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYRE-----GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHHT-----TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc-----cCcEEEEcCCCCchHHHHHHHHhh
Confidence 455555566655542 245899999999999999999876
No 485
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.88 E-value=0.43 Score=52.43 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCceEEEEee-cCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 153 AGVCKLGIWG-IGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
...++|+|+| -||+||||+|..++..+..+-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578899986 9999999999999988776544566665
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.85 E-value=0.27 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 487
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.79 E-value=0.22 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 488
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.79 E-value=0.25 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||.+.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 489
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.73 E-value=1.4 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.2
Q ss_pred CCceEEEEeecCCCchhHHHHHHHH
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFN 177 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~ 177 (966)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999988774
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.69 E-value=0.48 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=28.0
Q ss_pred CceEEEEeecCCCchhHHHHHHHHHhhccCCceEEE
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNKTSRHFEGSYFA 189 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 189 (966)
..++++|+|.+|+||||++..++..+..+-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357899999999999999999998776553333443
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.59 E-value=0.26 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 492
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.57 E-value=0.23 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred CceEEEEeecCCCchhHHHHHHHHH
Q 046086 154 GVCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 154 ~~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.-.+++|+|+.|.|||||.+.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998764
No 493
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.56 E-value=0.21 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEEeecCCCchhHHHHHHHHH
Q 046086 156 CKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 156 ~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
.+++|+|+.|.|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999764
No 494
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.53 E-value=0.54 Score=50.89 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCceEEEEeecCCCchhHHHHHHHHHhh--ccCCceEEEE
Q 046086 153 AGVCKLGIWGIGGIGKTTIAGAVFNKTS--RHFEGSYFAH 190 (966)
Q Consensus 153 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 190 (966)
...+++.+.|.||+||||+|..++..+. ..=..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4568899999999999999999998887 5544555554
No 495
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.48 E-value=0.23 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||.+.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999853
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.45 E-value=0.35 Score=55.85 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHhhcc
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKTSRH 182 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 182 (966)
-.+++|+|+.|.|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 4689999999999999999999987643
No 497
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.43 E-value=0.23 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCchhHHHHHHHHHh
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNKT 179 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~~ 179 (966)
-.+++|+|+.|.|||||++.++--+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999998643
No 498
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.42 E-value=1.2 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCchhHHHHHHHHH
Q 046086 155 VCKLGIWGIGGIGKTTIAGAVFNK 178 (966)
Q Consensus 155 ~~vv~I~G~gGiGKTtLA~~v~~~ 178 (966)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999988753
No 499
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.39 E-value=0.5 Score=47.10 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=25.9
Q ss_pred EEEEe-ecCCCchhHHHHHHHHHhhccCCceEEEE
Q 046086 157 KLGIW-GIGGIGKTTIAGAVFNKTSRHFEGSYFAH 190 (966)
Q Consensus 157 vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 190 (966)
+|+|+ +-||+||||+|..++..+..+- .+..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 46665 6899999999999999887665 566665
No 500
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.36 E-value=0.58 Score=47.77 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=28.7
Q ss_pred CceEEEEee-cCCCchhHHHHHHHHHhhcc-CCceEEEE
Q 046086 154 GVCKLGIWG-IGGIGKTTIAGAVFNKTSRH-FEGSYFAH 190 (966)
Q Consensus 154 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 190 (966)
..++|+|+| -||+||||+|..++..+..+ =..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 457788876 69999999999999988776 44555555
Done!