BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046091
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 227/382 (59%), Gaps = 20/382 (5%)
Query: 39 SSDGFRFGY--QFKTSTPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y + P I +L N GT + + P++P+ TFPNHYSIVTGLYP HGI
Sbjct: 112 SLDGFRAEYLHTWGGLLPVISKLKNCGTYTK-NMRPMYPTKTFPNHYSIVTGLYPESHGI 170
Query: 97 INNHFVDPYTGDTFTMASHE---PKWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
I+N DP +F++ S E P W+ G+P+W T + +K+ TYFWPGS+V+
Sbjct: 171 IDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPGSDVEIDGI-L 229
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
P + + YNGSVPFE+R+ VL + LPS E P F TLY E+PD GH GP E+ +A
Sbjct: 230 PDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKA 288
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGM-VGTCDKKLIFLDDLASWIEIPAEWV 272
+ ++DR++G L+DG++ G+ + + ++++ DHGM G+C KK ++L+ +
Sbjct: 289 LQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQGSC-KKYVYLNKYLGDVN---NVK 344
Query: 273 QSYSPLLAIRP---PAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAASD 329
Y P +RP P Y + E + + L E ++ + YLK LP RLH+A SD
Sbjct: 345 VVYGPAARLRPTDVPETYYSFN-YEALAKNLSCR--EPNQHFRPYLKPFLPKRLHFAKSD 401
Query: 330 RIPPIIGLIEEGFKVEQKRTNRKECG-GAHGYDNAVFSMRTIFIGHGPQFARGRKVPSFE 388
RI P+ ++ +++ + RK CG G HG DN +M+ +FIG+GP F G +V SFE
Sbjct: 402 RIEPLTFYLDPQWQLALNPSERKYCGSGFHGSDNLFSNMQALFIGYGPAFKHGAEVDSFE 461
Query: 389 NVQIYNVITSILKIDGAPNNGS 410
N+++YN++ +L + APNNGS
Sbjct: 462 NIEVYNLMCDLLGLIPAPNNGS 483
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 227/382 (59%), Gaps = 20/382 (5%)
Query: 39 SSDGFRFGY--QFKTSTPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y + P I +L N GT + + P++P+ TFPNHYSIVTGLYP HGI
Sbjct: 116 SLDGFRAEYLHTWGGLLPVISKLKNCGTYTK-NMRPMYPTKTFPNHYSIVTGLYPESHGI 174
Query: 97 INNHFVDPYTGDTFTMASHE---PKWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
I+N DP +F++ S E P W+ G+P+W T + +K+ TYFWPGS+V+
Sbjct: 175 IDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPGSDVEIDGI-L 233
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
P + + YNGSVPFE+R+ VL + LPS E P F TLY E+PD GH GP E+ +A
Sbjct: 234 PDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKA 292
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGM-VGTCDKKLIFLDDLASWIEIPAEWV 272
+ ++DR++G L+DG++ G+ + + ++++ DHGM G+C KK ++L+ +
Sbjct: 293 LQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQGSC-KKYVYLNKYLGDVN---NVK 348
Query: 273 QSYSPLLAIRP---PAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAASD 329
Y P +RP P Y + E + + L E ++ + YLK LP RLH+A SD
Sbjct: 349 VVYGPAARLRPTDVPETYYSFN-YEALAKNLSCR--EPNQHFRPYLKPFLPKRLHFAKSD 405
Query: 330 RIPPIIGLIEEGFKVEQKRTNRKECG-GAHGYDNAVFSMRTIFIGHGPQFARGRKVPSFE 388
RI P+ ++ +++ + RK CG G HG DN +M+ +FIG+GP F G +V SFE
Sbjct: 406 RIEPLTFYLDPQWQLALNPSERKYCGSGFHGSDNLFSNMQALFIGYGPAFKHGAEVDSFE 465
Query: 389 NVQIYNVITSILKIDGAPNNGS 410
N+++YN++ +L + APNNGS
Sbjct: 466 NIEVYNLMCDLLGLIPAPNNGS 487
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 221/382 (57%), Gaps = 20/382 (5%)
Query: 39 SSDGFRFGY--QFKTSTPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y + P I +L N GT + P +P+ TFPNHYSIVTGLYP HGI
Sbjct: 116 SLDGFRAEYLHTWGGLLPVISKLKNCGTYTKNXR-PXYPTKTFPNHYSIVTGLYPESHGI 174
Query: 97 INNHFVDPYTGDTFTMASHE---PKWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
I+N DP +F++ S E P W+ G+P+W T + +K+ TYFWPGS+V+
Sbjct: 175 IDNKXYDPKXNASFSLKSKEKFNPLWYKGQPIWVTANHQEVKSGTYFWPGSDVEIDGI-L 233
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
P + + YNGSVPFE+R+ VL + LPS E P F TLY E+PD GH GP E+ +A
Sbjct: 234 PDIYKV-YNGSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKA 292
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGM-VGTCDKKLIFLDDLASWIEIPAEWV 272
+ ++DR++G L DG++ G+ + + ++++ DHG G+C KK ++L+ +
Sbjct: 293 LQKVDRLVGXLXDGLKDLGLDKCLNLILISDHGXEQGSC-KKYVYLNKYLGDVN---NVK 348
Query: 273 QSYSPLLAIRP---PAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAASD 329
Y P +RP P Y + E + + L E ++ + YLK LP RLH+A SD
Sbjct: 349 VVYGPAARLRPTDVPETYYSFN-YEALAKNLSCR--EPNQHFRPYLKPFLPKRLHFAKSD 405
Query: 330 RIPPIIGLIEEGFKVEQKRTNRKECG-GAHGYDNAVFSMRTIFIGHGPQFARGRKVPSFE 388
RI P+ ++ +++ + RK CG G HG DN + + +FIG+GP F G +V SFE
Sbjct: 406 RIEPLTFYLDPQWQLALNPSERKYCGSGFHGSDNLFSNXQALFIGYGPAFKHGAEVDSFE 465
Query: 389 NVQIYNVITSILKIDGAPNNGS 410
N+++YN+ +L + APNNGS
Sbjct: 466 NIEVYNLXCDLLGLIPAPNNGS 487
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 214/403 (53%), Gaps = 55/403 (13%)
Query: 39 SSDGFRFGYQFKTS--TPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y K S PNI +L + GT A + PV+P+ TFPN Y++ TGLYP HGI
Sbjct: 134 SVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGLYPESHGI 192
Query: 97 INNHFVDPYTGDTFTMASHEP---KWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
+ N DP TF + E +WW G+PLW T T G++A T+FW
Sbjct: 193 VGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFW------------ 240
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
+ S+P E R+ T+L + LP +E PS Y E PD GHK GP PE+T
Sbjct: 241 --------SVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNP 292
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVG-TCDKKLI---FLDDLASWIEIPA 269
+ ID+ +G+L+DG+++ + V ++ VGDHGM TCD+ +L ++ +P
Sbjct: 293 LREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPG 352
Query: 270 EWVQSYSPLLAIRPP----AGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHY 325
L IRP Y+P I+ + + ++ K Y+K LP RLHY
Sbjct: 353 T-------LGRIRPKIPNNLKYDPKAIIANLTCK------KPDQHFKPYMKQHLPKRLHY 399
Query: 326 AASDRIPPIIGLIEEGFKVEQKRTN--RKECG-----GAHGYDNAVFSMRTIFIGHGPQF 378
A + RI + L+E + V +K + +K G G HG+DN V SM+T+F+G+GP F
Sbjct: 400 ANNRRIEDLHLLVERRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTF 459
Query: 379 ARGRKVPSFENVQIYNVITSILKIDGAPNNGSSSFPLSILLRT 421
KVP FEN+++YNV+ +L + APNNG+ L+ LLRT
Sbjct: 460 KYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHG-SLNHLLRT 501
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 237 bits (605), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 215/403 (53%), Gaps = 55/403 (13%)
Query: 39 SSDGFRFGYQFKTS--TPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y K S PNI +L + GT A + PV+P+ TFPN Y++ TGLYP HGI
Sbjct: 134 SVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGLYPESHGI 192
Query: 97 INNHFVDPYTGDTFTMASHEP---KWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
+ N DP +F + E +WW G+PLW T T G++A T+FW
Sbjct: 193 VGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFW------------ 240
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
+ S+P E R+ T+L + LP +E PS Y E PD GHK GP PE+T
Sbjct: 241 --------SVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNP 292
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVG-TCDKKLI---FLDDLASWIEIPA 269
+ ID+ +G+L+DG+++ + V ++ VGDHGM TCD+ +L ++ +P
Sbjct: 293 LREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPG 352
Query: 270 EWVQSYSPLLAIRPP----AGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHY 325
L IR + Y+P I+ L K + ++ K Y+K LP RLHY
Sbjct: 353 T-------LGRIRAKSINNSKYDPKTII----AALTCKKPD--QHFKPYMKQHLPKRLHY 399
Query: 326 AASDRIPPIIGLIEEGFKVEQKRTN--RKECG-----GAHGYDNAVFSMRTIFIGHGPQF 378
A + RI I L++ + V +K + +K G G HG+DN V SM+T+F+G+GP F
Sbjct: 400 ANNRRIEDIHLLVDRRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTF 459
Query: 379 ARGRKVPSFENVQIYNVITSILKIDGAPNNGSSSFPLSILLRT 421
KVP FEN+++YNV+ +L + APNNG+ L+ LLRT
Sbjct: 460 KYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHG-SLNHLLRT 501
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 215/403 (53%), Gaps = 55/403 (13%)
Query: 39 SSDGFRFGYQFKTS--TPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGI 96
S DGFR Y K S PNI +L + GT A + PV+P+ TFPN Y++ TGLYP HGI
Sbjct: 169 SVDGFRASYMKKGSKVMPNIEKLRSCGTHAPY-MRPVYPTKTFPNLYTLATGLYPESHGI 227
Query: 97 INNHFVDPYTGDTFTMASHEP---KWWLGEPLWETVTNHGLKAATYFWPGSEVKKGSWNC 153
+ N DP +F + E +WW G+PLW T T G++A T+FW
Sbjct: 228 VGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFW------------ 275
Query: 154 PKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEITEA 213
+ S+P E R+ T+L + LP +E PS Y E PD GHK GP PE+T
Sbjct: 276 --------SVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNP 327
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVG-TCDKKLI---FLDDLASWIEIPA 269
+ ID+ +G+L+DG+++ + V ++ VGDHGM TCD+ +L ++ +P
Sbjct: 328 LREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPG 387
Query: 270 EWVQSYSPLLAIRPP----AGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHY 325
L IR + Y+P I+ L K + ++ K Y+K LP RLHY
Sbjct: 388 T-------LGRIRAKSINNSKYDPKTII----AALTCKKPD--QHFKPYMKQHLPKRLHY 434
Query: 326 AASDRIPPIIGLIEEGFKVEQKRTN--RKECG-----GAHGYDNAVFSMRTIFIGHGPQF 378
A + RI I L++ + V +K + +K G G HG+DN V SM+T+F+G+GP F
Sbjct: 435 ANNRRIEDIHLLVDRRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTF 494
Query: 379 ARGRKVPSFENVQIYNVITSILKIDGAPNNGSSSFPLSILLRT 421
KVP FEN+++YNV+ +L + APNNG+ L+ LLRT
Sbjct: 495 KYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHG-SLNHLLRT 536
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 198/392 (50%), Gaps = 32/392 (8%)
Query: 39 SSDGFRFGYQFKTSTPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGIIN 98
S DG R + TPN+ L G A + P +PSLTFPNHY++VTGL P +HGI++
Sbjct: 13 SIDGLRADMLDRGITPNLSHLAREGVRARW-MAPSYPSLTFPNHYTLVTGLRPDHHGIVH 71
Query: 99 NHFVDPYTGDTFTMASH---EPKWWLGEPLWETVTNHGLKAATYFWPGSE-----VKKGS 150
N DP G + S + +WW GEP+W V N G AAT+ WPGSE V+
Sbjct: 72 NSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGSEAAIKGVRPSQ 131
Query: 151 WNCPKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTLYFEDPDHQGHKVGPDDPEI 210
W +Y V + RVD V + ++ +TLYFE D GH GP+ +
Sbjct: 132 WR-------HYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQY 184
Query: 211 TEAVARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVGTCDKKLIFLDDLASWIEIPAE 270
+AV +D IGRL+ G+++ G I++V DHGM I ++D+A P +
Sbjct: 185 ADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIA-----PPQ 239
Query: 271 WVQSYSPLLAIRPPAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAASDR 330
+ + I G+ P + E G + + + K ELP+R Y + R
Sbjct: 240 IATAITDGQVI----GFEPLPGQQAAAEASVLGAHD---HYDCWRKAELPARWQYGSHPR 292
Query: 331 IPPIIGLIEEGFKV--EQKRTNRKECG--GAHGYDNAVFSMRTIFIGHGPQFARGRKVPS 386
IP ++ + EG+ K R + G G+HGYD A+ SMR +F+ GP A+G+ +P
Sbjct: 293 IPSLVCQMHEGWDALFPDKLAKRAQRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPG 352
Query: 387 FENVQIYNVITSILKIDGAPNNGSSSFPLSIL 418
F+NV +Y +++ +L I APN+G+ + L L
Sbjct: 353 FDNVDVYALMSRLLGIPAAPNDGNPATLLPAL 384
>pdb|1EI6|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|B Chain B, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|C Chain C, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
pdb|1EI6|D Chain D, Crystal Structure Of Phosphonoacetate Hydrolase Complexed
With Phosphonoformate
Length = 406
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 84/217 (38%), Gaps = 41/217 (18%)
Query: 73 VFPSLTFPNHYSIVTGLYPAYHGIINNHFVDPYTGDTFTMASHEPKWWLGEPLWETVTNH 132
V PS T PN+ SIVTG P+ HGI N F D T + M ++ K+ + +
Sbjct: 58 VVPSFTNPNNLSIVTGAPPSVHGICGNFFFDQETQEEVLM--NDAKYLRAPTILAEMAKA 115
Query: 133 GLKAATYFWPGSEVKKGSWNCPKGFCMNYNGS--VPFEDR-VDTVLSYFDLP-------- 181
G A +++ + KG C + + V E+ V+ +L+ +P
Sbjct: 116 GQLVAV-VTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENILARVGMPVPSVYSAD 174
Query: 182 -------------SSEIPSFMTLYFEDPDHQGHKVGPDDPEITEAVARIDRMIGRLIDGI 228
++E P FM Y D+ HK P PE A ++D
Sbjct: 175 LSEFVFAAGLSLLTNERPDFM--YLSTTDYVQHKHAPGTPEANAFYA--------MMDSY 224
Query: 229 EKRGVFEDVTIVMVGDHGMVGTCDK----KLIFLDDL 261
KR + + + DHGM D ++FL DL
Sbjct: 225 FKRYHEQGAIVAITADHGMNAKTDAIGRPNILFLQDL 261
>pdb|3SZY|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Apo Form
pdb|3SZZ|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With Acetate
pdb|3T00|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With Vanadate
pdb|3T01|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With
Phosphonoformate
Length = 427
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 36/201 (17%)
Query: 73 VFPSLTFPNHYSIVTGLYPAYHGIINNHFVDPYTGDTFTMASHEPKWWLGEPLWETVTNH 132
V PS T PN+ SI TG PA HGI N+ +P TG+ M ++PK+ +++ +
Sbjct: 66 VIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMM--NDPKFLRAPTIFQAFYDA 123
Query: 133 GLKAATYFWPG---SEVKKG-SWNCPKGFCMNYNGS---VPFEDRVDTVLSYFDLPSSEI 185
G + A + + KG ++ + C + S E +D ++ P E+
Sbjct: 124 GARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEV 183
Query: 186 PSFM-------------------TLYFEDPDHQGHKVGPDDPEITEAVARIDRMIGRLID 226
S +Y D+ HK P PE DR + L D
Sbjct: 184 YSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAEL-D 242
Query: 227 GIEKRGVFEDVTIVMVGDHGM 247
G+ IV+ DHGM
Sbjct: 243 GL-------GAAIVVTADHGM 256
>pdb|3T02|A Chain A, Crystal Structure Of Phosphonoacetate Hydrolase From
Sinorhizobium Meliloti 1021 In Complex With
Phosphonoacetate
Length = 427
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 36/201 (17%)
Query: 73 VFPSLTFPNHYSIVTGLYPAYHGIINNHFVDPYTGDTFTMASHEPKWWLGEPLWETVTNH 132
V PS PN+ SI TG PA HGI N+ +P TG+ M ++PK+ +++ +
Sbjct: 66 VIPSFANPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMM--NDPKFLRAPTIFQAFYDA 123
Query: 133 GLKAATYFWPG---SEVKKG-SWNCPKGFCMNYNGS---VPFEDRVDTVLSYFDLPSSEI 185
G + A + + KG ++ + C + S E +D ++ P E+
Sbjct: 124 GARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEV 183
Query: 186 PSFM-------------------TLYFEDPDHQGHKVGPDDPEITEAVARIDRMIGRLID 226
S +Y D+ HK P PE DR + L D
Sbjct: 184 YSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAEL-D 242
Query: 227 GIEKRGVFEDVTIVMVGDHGM 247
G+ IV+ DHGM
Sbjct: 243 GL-------GAAIVVTADHGM 256
>pdb|3O24|A Chain A, Crystal Structure Of The Brevianamide F Prenyltransferase
Ftmpt1 From Aspergillus Fumigatus
pdb|3O2K|A Chain A, Crystal Structure Of Brevianamide F Prenyltransferase
Complexed With Brevianamide F And Dimethylallyl
S-Thiolodiphosphate
Length = 474
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 132 HGLKAATYFWPGSEVKKGSWNCPKGFCMNYNGSVPFEDRVDTVLSYFDLPSSEIPSFMTL 191
GL+ +FW ++++G + P+GFC S FE ++ +F L S+ P
Sbjct: 324 RGLELLRHFWADIQMREGYYTMPRGFCELGKSSAGFE---APMMFHFHLDGSQSP----- 375
Query: 192 YFEDPDHQGHKVGPDDPEITEAVARIDRMIG 222
F DP G + ++ E + R +G
Sbjct: 376 -FPDPQMYVCVFGMNSRKLVEGLTTFYRRVG 405
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 197 DHQGHKVGPDDPEITEAVARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHG 246
D+ GH G + E V R+D +G D ++K G+ D +V+ DHG
Sbjct: 300 DYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDGI--DYVVVLTADHG 347
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 39 SSDGFRFGYQFKTSTPNIHRLINNGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGIIN 98
S+D F Q+ T + RL + G G + T P H +I+TG P+ GII
Sbjct: 52 SADLFSEYRQYYTG--GLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGIIA 109
Query: 99 NHFVD 103
N++ D
Sbjct: 110 NNWFD 114
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 213 AVARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMV 248
+ +D +GR+I+ +++ +F++ +V DHG+
Sbjct: 282 CITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGIC 317
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVGTC 251
V R+D IGR++D + ++G ++ ++ + D+G G
Sbjct: 287 VERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGAL 324
>pdb|2V9A|A Chain A, Structure Of Citrate-Free Periplasmic Domain Of Sensor
Histidine Kinase Cita
pdb|2V9A|B Chain B, Structure Of Citrate-Free Periplasmic Domain Of Sensor
Histidine Kinase Cita
Length = 133
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 38/141 (26%)
Query: 208 PEITEAVARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVGTCDKKLIFLDDLASWIEI 267
PE+ EAV + D + R+ I+ F D T + VGD ++L +
Sbjct: 27 PELVEAVQKRD--LARIKALIDPMRSFSDATYITVGD-----ASGQRLYHV--------- 70
Query: 268 PAEWVQSYSPLLAIRPPAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAA 327
NP +I + M G + N K+ KG L S L +
Sbjct: 71 --------------------NPDEIGKSMEGGDSDEALINAKSYVSVRKGSLGSSLRGKS 110
Query: 328 --SDRIPPIIGLIEEGFKVEQ 346
D +IG++ G+ +EQ
Sbjct: 111 PIQDATGKVIGIVSVGYTIEQ 131
>pdb|1P0Z|A Chain A, Sensor Kinase Cita Binding Domain
pdb|1P0Z|B Chain B, Sensor Kinase Cita Binding Domain
pdb|1P0Z|C Chain C, Sensor Kinase Cita Binding Domain
pdb|1P0Z|D Chain D, Sensor Kinase Cita Binding Domain
pdb|1P0Z|E Chain E, Sensor Kinase Cita Binding Domain
pdb|1P0Z|F Chain F, Sensor Kinase Cita Binding Domain
pdb|1P0Z|G Chain G, Sensor Kinase Cita Binding Domain
pdb|1P0Z|H Chain H, Sensor Kinase Cita Binding Domain
pdb|1P0Z|I Chain I, Sensor Kinase Cita Binding Domain
pdb|1P0Z|J Chain J, Sensor Kinase Cita Binding Domain
Length = 131
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 38/141 (26%)
Query: 208 PEITEAVARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHGMVGTCDKKLIFLDDLASWIEI 267
PE+ EAV + D + R+ I+ F D T + VGD ++L +
Sbjct: 23 PELVEAVQKRD--LARIKALIDPMRSFSDATYITVGD-----ASGQRLYHV--------- 66
Query: 268 PAEWVQSYSPLLAIRPPAGYNPSDIVEKMNEGLKSGKVENGKNLKVYLKGELPSRLHYAA 327
NP +I + M G + N K+ KG L S L +
Sbjct: 67 --------------------NPDEIGKSMEGGDSDEALINAKSYVSVRKGSLGSSLRGKS 106
Query: 328 --SDRIPPIIGLIEEGFKVEQ 346
D +IG++ G+ +EQ
Sbjct: 107 PIQDATGKVIGIVSVGYTIEQ 127
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 245 HGMVGTCDKKL-IFLDDLASWIEIPAEWVQSYSPLLAIRPPAGYNPSDIVEKMNE 298
HG + ++ L +F A W+ I + V ++ P A+ P GY P+ +VE++NE
Sbjct: 35 HGSLPATERVLELFAQSGAQWLVILGD-VLNHGPRNAL--PEGYAPAKVVERLNE 86
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHG 246
+ ID +GR+ +++ G ++D I+ DHG
Sbjct: 294 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 326
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHG 246
+ ID +GR+ +++ G ++D I+ DHG
Sbjct: 293 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 325
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 214 VARIDRMIGRLIDGIEKRGVFEDVTIVMVGDHG 246
+ +D +GR+ +++ G ++D I+ DHG
Sbjct: 294 ITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHG 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,579,927
Number of Sequences: 62578
Number of extensions: 635513
Number of successful extensions: 1267
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 31
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)