BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046092
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver
Somniferum
Length = 311
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 6 TLREQLGDLDDLSEEVIDRTVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAYTRLMG 65
T E LGD D L+EE ID VN L+ ++ ++ GWP Y+ SK +NAYTR++
Sbjct: 192 TALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLA 251
Query: 66 KILSDRPDGEKIYINCFCPGWVKTAMTGWAGNISAEDGADTGVWLALLPDQAITGKFFGE 125
+ K +NC CPG VKT M GN +AE+GA+ V +AL PD +G FF +
Sbjct: 252 NKIP------KFQVNCVCPGLVKTEMNYGIGNYTAEEGAEHVVRIALFPDDGPSG-FFYD 304
Query: 126 RREIS 130
E+S
Sbjct: 305 CSELS 309
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 15 DDLSEEVIDRTVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDG 74
+ ++EE + +N F++ + G Q GWP + Y ++K+ V +R+ + LS++ G
Sbjct: 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSA--YGVTKIGVTVLSRIHARKLSEQRKG 217
Query: 75 EKIYINCFCPGWVKTAMTGWAGNISAEDGADTGVWLALLPDQA--ITGKFFGERR 127
+KI +N CPGWV+T M G S E+GA+T V+LALLP A G+F E+R
Sbjct: 218 DKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 272
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 15 DDLSEEVIDRTVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDG 74
+ ++EE + +N F++ + G Q GWP + Y ++K+ V +R+ + LS++ G
Sbjct: 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSA--YGVTKIGVTVLSRIHARKLSEQRKG 217
Query: 75 EKIYINCFCPGWVKTAMTGWAGNISAEDGADTGVWLALLPDQA--ITGKFFGERR 127
+KI +N CPGWV+T M G S E+GA+T V+LALLP A G+F E+R
Sbjct: 218 DKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 272
>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 15 DDLSEEVIDRTVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDG 74
+ ++EE + +N F++ ++G + GW + + Y ++K+ V+ +R+ + L ++ G
Sbjct: 160 ETITEEELVGLMNKFVEDTKNGVHRKEGW--SDSTYGVTKIGVSVLSRIYARKLREQRAG 217
Query: 75 EKIYINCFCPGWVKTAMTGWAGNISAEDGADTGVWLALLPDQA--ITGKFFGERREI 129
+KI +N CPGWV+T M G S E GA+T V+LALLP A G+F +++ +
Sbjct: 218 DKILLNACCPGWVRTDMGGPKAPKSPEVGAETPVYLALLPSDAEGPHGQFVTDKKVV 274
>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed
With Nadp+
Length = 274
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 1 RLRDLTLREQLGDLDDLSEEVIDRTVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAY 60
R TL E GDL DL + F++ ++ + GWP + Y +SKL V
Sbjct: 154 RFHSETLTE--GDLVDL--------MKKFVEDTKNEVHEREGWPNS--PYGVSKLGVTVL 201
Query: 61 TRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWAGNISAEDGADTGVWLALLPDQA 117
+R++ + L ++ ++I +N CPG VKT M G + E+GA+T V+LALLP A
Sbjct: 202 SRILARRLDEKRKADRILVNACCPGPVKTDMDGKDSIRTVEEGAETPVYLALLPPDA 258
>pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
Length = 250
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 25 TVNTFLQQVEDGTWQSGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCP 84
T+++ L + D T S +P Y MSK A+N + R + L D + + + FCP
Sbjct: 149 TISSGLGSITDNTSGSAQFP--VLAYRMSKAAINMFGRTLAVDLKD----DNVLVVNFCP 202
Query: 85 GWVKTAMTGWAGNISAEDGADTGVWLALLPDQAITGKFF 123
GWV+T + G ++ E + D + G+FF
Sbjct: 203 GWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHNGRFF 241
>pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|B Chain B, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|C Chain C, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|D Chain D, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
Length = 263
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK AV +T+ + + ++ + I +NC CPG+VKTAM
Sbjct: 157 AHYSASKFAVFGWTQALAREMAPK----NIRVNCVCPGFVKTAM 196
>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC0|B Chain B, Crystal Structure Of F189w Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPGWV+T M
Sbjct: 177 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGWVETPM 214
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
T+Y +K + +++ + + ++ R I +NC PG++K+AMT
Sbjct: 171 TNYCAAKAGLIGFSKALAQEIASR----NITVNCIAPGFIKSAMT 211
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 10 QLGDLDDLSEEVIDR--TVNTFLQ---------QVEDG---------TWQSGGWPQTYTD 49
G + D++ E DR T+NT Q +E G T Q+ P+ +
Sbjct: 119 SFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPK-HAV 177
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK A+ + R M ++D+ KI +N PG +KT M
Sbjct: 178 YSGSKGAIETFARCMAIDMADK----KITVNVVAPGGIKTDM 215
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 10 QLGDLDDLSEEVIDR--TVNTFLQ---------QVEDG---------TWQSGGWPQTYTD 49
G + D++ E DR T+NT Q +E G T Q+ P+ +
Sbjct: 119 SFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPK-HAV 177
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK A+ + R M ++D+ KI +N PG +KT M
Sbjct: 178 YSGSKGAIETFARCMAIDMADK----KITVNVVAPGGIKTDM 215
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTG 93
+Y SK + +++ + + ++ R + +NC PG++++AMTG
Sbjct: 154 ANYCASKAGLIGFSKSLAQEIASR----NVTVNCIAPGFIESAMTG 195
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTG 93
+Y SK + +++ + + ++ R + +NC PG++++AMTG
Sbjct: 151 ANYCASKAGLIGFSKSLAQEIASR----NVTVNCIAPGFIESAMTG 192
>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
pdb|3FTP|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Burkholderia Pseudomallei At 2.05 A
Resolution
Length = 270
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 40 SGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
S G P +Y+ +K V TR + + + R I +NC PG++ T MT
Sbjct: 168 SAGNPG-QVNYAAAKAGVAGMTRALAREIGSR----GITVNCVAPGFIDTDMT 215
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWA 95
YS SK AV T+ + L+ P G I +N +CPG VKT M WA
Sbjct: 152 YSSSKFAVRGLTQTAARDLA--PLG--ITVNGYCPGIVKTPM--WA 191
>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DC1|B Chain B, Crystal Structure Of Y202f Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 177 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 214
>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase
pdb|1W4Z|B Chain B, Structure Of Actinorhodin Polyketide (Actiii) Reductase
Length = 281
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 177 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 214
>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RH4|B Chain B, Actinorhodin Ketoreductase, Actkr, With Nadph And
Inhibitor Emodin
pdb|2RHC|B Chain B, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
pdb|2RHC|A Chain A, Actinorhodin Ketordeuctase, Actkr, With Nadp+ And
Inhibitor Emodin
Length = 277
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 173 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 210
>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
pdb|4DBZ|B Chain B, Crystal Structure Of V151l Actinorhodin Polyketide
Ketoreductase With Nadph
Length = 281
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 177 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 214
>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3CSD|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3QRW|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3QRW|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph
pdb|3RI3|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
pdb|3RI3|A Chain A, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To
Nadph And The Inhibitor Emodin
Length = 281
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 177 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 214
>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
pdb|2RHR|A Chain A, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
Length = 277
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 173 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 210
>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|B Chain B, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|C Chain C, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|D Chain D, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
Length = 261
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 47 YTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
++ Y++SK A+ T+ + L+ R I +NC PG +KT+ +
Sbjct: 162 FSPYNVSKTALLGLTKTLAIELAPR----NIRVNCLAPGLIKTSFS 203
>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7G|B Chain B, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp
Bound
pdb|1X7H|A Chain A, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1X7H|B Chain B, Actinorhodin Polyketide Ketoreductase, With Nadph Bound
pdb|1XR3|A Chain A, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
pdb|1XR3|B Chain B, Actinorhodin Polyketide Ketoreductase With Nadp And The
Inhibitor Isoniazid Bound
Length = 261
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 157 YSASKHGVVGFTKALGLELAR----TGITVNAVCPGFVETPM 194
>pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate
Dehydrogenase
pdb|1WMB|B Chain B, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate
Dehydrogenase
pdb|1X1T|A Chain A, Crystal Structure Of D-3-hydroxybutyrate Dehydrogenase
From Pseudomonas Fragi Complexed With Nad+
pdb|2ZTL|A Chain A, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|B Chain B, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|C Chain C, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTL|D Chain D, Closed Conformation Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+ And L-3-Hydroxybutyrate
pdb|2ZTV|A Chain A, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|B Chain B, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|C Chain C, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
pdb|2ZTV|D Chain D, The Binary Complex Of D-3-Hydroxybutyrate Dehydrogenase
With Nad+
Length = 260
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
+ Y +K V +T K+ + G+ I N CPGWV+T +
Sbjct: 153 SAYVAAKHGVVGFT----KVTALETAGQGITANAICPGWVRTPLV 193
>pdb|3VE1|A Chain A, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|C Chain C, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE2|A Chain A, The 2.1 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis
pdb|3VE2|B Chain B, The 2.1 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis
Length = 658
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 92 TGWAGNISAEDGADTGVWLALLPDQAITGKFFGERRE 128
T W+GN S ++G + + D+ ITGK E R+
Sbjct: 523 TSWSGNASDKEGGNRAEFTVNFADKKITGKLTAENRQ 559
>pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph
pdb|3SJU|B Chain B, Hedamycin Polyketide Ketoreductase Bound To Nadph
Length = 279
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
Y+ SK V +T+ +G L+ I +N CPG+V+T M
Sbjct: 175 YTASKHGVVGFTKSVGFELAK----TGITVNAVCPGYVETPM 212
>pdb|4IIU|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIV|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
Length = 267
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
+YS +K + T+ + L+ R KI +NC PG + T M
Sbjct: 175 VNYSAAKAGIIGATKALAIELAKR----KITVNCIAPGLIDTGM 214
>pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From
Mycobacterium Tuberculosis
pdb|1NFF|B Chain B, Crystal Structure Of Rv2002 Gene Product From
Mycobacterium Tuberculosis
pdb|1NFQ|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|B Chain B, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|C Chain C, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFQ|D Chain D, Rv2002 Gene Product From Mycobacterium Tuberculosis
Length = 260
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGW 94
Y+ +K AV T+ L P G I +N PG VKT MT W
Sbjct: 153 YTATKFAVRGLTK--STALELGPSG--IRVNSIHPGLVKTPMTDW 193
>pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|B Chain B, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|C Chain C, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
pdb|2ZTM|D Chain D, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Length = 260
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
+ Y +K V +T K+ + G+ I N CPGWV++ +
Sbjct: 153 SAYVAAKHGVVGFT----KVTALETAGQGITANAICPGWVRSPLV 193
>pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From
Salmonella Enterica Subsp. Enterica Serovar Typhi Str.
Ct18
Length = 258
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWA 95
Y+ SK A T M ++L+D + +NC PG +T+M A
Sbjct: 167 YATSKFA----TEGMMQVLADEYQNRSLRVNCINPGGTRTSMRASA 208
>pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|B Chain B, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|C Chain C, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
pdb|2ZTU|D Chain D, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase
Complexed With Nad+
Length = 260
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 48 TDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
+ Y +K V +T K+ + G+ I N CPGWV+ +
Sbjct: 153 SAYVAAKHGVVGFT----KVTALETAGQGITANAICPGWVRAPLV 193
>pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus
Thermophilus Hb8
pdb|2EKP|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|B Chain B, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|C Chain C, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|D Chain D, Structure Of Tt0495 Protein From Thermus Thermophilus
Length = 239
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 37 TWQSGGWPQTYTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
T+ +GG P Y+ +K A+ TR + K + I +N CPG+V+T T
Sbjct: 132 TFTAGG-PVPIPAYTTAKTALLGLTRALAKEWARL----GIRVNLLCPGYVETEFT 182
>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex
pdb|2B4Q|B Chain B, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex
Length = 276
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 45 QTYTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWAGN 97
Q Y Y SK A++ +R++ K L GE I +N PG + MT N
Sbjct: 178 QAYA-YGPSKAALHQLSRMLAKELV----GEHINVNVIAPGRFPSRMTRHIAN 225
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 58 NAYTRLMGKILSDRPD------GEKIYINCFCPGWVKTAMTGW 94
+AYT G +L G I N CPG ++T MT W
Sbjct: 153 SAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQW 195
>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|B Chain B, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|C Chain C, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|D Chain D, Crystal Structure Of A Mammalian Reductase
Length = 260
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKT 89
Y++SK A+ T+ + L+ R I +NC PG +KT
Sbjct: 164 YNVSKTALLGLTKNLAVELAPR----NIRVNCLAPGLIKT 199
>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|B Chain B, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|C Chain C, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|D Chain D, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|E Chain E, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|F Chain F, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|G Chain G, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|H Chain H, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|3VDR|A Chain A, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|B Chain B, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|C Chain C, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|D Chain D, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDQ|A Chain A, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|B Chain B, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|C Chain C, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|D Chain D, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
Length = 260
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 66 KILSDRPDGEKIYINCFCPGWVKTAMT 92
K+ + G+ I N CPGWV+T +
Sbjct: 167 KVTALENAGKGITCNAICPGWVRTPLV 193
>pdb|3CSR|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSZ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT0|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT1|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT5|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 159
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 85 GWVKTAMTGWAGNISAEDGADTGVWLALLPDQAITGKFFG 124
GW K A+ G GN+ +E + G+W L D+ T FG
Sbjct: 29 GWTKQAICGMLGNMQSESTINPGLWQNL--DEGNTSLGFG 66
>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4B79|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery
Length = 242
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAM 91
YS SK A+ TR L+ E+I +N PGW+ T +
Sbjct: 147 YSASKGAIVQLTR----SLACEYAAERIRVNAIAPGWIDTPL 184
>pdb|4G29|A Chain A, Structure Of The Catalytic Domain Of The Salmonella
Virulence Factor Ssei
Length = 186
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 47 YTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKT 89
YTD+S S +A NAY L ++ S+ G K+++ P W T
Sbjct: 135 YTDFSNSSIAANAYDALPRELESESXAG-KVFVT--SPRWFNT 174
>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3F5Q|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073
pdb|3GZ4|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
pdb|3GZ4|B Chain B, Crystal Structure Of Putative Short Chain Dehydrogenase
From Escherichia Coli Cft073 Complexed With Nadph
Length = 262
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWA 95
Y+ SK A T M ++L+D +++ +NC PG +TAM A
Sbjct: 167 YAASKFA----TEGMMQVLADEYQ-QRLRVNCINPGGTRTAMRASA 207
>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3F5S|B Chain B, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301
pdb|3GY0|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase
From Shigella Flexneri 2a Str. 301 Complexed With Nadp
Length = 255
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWA 95
Y+ SK A T M ++L+D +++ +NC PG +TAM A
Sbjct: 163 YAASKFA----TEGMMQVLADEYQ-QRLRVNCINPGGTRTAMRASA 203
>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
pdb|3F1L|B Chain B, The 0.95 A Structure Of An Oxidoreductase, Ycik From
E.Coli
Length = 252
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGWA 95
Y+ SK A T M ++L+D +++ +NC PG +TAM A
Sbjct: 165 YAASKFA----TEGMMQVLADEYQ-QRLRVNCINPGGTRTAMRASA 205
>pdb|3CSQ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|B Chain B, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|C Chain C, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|D Chain D, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 334
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 85 GWVKTAMTGWAGNISAEDGADTGVWLALLPDQAITGKFFG 124
GW K A+ G GN+ +E + G+W L D+ T FG
Sbjct: 29 GWTKQAICGMLGNMQSESTINPGLWQNL--DEGNTSLGFG 66
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 49 DYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMT 92
+Y+ SK + +T+ + K + + IY N PG +KT MT
Sbjct: 154 NYAASKAGLIGFTKSIAKEFAAKG----IYCNAVAPGIIKTDMT 193
>pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|B Chain B, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|C Chain C, Rv2002 Gene Product From Mycobacterium Tuberculosis
pdb|1NFR|D Chain D, Rv2002 Gene Product From Mycobacterium Tuberculosis
Length = 260
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 50 YSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKTAMTGW 94
Y+ +K AV T+ L P G I +N PG VKT T W
Sbjct: 153 YTATKFAVRGLTK--STALELGPSG--IRVNSIHPGLVKTPXTDW 193
>pdb|4G2B|A Chain A, Structure Of The Catalytic Domain Of The Salmonella
Virulence Factor Ssei
pdb|4G2B|B Chain B, Structure Of The Catalytic Domain Of The Salmonella
Virulence Factor Ssei
Length = 186
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 47 YTDYSMSKLAVNAYTRLMGKILSDRPDGEKIYINCFCPGWVKT 89
YTD+S S +A NAY L ++ S+ G K+++ P W T
Sbjct: 135 YTDFSNSSIAANAYDALPRELESESMAG-KVFVT--SPRWFNT 174
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 7 LREQLGDLDDLSEEVIDRTVNTFLQQVEDGTWQ 39
L+E + + EEV D N L+ VE+ TWQ
Sbjct: 34 LKELVEPVSRFFEEVNDPAKNDALEMVEETTWQ 66
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 7 LREQLGDLDDLSEEVIDRTVNTFLQQVEDGTWQ 39
L+E + + EEV D N L+ VE+ TWQ
Sbjct: 54 LKELVEPVSRFFEEVNDPAKNDALEMVEETTWQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,279,907
Number of Sequences: 62578
Number of extensions: 174386
Number of successful extensions: 454
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 51
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)