BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046094
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 1 MMEYIGATGIP-VKFDSMPIKDGI-DFHFILSFAIDVDPSGNYQ--NGKFSPYW-AETLT 55
+EYIG VKF +PI I F F+LSFA+D S + NGKF+ +W + L
Sbjct: 3 FVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILG 62
Query: 56 PDSVAAVKARHPNVKXXXXXXXXXXXXKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDG 115
PD ++A+K+ HPNV+ + + + W+SNA +SL IIQ Y+LDG
Sbjct: 63 PDQISAIKSSHPNVRVAVSLGGASVGSNTVQ-FQAASVDSWVSNAVTSLTRIIQRYNLDG 121
Query: 116 IDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHV 175
IDIDYE F +N +FA CIG LIT LK VIS A+I+PF S Y+ L+ +Y +
Sbjct: 122 IDIDYEHF--QNTDKNTFAECIGRLITTLKKNGVISFASISPFPSVDEYYLALFNEYKNA 179
Query: 176 VDYVNYQFYT-DKVRSPRGYLEAFKLRVEQFGREKMVPSYEVN---GRGIQGQAFFDALR 231
++++NYQF D S +L + ++ ++ S+ G + FFDA
Sbjct: 180 INHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAAT 239
Query: 232 LLQANG 237
L+ G
Sbjct: 240 SLKNKG 245
>pdb|1NAR|A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms
Resolution
Length = 290
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 3 EYIGATGIPVKFDSMPIK----DGIDFHFILSFAIDVDPSGNYQNGKFSPYW-AETLTPD 57
EYIG P + + ++FH+IL FAI+ G F W E P+
Sbjct: 7 EYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPE 66
Query: 58 SVAAVKARHPNVKXXXXXXXXXXXXKVLHWYNPRNPQIWISNAFSSLKSIIQEYH----- 112
V +K RHP VK ++P +W+SNA SLK IIQ+Y
Sbjct: 67 KVKNLKRRHPEVKVVISIGGRGVNTP----FDPAEENVWVSNAKESLKLIIQKYSDDSGN 122
Query: 113 -LDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQS--VISVATIAPFYSTALPYIKLY 169
+DGIDI YE S FA +G+LIT+LK I+V +IAP + + Y KLY
Sbjct: 123 LIDGIDIHYEHI----RSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLY 178
Query: 170 KDYGHVVDYVNYQFYTDK--VRSPRGYLEAFKLRVEQFGREKMVPSYEVN 217
+++V+YQF + V + ++E FK + + K++P + +
Sbjct: 179 NAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTD 228
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 101 FSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFY- 159
+ L ++++ + LDG+D+D E+ S P I L L + +I++A +A
Sbjct: 114 YQPLLAMVRRHQLDGLDLDVEE----EMSLPGIIRLIDRLKLDLGDDFIITLAPVAAALL 169
Query: 160 ----STALPYIKLYKDYGHVVDYVNYQFYT 185
+ Y +L + G + + N QFY
Sbjct: 170 GIGNLSGFDYRQLEQQRGSKISWYNAQFYN 199
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRN-----ASTPS----FAYCIGELITQLKNQSVISVA 153
S + IIQ+Y LDGID+D+E FP+ AS P+ F + L + Q ++++A
Sbjct: 138 SAQKIIQQYGLDGIDLDWE-FPVNGAWGLVASQPADRDNFTALLKSLREAVGEQKLVTIA 196
Query: 154 TIA 156
A
Sbjct: 197 VGA 199
>pdb|4AC1|X Chain X, The Structure Of A Fungal
Endo-Beta-N-Acetylglucosaminidase From Glycosyl
Hydrolase Family 18, At 1.3a Resolution
Length = 283
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 101 FSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYS 160
+ L+ I + L+G+D+D E+ PM S I L +I++A +A
Sbjct: 107 YGQLRDAIVNFQLEGMDLDVEQ-PM---SQQGIDRLIARLRADFGPDFLITLAPVASALE 162
Query: 161 -----TALPYIKLYKDYGHVVDYVNYQFYT 185
+ Y L + G+ +D+ N QFY+
Sbjct: 163 DSSNLSGFSYTALQQTQGNDIDWYNTQFYS 192
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 90 PRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPS----FAYCIGEL----- 140
P N Q +I+ S+ +++Y DG+D D+E +P S P F + E+
Sbjct: 92 PENRQTFIT----SVIKFLRQYEFDGLDFDWE-YPGSRGSPPQDKHLFTVLVQEMREAFE 146
Query: 141 --ITQLKNQSVISVATIAPFYST-----ALPYIKLYKDYGHVVDY 178
Q+ ++ A +A S +P + Y DY HV+ Y
Sbjct: 147 QEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTY 191
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 90 PRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPS----FAYCIGEL----- 140
P N Q +I+ S+ +++Y DG+D D+E +P S P F + E+
Sbjct: 96 PENRQTFIT----SVIKFLRQYEFDGLDFDWE-YPGSRGSPPQDKHLFTVLVQEMREAFE 150
Query: 141 --ITQLKNQSVISVATIAPFYST-----ALPYIKLYKDYGHVVDY 178
Q+ ++ A +A S +P + Y DY HV+ Y
Sbjct: 151 QEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTY 195
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DID+E +P + A F + E+ T L Q++ P+ T
Sbjct: 125 SCVRIMKDYGFDGVDIDWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 182
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 183 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 213
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DID+E +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVDIDWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DID+E +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVDIDWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 106 SIIQEYHLDGIDIDYEKFPMRNASTPS-FAYCIGELITQLKN 146
+ +EY LDG DIDYE++ + + PS + G + + KN
Sbjct: 99 AFTKEYKLDGFDIDYEEYDNWDKNFPSLLVFARGLYLAKEKN 140
>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 291
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 199 KLRVEQFGREKMVPSYEVNGR---GIQGQAFFDALRLLQANGFE 239
+L E+ RE + +Y V+G ++G++FFD L+ + GF+
Sbjct: 49 RLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFD 92
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DID++ +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVDIDWQ-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|1UEA|B Chain B, Mmp-3TIMP-1 Complex
pdb|1UEA|D Chain D, Mmp-3TIMP-1 Complex
Length = 184
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 131 PSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQF-YTDKVR 189
P A+C +L+ + K VA + + K+YK + + D + +F YT +
Sbjct: 8 PQTAFCNSDLVIRAKFVGTPEVAQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAME 67
Query: 190 SPRGYLEAFKLRVEQF 205
S GY R E+F
Sbjct: 68 SVCGYFHRSHARSEEF 83
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN---QS 148
N Q ++++A L+ +Y DG+D+D+E +P S L+ L N Q
Sbjct: 94 NRQTFVNSAIRFLR----KYSFDGLDLDWE-YPGSQGSPAVDKERFTTLVQDLANAFQQE 148
Query: 149 VISVATIAPFYSTALPYIKLYKDYGHVVDYV 179
+ S A+P + Y D G+ VD +
Sbjct: 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN---QS 148
N Q ++++A L+ +Y DG+D+D+E +P S L+ L N Q
Sbjct: 94 NRQTFVNSAIRFLR----KYSFDGLDLDWE-YPGSQGSPAVDKERFTTLVQDLANAFQQE 148
Query: 149 VISVATIAPFYSTALPYIKLYKDYGHVVDYV 179
+ S A+P + Y D G+ VD +
Sbjct: 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN---QS 148
N Q ++++A L+ +Y DG+D+D+E +P S L+ L N Q
Sbjct: 94 NRQTFVNSAIRFLR----KYSFDGLDLDWE-YPGSQGSPAVDKERFTTLVQDLANAFQQE 148
Query: 149 VISVATIAPFYSTALPYIKLYKDYGHVVDYV 179
+ S A+P + Y D G+ VD +
Sbjct: 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN---QS 148
N Q ++++A L+ +Y DG+D+D+E +P S L+ L N Q
Sbjct: 94 NRQTFVNSAIRFLR----KYSFDGLDLDWE-YPGSQGSPAVDKERFTTLVQDLANAFQQE 148
Query: 149 VISVATIAPFYSTALPYIKLYKDYGHVVDYV 179
+ S A+P + Y D G+ VD +
Sbjct: 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 102 SSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYS 160
+S++S+I +Y DGIDID E N + +F I L + ++ TI+ Y
Sbjct: 99 NSIQSLIDKYGFDGIDIDLESGIYLNGNDTNFKNPTTPQIVNL----ISAIRTISDHYG 153
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN---QS 148
N Q ++++A L+ +Y DG+D+D+E +P S L+ L N Q
Sbjct: 94 NRQTFVNSAIRFLR----KYSFDGLDLDWE-YPGSQGSPAVDKERFTTLVQDLANAFQQE 148
Query: 149 VISVATIAPFYSTALPYIKLYKDYGHVVDYV 179
+ S A+P + Y D G+ VD +
Sbjct: 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DI++E +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVDINWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG+DI++E +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVDINWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST- 161
S I+++Y DG++ID+E +P + A F + E+ T L Q++ P+ T
Sbjct: 126 SCVRIMKDYGFDGVNIDWE-YP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 162 -----ALPYIKLYKDYGHVV---DYVNYQFY 184
A + Y +V DY+N Y
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
>pdb|3V96|A Chain A, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 184
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 131 PSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQF-YTDKVR 189
P A+C +L+ + K VA + + K+YK + + D + +F YT +
Sbjct: 8 PQTAFCNSDLVIRAKFVGTPEVAQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAME 67
Query: 190 SPRGYLEAFKLRVEQF 205
S GY R E+F
Sbjct: 68 SVCGYFHRSHNRSEEF 83
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 102 SSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYS 160
+S++S+I +Y DGIDID + N + +F I L + ++ TI+ Y
Sbjct: 99 NSIQSLIDKYGFDGIDIDLQSGIYLNGNDTNFKNPTTPQIVNL----ISAIRTISDHYG 153
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 102 SSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYS 160
+S++S+I +Y DGIDID + N + +F I L + ++ TI+ Y
Sbjct: 99 NSIQSLIDKYGFDGIDIDLQSGIYLNGNDTNFKNPTTPQIVNL----ISAIRTISDHYG 153
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 107 IIQEYHLDGIDIDYEKFPMRNAST----PSFAYCIGELITQLKNQSVISVATIAPFYSTA 162
++ Y DG+DID E+ + A PS + + + +I++A P+ +++
Sbjct: 110 LVDTYGFDGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSS 169
Query: 163 LPYIKLYKDYGHVVDYVNYQFY 184
Y + D++N Q+Y
Sbjct: 170 GKYAPYINNLDSYYDFINPQYY 191
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEK 122
N +N +S+ S+ +EY DG+DID E
Sbjct: 92 NSSASATNFANSVYSVXREYGFDGVDIDLEN 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,431,771
Number of Sequences: 62578
Number of extensions: 292607
Number of successful extensions: 834
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 30
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)