Query 046088
Match_columns 193
No_of_seqs 166 out of 461
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8n_G Core histone macro-H2A. 100.0 2.1E-47 7.1E-52 299.6 9.5 110 82-192 9-119 (120)
2 1f66_C Histone H2A.Z; nucleoso 100.0 3.2E-47 1.1E-51 301.6 8.5 111 82-192 14-124 (128)
3 1id3_C Histone H2A.1; nucleoso 100.0 2.2E-46 7.6E-51 297.7 11.7 110 82-192 12-122 (131)
4 1tzy_A Histone H2A-IV; histone 100.0 3.6E-46 1.2E-50 295.8 9.6 110 82-192 12-122 (129)
5 2nqb_C Histone H2A; nucleosome 100.0 7.3E-46 2.5E-50 291.9 9.6 110 82-192 10-120 (123)
6 2f8n_K Histone H2A type 1; nuc 100.0 4.2E-45 1.4E-49 296.3 9.0 110 82-192 31-141 (149)
7 2jss_A Chimera of histone H2B. 100.0 9E-38 3.1E-42 260.1 9.7 99 84-182 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 1.3E-27 4.4E-32 236.4 7.2 102 84-187 93-194 (1049)
9 1jfi_A Transcription regulator 99.9 9.9E-24 3.4E-28 159.3 6.7 82 88-170 4-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 4.8E-19 1.6E-23 133.1 8.7 78 91-169 15-92 (97)
11 4g92_C HAPE; transcription fac 99.8 1.2E-18 4.2E-23 135.5 8.4 76 93-169 39-114 (119)
12 2byk_A Chrac-16; nucleosome sl 99.7 4.6E-17 1.6E-21 130.4 6.7 85 84-169 8-93 (140)
13 1tzy_D Histone H4-VI; histone- 99.6 6.9E-16 2.4E-20 117.1 7.8 77 82-162 18-94 (103)
14 2yfw_B Histone H4, H4; cell cy 99.6 7.3E-16 2.5E-20 117.1 7.0 78 82-163 18-95 (103)
15 1f1e_A Histone fold protein; a 99.2 1.1E-11 3.6E-16 100.9 6.8 71 90-162 77-147 (154)
16 1b67_A Protein (histone HMFA); 98.9 2.4E-09 8.1E-14 74.7 7.1 65 95-161 2-66 (68)
17 1ku5_A HPHA, archaeal histon; 98.8 6.8E-09 2.3E-13 73.1 7.1 65 95-161 6-70 (70)
18 1id3_B Histone H4; nucleosome 98.7 2.7E-08 9.2E-13 75.5 7.8 75 84-162 19-93 (102)
19 1n1j_A NF-YB; histone-like PAI 98.5 2.1E-07 7.2E-12 68.6 6.9 69 92-160 5-73 (93)
20 3b0c_W CENP-W, centromere prot 98.3 1.1E-06 3.9E-11 62.8 6.7 65 95-160 4-68 (76)
21 2byk_B Chrac-14; nucleosome sl 98.3 5.8E-07 2E-11 70.6 5.3 75 93-168 7-82 (128)
22 1f1e_A Histone fold protein; a 98.1 6.7E-06 2.3E-10 66.7 7.0 64 95-159 4-67 (154)
23 2hue_C Histone H4; mini beta s 98.1 1.2E-05 4E-10 58.6 7.4 71 88-162 5-75 (84)
24 1taf_B TFIID TBP associated fa 97.9 4E-05 1.4E-09 54.9 7.2 65 94-160 5-69 (70)
25 3b0c_T CENP-T, centromere prot 97.6 6.7E-05 2.3E-09 57.5 4.9 71 93-165 5-75 (111)
26 1jfi_B DR1 protein, transcript 97.6 0.00015 5.1E-09 60.2 7.0 77 91-169 11-87 (179)
27 1taf_A TFIID TBP associated fa 97.1 0.0017 6E-08 46.0 7.1 60 100-161 6-65 (68)
28 2nqb_D Histone H2B; nucleosome 97.1 0.001 3.5E-08 52.4 6.3 61 99-160 37-97 (123)
29 1tzy_B Histone H2B; histone-fo 97.0 0.0015 5.2E-08 51.6 6.7 65 94-160 36-100 (126)
30 4dra_A Centromere protein S; D 97.0 0.0011 3.9E-08 51.4 5.5 79 91-171 26-104 (113)
31 3v9r_A MHF1, uncharacterized p 96.9 0.0025 8.7E-08 47.5 6.7 78 91-171 11-89 (90)
32 3b0b_B CENP-S, centromere prot 96.8 0.0015 5.2E-08 50.1 5.1 80 90-171 17-96 (107)
33 2hue_B Histone H3; mini beta s 96.8 0.0036 1.2E-07 45.5 6.8 66 95-160 3-71 (77)
34 3nqj_A Histone H3-like centrom 96.5 0.0054 1.8E-07 45.1 6.1 64 96-160 4-73 (82)
35 3vh5_A CENP-S; histone fold, c 96.5 0.0034 1.2E-07 50.4 5.3 80 90-171 17-96 (140)
36 2jss_A Chimera of histone H2B. 96.5 0.0054 1.9E-07 50.6 6.4 61 99-160 7-67 (192)
37 1tzy_C Histone H3; histone-fol 96.4 0.0091 3.1E-07 47.6 7.0 67 92-160 59-130 (136)
38 1bh9_B TAFII28; histone fold, 96.3 0.0093 3.2E-07 44.2 6.1 64 95-160 16-80 (89)
39 2yfv_A Histone H3-like centrom 96.2 0.0087 3E-07 45.4 5.9 69 92-160 24-98 (100)
40 3nqu_A Histone H3-like centrom 96.2 0.0089 3.1E-07 47.9 6.3 68 92-160 58-131 (140)
41 3r45_A Histone H3-like centrom 96.2 0.0069 2.4E-07 49.4 5.6 69 92-160 74-147 (156)
42 2l5a_A Histone H3-like centrom 95.4 0.021 7E-07 49.3 5.6 59 101-161 167-225 (235)
43 2ly8_A Budding yeast chaperone 95.4 0.037 1.3E-06 43.3 6.5 49 111-160 62-110 (121)
44 4dra_E Centromere protein X; D 94.9 0.1 3.5E-06 38.4 7.2 67 92-158 9-76 (84)
45 3b0b_C CENP-X, centromere prot 94.6 0.11 3.8E-06 37.9 6.8 66 93-158 6-72 (81)
46 1k6k_A ATP-dependent CLP prote 91.3 0.26 9.1E-06 36.5 4.7 40 131-170 6-45 (143)
47 1h3o_B Transcription initiatio 87.6 2.5 8.5E-05 30.4 7.2 66 95-161 5-70 (76)
48 2y1q_A CLPC N-domain, negative 87.5 0.46 1.6E-05 35.5 3.5 39 131-169 10-50 (150)
49 1khy_A CLPB protein; alpha hel 87.2 0.6 2.1E-05 34.7 4.0 33 131-163 10-42 (148)
50 3fes_A ATP-dependent CLP endop 86.3 0.45 1.5E-05 36.0 2.9 33 131-163 12-44 (145)
51 3fh2_A Probable ATP-dependent 85.2 0.76 2.6E-05 34.6 3.7 39 131-169 11-51 (146)
52 3zri_A CLPB protein, CLPV; cha 82.1 1.2 4.3E-05 35.3 3.9 42 123-164 18-62 (171)
53 3fes_A ATP-dependent CLP endop 81.6 1.1 3.7E-05 33.8 3.3 40 131-170 86-127 (145)
54 3fh2_A Probable ATP-dependent 80.9 1.4 4.8E-05 33.1 3.7 39 132-170 87-127 (146)
55 1wwi_A Hypothetical protein TT 79.6 4.3 0.00015 32.7 6.2 60 95-156 2-61 (148)
56 1k6k_A ATP-dependent CLP prote 76.2 2.5 8.6E-05 31.1 3.7 40 131-170 84-125 (143)
57 1khy_A CLPB protein; alpha hel 74.9 4 0.00014 30.1 4.6 40 131-170 87-127 (148)
58 1r6b_X CLPA protein; AAA+, N-t 71.1 4.7 0.00016 37.8 5.1 40 131-170 6-45 (758)
59 2y1q_A CLPC N-domain, negative 70.5 2.7 9.1E-05 31.2 2.7 33 131-163 84-116 (150)
60 3zri_A CLPB protein, CLPV; cha 69.2 4 0.00014 32.4 3.6 32 132-163 104-136 (171)
61 2l5a_A Histone H3-like centrom 67.6 12 0.0004 32.2 6.4 47 113-159 35-81 (235)
62 1r4v_A Hypothetical protein AQ 63.2 5.8 0.0002 32.7 3.5 60 95-156 26-85 (171)
63 3pxg_A Negative regulator of g 55.4 7.9 0.00027 34.6 3.3 32 131-162 10-41 (468)
64 3pxi_A Negative regulator of g 50.9 9.8 0.00033 35.8 3.3 32 131-162 10-41 (758)
65 3pxg_A Negative regulator of g 48.3 10 0.00036 33.8 2.9 34 131-164 84-117 (468)
66 1qvr_A CLPB protein; coiled co 43.7 18 0.0006 34.8 3.9 34 131-164 10-43 (854)
67 2vxz_A Pyrsv_GP04; viral prote 39.7 65 0.0022 26.3 6.0 46 125-171 71-116 (165)
68 3pxi_A Negative regulator of g 39.7 16 0.00056 34.3 2.9 34 131-164 84-117 (758)
69 1r6b_X CLPA protein; AAA+, N-t 37.5 24 0.00083 32.9 3.7 34 131-164 84-117 (758)
70 2v1u_A Cell division control p 37.4 97 0.0033 25.1 6.9 47 114-160 222-274 (387)
71 3uk6_A RUVB-like 2; hexameric 35.6 1E+02 0.0035 25.2 6.9 48 114-161 278-329 (368)
72 2qby_A CDC6 homolog 1, cell di 29.6 1.3E+02 0.0043 24.3 6.4 48 114-161 218-271 (386)
73 3kw6_A 26S protease regulatory 28.4 74 0.0025 21.1 4.1 35 122-160 37-71 (78)
74 3fwb_A Cell division control p 27.8 1.5E+02 0.0052 20.4 6.5 85 93-179 53-149 (161)
75 1g8p_A Magnesium-chelatase 38 25.3 1.3E+02 0.0045 24.2 5.8 47 114-160 267-320 (350)
76 1qvr_A CLPB protein; coiled co 20.7 51 0.0017 31.6 2.7 34 131-164 87-120 (854)
77 2dzn_B 26S protease regulatory 20.5 1.3E+02 0.0046 20.1 4.2 44 114-161 24-67 (82)
78 1f6v_A DNA transposition prote 20.3 31 0.0011 25.5 0.9 29 131-160 49-77 (91)
79 3n22_A Protein S100-A2; EF-han 20.0 1.9E+02 0.0064 20.1 5.0 52 127-178 6-70 (98)
No 1
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.1e-47 Score=299.61 Aligned_cols=110 Identities=55% Similarity=0.842 Sum_probs=104.8
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++++|||+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 9 ~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 9 KSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp -CCCCCHHHHHTCSSCHHHHHHHHHHHSSSC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CcCCcCcccccCccCChHHHHHHHHcCcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4577899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhc-cccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKG-TIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+||++||++ ||++|||+|+||++|++|+.+
T Consensus 88 DeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 88 DEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred CHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 9999999998 999999999999999999864
No 2
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=3.2e-47 Score=301.58 Aligned_cols=111 Identities=89% Similarity=1.236 Sum_probs=100.7
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++++|||+||||||||+||+|+|++++|+.+||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 14 ~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 14 KTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp ---CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 56789999999999999999999999998756999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhccccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKGTIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+||++||+.||++|||+|+||++|++|+.+
T Consensus 94 DeEL~~Ll~~tia~ggv~P~i~~~l~~k~~~ 124 (128)
T 1f66_C 94 DEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 124 (128)
T ss_dssp SHHHHHHCCSEETTCCCCCCCCGGGC-----
T ss_pred cHHHhhhhcceecCCccCCCCCHHhcCcccc
Confidence 9999999977999999999999999999874
No 3
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.2e-46 Score=297.72 Aligned_cols=110 Identities=58% Similarity=0.932 Sum_probs=104.0
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++++|||+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 12 ~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 12 AKASQSRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp ----CCTTGGGTCSSCHHHHHHHHHTTCSCS-EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCCCCCccccCCeecCHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5578999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhc-cccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKG-TIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+|||+||++ ||++|||+|+||++|++|+.+
T Consensus 91 DeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~ 122 (131)
T 1id3_C 91 DDELNKLLGNVTIAQGGVLPNIHQNLLPKKSA 122 (131)
T ss_dssp CHHHHHHTTTEEETTCCCCCCCCGGGSCCSCC
T ss_pred cHHHHHHhcCceecCCccCCCccHHHcCcccc
Confidence 9999999998 999999999999999999864
No 4
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=3.6e-46 Score=295.83 Aligned_cols=110 Identities=65% Similarity=0.950 Sum_probs=103.5
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++++|||+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 12 ~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 12 RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp --CCCCHHHHHTCSSCHHHHHHHHHHTTSSS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCCCCCccccCceeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5578899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhc-cccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKG-TIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+||++||++ ||++|||+|+||++|++|+.+
T Consensus 91 DeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~ 122 (129)
T 1tzy_A 91 DEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 122 (129)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred cHHHHHHhCCCeecCCCcCCCCCHHHcCcccc
Confidence 9999999998 999999999999999999864
No 5
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=7.3e-46 Score=291.90 Aligned_cols=110 Identities=66% Similarity=0.969 Sum_probs=103.7
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++++|||+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 10 ~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 10 KGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp ---CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCCCCCccccCCeeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 5578899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhc-cccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKG-TIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+||++||++ ||++|||+|+||++|++|+.+
T Consensus 89 DeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~ 120 (123)
T 2nqb_C 89 DEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120 (123)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSSCC--
T ss_pred cHHHHHHhcCceeCCCCcCCCccHHHcCcccc
Confidence 9999999998 999999999999999999874
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=4.2e-45 Score=296.34 Aligned_cols=110 Identities=64% Similarity=0.947 Sum_probs=102.8
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+++.+|||+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+|
T Consensus 31 ~~k~~srS~ragLqFPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 31 RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp ---CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCCccccCCeeccHHHHHHHHHcccccc-ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 5578899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred chHHhHhhhc-cccCCcccCCCCcccccCCCC
Q 046088 162 DEELDTLIKG-TIAGGGVIPHIHKSLINKSTK 192 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~P~i~~~ll~k~~k 192 (193)
|+||++||++ ||++|||+|+||++|++|+.+
T Consensus 110 DeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~ 141 (149)
T 2f8n_K 110 DEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 141 (149)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred cHHHHHHhcCceEcCCCCCCCccHHHcCcccc
Confidence 9999999998 999999999999999999874
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=9e-38 Score=260.07 Aligned_cols=99 Identities=74% Similarity=1.103 Sum_probs=95.3
Q ss_pred CCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCch
Q 046088 84 KPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 84 ~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDe 163 (193)
+++|||+||||||||+||+|+|++++++.+||+++|||||+||||||++||||+|+|+|++++++||+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 56799999999999999999999998874599999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhccccCCcccCCC
Q 046088 164 ELDTLIKGTIAGGGVIPHI 182 (193)
Q Consensus 164 EL~~Lf~~tIa~GGv~P~i 182 (193)
||++||+.||++|||+|+|
T Consensus 174 eL~~L~~~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIRATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHCSCCTTTCCSSCC
T ss_pred HHHHHHhhhhcCCCcCCCC
Confidence 9999997799999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.94 E-value=1.3e-27 Score=236.35 Aligned_cols=102 Identities=25% Similarity=0.439 Sum_probs=82.0
Q ss_pred CCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCch
Q 046088 84 KPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 84 ~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDe 163 (193)
...|||+|||||||||||||+| +++|+. ||+++||||||||||||+|||||||||+|++++++||+|+||++|++||+
T Consensus 93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~-r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGY-KIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHTTCCCSSSCSSCHHHHHHHH-HHHHCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred hhhcccccCCccccHHHHHHHh-hccccc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 3468999999999999999999 999997 99999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhccccCCcccCCCCcccc
Q 046088 164 ELDTLIKGTIAGGGVIPHIHKSLI 187 (193)
Q Consensus 164 EL~~Lf~~tIa~GGv~P~i~~~ll 187 (193)
||+.||+.....+|++|.....-.
T Consensus 171 eL~~l~~~dee~~~~lp~~~~~~~ 194 (1049)
T 3ksy_A 171 VLMDMFHQDVEDINILSLTDEEPS 194 (1049)
T ss_dssp SHHHHCC-----------------
T ss_pred HHHHHHhhccccccCCCCccccCc
Confidence 999999875567788887665433
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=9.9e-24 Score=159.27 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=62.2
Q ss_pred cccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhH
Q 046088 88 RSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDT 167 (193)
Q Consensus 88 rSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~ 167 (193)
++.+++++||++||+|+||.+.+.. |||++||||+++++|||++|++++|++.|+++++++|+|+||++||++|++|++
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~-~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIG-KVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCC-CBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred cccccCCCCChHHHHHHHHcCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 4678999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 046088 168 LIK 170 (193)
Q Consensus 168 Lf~ 170 (193)
|+.
T Consensus 83 L~d 85 (98)
T 1jfi_A 83 NKA 85 (98)
T ss_dssp ---
T ss_pred HHh
Confidence 984
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.78 E-value=4.8e-19 Score=133.10 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=71.4
Q ss_pred ccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 91 RAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 91 RAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
-.+++||++||+|+||.+.+.. ||++.|++|+++++|||+.++++.|++.|+++++++|+|+||..||++|++|++|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~-~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVK-MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCcccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3478899999999999998876 99999999999999999999999999999999999999999999999999999997
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.76 E-value=1.2e-18 Score=135.49 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=72.3
Q ss_pred CcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 93 GLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 93 GLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
-.+||++||+|+||.+.+.. ||+++|++|+++++|||+++|++.|++.|+++++++|+|+||..||++|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~-~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVK-MISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 34699999999999998876 99999999999999999999999999999999999999999999999999999875
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.67 E-value=4.6e-17 Score=130.35 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=62.2
Q ss_pred CCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHH-hhcCCceechhhHHHHhhCc
Q 046088 84 KPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNAS-KDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 84 ~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA-~~~kkkRItPrHIqlAI~nD 162 (193)
++.+++.+.+++||++||+|+||.+.+.. +|++.|+++++.++|||+.++++.|++.| ...++++|+++||..||+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~-~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTG-LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ---------------------CCSSSSCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 45788899999999999999999998876 99999999999999999999999999999 99999999999999999999
Q ss_pred hHHhHhh
Q 046088 163 EELDTLI 169 (193)
Q Consensus 163 eEL~~Lf 169 (193)
++|++|.
T Consensus 87 e~~dFL~ 93 (140)
T 2byk_A 87 KNLEFLL 93 (140)
T ss_dssp STTGGGT
T ss_pred chhhhHh
Confidence 9999998
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.62 E-value=6.9e-16 Score=117.07 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+.++.+|++++| ||++.|+|+++...+ . ||+.++..+|+.+|||++.||++.|.+.|+..++++|+|+||.+|+++
T Consensus 18 r~~k~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 18 RHRKVLRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp ---CCCCCGGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccchhhhccc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 556779999999 999999999999987 4 999999999999999999999999999999999999999999999996
Q ss_pred c
Q 046088 162 D 162 (193)
Q Consensus 162 D 162 (193)
.
T Consensus 94 ~ 94 (103)
T 1tzy_D 94 Q 94 (103)
T ss_dssp T
T ss_pred c
Confidence 5
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.61 E-value=7.3e-16 Score=117.09 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 82 KKKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 82 ~k~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+.++++|++++| ||++.|+|+++...+ . ||+.++..+|+.+|||++.||++.|.+.|+..++++|+|+||.+|+++
T Consensus 18 r~~~~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 18 RHRKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp --------------CCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chhhhhhhhhcc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 556778999999 999999999999987 5 999999999999999999999999999999999999999999999996
Q ss_pred ch
Q 046088 162 DE 163 (193)
Q Consensus 162 De 163 (193)
..
T Consensus 94 ~g 95 (103)
T 2yfw_B 94 QG 95 (103)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.24 E-value=1.1e-11 Score=100.86 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=67.2
Q ss_pred cccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCc
Q 046088 90 SRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 90 sRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nD 162 (193)
.|.++.||++.|.|+||++ .+. |||++|.++|+.+|||++.+|.+.|.+.|+..++++|+|+||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~-RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIE-RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999999 555 9999999999999999999999999999999999999999999999864
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.93 E-value=2.4e-09 Score=74.69 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=60.8
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.+|.++|.|+||+. .. .||+++|...|.-++|+++.+|.+.|...|...+++.|+|+||++|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~-~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-Cc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999999 44 4999999999999999999999999999999999999999999999863
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.85 E-value=6.8e-09 Score=73.09 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=61.4
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.||.+.|+|++|+... . |++..+...|..++|+++.+|++.|...|+..|++.|+|+||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~g~-~-ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAGA-E-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTTC-S-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcCc-c-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5899999999999854 4 999999999999999999999999999999999999999999999975
No 18
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.74 E-value=2.7e-08 Score=75.51 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCCCcccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCc
Q 046088 84 KPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 84 ~~~SrSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nD 162 (193)
+++.+.+..+ +|..-|.|+++.... . ||+..+..-|+.+|||++.+|++-|...|+..+++.|+++||.+|++..
T Consensus 19 ~k~~r~~i~~--ip~~~I~Rlar~~Gv-~-rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 19 RKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -----CCGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHhccCC--CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4556666666 788999999999865 4 9999999999999999999999999999999999999999999999843
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.52 E-value=2.1e-07 Score=68.64 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=62.4
Q ss_pred cCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 92 AGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
..+.+|.++|.|+||+......||++.|...++-+.|.++.++.+.|...|...+++.|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 357899999999999984323499999999999999999999999999999999999999999999997
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.34 E-value=1.1e-06 Score=62.78 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=59.8
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|.+.|.|+|++.... .+|+.+|...+.-.+|-+..+|-.-|...|+..+++.|+++||+.|++
T Consensus 4 ~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999965444 499999999999999999999999999999999999999999999987
No 21
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.32 E-value=5.8e-07 Score=70.60 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred CcccchhhHHhhhhc-cCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHh
Q 046088 93 GLQFPVGRIHRLLKS-RTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 168 (193)
Q Consensus 93 GLqFPVsRI~RlLke-~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~L 168 (193)
.+.||.++|.|+|++ .... .+|+..|...|+-+.|.|+.+|-..|...|...+++.|+++||..|+...+-++++
T Consensus 7 d~~LP~A~I~rImK~~~pd~-~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPES-ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCccc-ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 468999999999996 3334 49999999999999999999999999999999999999999999999976554443
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.09 E-value=6.7e-06 Score=66.74 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=60.4
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHh
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 159 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI 159 (193)
-+|..-|.|+||+.-.+. |||..|...|+.++|.+..+|...|.+.|+..++|.|+++||.+|+
T Consensus 4 ~LP~a~V~Riik~~lg~~-rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 379999999999995555 9999999999999999999999999999999999999999999998
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.07 E-value=1.2e-05 Score=58.64 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=63.8
Q ss_pred cccccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCc
Q 046088 88 RSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 88 rSsRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nD 162 (193)
|.+..| +|..-|+|+++.+.. . ||+..+..-|+.++||++.+|++-|...++..+++.|+++||.+|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~Gv-~-rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 334445 788899999999866 4 9999999999999999999999999999999999999999999999854
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.89 E-value=4e-05 Score=54.91 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred cccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 94 LQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 94 LqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
-.||+.-|+++.+.-.. . |++..+...|+--+||-..||++-|.+.++..++++++.+||..|++
T Consensus 5 s~lp~~~v~~iaes~Gi-~-~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV-G-SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC-C-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46999999999998766 4 99999999999999999999999999999999999999999999985
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.60 E-value=6.7e-05 Score=57.53 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=60.9
Q ss_pred CcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHH
Q 046088 93 GLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 165 (193)
Q Consensus 93 GLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL 165 (193)
.+.+|-+-|.|+++++.. .|||..+..-|.-+++.++.+|..-|...|+..+++.|+++||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~g~--~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVK--TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHHHC--SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHCCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 346899999999999855 49999999999999999999999999999999999999999999999976544
No 26
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.57 E-value=0.00015 Score=60.20 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=66.0
Q ss_pred ccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 91 RAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 91 RAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
-..+.+|.+.|.|+|++... ..||+..|...|+-+.+-++..|-..|...|...+++.|+++||..|+. +-++..++
T Consensus 11 ~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 34567999999999999754 3599999999999999999999999999999999999999999999998 44444443
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.10 E-value=0.0017 Score=46.05 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=55.5
Q ss_pred hHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 100 RIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 100 RI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
-|+|+|++..- + |++..++.-|.-.+|-.+.+|+.-|...|+..+++.|+.+||++||+.
T Consensus 6 ~i~~iLk~~G~-~-~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNV-Q-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTC-C-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCC-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 47899998755 5 999999999999999999999999999999999999999999999974
No 28
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.07 E-value=0.001 Score=52.40 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=55.9
Q ss_pred hhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 99 GRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 99 sRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
..|+|+|++-.... +|++.|.-.|...++.+...|-.-|.+.|+-++++.||+|+||.|++
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 57899999876543 89999999999999999999999999999999999999999999997
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.01 E-value=0.0015 Score=51.64 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred cccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 94 LQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 94 LqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
-.|.+ .|+|+|++-.... +|++.|.-.|...++.+...|-.-|.+.|+-++++.||+|+||.|++
T Consensus 36 esy~~-YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34655 7999999876544 89999999999999999999999999999999999999999999997
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.96 E-value=0.0011 Score=51.41 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=65.4
Q ss_pred ccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhhh
Q 046088 91 RAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 170 (193)
Q Consensus 91 RAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf~ 170 (193)
++-|.+.|+||-+-.-..+. ..++..+..-|+.+++..+.+|..-+...|+.-|++.|++.||.++++.++.|..+++
T Consensus 26 Kaal~y~V~rIvke~gaer~--~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDKE--MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 67788999888654422222 2588888888888888888888888888899999999999999999999999999886
Q ss_pred c
Q 046088 171 G 171 (193)
Q Consensus 171 ~ 171 (193)
.
T Consensus 104 ~ 104 (113)
T 4dra_A 104 D 104 (113)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0025 Score=47.48 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=60.3
Q ss_pred ccCcccchhhHHhhh-hccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 91 RAGLQFPVGRIHRLL-KSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 91 RAGLqFPVsRI~RlL-ke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
|+-|++-|++|-.-. +++. ..++..+..-|+.+++-.+.+|.+-+...|+.-|++.|++.||.++++.++.|..++
T Consensus 11 Kaal~~~V~ki~~e~~~~~g---~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l 87 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSED---IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERV 87 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHh
Confidence 456777787764433 2221 257777777777777777777777788889999999999999999999999999887
Q ss_pred hc
Q 046088 170 KG 171 (193)
Q Consensus 170 ~~ 171 (193)
.+
T Consensus 88 ~~ 89 (90)
T 3v9r_A 88 TQ 89 (90)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.82 E-value=0.0015 Score=50.10 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=65.8
Q ss_pred cccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 90 SRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 90 sRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
=|+-|+|-|+||-+---.... .|++..+..-|+-+++..+.+|..-+...|+.-|++.|+++||.+|++.++.|...+
T Consensus 17 LKaal~~~V~rI~~~~g~~~~--~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l 94 (107)
T 3b0b_B 17 LRAAVHYTTGCLCQDVAEDKG--VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYI 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHH
Confidence 356788888887654422212 389999999999888888899999999999999999999999999999999988877
Q ss_pred hc
Q 046088 170 KG 171 (193)
Q Consensus 170 ~~ 171 (193)
+.
T Consensus 95 ~~ 96 (107)
T 3b0b_B 95 TQ 96 (107)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 33
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.82 E-value=0.0036 Score=45.48 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred ccchhhHHhhhhccC---CcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 95 QFPVGRIHRLLKSRT---TAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 95 qFPVsRI~RlLke~~---~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|..=+.|++|+-. ....|++++|-..|.-+.|....+++|-+..-|...++..|.|+||++|.+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 455555566665541 012499999999999999999999999999999999999999999999976
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.53 E-value=0.0054 Score=45.06 Aligned_cols=64 Identities=19% Similarity=0.053 Sum_probs=53.2
Q ss_pred cchhhHHhhhhccC------CcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 96 FPVGRIHRLLKSRT------TAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 96 FPVsRI~RlLke~~------~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
+|-.-+.|++|+-. .. .|++++|-..|--+.|....+++|-|..-|...++..|.|+||++|.+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~-~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 44444555565533 23 499999999999999999999999999999999999999999999976
No 35
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.50 E-value=0.0034 Score=50.40 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=65.8
Q ss_pred cccCcccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhh
Q 046088 90 SRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 169 (193)
Q Consensus 90 sRAGLqFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf 169 (193)
=++-|+|-|++|-.-.-.... ..++..+...|+.+++..+.+|..-+-..|+.-|++.|++.||.++++.++.|..++
T Consensus 17 LKaAl~y~VgkIvee~~~~~~--~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L 94 (140)
T 3vh5_A 17 LRAAVHYTTGALAQDVAEDKG--VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYI 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 366788888888654422222 368888888888888888888888888889999999999999999999999999998
Q ss_pred hc
Q 046088 170 KG 171 (193)
Q Consensus 170 ~~ 171 (193)
+.
T Consensus 95 ~~ 96 (140)
T 3vh5_A 95 TQ 96 (140)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 36
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.45 E-value=0.0054 Score=50.59 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=55.0
Q ss_pred hhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 99 GRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 99 sRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
..|+|.|++..... .|+..|..+|...++.+...|-.-|.+-++.++++.||+++||.|++
T Consensus 7 ~yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 46899999876654 89999999999999999999999999999999999999999999997
No 37
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.37 E-value=0.0091 Score=47.55 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=60.0
Q ss_pred cCcccchhhHHhhhhcc-----CCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 92 AGLQFPVGRIHRLLKSR-----TTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~-----~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|.+|..-+.|+++|- .. .|+.++|-..|.-+.|....+++|-+..-|...++..|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~--~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTD--LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhh--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 46788888888888776 32 599999999999999999999999999999999999999999999976
No 38
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.25 E-value=0.0093 Score=44.20 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=53.9
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceechhhHHHHhh
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL-KVKRITPRHLQLAIR 160 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~-kkkRItPrHIqlAI~ 160 (193)
.||=..|+|+++.-.. ..++....+.|+++--.++.||+|.|....... ....|.|+||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 3777789999976643 389999999999999999999999999886654 455899999999976
No 39
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.23 E-value=0.0087 Score=45.36 Aligned_cols=69 Identities=23% Similarity=0.123 Sum_probs=56.9
Q ss_pred cCcccchhhHHhhhhccCCc------ccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 92 AGLQFPVGRIHRLLKSRTTA------HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~~~a------~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|.+|..-+.|++++-... ..|++++|-..|.-+.|....+++|-|..-|...++..|.|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 57888888888888775410 2499999999999999999999999999999999999999999999975
No 40
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.23 E-value=0.0089 Score=47.91 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=59.2
Q ss_pred cCcccchhhHHhhhhccC------CcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 92 AGLQFPVGRIHRLLKSRT------TAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~~------~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|.+|..-+.|+++|-. .. .|+.++|-..|--+.|....+++|-|..-|...++..|.|+||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~-~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccccc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 567888888888887643 22 499999999999999999999999999999999999999999999976
No 41
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.20 E-value=0.0069 Score=49.40 Aligned_cols=69 Identities=19% Similarity=0.061 Sum_probs=59.6
Q ss_pred cCcccchhhHHhhhhccCC-----cccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 92 AGLQFPVGRIHRLLKSRTT-----AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~~~-----a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.+|.+|..-+.|+++|-.. ...|+.++|-..|.-+.|....+++|-|..-|...++..|.|+||++|.+
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 5688888888888877431 12499999999999999999999999999999999999999999999986
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.021 Score=49.27 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred HHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 101 IHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 101 I~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
+.|+.+.+.. + |||..+..-+..+||.+..+|+.-|...|...+++.||+.||.+|++.
T Consensus 167 ~~RlaRrgGV-k-RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCTTC-C-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcCCc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 4588888766 5 999999999999999999999999999999999999999999999873
No 43
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.037 Score=43.28 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 111 AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 111 a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
++ |||..+-.-+..+||-+..+|+.-|...++..++|.||..||.+|++
T Consensus 62 vk-RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 62 SK-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SS-CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 35 99999999999999999999999999999999999999999999987
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=94.86 E-value=0.1 Score=38.40 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred cCcccchhhHHhhhhccCC-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHH
Q 046088 92 AGLQFPVGRIHRLLKSRTT-AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 158 (193)
Q Consensus 92 AGLqFPVsRI~RlLke~~~-a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlA 158 (193)
++-.||..-|.|+|+..-. .+-||+.+|-.-++..|+-|+.|.+-.|...|...+...|..+||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 4567999999999985432 235999999999999999999999999999999888888999999864
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=94.59 E-value=0.11 Score=37.87 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=56.6
Q ss_pred CcccchhhHHhhhhccCC-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHH
Q 046088 93 GLQFPVGRIHRLLKSRTT-AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 158 (193)
Q Consensus 93 GLqFPVsRI~RlLke~~~-a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlA 158 (193)
+-.||..-|+|+|+..-. .+-||+.+|-.-++..|+-|+.|.+..|...|+..+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 446999999999987422 134999999999999999999999999999999888889999999874
No 46
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=91.31 E-value=0.26 Score=36.55 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 170 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf~ 170 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.|++...+++
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4688999999999999999999999999988876655554
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=87.58 E-value=2.5 Score=30.37 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=57.8
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.++-.++..++++-.... .+...+--.|.-+-+=|+..+++.|...|+..+...+.++++++.+..
T Consensus 5 vl~k~~L~~Lv~~idp~~-~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNE-QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 456678888888765544 899999999999999999999999999999999999999999998764
No 48
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=87.49 E-value=0.46 Score=35.51 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH--HhHhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLI 169 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE--L~~Lf 169 (193)
+.++|+.|-+.|...+...|+|+||-+|+-.+++ ...++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHH
Confidence 3678999999999999999999999999976553 44444
No 49
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=87.18 E-value=0.6 Score=34.66 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCch
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDe 163 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.|+
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357899999999999999999999999997765
No 50
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=86.34 E-value=0.45 Score=35.98 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCch
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDe 163 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.|+
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 468899999999999999999999999998654
No 51
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=85.22 E-value=0.76 Score=34.64 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCc--hHHhHhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDTLI 169 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nD--eEL~~Lf 169 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.| .....++
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 51 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKAL 51 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHH
Confidence 36889999999999999999999999999765 3344444
No 52
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=82.07 E-value=1.2 Score=35.33 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 123 SAAILEYL---TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 123 LAAVLEYL---tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+...+|-| +.++|+.|.+.|+..+...|+|+||-+|+-.|++
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~ 62 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPL 62 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTT
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccC
Confidence 34444444 3578999999999999999999999999987653
No 53
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=81.64 E-value=1.1 Score=33.81 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH--HhHhhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 170 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE--L~~Lf~ 170 (193)
+.++|+.|...|+..+...|+++||-+|+-.|++ ...+++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4678999999999999999999999999986553 555654
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=80.86 E-value=1.4 Score=33.12 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCCceechhhHHHHhhCch--HHhHhhh
Q 046088 132 AEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIK 170 (193)
Q Consensus 132 AEILELAGnaA~~~kkkRItPrHIqlAI~nDe--EL~~Lf~ 170 (193)
.++|+.|...|+..+...|+++||-+|+-.|+ ....+++
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 58899999999999999999999999997554 4556664
No 55
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=79.59 E-value=4.3 Score=32.72 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=51.7
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHH
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 156 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIq 156 (193)
.+++.+++|++|+.-. .-|..+-.-=+..++|-=..++|+.|-..|+.|++.-|.|+||-
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 4688999999998644 25777777778889999999999999999999999999999974
No 56
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=76.19 E-value=2.5 Score=31.12 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH--HhHhhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 170 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE--L~~Lf~ 170 (193)
+.++|+.|...|+..+...|+++||-+|+-.|++ ...+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578999999999999999999999999987653 444544
No 57
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=74.95 E-value=4 Score=30.09 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhC-chHHhHhhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRG-DEELDTLIK 170 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~n-DeEL~~Lf~ 170 (193)
+.++|+.|...|+..+...|+++||-+|+-. |.....+++
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 5678999999999999999999999999984 333445554
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=71.06 E-value=4.7 Score=37.76 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 170 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf~ 170 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.|++...+++
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998877666654
No 59
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=70.53 E-value=2.7 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCch
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDe 163 (193)
+.++|+.|...|+..+...|+++||-+|+-.|+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 467899999999999999999999999997554
No 60
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=69.18 E-value=4 Score=32.36 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHh-hcCCceechhhHHHHhhCch
Q 046088 132 AEVLELAGNASK-DLKVKRITPRHLQLAIRGDE 163 (193)
Q Consensus 132 AEILELAGnaA~-~~kkkRItPrHIqlAI~nDe 163 (193)
.++|+.|..+|+ ..+...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 578999999999 99999999999999998777
No 61
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=67.58 E-value=12 Score=32.15 Aligned_cols=47 Identities=21% Similarity=0.068 Sum_probs=42.3
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHh
Q 046088 113 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 159 (193)
Q Consensus 113 ~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI 159 (193)
.|..++|-.-|--+-|...-.++|-+.--|...++-.|.|+|+|+|-
T Consensus 35 lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 35 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 58999999999888898888899999888888899999999999994
No 62
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=63.22 E-value=5.8 Score=32.65 Aligned_cols=60 Identities=5% Similarity=-0.058 Sum_probs=52.4
Q ss_pred ccchhhHHhhhhccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHH
Q 046088 95 QFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 156 (193)
Q Consensus 95 qFPVsRI~RlLke~~~a~~RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIq 156 (193)
.+++.+++|++|+.-. .-|..+-.-=+..++|-=..++|+.|-..|+.|++.-|.|+||-
T Consensus 26 vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP 85 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN 85 (171)
T ss_dssp CTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC
T ss_pred cCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 7899999999998644 25777777778888999999999999999999999999999974
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.37 E-value=7.9 Score=34.57 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCc
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nD 162 (193)
+.++|+.|-..|+..+...|+|+||-+|+-.+
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~ 41 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 46789999999999999999999999999765
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.91 E-value=9.8 Score=35.81 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCc
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD 162 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nD 162 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.|
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 36789999999999999999999999999755
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.32 E-value=10 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+.++|+.|...|+..+...|.++||-+|+-.|++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3578899999999999999999999999986654
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=43.65 E-value=18 Score=34.77 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+.++|+.|-+.|+..+...|+|+||-+|+-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 4678999999999999999999999999976553
No 67
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=39.68 E-value=65 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhCchHHhHhhhc
Q 046088 125 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 171 (193)
Q Consensus 125 AVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~nDeEL~~Lf~~ 171 (193)
+.+. .++++++--...-+..+.+-|+|-++..-|..|.|-..+|..
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 4444 677887777777788999999999999999999999999976
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.66 E-value=16 Score=34.29 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3678999999999999999999999999986654
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.54 E-value=24 Score=32.90 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+.++|+.|...|...+...|+++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4678999999999999999999999999987654
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.44 E-value=97 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=37.3
Q ss_pred ccCcchHHHHHHHHH------HHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 114 RVGATAAVYSAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 114 RIss~ApVYLAAVLE------YLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.++..+.-+++.... ..+-.+++.|...|...+...|+.+|++.|+.
T Consensus 222 ~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 577777777777766 44557888888888877888999999998875
No 71
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=35.56 E-value=1e+02 Score=25.21 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=34.9
Q ss_pred ccCcchHHHHHHHHH-HHH---HHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 114 RVGATAAVYSAAILE-YLT---AEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 114 RIss~ApVYLAAVLE-YLt---AEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.++..+.-+++..-+ .-. ..+++.|...|...+...|+..|++.|+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 577777777776665 222 346677777777778889999999999864
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=29.57 E-value=1.3e+02 Score=24.31 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=35.5
Q ss_pred ccCcchHHHHHHHHH------HHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 114 RVGATAAVYSAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 114 RIss~ApVYLAAVLE------YLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.++..+.-+++.... +..-++++.|+..|...+...|+.+|++.|+..
T Consensus 218 ~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 218 VLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 567777777776665 223457778887787778889999999988764
No 73
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=28.44 E-value=74 Score=21.05 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 122 YSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 122 YLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
|-.|=|+.++.|-.. .|-..+...|+.+|+..|+.
T Consensus 37 ~SGADi~~l~~eA~~----~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGM----YALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp CCHHHHHHHHHHHHH----HHHHTTCSEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Confidence 333444444444333 33344677899999999986
No 74
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.80 E-value=1.5e+02 Score=20.42 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=50.9
Q ss_pred CcccchhhHHhhhhccC-CcccccCcchHHHHHHHHHHHH----HHHHHHHHHHHhhcCCceechhhHHHHhh------C
Q 046088 93 GLQFPVGRIHRLLKSRT-TAHGRVGATAAVYSAAILEYLT----AEVLELAGNASKDLKVKRITPRHLQLAIR------G 161 (193)
Q Consensus 93 GLqFPVsRI~RlLke~~-~a~~RIss~ApVYLAAVLEYLt----AEILELAGnaA~~~kkkRItPrHIqlAI~------n 161 (193)
|+..+-..+.++++.-. ...++|+ -.-|+..+...+. .+-+..+.+....++.-.|+..++..+++ .
T Consensus 53 ~~~~~~~~~~~l~~~~d~~~~g~i~--~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~ 130 (161)
T 3fwb_A 53 GFELPKREILDLIDEYDSEGRHLMK--YDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLT 130 (161)
T ss_dssp TCCCCHHHHHHHHHHHCTTSSSCEE--HHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC
T ss_pred CCCCCHHHHHHHHHHhCcCCCCeEe--HHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCC
Confidence 44445555666665421 1112343 3445555544433 45566666666667788999999999886 6
Q ss_pred chHHhHhhhc-cccCCccc
Q 046088 162 DEELDTLIKG-TIAGGGVI 179 (193)
Q Consensus 162 DeEL~~Lf~~-tIa~GGv~ 179 (193)
++++..+|.. .....|.+
T Consensus 131 ~~~~~~~~~~~d~~~~g~i 149 (161)
T 3fwb_A 131 DEELRAMIEEFDLDGDGEI 149 (161)
T ss_dssp HHHHHHHHHTTCSSSSSSE
T ss_pred HHHHHHHHHHhCCCCCCcC
Confidence 7788888876 44444443
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=25.26 E-value=1.3e+02 Score=24.23 Aligned_cols=47 Identities=17% Similarity=-0.001 Sum_probs=32.4
Q ss_pred ccCcchHHHHHHHHHH-------HHHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 114 RVGATAAVYSAAILEY-------LTAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 114 RIss~ApVYLAAVLEY-------LtAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
.++..+--|++....- -...++++|...|...++..|+++|+..|+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4666666666554332 1235677777778777888899999998875
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.75 E-value=51 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhhCchH
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 164 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~nDeE 164 (193)
+.++|+.|...|...+...|.++||-+|+-.+++
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~ 120 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEATP 120 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccc
Confidence 4578999999999999999999999999986553
No 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=20.46 E-value=1.3e+02 Score=20.09 Aligned_cols=44 Identities=16% Similarity=-0.023 Sum_probs=30.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceechhhHHHHhhC
Q 046088 114 RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 161 (193)
Q Consensus 114 RIss~ApVYLAAVLEYLtAEILELAGnaA~~~kkkRItPrHIqlAI~n 161 (193)
.+...+.=|-.|=|+.++.|-...|. ..+...|+.+|+..|+..
T Consensus 24 ~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 24 SLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 45555666777777777776544443 335668999999998864
No 78
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=20.31 E-value=31 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCCceechhhHHHHhh
Q 046088 131 TAEVLELAGNASKDLKVKRITPRHLQLAIR 160 (193)
Q Consensus 131 tAEILELAGnaA~~~kkkRItPrHIqlAI~ 160 (193)
+...|.||...|+-++.. |+..||..|-.
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 456789999999887776 99999999987
No 79
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=20.04 E-value=1.9e+02 Score=20.08 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc-eechhhHHHHhhC-----------chHHhHhhhc-cccCCcc
Q 046088 127 LEYLTAEVLELAGNASKDLKVK-RITPRHLQLAIRG-----------DEELDTLIKG-TIAGGGV 178 (193)
Q Consensus 127 LEYLtAEILELAGnaA~~~kkk-RItPrHIqlAI~n-----------DeEL~~Lf~~-tIa~GGv 178 (193)
||.-..++.+.=-.....++.. .|+...+..+++. ++|++.+++. -.-+.|.
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~ 70 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQ 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCC
Confidence 4444555555433334345554 8999999988863 6788888875 3334443
Done!