Query 046093
Match_columns 474
No_of_seqs 320 out of 1782
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 7.8E-42 2.7E-46 312.8 6.3 155 11-166 3-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 9E-34 3.1E-38 251.0 6.8 126 40-166 1-127 (128)
3 3zqc_A MYB3; transcription-DNA 100.0 6.5E-33 2.2E-37 246.8 11.2 130 13-147 1-130 (131)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 9E-32 3.1E-36 230.2 9.7 105 11-116 1-105 (105)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 8.2E-32 2.8E-36 238.4 9.6 114 2-116 15-128 (128)
6 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-31 8.9E-36 228.8 7.9 104 14-118 1-104 (107)
7 3osg_A MYB21; transcription-DN 100.0 1.1E-30 3.6E-35 231.2 8.8 107 7-115 4-110 (126)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-29 5.1E-34 231.4 8.4 113 3-116 47-159 (159)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 3.1E-26 1E-30 195.8 6.6 103 64-166 1-104 (105)
10 3osg_A MYB21; transcription-DN 99.9 5E-26 1.7E-30 201.3 7.4 106 62-167 6-111 (126)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 6.7E-26 2.3E-30 195.0 5.6 102 67-168 1-103 (107)
12 3zqc_A MYB3; transcription-DNA 99.9 8.5E-25 2.9E-29 194.4 8.2 102 67-168 2-104 (131)
13 2dim_A Cell division cycle 5-l 99.8 6E-21 2.1E-25 152.6 2.2 67 8-75 3-69 (70)
14 2dim_A Cell division cycle 5-l 99.7 1.9E-18 6.4E-23 138.1 8.2 65 62-126 4-69 (70)
15 2din_A Cell division cycle 5-l 99.6 1.1E-16 3.8E-21 126.4 6.1 61 60-121 2-62 (66)
16 1ign_A Protein (RAP1); RAP1,ye 99.6 8.1E-17 2.8E-21 155.9 6.3 106 9-115 3-200 (246)
17 2d9a_A B-MYB, MYB-related prot 99.6 2.7E-16 9.2E-21 121.9 7.0 56 62-117 3-59 (60)
18 2llk_A Cyclin-D-binding MYB-li 99.6 1.7E-16 5.8E-21 128.6 6.0 58 54-112 10-67 (73)
19 2d9a_A B-MYB, MYB-related prot 99.6 9.7E-17 3.3E-21 124.4 3.4 57 9-66 3-59 (60)
20 1gvd_A MYB proto-oncogene prot 99.6 1E-15 3.4E-20 115.4 6.8 51 65-115 1-52 (52)
21 1gvd_A MYB proto-oncogene prot 99.6 1.9E-16 6.4E-21 119.4 2.7 52 12-64 1-52 (52)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 9.9E-16 3.4E-20 115.3 6.6 51 65-115 1-52 (52)
23 1ign_A Protein (RAP1); RAP1,ye 99.6 3.1E-16 1.1E-20 151.8 4.1 103 63-165 4-199 (246)
24 2cu7_A KIAA1915 protein; nucle 99.6 1.9E-15 6.6E-20 121.4 7.3 58 61-118 3-60 (72)
25 1ity_A TRF1; helix-turn-helix, 99.6 2.8E-15 9.4E-20 119.5 8.0 61 61-121 4-67 (69)
26 2juh_A Telomere binding protei 99.6 2.8E-16 9.6E-21 138.7 2.4 83 8-91 11-103 (121)
27 1guu_A C-MYB, MYB proto-oncoge 99.6 3.1E-16 1.1E-20 118.1 1.9 52 12-64 1-52 (52)
28 1ity_A TRF1; helix-turn-helix, 99.6 4.4E-16 1.5E-20 124.1 2.8 63 8-71 4-68 (69)
29 2roh_A RTBP1, telomere binding 99.6 1.7E-15 5.7E-20 133.9 4.6 79 9-88 26-114 (122)
30 1x41_A Transcriptional adaptor 99.5 1E-14 3.4E-19 113.4 6.2 54 62-115 3-57 (60)
31 3sjm_A Telomeric repeat-bindin 99.5 1.1E-14 3.8E-19 115.0 6.5 53 65-117 9-64 (64)
32 3sjm_A Telomeric repeat-bindin 99.5 1.9E-15 6.3E-20 119.4 1.6 56 10-66 7-64 (64)
33 1x41_A Transcriptional adaptor 99.5 3.1E-15 1.1E-19 116.3 2.7 56 9-65 3-58 (60)
34 1w0t_A Telomeric repeat bindin 99.5 2E-14 7E-19 108.8 6.6 49 66-114 1-52 (53)
35 2din_A Cell division cycle 5-l 99.5 1.4E-15 4.8E-20 120.0 -0.5 60 7-69 2-61 (66)
36 2yum_A ZZZ3 protein, zinc fing 99.5 2.3E-14 8E-19 115.6 6.1 59 62-120 3-67 (75)
37 2juh_A Telomere binding protei 99.5 7.1E-15 2.4E-19 129.7 2.6 82 61-142 11-103 (121)
38 2yum_A ZZZ3 protein, zinc fing 99.5 9.7E-15 3.3E-19 117.9 1.2 60 9-69 3-67 (75)
39 2elk_A SPCC24B10.08C protein; 99.5 8.6E-14 2.9E-18 107.5 6.5 50 63-112 5-56 (58)
40 1w0t_A Telomeric repeat bindin 99.4 1.3E-14 4.5E-19 109.9 1.6 49 13-62 1-51 (53)
41 2elk_A SPCC24B10.08C protein; 99.4 2.3E-14 7.8E-19 110.8 2.2 51 10-61 5-56 (58)
42 2cu7_A KIAA1915 protein; nucle 99.4 3.2E-14 1.1E-18 114.3 1.2 59 7-67 2-60 (72)
43 2llk_A Cyclin-D-binding MYB-li 99.4 6E-14 2.1E-18 113.7 2.8 62 2-67 11-72 (73)
44 2roh_A RTBP1, telomere binding 99.4 1.7E-13 6E-18 121.0 5.2 79 63-141 27-116 (122)
45 2ltp_A Nuclear receptor corepr 99.0 8.1E-14 2.8E-18 116.6 0.0 56 60-115 9-64 (89)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.2E-12 1.4E-16 102.8 5.8 51 63-113 14-68 (73)
47 2ckx_A NGTRF1, telomere bindin 99.3 2.3E-12 7.9E-17 106.8 4.2 69 15-84 1-79 (83)
48 2yus_A SWI/SNF-related matrix- 99.2 4.9E-12 1.7E-16 103.8 5.2 48 64-111 15-62 (79)
49 2aje_A Telomere repeat-binding 99.2 3.2E-12 1.1E-16 110.3 4.1 78 8-86 7-94 (105)
50 2yus_A SWI/SNF-related matrix- 99.2 2.4E-12 8.2E-17 105.7 2.9 53 6-60 10-62 (79)
51 2aje_A Telomere repeat-binding 99.2 7.4E-12 2.5E-16 108.0 5.1 63 63-125 9-81 (105)
52 2ltp_A Nuclear receptor corepr 98.8 2.3E-12 7.9E-17 107.8 0.0 54 7-62 9-62 (89)
53 2ckx_A NGTRF1, telomere bindin 99.2 3.3E-11 1.1E-15 99.8 6.7 52 68-119 1-62 (83)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 5.4E-12 1.9E-16 102.2 1.3 56 6-62 10-68 (73)
55 2cjj_A Radialis; plant develop 99.0 3.8E-10 1.3E-14 95.3 5.5 50 66-115 7-60 (93)
56 1x58_A Hypothetical protein 49 99.0 7.6E-10 2.6E-14 86.8 6.4 50 66-115 7-59 (62)
57 2cjj_A Radialis; plant develop 98.8 7.4E-10 2.5E-14 93.6 0.7 48 13-61 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.7 1.6E-08 5.3E-13 78.8 6.5 48 66-113 11-58 (61)
59 2eqr_A N-COR1, N-COR, nuclear 98.6 1.5E-08 5E-13 78.9 2.4 52 7-60 5-56 (61)
60 1x58_A Hypothetical protein 49 98.5 1.8E-08 6E-13 79.1 1.7 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.5 7.4E-08 2.5E-12 77.7 5.1 50 64-114 5-58 (72)
62 3hm5_A DNA methyltransferase 1 98.5 7.7E-08 2.6E-12 81.2 5.3 66 50-119 17-87 (93)
63 2iw5_B Protein corest, REST co 98.4 4.1E-07 1.4E-11 87.7 6.8 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.1E-07 3.7E-12 76.7 1.1 51 10-62 4-57 (72)
65 1fex_A TRF2-interacting telome 98.3 7.6E-07 2.6E-11 69.1 5.2 47 67-113 2-58 (59)
66 2xag_B REST corepressor 1; ami 98.3 5.5E-07 1.9E-11 95.3 5.6 45 68-112 381-425 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.2 2.2E-06 7.7E-11 69.3 6.1 49 67-115 8-60 (73)
68 1wgx_A KIAA1903 protein; MYB D 98.1 5.5E-07 1.9E-11 72.9 1.4 48 14-62 8-58 (73)
69 1fex_A TRF2-interacting telome 98.1 6.6E-07 2.2E-11 69.4 1.1 48 14-62 2-58 (59)
70 2iw5_B Protein corest, REST co 98.0 1.3E-06 4.4E-11 84.3 2.4 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 97.7 8.8E-05 3E-09 57.9 6.7 49 62-110 4-53 (63)
72 4eef_G F-HB80.4, designed hema 97.6 1.2E-05 4.1E-10 65.0 0.7 44 14-58 20-66 (74)
73 4eef_G F-HB80.4, designed hema 97.5 2.5E-05 8.7E-10 63.1 1.2 43 67-109 20-66 (74)
74 2yqk_A Arginine-glutamic acid 97.5 4.5E-05 1.5E-09 59.6 2.5 50 8-59 3-53 (63)
75 1ug2_A 2610100B20RIK gene prod 97.5 0.00012 4.2E-09 61.3 5.0 46 69-114 35-83 (95)
76 1ofc_X ISWI protein; nuclear p 97.4 0.00031 1.1E-08 70.6 7.6 99 15-114 111-275 (304)
77 2lr8_A CAsp8-associated protei 96.4 4E-05 1.4E-09 61.0 0.0 44 69-113 16-62 (70)
78 4iej_A DNA methyltransferase 1 97.1 0.00049 1.7E-08 58.0 5.4 61 55-119 22-87 (93)
79 2xag_B REST corepressor 1; ami 97.0 0.00022 7.4E-09 75.7 2.4 46 13-60 379-424 (482)
80 4a69_C Nuclear receptor corepr 97.0 0.001 3.6E-08 55.9 6.1 44 67-110 43-86 (94)
81 2crg_A Metastasis associated p 97.0 0.0013 4.5E-08 52.4 6.1 44 67-110 8-52 (70)
82 3hm5_A DNA methyltransferase 1 97.0 0.00015 5.2E-09 61.1 0.6 59 104-166 20-83 (93)
83 2ebi_A DNA binding protein GT- 96.7 0.00089 3.1E-08 54.7 2.9 50 66-115 3-66 (86)
84 4a69_C Nuclear receptor corepr 96.6 0.00057 1.9E-08 57.5 1.6 44 14-59 43-86 (94)
85 2crg_A Metastasis associated p 96.5 0.00084 2.9E-08 53.5 1.7 45 13-59 7-52 (70)
86 2ebi_A DNA binding protein GT- 96.1 0.00054 1.9E-08 56.1 -1.2 49 13-61 3-63 (86)
87 1ug2_A 2610100B20RIK gene prod 96.1 0.0037 1.2E-07 52.4 3.5 45 15-60 34-80 (95)
88 4b4c_A Chromodomain-helicase-D 96.1 0.0054 1.8E-07 57.5 5.1 32 12-43 5-38 (211)
89 2lr8_A CAsp8-associated protei 95.0 0.0012 3.9E-08 52.7 0.0 47 14-62 14-62 (70)
90 2y9y_A Imitation switch protei 94.1 0.13 4.4E-06 53.0 8.5 103 15-117 124-294 (374)
91 4iej_A DNA methyltransferase 1 93.0 0.032 1.1E-06 47.0 1.5 49 12-61 28-80 (93)
92 4b4c_A Chromodomain-helicase-D 90.1 0.22 7.6E-06 46.4 4.2 37 7-43 127-163 (211)
93 1irz_A ARR10-B; helix-turn-hel 90.0 0.7 2.4E-05 36.3 6.2 48 65-112 5-57 (64)
94 2xb0_X Chromo domain-containin 83.0 0.6 2E-05 46.1 2.9 28 15-42 169-196 (270)
95 1ofc_X ISWI protein; nuclear p 82.5 1.7 5.9E-05 43.6 6.0 43 67-109 110-153 (304)
96 2xb0_X Chromo domain-containin 79.2 1.3 4.4E-05 43.8 3.7 26 69-94 170-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 66.3 2.7 9.4E-05 32.9 2.0 46 11-56 4-52 (64)
98 2li6_A SWI/SNF chromatin-remod 54.9 8.6 0.00029 32.8 3.3 39 77-115 53-99 (116)
99 2jrz_A Histone demethylase jar 53.9 15 0.00051 31.3 4.7 39 77-115 44-94 (117)
100 2lm1_A Lysine-specific demethy 51.8 18 0.00061 30.1 4.8 39 77-115 48-98 (107)
101 2cxy_A BAF250B subunit, HBAF25 48.0 20 0.00069 30.8 4.7 39 77-115 55-105 (125)
102 2eqy_A RBP2 like, jumonji, at 47.8 21 0.00072 30.7 4.7 39 77-115 46-96 (122)
103 1c20_A DEAD ringer protein; DN 45.8 23 0.0008 30.5 4.7 40 76-115 55-107 (128)
104 2kk0_A AT-rich interactive dom 43.2 27 0.00094 30.9 4.9 39 77-115 68-119 (145)
105 2rq5_A Protein jumonji; develo 43.0 25 0.00084 30.5 4.4 78 12-115 5-97 (121)
106 1kkx_A Transcription regulator 41.2 13 0.00044 32.2 2.3 38 78-115 53-98 (123)
107 2jxj_A Histone demethylase jar 39.2 16 0.00054 29.8 2.4 38 77-114 40-89 (96)
108 2y9y_A Imitation switch protei 35.0 52 0.0018 33.8 6.0 98 67-164 123-290 (374)
109 2rq5_A Protein jumonji; develo 34.0 11 0.00039 32.6 0.8 58 24-84 46-114 (121)
110 2li6_A SWI/SNF chromatin-remod 33.8 8.8 0.0003 32.7 0.0 39 24-63 53-98 (116)
111 1ig6_A MRF-2, modulator recogn 31.0 24 0.00081 29.4 2.3 39 77-115 37-88 (107)
112 2jvw_A Uncharacterized protein 29.8 12 0.00041 30.9 0.2 45 22-79 18-69 (88)
113 3cz6_A DNA-binding protein RAP 29.0 23 0.00079 32.5 1.9 29 10-41 110-146 (168)
114 2k27_A Paired box protein PAX- 27.5 2.8E+02 0.0097 23.5 8.9 95 14-113 23-137 (159)
115 3i4p_A Transcriptional regulat 25.1 57 0.0019 28.5 3.8 45 73-118 3-48 (162)
116 1ig6_A MRF-2, modulator recogn 25.1 18 0.00063 30.1 0.5 40 24-63 37-87 (107)
117 2o8x_A Probable RNA polymerase 22.2 85 0.0029 22.6 3.8 43 70-114 16-58 (70)
118 2jrz_A Histone demethylase jar 22.1 16 0.00056 31.1 -0.4 39 24-62 44-92 (117)
119 3cz6_A DNA-binding protein RAP 21.9 66 0.0022 29.5 3.5 24 63-86 110-141 (168)
120 1c20_A DEAD ringer protein; DN 20.4 18 0.00062 31.2 -0.5 40 24-63 56-106 (128)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=7.8e-42 Score=312.83 Aligned_cols=155 Identities=30% Similarity=0.524 Sum_probs=111.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCC-Ch
Q 046093 11 GLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGN-RW 89 (474)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~-~W 89 (474)
+++|++||+|||++|+++|.+||..+|..||+.|++ |+++||++||.++|+|.+++++||++||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 378999999999999999999998899999999998 9999999999999999999999999999999999999995 79
Q ss_pred hHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHHhhccCCCCCchhhhcchhhhhhhc
Q 046093 90 SVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDKRKAGKTSRCATKKNKSYIINK 166 (474)
Q Consensus 90 ~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~IakrlpGRTdn~iknrw~s~~~~k 166 (474)
..||+.||+||++|||+||.++|+|.+++.+||.+||.+++.++..+|++|+.||+.+||||+++|||||+.+++++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887654
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=9e-34 Score=251.00 Aligned_cols=126 Identities=25% Similarity=0.419 Sum_probs=101.4
Q ss_pred cccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhcccccc
Q 046093 40 LPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGN-RWSVIASHLPGRTDNELKNYWNTHLSKKIHT 118 (474)
Q Consensus 40 IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~ 118 (474)
||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||+.|++||++||++||.++|+|.+++
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7899998 9999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCCCCcccCcchhhhcCCchHHhhccCCCCCchhhhcchhhhhhhc
Q 046093 119 FQGPVGGETLSLPKMVDVASASAAIDKRKAGKTSRCATKKNKSYIINK 166 (474)
Q Consensus 119 ~~~t~eEd~lil~~~~~~G~~Ws~IakrlpGRTdn~iknrw~s~~~~k 166 (474)
++||.+||.+++.++..+|++|+.||+.+||||++++++||+.+++++
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999887654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=6.5e-33 Score=246.79 Aligned_cols=130 Identities=37% Similarity=0.618 Sum_probs=108.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCCChhHH
Q 046093 13 KKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVI 92 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~I 92 (474)
.||+||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999998899999999998 999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHHhhccC
Q 046093 93 ASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDKRK 147 (474)
Q Consensus 93 Ak~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~Iakrl 147 (474)
|+.|||||++|||+||+++|++.+....++.+- +++ ......+|+.|++.+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~---~~p-~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI---LLP-DRSKKRKAADVPKKL 130 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC---CCC-CCC------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc---cCc-hhhhhhhhhhcchhc
Confidence 999999999999999999999999987765442 222 344467788888765
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=9e-32 Score=230.16 Aligned_cols=105 Identities=43% Similarity=0.794 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCCChh
Q 046093 11 GLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWS 90 (474)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~ 90 (474)
.++||+||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998799999999998 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHhhcccc
Q 046093 91 VIASHLPGRTDNELKNYWNTHLSKKI 116 (474)
Q Consensus 91 ~IAk~lpgRT~~qcR~RW~~~Lrp~i 116 (474)
.||+.|||||+.||++||+.+|++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8.2e-32 Score=238.43 Aligned_cols=114 Identities=39% Similarity=0.709 Sum_probs=103.3
Q ss_pred CCCcccccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHH
Q 046093 2 GRTPCCEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKL 81 (474)
Q Consensus 2 gR~~~~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~l 81 (474)
.||...++|.+++|+||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||.+|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 467788899999999999999999999999998789999999998 9999999999999999999999999999999999
Q ss_pred HHHhCCChhHHhhhCCCCCHHHHHHHHHHhhcccc
Q 046093 82 HASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKI 116 (474)
Q Consensus 82 V~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i 116 (474)
|.+||.+|..||+.|||||+.||++||+.+|++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999998764
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.6e-31 Score=228.81 Aligned_cols=104 Identities=28% Similarity=0.516 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHh
Q 046093 14 KGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVIA 93 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IA 93 (474)
||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhcccccc
Q 046093 94 SHLPGRTDNELKNYWNTHLSKKIHT 118 (474)
Q Consensus 94 k~lpgRT~~qcR~RW~~~Lrp~i~~ 118 (474)
+.|||||++|||+||+.++++..++
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.96 E-value=1.1e-30 Score=231.24 Aligned_cols=107 Identities=33% Similarity=0.614 Sum_probs=101.6
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhC
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLG 86 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G 86 (474)
..++.++||+||+|||++|+++|.+||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3468899999999999999999999995 99999999998 999999999999999999999999999999999999999
Q ss_pred CChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 87 NRWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 87 ~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
.+|..||+.|||||+.|||+||..++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988764
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.5e-29 Score=231.44 Aligned_cols=113 Identities=41% Similarity=0.722 Sum_probs=106.7
Q ss_pred CCcccccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHH
Q 046093 3 RTPCCEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLH 82 (474)
Q Consensus 3 R~~~~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV 82 (474)
||...++|.+++++||+|||++|+++|..||.++|..||+.|++ |++.||+.||.++|+|.+++++||++||.+|++++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 44566789999999999999999999999997789999999998 99999999999999999999999999999999999
Q ss_pred HHhCCChhHHhhhCCCCCHHHHHHHHHHhhcccc
Q 046093 83 ASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKI 116 (474)
Q Consensus 83 ~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i 116 (474)
.+||.+|..||+.|||||+.||++||+.++++++
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999998764
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.92 E-value=3.1e-26 Score=195.84 Aligned_cols=103 Identities=28% Similarity=0.447 Sum_probs=97.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHH
Q 046093 64 DLRRGNITTEEEETIIKLHASLGN-RWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAA 142 (474)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~ 142 (474)
++++++||++||++|+++|.+||. +|..||+.||+||++||+.||.++|.|.+++++||.+||.+++.++..+|++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhhcchhhhhhhc
Q 046093 143 IDKRKAGKTSRCATKKNKSYIINK 166 (474)
Q Consensus 143 IakrlpGRTdn~iknrw~s~~~~k 166 (474)
||+.+||||+++|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999887654
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.92 E-value=5e-26 Score=201.25 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=101.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchH
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASA 141 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws 141 (474)
.+..++++||+|||++|+++|.+||.+|..||+.|++|+++|||.||.++|.|.+++++||.+||.+++.++..+|++|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCchhhhcchhhhhhhcc
Q 046093 142 AIDKRKAGKTSRCATKKNKSYIINKD 167 (474)
Q Consensus 142 ~IakrlpGRTdn~iknrw~s~~~~k~ 167 (474)
.||+.+||||++++++||+.+.++..
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998876653
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.92 E-value=6.7e-26 Score=195.05 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCCCChHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHHhhc
Q 046093 67 RGNITTEEEETIIKLHASLGN-RWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDK 145 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~-~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~Iak 145 (474)
|++||+|||++|+++|.+||. +|..||..|++||++||+.||.++|+|.+++++||.+||.+++.++..+|++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 689999999999999999995 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhcchhhhhhhccc
Q 046093 146 RKAGKTSRCATKKNKSYIINKDD 168 (474)
Q Consensus 146 rlpGRTdn~iknrw~s~~~~k~~ 168 (474)
.+||||+++|++||+.++++...
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999988766543
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.91 E-value=8.5e-25 Score=194.43 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=97.9
Q ss_pred CCCCChHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHHhhc
Q 046093 67 RGNITTEEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDK 145 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~Iak 145 (474)
||+||+|||++|+++|.+|| .+|..||..||+||++||+.||.++|.|.+++++||.+||.+++.++..+|++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhcchhhhhhhccc
Q 046093 146 RKAGKTSRCATKKNKSYIINKDD 168 (474)
Q Consensus 146 rlpGRTdn~iknrw~s~~~~k~~ 168 (474)
.+||||+++|++||++++.+...
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998766543
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6e-21 Score=152.60 Aligned_cols=67 Identities=22% Similarity=0.506 Sum_probs=64.6
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHH
Q 046093 8 EKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEE 75 (474)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED 75 (474)
-.|.+++++||+|||++|+++|.+||..+|..||+.|++ |+++||++||.++|+|.+++++||++||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 458899999999999999999999998899999999998 9999999999999999999999999997
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=138.09 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhccccccCCCCCCCc
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQGPVGGE 126 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~t~eEd 126 (474)
.|.+++++||++||++|+++|.+|| .+|..||+.|++||++|||+||+++|+|.|++.+||.+||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999999997
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=126.38 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=58.3
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhccccccCCC
Q 046093 60 YLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQG 121 (474)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~~ 121 (474)
+|+|.+++++||+|||++|+++|+.||.+|..||+ ++|||++|||+||+++|+|.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 69999999999999999999999999999999999 88999999999999999999998654
No 16
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.65 E-value=8.1e-17 Score=155.90 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=92.2
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCCcccccccccccccccCCCCC-----------------
Q 046093 9 KVGLKKGKWTAKEDEILTKYIQANGIES-----WRSLPKKAGLLRCGKSCRLRWVNYLRTDLR----------------- 66 (474)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~n-----W~~IAk~l~~~Rt~kQCr~RW~n~L~p~lk----------------- 66 (474)
.+.++|++||+|||++|+.+|++||..+ |..||+.|+| ||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998532 9999999998 9999999999999999986
Q ss_pred ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 046093 67 ------------RGNITTEEEETIIKLHAS-L------------------------------------------------ 85 (474)
Q Consensus 67 ------------kg~WT~EED~~Ll~lV~~-~------------------------------------------------ 85 (474)
|.+||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999877 2
Q ss_pred -----CC----ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 86 -----GN----RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 86 -----G~----~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
|. .|..||+.+|+||..+.|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999988665
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.7e-16 Score=121.87 Aligned_cols=56 Identities=30% Similarity=0.484 Sum_probs=53.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhccccc
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWNTHLSKKIH 117 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~ 117 (474)
+|.+++++||+|||++|+++|.+|| .+|..||++|++||++|||+||+++|+|.|+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999999875
No 18
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=128.64 Aligned_cols=58 Identities=24% Similarity=0.352 Sum_probs=47.1
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhh
Q 046093 54 RLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHL 112 (474)
Q Consensus 54 r~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~L 112 (474)
.-||.++|+|.+++++||+|||++|+++|.+||.+|+.||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999 999999999998643
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=9.7e-17 Score=124.37 Aligned_cols=57 Identities=28% Similarity=0.507 Sum_probs=54.5
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCC
Q 046093 9 KVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLR 66 (474)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lk 66 (474)
.|.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999998799999999998 9999999999999999875
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=1e-15 Score=115.41 Aligned_cols=51 Identities=43% Similarity=0.792 Sum_probs=48.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 65 LRRGNITTEEEETIIKLHASLGN-RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
+++++||+|||++|+++|.+||. +|..||+.|++||++|||+||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 57899999999999999999996 7999999999999999999999999984
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=1.9e-16 Score=119.40 Aligned_cols=52 Identities=42% Similarity=0.754 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCC
Q 046093 12 LKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTD 64 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~ 64 (474)
|+|++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999997789999999998 99999999999999984
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=9.9e-16 Score=115.31 Aligned_cols=51 Identities=37% Similarity=0.608 Sum_probs=47.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 65 LRRGNITTEEEETIIKLHASLGN-RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
+++++||+|||++|+++|.+||. +|..||+.|++||++|||+||+++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999996 9999999999999999999999999984
No 23
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=3.1e-16 Score=151.82 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCC------hhHHhhhCCCCCHHHHHHHHHHhhccccc-------------------
Q 046093 63 TDLRRGNITTEEEETIIKLHASLGNR------WSVIASHLPGRTDNELKNYWNTHLSKKIH------------------- 117 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G~~------W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~------------------- 117 (474)
+.+++++||+|||++|+++|.+||.+ |..||+.|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 35688999999999999999999864 99999999999999999999999999997
Q ss_pred ----------cCCCCCCCcccCcchhhh---------------------------------c------------------
Q 046093 118 ----------TFQGPVGGETLSLPKMVD---------------------------------V------------------ 136 (474)
Q Consensus 118 ----------~~~~t~eEd~lil~~~~~---------------------------------~------------------ 136 (474)
+..|+.+||-+++..+.. +
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 678887777555554433 1
Q ss_pred ---CC----chHHhhccCCCCCchhhhcchhhhhhh
Q 046093 137 ---AS----ASAAIDKRKAGKTSRCATKKNKSYIIN 165 (474)
Q Consensus 137 ---G~----~Ws~IakrlpGRTdn~iknrw~s~~~~ 165 (474)
|+ .|..|++.+|+||++++++||+.+++.
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 22 799999999999999999999887654
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=1.9e-15 Score=121.40 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=56.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhcccccc
Q 046093 61 LRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSKKIHT 118 (474)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~ 118 (474)
++|.+++++||+|||++|+++|.+||.+|..||++|++||++|||+||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999887
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=2.8e-15 Score=119.45 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=56.6
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhccccccCCC
Q 046093 61 LRTDLRRGNITTEEEETIIKLHASLG-NRWSVIASHLP--GRTDNELKNYWNTHLSKKIHTFQG 121 (474)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lp--gRT~~qcR~RW~~~Lrp~i~~~~~ 121 (474)
..+..++++||+|||++|+++|.+|| ++|..||+.|+ +||+.|||+||+++|+|.|.+...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45677899999999999999999999 69999999999 999999999999999999988654
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.58 E-value=2.8e-16 Score=138.65 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=77.5
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----CCcccccccccccccccC-----CCCCCC-CCChHHHHH
Q 046093 8 EKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKA----GLLRCGKSCRLRWVNYLR-----TDLRRG-NITTEEEET 77 (474)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~RW~n~L~-----p~lkkg-~WT~EED~~ 77 (474)
.++..++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.||++||+++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3578899999999999999999999987999999985 66 999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCChhH
Q 046093 78 IIKLHASLGNRWSV 91 (474)
Q Consensus 78 Ll~lV~~~G~~W~~ 91 (474)
|+.+...+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999998876
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=3.1e-16 Score=118.07 Aligned_cols=52 Identities=33% Similarity=0.703 Sum_probs=48.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCC
Q 046093 12 LKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTD 64 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~ 64 (474)
|++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997799999999998 99999999999999984
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=4.4e-16 Score=124.07 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=58.7
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC--CcccccccccccccccCCCCCCCCCC
Q 046093 8 EKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAG--LLRCGKSCRLRWVNYLRTDLRRGNIT 71 (474)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~RW~n~L~p~lkkg~WT 71 (474)
.++..++++||+|||++|+++|.+||.++|..||+.|+ + |++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 35788999999999999999999999889999999999 7 999999999999999999988754
No 29
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.55 E-value=1.7e-15 Score=133.87 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=72.6
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----CCccccccccccccccc-----CCCCCCCCCChHH-HHHH
Q 046093 9 KVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKA----GLLRCGKSCRLRWVNYL-----RTDLRRGNITTEE-EETI 78 (474)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EE-D~~L 78 (474)
+...++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456789999999999999999999988999999975 56 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 046093 79 IKLHASLGNR 88 (474)
Q Consensus 79 l~lV~~~G~~ 88 (474)
+++...+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999963
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1e-14 Score=113.37 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=50.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
.+.+++++||++||++|+++|.+|| .+|..||++|++||++|||+||+++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3578899999999999999999999 79999999999999999999999999865
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.1e-14 Score=115.00 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=48.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhccccc
Q 046093 65 LRRGNITTEEEETIIKLHASLG-NRWSVIASHLP--GRTDNELKNYWNTHLSKKIH 117 (474)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lp--gRT~~qcR~RW~~~Lrp~i~ 117 (474)
.+|++||+|||++|+++|.+|| ++|..||+.++ +||+.|||+||.+++++.|+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999 68999999865 99999999999999999874
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.9e-15 Score=119.43 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=49.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC--CcccccccccccccccCCCCC
Q 046093 10 VGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAG--LLRCGKSCRLRWVNYLRTDLR 66 (474)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~RW~n~L~p~lk 66 (474)
...+|++||+|||++|+++|.+||.++|..||+.++ + ||+.||++||+++++|+++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 345789999999999999999999889999999865 6 9999999999999998864
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=3.1e-15 Score=116.28 Aligned_cols=56 Identities=16% Similarity=0.407 Sum_probs=52.2
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCC
Q 046093 9 KVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDL 65 (474)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~l 65 (474)
.+.+++++||+|||++|+++|.+||.++|..||++|++ ||+.||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence 36899999999999999999999998899999999998 999999999999997653
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=2e-14 Score=108.81 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=46.6
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhcc
Q 046093 66 RRGNITTEEEETIIKLHASLG-NRWSVIASHLP--GRTDNELKNYWNTHLSK 114 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lp--gRT~~qcR~RW~~~Lrp 114 (474)
++++||+|||++|+++|.+|| ++|..||+.|+ +||+.|||+||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 69999999999 99999999999999874
No 35
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-15 Score=120.04 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=55.2
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCC
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGN 69 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~ 69 (474)
+++|.+++++||+|||++|+++|+.|| .+|..||+ +++ ||+.||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 578999999999999999999999999 59999999 777 9999999999999998877653
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=115.63 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhC------CChhHHhhhCCCCCHHHHHHHHHHhhccccccCC
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLG------NRWSVIASHLPGRTDNELKNYWNTHLSKKIHTFQ 120 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G------~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~~~ 120 (474)
+|.+++++||+|||++|+++|.+|| .+|..||++|++||++|||+||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 6899999999999999999999999999887644
No 37
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.48 E-value=7.1e-15 Score=129.69 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHhhc-----cccccC-CCCCCCcccC
Q 046093 61 LRTDLRRGNITTEEEETIIKLHASLGN-RWSVIASH----LPGRTDNELKNYWNTHLS-----KKIHTF-QGPVGGETLS 129 (474)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~----lpgRT~~qcR~RW~~~Lr-----p~i~~~-~~t~eEd~li 129 (474)
+.+..++++||.|||+.|+++|++||. +|..|++. |++||+.+||+||+++++ |.++++ .++.+++..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456678999999999999999999995 99999998 489999999999999999 999887 6666677889
Q ss_pred cchhhhcCCchHH
Q 046093 130 LPKMVDVASASAA 142 (474)
Q Consensus 130 l~~~~~~G~~Ws~ 142 (474)
+.++..+|++|++
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.7e-15 Score=117.89 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=56.1
Q ss_pred cCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccccccCCcccccccccccccccCCCCCCCC
Q 046093 9 KVGLKKGKWTAKEDEILTKYIQANGI-----ESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGN 69 (474)
Q Consensus 9 kp~lkKg~WT~EEDe~L~~lV~kyG~-----~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~ 69 (474)
+|.+++++||+|||++|+++|.+||. .+|..||++|++ ||+.||+.||.++|.+.+++|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999996 789999999998 9999999999999998877764
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=8.6e-14 Score=107.54 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=46.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHhh
Q 046093 63 TDLRRGNITTEEEETIIKLHASLG-NRWSVIASHLP-GRTDNELKNYWNTHL 112 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lp-gRT~~qcR~RW~~~L 112 (474)
..+.+++||++||++|+++|++|| ++|..||++|+ +||++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999 89999999999 999999999999875
No 40
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=1.3e-14 Score=109.88 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=46.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccC--CcccccccccccccccC
Q 046093 13 KKGKWTAKEDEILTKYIQANGIESWRSLPKKAG--LLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~RW~n~L~ 62 (474)
+|++||+|||++|+++|.+||.++|..||+.|+ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 7 999999999999875
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=2.3e-14 Score=110.77 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=47.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC-Cccccccccccccccc
Q 046093 10 VGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAG-LLRCGKSCRLRWVNYL 61 (474)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCr~RW~n~L 61 (474)
..+.+++||+|||++|+++|++||.++|..||++|+ + ||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 457789999999999999999999999999999999 6 99999999999875
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=3.2e-14 Score=114.28 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=54.7
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCC
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRR 67 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkk 67 (474)
+..|.+++++||+|||++|+++|..|| .+|..||++|++ ||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999 599999999998 99999999999999876665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.40 E-value=6e-14 Score=113.68 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred CCCcccccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCC
Q 046093 2 GRTPCCEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRR 67 (474)
Q Consensus 2 gR~~~~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkk 67 (474)
+|+...++|.++|++||+|||++|+++|.+|| .+|..||+.| + ||+.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 57788999999999999999999999999999 6699999999 7 999999999985 5444443
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.39 E-value=1.7e-13 Score=120.99 Aligned_cols=79 Identities=20% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC-CChhHHhhhC----CCCCHHHHHHHHHHhh-----ccccccCCCCCCC-cccCcc
Q 046093 63 TDLRRGNITTEEEETIIKLHASLG-NRWSVIASHL----PGRTDNELKNYWNTHL-----SKKIHTFQGPVGG-ETLSLP 131 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~~W~~IAk~l----pgRT~~qcR~RW~~~L-----rp~i~~~~~t~eE-d~lil~ 131 (474)
...++++||.|||+.|+++|++|| ++|..|++.+ ++||+.|||+||.+++ .|.++++.++++| +..++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 345788999999999999999999 5999999963 8999999999999999 7999998888887 688889
Q ss_pred hhhhcCCchH
Q 046093 132 KMVDVASASA 141 (474)
Q Consensus 132 ~~~~~G~~Ws 141 (474)
+|..+|++-+
T Consensus 107 ~h~~~g~~~~ 116 (122)
T 2roh_A 107 AQAYWSVDSS 116 (122)
T ss_dssp HHHHHHSSCS
T ss_pred HHHHHhhHHh
Confidence 9999998743
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.03 E-value=8.1e-14 Score=116.61 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 60 YLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
.+.|.+++++||++||.+|+++|.+||.+|..||++|+|||++|||+||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998875
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=4.2e-12 Score=102.83 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhc
Q 046093 63 TDLRRGNITTEEEETIIKLHASLG----NRWSVIASHLPGRTDNELKNYWNTHLS 113 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G----~~W~~IAk~lpgRT~~qcR~RW~~~Lr 113 (474)
+.+.+++||.+||.+|++++.+|| .+|.+||++|||||.+|||+||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 566889999999999999999999 579999999999999999999998765
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.26 E-value=2.3e-12 Score=106.77 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCCccccccccccccccc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 046093 15 GKWTAKEDEILTKYIQANGIESWRSLPKK----AGLLRCGKSCRLRWVNYL-----RTDLRRG-NITTEEEETIIKLHAS 84 (474)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~----l~~~Rt~kQCr~RW~n~L-----~p~lkkg-~WT~EED~~Ll~lV~~ 84 (474)
++||+|||+.|+++|++||.++|..|++. +++ ||+.||++||+++| .|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999996 777 99999999999988 6777666 7888888888887754
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.24 E-value=4.9e-12 Score=103.78 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHh
Q 046093 64 DLRRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTH 111 (474)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~ 111 (474)
...+++||++||++|+++|++||.+|..||++|++||+.|||.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999987
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=3.2e-12 Score=110.29 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=66.4
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----CCccccccccccccccc-----CCCCCCCCCChHHHHH-
Q 046093 8 EKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKA----GLLRCGKSCRLRWVNYL-----RTDLRRGNITTEEEET- 77 (474)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EED~~- 77 (474)
.++..++++||+|||+.|+.+|++||.++|..|++.+ ++ ||+.||++||++++ +|.+++|.=+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4578899999999999999999999988999999976 56 99999999999998 6899999877777655
Q ss_pred HHHHHHHhC
Q 046093 78 IIKLHASLG 86 (474)
Q Consensus 78 Ll~lV~~~G 86 (474)
++++...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=105.65 Aligned_cols=53 Identities=19% Similarity=0.438 Sum_probs=49.5
Q ss_pred ccccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc
Q 046093 6 CCEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNY 60 (474)
Q Consensus 6 ~~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~ 60 (474)
.+.++...+++||+|||++|+++|++|| .+|..||++|++ ||+.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 4566777899999999999999999999 999999999998 9999999999998
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.22 E-value=7.4e-12 Score=107.97 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCC-ChhHHhhhC----CCCCHHHHHHHHHHhhc-----cccccCCCCCCC
Q 046093 63 TDLRRGNITTEEEETIIKLHASLGN-RWSVIASHL----PGRTDNELKNYWNTHLS-----KKIHTFQGPVGG 125 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G~-~W~~IAk~l----pgRT~~qcR~RW~~~Lr-----p~i~~~~~t~eE 125 (474)
+..++++||.|||+.|+++|++||. +|..|++.+ ++||+.+||+||.++++ |.++++.-.+.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~ 81 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQE 81 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHH
Confidence 4567899999999999999999995 999999965 89999999999999994 777665544443
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.80 E-value=2.3e-12 Score=107.75 Aligned_cols=54 Identities=20% Similarity=0.434 Sum_probs=50.6
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccC
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
...|.+++|+||+|||++|+++|..|| .+|..||+.|++ ||..||+.||.++|.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~g-Rt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGS-KTVSQCKNFYFNYKK 62 (89)
Confidence 456899999999999999999999999 589999999998 999999999999875
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.17 E-value=3.3e-11 Score=99.84 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHhhc-----cccccC
Q 046093 68 GNITTEEEETIIKLHASLGN-RWSVIASH----LPGRTDNELKNYWNTHLS-----KKIHTF 119 (474)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~-~W~~IAk~----lpgRT~~qcR~RW~~~Lr-----p~i~~~ 119 (474)
.+||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++ |.++++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~ 62 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC
Confidence 48999999999999999995 99999996 899999999999999994 555543
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=5.4e-12 Score=102.17 Aligned_cols=56 Identities=14% Similarity=0.325 Sum_probs=50.5
Q ss_pred ccccCCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 046093 6 CCEKVGLKKGKWTAKEDEILTKYIQANGI---ESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 6 ~~~kp~lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
.-.++...+++||++||++|+++|.+||. .+|..||++||+ ||..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34678889999999999999999999993 579999999998 999999999998764
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.98 E-value=3.8e-10 Score=95.34 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=45.1
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 66 RRGNITTEEEETIIKLHASLG----NRWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G----~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
.+++||.+||++|++++.+|| .+|..||++|||||.+|||+||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999997 56999999999999999999999987553
No 56
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.97 E-value=7.6e-10 Score=86.78 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=46.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCChhHHh---hhCCCCCHHHHHHHHHHhhccc
Q 046093 66 RRGNITTEEEETIIKLHASLGNRWSVIA---SHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~~W~~IA---k~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
++.+||+|||+.|++.|++||.+|..|+ ..+++||.-++++||+++.+..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 6789999999999999999999999999 5779999999999999987654
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.79 E-value=7.4e-10 Score=93.55 Aligned_cols=48 Identities=13% Similarity=0.340 Sum_probs=43.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccCCccccccccccccccc
Q 046093 13 KKGKWTAKEDEILTKYIQANG---IESWRSLPKKAGLLRCGKSCRLRWVNYL 61 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~l~~~Rt~kQCr~RW~n~L 61 (474)
.+++||+|||++|.+++.+|+ ..+|..||+.|++ ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 467999999999999999997 3579999999998 99999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.6e-08 Score=78.76 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=44.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhc
Q 046093 66 RRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLS 113 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lr 113 (474)
...+||++|+.++++++.+||.+|..||..||+||..||+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 357999999999999999999999999999999999999999986543
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.5e-08 Score=78.91 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=46.1
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNY 60 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~ 60 (474)
.++.....++||+||++++.+++.+|| ++|..||..|++ |+..||+++|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 344555778999999999999999999 799999999998 9999999998754
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.54 E-value=1.8e-08 Score=79.06 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccc---cccCCcccccccccccccccC
Q 046093 12 LKKGKWTAKEDEILTKYIQANGIESWRSLP---KKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA---k~l~~~Rt~kQCr~RW~n~L~ 62 (474)
-.+++||+|||+.|+++|++||. +|..|+ ..+++ ||....++||+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 36889999999999999999995 999999 46666 999999999998754
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=7.4e-08 Score=77.67 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=44.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhcc
Q 046093 64 DLRRGNITTEEEETIIKLHASLG----NRWSVIASHLPGRTDNELKNYWNTHLSK 114 (474)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G----~~W~~IAk~lpgRT~~qcR~RW~~~Lrp 114 (474)
..+.++||.+||++|.+++.+|+ .+|..||.++ |||.++|+.||..++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 4699999998 99999999999988655
No 62
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.53 E-value=7.7e-08 Score=81.21 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=58.7
Q ss_pred ccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhC-----CCCCHHHHHHHHHHhhccccccC
Q 046093 50 GKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHL-----PGRTDNELKNYWNTHLSKKIHTF 119 (474)
Q Consensus 50 ~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~l-----pgRT~~qcR~RW~~~Lrp~i~~~ 119 (474)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.+..+...
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45578999999976 89999999999999999999999999999 58999999999999887776543
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.37 E-value=4.1e-07 Score=87.72 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=45.7
Q ss_pred CCCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhcc
Q 046093 66 RRGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSK 114 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp 114 (474)
...+||.+|+.++++++.+||.+|..||+.+++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999987754
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=1.1e-07 Score=76.67 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 046093 10 VGLKKGKWTAKEDEILTKYIQANGI---ESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 10 p~lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
...+++.||.|||++|.+++.+|+. ..|..||+.+ + ||..||+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 3456789999999999999999973 5799999998 5 999999999987654
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.28 E-value=7.6e-07 Score=69.08 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCC-hhHHhh-hCCCCCHHHHHHHHHHhhc
Q 046093 67 RGNITTEEEETIIKLHASL--------GNR-WSVIAS-HLPGRTDNELKNYWNTHLS 113 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~--------G~~-W~~IAk-~lpgRT~~qcR~RW~~~Lr 113 (474)
+.+||+|||++|+++|.+| |+. |..+++ .+|.+|-.+||+||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5799999999999999999 433 999999 7899999999999999875
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.28 E-value=5.5e-07 Score=95.34 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhh
Q 046093 68 GNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHL 112 (474)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~L 112 (474)
.+||.+|-.++++++.+||.+|..||+.++.||..|||.+|.++-
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999998643
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.19 E-value=2.2e-06 Score=69.28 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 67 RGNITTEEEETIIKLHASLGN----RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~----~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
...||.+|+++|.+++..|+. +|..||.++++||..+|+.||..+++-.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999983 5999999999999999999999875543
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.13 E-value=5.5e-07 Score=72.87 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 046093 14 KGKWTAKEDEILTKYIQANGI---ESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
...||++|+++|.+++..|+. .+|..||..|++ ||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999975 479999999999 999999999988754
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.09 E-value=6.6e-07 Score=69.44 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCCcccccccccccccccC
Q 046093 14 KGKWTAKEDEILTKYIQAN--------GIESWRSLPK-KAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IAk-~l~~~Rt~kQCr~RW~n~L~ 62 (474)
|.+||+|||++|++.|..| |..-|+.+|+ .++. +|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5789999999999999999 4345999999 7887 999999999999874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.05 E-value=1.3e-06 Score=84.26 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=45.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccC
Q 046093 12 LKKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
....+||.||++++++++.+|| ++|..||+.|++ ||..||+.+|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4567899999999999999999 899999999999 999999999988753
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=8.8e-05 Score=57.94 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 046093 62 RTDLRRGNITTEEEETIIKLHASLGNRWSVIAS-HLPGRTDNELKNYWNT 110 (474)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk-~lpgRT~~qcR~RW~~ 110 (474)
.|.++..+||++|-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 366778899999999999999999999999999 4899999999988864
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.60 E-value=1.2e-05 Score=64.99 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccc
Q 046093 14 KGKWTAKEDEILTKYIQANGI---ESWRSLPKKAGLLRCGKSCRLRWV 58 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~RW~ 58 (474)
...||.+|+++|.+++..|+. ..|.+||+.||+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 457999999999999999975 379999999998 99999999985
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.48 E-value=2.5e-05 Score=63.06 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHH
Q 046093 67 RGNITTEEEETIIKLHASLGN----RWSVIASHLPGRTDNELKNYWN 109 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~----~W~~IAk~lpgRT~~qcR~RW~ 109 (474)
..+||.+|+++|.+++.+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 6999999999999999999874
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=4.5e-05 Score=59.60 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=45.0
Q ss_pred ccCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCCccccccccccccc
Q 046093 8 EKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPK-KAGLLRCGKSCRLRWVN 59 (474)
Q Consensus 8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~RW~n 59 (474)
-.|.++...||+||-++..+++.+|| ++|..|++ .|++ |+..||.+-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 46888999999999999999999999 79999999 5888 999999887654
No 75
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.46 E-value=0.00012 Score=61.27 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHhhcc
Q 046093 69 NITTEEEETIIKLHASLGN---RWSVIASHLPGRTDNELKNYWNTHLSK 114 (474)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~---~W~~IAk~lpgRT~~qcR~RW~~~Lrp 114 (474)
-||.+||..||...++-|. .|..||+.|.+|+.+|+++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999995 699999999999999999999987653
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.36 E-value=0.00031 Score=70.62 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccc-------ccccc----------------------------
Q 046093 15 GKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCR-------LRWVN---------------------------- 59 (474)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~RW~n---------------------------- 59 (474)
+.||..+...++.++.+||..+|..||..|++ ++....+ +||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999899999999987 7765543 12200
Q ss_pred ---------------ccCCCCCCCCCChHHHHHHHHHHHHhCC----ChhHHhh------------hCCCCCHHHHHHHH
Q 046093 60 ---------------YLRTDLRRGNITTEEEETIIKLHASLGN----RWSVIAS------------HLPGRTDNELKNYW 108 (474)
Q Consensus 60 ---------------~L~p~lkkg~WT~EED~~Ll~lV~~~G~----~W~~IAk------------~lpgRT~~qcR~RW 108 (474)
+..+.-+...||.+||..|+-++.+||- .|..|.. .+..||+.++..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0012224458999999999999999994 4999962 34679999999999
Q ss_pred HHhhcc
Q 046093 109 NTHLSK 114 (474)
Q Consensus 109 ~~~Lrp 114 (474)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.36 E-value=4e-05 Score=60.97 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHhhc
Q 046093 69 NITTEEEETIIKLHASLGN---RWSVIASHLPGRTDNELKNYWNTHLS 113 (474)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~---~W~~IAk~lpgRT~~qcR~RW~~~Lr 113 (474)
-||.+||..|+...++-|. .|..||+.| +|+++|+.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999998664
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.15 E-value=0.00049 Score=57.97 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=51.3
Q ss_pred cccccccCCCCCCCCCChHHHHHHHHHHHHhCCChhHHhhhCC-----CCCHHHHHHHHHHhhccccccC
Q 046093 55 LRWVNYLRTDLRRGNITTEEEETIIKLHASLGNRWSVIASHLP-----GRTDNELKNYWNTHLSKKIHTF 119 (474)
Q Consensus 55 ~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~~W~~IAk~lp-----gRT~~qcR~RW~~~Lrp~i~~~ 119 (474)
+.|..+|. ...||.||-..|++|+++|+-+|..|+.... .||-.++|.||..+.++.+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555664 3689999999999999999999999999873 7999999999999888776543
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.01 E-value=0.00022 Score=75.70 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc
Q 046093 13 KKGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNY 60 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~ 60 (474)
...+||.+|-+++++++.+|| ++|..||.+|++ |+..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 467999999999999999999 799999999999 9999999988764
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.00 E-value=0.001 Score=55.88 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHH
Q 046093 67 RGNITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNT 110 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~ 110 (474)
...||++|-.+..+++..||.+|..||..|++||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998764
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.96 E-value=0.0013 Score=52.36 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 046093 67 RGNITTEEEETIIKLHASLGNRWSVIAS-HLPGRTDNELKNYWNT 110 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~~W~~IAk-~lpgRT~~qcR~RW~~ 110 (474)
..+||++|-.+..+++.+||.+|..|++ .|++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999998874
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.96 E-value=0.00015 Score=61.13 Aligned_cols=59 Identities=5% Similarity=-0.112 Sum_probs=53.4
Q ss_pred HHHHHHHhhccccccCCCCCCCcccCcchhhhcCCchHHhhccC-----CCCCchhhhcchhhhhhhc
Q 046093 104 LKNYWNTHLSKKIHTFQGPVGGETLSLPKMVDVASASAAIDKRK-----AGKTSRCATKKNKSYIINK 166 (474)
Q Consensus 104 cR~RW~~~Lrp~i~~~~~t~eEd~lil~~~~~~G~~Ws~Iakrl-----pGRTdn~iknrw~s~~~~k 166 (474)
+.++|.++|.+ ..||.+|+..++.+...++.+|..|+.++ ++||...+|+|++.+.++.
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999987 79999999999999999999999999999 5899999999998875443
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.65 E-value=0.00089 Score=54.75 Aligned_cols=50 Identities=18% Similarity=0.413 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHHHhC-------C---ChhHHhhhCC----CCCHHHHHHHHHHhhccc
Q 046093 66 RRGNITTEEEETIIKLHASLG-------N---RWSVIASHLP----GRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G-------~---~W~~IAk~lp----gRT~~qcR~RW~~~Lrp~ 115 (474)
+...||.+|-..||++...+. . .|..||..|. .||+.||+.+|.++.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999987532 1 3999999873 699999999999977653
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.62 E-value=0.00057 Score=57.51 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCccccccccccccc
Q 046093 14 KGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVN 59 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n 59 (474)
...||+||.++..+++..|| ++|..||+.|++ |+..||.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 46799999999999999999 899999999998 999999987653
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.50 E-value=0.00084 Score=53.48 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCCccccccccccccc
Q 046093 13 KKGKWTAKEDEILTKYIQANGIESWRSLPK-KAGLLRCGKSCRLRWVN 59 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~RW~n 59 (474)
....||+||-++..+++.+|| ++|..|++ .|++ |+..||.+-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 456899999999999999999 79999999 5888 999999987653
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.14 E-value=0.00054 Score=56.05 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=39.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---Cccccccccccccccc
Q 046093 13 KKGKWTAKEDEILTKYIQANGI---------ESWRSLPKKAG---LLRCGKSCRLRWVNYL 61 (474)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~---------~nW~~IAk~l~---~~Rt~kQCr~RW~n~L 61 (474)
+...||.+|-..|+.++..... ..|..||..|. -.|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999975311 25999999975 2399999999998864
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.09 E-value=0.0037 Score=52.42 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCCcccccccccccccc
Q 046093 15 GKWTAKEDEILTKYIQANGI--ESWRSLPKKAGLLRCGKSCRLRWVNY 60 (474)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~RW~n~ 60 (474)
-.||.|||..|+.+.++.|. ..|..||+.|++ |++.|..+||+.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 45999999999999999875 479999999988 9999999999763
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.07 E-value=0.0054 Score=57.48 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=26.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhC--CCCccccccc
Q 046093 12 LKKGKWTAKEDEILTKYIQANG--IESWRSLPKK 43 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG--~~nW~~IAk~ 43 (474)
-....||..|-..|++++.+|| ...|..|+..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d 38 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD 38 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 3456899999999999999999 4689999865
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.97 E-value=0.0012 Score=52.66 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=41.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCccccccccCCcccccccccccccccC
Q 046093 14 KGKWTAKEDEILTKYIQANGI--ESWRSLPKKAGLLRCGKSCRLRWVNYLR 62 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~RW~n~L~ 62 (474)
--.||.|||..|+..+++-|. .-|..||+.+ + |++.|...||...+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 346999999999999999885 4799999999 5 999999999988653
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.08 E-value=0.13 Score=53.04 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccc----------------------------------------
Q 046093 15 GKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCR---------------------------------------- 54 (474)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr---------------------------------------- 54 (474)
+.||.-+=..++.+..+||..+-..||..|.++++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999888999999997225554333
Q ss_pred --------cccccc-c-CCCC--CCCCCChHHHHHHHHHHHHhC----CChhHHhhh------------CCCCCHHHHHH
Q 046093 55 --------LRWVNY-L-RTDL--RRGNITTEEEETIIKLHASLG----NRWSVIASH------------LPGRTDNELKN 106 (474)
Q Consensus 55 --------~RW~n~-L-~p~l--kkg~WT~EED~~Ll~lV~~~G----~~W~~IAk~------------lpgRT~~qcR~ 106 (474)
.-|.++ + .+.. ++..||.+||..||-++.+|| +.|..|-.. +..||+..+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 111110 0 1111 345799999999999999999 359999443 35699999999
Q ss_pred HHHHhhccccc
Q 046093 107 YWNTHLSKKIH 117 (474)
Q Consensus 107 RW~~~Lrp~i~ 117 (474)
|...+|+-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998865443
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.95 E-value=0.032 Score=46.99 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=41.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccC----Cccccccccccccccc
Q 046093 12 LKKGKWTAKEDEILTKYIQANGIESWRSLPKKAG----LLRCGKSCRLRWVNYL 61 (474)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCr~RW~n~L 61 (474)
|+...||.||...|..|+++|. -.|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 78999999875 1389999999988754
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.14 E-value=0.22 Score=46.37 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=30.1
Q ss_pred cccCCCccCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 046093 7 CEKVGLKKGKWTAKEDEILTKYIQANGIESWRSLPKK 43 (474)
Q Consensus 7 ~~kp~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~ 43 (474)
+.++.-....||.+||..|+..|.+||.++|..|-.-
T Consensus 127 ~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 127 HTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3344444567999999999999999999999998653
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.01 E-value=0.7 Score=36.26 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=40.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCC---hhHHhhhC--CCCCHHHHHHHHHHhh
Q 046093 65 LRRGNITTEEEETIIKLHASLGNR---WSVIASHL--PGRTDNELKNYWNTHL 112 (474)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~~---W~~IAk~l--pgRT~~qcR~RW~~~L 112 (474)
..+-.||+|.-++.+++|.++|.. +..|.+.| +|.|..+|+.+.+.|-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999943 88998876 7899999999877653
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.01 E-value=0.6 Score=46.11 Aligned_cols=28 Identities=32% Similarity=0.569 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 046093 15 GKWTAKEDEILTKYIQANGIESWRSLPK 42 (474)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk 42 (474)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999964
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=82.53 E-value=1.7 Score=43.57 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHH
Q 046093 67 RGNITTEEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWN 109 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~ 109 (474)
-+.||..+....+.+..+|| ..|..||..|+++|...|+..+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34799999999999999999 57999999999999999976544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.19 E-value=1.3 Score=43.75 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHHHHhC-CChhHHhh
Q 046093 69 NITTEEEETIIKLHASLG-NRWSVIAS 94 (474)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G-~~W~~IAk 94 (474)
.|+.+||..|+..|.+|| +.|.+|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 99999965
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=66.26 E-value=2.7 Score=32.86 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CccccccccCC-cccccccccc
Q 046093 11 GLKKGKWTAKEDEILTKYIQANGIE--SWRSLPKKAGL-LRCGKSCRLR 56 (474)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~kyG~~--nW~~IAk~l~~-~Rt~kQCr~R 56 (474)
...+-.||+|..+....+|...|.. .++.|.+.|+- +.|..++.-+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH 52 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 52 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH
Confidence 4467789999999999999999932 26788877753 1566666543
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.86 E-value=8.6 Score=32.78 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=31.8
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..||..|.--.+..+|..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 38888888885 5999999984434889999999998774
No 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=53.90 E-value=15 Score=31.33 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCCCC----HHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPGRT----DNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpgRT----~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..|+..|.--. +.++|..|..+|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 48888888885 5999999983222 568899999888764
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.82 E-value=18 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCCC-C---HHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPGR-T---DNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpgR-T---~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..||+.|.-- + +.++|..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47788888885 699999999332 2 578899999888763
No 101
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=48.00 E-value=20 Score=30.82 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCC-CC---HHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPG-RT---DNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpg-RT---~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.++|+ .|..||..|.- .+ +.++|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 48888888885 69999999832 22 468899999998875
No 102
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.78 E-value=21 Score=30.69 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCCC-C---HHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPGR-T---DNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpgR-T---~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..|++.|.-. + +.++|..|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 48888888885 599999998322 1 468899999888774
No 103
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.82 E-value=23 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCC--------ChhHHhhhC--CCC---CHHHHHHHHHHhhccc
Q 046093 76 ETIIKLHASLGN--------RWSVIASHL--PGR---TDNELKNYWNTHLSKK 115 (474)
Q Consensus 76 ~~Ll~lV~~~G~--------~W~~IAk~l--pgR---T~~qcR~RW~~~Lrp~ 115 (474)
-+|..+|.+.|+ .|..||..| +.. .+.++|..|..+|.+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 348888888885 699999998 222 2578999999998875
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.22 E-value=27 Score=30.86 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHHHHHHHhCC--------ChhHHhhhC--CCC---CHHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHL--PGR---TDNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~l--pgR---T~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..|+..| +.. .+.++|..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 48888888885 599999998 222 2578999999999885
No 105
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=42.97 E-value=25 Score=30.48 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=49.7
Q ss_pred CccCCCCHHHH--HHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCChHHHHHHHHHHHHhCC--
Q 046093 12 LKKGKWTAKED--EILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDLRRGNITTEEEETIIKLHASLGN-- 87 (474)
Q Consensus 12 lkKg~WT~EED--e~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~~G~-- 87 (474)
.-+.+|.+.+. +.|.+..+..| .....++. +++ |. |+ =-+|..+|.+.|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~-i~g-k~-----------lD------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQG-ITMDELPL-IGG-CE-----------LD------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTT-CCCSSCCE-ETT-EE-----------CC------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcC-CCCCCCCc-CCC-Ee-----------cc------------HHHHHHHHHHcCcHH
Confidence 34567887775 45666667777 33444432 222 11 11 1248888888885
Q ss_pred ------ChhHHhhhC--CCCC---HHHHHHHHHHhhccc
Q 046093 88 ------RWSVIASHL--PGRT---DNELKNYWNTHLSKK 115 (474)
Q Consensus 88 ------~W~~IAk~l--pgRT---~~qcR~RW~~~Lrp~ 115 (474)
.|..||..| |.-+ ...+|..|..+|-+-
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 599999998 3222 468899999988774
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.20 E-value=13 Score=32.24 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.9
Q ss_pred HHHHHHHhCC--------ChhHHhhhCCCCCHHHHHHHHHHhhccc
Q 046093 78 IIKLHASLGN--------RWSVIASHLPGRTDNELKNYWNTHLSKK 115 (474)
Q Consensus 78 Ll~lV~~~G~--------~W~~IAk~lpgRT~~qcR~RW~~~Lrp~ 115 (474)
|..+|.+.|+ .|..|+..|.--.+..+|..|..+|-|-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 7788887775 4999999884334899999999999885
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=39.20 E-value=16 Score=29.84 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCC-C---CHHHHHHHHHHhhcc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLPG-R---TDNELKNYWNTHLSK 114 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lpg-R---T~~qcR~RW~~~Lrp 114 (474)
+|..+|.+.|+ .|.+|+..|.- . .+.++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 37888888774 59999998822 1 256889989888765
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=35.03 E-value=52 Score=33.82 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHH---------------------------------Hh
Q 046093 67 RGNITTEEEETIIKLHASLG-NRWSVIASHLP-GRTDNELKNYWN---------------------------------TH 111 (474)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~~W~~IAk~lp-gRT~~qcR~RW~---------------------------------~~ 111 (474)
-+.||.-+=..++.+..+|| ..-..||..|. ++|...|+.... .+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999 56999999996 899988884322 44
Q ss_pred hccccc-------------------cCCCCCCCcccCcchhhhcC----CchHHhhcc------------CCCCCchhhh
Q 046093 112 LSKKIH-------------------TFQGPVGGETLSLPKMVDVA----SASAAIDKR------------KAGKTSRCAT 156 (474)
Q Consensus 112 Lrp~i~-------------------~~~~t~eEd~lil~~~~~~G----~~Ws~Iakr------------lpGRTdn~ik 156 (474)
|+.+|. ...|+.+||..++-....+| ..|..|-.- +..||...+.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 454432 22345666655555555555 458777322 3478999999
Q ss_pred cchhhhhh
Q 046093 157 KKNKSYII 164 (474)
Q Consensus 157 nrw~s~~~ 164 (474)
+|.++++.
T Consensus 283 rRc~tLi~ 290 (374)
T 2y9y_A 283 RRGNTLLQ 290 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888753
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=34.04 E-value=11 Score=32.59 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCCcccc----cccccccccccCCCCCCCCCChHHHHHHHHHHHH
Q 046093 24 ILTKYIQANGI-------ESWRSLPKKAGLLRCG----KSCRLRWVNYLRTDLRRGNITTEEEETIIKLHAS 84 (474)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt~----kQCr~RW~n~L~p~lkkg~WT~EED~~Ll~lV~~ 84 (474)
+|..+|.+.|. +.|.+||..|+-..+. ...+..|.++|.|- ...+++|-.+|.+-|..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHHH
Confidence 57788888774 4799999999753322 35577788888652 23788999988877653
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.84 E-value=8.8 Score=32.73 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCccccccccCCcccccccccccccccCC
Q 046093 24 ILTKYIQANGI-------ESWRSLPKKAGLLRCGKSCRLRWVNYLRT 63 (474)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p 63 (474)
.|..+|.+.|. +.|..||..|+. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57777777763 479999999987 4467777778777653
No 111
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.98 E-value=24 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCC--CC---CHHHHHHHHHHhhccc
Q 046093 77 TIIKLHASLGN--------RWSVIASHLP--GR---TDNELKNYWNTHLSKK 115 (474)
Q Consensus 77 ~Ll~lV~~~G~--------~W~~IAk~lp--gR---T~~qcR~RW~~~Lrp~ 115 (474)
+|..+|.+.|+ .|..||..|. .. .+.++|..|..+|.+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888874 5999999882 21 2468999999988774
No 112
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=29.76 E-value=12 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCC-------CCCCCChHHHHHHH
Q 046093 22 DEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNYLRTDL-------RRGNITTEEEETII 79 (474)
Q Consensus 22 De~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~L~p~l-------kkg~WT~EED~~Ll 79 (474)
+.+|.++|..|| |..++..+.- .|.. .+|.+ +|.||-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I-----~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNI-----NCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTS-----SSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhccc-----ccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 9999987764 3443 25654 47899888777665
No 113
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=28.96 E-value=23 Score=32.52 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 046093 10 VGLKKGKWTAKEDEILT--------KYIQANGIESWRSLP 41 (474)
Q Consensus 10 p~lkKg~WT~EEDe~L~--------~lV~kyG~~nW~~IA 41 (474)
|.=.+|-||+|.|+.|. ++++||| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 44568999999999875 5788888 44443
No 114
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.52 E-value=2.8e+02 Score=23.48 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=56.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc------cCCCCC----CCCCChHHHHHHHHHHH
Q 046093 14 KGKWTAKEDEILTKYIQANGIESWRSLPKKAGLLRCGKSCRLRWVNY------LRTDLR----RGNITTEEEETIIKLHA 83 (474)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~RW~n~------L~p~lk----kg~WT~EED~~Ll~lV~ 83 (474)
..+.|.++-..++.++. .| ..-.+||+.++- +... ..||.+. +.+..+ +...+.+....|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689998888888884 46 567899999873 3333 3334432 222211 23578888888888887
Q ss_pred HhC-CChhHHhhhC---------CCCCHHHHHHHHHHhhc
Q 046093 84 SLG-NRWSVIASHL---------PGRTDNELKNYWNTHLS 113 (474)
Q Consensus 84 ~~G-~~W~~IAk~l---------pgRT~~qcR~RW~~~Lr 113 (474)
... -.-..|+..+ ..-+...++.....++.
T Consensus 98 ~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 98 QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 654 2334555544 13466666655554444
No 115
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.11 E-value=57 Score=28.52 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhcccccc
Q 046093 73 EEEETIIKLHASLG-NRWSVIASHLPGRTDNELKNYWNTHLSKKIHT 118 (474)
Q Consensus 73 EED~~Ll~lV~~~G-~~W~~IAk~lpgRT~~qcR~RW~~~Lrp~i~~ 118 (474)
+-|.+|+++.++.| -.+..||+.+ |-+...|+.|+..+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45888999888887 5799999999 889999999999988887654
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=25.08 E-value=18 Score=30.11 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCCcc----cccccccccccccCC
Q 046093 24 ILTKYIQANGI-------ESWRSLPKKAGLLR----CGKSCRLRWVNYLRT 63 (474)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~R----t~kQCr~RW~n~L~p 63 (474)
.|..+|.+.|. +.|.+||..|+... .+.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777653 47999999997522 234567777777764
No 117
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.20 E-value=85 Score=22.64 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhcc
Q 046093 70 ITTEEEETIIKLHASLGNRWSVIASHLPGRTDNELKNYWNTHLSK 114 (474)
Q Consensus 70 WT~EED~~Ll~lV~~~G~~W~~IAk~lpgRT~~qcR~RW~~~Lrp 114 (474)
.++ .+..++.+.-..|-.+.+||..+ |-+...++.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44445555556678899999999 77888888877655443
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=22.09 E-value=16 Score=31.09 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCCccc---ccccccccccccC
Q 046093 24 ILTKYIQANGI-------ESWRSLPKKAGLLRC---GKSCRLRWVNYLR 62 (474)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCr~RW~n~L~ 62 (474)
+|..+|.+.|. +.|.+||..|+-..+ +.+.+..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57778877763 479999999976221 2345566666654
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.88 E-value=66 Score=29.54 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=19.1
Q ss_pred CCCCCCCCChHHHHHHH--------HHHHHhC
Q 046093 63 TDLRRGNITTEEEETII--------KLHASLG 86 (474)
Q Consensus 63 p~lkkg~WT~EED~~Ll--------~lV~~~G 86 (474)
|.-..|-||+++|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 45578999999999887 6667776
No 120
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=20.42 E-value=18 Score=31.23 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCCccc----ccccccccccccCC
Q 046093 24 ILTKYIQANGI-------ESWRSLPKKAGLLRC----GKSCRLRWVNYLRT 63 (474)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt----~kQCr~RW~n~L~p 63 (474)
+|..+|.+.|. +.|.+||..|+-..+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777764 479999999975322 23456667777654
Done!