Query 046094
Match_columns 245
No_of_seqs 204 out of 1723
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06544 GH18_narbonin Narbonin 100.0 4.1E-49 8.9E-54 331.9 23.3 238 1-245 2-247 (253)
2 cd02879 GH18_plant_chitinase_c 100.0 3.4E-46 7.3E-51 323.1 16.2 229 2-245 7-287 (299)
3 cd06548 GH18_chitinase The GH1 100.0 3.4E-43 7.5E-48 307.5 17.3 212 2-222 3-267 (322)
4 cd02873 GH18_IDGF The IDGF's ( 100.0 1.4E-42 2.9E-47 312.3 16.7 205 7-222 12-279 (413)
5 cd02872 GH18_chitolectin_chito 100.0 6.7E-43 1.5E-47 310.4 13.7 207 8-223 12-249 (362)
6 COG3325 ChiA Chitinase [Carboh 100.0 3.2E-42 7E-47 299.2 17.0 215 2-225 42-321 (441)
7 cd02878 GH18_zymocin_alpha Zym 100.0 2.8E-40 6E-45 291.4 15.6 195 12-223 16-247 (345)
8 smart00636 Glyco_18 Glycosyl h 100.0 2E-39 4.3E-44 285.2 15.8 212 2-223 4-242 (334)
9 KOG2806 Chitinase [Carbohydrat 100.0 3.5E-39 7.6E-44 291.2 14.6 211 4-224 60-304 (432)
10 cd06545 GH18_3CO4_chitinase Th 100.0 1.5E-38 3.3E-43 269.4 16.7 222 2-245 3-236 (253)
11 cd06546 GH18_CTS3_chitinase GH 100.0 7.1E-36 1.5E-40 252.7 20.1 214 15-245 21-250 (256)
12 cd02876 GH18_SI-CLP Stabilin-1 100.0 3.7E-37 7.9E-42 269.1 12.6 222 2-237 7-255 (318)
13 PF00704 Glyco_hydro_18: Glyco 100.0 4.9E-36 1.1E-40 264.0 7.4 215 1-223 4-250 (343)
14 cd00598 GH18_chitinase-like Th 100.0 8.6E-33 1.9E-37 227.5 15.2 200 2-245 3-204 (210)
15 cd02871 GH18_chitinase_D-like 100.0 3.2E-32 7E-37 237.1 17.1 216 17-245 21-292 (312)
16 cd02874 GH18_CFLE_spore_hydrol 100.0 1.4E-30 3E-35 227.2 17.6 201 20-238 22-249 (313)
17 cd06549 GH18_trifunctional GH1 100.0 3.7E-28 8.1E-33 210.4 15.4 202 21-237 21-236 (298)
18 cd02875 GH18_chitobiase Chitob 100.0 4.4E-28 9.5E-33 214.5 15.4 146 66-222 75-238 (358)
19 cd06542 GH18_EndoS-like Endo-b 99.9 8.8E-26 1.9E-30 191.5 13.7 209 13-245 18-235 (255)
20 cd02877 GH18_hevamine_XipI_cla 99.9 3E-24 6.5E-29 183.4 17.8 209 22-245 23-262 (280)
21 cd06543 GH18_PF-ChiA-like PF-C 99.8 1.1E-18 2.3E-23 150.3 14.5 154 20-186 22-184 (294)
22 COG3858 Predicted glycosyl hyd 99.7 5.2E-17 1.1E-21 141.8 10.8 128 87-222 186-327 (423)
23 COG3469 Chitinase [Carbohydrat 99.7 2.8E-16 6.1E-21 128.4 10.9 181 53-244 85-300 (332)
24 KOG4701 Chitinase [Cell wall/m 99.4 1.2E-11 2.6E-16 106.7 17.0 210 23-245 52-290 (568)
25 KOG2091 Predicted member of gl 99.0 1.9E-09 4.1E-14 91.2 10.0 163 56-223 130-308 (392)
26 cd06547 GH85_ENGase Endo-beta- 98.5 4.1E-06 8.9E-11 73.8 13.2 168 57-237 50-234 (339)
27 PF02638 DUF187: Glycosyl hydr 97.8 8.5E-05 1.9E-09 64.9 8.2 118 101-220 143-300 (311)
28 PF03644 Glyco_hydro_85: Glyco 97.1 0.00095 2.1E-08 58.3 5.7 153 57-220 46-209 (311)
29 PF11340 DUF3142: Protein of u 96.8 0.033 7.2E-07 44.4 11.2 112 97-218 26-138 (181)
30 PF13200 DUF4015: Putative gly 96.5 0.049 1.1E-06 47.6 11.4 99 85-185 112-227 (316)
31 KOG2331 Predicted glycosylhydr 94.9 0.43 9.2E-06 43.0 10.9 157 68-239 124-294 (526)
32 TIGR01370 cysRS possible cyste 92.8 0.69 1.5E-05 40.5 8.3 91 56-149 84-205 (315)
33 cd02810 DHOD_DHPD_FMN Dihydroo 92.7 2.7 5.8E-05 36.1 11.9 80 58-159 88-173 (289)
34 PF02057 Glyco_hydro_59: Glyco 92.4 0.26 5.7E-06 47.0 5.6 119 56-186 115-241 (669)
35 PRK07259 dihydroorotate dehydr 91.3 3.9 8.4E-05 35.4 11.3 70 68-159 91-168 (301)
36 cd04740 DHOD_1B_like Dihydroor 90.5 5.7 0.00012 34.2 11.6 71 67-159 88-165 (296)
37 PLN02495 oxidoreductase, actin 88.9 9.7 0.00021 34.4 12.0 104 56-180 101-215 (385)
38 PF14883 GHL13: Hypothetical g 88.8 15 0.00032 31.8 14.1 140 88-237 116-287 (294)
39 COG1306 Uncharacterized conser 86.6 2.6 5.6E-05 36.5 6.5 93 88-185 187-297 (400)
40 COG1649 Uncharacterized protei 85.5 4.9 0.00011 36.5 8.2 89 94-186 184-309 (418)
41 PF02055 Glyco_hydro_30: O-Gly 85.4 1.5 3.2E-05 40.9 5.0 122 56-186 156-313 (496)
42 cd02940 DHPD_FMN Dihydropyrimi 84.1 25 0.00054 30.4 11.8 82 57-159 88-179 (299)
43 PRK08318 dihydropyrimidine deh 82.3 34 0.00074 31.1 12.5 83 57-160 88-180 (420)
44 cd02930 DCR_FMN 2,4-dienoyl-Co 81.0 40 0.00086 29.9 13.1 52 95-147 134-204 (353)
45 PF13199 Glyco_hydro_66: Glyco 80.7 4.4 9.5E-05 38.4 6.1 60 88-148 235-303 (559)
46 cd02801 DUS_like_FMN Dihydrour 80.2 24 0.00053 28.8 10.0 63 64-145 50-123 (231)
47 PRK12568 glycogen branching en 77.4 5 0.00011 39.2 5.6 47 101-147 390-452 (730)
48 PRK14706 glycogen branching en 76.4 9 0.00019 37.0 7.0 61 89-153 280-356 (639)
49 cd04735 OYE_like_4_FMN Old yel 76.0 42 0.00091 29.8 10.8 88 95-183 141-256 (353)
50 PRK10550 tRNA-dihydrouridine s 75.8 36 0.00079 29.7 10.1 95 68-182 62-168 (312)
51 cd02933 OYE_like_FMN Old yello 72.6 20 0.00044 31.7 7.8 75 105-181 158-260 (338)
52 PF07745 Glyco_hydro_53: Glyco 72.4 32 0.0007 30.4 8.9 139 67-205 70-228 (332)
53 PRK12313 glycogen branching en 70.9 8.9 0.00019 37.0 5.6 47 101-147 291-352 (633)
54 PF10566 Glyco_hydro_97: Glyco 68.3 29 0.00064 29.8 7.6 84 52-153 72-155 (273)
55 PRK02506 dihydroorotate dehydr 68.1 27 0.00059 30.5 7.6 82 56-159 80-168 (310)
56 PRK14705 glycogen branching en 66.2 13 0.00028 38.6 5.8 48 100-147 885-948 (1224)
57 PLN02960 alpha-amylase 66.1 20 0.00043 35.9 6.8 45 101-146 538-600 (897)
58 cd04733 OYE_like_2_FMN Old yel 65.7 30 0.00066 30.4 7.5 17 105-121 155-171 (338)
59 PRK12677 xylose isomerase; Pro 65.4 26 0.00057 31.6 7.1 48 105-153 37-85 (384)
60 PRK07565 dihydroorotate dehydr 65.1 49 0.0011 29.1 8.7 79 57-158 91-175 (334)
61 PRK11815 tRNA-dihydrouridine s 64.9 28 0.00061 30.7 7.1 58 68-144 64-132 (333)
62 PF14587 Glyco_hydr_30_2: O-Gl 64.2 37 0.00081 30.6 7.6 61 89-154 149-223 (384)
63 TIGR00742 yjbN tRNA dihydrouri 63.4 32 0.00069 30.2 7.1 59 67-144 53-122 (318)
64 cd04738 DHOD_2_like Dihydrooro 63.3 1E+02 0.0023 27.0 10.4 88 58-158 117-212 (327)
65 PRK05286 dihydroorotate dehydr 63.0 85 0.0019 27.8 9.8 88 59-159 128-222 (344)
66 cd04741 DHOD_1A_like Dihydroor 63.0 1E+02 0.0022 26.6 10.3 70 67-159 90-168 (294)
67 PRK05402 glycogen branching en 61.0 19 0.00041 35.4 5.8 48 100-147 385-448 (726)
68 TIGR01515 branching_enzym alph 60.9 22 0.00047 34.2 6.1 47 101-147 277-339 (613)
69 TIGR03234 OH-pyruv-isom hydrox 60.6 15 0.00032 30.7 4.4 40 104-154 19-58 (254)
70 TIGR02631 xylA_Arthro xylose i 59.6 42 0.00092 30.2 7.3 47 106-153 39-86 (382)
71 TIGR00737 nifR3_yhdG putative 59.5 57 0.0012 28.4 8.0 59 67-144 61-130 (319)
72 cd06522 GH25_AtlA-like AtlA is 58.7 30 0.00066 27.7 5.8 36 106-142 81-120 (192)
73 PF07745 Glyco_hydro_53: Glyco 58.0 32 0.00069 30.5 6.1 68 59-146 160-230 (332)
74 PF07364 DUF1485: Protein of u 58.0 82 0.0018 27.3 8.5 109 58-184 50-161 (292)
75 smart00633 Glyco_10 Glycosyl h 57.4 1.1E+02 0.0025 25.5 9.4 72 56-142 106-180 (254)
76 PRK10605 N-ethylmaleimide redu 57.3 58 0.0013 29.1 7.8 17 105-121 165-181 (362)
77 cd02929 TMADH_HD_FMN Trimethyl 55.7 45 0.00097 29.9 6.8 16 106-121 157-172 (370)
78 PRK01060 endonuclease IV; Prov 54.7 33 0.00073 28.9 5.7 45 105-150 18-62 (281)
79 TIGR00542 hxl6Piso_put hexulos 54.4 25 0.00055 29.8 4.9 47 106-153 23-70 (279)
80 PF02065 Melibiase: Melibiase; 54.2 47 0.001 30.1 6.7 53 99-154 170-233 (394)
81 PF14871 GHL6: Hypothetical gl 51.7 20 0.00042 27.2 3.3 22 99-120 111-132 (132)
82 TIGR02103 pullul_strch alpha-1 51.4 40 0.00087 34.0 6.2 28 94-121 471-498 (898)
83 cd04739 DHOD_like Dihydroorota 51.0 1.7E+02 0.0037 25.6 11.7 80 57-159 89-174 (325)
84 PF11090 DUF2833: Protein of u 50.3 42 0.00091 23.5 4.5 68 72-147 11-84 (86)
85 PF06415 iPGM_N: BPG-independe 50.2 43 0.00092 27.9 5.3 88 54-158 15-104 (223)
86 cd00019 AP2Ec AP endonuclease 50.1 46 0.00099 28.1 5.8 48 105-153 16-64 (279)
87 PRK08207 coproporphyrinogen II 50.0 1.4E+02 0.003 27.9 9.3 84 55-148 268-352 (488)
88 PLN03244 alpha-amylase; Provis 49.9 48 0.001 33.0 6.3 19 101-119 513-531 (872)
89 PRK05799 coproporphyrinogen II 48.9 1.6E+02 0.0036 26.1 9.4 79 55-142 98-177 (374)
90 TIGR01036 pyrD_sub2 dihydrooro 48.8 1.9E+02 0.0041 25.5 11.4 90 58-160 124-222 (335)
91 cd02803 OYE_like_FMN_family Ol 48.7 41 0.00089 29.2 5.4 26 95-121 138-163 (327)
92 PRK09989 hypothetical protein; 48.2 54 0.0012 27.4 5.9 38 106-154 22-59 (258)
93 TIGR00539 hemN_rel putative ox 47.6 1.8E+02 0.0039 25.8 9.4 79 55-142 99-178 (360)
94 PF01207 Dus: Dihydrouridine s 47.5 44 0.00096 29.1 5.3 102 61-184 46-160 (309)
95 PRK05904 coproporphyrinogen II 47.5 1.6E+02 0.0034 26.2 8.9 79 55-142 102-181 (353)
96 cd06602 GH31_MGAM_SI_GAA This 47.4 54 0.0012 29.0 6.0 34 87-125 134-167 (339)
97 PF08869 XisI: XisI protein; 47.1 11 0.00023 27.8 1.2 26 197-222 80-106 (111)
98 cd02932 OYE_YqiM_FMN Old yello 46.4 48 0.001 29.1 5.5 86 95-182 151-261 (336)
99 cd06600 GH31_MGAM-like This fa 46.1 63 0.0014 28.2 6.1 34 87-125 129-162 (317)
100 PF13547 GTA_TIM: GTA TIM-barr 46.0 92 0.002 26.9 6.7 87 94-186 4-109 (299)
101 PRK13210 putative L-xylulose 5 45.7 57 0.0012 27.5 5.7 47 106-153 23-70 (284)
102 PRK08446 coproporphyrinogen II 45.2 2E+02 0.0043 25.4 9.2 78 55-141 97-175 (350)
103 PRK13209 L-xylulose 5-phosphat 44.6 48 0.001 28.0 5.1 47 106-153 28-75 (283)
104 PRK07379 coproporphyrinogen II 44.5 1.9E+02 0.004 26.2 9.1 78 55-141 114-192 (400)
105 PF06925 MGDG_synth: Monogalac 44.2 94 0.002 24.1 6.4 80 136-215 77-168 (169)
106 PF02156 Glyco_hydro_26: Glyco 43.7 2.1E+02 0.0046 25.0 8.9 88 92-186 128-232 (311)
107 cd06599 GH31_glycosidase_Aec37 43.7 64 0.0014 28.1 5.8 32 87-122 137-168 (317)
108 PRK09997 hydroxypyruvate isome 43.3 75 0.0016 26.5 6.0 38 105-153 21-58 (258)
109 cd06591 GH31_xylosidase_XylS X 43.3 67 0.0015 28.0 5.9 32 87-122 128-159 (319)
110 PF14885 GHL15: Hypothetical g 41.6 33 0.00071 23.6 2.9 41 76-120 32-75 (79)
111 smart00812 Alpha_L_fucos Alpha 41.3 1.6E+02 0.0035 26.6 8.1 83 57-143 132-222 (384)
112 PRK00301 aat leucyl/phenylalan 40.8 47 0.001 27.8 4.2 67 50-121 110-189 (233)
113 PF04468 PSP1: PSP1 C-terminal 40.5 1.2E+02 0.0025 21.1 5.6 48 98-146 25-81 (88)
114 PRK13347 coproporphyrinogen II 40.5 1.4E+02 0.0031 27.4 7.8 37 105-142 194-230 (453)
115 PRK13523 NADPH dehydrogenase N 40.5 2.3E+02 0.0051 25.0 8.9 17 105-121 148-164 (337)
116 TIGR02402 trehalose_TreZ malto 40.2 67 0.0014 30.5 5.6 42 101-146 226-267 (542)
117 TIGR01037 pyrD_sub1_fam dihydr 39.4 2.4E+02 0.0053 24.1 11.6 69 68-158 90-167 (300)
118 cd04747 OYE_like_5_FMN Old yel 39.4 72 0.0016 28.5 5.5 25 96-121 142-166 (361)
119 PF01261 AP_endonuc_2: Xylose 39.1 24 0.00052 27.9 2.2 44 106-153 2-45 (213)
120 cd06597 GH31_transferase_CtsY 39.1 83 0.0018 27.8 5.8 31 87-121 156-186 (340)
121 PRK10558 alpha-dehydro-beta-de 38.7 62 0.0013 27.4 4.7 34 105-141 33-66 (256)
122 cd02911 arch_FMN Archeal FMN-b 38.4 2.3E+02 0.005 23.5 10.3 89 68-182 72-172 (233)
123 TIGR02104 pulA_typeI pullulana 37.7 74 0.0016 30.6 5.6 40 100-147 300-339 (605)
124 PRK05628 coproporphyrinogen II 37.3 2.3E+02 0.005 25.2 8.5 78 55-141 107-185 (375)
125 cd06598 GH31_transferase_CtsZ 37.2 81 0.0018 27.5 5.4 30 87-121 134-163 (317)
126 PLN02982 galactinol-raffinose 36.9 2.4E+02 0.0051 28.3 8.7 58 98-155 468-534 (865)
127 COG3623 SgaU Putative L-xylulo 36.9 1.6E+02 0.0034 25.0 6.5 83 50-144 51-141 (287)
128 PRK10785 maltodextrin glucosid 36.7 60 0.0013 31.1 4.9 60 88-148 303-364 (598)
129 PF01120 Alpha_L_fucos: Alpha- 36.5 3E+02 0.0065 24.3 10.2 83 57-143 142-235 (346)
130 TIGR00736 nifR3_rel_arch TIM-b 36.5 2.5E+02 0.0055 23.4 9.5 98 57-182 59-168 (231)
131 PLN02899 alpha-galactosidase 36.2 1.8E+02 0.004 28.1 7.7 53 101-159 197-249 (633)
132 cd06414 GH25_LytC-like The Lyt 35.9 1.7E+02 0.0037 23.3 6.8 43 106-149 81-127 (191)
133 PRK10128 2-keto-3-deoxy-L-rham 35.9 54 0.0012 28.1 3.9 33 106-141 33-65 (267)
134 PRK08255 salicylyl-CoA 5-hydro 35.1 2.2E+02 0.0048 28.2 8.6 25 96-121 549-573 (765)
135 PF00834 Ribul_P_3_epim: Ribul 35.0 1.8E+02 0.004 23.6 6.8 66 106-187 74-139 (201)
136 KOG2872 Uroporphyrinogen decar 34.8 92 0.002 27.1 5.0 47 106-153 266-333 (359)
137 PLN03231 putative alpha-galact 34.0 2.5E+02 0.0053 25.2 7.9 53 101-158 165-217 (357)
138 TIGR00259 thylakoid_BtpA membr 33.9 3E+02 0.0065 23.4 8.7 64 56-144 188-256 (257)
139 KOG0622 Ornithine decarboxylas 33.8 3.7E+02 0.008 24.7 8.8 81 55-145 153-238 (448)
140 TIGR03852 sucrose_gtfA sucrose 33.8 2E+02 0.0044 26.8 7.5 51 102-153 172-229 (470)
141 COG0296 GlgB 1,4-alpha-glucan 33.6 69 0.0015 31.0 4.6 47 101-147 285-347 (628)
142 PF05990 DUF900: Alpha/beta hy 33.4 2.8E+02 0.006 22.9 9.6 65 64-144 13-90 (233)
143 PRK08599 coproporphyrinogen II 33.2 2.9E+02 0.0063 24.6 8.4 79 55-142 99-178 (377)
144 COG0042 tRNA-dihydrouridine sy 33.2 3.4E+02 0.0073 23.8 11.7 39 106-145 86-135 (323)
145 PF07582 AP_endonuc_2_N: AP en 33.1 81 0.0018 20.0 3.5 40 103-144 4-44 (55)
146 TIGR03239 GarL 2-dehydro-3-deo 32.8 64 0.0014 27.2 3.9 34 105-141 26-59 (249)
147 cd03767 SR_Res_par Serine reco 32.7 1E+02 0.0022 23.4 4.8 41 102-142 19-59 (146)
148 PRK05660 HemN family oxidoredu 32.7 3.3E+02 0.0072 24.3 8.7 78 56-142 107-185 (378)
149 cd06591 GH31_xylosidase_XylS X 32.2 2E+02 0.0044 25.0 7.1 50 105-159 30-90 (319)
150 PF01136 Peptidase_U32: Peptid 32.1 1.5E+02 0.0032 24.3 6.0 47 55-121 23-69 (233)
151 smart00518 AP2Ec AP endonuclea 31.6 1.1E+02 0.0024 25.6 5.2 47 106-153 17-63 (273)
152 PRK06294 coproporphyrinogen II 31.4 3.8E+02 0.0082 23.9 9.6 77 56-141 103-180 (370)
153 cd08578 GDPD_NUC-2_fungi Putat 31.1 3.6E+02 0.0077 23.5 9.1 27 91-121 225-251 (300)
154 cd06523 GH25_PlyB-like PlyB is 30.8 87 0.0019 24.7 4.2 35 106-142 78-112 (177)
155 cd00812 LeuRS_core catalytic c 30.7 1.6E+02 0.0035 25.6 6.2 57 92-153 63-119 (314)
156 PF00563 EAL: EAL domain; Int 30.7 2.8E+02 0.006 22.1 8.7 47 106-154 163-209 (236)
157 PF08915 tRNA-Thr_ED: Archaea- 30.6 2.5E+02 0.0054 21.5 7.5 75 69-153 38-113 (138)
158 PF01487 DHquinase_I: Type I 3 30.4 2.9E+02 0.0062 22.5 7.4 55 56-121 43-97 (224)
159 TIGR01957 nuoB_fam NADH-quinon 29.9 2.1E+02 0.0046 22.0 6.0 72 56-146 72-144 (145)
160 TIGR01212 radical SAM protein, 29.8 3.7E+02 0.008 23.2 8.5 68 68-142 136-204 (302)
161 PLN02711 Probable galactinol-- 29.3 1.5E+02 0.0031 29.4 6.0 25 97-121 383-407 (777)
162 COG4724 Endo-beta-N-acetylgluc 29.1 1.4E+02 0.003 27.3 5.3 47 101-148 176-223 (553)
163 COG2342 Predicted extracellula 28.8 2.6E+02 0.0056 24.2 6.8 50 100-150 127-186 (300)
164 PRK09058 coproporphyrinogen II 28.8 3.2E+02 0.007 25.1 8.1 77 56-141 163-240 (449)
165 COG0635 HemN Coproporphyrinoge 28.7 4E+02 0.0087 24.3 8.6 80 55-145 136-215 (416)
166 PF08885 GSCFA: GSCFA family; 28.4 59 0.0013 27.5 2.9 20 57-76 156-175 (251)
167 COG0429 Predicted hydrolase of 28.3 2.2E+02 0.0048 25.3 6.5 47 101-147 93-148 (345)
168 TIGR01839 PHA_synth_II poly(R) 28.1 85 0.0018 29.9 4.2 25 102-127 237-261 (560)
169 PRK10076 pyruvate formate lyas 27.2 3.3E+02 0.0072 22.3 7.2 70 104-185 24-99 (213)
170 COG3710 CadC DNA-binding winge 27.1 1.6E+02 0.0035 22.7 4.9 35 123-157 61-97 (148)
171 CHL00023 ndhK NADH dehydrogena 26.9 3.5E+02 0.0076 22.5 7.0 76 55-148 85-161 (225)
172 PRK02412 aroD 3-dehydroquinate 26.6 3.9E+02 0.0084 22.4 10.2 79 57-155 63-142 (253)
173 PRK09441 cytoplasmic alpha-amy 26.2 1.4E+02 0.0031 27.6 5.4 46 89-142 207-252 (479)
174 COG1908 FrhD Coenzyme F420-red 26.2 2.8E+02 0.0061 20.8 5.7 43 103-147 82-124 (132)
175 KOG1411 Aspartate aminotransfe 26.0 66 0.0014 28.8 2.8 45 190-234 35-79 (427)
176 PF05691 Raffinose_syn: Raffin 26.0 1.6E+02 0.0035 29.1 5.7 24 98-121 367-390 (747)
177 COG5185 HEC1 Protein involved 26.0 88 0.0019 29.1 3.7 50 93-146 102-152 (622)
178 COG3243 PhaC Poly(3-hydroxyalk 25.8 99 0.0021 28.4 4.0 34 103-137 130-163 (445)
179 TIGR00667 aat leucyl/phenylala 25.8 1E+02 0.0023 24.8 3.7 68 49-121 79-159 (185)
180 PRK14582 pgaB outer membrane N 25.5 6.5E+02 0.014 24.7 9.9 102 132-237 513-637 (671)
181 PF07476 MAAL_C: Methylasparta 25.5 2.7E+02 0.0058 23.4 6.1 40 114-154 103-142 (248)
182 PF11909 NdhN: NADH-quinone ox 25.2 66 0.0014 24.8 2.4 24 56-79 121-144 (154)
183 PRK14815 NADH dehydrogenase su 25.2 3.7E+02 0.0079 21.7 7.5 74 56-148 88-161 (183)
184 TIGR01307 pgm_bpd_ind 2,3-bisp 25.1 5.9E+02 0.013 24.0 9.8 88 54-158 93-182 (501)
185 cd06592 GH31_glucosidase_KIAA1 24.9 2E+02 0.0044 24.8 5.8 55 103-159 34-94 (303)
186 cd06593 GH31_xylosidase_YicI Y 24.8 3.2E+02 0.007 23.5 7.1 51 104-159 29-90 (308)
187 KOG3034 Isoamyl acetate-hydrol 24.7 71 0.0015 27.7 2.7 29 112-140 53-81 (308)
188 PRK13840 sucrose phosphorylase 24.5 2.8E+02 0.0061 26.1 6.8 60 87-151 166-230 (495)
189 PRK09249 coproporphyrinogen II 24.4 4E+02 0.0088 24.4 7.9 36 105-141 193-228 (453)
190 PRK03705 glycogen debranching 24.3 92 0.002 30.4 3.8 25 97-121 314-338 (658)
191 KOG1643 Triosephosphate isomer 24.3 2.7E+02 0.0059 23.0 5.8 69 67-146 118-193 (247)
192 PRK05434 phosphoglyceromutase; 24.1 6.2E+02 0.013 23.9 9.6 87 55-158 98-186 (507)
193 PF05763 DUF835: Protein of un 23.8 2.4E+02 0.0051 21.4 5.3 66 89-159 56-122 (136)
194 smart00052 EAL Putative diguan 23.7 3.4E+02 0.0075 21.6 6.8 48 106-154 162-209 (241)
195 cd04734 OYE_like_3_FMN Old yel 23.5 82 0.0018 27.9 3.1 85 95-181 138-248 (343)
196 cd06595 GH31_xylosidase_XylS-l 23.4 2.9E+02 0.0062 23.7 6.4 61 55-121 76-158 (292)
197 smart00857 Resolvase Resolvase 23.3 2.1E+02 0.0045 21.2 5.0 42 101-142 21-63 (148)
198 COG3836 HpcH 2,4-dihydroxyhept 23.3 1.5E+02 0.0032 25.0 4.3 35 105-145 31-65 (255)
199 cd02931 ER_like_FMN Enoate red 23.3 89 0.0019 28.1 3.3 16 105-120 156-171 (382)
200 TIGR01949 AroFGH_arch predicte 23.2 2.9E+02 0.0064 23.1 6.3 73 67-153 69-141 (258)
201 COG1082 IolE Sugar phosphate i 23.2 2.2E+02 0.0047 23.6 5.6 43 105-154 21-64 (274)
202 PF01180 DHO_dh: Dihydroorotat 23.1 4.7E+02 0.01 22.3 11.6 77 68-161 96-175 (295)
203 COG3622 Hfi Hydroxypyruvate is 23.0 2.7E+02 0.0058 23.6 5.7 43 106-159 22-64 (260)
204 KOG3233 RNA polymerase III, su 22.9 2.5E+02 0.0053 24.3 5.6 26 89-114 163-188 (297)
205 PRK08208 coproporphyrinogen II 22.9 4.8E+02 0.01 23.8 8.1 77 56-141 141-218 (430)
206 cd06589 GH31 The enzymes of gl 22.9 1.6E+02 0.0036 24.7 4.7 51 55-125 68-118 (265)
207 COG1540 Uncharacterized protei 22.9 3.2E+02 0.0069 23.0 6.1 51 101-152 194-249 (252)
208 PF10865 DUF2703: Domain of un 22.8 1.4E+02 0.0031 22.2 3.7 38 116-153 1-45 (120)
209 COG1180 PflA Pyruvate-formate 22.6 4.7E+02 0.01 22.1 7.8 69 106-186 76-145 (260)
210 COG3410 Uncharacterized conser 22.5 95 0.0021 24.6 2.8 28 90-121 147-174 (191)
211 PTZ00333 triosephosphate isome 22.4 3.5E+02 0.0076 22.9 6.5 70 68-145 122-197 (255)
212 TIGR02102 pullulan_Gpos pullul 22.4 2.6E+02 0.0057 29.2 6.7 41 98-142 621-661 (1111)
213 KOG0995 Centromere-associated 22.1 1.3E+02 0.0029 28.5 4.2 54 90-147 65-119 (581)
214 PF12138 Spherulin4: Spherulat 22.1 4.8E+02 0.01 22.0 9.6 77 50-144 50-136 (253)
215 cd02008 TPP_IOR_alpha Thiamine 22.0 2.7E+02 0.0059 21.7 5.6 41 105-154 134-174 (178)
216 cd08622 PI-PLCXDc_CG14945_like 22.0 3.5E+02 0.0076 23.1 6.6 49 97-146 82-131 (276)
217 PF12876 Cellulase-like: Sugar 22.0 1.3E+02 0.0029 20.5 3.4 71 107-183 1-87 (88)
218 COG5309 Exo-beta-1,3-glucanase 21.9 4.1E+02 0.009 23.0 6.7 59 56-118 218-279 (305)
219 PLN02877 alpha-amylase/limit d 21.8 2.2E+02 0.0047 29.2 5.9 26 96-121 536-561 (970)
220 PF00724 Oxidored_FMN: NADH:fl 21.7 1E+02 0.0022 27.2 3.3 54 105-159 155-227 (341)
221 KOG1114 Tripeptidyl peptidase 21.4 4.4E+02 0.0096 27.1 7.6 74 64-153 332-406 (1304)
222 cd00338 Ser_Recombinase Serine 21.1 3.3E+02 0.0072 19.7 6.0 40 102-142 21-63 (137)
223 cd06413 GH25_muramidase_1 Unch 21.1 2.4E+02 0.0052 22.4 5.2 39 106-145 78-120 (191)
224 PF01418 HTH_6: Helix-turn-hel 20.9 79 0.0017 21.2 1.9 14 102-115 49-62 (77)
225 cd06417 GH25_LysA-like LysA is 20.7 3.4E+02 0.0075 21.5 6.0 38 106-144 72-112 (195)
226 KOG3035 Isoamyl acetate-hydrol 20.6 3.9E+02 0.0084 22.4 6.1 29 92-121 145-173 (245)
227 PF05219 DREV: DREV methyltran 20.5 1.3E+02 0.0029 25.7 3.5 57 103-160 127-194 (265)
228 cd06416 GH25_Lys1-like Lys-1 i 20.4 4.4E+02 0.0095 20.9 9.0 81 52-149 38-124 (196)
229 PRK09505 malS alpha-amylase; R 20.3 91 0.002 30.5 2.9 23 99-121 441-463 (683)
230 cd00817 ValRS_core catalytic c 20.1 3.8E+02 0.0083 24.0 6.7 52 96-152 84-135 (382)
231 PF08234 Spindle_Spc25: Chromo 20.0 94 0.002 20.8 2.1 15 132-146 60-74 (74)
No 1
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=4.1e-49 Score=331.91 Aligned_cols=238 Identities=44% Similarity=0.727 Sum_probs=195.9
Q ss_pred CcccccccCcCCCCcccCCCCCc--eeEEEEceeeecCCCCCccCCccCcccCCC-CCHHHHHHHHHhCCCceEEEEEcC
Q 046094 1 MMEYIGATGIPVKFDSMPIKDGI--DFHFILSFAIDVDPSGNYQNGKFSPYWAET-LTPDSVAAVKARHPNVKALASLSG 77 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~~~--~THiiy~fa~~~~~~g~~~~~~~~~~~~d~-~~~~~~~~lk~~~~~~kvllsiGG 77 (245)
+.||||+.+.+. ++++||.+. ||||||||+.+.+...+..++++.+.|++. ..++++..||+++|++|||+||||
T Consensus 2 ~~~y~~~~~~~~--~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG 79 (253)
T cd06544 2 FREYIGADFNGV--TFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGG 79 (253)
T ss_pred chhhhccCCCCc--cccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCC
Confidence 469999999884 455666555 999999999545442233357777778655 578999999999999999999999
Q ss_pred CCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCC
Q 046094 78 WSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAP 157 (245)
Q Consensus 78 ~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p 157 (245)
|+.++ .....++.+|++|++++++|+++++++||||||||||| ||. .++++|+.|+++||++|++.+++++++++|
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE-~~~--~d~~~f~~ll~~l~~~l~~~~~lt~a~vap 155 (253)
T cd06544 80 RGVQN-NPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYE-HFP--ADPDTFVECIGQLITELKNNGVIKVASIAP 155 (253)
T ss_pred CCCCC-CccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecc-cCC--cCHHHHHHHHHHHHHHhhhcCCeEEEEecC
Confidence 99754 22345678999999999999999999999999999999 885 468899999999999999999999999888
Q ss_pred CCCC-chhhHHHHHhhcCcceEEEEccCCCCCC-CCcchHHHHHHHHhCCCCCCeeeeeccCCCccc---cchHHHHHHH
Q 046094 158 FYST-ALPYIKLYKDYGHVVDYVNYQFYTDKVR-SPRGYLEAFKLRVEQFGREKMVPSYEVNGRGIQ---GQAFFDALRL 232 (245)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~vD~~nyd~~~~~~~-~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG~~~~---~~~~~~~~~~ 232 (245)
.... ...|..++.++.+++|+|+||+|+.+.. ++..+.+....+.+++|++||++|+|.+++.|. ..++.++|..
T Consensus 156 ~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~~~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~~~v~~~~~~~~lp~ 235 (253)
T cd06544 156 SEDAEQSHYLALYNAYGDYIDYVNYQFYNYGVPTTVAKYVEFYDEVANNYPGKKVLASFSTDGEDGANIPGEIFIGGCKR 235 (253)
T ss_pred CccccccccHHHHHHhhCceeEEEhhhhCCCCCCCHHHHHHHHHHHHhCCCcccEEEEEecCCCccCcCChHHhhhhchH
Confidence 8765 3345666789999999999999997542 344455555556789999999999999999886 4677999999
Q ss_pred HHHcCcccccccC
Q 046094 233 LQANGFEVNGGVL 245 (245)
Q Consensus 233 ~~~~g~~~~Gv~~ 245 (245)
+++.+ ++||||+
T Consensus 236 l~~~~-~~gGvm~ 247 (253)
T cd06544 236 LKKNG-SLPGVFI 247 (253)
T ss_pred hhhCC-CCCeEEE
Confidence 99998 9999996
No 2
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=3.4e-46 Score=323.06 Aligned_cols=229 Identities=19% Similarity=0.232 Sum_probs=166.7
Q ss_pred cccccccCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcc-cCCCCCHHHHHHHHHhCCCceEEEEEcCCCC
Q 046094 2 MEYIGATGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPY-WAETLTPDSVAAVKARHPNVKALASLSGWSL 80 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~-~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~ 80 (245)
+||..+. .+|.|++||+++||||+|+|+ .+++++. ++... +.+....+..+.+|+++|++|+|+|||||+.
T Consensus 7 ~Y~~~w~---~~~~~~~i~~~~~THi~yaf~-~~~~~~~----~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~ 78 (299)
T cd02879 7 GYWPAWS---EEFPPSNIDSSLFTHLFYAFA-DLDPSTY----EVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS 78 (299)
T ss_pred EEECCCC---CCCChhHCCcccCCEEEEEEE-EecCCCC----EEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 4555554 589999999999999999999 5776552 12211 1122223344688999999999999999997
Q ss_pred CCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhc-------CCcEE
Q 046094 81 GSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN-------QSVIS 151 (245)
Q Consensus 81 ~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~-------~~~~~ 151 (245)
++..|+ +++++.|++|+++ +++++++|+||||||||| ||..+.|+++|+.||++||++|++ .++++
T Consensus 79 ~s~~fs~~~~~~~~R~~fi~s----iv~~l~~~~fDGidiDWE-~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~l 153 (299)
T cd02879 79 DSSAFAAMASDPTARKAFINS----SIKVARKYGFDGLDLDWE-FPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLL 153 (299)
T ss_pred CCchhhHHhCCHHHHHHHHHH----HHHHHHHhCCCceeeccc-CCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEE
Confidence 667787 5889999999554 559999999999999999 998888899999999999999983 45777
Q ss_pred EEEeCCCCCC----chhhHHH--HHhhcCcceEEEEccCCCCCCC-Ccch------------H-HHHHHHHhCCCCCCee
Q 046094 152 VATIAPFYST----ALPYIKL--YKDYGHVVDYVNYQFYTDKVRS-PRGY------------L-EAFKLRVEQFGREKMV 211 (245)
Q Consensus 152 ~~~v~p~~~~----~~~~~~~--~~~~~~~vD~~nyd~~~~~~~~-~~~~------------~-~~~~~~~~g~~~~Kl~ 211 (245)
++++++.... ....+++ +.+.+|+|..|+||+||+|... +++. . .+..++.+|+||+||+
T Consensus 154 s~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~Klv 233 (299)
T cd02879 154 TAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLV 233 (299)
T ss_pred EeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence 7776543321 1111222 2444555555559999887531 1111 1 1457789999999999
Q ss_pred eeeccCCCcccc----------------------chHHHHHHHHHHcCcccccccC
Q 046094 212 PSYEVNGRGIQG----------------------QAFFDALRLLQANGFEVNGGVL 245 (245)
Q Consensus 212 lGvp~yG~~~~~----------------------~~~~~~~~~~~~~g~~~~Gv~~ 245 (245)
||+|+|||+|+. .++...++.+++.| +||+|+
T Consensus 234 lGvp~YGr~~~~~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~--lgGv~~ 287 (299)
T cd02879 234 LGLPLYGRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKG--LLGYFA 287 (299)
T ss_pred EEeccccccccccCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhCC--CCeEEE
Confidence 999999999842 24466677777776 899985
No 3
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=3.4e-43 Score=307.53 Aligned_cols=212 Identities=18% Similarity=0.211 Sum_probs=153.6
Q ss_pred cccccccCcCCCCccc-CCCCCceeEEEEceeeecCCCCCccCCccCccc---------------C--CCCCHHHHHHHH
Q 046094 2 MEYIGATGIPVKFDSM-PIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYW---------------A--ETLTPDSVAAVK 63 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~---------------~--d~~~~~~~~~lk 63 (245)
+||-.+..-...+.+. +||+++||||+|||+ .++++|.+.... +.| . ....+.++..||
T Consensus 3 ~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~-~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 79 (322)
T cd06548 3 GYFTNWGIYGRNYFVTDDIPADKLTHINYAFA-DIDGDGGVVTSD--DEAADEAAQSVDGGADTDDQPLKGNFGQLRKLK 79 (322)
T ss_pred EEeCCCcccCCCCCcccCCChhHCcEEEEEee-eEcCCCCeEccC--hhhhhhccccCCcccccCCccchhHHHHHHHHH
Confidence 4555554444456777 699999999999999 588888653211 101 1 124578889999
Q ss_pred HhCCCceEEEEEcCCCCCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC---------CCChhh
Q 046094 64 ARHPNVKALASLSGWSLGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR---------NASTPS 132 (245)
Q Consensus 64 ~~~~~~kvllsiGG~~~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~---------~~d~~~ 132 (245)
+++|++|||+|||||+. +..|+ +++++.|++|++ ++++++++|+||||||||| ||.. ..++++
T Consensus 80 ~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~----siv~~l~~~~fDGidiDwE-~p~~~~~~~~~~~~~d~~~ 153 (322)
T cd06548 80 QKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFAD----SAVDFIRKYGFDGIDIDWE-YPGSGGAPGNVARPEDKEN 153 (322)
T ss_pred HhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHH----HHHHHHHhcCCCeEEECCc-CCCCCCCCCCCCChhHHHH
Confidence 99999999999999985 45666 478999999955 5559999999999999999 9975 357889
Q ss_pred HHHHHHHHHHHHhcC------CcEEEEEeCCCCCCchhh-HHHHHhhcCcceEEEEccCCCCCCCCcc------------
Q 046094 133 FAYCIGELITQLKNQ------SVISVATIAPFYSTALPY-IKLYKDYGHVVDYVNYQFYTDKVRSPRG------------ 193 (245)
Q Consensus 133 ~~~ll~~Lr~~l~~~------~~~~~~~v~p~~~~~~~~-~~~~~~~~~~vD~~nyd~~~~~~~~~~~------------ 193 (245)
|+.||++||++|++. ++++++++++.......+ ...+.+.+|+|..|+||+||+|...+++
T Consensus 154 ~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 154 FTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999885 377787766543221111 2222444444445559999987422211
Q ss_pred ---hH--HHHHHHHhCCCCCCeeeeeccCCCccc
Q 046094 194 ---YL--EAFKLRVEQFGREKMVPSYEVNGRGIQ 222 (245)
Q Consensus 194 ---~~--~~~~~~~~g~~~~Kl~lGvp~yG~~~~ 222 (245)
.. .+..++.+|+||+||+||+|+|||+|+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~ 267 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWT 267 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccC
Confidence 11 144678899999999999999999985
No 4
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.4e-42 Score=312.27 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=153.8
Q ss_pred ccCcCCCCcccCCCCCc--eeEEEEceeeecCCCC-CccCCccCcccCCC--CCHHHHHHHHHhCCCceEEEEEcCCCCC
Q 046094 7 ATGIPVKFDSMPIKDGI--DFHFILSFAIDVDPSG-NYQNGKFSPYWAET--LTPDSVAAVKARHPNVKALASLSGWSLG 81 (245)
Q Consensus 7 ~~~~~~~~~~~~i~~~~--~THiiy~fa~~~~~~g-~~~~~~~~~~~~d~--~~~~~~~~lk~~~~~~kvllsiGG~~~~ 81 (245)
.|.+..+|+|++||+.+ ||||+|+|+ .+++++ .+. ... .+.+. ..++++..||++||++|||+|||||+.+
T Consensus 12 ~r~~~~~~~~~~i~~~~~~~THl~yaf~-~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~lk~~~p~lKvllSiGGw~~~ 87 (413)
T cd02873 12 LREGLAKMSLEDLEPALQFCTHLVYGYA-GIDADTYKIK--SLN-EDLDLDKSHYRAITSLKRKYPHLKVLLSVGGDRDT 87 (413)
T ss_pred cCCCCCeeCHHHcCCccccCCeEEEEEE-EEeCCCCEEE--ecC-cccchhhhHHHHHHHHHhhCCCCeEEEeecCCCCC
Confidence 45566799999999976 999999999 477653 221 111 12222 4578899999999999999999999853
Q ss_pred -----CCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC----------------------------
Q 046094 82 -----SKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR---------------------------- 126 (245)
Q Consensus 82 -----~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~---------------------------- 126 (245)
+..|+ ++++++|++||+++ ++|+++|+||||||||| ||..
T Consensus 88 ~~~~~s~~fs~~~~~~~~R~~Fi~si----v~~l~~~~fDGidiDWE-yP~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 162 (413)
T cd02873 88 DEEGENEKYLLLLESSESRNAFINSA----HSLLKTYGFDGLDLAWQ-FPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDE 162 (413)
T ss_pred CCcccchhhHHHhCCHHHHHHHHHHH----HHHHHHcCCCCeEeeee-CCCCcccccccccchhhhhhhcccccccccCC
Confidence 33566 48899999995554 59999999999999999 9963
Q ss_pred --CCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcceEEE---EccCCCCCC-------CCcc-
Q 046094 127 --NASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVN---YQFYTDKVR-------SPRG- 193 (245)
Q Consensus 127 --~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~n---yd~~~~~~~-------~~~~- 193 (245)
..|++||+.||+|||++|++.+++++++++|..... .++++ +++.++|||+| ||+|++|.. +|-.
T Consensus 163 ~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~~-~~~d~-~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~~ 240 (413)
T cd02873 163 KAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNST-WYFDV-PAIANNVDFVNLATFDFLTPERNPEEADYTAPIYE 240 (413)
T ss_pred CChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchhc-cccCH-HHHhhcCCEEEEEEecccCCCCCCCccCcCCccCC
Confidence 236789999999999999999998888877654321 12333 55555555555 999987521 1110
Q ss_pred --------hH--HHHHHHHhCCCCCCeeeeeccCCCccc
Q 046094 194 --------YL--EAFKLRVEQFGREKMVPSYEVNGRGIQ 222 (245)
Q Consensus 194 --------~~--~~~~~~~~g~~~~Kl~lGvp~yG~~~~ 222 (245)
.. .+..++.+|+||+||+||+|||||+|+
T Consensus 241 ~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~ 279 (413)
T cd02873 241 LYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWK 279 (413)
T ss_pred CccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeE
Confidence 11 134678899999999999999999996
No 5
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=6.7e-43 Score=310.41 Aligned_cols=207 Identities=22% Similarity=0.340 Sum_probs=157.8
Q ss_pred cCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccC--CCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCcc
Q 046094 8 TGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWA--ETLTPDSVAAVKARHPNVKALASLSGWSLGSKVL 85 (245)
Q Consensus 8 ~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~--d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~ 85 (245)
++++.+|.|++||+++||||||+|+ .++++|++.. .+.|. +...++++..||+++|++||++|||||+.++..|
T Consensus 12 ~~~~~~~~~~~i~~~~~Thv~y~f~-~i~~~g~~~~---~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG~~~~~~~f 87 (362)
T cd02872 12 RPGNGKFVPENIDPFLCTHIIYAFA-GLNPDGNIII---LDEWNDIDLGLYERFNALKEKNPNLKTLLAIGGWNFGSAKF 87 (362)
T ss_pred CCCCCCcChhHCCcccCCEEEEeeE-EECCCCCEEe---cCchhhhhhhHHHHHHHHHhhCCCceEEEEEcCCCCCcchh
Confidence 4556689999999999999999999 5888876532 12233 3356888899999999999999999998766667
Q ss_pred c--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC----CCChhhHHHHHHHHHHHHhcC--CcEEEEEeCC
Q 046094 86 H--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR----NASTPSFAYCIGELITQLKNQ--SVISVATIAP 157 (245)
Q Consensus 86 ~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~----~~d~~~~~~ll~~Lr~~l~~~--~~~~~~~v~p 157 (245)
+ +++++.|++||+++ ++++++|+||||||||| +|.. ..++++|+.||++||++|++. ++++++++++
T Consensus 88 ~~~~~~~~~r~~fi~~i----v~~l~~~~~DGidiDwE-~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av~~ 162 (362)
T cd02872 88 SAMAASPENRKTFIKSA----IAFLRKYGFDGLDLDWE-YPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSA 162 (362)
T ss_pred HHHhCCHHHHHHHHHHH----HHHHHHcCCCCeeeeee-ccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEecC
Confidence 7 47889999995555 59999999999999999 8975 356789999999999999998 8888888776
Q ss_pred CCCCchhhHHH--HHhhcCcceEEEEccCCCCCCCCcc-----------------hHH--HHHHHHhCCCCCCeeeeecc
Q 046094 158 FYSTALPYIKL--YKDYGHVVDYVNYQFYTDKVRSPRG-----------------YLE--AFKLRVEQFGREKMVPSYEV 216 (245)
Q Consensus 158 ~~~~~~~~~~~--~~~~~~~vD~~nyd~~~~~~~~~~~-----------------~~~--~~~~~~~g~~~~Kl~lGvp~ 216 (245)
........++. +.+.+|+|..|+||+|++|...+++ .++ +..++.+|+||+||+||+|+
T Consensus 163 ~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGlp~ 242 (362)
T cd02872 163 GKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVLGIPT 242 (362)
T ss_pred ChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeEecccc
Confidence 54322222233 2444444444558888876321110 011 34667899999999999999
Q ss_pred CCCcccc
Q 046094 217 NGRGIQG 223 (245)
Q Consensus 217 yG~~~~~ 223 (245)
|||.|+.
T Consensus 243 YG~~~~~ 249 (362)
T cd02872 243 YGRSFTL 249 (362)
T ss_pred ccceeee
Confidence 9999974
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-42 Score=299.18 Aligned_cols=215 Identities=19% Similarity=0.269 Sum_probs=159.7
Q ss_pred cccccccCcCC-CCcccCCCCCceeEEEEceeeecCCCCCcc----------------CC-ccCcccCCC--CCHHHHHH
Q 046094 2 MEYIGATGIPV-KFDSMPIKDGIDFHFILSFAIDVDPSGNYQ----------------NG-KFSPYWAET--LTPDSVAA 61 (245)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~i~~~~~THiiy~fa~~~~~~g~~~----------------~~-~~~~~~~d~--~~~~~~~~ 61 (245)
|||.-++.-.. .|.|.+||++.+|||+|||+ ++.++|... .+ ++.| |.++ ..+..+..
T Consensus 42 gYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~-~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp-~~~~~~G~~~~L~~ 119 (441)
T COG3325 42 GYYTSWSQYDRQDYFPGDIPLDQLTHINYAFL-DINSDGKSIESWVADEAALYGVPNIEGVELDP-WSDPLKGHFGALFD 119 (441)
T ss_pred EEecccccCCCcccccccCCHHHhceeeEEEE-EecCCCCccccccccchhhccccCcCceeecc-ccccccchHHHHHH
Confidence 57777775555 99999999999999999999 688888420 01 1222 5542 46889999
Q ss_pred HHHhCCCceEEEEEcCCCCCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC---------CCh
Q 046094 62 VKARHPNVKALASLSGWSLGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN---------AST 130 (245)
Q Consensus 62 lk~~~~~~kvllsiGG~~~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~---------~d~ 130 (245)
+|+++|++|+++|||||+. |..|+ +.+.++|++|++ |.++|+++|+||||||||| ||.+. .++
T Consensus 120 lk~~~~d~k~l~SIGGWs~-S~~F~~~aad~a~re~Fa~----saVe~~r~~~FDGVDIDWE-YP~~~~~~~~~~~~~d~ 193 (441)
T COG3325 120 LKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAK----SAVEFMRTYGFDGVDIDWE-YPGSGGDAGNCGRPKDK 193 (441)
T ss_pred HhhhCCCceEEEeeccccc-CCCcchhhcCHHHHHHHHH----HHHHHHHhcCCCceeeccc-cCCCCCCCCCCCCcccH
Confidence 9999999999999999996 55676 477789999954 5569999999999999999 99853 357
Q ss_pred hhHHHHHHHHHHHHhcCC------cEEEEEeCCCCCCch--hhHHHHHhhcCcceEEEEccCCCCCCCCcchHH------
Q 046094 131 PSFAYCIGELITQLKNQS------VISVATIAPFYSTAL--PYIKLYKDYGHVVDYVNYQFYTDKVRSPRGYLE------ 196 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l~~~~------~~~~~~v~p~~~~~~--~~~~~~~~~~~~vD~~nyd~~~~~~~~~~~~~~------ 196 (245)
+||+.||++||++|++.+ +.++++.+....... ....+ .+++++++.|+|||||.|+...++++.
T Consensus 194 ~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~~~~~~~~-~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~~ 272 (441)
T COG3325 194 ANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLEGLNHAEI-AQYVDYINIMTYDFHGAWNETLGHHAALYGTPK 272 (441)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhhcccHHHH-HHHHhhhheeeeecccccccccccccccccCCC
Confidence 799999999999998743 455555332222211 22233 667777777779999999754433321
Q ss_pred ----------------H----HHHHHhCCCCCCeeeeeccCCCccccch
Q 046094 197 ----------------A----FKLRVEQFGREKMVPSYEVNGRGIQGQA 225 (245)
Q Consensus 197 ----------------~----~~~~~~g~~~~Kl~lGvp~yG~~~~~~~ 225 (245)
. ......++||+||+||+|||||+|.+++
T Consensus 273 d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~ 321 (441)
T COG3325 273 DPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVD 321 (441)
T ss_pred CCccccCCeeEEEEechhHHHHhhhccCCCCceEEeecccccccccccc
Confidence 1 2234567899999999999999998653
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.8e-40 Score=291.43 Aligned_cols=195 Identities=18% Similarity=0.301 Sum_probs=138.1
Q ss_pred CCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCCC-----ccc
Q 046094 12 VKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGSK-----VLH 86 (245)
Q Consensus 12 ~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~-----~~~ 86 (245)
.+|.|++||+++||||+|+|+ .++++|++... .....+..+.++| ++|||+|||||+.++. .|+
T Consensus 16 ~~~~~~~i~~~~~THi~yaf~-~~~~~g~l~~~------~~~~~~~~~~~~k----~lkvllsiGG~~~s~~~~~~~~f~ 84 (345)
T cd02878 16 LNMDVTQIDTSKYTHIHFAFA-NITSDFSVDVS------SVQEQFSDFKKLK----GVKKILSFGGWDFSTSPSTYQIFR 84 (345)
T ss_pred CCCCHhHCCcccCCEEEEEeE-eecCCCeEeec------ccHHHHHHHHhhc----CcEEEEEEeCCCCCCCCccchhhH
Confidence 489999999999999999999 58887765321 1111233333333 4999999999986542 255
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC----------CChhhHHHHHHHHHHHHhcCCcEEEEEe
Q 046094 87 -WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN----------ASTPSFAYCIGELITQLKNQSVISVATI 155 (245)
Q Consensus 87 -~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~----------~d~~~~~~ll~~Lr~~l~~~~~~~~~~v 155 (245)
+.++++|++||++ +++++++|+||||||||| ||... .|+++|+.||++||++|++ ++++++++
T Consensus 85 ~~~~~~~R~~Fi~s----i~~~~~~~~fDGidiDwE-~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-~~~ls~a~ 158 (345)
T cd02878 85 DAVKPANRDTFANN----VVNFVNKYNLDGVDFDWE-YPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-GKSLSIAA 158 (345)
T ss_pred hhcCHHHHHHHHHH----HHHHHHHcCCCceeeccc-CCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc-CcEEEEEc
Confidence 3488999999555 459999999999999999 99642 3678999999999999987 56677765
Q ss_pred CCCCCCchhh-HHHHHhhcCcceEEEEccCCCCCCC-----C---------cc-----hHH-HHHHHHhCCCCCCeeeee
Q 046094 156 APFYSTALPY-IKLYKDYGHVVDYVNYQFYTDKVRS-----P---------RG-----YLE-AFKLRVEQFGREKMVPSY 214 (245)
Q Consensus 156 ~p~~~~~~~~-~~~~~~~~~~vD~~nyd~~~~~~~~-----~---------~~-----~~~-~~~~~~~g~~~~Kl~lGv 214 (245)
++.......| ...+.+.+|++..|+||+||+|... | .+ ... +..++.+|+||+||+||+
T Consensus 159 ~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~Gvp~~KlvlGi 238 (345)
T cd02878 159 PASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAGVPSNKVVVGV 238 (345)
T ss_pred CCChhhhcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcCCCHHHeEEee
Confidence 5543221122 1122444555555559999987421 1 00 011 335678999999999999
Q ss_pred ccCCCcccc
Q 046094 215 EVNGRGIQG 223 (245)
Q Consensus 215 p~yG~~~~~ 223 (245)
|+|||.|+.
T Consensus 239 p~YGr~~~l 247 (345)
T cd02878 239 ASYGRSFKM 247 (345)
T ss_pred ccccceeec
Confidence 999999973
No 8
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=2e-39 Score=285.21 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=156.3
Q ss_pred cccccccCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCC
Q 046094 2 MEYIGATGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLG 81 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~ 81 (245)
+||-+.......|.+++++.++||||+|+|+ .++++|++. +.+.+.+...+..+..+|+++|++|||+|||||+.
T Consensus 4 ~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~-~~~~~g~~~---~~~~~~~~~~~~~~~~l~~~~~~~kvl~svgg~~~- 78 (334)
T smart00636 4 GYFTNWGVYGRNFPVDDIPASKLTHIIYAFA-NIDPDGTVT---IGDEWADIGNFGQLKALKKKNPGLKVLLSIGGWTE- 78 (334)
T ss_pred EEECchhccCCCCChhHCCcccCcEEEEeee-eeCCCCCEe---eCCcchhhhhHHHHHHHHHhCCCCEEEEEEeCCCC-
Confidence 4555554333579999999999999999999 588888653 22223332346678899999999999999999986
Q ss_pred CCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-CChhhHHHHHHHHHHHHhc-----CCcEEEE
Q 046094 82 SKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-ASTPSFAYCIGELITQLKN-----QSVISVA 153 (245)
Q Consensus 82 ~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-~d~~~~~~ll~~Lr~~l~~-----~~~~~~~ 153 (245)
+..|+ +.+++.|++|+++ |++++++|+||||||||| +|... .++++|+.||++||++|++ .++++++
T Consensus 79 s~~f~~~~~~~~~r~~fi~~----i~~~~~~~~~DGidiDwE-~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi 153 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDS----IVSFLKKYGFDGIDIDWE-YPGARGDDRENYTALLKELREALDKEGAEGKGYLLTI 153 (334)
T ss_pred CcchhHHHCCHHHHHHHHHH----HHHHHHHcCCCeEEECCc-CCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEE
Confidence 45565 4778899999555 459999999999999999 88764 5788999999999999986 4788888
Q ss_pred EeCCCCCCchhhHH---HHHhhcCcceEEEEccCCCCCCCCcc--------------hH-H-HHHHHHhCCCCCCeeeee
Q 046094 154 TIAPFYSTALPYIK---LYKDYGHVVDYVNYQFYTDKVRSPRG--------------YL-E-AFKLRVEQFGREKMVPSY 214 (245)
Q Consensus 154 ~v~p~~~~~~~~~~---~~~~~~~~vD~~nyd~~~~~~~~~~~--------------~~-~-~~~~~~~g~~~~Kl~lGv 214 (245)
++++........++ .+.+.+|+|..|+||+|++|...+++ .. . +..++++|+||+||+||+
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGi 233 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGI 233 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEee
Confidence 87765432211112 22444555555559999876432111 11 1 346678999999999999
Q ss_pred ccCCCcccc
Q 046094 215 EVNGRGIQG 223 (245)
Q Consensus 215 p~yG~~~~~ 223 (245)
|+||+.|+.
T Consensus 234 p~YG~~~~~ 242 (334)
T smart00636 234 PFYGRGWTL 242 (334)
T ss_pred ccccCcccc
Confidence 999999974
No 9
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=291.16 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=160.1
Q ss_pred cccccCcCC-CCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCC
Q 046094 4 YIGATGIPV-KFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGS 82 (245)
Q Consensus 4 ~~~~~~~~~-~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~ 82 (245)
++|..+... .+.+.++++++|||+||+|+ .++.+|.+. +.....+..+.+..+.+|.++|++|+|+|||||...+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~TH~vfafa-~~~~~~~~~---~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns 135 (432)
T KOG2806|consen 60 IVGYYPSRIGPETLEDQDPLKCTHLVYAFA-KMKRVGYVV---FCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNS 135 (432)
T ss_pred eEEEeCCCCCCCCccccChhhcCcceEEEe-eecccccEE---eccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCc
Confidence 345555555 89999999999999999999 588887543 2211223456788889999999999999999994346
Q ss_pred Cccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC-CCCChhhHHHHHHHHHHHHhcCC-------cEEE
Q 046094 83 KVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM-RNASTPSFAYCIGELITQLKNQS-------VISV 152 (245)
Q Consensus 83 ~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~-~~~d~~~~~~ll~~Lr~~l~~~~-------~~~~ 152 (245)
..|+ +++++.|+.| |+|+++|+++|+||||||||| ||. ...|+.+|..|++|||++|.++. ++++
T Consensus 136 ~~fs~~~s~~~~r~~F----I~Sii~fl~~~~fDGvDL~We-~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~ 210 (432)
T KOG2806|consen 136 GLFSLVLSDRMIRAKF----IESVVSFIKDYGFDGVDLAWE-WPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLE 210 (432)
T ss_pred cchhhhhcChHHHHHH----HHHHHHHHHHcCCCceeeeeE-CCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceee
Confidence 6677 5999999999 555569999999999999999 997 55678899999999999998753 1344
Q ss_pred EEeCCCCC-CchhhHHHHHhhcCcceEEE---EccCCCCCC--C-----Ccc----------hH--HHHHHHHhCCCCCC
Q 046094 153 ATIAPFYS-TALPYIKLYKDYGHVVDYVN---YQFYTDKVR--S-----PRG----------YL--EAFKLRVEQFGREK 209 (245)
Q Consensus 153 ~~v~p~~~-~~~~~~~~~~~~~~~vD~~n---yd~~~~~~~--~-----~~~----------~~--~~~~~~~~g~~~~K 209 (245)
+++.+... .....+++ .++.+++||+| |||||+|.. . |-. .+ .+.+|+++|.||+|
T Consensus 211 ~~v~~~~~~~~~~~ydi-~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~K 289 (432)
T KOG2806|consen 211 AVVADSKQSAYSDGYDY-ENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSK 289 (432)
T ss_pred eccccCccchhhccCCH-HHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchh
Confidence 44444322 23334566 78888888888 999998753 1 100 11 24577888999999
Q ss_pred eeeeeccCCCccccc
Q 046094 210 MVPSYEVNGRGIQGQ 224 (245)
Q Consensus 210 l~lGvp~yG~~~~~~ 224 (245)
++||+|||||.|+..
T Consensus 290 l~~gip~yg~~w~~~ 304 (432)
T KOG2806|consen 290 LVLALPFYGRSWQLL 304 (432)
T ss_pred eEEEEecceehhhhc
Confidence 999999999999854
No 10
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.5e-38 Score=269.38 Aligned_cols=222 Identities=20% Similarity=0.214 Sum_probs=154.1
Q ss_pred cccccccCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCC
Q 046094 2 MEYIGATGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLG 81 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~ 81 (245)
+||..+... ...++++|.++||||+|+|+ .++++|++. +.+.. ......+..+|+ +++||++|||||..+
T Consensus 3 gyy~~w~~~--~~~~~~~~~~~lThv~~~f~-~i~~~G~l~---~~~~~--~~~~~~~~~~~~--~~~kvl~sigg~~~~ 72 (253)
T cd06545 3 GYLPNYDDL--NALSPTIDFSKLTHINLAFA-NPDANGTLN---ANPVR--SELNSVVNAAHA--HNVKILISLAGGSPP 72 (253)
T ss_pred EEeCCcccc--cCCcccCChhhCCeEEEEEE-EECCCCeEE---ecCcH--HHHHHHHHHHHh--CCCEEEEEEcCCCCC
Confidence 455554432 23689999999999999999 588888653 21111 111223334433 589999999998754
Q ss_pred CCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCC
Q 046094 82 SKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST 161 (245)
Q Consensus 82 ~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~ 161 (245)
.....+.+++.|++|++++ ++++++|+||||||||| +|... +++|..|+++||++|++.++++++++++....
T Consensus 73 ~~~~~~~~~~~r~~fi~~l----v~~~~~~~~DGIdiDwE-~~~~~--~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~~~ 145 (253)
T cd06545 73 EFTAALNDPAKRKALVDKI----INYVVSYNLDGIDVDLE-GPDVT--FGDYLVFIRALYAALKKEGKLLTAAVSSWNGG 145 (253)
T ss_pred cchhhhcCHHHHHHHHHHH----HHHHHHhCCCceeEEee-ccCcc--HhHHHHHHHHHHHHHhhcCcEEEEEccCcccc
Confidence 3222257889999995555 59999999999999999 88754 67999999999999999888888876654322
Q ss_pred chhhHHHHHhhcCcceEEEEccCCCCCC-CCcchH-------HHHHHHHhCC-CCCCeeeeeccCCCccccc---hHHHH
Q 046094 162 ALPYIKLYKDYGHVVDYVNYQFYTDKVR-SPRGYL-------EAFKLRVEQF-GREKMVPSYEVNGRGIQGQ---AFFDA 229 (245)
Q Consensus 162 ~~~~~~~~~~~~~~vD~~nyd~~~~~~~-~~~~~~-------~~~~~~~~g~-~~~Kl~lGvp~yG~~~~~~---~~~~~ 229 (245)
. +.....+.+|++..|+||+||+|.. .|++.+ .+.+|..+|+ |++||+||+|+|||+|+.. +....
T Consensus 146 ~--~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~~~~~~~~~~~ 223 (253)
T cd06545 146 A--VSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNERGLASKDKLVLGLPFYGYGFYYNGIPTIRNK 223 (253)
T ss_pred c--ccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHHcCCCCHHHEEEEeCCccccccCCCHHHHHHH
Confidence 1 2111134444455555888877632 222221 1345678888 9999999999999999743 34555
Q ss_pred HHHHHHcCcccccccC
Q 046094 230 LRLLQANGFEVNGGVL 245 (245)
Q Consensus 230 ~~~~~~~g~~~~Gv~~ 245 (245)
++.+++. +||||+
T Consensus 224 ~~~~~~~---~gG~~~ 236 (253)
T cd06545 224 VAFAKQN---YGGVMI 236 (253)
T ss_pred HHHHHHh---cCeEEE
Confidence 6677776 899995
No 11
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=7.1e-36 Score=252.73 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=150.8
Q ss_pred cccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCC----CCHHHHHHHHHhCCCceEEEEEcCCCCCCCccc--cC
Q 046094 15 DSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAET----LTPDSVAAVKARHPNVKALASLSGWSLGSKVLH--WY 88 (245)
Q Consensus 15 ~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~----~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~--~~ 88 (245)
.+..+++++||||||+|+ .++.+|++.. .+.+.+. ...+.+..+| ++++|||+|||||+.++ |+ .+
T Consensus 21 ~~~~~~~~~~THvi~af~-~i~~~G~l~~---~d~~~~~~~~~~~~~~i~~~~--~~g~KVllSiGG~~~~~--fs~~a~ 92 (256)
T cd06546 21 LLVTEKGIALTHLIVAAL-HINDDGNIHL---NDHPPDHPRFTTLWTELAILQ--SSGVKVMGMLGGAAPGS--FSRLDD 92 (256)
T ss_pred ccccCCCCCCceEEEEEE-EECCCCeEEE---CCCCCCcchhhHHHHHHHHHH--hCCCEEEEEECCCCCCC--cccccC
Confidence 344678899999999999 6888886542 2222221 2344555555 46999999999998543 55 35
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCC------c
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST------A 162 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~------~ 162 (245)
+++.|++| ++++.+++++|+||||||||| +|.. .++|..|+++||+++++..+++.++.++.... .
T Consensus 93 ~~~~r~~f----~~s~~~~~~~~~~DGiDiDwE-~p~~---~~~~~~ll~~Lr~~~~~~~~lT~Ap~~~~~~~g~~~~~~ 164 (256)
T cd06546 93 DDEDFERY----YGQLRDMIRRRGLDGLDLDVE-EPMS---LDGIIRLIDRLRSDFGPDFIITLAPVASALTGGEANLSG 164 (256)
T ss_pred CHHHHHHH----HHHHHHHHHHhCCCceEEeee-cCCC---HhHHHHHHHHHHHHhCCCcEEEECCccccccCCcccccc
Confidence 67788888 556669999999999999999 8854 45999999999999976544433333222111 1
Q ss_pred hhhHHHHHhhcCcceEEEEccCCCCCCCCcchHHHHHHHHhCCCCCCeeeeeccCC---Ccc-ccchHHHHHHHHHHcCc
Q 046094 163 LPYIKLYKDYGHVVDYVNYQFYTDKVRSPRGYLEAFKLRVEQFGREKMVPSYEVNG---RGI-QGQAFFDALRLLQANGF 238 (245)
Q Consensus 163 ~~~~~~~~~~~~~vD~~nyd~~~~~~~~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG---~~~-~~~~~~~~~~~~~~~g~ 238 (245)
..+..+.....+++||+|.|+|+.+.... ...+...++..++|++||++|+|.-. .+| +..++..++..+++...
T Consensus 165 ~~~~~l~~~~~~~~Df~nvQfYn~~g~~~-~~~~~~~~~~~~~~~~Kv~iGlpa~~~a~~Gyv~~~~l~~~v~~l~~~~~ 243 (256)
T cd06546 165 FDYRELEQARGDKIDFYNAQFYNGFGSMS-SPSDYDAIVAQGWDPERIVIGLLTNPDNGQGFVPFDTLSSTLSTLRQRYP 243 (256)
T ss_pred cCHHHHHHhhCCceeEEEEcCcCCCCCcc-CHHHHHHHHHcCCCcccEEEEEeccCCcCCCccCHHHHHHHHHHHHHhCC
Confidence 23445556677899999999998642211 12233455667999999999999853 334 36677899999987665
Q ss_pred ccccccC
Q 046094 239 EVNGGVL 245 (245)
Q Consensus 239 ~~~Gv~~ 245 (245)
++||||+
T Consensus 244 ~~gGvm~ 250 (256)
T cd06546 244 NFGGVMG 250 (256)
T ss_pred CCceEEE
Confidence 8999996
No 12
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=3.7e-37 Score=269.10 Aligned_cols=222 Identities=15% Similarity=0.159 Sum_probs=155.3
Q ss_pred cccccccCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEE--EEEcCCC
Q 046094 2 MEYIGATGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKAL--ASLSGWS 79 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvl--lsiGG~~ 79 (245)
++|..+. ...|.+.+++.++||||+|+|+ .++++|... .+.+ ..+ .....+..+|+++|++||+ +++|||+
T Consensus 7 ~y~~~W~--~~~~~~~~~~~~~lthv~~~f~-~i~~~g~~~--~~~~-~~~-~~~~~~~~lk~~~~~lkvlp~i~~gg~~ 79 (318)
T cd02876 7 GYVTPWN--SHGYDVAKKFAAKFTHVSPVWL-QIKRKGNKF--VIEG-THD-IDKGWIEEVRKANKNIKILPRVLFEGWS 79 (318)
T ss_pred EEEcCcC--ccchHHHHHHhccCCEecceEE-EEecCCCee--eeec-Ccc-hhhHHHHHHHhhCCCcEEEeEEEECCCC
Confidence 4444442 3468899999999999999999 578776421 1111 111 1234678899999999999 7789997
Q ss_pred CCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEE-eccCCCCC---CChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 80 LGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDID-YEKFPMRN---ASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 80 ~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiD-wE~~p~~~---~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
.+ .|+ +++++.|++||+ ++++++++||||||||| || ||... .++++|+.|++|||++|++.++.+++
T Consensus 80 ~~--~f~~~~~~~~~R~~fi~----s~~~~~~~~~~DGidiD~we-~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~~ 152 (318)
T cd02876 80 YQ--DLQSLLNDEQEREKLIK----LLVTTAKKNHFDGIVLEVWS-QLAAYGVPDKRKELIQLVIHLGETLHSANLKLIL 152 (318)
T ss_pred HH--HHHHHHcCHHHHHHHHH----HHHHHHHHcCCCcEEEechh-hhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 43 355 589999999955 45599999999999999 99 88753 47889999999999999998988888
Q ss_pred EeCCCCCC-----chhhHHH--HHhhcCcceEEEEccCCCCC---CCCcchHH--HHHHHHhC-CCCCCeeeeeccCCCc
Q 046094 154 TIAPFYST-----ALPYIKL--YKDYGHVVDYVNYQFYTDKV---RSPRGYLE--AFKLRVEQ-FGREKMVPSYEVNGRG 220 (245)
Q Consensus 154 ~v~p~~~~-----~~~~~~~--~~~~~~~vD~~nyd~~~~~~---~~~~~~~~--~~~~~~~g-~~~~Kl~lGvp~yG~~ 220 (245)
+++|.... ....+++ +.+.+|+|..|+||+|++.. .+|-.... +.+++..| +||+||+||+|+|||.
T Consensus 153 ~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~~~~vp~~KlvlGip~YG~~ 232 (318)
T cd02876 153 VIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLPESGKKRAKILLGLNFYGND 232 (318)
T ss_pred EEcCccccccccccccccCHHHHHhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHhcCCCCHHHeEEeccccccc
Confidence 88765432 1111233 24445555555588887511 12222222 33556666 9999999999999999
Q ss_pred cccch------HHHHHHHHHHcC
Q 046094 221 IQGQA------FFDALRLLQANG 237 (245)
Q Consensus 221 ~~~~~------~~~~~~~~~~~g 237 (245)
|+... ..+.++.+++.+
T Consensus 233 w~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
T cd02876 233 YTLPGGGGAITGSEYLKLLKSNK 255 (318)
T ss_pred cccCCCCceeehHHHHHHHHhcC
Confidence 97542 345555555544
No 13
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.9e-36 Score=263.98 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=155.2
Q ss_pred CcccccccCcCC-CCcccCCCCCceeEEEEceeeecCCCCCccCCc-c-CcccCCCCCHHHHHHHHHhCCCceEEEEEcC
Q 046094 1 MMEYIGATGIPV-KFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGK-F-SPYWAETLTPDSVAAVKARHPNVKALASLSG 77 (245)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~-~-~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG 77 (245)
|+||...+.... .|.+++|+.+.||||+|+|+ .++.++...... . .....+....+.++.+|+++|++|||+||||
T Consensus 4 v~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsigg 82 (343)
T PF00704_consen 4 VGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFA-GIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSIGG 82 (343)
T ss_dssp EEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEE-EEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEECCcCCCCCCCCCHHHCCcccCCEEEEEee-eecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEecc
Confidence 456666654333 59999999999999999999 578777542110 0 0001222457788899999999999999999
Q ss_pred CCCCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC---CChhhHHHHHHHHHHHHhcC-----
Q 046094 78 WSLGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN---ASTPSFAYCIGELITQLKNQ----- 147 (245)
Q Consensus 78 ~~~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~---~d~~~~~~ll~~Lr~~l~~~----- 147 (245)
|..+...|. ..+++.|++|++++ ++++++|+||||||||| +|... +++++|..||++||++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~r~~f~~~i----~~~l~~y~~DGidiD~e-~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 157 (343)
T PF00704_consen 83 WGMSSDGFSQLLSNPAKRQNFINNI----VSFLKKYGFDGIDIDWE-YPSSSGDPQDKDNYTAFLKELRKALKRANRSGK 157 (343)
T ss_dssp TTSSHHHHHHHHHSHHHHHHHHHHH----HHHHHHHT-SEEEEEES-STTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccHHHHHHHHHhh----hhhhcccCcceeeeeee-eccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 976442555 36788999995555 59999999999999999 88764 57889999999999999984
Q ss_pred CcEEEEEeCCCCCCchhhHHHHHhhcCcceEEE---EccCCCCCC-----CCc----------chH-HHHHHHHhCCCCC
Q 046094 148 SVISVATIAPFYSTALPYIKLYKDYGHVVDYVN---YQFYTDKVR-----SPR----------GYL-EAFKLRVEQFGRE 208 (245)
Q Consensus 148 ~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~n---yd~~~~~~~-----~~~----------~~~-~~~~~~~~g~~~~ 208 (245)
++++++++++.... ....+. +++.++||+++ ||+|++|.. +|- ... .+..++..|+||+
T Consensus 158 ~~~ls~a~p~~~~~-~~~~~~-~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p~~ 235 (343)
T PF00704_consen 158 GYILSVAVPPSPDY-YDKYDY-KELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVPPS 235 (343)
T ss_dssp TSEEEEEEECSHHH-HTTHHH-HHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTSTGG
T ss_pred eeEEeecccccccc-cccccc-ccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhccccCChh
Confidence 88888887665442 222334 77777788777 666675432 110 011 2456778899999
Q ss_pred CeeeeeccCCCcccc
Q 046094 209 KMVPSYEVNGRGIQG 223 (245)
Q Consensus 209 Kl~lGvp~yG~~~~~ 223 (245)
||+||+|+||+.|+.
T Consensus 236 Kl~lglp~yg~~~~~ 250 (343)
T PF00704_consen 236 KLVLGLPFYGRSWTL 250 (343)
T ss_dssp GEEEEEESEEEEEES
T ss_pred heeecCCccccccee
Confidence 999999999999863
No 14
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=8.6e-33 Score=227.53 Aligned_cols=200 Identities=21% Similarity=0.309 Sum_probs=151.5
Q ss_pred cccccccCcCCCCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCC
Q 046094 2 MEYIGATGIPVKFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLG 81 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~ 81 (245)
+||.......... +..++.+.||||+|+|+ .++++|.... ............++.+|+++|++||++|||||..+
T Consensus 3 ~y~~~w~~~~~~~-~~~~~~~~~thvi~~f~-~v~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~ 77 (210)
T cd00598 3 CYYDGWSSGRGPD-PTDIPLSLCTHIIYAFA-EISSDGSLNL---FGDKSEEPLKGALEELASKKPGLKVLISIGGWTDS 77 (210)
T ss_pred EEEccccccCCCC-hhhCCcccCCEEEEeeE-EECCCCCEec---ccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCC
Confidence 3444444433322 88999999999999999 5887775321 00011223467788999888999999999999865
Q ss_pred CCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCC--ChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 82 SKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNA--STPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 82 ~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~--d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
.....+.+++.|++|+++ +++++++|+||||||||| +|.... ++++|..|+++||++|++.++++++++++..
T Consensus 78 ~~~~~~~~~~~~~~f~~~----~~~~v~~~~~DGidiD~E-~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~ 152 (210)
T cd00598 78 SPFTLASDPASRAAFANS----LVSFLKTYGFDGVDIDWE-YPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASY 152 (210)
T ss_pred CCchhhcCHHHHHHHHHH----HHHHHHHcCCCceEEeee-CCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCCh
Confidence 432125778889999555 459999999999999999 887654 5789999999999999998888888866654
Q ss_pred CCchhhHHHHHhhcCcceEEEEccCCCCCCCCcchHHHHHHHHhCCCCCCeeeeeccCCCccccchHHHHHHHHHHcCcc
Q 046094 160 STALPYIKLYKDYGHVVDYVNYQFYTDKVRSPRGYLEAFKLRVEQFGREKMVPSYEVNGRGIQGQAFFDALRLLQANGFE 239 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~vD~~nyd~~~~~~~~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG~~~~~~~~~~~~~~~~~~g~~ 239 (245)
......++. +++.+++||++.|.|+ |+||+|+| ++...++.+++.+
T Consensus 153 ~~~~~~~~~-~~l~~~vD~v~vm~Yd------------------------l~~g~~~~-------s~~~k~~~~~~~~-- 198 (210)
T cd00598 153 FDLGYAYDV-PAIGDYVDFVNVMTYD------------------------LVLGVPFY-------SLGAKAKYAKQKG-- 198 (210)
T ss_pred HHhhccCCH-HHHHhhCCEEEEeeec------------------------ccccchhh-------hHHHHHHHHHHcC--
Confidence 322111334 7888999999988887 99999999 7788888888886
Q ss_pred cccccC
Q 046094 240 VNGGVL 245 (245)
Q Consensus 240 ~~Gv~~ 245 (245)
+||||+
T Consensus 199 ~gGv~~ 204 (210)
T cd00598 199 LGGVMI 204 (210)
T ss_pred CceEEE
Confidence 899985
No 15
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=3.2e-32 Score=237.06 Aligned_cols=216 Identities=18% Similarity=0.248 Sum_probs=148.1
Q ss_pred cCCCCCceeEEEEceeeecCCCCCccCCcc----Cc-ccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCC
Q 046094 17 MPIKDGIDFHFILSFAIDVDPSGNYQNGKF----SP-YWAETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPR 91 (245)
Q Consensus 17 ~~i~~~~~THiiy~fa~~~~~~g~~~~~~~----~~-~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~ 91 (245)
.+..++.||||+|+|+ .++.+++... .+ .+ ........+.++.+|++ ++|||+|||||... ..+.+++
T Consensus 21 ~~~~~~~yt~i~~AF~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVllSiGG~~~~---~~~~~~~ 93 (312)
T cd02871 21 LDDVPSKYNVINVAFA-EPTSDGGGEV-TFNNGSSPGGYSPAEFKADIKALQAK--GKKVLISIGGANGH---VDLNHTA 93 (312)
T ss_pred cccCCCCCCEEEEcce-eecCCCceeE-eecccCCcccCChHHHHHHHHHHHHC--CCEEEEEEeCCCCc---cccCCHH
Confidence 3445599999999999 4666553210 00 00 01122345666777765 89999999999742 2355778
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC----CChhhHHHHHHHHHHHHhcCCcEEEEE-eCCCCC------
Q 046094 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN----ASTPSFAYCIGELITQLKNQSVISVAT-IAPFYS------ 160 (245)
Q Consensus 92 ~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~----~d~~~~~~ll~~Lr~~l~~~~~~~~~~-v~p~~~------ 160 (245)
.|++|+ ++|++++++|+||||||||| +|... .++++|..||++||+++++ +++++++ .+|...
T Consensus 94 ~~~~fa----~sl~~~~~~~g~DGiDiD~E-~~~~~~~~~~~~~~~~~~lk~lr~~~~~-~~~lT~AP~~~~~~~~~~~~ 167 (312)
T cd02871 94 QEDNFV----DSIVAIIKEYGFDGLDIDLE-SGSNPLNATPVITNLISALKQLKDHYGP-NFILTMAPETPYVQGGYAAY 167 (312)
T ss_pred HHHHHH----HHHHHHHHHhCCCeEEEecc-cCCccCCcHHHHHHHHHHHHHHHHHcCC-CeEEEECCCcccccCccccc
Confidence 888884 55569999999999999999 88654 2567999999999999976 4555553 222222
Q ss_pred --CchhhHHHHHhhcCcceEEEEccCCCCCC-C------CcchHH----HHHHHHhC-----------CCCCCeeeeecc
Q 046094 161 --TALPYIKLYKDYGHVVDYVNYQFYTDKVR-S------PRGYLE----AFKLRVEQ-----------FGREKMVPSYEV 216 (245)
Q Consensus 161 --~~~~~~~~~~~~~~~vD~~nyd~~~~~~~-~------~~~~~~----~~~~~~~g-----------~~~~Kl~lGvp~ 216 (245)
....|..++.++.+++||+|+|+|+.+.. . .....+ +...+.++ +|++||++|+|.
T Consensus 168 ~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa 247 (312)
T cd02871 168 GGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPA 247 (312)
T ss_pred ccCCcchhHHHHHhhhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCCCccCCcccccCChhhEEEeccC
Confidence 11235556688899999999999976421 1 111122 12344555 899999999999
Q ss_pred CC----Cccc-cchHHHHHHHHHHcC-----------cccccccC
Q 046094 217 NG----RGIQ-GQAFFDALRLLQANG-----------FEVNGGVL 245 (245)
Q Consensus 217 yG----~~~~-~~~~~~~~~~~~~~g-----------~~~~Gv~~ 245 (245)
.. .+|. ...+..++..+++.+ .++||||+
T Consensus 248 ~~~aa~~gyv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~ 292 (312)
T cd02871 248 SPSAAGGGYVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMT 292 (312)
T ss_pred CCCccCCCccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEE
Confidence 73 4554 667789999998874 47999995
No 16
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.97 E-value=1.4e-30 Score=227.17 Aligned_cols=201 Identities=20% Similarity=0.252 Sum_probs=140.9
Q ss_pred CCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCC---CCCccc--cCCCCchH
Q 046094 20 KDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSL---GSKVLH--WYNPRNPQ 94 (245)
Q Consensus 20 ~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~---~~~~~~--~~~~~~r~ 94 (245)
-.+.+|||+.... .++++|++. + .. ..+.+..+|++ ++||+++||||.. ++..++ +++++.|+
T Consensus 22 ~~~~lt~v~p~w~-~~~~~g~~~-----~-~~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~ 89 (313)
T cd02874 22 NAPYLTYIAPFWY-GVDADGTLT-----G-LP---DERLIEAAKRR--GVKPLLVITNLTNGNFDSELAHAVLSNPEARQ 89 (313)
T ss_pred hcCCCCEEEEEEE-EEcCCCCCC-----C-CC---CHHHHHHHHHC--CCeEEEEEecCCCCCCCHHHHHHHhcCHHHHH
Confidence 3567899998766 578777532 1 11 13444555554 8999999999872 333344 47889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCc------hhh-HH
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTA------LPY-IK 167 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~------~~~-~~ 167 (245)
+|+++ |++++++|+||||||||| ++. .+++++|+.||++||++|++.+++++++++|..... ..+ +.
T Consensus 90 ~fi~~----iv~~l~~~~~DGidiDwE-~~~-~~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~~~~~~~~~~~~~~~~~ 163 (313)
T cd02874 90 RLINN----ILALAKKYGYDGVNIDFE-NVP-PEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAYDYA 163 (313)
T ss_pred HHHHH----HHHHHHHhCCCcEEEecc-cCC-HHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccccccCHH
Confidence 99555 459999999999999999 765 457889999999999999988888887776654211 112 22
Q ss_pred HHHhhcCcceEEEEccCCCCCC----CCcch-HHHHHHHHhCCCCCCeeeeeccCCCccccc----------hHHHHHHH
Q 046094 168 LYKDYGHVVDYVNYQFYTDKVR----SPRGY-LEAFKLRVEQFGREKMVPSYEVNGRGIQGQ----------AFFDALRL 232 (245)
Q Consensus 168 ~~~~~~~~vD~~nyd~~~~~~~----~~~~~-~~~~~~~~~g~~~~Kl~lGvp~yG~~~~~~----------~~~~~~~~ 232 (245)
.+.+.+|++..|+||+|+.|.. +|... .....++.+|+|++||+||+|+|||.|+.. +..++|..
T Consensus 164 ~l~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~~gvp~~KlvlGip~YG~~w~~~~~~~~~~~~~~~~~~~~~ 243 (313)
T cd02874 164 AIGKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAVTQIPREKILLGIPLYGYDWTLPYKKGGKASTISPQQAINL 243 (313)
T ss_pred HHHhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHHhcCCHHHEEEeecccccccccCCCCCcCccccCHHHHHHH
Confidence 2245555555556999886532 11111 224567779999999999999999999743 23567777
Q ss_pred HHHcCc
Q 046094 233 LQANGF 238 (245)
Q Consensus 233 ~~~~g~ 238 (245)
+++.|+
T Consensus 244 ~~~~~~ 249 (313)
T cd02874 244 AKRYGA 249 (313)
T ss_pred HHHcCC
Confidence 777664
No 17
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.96 E-value=3.7e-28 Score=210.36 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=141.1
Q ss_pred CCceeEEEEceeeecC-CCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccc--cCCCCchHHHH
Q 046094 21 DGIDFHFILSFAIDVD-PSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLH--WYNPRNPQIWI 97 (245)
Q Consensus 21 ~~~~THiiy~fa~~~~-~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~--~~~~~~r~~fi 97 (245)
...+|||+-... .++ ++|.+. .. .|......++.+|+++|.++++.+++|+..++..|+ +++++.|++||
T Consensus 21 ~~~l~~vsP~W~-~~~~~~g~l~-----~~-~d~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~R~~fi 93 (298)
T cd06549 21 APRLDWLVPEWL-NLTGPEGRID-----VF-VDPQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFI 93 (298)
T ss_pred hccCCEEeceeE-EEecCCCcee-----cc-CChHHHHHHHHHHcCCceeEEEEecCCCCCCHHHHHHHhcCHHHHHHHH
Confidence 446789885544 344 566543 11 122223345677777778899999988765444455 58999999995
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcce
Q 046094 98 SNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVD 177 (245)
Q Consensus 98 ~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD 177 (245)
+ +|++++++|+||||||||| ++. ..++++|+.||++||++|++.++.+++++++... ...+..+ .+.+|++.
T Consensus 94 ~----~iv~~~~~~~~dGidiD~E-~~~-~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~~-~~d~~~l-~~~~D~v~ 165 (298)
T cd06549 94 A----NIAAYLERNQADGIVLDFE-ELP-ADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEA-DWNLKAL-ARNADKLI 165 (298)
T ss_pred H----HHHHHHHHhCCCCEEEecC-CCC-hhHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCC-CCCHHHH-HHhCCEEE
Confidence 5 5559999999999999999 764 4578999999999999999989988888776543 2233333 66677777
Q ss_pred EEEEccCCCCC-CCCc---ch-HHHHHHHHhCCCCCCeeeeeccCCCccccc------hHHHHHHHHHHcC
Q 046094 178 YVNYQFYTDKV-RSPR---GY-LEAFKLRVEQFGREKMVPSYEVNGRGIQGQ------AFFDALRLLQANG 237 (245)
Q Consensus 178 ~~nyd~~~~~~-~~~~---~~-~~~~~~~~~g~~~~Kl~lGvp~yG~~~~~~------~~~~~~~~~~~~g 237 (245)
.|+||+|+.+. ..|. .+ ...+.+..+++|++||+||+|+|||.|+.. +..+++..+++.+
T Consensus 166 lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG~~w~~~~~~~~~~~~~~~~~~~~~~ 236 (298)
T cd06549 166 LMAYDEHYQGGAPGPIASQDWFESNLAQAVKKLPPEKLIVALGSYGYDWTKGGNTKAISSEAAWLLAAHAS 236 (298)
T ss_pred EEEeccCCCCCCCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccCccccCCCCCcccCHHHHHHHHHHcC
Confidence 77799997542 2221 12 224566678999999999999999999742 2244555455544
No 18
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.96 E-value=4.4e-28 Score=214.53 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC--CCChhhHHHHHHHHHH
Q 046094 66 HPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR--NASTPSFAYCIGELIT 142 (245)
Q Consensus 66 ~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~--~~d~~~~~~ll~~Lr~ 142 (245)
..++||+++ +++. +. +.++++|++||++ +++++++||||||||||| ||.. ..++++|+.|+++||+
T Consensus 75 ~~~v~v~~~-~~~~-----~~~l~~~~~R~~fi~s----iv~~~~~~gfDGIdIDwE-~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 75 SKGVRLVLK-GDVP-----LEQISNPTYRTQWIQQ----KVELAKSQFMDGINIDIE-QPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HcCCEEEEE-CccC-----HHHcCCHHHHHHHHHH----HHHHHHHhCCCeEEEccc-CCCCCCcchHHHHHHHHHHHHH
Confidence 349999987 2222 22 5789999999555 559999999999999999 9974 3578899999999999
Q ss_pred HHhcC--CcEEEEEeCCCCCCc-hhhHHH--HHhhcCcceEEEEccCCC-CC----C---CCcchH--HHHHHHHhCCCC
Q 046094 143 QLKNQ--SVISVATIAPFYSTA-LPYIKL--YKDYGHVVDYVNYQFYTD-KV----R---SPRGYL--EAFKLRVEQFGR 207 (245)
Q Consensus 143 ~l~~~--~~~~~~~v~p~~~~~-~~~~~~--~~~~~~~vD~~nyd~~~~-~~----~---~~~~~~--~~~~~~~~g~~~ 207 (245)
+|++. +++++++++...... ...++. +.+.+|++..|+||+|+. |. + +|.... .+..++..|+||
T Consensus 144 ~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~~~gvp~ 223 (358)
T cd02875 144 AFKKENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFTKLGIDP 223 (358)
T ss_pred HHhhcCCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHHHcCCCH
Confidence 99986 567777655332211 111222 244555555555999874 43 1 121112 145778899999
Q ss_pred CCeeeeeccCCCccc
Q 046094 208 EKMVPSYEVNGRGIQ 222 (245)
Q Consensus 208 ~Kl~lGvp~yG~~~~ 222 (245)
+||+||+|+|||+|+
T Consensus 224 ~KLvLGip~YGr~w~ 238 (358)
T cd02875 224 KKLVMGLPWYGYDYP 238 (358)
T ss_pred HHeEEEeCCCCCcee
Confidence 999999999999996
No 19
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.93 E-value=8.8e-26 Score=191.55 Aligned_cols=209 Identities=20% Similarity=0.220 Sum_probs=144.9
Q ss_pred CCcccCCCCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCcc-ccCCCC
Q 046094 13 KFDSMPIKDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGSKVL-HWYNPR 91 (245)
Q Consensus 13 ~~~~~~i~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~-~~~~~~ 91 (245)
.-.+.++|. ...+|+. |+..+..++.. + . . +..+...+.++.+|++ ++||++|||||..+. .+ ...+++
T Consensus 18 ~~~l~~~pd-s~D~v~l-f~~~~~~~~~~--~-~-~-~~~~~~~~~i~~l~~k--G~KVl~sigg~~~~~-~~~~~~~~~ 87 (255)
T cd06542 18 QESLLNLPD-SVDMVSL-FAANINLDAAT--A-V-Q-FLLTNKETYIRPLQAK--GTKVLLSILGNHLGA-GFANNLSDA 87 (255)
T ss_pred ccccccCCC-cceEEEE-cccccCccccc--c-h-h-hhhHHHHHHHHHHhhC--CCEEEEEECCCCCCC-CccccCCHH
Confidence 456667774 5677776 44233333210 0 0 1 1122345666777665 999999999998643 34 345667
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC------CChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhh
Q 046094 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN------ASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPY 165 (245)
Q Consensus 92 ~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~------~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~ 165 (245)
.|++| +++|++++++||||||||||| +|... .++++|..|+++||+++++.+++++++..|.....
T Consensus 88 ~~~~f----a~~l~~~v~~yglDGiDiD~E-~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~~~~~~~~~--- 159 (255)
T cd06542 88 AAKAY----AKAIVDTVDKYGLDGVDFDDE-YSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTIDGYGQALSN--- 159 (255)
T ss_pred HHHHH----HHHHHHHHHHhCCCceEEeee-ecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEEecCCchhc---
Confidence 78888 555569999999999999999 77642 26779999999999999886777777655544321
Q ss_pred HHHHHhhcCcceEEEEccCCCCCCCCcchHHHHHHHHhCCCCCCeeeeeccCCCcc--ccchHHHHHHHHHHcCcccccc
Q 046094 166 IKLYKDYGHVVDYVNYQFYTDKVRSPRGYLEAFKLRVEQFGREKMVPSYEVNGRGI--QGQAFFDALRLLQANGFEVNGG 243 (245)
Q Consensus 166 ~~~~~~~~~~vD~~nyd~~~~~~~~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG~~~--~~~~~~~~~~~~~~~g~~~~Gv 243 (245)
+. +++.+++||+++|+|+.|...... .......|+|++|+++|+++++... +...+.+.++..++.+ .+||+
T Consensus 160 -~~-~~~~~~vDyv~~~~y~~~~~~~~~---~~~~~~~g~~~~k~i~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~gG~ 233 (255)
T cd06542 160 -DG-EEVSPYVDYVIYQYYGSSSSSTQR---NWNTNSPKIPPEKMVYTESFEEENGGNSGSSAEQYARWTPAKG-GKGGI 233 (255)
T ss_pred -CH-HHHHHhCCEEEeeccCCCCccCCc---ccccccCCCCHHHceeeeeeecccCCCcchhHHHHHhcCcccC-ceEEE
Confidence 23 788999999999999987544322 1233467999999999999998654 2344456666666666 78999
Q ss_pred cC
Q 046094 244 VL 245 (245)
Q Consensus 244 ~~ 245 (245)
|+
T Consensus 234 ~~ 235 (255)
T cd06542 234 GT 235 (255)
T ss_pred EE
Confidence 85
No 20
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.92 E-value=3e-24 Score=183.42 Aligned_cols=209 Identities=14% Similarity=0.145 Sum_probs=134.7
Q ss_pred CceeEEEEceeeecCCCCCccCCccCcccCC------CCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHH
Q 046094 22 GIDFHFILSFAIDVDPSGNYQNGKFSPYWAE------TLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQI 95 (245)
Q Consensus 22 ~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d------~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~ 95 (245)
..++-|+.+|.-... ++......|...-.. +.+.+.++.++++ ++|||||||||.. + ++..+++.|++
T Consensus 23 ~~~dii~i~Fl~~~~-~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIGG~~~-~--~~~~s~~~a~~ 96 (280)
T cd02877 23 GNYDIVNISFLNVFG-SGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIGGAGG-S--YSLSSDADAKD 96 (280)
T ss_pred CCccEEEEEeEcccC-CCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEccCCCC-C--cCCCCHHHHHH
Confidence 357888999983233 322212223221111 1345556666554 9999999999985 3 33467888999
Q ss_pred HHHHHHHHH--------HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcC---CcEEEEEeCCCCCCchh
Q 046094 96 WISNAFSSL--------KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQ---SVISVATIAPFYSTALP 164 (245)
Q Consensus 96 fi~~~~~sl--------~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~---~~~~~~~v~p~~~~~~~ 164 (245)
|++++.+.. .+.+.+++||||||||| +|.. .+|..|+++||+.+++. .+++++ +|.......
T Consensus 97 Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E-~~~~----~~~~~l~~~LR~~~~~~~~~~~~LTa--APq~~~~d~ 169 (280)
T cd02877 97 FADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIE-HGSP----ENYDALAKRLRSLFASDPSKKYYLTA--APQCPYPDA 169 (280)
T ss_pred HHHHHHHHhCCccccccccccccccccceEEecc-cCCc----cCHHHHHHHHHHHhhcccCCceEEEe--ccccCCcch
Confidence 966655221 12334678999999999 7875 48999999999999763 355555 344432222
Q ss_pred hHHHHHhhc-CcceEEEEccCCCCCCC-----CcchHHHHHHHHhCCCC---CCeeeeeccCC----Ccc-ccchHHHHH
Q 046094 165 YIKLYKDYG-HVVDYVNYQFYTDKVRS-----PRGYLEAFKLRVEQFGR---EKMVPSYEVNG----RGI-QGQAFFDAL 230 (245)
Q Consensus 165 ~~~~~~~~~-~~vD~~nyd~~~~~~~~-----~~~~~~~~~~~~~g~~~---~Kl~lGvp~yG----~~~-~~~~~~~~~ 230 (245)
+.. ..+. +++||++.|+|+.+.-. .......+..+...+++ .||+||+|... .+| .+..+..++
T Consensus 170 ~~~--~~i~~~~~D~i~vqfYn~~~c~~~~~~~~~~~~~~~~w~~~~~~~~~~kv~lGlpas~~aa~~Gyv~p~~l~~~v 247 (280)
T cd02877 170 SLG--DAIATGLFDFIFVQFYNNPCCSYASGNASGFNFNWDTWTSWAKATSNAKVFLGLPASPEAAGSGYVDPSELASLV 247 (280)
T ss_pred hHH--HHHccCccCEEEEEEecCccccccccccchhhhHHHHHHHhcccCCCceEEEecccCCCCCCCCccCHHHHHHHH
Confidence 222 3333 59999999999875321 11111223333344665 89999999884 344 467778899
Q ss_pred HHHHHcCcccccccC
Q 046094 231 RLLQANGFEVNGGVL 245 (245)
Q Consensus 231 ~~~~~~g~~~~Gv~~ 245 (245)
..++....++||||+
T Consensus 248 ~~~~~~~~~fGGvM~ 262 (280)
T cd02877 248 LPVKQKSPNFGGVML 262 (280)
T ss_pred HHHhhcCCCCcEEEE
Confidence 999987778999996
No 21
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.80 E-value=1.1e-18 Score=150.29 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=99.0
Q ss_pred CCCceeEEEEceeeecCCCCCccCCccCcccCCCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHH
Q 046094 20 KDGIDFHFILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISN 99 (245)
Q Consensus 20 ~~~~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~ 99 (245)
....|+||+++|+. ...+|++.-+...+...+....+.+..+|++ ++||+||+|||..+ .++ .+..+|++|++
T Consensus 22 ~~~g~~~v~lAFi~-~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g~--~~~-~~~~~~~~~~~- 94 (294)
T cd06543 22 AATGVKAFTLAFIV-ASGGCKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASGT--PLA-TSCTSADQLAA- 94 (294)
T ss_pred HHcCCCEEEEEEEE-cCCCCcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCCC--ccc-cCcccHHHHHH-
Confidence 34689999999994 5655543311100000022356778889887 79999999999853 232 36788999955
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCCCCCC--ChhhHHHHHHHHHHHHhcCCcEEEEEeC--CCCCCchh--hHHHHHh--
Q 046094 100 AFSSLKSIIQEYHLDGIDIDYEKFPMRNA--STPSFAYCIGELITQLKNQSVISVATIA--PFYSTALP--YIKLYKD-- 171 (245)
Q Consensus 100 ~~~sl~~~l~~~~~DGvDiDwE~~p~~~~--d~~~~~~ll~~Lr~~l~~~~~~~~~~v~--p~~~~~~~--~~~~~~~-- 171 (245)
++.+++.+|+||||||||| +|...+ ..+++.++|++|+++++ ++.++.+++ |..-.... ..+...+
T Consensus 95 ---a~~~~i~~y~~dgiDfDiE-~~~~~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~G 168 (294)
T cd06543 95 ---AYQKVIDAYGLTHLDFDIE-GGALTDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAAAANG 168 (294)
T ss_pred ---HHHHHHHHhCCCeEEEecc-CCccccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHHHHcC
Confidence 4459999999999999999 776432 23689999999999884 455555543 33221111 2222121
Q ss_pred -hcCcceEEEEccCCC
Q 046094 172 -YGHVVDYVNYQFYTD 186 (245)
Q Consensus 172 -~~~~vD~~nyd~~~~ 186 (245)
..++|+.|.|||++.
T Consensus 169 v~~d~VNiMtmDyg~~ 184 (294)
T cd06543 169 VDLDTVNIMTMDYGSS 184 (294)
T ss_pred CCcceeeeeeecCCCC
Confidence 244555556787764
No 22
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.71 E-value=5.2e-17 Score=141.77 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=97.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCC-----
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYST----- 161 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~----- 161 (245)
+.++..+++++++++ +.++++|+.|+.||+| ...+.|++.|..|++++|.+|++.|+.++++++|-...
T Consensus 186 L~net~~~~~i~~ii----~~l~~~Gyrgv~iDfE--~v~~~DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~ 259 (423)
T COG3858 186 LNNETAKNRLINNII----TLLDARGYRGVNIDFE--NVGPGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGS 259 (423)
T ss_pred HhcHHHHHHHHHHHH----HHHHhcCcccEEechh--hCCHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCcc
Confidence 478888889976665 9999999999999999 55667899999999999999999999999988886532
Q ss_pred chhhHHHHHhhcCcceEEE---EccCCCCCCCCcchH------HHHHHHHhCCCCCCeeeeeccCCCccc
Q 046094 162 ALPYIKLYKDYGHVVDYVN---YQFYTDKVRSPRGYL------EAFKLRVEQFGREKMVPSYEVNGRGIQ 222 (245)
Q Consensus 162 ~~~~~~~~~~~~~~vD~~n---yd~~~~~~~~~~~~~------~~~~~~~~g~~~~Kl~lGvp~yG~~~~ 222 (245)
|...++. ..+.+++|||. ||-|..| .+|+..+ .+..+...-+|++||+||+|+||++|+
T Consensus 260 W~~~~dy-~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~~vr~~ieya~T~iP~~Kv~mGip~YGYDW~ 327 (423)
T COG3858 260 WHGAYDY-VALGKIADFVILMTYDWHYSG-GPPGPVASIGWVRKVIEYALTVIPAEKVMMGIPLYGYDWT 327 (423)
T ss_pred ccchhhh-hhhceeeeEEEEEEeccCcCC-CCCCcccCchhHhhhhhhhheecchHHeEEcccccccccc
Confidence 2222232 55555555555 6655554 2233222 356777789999999999999999997
No 23
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.8e-16 Score=128.42 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC-CCCChh
Q 046094 53 TLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM-RNASTP 131 (245)
Q Consensus 53 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~-~~~d~~ 131 (245)
.++..++..|.++ +.-|+||+||.+. +... .....++| +++|++++++|||||+|||-|+ .. ...|.+
T Consensus 85 aeFr~~v~aLnae--GkavllsLGGAdg---hIeL-~~~qE~~f----v~eiirlietyGFDGLDiDLEq-~ai~~~dnq 153 (332)
T COG3469 85 AEFRAQVGALNAE--GKAVLLSLGGADG---HIEL-KAGQEQAF----VNEIIRLIETYGFDGLDIDLEQ-SAILAADNQ 153 (332)
T ss_pred HHHHHHHHHhhcc--CcEEEEEccCccc---eEEe-ccchHHHH----HHHHHHHHHHhCCCccccchhh-hhhhhcCCe
Confidence 3556666666655 7889999999773 2222 22336677 6777799999999999999993 22 222333
Q ss_pred -hHHHHHHHHHHHHhcCCcEEEEEeCCCCC---CchhhHHHHHhhcCcceEEEEccCCC-----CCCCCcch-HH-----
Q 046094 132 -SFAYCIGELITQLKNQSVISVATIAPFYS---TALPYIKLYKDYGHVVDYVNYQFYTD-----KVRSPRGY-LE----- 196 (245)
Q Consensus 132 -~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~---~~~~~~~~~~~~~~~vD~~nyd~~~~-----~~~~~~~~-~~----- 196 (245)
-..++++.+|+..+..|.-+.++++|... .+..|...+.++.++.||++.++|+. |.+....+ .+
T Consensus 154 ~v~p~alk~vk~hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~ 233 (332)
T COG3469 154 TVIPAALKAVKDHYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMV 233 (332)
T ss_pred eehHHHHHHHHHHHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHH
Confidence 67889999999998888777777777764 34556666799999999999999964 32222111 11
Q ss_pred --H-HHH----HHh------CCCCCCeeeeeccCC----Cccc--cchHHHHHHHHHHcCccccccc
Q 046094 197 --A-FKL----RVE------QFGREKMVPSYEVNG----RGIQ--GQAFFDALRLLQANGFEVNGGV 244 (245)
Q Consensus 197 --~-~~~----~~~------g~~~~Kl~lGvp~yG----~~~~--~~~~~~~~~~~~~~g~~~~Gv~ 244 (245)
. .++ +.. .+|.+|+++|+|.-- .++. +.-...+.++++..|+++.|||
T Consensus 234 kesfly~~~~slanGtr~f~~ipa~k~aiGLPsn~daAatGyv~dpniv~n~~~rlka~g~~ikGvM 300 (332)
T COG3469 234 KESFLYYLTFSLANGTRGFEKIPADKFAIGLPSNVDAAATGYVKDPNIVDNAFNRLKATGCNIKGVM 300 (332)
T ss_pred HHhHHHHhhhhhhcCcccceecccceeEEecCCCcchhhcCcCCCHHHHHHHHHHhhccCCcccceE
Confidence 1 111 222 368999999999865 2332 4455788899999999999998
No 24
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.43 E-value=1.2e-11 Score=106.71 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=125.0
Q ss_pred ceeEEEEceeeecCCCCCccCCccCcccCCC---------CCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCch
Q 046094 23 IDFHFILSFAIDVDPSGNYQNGKFSPYWAET---------LTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNP 93 (245)
Q Consensus 23 ~~THiiy~fa~~~~~~g~~~~~~~~~~~~d~---------~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r 93 (245)
.+.-++.+|.++...+|++. -+|....+|. +....++.-+.+ ++|||+|+||... .+++.+....
T Consensus 52 ~yd~~~lsFL~~F~~~~Tp~-LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~G---nYs~~~d~dA 125 (568)
T KOG4701|consen 52 TYDAIILSFLIDFNVDGTPV-LNFANLCSDSDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNG---NYSLNNDDDA 125 (568)
T ss_pred ccceeeeehhhhcCCCCCce-eehhcccCccccccccccchhhhHHHHHHhc--CeEEEEeccCccc---ceeeccchhH
Confidence 35567788886666556543 1222212222 123445555444 9999999999653 4667777777
Q ss_pred HHHHHHHHHHHH------HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHH
Q 046094 94 QIWISNAFSSLK------SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIK 167 (245)
Q Consensus 94 ~~fi~~~~~sl~------~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~ 167 (245)
+.|++.+.+... +-+.+--+||+|+|.| -+. ...|.+|.+.||..|...+....++.+|....-..-..
T Consensus 126 ~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE--~g~---~~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~G 200 (568)
T KOG4701|consen 126 TNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIE--KGT---NTAYSALAKRLLEIFASDPRRYYLSAAPQCPVPDHTLG 200 (568)
T ss_pred HHHHHHHHHHhcCCccccCcccchhccceeeeee--cCC---cchHHHHHHHHHHHHccCCceEEeccCCCCCCCchhhh
Confidence 778665542110 0111122899999999 333 34899999999999987665444444555443222211
Q ss_pred HHHhhcCcceEEEEccCCCCC--CCCc--c-hHHHHHHHHhCCCCCC---eeeeeccCC----Ccc-ccchHHHH-HHHH
Q 046094 168 LYKDYGHVVDYVNYQFYTDKV--RSPR--G-YLEAFKLRVEQFGREK---MVPSYEVNG----RGI-QGQAFFDA-LRLL 233 (245)
Q Consensus 168 ~~~~~~~~vD~~nyd~~~~~~--~~~~--~-~~~~~~~~~~g~~~~K---l~lGvp~yG----~~~-~~~~~~~~-~~~~ 233 (245)
. .--.+-+||+.++||+... .+.+ + ..+........+.++| ++||+|.-. .++ .+..+.+. +...
T Consensus 201 ~-aL~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~~~a~nKn~~lFLGLPg~~~AAGSGYIsp~~Lt~~~l~~~ 279 (568)
T KOG4701|consen 201 K-ALSENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAEDSAYNKNTSLFLGLPGHQNAAGSGYISPKNLTRDLLNYK 279 (568)
T ss_pred h-hhhccccceEEEEeecCCCcccccCcccccHHHHHHHHhhhcccccceEEeeccCCcccccCCccCchHHHHHHHHhh
Confidence 1 1225679999999998632 1111 1 1123333455677777 999999764 333 35566444 5555
Q ss_pred HHcCcccccccC
Q 046094 234 QANGFEVNGGVL 245 (245)
Q Consensus 234 ~~~g~~~~Gv~~ 245 (245)
++.. .+|||||
T Consensus 280 a~S~-~fGGv~L 290 (568)
T KOG4701|consen 280 ANST-LFGGVTL 290 (568)
T ss_pred hhcc-ccccEEE
Confidence 5555 9999996
No 25
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.9e-09 Score=91.22 Aligned_cols=163 Identities=10% Similarity=0.137 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCceEEE--EEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEE-eccCCCCCCChhh
Q 046094 56 PDSVAAVKARHPNVKALA--SLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDID-YEKFPMRNASTPS 132 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvll--siGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiD-wE~~p~~~~d~~~ 132 (245)
...++++|+++++++++. -+..|.. ..+. +--..++.++.+.+.++++|+++||||+.++ |-.+...-.+ ..
T Consensus 130 ~gwiralRk~~~~l~ivPR~~fd~~~~--~d~k--e~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d-~~ 204 (392)
T KOG2091|consen 130 PGWIRALRKSGKDLHIVPRFYFDEFTS--ADLK--EFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIAD-KD 204 (392)
T ss_pred hHHHHHHHHhCCCceeeceehhhhccc--hHHH--HHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhh-hH
Confidence 677899999999999762 2223331 1111 1122333444456777899999999999998 5522222111 25
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCC-chh---h-HHHH---HhhcCcceEEEEccCCC---CCCCCcchHHHHHHH
Q 046094 133 FAYCIGELITQLKNQSVISVATIAPFYST-ALP---Y-IKLY---KDYGHVVDYVNYQFYTD---KVRSPRGYLEAFKLR 201 (245)
Q Consensus 133 ~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~-~~~---~-~~~~---~~~~~~vD~~nyd~~~~---~~~~~~~~~~~~~~~ 201 (245)
...|++.|-+++++..+..+.+++|...+ ..+ + .+.+ ....+.+.+|+||+.+. ....|..+....-..
T Consensus 205 al~~v~hl~k~Lhkq~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~ 284 (392)
T KOG2091|consen 205 ALELVEHLGKALHKQELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHH 284 (392)
T ss_pred HHHHHHHHHHHHHHhheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHH
Confidence 56788899999999888888888874321 111 1 2223 44555566666887763 223333333221111
Q ss_pred HhC--CCCCCeeeeeccCCCcccc
Q 046094 202 VEQ--FGREKMVPSYEVNGRGIQG 223 (245)
Q Consensus 202 ~~g--~~~~Kl~lGvp~yG~~~~~ 223 (245)
..| -.+.||.+|+.|||..+..
T Consensus 285 l~~~s~~r~KiLlGlNFYG~d~~~ 308 (392)
T KOG2091|consen 285 LGGSSAKRPKILLGLNFYGNDFNL 308 (392)
T ss_pred hCCccccccceeEeeecccccccc
Confidence 222 2347999999999999875
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.46 E-value=4.1e-06 Score=73.80 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCceEEEEEc-CCCCCCCccc--cCC-CCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC-CCCChh
Q 046094 57 DSVAAVKARHPNVKALASLS-GWSLGSKVLH--WYN-PRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM-RNASTP 131 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiG-G~~~~~~~~~--~~~-~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~-~~~d~~ 131 (245)
.-+..++++ +|||+-.|- -|+.+..... ..+ ++.+..+++.+ +++++.|||||+-||+| ... ...+++
T Consensus 50 ~~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kL----v~lak~yGfDGw~iN~E-~~~~~~~~~~ 122 (339)
T cd06547 50 DWINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKL----VEVAKYYGFDGWLINIE-TELGDAEKAK 122 (339)
T ss_pred HHHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHH----HHHHHHhCCCceEeeee-ccCCcHHHHH
Confidence 344566555 999996663 1221111122 344 88888885555 59999999999999999 665 456788
Q ss_pred hHHHHHHHHHHHHhcCC---cEEEEE-eC-CCCCCchhhHHH-HHhhcCcce--EEEEccCCCCCCCCcchHHH-HHHHH
Q 046094 132 SFAYCIGELITQLKNQS---VISVAT-IA-PFYSTALPYIKL-YKDYGHVVD--YVNYQFYTDKVRSPRGYLEA-FKLRV 202 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~---~~~~~~-v~-p~~~~~~~~~~~-~~~~~~~vD--~~nyd~~~~~~~~~~~~~~~-~~~~~ 202 (245)
++..|+++|++++++.. .++.-. +. .+.-.+.+-+.. =....+..| |+||. |.. ...... .....
T Consensus 123 ~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff~~~D~~FlNY~----W~~--~~l~~s~~~a~~ 196 (339)
T cd06547 123 RLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFFDVCDGIFLNYW----WTE--ESLERSVQLAEG 196 (339)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHHhhhcceeEecC----CCc--chHHHHHHHHHH
Confidence 99999999999999843 333221 11 111111111100 012234566 44553 322 122222 23456
Q ss_pred hCCCCCCeeeeeccCCCccc-cchH--HHHHHHHHHcC
Q 046094 203 EQFGREKMVPSYEVNGRGIQ-GQAF--FDALRLLQANG 237 (245)
Q Consensus 203 ~g~~~~Kl~lGvp~yG~~~~-~~~~--~~~~~~~~~~g 237 (245)
.|-.+.+|.+||-..||+.. +... ..++...++.+
T Consensus 197 ~g~~~~dvy~GiDv~grg~~~~~~~~~~~~~~~~~~~~ 234 (339)
T cd06547 197 LGRSPYDVYVGVDVWGRGTKGGGGWNSDKALDEIKKAG 234 (339)
T ss_pred cCCCHhHEEEEEEEEcCCcccCCCCchhhhhhhhcccC
Confidence 77888999999999998765 3333 34444444444
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.81 E-value=8.5e-05 Score=64.87 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCeEEEE-eccCCCC-----------------------CCC-------hhhHHHHHHHHHHHHhcCCc
Q 046094 101 FSSLKSIIQEYHLDGIDID-YEKFPMR-----------------------NAS-------TPSFAYCIGELITQLKNQSV 149 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiD-wE~~p~~-----------------------~~d-------~~~~~~ll~~Lr~~l~~~~~ 149 (245)
++.+.+++++|.+|||.+| .- ||.. ..| +++...|++++++++++...
T Consensus 143 ~~~v~Eiv~~YdvDGIhlDdy~-yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP 221 (311)
T PF02638_consen 143 IDIVKEIVKNYDVDGIHLDDYF-YPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKP 221 (311)
T ss_pred HHHHHHHHhcCCCCeEEecccc-cccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445789999999999999 44 5421 122 34788999999999988654
Q ss_pred EEEEEeCCCCCC---chhhH---HHHHhhcCcceEEEEccCCC-CCCCCcchHHHHHHHHhCCCCC--CeeeeeccCCCc
Q 046094 150 ISVATIAPFYST---ALPYI---KLYKDYGHVVDYVNYQFYTD-KVRSPRGYLEAFKLRVEQFGRE--KMVPSYEVNGRG 220 (245)
Q Consensus 150 ~~~~~v~p~~~~---~~~~~---~~~~~~~~~vD~~nyd~~~~-~~~~~~~~~~~~~~~~~g~~~~--Kl~lGvp~yG~~ 220 (245)
-+..+++|.... ...++ ..+.+ ..++|++.-|.|.. -......+.+...+...-+.+. +|.+|+.+|--.
T Consensus 222 ~v~~sisp~g~~~~~y~~~~qD~~~W~~-~G~iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~~~~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 222 WVKFSISPFGIWNSAYDDYYQDWRNWLK-EGYIDYIVPQIYWSDFSHFTAPYEQLAKWWAKQVKPTNVHLYIGLALYKVG 300 (311)
T ss_pred CCeEEEEeecchhhhhhheeccHHHHHh-cCCccEEEeeecccccchhHHHHHHHHHHHHHhhcCCCceEEEccCcCCCC
Confidence 333333443222 11111 12233 58899999888875 3333444555555555544333 899999998643
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.11 E-value=0.00095 Score=58.27 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCceEEEEEc-CCCCCCCccc--c-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-CChh
Q 046094 57 DSVAAVKARHPNVKALASLS-GWSLGSKVLH--W-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-ASTP 131 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiG-G~~~~~~~~~--~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-~d~~ 131 (245)
.-+..++++ +||||-.|- .|+.+..... + .++.....++ +.|+++++-|||||.-|++| .+... ...+
T Consensus 46 ~widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A----~kLi~ia~~yGFDGw~iN~E-~~~~~~~~~~ 118 (311)
T PF03644_consen 46 GWIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYA----DKLIEIAKYYGFDGWLINIE-TPLSGPEDAE 118 (311)
T ss_dssp HHHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHH----HHHHHHHHHHT--EEEEEEE-ESSTTGGGHH
T ss_pred hhHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHH----HHHHHHHHHcCCCceEEEec-ccCCchhHHH
Confidence 344566554 999984442 2332222222 2 3667777774 45559999999999999999 67654 4678
Q ss_pred hHHHHHHHHHHHHhc--CCcEEEE-EeCCCCC-CchhhHHHH-HhhcCcceEEEEccCCCCCCCCcchHH-HHHHHHhCC
Q 046094 132 SFAYCIGELITQLKN--QSVISVA-TIAPFYS-TALPYIKLY-KDYGHVVDYVNYQFYTDKVRSPRGYLE-AFKLRVEQF 205 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~--~~~~~~~-~v~p~~~-~~~~~~~~~-~~~~~~vD~~nyd~~~~~~~~~~~~~~-~~~~~~~g~ 205 (245)
++..|+++||++.++ ...++.- ++..... .+.+.+... ....+..|=+-.+|... +..... +......+.
T Consensus 119 ~l~~F~~~l~~~~~~~~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFlNY~W~----~~~l~~s~~~A~~~~~ 194 (311)
T PF03644_consen 119 NLIDFLKYLRKEAHENPGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFLNYNWN----PDSLESSVANAKSRGR 194 (311)
T ss_dssp HHHHHHHHHHHHHHHT-T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE-S--S----HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeEecCCC----cccHHHHHHHHHHcCC
Confidence 999999999999998 2222222 2222211 111111000 11133344443333321 122222 234456788
Q ss_pred CCCCeeeeeccCCCc
Q 046094 206 GREKMVPSYEVNGRG 220 (245)
Q Consensus 206 ~~~Kl~lGvp~yG~~ 220 (245)
+|.+|.+|+-..||.
T Consensus 195 ~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 195 DPYDVYAGIDVFGRG 209 (311)
T ss_dssp -GGGEEEEEEHHHHT
T ss_pred CHHHEEEEEEEEcCC
Confidence 888899998888877
No 29
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.75 E-value=0.033 Score=44.41 Aligned_cols=112 Identities=18% Similarity=0.304 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHH-cCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCc
Q 046094 97 ISNAFSSLKSIIQE-YHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHV 175 (245)
Q Consensus 97 i~~~~~sl~~~l~~-~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~ 175 (245)
++.+.+.+.++-.. +...||.||+. .+.+ .-+.|..|+++||++|++.-.+++...+.+... .+-++.+...
T Consensus 26 ~~~i~~~l~~W~~~G~~v~giQIDfD-a~t~--~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~----~~~L~~L~~~ 98 (181)
T PF11340_consen 26 LARILQLLQRWQAAGNNVAGIQIDFD-AATS--RLPAYAQFLQQLRQRLPPDYRLSITALPDWLSS----PDWLNALPGV 98 (181)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecC-cccc--chHHHHHHHHHHHHhCCCCceEeeEEehhhhcC----chhhhhHhhc
Confidence 34444444455533 47899999999 5544 356999999999999988655544444433322 1212667777
Q ss_pred ceEEEEccCCCCCCCCcchHHHHHHHHhCCCCCCeeeeeccCC
Q 046094 176 VDYVNYQFYTDKVRSPRGYLEAFKLRVEQFGREKMVPSYEVNG 218 (245)
Q Consensus 176 vD~~nyd~~~~~~~~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG 218 (245)
||-.-.+.|-+ ...+..+..-.. ....+. --.-+|+|.||
T Consensus 99 VDE~VlQ~yqG-l~d~~~~~~yl~-~l~~l~-~PFriaLp~yG 138 (181)
T PF11340_consen 99 VDELVLQVYQG-LFDPPNYARYLP-RLARLT-LPFRIALPQYG 138 (181)
T ss_pred CCeeEEEeecC-CCCHHHHHHHHH-HHhcCC-CCeEEecCcCC
Confidence 88888777733 233332222111 122333 44568999999
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.47 E-value=0.049 Score=47.61 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=70.0
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC----------C-C---hhhHHHHHHHHHHHHhcCCcE
Q 046094 85 LHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN----------A-S---TPSFAYCIGELITQLKNQSVI 150 (245)
Q Consensus 85 ~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~----------~-d---~~~~~~ll~~Lr~~l~~~~~~ 150 (245)
..+-||-+++.+-= .-.|..-+.+.|||.|.+|+--||... . . .+....||+..|+++++.+..
T Consensus 112 ~~WvnP~~~evw~Y--~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 112 EAWVNPYSKEVWDY--NIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVP 189 (316)
T ss_pred CccCCCCCHHHHHH--HHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCC
Confidence 33567777775532 225667778899999999987688721 0 1 147789999999999999988
Q ss_pred EEEEeCCCCCCc---hhhHHHHHhhcCcceEEEEccCC
Q 046094 151 SVATIAPFYSTA---LPYIKLYKDYGHVVDYVNYQFYT 185 (245)
Q Consensus 151 ~~~~v~p~~~~~---~~~~~~~~~~~~~vD~~nyd~~~ 185 (245)
+++.+.+..... ...-..+.+++++||+|.-|.|-
T Consensus 190 vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYP 227 (316)
T PF13200_consen 190 VSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYP 227 (316)
T ss_pred EEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccc
Confidence 888776554322 11222338899999999988773
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=94.88 E-value=0.43 Score=42.97 Aligned_cols=157 Identities=18% Similarity=0.281 Sum_probs=92.2
Q ss_pred CceEEEE-EcCCCCCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHH
Q 046094 68 NVKALAS-LSGWSLGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQL 144 (245)
Q Consensus 68 ~~kvlls-iGG~~~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l 144 (245)
++||+-. |-.|+.|...-. .++.++.+.. +..|+++.+-+||||=-|+.|+ -.+...-+++..|++.|.+++
T Consensus 124 GV~vlGTFItEw~eg~~~c~~~La~~es~~~~----~e~L~~l~~~fgFdGWLiNiEn-~i~~~~i~~l~~F~~~Lt~~~ 198 (526)
T KOG2331|consen 124 GVKVLGTFITEWDEGKATCKEFLATEESVEMT----VERLVELARFFGFDGWLINIEN-KIDLAKIPNLIQFVSHLTKVL 198 (526)
T ss_pred CceeeeeEEEEeccchhHHHHHHccchhHHHH----HHHHHHHHHHhCCceEEEEeee-ccChhhCccHHHHHHHHHHHH
Confidence 8999844 345775544333 3566666666 5555699999999999999993 434344569999999999999
Q ss_pred hcC---CcEEEEE-eCCCCCCchhhHHHHH----hhcCcce--EEEEccCCCCCCCCcchHHHHHHHHhCCCCCCeeeee
Q 046094 145 KNQ---SVISVAT-IAPFYSTALPYIKLYK----DYGHVVD--YVNYQFYTDKVRSPRGYLEAFKLRVEQFGREKMVPSY 214 (245)
Q Consensus 145 ~~~---~~~~~~~-v~p~~~~~~~~~~~~~----~~~~~vD--~~nyd~~~~~~~~~~~~~~~~~~~~~g~~~~Kl~lGv 214 (245)
++. ++.+.-- |.-... ....+.+. ...|..| ||||. |... +.. ...-..|-.+..+.|||
T Consensus 199 ~~~~p~~~ViWYDSV~~~G~--L~WQ~eLne~N~~Ffd~cdg~~~NY~----Wke~--~l~--rsa~~~~~~r~~v~~Gi 268 (526)
T KOG2331|consen 199 HSSVPGGLVIWYDSVTDDGQ--LHWQNELNEMNRKFFDACDGIFMNYN----WKEK--HLE--RSAEQAGDRRHRVFMGI 268 (526)
T ss_pred hhcCCCceEEEEeeeeecCe--eehhhhhhhhcchhhhhcceeeeecc----cccc--hHH--HHHHhhhhhhhceEEEe
Confidence 874 4444331 111111 11211112 1222222 33332 3111 111 11123445577999999
Q ss_pred ccCCCccccc-hHHHHHHHHHHcCcc
Q 046094 215 EVNGRGIQGQ-AFFDALRLLQANGFE 239 (245)
Q Consensus 215 p~yG~~~~~~-~~~~~~~~~~~~g~~ 239 (245)
-.+||+-.+. .--.+++.+|+.|.+
T Consensus 269 DVf~Rg~~ggf~~~~s~~L~k~~~~S 294 (526)
T KOG2331|consen 269 DVFGRGCVGGFHCDQSLELIKKNGFS 294 (526)
T ss_pred EEEecccccccchhHHHHHHHHcCce
Confidence 9999876543 226778888888855
No 32
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=92.81 E-value=0.69 Score=40.51 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCceEE--EEEcCCCCCCCc-------cc----c-CCCC---------chHHHHHHHHHHHHHHHHHcC
Q 046094 56 PDSVAAVKARHPNVKAL--ASLSGWSLGSKV-------LH----W-YNPR---------NPQIWISNAFSSLKSIIQEYH 112 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvl--lsiGG~~~~~~~-------~~----~-~~~~---------~r~~fi~~~~~sl~~~l~~~~ 112 (245)
.+.+..||++ +.||+ +|||-+..-... +. . .++. ....|.+-+.+. ++.+.+.|
T Consensus 84 ~~~i~~Lk~~--g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kG 160 (315)
T TIGR01370 84 PEEIVRAAAA--GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQG 160 (315)
T ss_pred HHHHHHHHhC--CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcC
Confidence 5667788865 77776 899975431110 00 0 1110 012332222322 47778899
Q ss_pred CCeEEEEecc----CCCCC----CChhhHHHHHHHHHHHHhcCCc
Q 046094 113 LDGIDIDYEK----FPMRN----ASTPSFAYCIGELITQLKNQSV 149 (245)
Q Consensus 113 ~DGvDiDwE~----~p~~~----~d~~~~~~ll~~Lr~~l~~~~~ 149 (245)
|||+.+|.-+ ++... ...+.+..++++|.+..++...
T Consensus 161 fDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 161 FDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred CCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 9999999542 12111 1235788899999766666543
No 33
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.69 E-value=2.7 Score=36.09 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCC------Chh
Q 046094 58 SVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNA------STP 131 (245)
Q Consensus 58 ~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~------d~~ 131 (245)
.+...++..++..++++|+|.+. +.+++ +++.+.++|+|+|+|++- .|.... +.+
T Consensus 88 ~i~~~~~~~~~~pvi~si~g~~~-------------~~~~~-----~a~~~~~~G~d~ielN~~-cP~~~~~~~~~~~~~ 148 (289)
T cd02810 88 DIAKAKKEFPGQPLIASVGGSSK-------------EDYVE-----LARKIERAGAKALELNLS-CPNVGGGRQLGQDPE 148 (289)
T ss_pred HHHHHHhccCCCeEEEEeccCCH-------------HHHHH-----HHHHHHHhCCCEEEEEcC-CCCCCCCcccccCHH
Confidence 34444333257889999998431 23322 237778889999999998 786432 233
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 132 SFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
...++++++|+.. ...+++-+.+..
T Consensus 149 ~~~eiv~~vr~~~---~~pv~vKl~~~~ 173 (289)
T cd02810 149 AVANLLKAVKAAV---DIPLLVKLSPYF 173 (289)
T ss_pred HHHHHHHHHHHcc---CCCEEEEeCCCC
Confidence 5567788888765 344555555543
No 34
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=92.45 E-value=0.26 Score=46.99 Aligned_cols=119 Identities=23% Similarity=0.211 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCceEEE-E--EcCCCCCCCccccCCCC-chHHHHHHHHHHHHHHH-HHcCCCeEEEEeccCCCCCCCh
Q 046094 56 PDSVAAVKARHPNVKALA-S--LSGWSLGSKVLHWYNPR-NPQIWISNAFSSLKSII-QEYHLDGIDIDYEKFPMRNAST 130 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvll-s--iGG~~~~~~~~~~~~~~-~r~~fi~~~~~sl~~~l-~~~~~DGvDiDwE~~p~~~~d~ 130 (245)
+..+++.|++||++|+.+ . .=||-..... .+. +.+.-+.- +++|| -.+.-.|+||||- -+. .++
T Consensus 115 ~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~----~~~~~~~~~a~Y----~~~wl~ga~~~~gl~idYv-g~~--NEr 183 (669)
T PF02057_consen 115 WWLMAEAKKRNPNIKLYGLPWGFPGWVGNGWN----WPYDNPQLTAYY----VVSWLLGAKKTHGLDIDYV-GIW--NER 183 (669)
T ss_dssp HHHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-----TTSSHHHHHHH----HHHHHHHHHHHH-----EE--S---TTS
T ss_pred hhhHHHHHhhCCCCeEEEeccCCCccccCCCC----CcccchhhhhHH----HHHHHHHHHHHhCCCceEe-chh--hcc
Confidence 577889999999999963 2 2244322211 121 11111112 23555 2334447788888 342 233
Q ss_pred hhHHHHHHHHHHHHhcCCc---EEEEEeCCCCCCchhhHHHHHhhcCcceEEEEccCCC
Q 046094 131 PSFAYCIGELITQLKNQSV---ISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQFYTD 186 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l~~~~~---~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~nyd~~~~ 186 (245)
.-=...++.||+.|++.++ .++++=.-........... +++.+.||.|.+.|-+.
T Consensus 184 ~~~~~~ik~lr~~l~~~gy~~vkiva~D~~~~~~~~~m~~D-~~l~~avdvig~HY~~~ 241 (669)
T PF02057_consen 184 GFDVNYIKWLRKALNSNGYNKVKIVAADNNWESISDDMLSD-PELRNAVDVIGYHYPGT 241 (669)
T ss_dssp ---HHHHHHHHHHHHHTT-TT-EEEEEEE-STTHHHHHHH--HHHHHH--EEEEES-TT
T ss_pred CCChhHHHHHHHHHhhccccceEEEEeCCCccchhhhhhcC-HHHHhcccEeccccCCC
Confidence 3335678999999998874 2333211111100112333 78899999999877653
No 35
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.28 E-value=3.9 Score=35.41 Aligned_cols=70 Identities=10% Similarity=0.176 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcC-CCeEEEEeccCCCCCC-------ChhhHHHHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYH-LDGIDIDYEKFPMRNA-------STPSFAYCIGE 139 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~-~DGvDiDwE~~p~~~~-------d~~~~~~ll~~ 139 (245)
+..+++||+|.+ .+.|++. ...+++.| +|||+|+.- .|.... +.+...+++++
T Consensus 91 ~~p~i~si~g~~-------------~~~~~~~-----a~~~~~aG~~D~iElN~~-cP~~~~gg~~~~~~~~~~~eiv~~ 151 (301)
T PRK07259 91 DTPIIANVAGST-------------EEEYAEV-----AEKLSKAPNVDAIELNIS-CPNVKHGGMAFGTDPELAYEVVKA 151 (301)
T ss_pred CCcEEEEeccCC-------------HHHHHHH-----HHHHhccCCcCEEEEECC-CCCCCCCccccccCHHHHHHHHHH
Confidence 678999998732 2445332 36788898 999999986 675322 23355667777
Q ss_pred HHHHHhcCCcEEEEEeCCCC
Q 046094 140 LITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 140 Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+|+.. ...+.+-+.|..
T Consensus 152 vr~~~---~~pv~vKl~~~~ 168 (301)
T PRK07259 152 VKEVV---KVPVIVKLTPNV 168 (301)
T ss_pred HHHhc---CCCEEEEcCCCc
Confidence 77765 344455455543
No 36
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.45 E-value=5.7 Score=34.21 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=45.4
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCC-------ChhhHHHHHHH
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNA-------STPSFAYCIGE 139 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~-------d~~~~~~ll~~ 139 (245)
.+.+++++|+|.+ .+.|++. ...+++.|+|+|+|+.- .|.... +.+...+++++
T Consensus 88 ~~~p~ivsi~g~~-------------~~~~~~~-----a~~~~~~G~d~iElN~~-cP~~~~~g~~~~~~~~~~~eiv~~ 148 (296)
T cd04740 88 FGTPVIASIAGST-------------VEEFVEV-----AEKLADAGADAIELNIS-CPNVKGGGMAFGTDPEAVAEIVKA 148 (296)
T ss_pred CCCcEEEEEecCC-------------HHHHHHH-----HHHHHHcCCCEEEEECC-CCCCCCCcccccCCHHHHHHHHHH
Confidence 4688999998832 2344332 37778889999999988 786432 23345567777
Q ss_pred HHHHHhcCCcEEEEEeCCCC
Q 046094 140 LITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 140 Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+|+.. ...+.+-+.|..
T Consensus 149 vr~~~---~~Pv~vKl~~~~ 165 (296)
T cd04740 149 VKKAT---DVPVIVKLTPNV 165 (296)
T ss_pred HHhcc---CCCEEEEeCCCc
Confidence 77665 344445455543
No 37
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.87 E-value=9.7 Score=34.39 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC--------
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-------- 127 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-------- 127 (245)
.+.+..+|++.|++.+++||.|.. +.+.|+ .+++.+.+.|.|++.|+.- .|...
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~------------s~~~~~-----~~a~~~e~~GaD~iELNiS-CPn~~~~r~~g~~ 162 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEY------------NKDAWE-----EIIERVEETGVDALEINFS-CPHGMPERKMGAA 162 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCC------------CHHHHH-----HHHHHHHhcCCCEEEEECC-CCCCCCcCccchh
Confidence 455667777778899999996521 123342 2347788899999999998 88753
Q ss_pred --CChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHH-HHHhhcCcceEEE
Q 046094 128 --ASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIK-LYKDYGHVVDYVN 180 (245)
Q Consensus 128 --~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~-~~~~~~~~vD~~n 180 (245)
.+.+...++++.+|+.. ..-+.+-++|.......... ....=++-|-.+|
T Consensus 163 ~gq~~e~~~~i~~~Vk~~~---~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 163 VGQDCDLLEEVCGWINAKA---TVPVWAKMTPNITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred hccCHHHHHHHHHHHHHhh---cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEec
Confidence 22334445556666553 23455556676543222221 1122355555555
No 38
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=88.81 E-value=15 Score=31.78 Aligned_cols=140 Identities=20% Similarity=0.310 Sum_probs=78.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHc-CCCeEEE-------EeccCCCCCCC------hhhHHHHHHHHHHHHhcCCcEE--
Q 046094 88 YNPRNPQIWISNAFSSLKSIIQEY-HLDGIDI-------DYEKFPMRNAS------TPSFAYCIGELITQLKNQSVIS-- 151 (245)
Q Consensus 88 ~~~~~r~~fi~~~~~sl~~~l~~~-~~DGvDi-------DwE~~p~~~~d------~~~~~~ll~~Lr~~l~~~~~~~-- 151 (245)
.+++.|+. |.+|.+=|..| .||||=+ |.| .|.-..+ .+.+..|..+|++..++....+
T Consensus 116 f~p~~r~~-----I~~IYeDLA~y~~fdGILFhDDa~L~D~E-~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 116 FDPEARQI-----IKEIYEDLARYSKFDGILFHDDAVLSDFE-IAAIRQNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred CCHHHHHH-----HHHHHHHHHhhCCCCeEEEcCCccccchh-hhhhccChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 35554443 55666777777 8999988 344 3332111 2367888899988887643211
Q ss_pred ------EEEeCCCCCCchhhHHHHHhhcCcceEEEEcc--CCCCCCCCcchH-HHHHHHHhCCC-CCCeeeeeccCCCcc
Q 046094 152 ------VATIAPFYSTALPYIKLYKDYGHVVDYVNYQF--YTDKVRSPRGYL-EAFKLRVEQFG-REKMVPSYEVNGRGI 221 (245)
Q Consensus 152 ------~~~v~p~~~~~~~~~~~~~~~~~~vD~~nyd~--~~~~~~~~~~~~-~~~~~~~~g~~-~~Kl~lGvp~yG~~~ 221 (245)
.....|....| +..-+....+..||..++. |-+....+..+. ++...+.+... .+|+++=+.. +.|
T Consensus 190 ARNiya~pvl~P~se~W--fAQnl~~fl~~YD~taimAMPymE~~~~~~~WL~~Lv~~v~~~p~~l~KtvFELQa--~dw 265 (294)
T PF14883_consen 190 ARNIYAEPVLNPESEAW--FAQNLDDFLKAYDYTAIMAMPYMEQAEDPEQWLAQLVDAVAARPGGLDKTVFELQA--VDW 265 (294)
T ss_pred hhcccccccCCcchhhH--HHHhHHHHHHhCCeeheeccchhccccCHHHHHHHHHHHHHhcCCcccceEEEEec--cCC
Confidence 11122322111 2111255555667766433 223323333333 34455554444 6899999988 677
Q ss_pred c------cchHHHHHHHHHHcC
Q 046094 222 Q------GQAFFDALRLLQANG 237 (245)
Q Consensus 222 ~------~~~~~~~~~~~~~~g 237 (245)
. ..++.+-|+.+++.|
T Consensus 266 r~~~~I~~~~L~~~m~~L~~~G 287 (294)
T PF14883_consen 266 RTSKPIPSEELADWMRQLQLNG 287 (294)
T ss_pred ccCCcCCHHHHHHHHHHHHHcC
Confidence 5 346688899998877
No 39
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=2.6 Score=36.50 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCC---------------hhhHHHHHHHHHHHHhcCCcEEE
Q 046094 88 YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNAS---------------TPSFAYCIGELITQLKNQSVISV 152 (245)
Q Consensus 88 ~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d---------------~~~~~~ll~~Lr~~l~~~~~~~~ 152 (245)
-++-+...|.=|+ +|..-+.++|||-|.+|+--||.+++. .+.+..||.--|+.+. .-++
T Consensus 187 Vd~y~~~~WeYNv--tIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS 261 (400)
T COG1306 187 VDAYDKNLWEYNV--TIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPIS 261 (400)
T ss_pred ecccchhhhhhhH--HHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceE
Confidence 3444444554444 677888999999999998778986531 1255667777777664 2344
Q ss_pred EEeCCCCCCch---hhHHHHHhhcCcceEEEEccCC
Q 046094 153 ATIAPFYSTAL---PYIKLYKDYGHVVDYVNYQFYT 185 (245)
Q Consensus 153 ~~v~p~~~~~~---~~~~~~~~~~~~vD~~nyd~~~ 185 (245)
+-+.....+.. .--..+..++++||.+.-|+|-
T Consensus 262 ~DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYP 297 (400)
T COG1306 262 ADIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYP 297 (400)
T ss_pred EEeecccCccCCcchhhhhHHHHHhhhhhccccccc
Confidence 44443332221 1123458889999999977773
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.52 E-value=4.9 Score=36.55 Aligned_cols=89 Identities=17% Similarity=0.325 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEecc-CCCCC-------------------CC--------hhhHHHHHHHHHHHHh
Q 046094 94 QIWISNAFSSLKSIIQEYHLDGIDIDYEK-FPMRN-------------------AS--------TPSFAYCIGELITQLK 145 (245)
Q Consensus 94 ~~fi~~~~~sl~~~l~~~~~DGvDiDwE~-~p~~~-------------------~d--------~~~~~~ll~~Lr~~l~ 145 (245)
+.||.+++ ++.+++|..|||.+|--- ||... .+ +++..+|++++....+
T Consensus 184 q~~i~~lv---~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 184 QDFITSLV---VEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred HHHHHHHH---HHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46766555 799999999999999431 23211 01 2377899999999998
Q ss_pred cCCcEEEEEeCC-C--CCCchhh---HH---HHHhhcCcceEEEEccCCC
Q 046094 146 NQSVISVATIAP-F--YSTALPY---IK---LYKDYGHVVDYVNYQFYTD 186 (245)
Q Consensus 146 ~~~~~~~~~v~p-~--~~~~~~~---~~---~~~~~~~~vD~~nyd~~~~ 186 (245)
+...-+.++++| . ......| +. .|-+ ..+||++..|.|-.
T Consensus 261 avKp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~-~G~iD~l~pqvYr~ 309 (418)
T COG1649 261 AVKPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVR-QGLIDELAPQVYRT 309 (418)
T ss_pred hhCCCeEEEEccCCCCCccceehhhhhhhHHHHHH-cccHhhhhhhhhcc
Confidence 876655566666 3 2211122 11 1234 66777777666654
No 41
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=85.42 E-value=1.5 Score=40.94 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCC-----ccc----c---CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccC
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSK-----VLH----W---YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKF 123 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~-----~~~----~---~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~ 123 (245)
...++++++.+|++|++.|- |+.... .+. . ..++-+++|++-+ ++|++.|.=-||+|+=- -
T Consensus 156 ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~----vkfi~aY~~~GI~i~ai-T 228 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYF----VKFIQAYKKEGIPIWAI-T 228 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHH----HHHHHHHHCTT--ESEE-E
T ss_pred HHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHH----HHHHHHHHHCCCCeEEE-e
Confidence 56777778888999999885 542110 010 1 1223456775555 59999999899999754 2
Q ss_pred CCCCC---------------ChhhHHHHHHH-HHHHHhcCCc-----EEEEEeCCCCCCchhhH-HHH--HhhcCcceEE
Q 046094 124 PMRNA---------------STPSFAYCIGE-LITQLKNQSV-----ISVATIAPFYSTALPYI-KLY--KDYGHVVDYV 179 (245)
Q Consensus 124 p~~~~---------------d~~~~~~ll~~-Lr~~l~~~~~-----~~~~~v~p~~~~~~~~~-~~~--~~~~~~vD~~ 179 (245)
+.... ..+....||+. |+-+|++.++ ++..- ........+. .++ ++..++||-+
T Consensus 229 ~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D--~n~~~~~~~~~~il~d~~A~~yv~Gi 306 (496)
T PF02055_consen 229 PQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYD--HNRDNLPDYADTILNDPEAAKYVDGI 306 (496)
T ss_dssp SSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEE--EEGGGTTHHHHHHHTSHHHHTTEEEE
T ss_pred ccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEe--cCCcccchhhhhhhcChhhHhheeEE
Confidence 22111 13356788986 9999988754 22221 1111111232 122 4668899999
Q ss_pred EEccCCC
Q 046094 180 NYQFYTD 186 (245)
Q Consensus 180 nyd~~~~ 186 (245)
.+..|+.
T Consensus 307 A~HwY~g 313 (496)
T PF02055_consen 307 AFHWYGG 313 (496)
T ss_dssp EEEETTC
T ss_pred EEECCCC
Confidence 9888876
No 42
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=84.10 E-value=25 Score=30.40 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC---------
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN--------- 127 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~--------- 127 (245)
+.+..+++..++..+++|+-|.. +.+.|++ +++.+.+.+.|+|||+.- .|...
T Consensus 88 ~~~~~~~~~~~~~p~i~si~G~~------------~~~~~~~-----~a~~~~~~gad~ielN~s-CP~~~~~~~~G~~l 149 (299)
T cd02940 88 KEIRELKKDFPDKILIASIMCEY------------NKEDWTE-----LAKLVEEAGADALELNFS-CPHGMPERGMGAAV 149 (299)
T ss_pred HHHHHHHhhCCCCeEEEEecCCC------------CHHHHHH-----HHHHHHhcCCCEEEEECC-CCCCCCCCCCchhh
Confidence 33455555545677899997741 1134433 236777789999999999 88741
Q ss_pred -CChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 128 -ASTPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 128 -~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
.+.+.+.++++++|+.. ..-+++-+.|..
T Consensus 150 ~~~~~~~~~iv~~v~~~~---~~Pv~vKl~~~~ 179 (299)
T cd02940 150 GQDPELVEEICRWVREAV---KIPVIAKLTPNI 179 (299)
T ss_pred ccCHHHHHHHHHHHHHhc---CCCeEEECCCCc
Confidence 23456777788887654 234555555544
No 43
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.35 E-value=34 Score=31.10 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC---------
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN--------- 127 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~--------- 127 (245)
+.+..+++..++..+++||.|.. ..+.|++ .+..+++.+.|+|||+.- .|...
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~------------~~~~~~~-----~a~~~~~~g~d~ielN~s-cP~~~~~~~~g~~~ 149 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVEC------------NEEEWKE-----IAPLVEETGADGIELNFG-CPHGMSERGMGSAV 149 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCC------------CHHHHHH-----HHHHHHhcCCCEEEEeCC-CCCCccccCCcccc
Confidence 34445555555677889997731 1133432 236778889999999999 88721
Q ss_pred -CChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCC
Q 046094 128 -ASTPSFAYCIGELITQLKNQSVISVATIAPFYS 160 (245)
Q Consensus 128 -~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~ 160 (245)
.+.+.+.++++++|+.. ..-+++-+.|...
T Consensus 150 ~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p~~~ 180 (420)
T PRK08318 150 GQVPELVEMYTRWVKRGS---RLPVIVKLTPNIT 180 (420)
T ss_pred cCCHHHHHHHHHHHHhcc---CCcEEEEcCCCcc
Confidence 24456777788877764 2345555666543
No 44
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.97 E-value=40 Score=29.93 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecc--------CCCCC--CC--------h-hhHHHHHHHHHHHHhcC
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYEK--------FPMRN--AS--------T-PSFAYCIGELITQLKNQ 147 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE~--------~p~~~--~d--------~-~~~~~ll~~Lr~~l~~~ 147 (245)
..++.+++.. ..+++-|||||+|.--| -|..+ .| + .-..+.++++|++++..
T Consensus 134 ~i~~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d 204 (353)
T cd02930 134 QTIEDFARCA-ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGED 204 (353)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 3444444333 45566899999997631 13211 11 1 13356788888888654
No 45
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=80.70 E-value=4.4 Score=38.39 Aligned_cols=60 Identities=20% Similarity=0.434 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEecc-------CCCCCC--ChhhHHHHHHHHHHHHhcCC
Q 046094 88 YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEK-------FPMRNA--STPSFAYCIGELITQLKNQS 148 (245)
Q Consensus 88 ~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~-------~p~~~~--d~~~~~~ll~~Lr~~l~~~~ 148 (245)
.||.+.. |.+-+++.+.+.++..||||+-||=-. +.+... =+..|..||++++++++...
T Consensus 235 ~dP~N~~-WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~ 303 (559)
T PF13199_consen 235 MDPGNPE-WQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKY 303 (559)
T ss_dssp B-TT-HH-HHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSE
T ss_pred ecCCCHH-HHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCc
Confidence 4555543 777788899999999999999999441 111111 14589999999999995443
No 46
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=80.23 E-value=24 Score=28.83 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=40.5
Q ss_pred HhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----------CChhh
Q 046094 64 ARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----------ASTPS 132 (245)
Q Consensus 64 ~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----------~d~~~ 132 (245)
....+.+++++|+|.+ -+.|++. ...+++.|||||+|+-- .|... .+.+-
T Consensus 50 ~~~~~~p~~~qi~g~~-------------~~~~~~a-----a~~~~~aG~d~ieln~g-~p~~~~~~~~~G~~l~~~~~~ 110 (231)
T cd02801 50 RNPEERPLIVQLGGSD-------------PETLAEA-----AKIVEELGADGIDLNMG-CPSPKVTKGGAGAALLKDPEL 110 (231)
T ss_pred cCccCCCEEEEEcCCC-------------HHHHHHH-----HHHHHhcCCCEEEEeCC-CCHHHHhCCCeeehhcCCHHH
Confidence 3445789999999843 1234332 26777889999999876 56421 12234
Q ss_pred HHHHHHHHHHHHh
Q 046094 133 FAYCIGELITQLK 145 (245)
Q Consensus 133 ~~~ll~~Lr~~l~ 145 (245)
..++++++|+..+
T Consensus 111 ~~eii~~v~~~~~ 123 (231)
T cd02801 111 VAEIVRAVREAVP 123 (231)
T ss_pred HHHHHHHHHHhcC
Confidence 5677888877665
No 47
>PRK12568 glycogen branching enzyme; Provisional
Probab=77.36 E-value=5 Score=39.23 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCeEEEEec------cC--------CCCCCChhhH--HHHHHHHHHHHhcC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYE------KF--------PMRNASTPSF--AYCIGELITQLKNQ 147 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE------~~--------p~~~~d~~~~--~~ll~~Lr~~l~~~ 147 (245)
++++.-|+++|++||+-+|=- +| |...+.++|+ ..|+++|++.+++.
T Consensus 390 i~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 390 LGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 556679999999999999921 01 3222334455 57999999999865
No 48
>PRK14706 glycogen branching enzyme; Provisional
Probab=76.38 E-value=9 Score=37.03 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCeEEEEe-cc-----C------CCCCCChhh--HHHHHHHHHHHHhcCC--cEEE
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLDGIDIDY-EK-----F------PMRNASTPS--FAYCIGELITQLKNQS--VISV 152 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDw-E~-----~------p~~~~d~~~--~~~ll~~Lr~~l~~~~--~~~~ 152 (245)
+++.|+-+ ++++.-|++++++||+-+|= .+ + |..-+.++| =..|+++|++.+++.. .+++
T Consensus 280 ~~eVr~~l----~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~i 355 (639)
T PRK14706 280 RNEVVMFL----IGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMI 355 (639)
T ss_pred CHHHHHHH----HHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 34445444 55667999999999999993 10 1 111122233 3568999998887643 3444
Q ss_pred E
Q 046094 153 A 153 (245)
Q Consensus 153 ~ 153 (245)
+
T Consensus 356 A 356 (639)
T PRK14706 356 A 356 (639)
T ss_pred E
Confidence 4
No 49
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.95 E-value=42 Score=29.80 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecc--------CCCCC--CC--------hhh-HHHHHHHHHHHHhc---CCcEEE
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYEK--------FPMRN--AS--------TPS-FAYCIGELITQLKN---QSVISV 152 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE~--------~p~~~--~d--------~~~-~~~ll~~Lr~~l~~---~~~~~~ 152 (245)
..++.++++. ..+++-|||||+|.-=| -|..+ .| +.. ..+.++++|++.+. ....+.
T Consensus 141 ~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 141 DIIDAFGEAT-RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 4444444333 45667899999998531 14321 11 112 34688888888862 344455
Q ss_pred EEeCCCCC-----CchhhHHHHHhhcCc-ceEEEEcc
Q 046094 153 ATIAPFYS-----TALPYIKLYKDYGHV-VDYVNYQF 183 (245)
Q Consensus 153 ~~v~p~~~-----~~~~~~~~~~~~~~~-vD~~nyd~ 183 (245)
+-+.+... .......+.+.+.+. +|+++...
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 54444321 111223333444333 78888653
No 50
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=75.81 E-value=36 Score=29.74 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC----C-------CChhhHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR----N-------ASTPSFAYC 136 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~----~-------~d~~~~~~l 136 (245)
...+.+.|.|.+ .+.|++.+ ..+.+.|+|+|||+-- .|.. . .+.+-..++
T Consensus 62 e~p~~vQl~g~~-------------p~~~~~aA-----~~~~~~g~d~IdiN~G-CP~~~v~~~g~Gs~Ll~~~~~~~ei 122 (312)
T PRK10550 62 GTLVRIQLLGQY-------------PQWLAENA-----ARAVELGSWGVDLNCG-CPSKTVNGSGGGATLLKDPELIYQG 122 (312)
T ss_pred CCcEEEEeccCC-------------HHHHHHHH-----HHHHHcCCCEEEEeCC-CCchHHhcCCCchHhhcCHHHHHHH
Confidence 366888888733 12343332 5677789999999998 7862 1 133455677
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCc-ceEEEEc
Q 046094 137 IGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHV-VDYVNYQ 182 (245)
Q Consensus 137 l~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~-vD~~nyd 182 (245)
++++|++.+. ...+++-+....+......++.+.+.+. +|++.+.
T Consensus 123 v~avr~~~~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 123 AKAMREAVPA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHHHhcCC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 8888877643 2445554444332212233443333333 7888753
No 51
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=72.58 E-value=20 Score=31.67 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHcCCCeEEEEecc-C-------CCCC--CC--------hh-hHHHHHHHHHHHHhcCCcEEEEEeCCCCC-----
Q 046094 105 KSIIQEYHLDGIDIDYEK-F-------PMRN--AS--------TP-SFAYCIGELITQLKNQSVISVATIAPFYS----- 160 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~-~-------p~~~--~d--------~~-~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~----- 160 (245)
...+++-|||||+|.--+ | |..+ .| +. -..+.++++|++.+.. . +.+-+.+...
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~-v~vRis~~~~~~~~~ 235 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-R-VGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-c-eEEEECccccCCCCC
Confidence 356677899999998662 0 3211 11 11 2346777788877654 2 4444444321
Q ss_pred ---CchhhHHHHHhhcCc-ceEEEE
Q 046094 161 ---TALPYIKLYKDYGHV-VDYVNY 181 (245)
Q Consensus 161 ---~~~~~~~~~~~~~~~-vD~~ny 181 (245)
.......+.+.+.+. +|+++.
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 111223333444333 788876
No 52
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=72.36 E-value=32 Score=30.41 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCceEEEEEcC---CCCCCCccc-cC-CCCchHHHHHHHHHHHHHHHHHcCCCeEEEEecc----------CCC-CCCCh
Q 046094 67 PNVKALASLSG---WSLGSKVLH-WY-NPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEK----------FPM-RNAST 130 (245)
Q Consensus 67 ~~~kvllsiGG---~~~~~~~~~-~~-~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~----------~p~-~~~d~ 130 (245)
.++||||-+-= |........ .+ ...+.+.+.+.+.+-..+.|++..-.|+..||-+ +|. ...+.
T Consensus 70 ~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~ 149 (332)
T PF07745_consen 70 AGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNW 149 (332)
T ss_dssp TT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-H
T ss_pred CCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCH
Confidence 49999998852 322222221 11 1113333444333333455555556688899873 121 12345
Q ss_pred hhHHHHHHHHHHHHhcCC--cEEEEEeCCCCCC--chhhHHHHHhhcCcceEEEEccCCCCCCCCcchHHHHHHHHhCC
Q 046094 131 PSFAYCIGELITQLKNQS--VISVATIAPFYST--ALPYIKLYKDYGHVVDYVNYQFYTDKVRSPRGYLEAFKLRVEQF 205 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l~~~~--~~~~~~v~p~~~~--~~~~~~~~~~~~~~vD~~nyd~~~~~~~~~~~~~~~~~~~~~g~ 205 (245)
+++..|+++-.++.++.. ..+++-++...+. ...+++.+.+..--.|++..-+|-.|..+..........+...+
T Consensus 150 ~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry 228 (332)
T PF07745_consen 150 DNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRY 228 (332)
T ss_dssp HHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHh
Confidence 577777765555555422 3333333333222 12234555666788999999888888664444444444444433
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=70.91 E-value=8.9 Score=36.97 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecc------C-------CCCCCChhh--HHHHHHHHHHHHhcC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEK------F-------PMRNASTPS--FAYCIGELITQLKNQ 147 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~------~-------p~~~~d~~~--~~~ll~~Lr~~l~~~ 147 (245)
++++.-|+++|++||+-+|=-. + |...+..++ =..|++++++.+++.
T Consensus 291 ~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 291 ISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHH
Confidence 5566799999999999999210 0 111111112 367899998888764
No 54
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=68.31 E-value=29 Score=29.78 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChh
Q 046094 52 ETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTP 131 (245)
Q Consensus 52 d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~ 131 (245)
+....+.++-.|++ +|+|+|=.--.+. ...... +.+.++.| +.+++.|..||-||+-+ .+.+
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~-~~~~~~-~~~~~~~f---------~~~~~~Gv~GvKidF~~-----~d~Q 133 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG-GNVANL-EKQLDEAF---------KLYAKWGVKGVKIDFMD-----RDDQ 133 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT-TBHHHH-HCCHHHHH---------HHHHHCTEEEEEEE--S-----STSH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc-hhhHhH-HHHHHHHH---------HHHHHcCCCEEeeCcCC-----CCCH
Confidence 33456667777887 8888765432111 111111 12234444 89999999999999992 2455
Q ss_pred hHHHHHHHHHHHHhcCCcEEEE
Q 046094 132 SFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
..+++.+++-+...+.++++-.
T Consensus 134 ~~v~~y~~i~~~AA~~~Lmvnf 155 (273)
T PF10566_consen 134 EMVNWYEDILEDAAEYKLMVNF 155 (273)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHHcCcEEEe
Confidence 6777777776666666665544
No 55
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.15 E-value=27 Score=30.46 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcC-CCeEEEEeccCCCCCC------
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYH-LDGIDIDYEKFPMRNA------ 128 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~-~DGvDiDwE~~p~~~~------ 128 (245)
.+.+..+|+..++..+++||-|.+. +.|. .+.+.+++.+ .|.++|+.- .|....
T Consensus 80 ~~~i~~~~~~~~~~pvI~Si~G~~~-------------~~~~-----~~a~~~~~~g~ad~iElN~S-cPn~~~~~~~g~ 140 (310)
T PRK02506 80 LDYVLELQKKGPNKPHFLSVVGLSP-------------EETH-----TILKKIQASDFNGLVELNLS-CPNVPGKPQIAY 140 (310)
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCcH-------------HHHH-----HHHHHHhhcCCCCEEEEECC-CCCCCCcccccc
Confidence 3445555555456889999977432 2232 2235667787 899999999 885322
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 129 STPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 129 d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
|.+.+.++++++|+..+ .-+.+-++|..
T Consensus 141 d~~~~~~i~~~v~~~~~---~Pv~vKlsp~~ 168 (310)
T PRK02506 141 DFETTEQILEEVFTYFT---KPLGVKLPPYF 168 (310)
T ss_pred CHHHHHHHHHHHHHhcC---CccEEecCCCC
Confidence 34567778888887653 23455566665
No 56
>PRK14705 glycogen branching enzyme; Provisional
Probab=66.20 E-value=13 Score=38.60 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEecc------C--------CCCCCChhhH--HHHHHHHHHHHhcC
Q 046094 100 AFSSLKSIIQEYHLDGIDIDYEK------F--------PMRNASTPSF--AYCIGELITQLKNQ 147 (245)
Q Consensus 100 ~~~sl~~~l~~~~~DGvDiDwE~------~--------p~~~~d~~~~--~~ll~~Lr~~l~~~ 147 (245)
+++++.-|+++|++||+-+|=-. | |..-+.++|+ ..|++++.+.+++.
T Consensus 885 li~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 885 LVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 35666799999999999998520 1 2222233444 57999998888754
No 57
>PLN02960 alpha-amylase
Probab=66.11 E-value=20 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCeEEEE------------------eccCCCCCCChhhHHHHHHHHHHHHhc
Q 046094 101 FSSLKSIIQEYHLDGIDID------------------YEKFPMRNASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiD------------------wE~~p~~~~d~~~~~~ll~~Lr~~l~~ 146 (245)
++++.-|+++|++||+-+| |+.+|.... ...-..||++|.+.+++
T Consensus 538 lsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~-d~~Ai~fL~~lN~~v~~ 600 (897)
T PLN02960 538 LSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYV-DRDALIYLILANEMLHQ 600 (897)
T ss_pred HHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccC-CchHHHHHHHHHHHHHh
Confidence 5556699999999999998 111232221 22456677777777765
No 58
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.74 E-value=30 Score=30.44 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.6
Q ss_pred HHHHHHcCCCeEEEEec
Q 046094 105 KSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE 121 (245)
...+++.|||||+|.-=
T Consensus 155 A~ra~~aGfDgVeih~a 171 (338)
T cd04733 155 ARLAQEAGFDGVQIHAA 171 (338)
T ss_pred HHHHHHcCCCEEEEchh
Confidence 35677899999999755
No 59
>PRK12677 xylose isomerase; Provisional
Probab=65.39 E-value=26 Score=31.62 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHcCCCeEEEEecc-CCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 105 KSIIQEYHLDGIDIDYEK-FPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~-~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
++.+.+.||+||.+..++ +|-... ...-...++++|+.+...++.+++
T Consensus 37 v~~~a~~Gf~gVElh~~~l~p~~~~-~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 37 VHKLAELGAYGVTFHDDDLVPFGAT-DAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred HHHHHHhCCCEEEecccccCCCCCC-hhhhHHHHHHHHHHHHHcCCeeEE
Confidence 489999999999996441 122111 111224688999999999987654
No 60
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=65.06 E-value=49 Score=29.09 Aligned_cols=79 Identities=13% Similarity=0.311 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCC-----h-
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNAS-----T- 130 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d-----~- 130 (245)
+.+..++++ .++.++++|+|.+. +.+++ +...+++.|+|+|+|++- +|....+ .
T Consensus 91 ~~i~~~~~~-~~~pvi~sI~g~~~-------------~e~~~-----~a~~~~~agad~ielN~s-cpp~~~~~~g~~~~ 150 (334)
T PRK07565 91 ELIRRAKEA-VDIPVIASLNGSSA-------------GGWVD-----YARQIEQAGADALELNIY-YLPTDPDISGAEVE 150 (334)
T ss_pred HHHHHHHHh-cCCcEEEEeccCCH-------------HHHHH-----HHHHHHHcCCCEEEEeCC-CCCCCCCCccccHH
Confidence 344444443 36889999988321 12322 236677889999999987 5432211 1
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 046094 131 PSFAYCIGELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l~~~~~~~~~~v~p~ 158 (245)
+.+.++++++|+..+ .-+++-+.|.
T Consensus 151 ~~~~eil~~v~~~~~---iPV~vKl~p~ 175 (334)
T PRK07565 151 QRYLDILRAVKSAVS---IPVAVKLSPY 175 (334)
T ss_pred HHHHHHHHHHHhccC---CcEEEEeCCC
Confidence 236677788877652 3444544553
No 61
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=64.89 E-value=28 Score=30.71 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----------CChhhHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----------ASTPSFAYC 136 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----------~d~~~~~~l 136 (245)
...+.+.|+|.+. +.|++. +..+++.|+|||||+-- .|... .+.+-..++
T Consensus 64 e~p~~vQl~g~~p-------------~~~~~a-----A~~~~~~g~d~IdlN~g-CP~~~v~~~~~Gs~L~~~p~~~~ei 124 (333)
T PRK11815 64 EHPVALQLGGSDP-------------ADLAEA-----AKLAEDWGYDEINLNVG-CPSDRVQNGRFGACLMAEPELVADC 124 (333)
T ss_pred CCcEEEEEeCCCH-------------HHHHHH-----HHHHHhcCCCEEEEcCC-CCHHHccCCCeeeHHhcCHHHHHHH
Confidence 5678888888442 234332 27888899999999988 78631 122344567
Q ss_pred HHHHHHHH
Q 046094 137 IGELITQL 144 (245)
Q Consensus 137 l~~Lr~~l 144 (245)
++++|++.
T Consensus 125 v~avr~~v 132 (333)
T PRK11815 125 VKAMKDAV 132 (333)
T ss_pred HHHHHHHc
Confidence 77777765
No 62
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.18 E-value=37 Score=30.60 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC--------------CChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN--------------ASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~--------------~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
.+...++|+.-++ +.++.+.=.||.|++- -|... -+.+....+|++|+.+|++.++...++
T Consensus 149 k~d~y~~FA~YLa----~Vv~~~~~~GI~f~~I-sP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~ 223 (384)
T PF14587_consen 149 KPDNYDAFADYLA----DVVKHYKKWGINFDYI-SPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKIS 223 (384)
T ss_dssp -TT-HHHHHHHHH----HHHHHHHCTT--EEEE-E--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEE
T ss_pred ChhHHHHHHHHHH----HHHHHHHhcCCcccee-CCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 4567778866554 4444444468888876 34421 134577899999999999988755443
No 63
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=63.41 E-value=32 Score=30.19 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----------CChhhHHH
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----------ASTPSFAY 135 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----------~d~~~~~~ 135 (245)
....+.+.|+|.+. +.|++. ...+.++|+|+|||+-- .|... .+.+-..+
T Consensus 53 ~e~p~~vQl~g~~p-------------~~~~~a-----A~~~~~~g~d~IDlN~G-CP~~~v~~~g~Gs~Ll~~p~~~~~ 113 (318)
T TIGR00742 53 EESPVALQLGGSDP-------------NDLAKC-----AKIAEKRGYDEINLNVG-CPSDRVQNGNFGACLMGNADLVAD 113 (318)
T ss_pred CCCcEEEEEccCCH-------------HHHHHH-----HHHHHhCCCCEEEEECC-CCHHHhCCCCeehHhhcCHHHHHH
Confidence 35678888888432 233332 37788899999999998 88632 13345567
Q ss_pred HHHHHHHHH
Q 046094 136 CIGELITQL 144 (245)
Q Consensus 136 ll~~Lr~~l 144 (245)
+++++|++.
T Consensus 114 iv~av~~~~ 122 (318)
T TIGR00742 114 CVKAMQEAV 122 (318)
T ss_pred HHHHHHHHh
Confidence 888888776
No 64
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=63.29 E-value=1e+02 Score=26.95 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=51.3
Q ss_pred HHHHHHHhC-CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----CChh
Q 046094 58 SVAAVKARH-PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----ASTP 131 (245)
Q Consensus 58 ~~~~lk~~~-~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----~d~~ 131 (245)
.+..+++.. .+..+++||+|..... ....-+.|++ +.+.+.. ..|+++|+.- .|... .+.+
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~~------~~~~~~d~~~-----~~~~~~~-~ad~ielN~s-cP~~~g~~~~~~~~ 183 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDTP------LEDAVEDYVI-----GVRKLGP-YADYLVVNVS-SPNTPGLRDLQGKE 183 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCCc------ccccHHHHHH-----HHHHHHh-hCCEEEEECC-CCCCCccccccCHH
Confidence 344555433 3688999998854210 1222233322 1133333 3999999997 78642 2445
Q ss_pred hHHHHHHHHHHHHhc--CCcEEEEEeCCC
Q 046094 132 SFAYCIGELITQLKN--QSVISVATIAPF 158 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~--~~~~~~~~v~p~ 158 (245)
.+.++++++|+.... ...-+.+-+.|.
T Consensus 184 ~~~~iv~av~~~~~~~~~~~Pv~vKl~~~ 212 (327)
T cd04738 184 ALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 788899999998752 123445555554
No 65
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.01 E-value=85 Score=27.77 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=52.7
Q ss_pred HHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----CChhhH
Q 046094 59 VAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----ASTPSF 133 (245)
Q Consensus 59 ~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----~d~~~~ 133 (245)
+..+++...++.|++||+|.... .....-+.|++- ++.+.. +.|+++++.- .|... .+.+.+
T Consensus 128 ~~~l~~~~~~~pvivsI~~~~~~------~~~~~~~d~~~~-----~~~~~~-~ad~lelN~s-cP~~~g~~~~~~~~~~ 194 (344)
T PRK05286 128 AERLKKAYRGIPLGINIGKNKDT------PLEDAVDDYLIC-----LEKLYP-YADYFTVNIS-SPNTPGLRDLQYGEAL 194 (344)
T ss_pred HHHHHHhcCCCcEEEEEecCCCC------CcccCHHHHHHH-----HHHHHh-hCCEEEEEcc-CCCCCCcccccCHHHH
Confidence 34444332468899999885321 112334445322 244444 4999999998 78642 244578
Q ss_pred HHHHHHHHHHHhcC--CcEEEEEeCCCC
Q 046094 134 AYCIGELITQLKNQ--SVISVATIAPFY 159 (245)
Q Consensus 134 ~~ll~~Lr~~l~~~--~~~~~~~v~p~~ 159 (245)
.++++++|+..+.. ..-+++-+.|..
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~ 222 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDL 222 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCC
Confidence 88999999988631 234555556553
No 66
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.97 E-value=1e+02 Score=26.63 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=45.4
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHc---CCCeEEEEeccCCCCC------CChhhHHHHH
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEY---HLDGIDIDYEKFPMRN------ASTPSFAYCI 137 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~---~~DGvDiDwE~~p~~~------~d~~~~~~ll 137 (245)
++..+++||+|. .+.|++. .+.+.+. +.|+|||+.- .|... .+.+.+.+++
T Consensus 90 ~~~pvivsi~g~--------------~~~~~~~-----~~~~~~~~~~~ad~ielN~s-CPn~~~~~~~~~~~~~~~~i~ 149 (294)
T cd04741 90 SAKPFFISVTGS--------------AEDIAAM-----YKKIAAHQKQFPLAMELNLS-CPNVPGKPPPAYDFDATLEYL 149 (294)
T ss_pred cCCeEEEECCCC--------------HHHHHHH-----HHHHHhhccccccEEEEECC-CCCCCCcccccCCHHHHHHHH
Confidence 467789999763 1233322 2445554 6999999999 88742 2455777888
Q ss_pred HHHHHHHhcCCcEEEEEeCCCC
Q 046094 138 GELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 138 ~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+++|+..+ .-+++-++|..
T Consensus 150 ~~v~~~~~---iPv~vKl~p~~ 168 (294)
T cd04741 150 TAVKAAYS---IPVGVKTPPYT 168 (294)
T ss_pred HHHHHhcC---CCEEEEeCCCC
Confidence 88887653 34556667754
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=61.04 E-value=19 Score=35.37 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEe-ccC-------------CCCC--CChhhHHHHHHHHHHHHhcC
Q 046094 100 AFSSLKSIIQEYHLDGIDIDY-EKF-------------PMRN--ASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 100 ~~~sl~~~l~~~~~DGvDiDw-E~~-------------p~~~--~d~~~~~~ll~~Lr~~l~~~ 147 (245)
+++++.-|++++++||+-+|= .+. |... .+...-..|++++++.+++.
T Consensus 385 l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 385 LVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 356667999999999999993 100 1100 11123467999999888764
No 68
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=60.90 E-value=22 Score=34.21 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCeEEEEec-cC-------------CCCCC--ChhhHHHHHHHHHHHHhcC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYE-KF-------------PMRNA--STPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE-~~-------------p~~~~--d~~~~~~ll~~Lr~~l~~~ 147 (245)
++++.-|+++|++||+-+|-- +. |...+ ....=..|++++++.+++.
T Consensus 277 ~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 277 VANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 566679999999999999952 01 10000 0112356888888888753
No 69
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=60.57 E-value=15 Score=30.66 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 104 LKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 104 l~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
..+.+++.|||||++.+. ++ .-++++|+.+.+.++.++..
T Consensus 19 ~~~~~~e~G~~~vEl~~~-~~----------~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 19 RFAAAAQAGFTGVEYLFP-YD----------WDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHcCCCEEEecCC-cc----------CCHHHHHHHHHHcCCeEEEE
Confidence 348999999999999764 31 12677888888888876553
No 70
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=59.60 E-value=42 Score=30.25 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHcCCCeEEEEecc-CCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEK-FPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~-~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.+.+.|||||.+...+ +|.... ...-..-++++|+.+.+.|+.++.
T Consensus 39 ~~la~~GfdgVE~~~~dl~P~~~~-~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 39 HKLAELGAYGVTFHDDDLIPFGAP-PQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHhCCCEEEecccccCCCCCC-hhHHHHHHHHHHHHHHHhCCeEEE
Confidence 88999999999997432 232221 112234578999999999987554
No 71
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.47 E-value=57 Score=28.44 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----------CChhhHHH
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----------ASTPSFAY 135 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----------~d~~~~~~ 135 (245)
.+..+++.++|.+. +.|++. +..+++.|+|||||+-- .|... .+.+-..+
T Consensus 61 ~~~p~i~ql~g~~~-------------~~~~~a-----a~~~~~~G~d~IelN~g-cP~~~~~~~~~Gs~l~~~~~~~~e 121 (319)
T TIGR00737 61 DETPISVQLFGSDP-------------DTMAEA-----AKINEELGADIIDINMG-CPVPKITKKGAGSALLRDPDLIGK 121 (319)
T ss_pred ccceEEEEEeCCCH-------------HHHHHH-----HHHHHhCCCCEEEEECC-CCHHHhcCCCccchHhCCHHHHHH
Confidence 35778899988442 233332 26778899999999987 77421 11223445
Q ss_pred HHHHHHHHH
Q 046094 136 CIGELITQL 144 (245)
Q Consensus 136 ll~~Lr~~l 144 (245)
+++++|+..
T Consensus 122 i~~~vr~~~ 130 (319)
T TIGR00737 122 IVKAVVDAV 130 (319)
T ss_pred HHHHHHhhc
Confidence 666676655
No 72
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=58.73 E-value=30 Score=27.74 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHcCCCe---EEEEeccCCCCCC-ChhhHHHHHHHHHH
Q 046094 106 SIIQEYHLDG---IDIDYEKFPMRNA-STPSFAYCIGELIT 142 (245)
Q Consensus 106 ~~l~~~~~DG---vDiDwE~~p~~~~-d~~~~~~ll~~Lr~ 142 (245)
+.+++++++. +-+|+| ...... -.+...+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~lD~E-~~~~~~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 81 NTAKSLGLSKNTVMVADME-DSSSSGNATANVNAFWQTMKA 120 (192)
T ss_pred HHHHHcCCCCCCceEEEee-cCCCcchHHHHHHHHHHHHHH
Confidence 6677777653 568999 333211 12244566666665
No 73
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=58.00 E-value=32 Score=30.46 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=41.8
Q ss_pred HHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEec---cCCCCCCChhhHHH
Q 046094 59 VAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE---KFPMRNASTPSFAY 135 (245)
Q Consensus 59 ~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE---~~p~~~~d~~~~~~ 135 (245)
++.+|+..|++||+|-+..... ...-+.| + +.++++| +|+|.- .||.-.+.-+++..
T Consensus 160 ~~AVr~~~p~~kV~lH~~~~~~---------~~~~~~~----f----~~l~~~g---~d~DviGlSyYP~w~~~l~~l~~ 219 (332)
T PF07745_consen 160 IKAVREVDPNIKVMLHLANGGD---------NDLYRWF----F----DNLKAAG---VDFDVIGLSYYPFWHGTLEDLKN 219 (332)
T ss_dssp HHHHHTHSSTSEEEEEES-TTS---------HHHHHHH----H----HHHHHTT---GG-SEEEEEE-STTST-HHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCc---------hHHHHHH----H----HHHHhcC---CCcceEEEecCCCCcchHHHHHH
Confidence 4567778999999999876321 1111223 3 5666654 555544 26876556778899
Q ss_pred HHHHHHHHHhc
Q 046094 136 CIGELITQLKN 146 (245)
Q Consensus 136 ll~~Lr~~l~~ 146 (245)
-++.|++++++
T Consensus 220 ~l~~l~~ry~K 230 (332)
T PF07745_consen 220 NLNDLASRYGK 230 (332)
T ss_dssp HHHHHHHHHT-
T ss_pred HHHHHHHHhCC
Confidence 99999999965
No 74
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=57.97 E-value=82 Score=27.33 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcC-CCeEEEEeccCCCCCCC-hhhHHH
Q 046094 58 SVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYH-LDGIDIDYEKFPMRNAS-TPSFAY 135 (245)
Q Consensus 58 ~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~-~DGvDiDwE~~p~~~~d-~~~~~~ 135 (245)
.+..++++ +..++.++-.+... +-+-.++.| +.+.+.|.+-+++.+ +|||-++-- --....+ .+.=..
T Consensus 50 ~~~~a~~~--g~e~vp~~~a~A~P------~G~v~~~ay-e~l~~eil~~l~~agp~Dgv~L~LH-GAmv~e~~~D~EG~ 119 (292)
T PF07364_consen 50 FLDAAEAQ--GWEVVPLLWAAAEP------GGPVTREAY-ERLRDEILDRLRAAGPLDGVLLDLH-GAMVAEGYDDGEGD 119 (292)
T ss_dssp HHHHHHHT--T-EEEEEEEEEE-S------EE-B-HHHH-HHHHHHHHHHHHHS---SEEEEEE--S---BSS-SSHHHH
T ss_pred HHHHHHHC--CCEEEeeEeeeecC------CCcccHHHH-HHHHHHHHHHHHhcCCcCEEEEecc-CcEeecCCCCchHH
Confidence 33444444 67777665443321 225667776 566777889999986 999999987 2332111 113346
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcceEEE-EccC
Q 046094 136 CIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVN-YQFY 184 (245)
Q Consensus 136 ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~n-yd~~ 184 (245)
|++++|+.+++. ..+.++.-+.. ++..++.+..|.+. |..|
T Consensus 120 Ll~rvR~~vGp~-vpI~~tlDlHa-------Nvs~~mv~~ad~~~~yrty 161 (292)
T PF07364_consen 120 LLRRVRAIVGPD-VPIAATLDLHA-------NVSPRMVEAADIIVGYRTY 161 (292)
T ss_dssp HHHHHHHHHTTT-SEEEEEE-TT-----------HHHHHH-SEEEE---S
T ss_pred HHHHHHHHhCCC-CeEEEEeCCCC-------CccHHHHHhCCEEEEcCCC
Confidence 999999999875 44444443332 22366777888886 5544
No 75
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=57.35 E-value=1.1e+02 Score=25.50 Aligned_cols=72 Identities=11% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCC-CchHHHHHHHHHHHHHHHHHcC--CCeEEEEeccCCCCCCChhh
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNP-RNPQIWISNAFSSLKSIIQEYH--LDGIDIDYEKFPMRNASTPS 132 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~-~~r~~fi~~~~~sl~~~l~~~~--~DGvDiDwE~~p~~~~d~~~ 132 (245)
...++.+|+..|++|+++. +.+ +.++ .+++++.+ +++-+++.| +|||-+-+- +.....+.+.
T Consensus 106 ~~af~~ar~~~P~a~l~~N--dy~-------~~~~~~k~~~~~~-----~v~~l~~~g~~iDgiGlQ~H-~~~~~~~~~~ 170 (254)
T smart00633 106 EKAFRYAREADPDAKLFYN--DYN-------TEEPNAKRQAIYE-----LVKKLKAKGVPIDGIGLQSH-LSLGSPNIAE 170 (254)
T ss_pred HHHHHHHHHhCCCCEEEEe--ccC-------CcCccHHHHHHHH-----HHHHHHHCCCccceeeeeee-ecCCCCCHHH
Confidence 4666788888999999885 221 1112 44554422 224554443 799998664 3222222345
Q ss_pred HHHHHHHHHH
Q 046094 133 FAYCIGELIT 142 (245)
Q Consensus 133 ~~~ll~~Lr~ 142 (245)
+.+.|+++.+
T Consensus 171 ~~~~l~~~~~ 180 (254)
T smart00633 171 IRAALDRFAS 180 (254)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 76
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=57.26 E-value=58 Score=29.10 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=13.4
Q ss_pred HHHHHHcCCCeEEEEec
Q 046094 105 KSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE 121 (245)
...+++-|||||.|.=-
T Consensus 165 A~rA~~AGfDGVEIh~a 181 (362)
T PRK10605 165 IANAREAGFDLVELHSA 181 (362)
T ss_pred HHHHHHcCCCEEEEccc
Confidence 36677799999999744
No 77
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.68 E-value=45 Score=29.90 Aligned_cols=16 Identities=6% Similarity=-0.083 Sum_probs=13.1
Q ss_pred HHHHHcCCCeEEEEec
Q 046094 106 SIIQEYHLDGIDIDYE 121 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE 121 (245)
..+++-|||||+|.--
T Consensus 157 ~ra~~aGfDgVEih~a 172 (370)
T cd02929 157 LRARDAGFDIVYVYAA 172 (370)
T ss_pred HHHHHcCCCEEEEccc
Confidence 5666789999999866
No 78
>PRK01060 endonuclease IV; Provisional
Probab=54.67 E-value=33 Score=28.94 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=30.9
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcE
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVI 150 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~ 150 (245)
.+.+++.|||||+|.-+ -|........-...++++|+.+.+.++.
T Consensus 18 l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 18 VAEAAEIGANAFMIFTG-NPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHcCCCEEEEECC-CCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 38999999999999766 3442211122334588888888888764
No 79
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=54.42 E-value=25 Score=29.75 Aligned_cols=47 Identities=9% Similarity=-0.036 Sum_probs=31.5
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChh-hHHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTP-SFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~-~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.++++|||||+|... .+...-+.. -...-++++++.+.+.++.++.
T Consensus 23 ~~~~~~G~~~VEl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVD-ETDDRLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHcCCCEEEEecC-CccchhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 8999999999999755 222100011 1245688899999998876543
No 80
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=54.17 E-value=47 Score=30.14 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeccCCCCC----CC---hh----hHHHHHHHHHHHHhcCCcEEEEE
Q 046094 99 NAFSSLKSIIQEYHLDGIDIDYEKFPMRN----AS---TP----SFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 99 ~~~~sl~~~l~~~~~DGvDiDwE~~p~~~----~d---~~----~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
.+.+.+.++++++|+|.|-+|+. ..... .. .. .+.+++++||++++. +++..+
T Consensus 170 ~l~~~i~~ll~~~gidYiK~D~n-~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~--v~iE~C 233 (394)
T PF02065_consen 170 YLFEVIDRLLREWGIDYIKWDFN-RDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD--VLIENC 233 (394)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-T-S-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT--SEEEE-
T ss_pred HHHHHHHHHHHhcCCCEEEeccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC--cEEEec
Confidence 33556679999999999999998 54321 11 11 344588888887754 444443
No 81
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=51.65 E-value=20 Score=27.21 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe
Q 046094 99 NAFSSLKSIIQEYHLDGIDIDY 120 (245)
Q Consensus 99 ~~~~sl~~~l~~~~~DGvDiDw 120 (245)
-+...|.+++++|.+|||=+||
T Consensus 111 ~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 111 FLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred HHHHHHHHHHHcCCCCEEEecC
Confidence 3456667999999999999986
No 82
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=51.41 E-value=40 Score=34.02 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 94 QIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 94 ~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
....+-+++++.-|+++|++||+-||--
T Consensus 471 ~~Vrk~iiDsl~~W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 471 RMMAKLIVDSLVVWAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEech
Confidence 3344555788889999999999999987
No 83
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=50.99 E-value=1.7e+02 Score=25.61 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC-CCCC-----h
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM-RNAS-----T 130 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~-~~~d-----~ 130 (245)
+.+..+|++ .+..|++||.|.+ .+.|.+ +...+++.|+|+++|+.- .|. ..+. .
T Consensus 89 ~~i~~~~~~-~~~pvi~si~g~~-------------~~~~~~-----~a~~~~~~gad~iElN~s-~~~~~~~~~g~~~~ 148 (325)
T cd04739 89 ELIRRAKRA-VSIPVIASLNGVS-------------AGGWVD-----YARQIEEAGADALELNIY-ALPTDPDISGAEVE 148 (325)
T ss_pred HHHHHHHhc-cCCeEEEEeCCCC-------------HHHHHH-----HHHHHHhcCCCEEEEeCC-CCCCCCCcccchHH
Confidence 344444432 3678999997622 123322 236778889999999997 543 2211 1
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 131 PSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+.+.++++++|+..+ .-+++-+.|..
T Consensus 149 ~~~~eiv~~v~~~~~---iPv~vKl~p~~ 174 (325)
T cd04739 149 QRYLDILRAVKSAVT---IPVAVKLSPFF 174 (325)
T ss_pred HHHHHHHHHHHhccC---CCEEEEcCCCc
Confidence 245567777776652 34455555543
No 84
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=50.33 E-value=42 Score=23.45 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=38.5
Q ss_pred EEEEcCCCCCCCcccc------CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHh
Q 046094 72 LASLSGWSLGSKVLHW------YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLK 145 (245)
Q Consensus 72 llsiGG~~~~~~~~~~------~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~ 145 (245)
.++|||-..+--.|-. .++..|.+|.+.+...+-.++++|+- =-+.=|+ +...-++|++.|-+.|+
T Consensus 11 ~lAiGG~~g~~~Wfvtt~~v~~~~~~~~~eF~k~i~~~~d~~l~~Y~~-l~N~V~~-------~N~~HIRfLk~lGA~f~ 82 (86)
T PF11090_consen 11 PLAIGGNNGGCLWFVTTNKVKSLTKKERREFRKLIKEYLDKMLKQYPV-LWNFVWV-------GNKSHIRFLKSLGAVFH 82 (86)
T ss_pred EEEEccccCCeEEEEECcHHhhcCHhhhHHHHHHHHHHHHHHHHHhhh-eeEEEEe-------CCHHHHHHHHhcCcEEc
Confidence 5899997733222321 23455667876665455555566543 2233333 34477888888877665
Q ss_pred cC
Q 046094 146 NQ 147 (245)
Q Consensus 146 ~~ 147 (245)
++
T Consensus 83 ~e 84 (86)
T PF11090_consen 83 NE 84 (86)
T ss_pred cc
Confidence 43
No 85
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=50.16 E-value=43 Score=27.88 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhCCCceEE--EEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChh
Q 046094 54 LTPDSVAAVKARHPNVKAL--ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTP 131 (245)
Q Consensus 54 ~~~~~~~~lk~~~~~~kvl--lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~ 131 (245)
.+.+.+..+|+.+..+-+| +|=||--. . ++. +-.|++++++.|+.=|-|.-- .-++.....
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHS------------h---~~H-l~al~~~a~~~gv~~V~vH~f-~DGRDt~P~ 77 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHS------------H---IDH-LFALIKLAKKQGVKKVYVHAF-TDGRDTPPK 77 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS-----------------HHH-HHHHHHHHHHTT-SEEEEEEE-E-SSSS-TT
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccc------------c---HHH-HHHHHHHHHHcCCCEEEEEEe-cCCCCCCcc
Confidence 3455666666654434443 55555321 1 333 235679999999888877655 344444455
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 046094 132 SFAYCIGELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~~~~~~~v~p~ 158 (245)
....+|++|.+.+.+.+..-+++++..
T Consensus 78 S~~~yl~~l~~~l~~~~~g~IAsv~GR 104 (223)
T PF06415_consen 78 SALKYLEELEEKLAEIGIGRIASVSGR 104 (223)
T ss_dssp THHHHHHHHHHHHHHHTCTEEEEEEEC
T ss_pred hHHHHHHHHHHHHHhhCCceEEEEece
Confidence 788899999998887544344554444
No 86
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=50.08 E-value=46 Score=28.14 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=28.2
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcC-CcEEEE
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQ-SVISVA 153 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~-~~~~~~ 153 (245)
.+.+++.|||||+|... .+........=..-++++|+.+.+. +..+++
T Consensus 16 l~~a~~~G~d~vEl~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 16 LKRAKEIGFDTVAMFLG-NPRSWLSRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred HHHHHHcCCCEEEEEcC-CCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 39999999999998765 3321110000124567777777666 444443
No 87
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=49.96 E-value=1.4e+02 Score=27.94 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.++.||+. ++. -+|||=.+.+..... ..-..+.+..++ .++.+++.||+-|.+|.- +-...++.+.+
T Consensus 268 t~e~L~~Lk~~--Gv~-RISIGvQS~~d~vLk~igR~ht~e~v~~-----ai~~ar~~Gf~~In~DLI-~GLPgEt~ed~ 338 (488)
T PRK08207 268 TEEKLEVLKKY--GVD-RISINPQTMNDETLKAIGRHHTVEDIIE-----KFHLAREMGFDNINMDLI-IGLPGEGLEEV 338 (488)
T ss_pred CHHHHHHHHhc--CCC-eEEEcCCcCCHHHHHHhCCCCCHHHHHH-----HHHHHHhCCCCeEEEEEE-eCCCCCCHHHH
Confidence 35666777665 443 466765554322222 222233344333 248999999998988887 54334445566
Q ss_pred HHHHHHHHHHHhcCC
Q 046094 134 AYCIGELITQLKNQS 148 (245)
Q Consensus 134 ~~ll~~Lr~~l~~~~ 148 (245)
...++.+.+ ++...
T Consensus 339 ~~tl~~l~~-L~pd~ 352 (488)
T PRK08207 339 KHTLEEIEK-LNPES 352 (488)
T ss_pred HHHHHHHHh-cCcCE
Confidence 666666653 44443
No 88
>PLN03244 alpha-amylase; Provisional
Probab=49.92 E-value=48 Score=32.97 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 046094 101 FSSLKSIIQEYHLDGIDID 119 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiD 119 (245)
++++.-|+.+|++||+-+|
T Consensus 513 Lsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 513 ISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHHHHHhCcCcceee
Confidence 5666799999999999998
No 89
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=48.89 E-value=1.6e+02 Score=26.09 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.++.+++. ++. -+|||=.+....... ..-..+.+..++ .++.+++.|++-|.+|.- +-...++.+.+
T Consensus 98 t~e~l~~l~~~--G~~-rvsiGvqS~~d~~L~~l~R~~~~~~~~~-----ai~~l~~~g~~~v~~dli-~GlPgqt~e~~ 168 (374)
T PRK05799 98 TEEKLKILKSM--GVN-RLSIGLQAWQNSLLKYLGRIHTFEEFLE-----NYKLARKLGFNNINVDLM-FGLPNQTLEDW 168 (374)
T ss_pred CHHHHHHHHHc--CCC-EEEEECccCCHHHHHHcCCCCCHHHHHH-----HHHHHHHcCCCcEEEEee-cCCCCCCHHHH
Confidence 35677788776 543 466665544322222 222223333332 238899999997777777 54434445667
Q ss_pred HHHHHHHHH
Q 046094 134 AYCIGELIT 142 (245)
Q Consensus 134 ~~ll~~Lr~ 142 (245)
.+.++.+.+
T Consensus 169 ~~~l~~~~~ 177 (374)
T PRK05799 169 KETLEKVVE 177 (374)
T ss_pred HHHHHHHHh
Confidence 666666654
No 90
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=48.81 E-value=1.9e+02 Score=25.51 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----CChhh
Q 046094 58 SVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----ASTPS 132 (245)
Q Consensus 58 ~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----~d~~~ 132 (245)
.+..++++..++.+++|||+.... .....-+.|++- ++.+.++ .|.+.|+.- .|... ++.+.
T Consensus 124 ~l~~i~~~~~~~~i~vsi~~~~~~------~~~~~~~dy~~~-----~~~~~~~-ad~iElNlS-cPn~~~~~~~~~~~~ 190 (335)
T TIGR01036 124 LVERLKRARYKGPIGINIGKNKDT------PSEDAKEDYAAC-----LRKLGPL-ADYLVVNVS-SPNTPGLRDLQYKAE 190 (335)
T ss_pred HHHHHhhccCCCcEEEEEeCCCCC------CcccCHHHHHHH-----HHHHhhh-CCEEEEEcc-CCCCCCcccccCHHH
Confidence 345565555578899999875311 122334455322 2344443 999999998 78642 34557
Q ss_pred HHHHHHHHHHHHhc----CCcEEEEEeCCCCC
Q 046094 133 FAYCIGELITQLKN----QSVISVATIAPFYS 160 (245)
Q Consensus 133 ~~~ll~~Lr~~l~~----~~~~~~~~v~p~~~ 160 (245)
+.++++.+|+..+. ...-+.+-++|...
T Consensus 191 ~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~ 222 (335)
T TIGR01036 191 LRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT 222 (335)
T ss_pred HHHHHHHHHHHHHhhhhccCCceEEEeCCCCC
Confidence 88889999887752 12445566677654
No 91
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.66 E-value=41 Score=29.24 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
..++.+++ ....+.+-|||||+|.--
T Consensus 138 ~~i~~~~~-aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 138 QIIEDFAA-AARRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHHH-HHHHHHHcCCCEEEEcch
Confidence 33444433 234556689999999864
No 92
>PRK09989 hypothetical protein; Provisional
Probab=48.22 E-value=54 Score=27.40 Aligned_cols=38 Identities=8% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
+.++++|||||+|-.. ++. -.+++|+.+.+.++.++..
T Consensus 22 ~~~~~~Gfd~VEl~~~-~~~----------~~~~~~~~l~~~Gl~v~~~ 59 (258)
T PRK09989 22 AAARKAGFDAVEFLFP-YDY----------STLQIQKQLEQNHLTLALF 59 (258)
T ss_pred HHHHHcCCCEEEECCc-ccC----------CHHHHHHHHHHcCCcEEEe
Confidence 8999999999999543 221 1578999999998876653
No 93
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.56 E-value=1.8e+02 Score=25.77 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.++.||+. ++. .+|||=.+.+..... ..-..+.+..++ .++.+++.|++-|.+|+- +-...+..+.+
T Consensus 99 t~e~l~~l~~~--Gv~-risiGvqS~~~~~l~~lgR~~~~~~~~~-----ai~~l~~~G~~~v~~dli-~GlPgqt~~~~ 169 (360)
T TIGR00539 99 TAEWCKGLKGA--GIN-RLSLGVQSFRDDKLLFLGRQHSAKNIAP-----AIETALKSGIENISLDLM-YGLPLQTLNSL 169 (360)
T ss_pred CHHHHHHHHHc--CCC-EEEEecccCChHHHHHhCCCCCHHHHHH-----HHHHHHHcCCCeEEEecc-CCCCCCCHHHH
Confidence 35667777765 543 456655443222222 121223333322 248899999998888888 64444444566
Q ss_pred HHHHHHHHH
Q 046094 134 AYCIGELIT 142 (245)
Q Consensus 134 ~~ll~~Lr~ 142 (245)
...++.+.+
T Consensus 170 ~~~l~~~~~ 178 (360)
T TIGR00539 170 KEELKLAKE 178 (360)
T ss_pred HHHHHHHHc
Confidence 555555543
No 94
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=47.49 E-value=44 Score=29.10 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=49.6
Q ss_pred HHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC-----------CC
Q 046094 61 AVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN-----------AS 129 (245)
Q Consensus 61 ~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~-----------~d 129 (245)
.+.......++.+-|+|.+ + +.+++. +..+.++++|||||+-- .|... .+
T Consensus 46 ~~~~~~~~~p~~~Ql~g~~----------~---~~~~~a-----a~~~~~~~~~~IDlN~G-CP~~~v~~~g~Ga~Ll~~ 106 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGND----------P---EDLAEA-----AEIVAELGFDGIDLNMG-CPAPKVTKGGAGAALLKD 106 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S-----------H---HHHHHH-----HHHHCCTT-SEEEEEE----SHHHHHCT-GGGGGC-
T ss_pred cccccccccceeEEEeecc----------H---HHHHHH-----HHhhhccCCcEEeccCC-CCHHHHhcCCcChhhhcC
Confidence 3333333468888888843 1 223222 27788899999999999 88731 24
Q ss_pred hhhHHHHHHHHHHHHhcCCcEEEEEeCCCCC-CchhhHHHHHhhcCc-ceEEEEccC
Q 046094 130 TPSFAYCIGELITQLKNQSVISVATIAPFYS-TALPYIKLYKDYGHV-VDYVNYQFY 184 (245)
Q Consensus 130 ~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~-~~~~~~~~~~~~~~~-vD~~nyd~~ 184 (245)
.+....+++++|+..+ .-+++-+-...+ ......++.+.+.+. ++++.+.--
T Consensus 107 p~~~~~iv~~~~~~~~---~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 107 PDLLAEIVKAVRKAVP---IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp HHHHHHHHHHHHHH-S---SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred hHHhhHHHHhhhcccc---cceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 5577888888888775 334443322222 122223333333322 788876544
No 95
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=47.48 E-value=1.6e+02 Score=26.22 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.+..+|+. ++. -+|||-.+.+...... .-....+..++ .++.+++.|++-|.+|.- +-...+..+.+
T Consensus 102 t~e~l~~lk~~--G~n-risiGvQS~~d~vL~~l~R~~~~~~~~~-----ai~~lr~~G~~~v~~dlI-~GlPgqt~e~~ 172 (353)
T PRK05904 102 TQSQINLLKKN--KVN-RISLGVQSMNNNILKQLNRTHTIQDSKE-----AINLLHKNGIYNISCDFL-YCLPILKLKDL 172 (353)
T ss_pred CHHHHHHHHHc--CCC-EEEEecccCCHHHHHHcCCCCCHHHHHH-----HHHHHHHcCCCcEEEEEe-ecCCCCCHHHH
Confidence 35677788775 554 4677765543332222 22233344333 348999999997777777 43333445566
Q ss_pred HHHHHHHHH
Q 046094 134 AYCIGELIT 142 (245)
Q Consensus 134 ~~ll~~Lr~ 142 (245)
.+.++.+.+
T Consensus 173 ~~tl~~~~~ 181 (353)
T PRK05904 173 DEVFNFILK 181 (353)
T ss_pred HHHHHHHHh
Confidence 666666543
No 96
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=47.43 E-value=54 Score=28.95 Aligned_cols=34 Identities=26% Similarity=0.620 Sum_probs=24.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM 125 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~ 125 (245)
..+|+.|+=|. +.+.+++.+.|+||+-+|+-+ |.
T Consensus 134 ftnp~a~~ww~----~~~~~~~~~~Gvdg~w~D~~E-p~ 167 (339)
T cd06602 134 FLNPNTQEWWT----DEIKDFHDQVPFDGLWIDMNE-PS 167 (339)
T ss_pred CCCHHHHHHHH----HHHHHHHhcCCCcEEEecCCC-Cc
Confidence 46777777662 233467888999999999883 53
No 97
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=47.14 E-value=11 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHhCCCCCCeeeee-ccCCCccc
Q 046094 197 AFKLRVEQFGREKMVPSY-EVNGRGIQ 222 (245)
Q Consensus 197 ~~~~~~~g~~~~Kl~lGv-p~yG~~~~ 222 (245)
+..++.+|+|++.||||+ |-+-|.+|
T Consensus 80 a~eLve~GVpk~dIVLgF~~P~~R~~T 106 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGFHPPEVRQYT 106 (111)
T ss_dssp HHHHHHTT--GGGEEETTS-GGGGCCS
T ss_pred HHHHHHcCCCHHHEEEccCCccccccc
Confidence 357889999999999994 33334444
No 98
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=46.42 E-value=48 Score=29.14 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecc-C-------CCC--CCC--------hh-hHHHHHHHHHHHHhcCCcEEEEEe
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYEK-F-------PMR--NAS--------TP-SFAYCIGELITQLKNQSVISVATI 155 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE~-~-------p~~--~~d--------~~-~~~~ll~~Lr~~l~~~~~~~~~~v 155 (245)
..++.+++. ...+++-|||||+|.--+ | |.. ..| +. -..+.++++|+++++. ..+.+-+
T Consensus 151 ~ii~~~~~a-A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d-~~v~vri 228 (336)
T cd02932 151 EVVDAFVAA-ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED-KPLFVRI 228 (336)
T ss_pred HHHHHHHHH-HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC-ceEEEEE
Confidence 445554433 345566899999998531 1 321 111 11 2356777888877544 3334444
Q ss_pred CCCCC-----CchhhHHHHHhhcCc-ceEEEEc
Q 046094 156 APFYS-----TALPYIKLYKDYGHV-VDYVNYQ 182 (245)
Q Consensus 156 ~p~~~-----~~~~~~~~~~~~~~~-vD~~nyd 182 (245)
.+... .......+.+.+.+. +||+..-
T Consensus 229 ~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 229 SATDWVEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 43211 111222333344333 7888753
No 99
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.05 E-value=63 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=25.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM 125 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~ 125 (245)
..+|+.|+-|.+ .+..++.+.|+||+=+|+-+ |.
T Consensus 129 ftnp~a~~ww~~----~~~~~~~~~gvdg~w~D~~E-p~ 162 (317)
T cd06600 129 FTNPDTREWWAG----LFSEWLNSQGVDGIWLDMNE-PS 162 (317)
T ss_pred CCChHHHHHHHH----HHHHHhhcCCCceEEeeCCC-Cc
Confidence 478888887733 34577779999999999873 53
No 100
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=45.97 E-value=92 Score=26.95 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHH-HHcCCCeEEEEeccCCCCCCC---------hhhHHHHHHHHHHHHhcCCcEEEEEeC-------
Q 046094 94 QIWISNAFSSLKSII-QEYHLDGIDIDYEKFPMRNAS---------TPSFAYCIGELITQLKNQSVISVATIA------- 156 (245)
Q Consensus 94 ~~fi~~~~~sl~~~l-~~~~~DGvDiDwE~~p~~~~d---------~~~~~~ll~~Lr~~l~~~~~~~~~~v~------- 156 (245)
++||..-+ .++ ..-|.|..-|==| .-+-..- -+.+.+|+.++|+.+++...++-++=-
T Consensus 4 rrfILHYA----~La~~aggVdaF~IGSE-l~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAADWsEY~~~~ 78 (299)
T PF13547_consen 4 RRFILHYA----HLAAAAGGVDAFCIGSE-LRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAADWSEYFGYQ 78 (299)
T ss_pred HHHHHHHH----HHHHhcCCCcEEEEchh-hhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEeccCHHhcCcC
Confidence 35655554 677 4556777777666 4331111 136899999999999888887777410
Q ss_pred CCCCCchhhHHHHHhh--cCcceEEEEccCCC
Q 046094 157 PFYSTALPYIKLYKDY--GHVVDYVNYQFYTD 186 (245)
Q Consensus 157 p~~~~~~~~~~~~~~~--~~~vD~~nyd~~~~ 186 (245)
|......-++.+ ..+ ...+|||.+|.|-+
T Consensus 79 p~dg~gd~~f~L-DpLWa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 79 PADGSGDVYFHL-DPLWADPNIDFIGIDNYFP 109 (299)
T ss_pred CCCCCCcccccC-cccccCCcCCEEEeecccc
Confidence 000001112222 222 35799999999854
No 101
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.69 E-value=57 Score=27.47 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=31.2
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhH-HHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSF-AYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~-~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.+++.|||||+|... .+........+ ..-++++|+.+.+.|+.++.
T Consensus 23 ~~~~~~G~~~iEl~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 23 VFAKELGFDFVEMSVD-ESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHcCCCeEEEecC-CcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 8999999999999654 12110000111 24588999999999976654
No 102
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=45.16 E-value=2e+02 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.++.+|+. ++. -+|||=.+.+...... .-..+.+..+ ..++.+++.||+-|.+|.- |-...++.+.+
T Consensus 97 ~~e~l~~l~~~--Gvn-RiSiGvQS~~~~~L~~lgR~~~~~~~~-----~ai~~lr~~g~~~v~iDli-~GlPgqt~~~~ 167 (350)
T PRK08446 97 TKAWLKGMKNL--GVN-RISFGVQSFNEDKLKFLGRIHSQKQII-----KAIENAKKAGFENISIDLI-YDTPLDNKKLL 167 (350)
T ss_pred CHHHHHHHHHc--CCC-EEEEecccCCHHHHHHcCCCCCHHHHH-----HHHHHHHHcCCCEEEEEee-cCCCCCCHHHH
Confidence 35777778776 554 4577765543332222 2122333332 2348999999998888888 63323334455
Q ss_pred HHHHHHHH
Q 046094 134 AYCIGELI 141 (245)
Q Consensus 134 ~~ll~~Lr 141 (245)
.+-++.+.
T Consensus 168 ~~~l~~~~ 175 (350)
T PRK08446 168 KEELKLAK 175 (350)
T ss_pred HHHHHHHH
Confidence 55554444
No 103
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.58 E-value=48 Score=28.00 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=30.9
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhh-HHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPS-FAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~-~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.+++.|||||+|.-. .+.......+ -...++++|+.+++.++.+..
T Consensus 28 ~~~~~~G~~~iEl~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 28 AIAKTAGFDFVEMSVD-ESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHcCCCeEEEecC-ccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 8999999999999755 1111000001 234688899999888876544
No 104
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=44.46 E-value=1.9e+02 Score=26.18 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.++.+|+. ++. -+|||=.+.+...... .-..+.+..++. ++.+++.||+-|.+|.- |-...+..+.+
T Consensus 114 t~e~l~~l~~~--Gvn-rislGvQS~~d~~L~~l~R~~~~~~~~~a-----i~~l~~~G~~~v~~dlI-~GlPgqt~e~~ 184 (400)
T PRK07379 114 DLEQLQGYRSL--GVN-RVSLGVQAFQDELLALCGRSHRVKDIFAA-----VDLIHQAGIENFSLDLI-SGLPHQTLEDW 184 (400)
T ss_pred CHHHHHHHHHC--CCC-EEEEEcccCCHHHHHHhCCCCCHHHHHHH-----HHHHHHcCCCeEEEEee-cCCCCCCHHHH
Confidence 35667777765 554 5677766544333332 223333333322 38999999998888888 54444444555
Q ss_pred HHHHHHHH
Q 046094 134 AYCIGELI 141 (245)
Q Consensus 134 ~~ll~~Lr 141 (245)
.+-++.+.
T Consensus 185 ~~tl~~~~ 192 (400)
T PRK07379 185 QASLEAAI 192 (400)
T ss_pred HHHHHHHH
Confidence 55555544
No 105
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=44.24 E-value=94 Score=24.10 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCCCc-hhhHHHHHhh--cCcceEEE-Ecc-CCCCCCC-Ccch-H----HHHHHHHhC
Q 046094 136 CIGELITQLKNQSVISVATIAPFYSTA-LPYIKLYKDY--GHVVDYVN-YQF-YTDKVRS-PRGY-L----EAFKLRVEQ 204 (245)
Q Consensus 136 ll~~Lr~~l~~~~~~~~~~v~p~~~~~-~~~~~~~~~~--~~~vD~~n-yd~-~~~~~~~-~~~~-~----~~~~~~~~g 204 (245)
+.+.|++.+.+...-++++..|-.... ......-..+ ...+-.++ |+. |..|... .+.+ + .....+..|
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~~~~l~~~G 156 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWIHPGVDRYFVASEEVKEELIERG 156 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCeecCCCCEEEECCHHHHHHHHHcC
Confidence 445566666677666666656654433 3322220111 22233444 663 7777432 1211 1 134567799
Q ss_pred CCCCCee-eeec
Q 046094 205 FGREKMV-PSYE 215 (245)
Q Consensus 205 ~~~~Kl~-lGvp 215 (245)
+|++||. .|+|
T Consensus 157 i~~~~I~vtGiP 168 (169)
T PF06925_consen 157 IPPERIHVTGIP 168 (169)
T ss_pred CChhHEEEeCcc
Confidence 9999986 4666
No 106
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=43.72 E-value=2.1e+02 Score=25.01 Aligned_cols=88 Identities=15% Similarity=0.284 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC----------CCCC---hhhHHHHHHHHHHHHhc-CC---cEEEEE
Q 046094 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM----------RNAS---TPSFAYCIGELITQLKN-QS---VISVAT 154 (245)
Q Consensus 92 ~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~----------~~~d---~~~~~~ll~~Lr~~l~~-~~---~~~~~~ 154 (245)
..+.|+.. +..|.+++++..=.||=|=|. |. ...+ .+.|.+|=+.+...|.. ++ ++-.-+
T Consensus 128 ~~~~~~~~-ld~iA~~l~~l~~~~vPVl~R--p~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~ 204 (311)
T PF02156_consen 128 EYEAFKAD-LDRIADFLKQLKDAGVPVLFR--PFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWS 204 (311)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHCTTS-EEEE--ESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-
T ss_pred HHHHHHHH-HHHHHHHHHHhhcCCCeEEEe--ehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEEEEec
Confidence 44455433 567778888876667888776 32 1122 67899999999888864 23 343333
Q ss_pred eCCCCCCchhhHHHHHhhcCcceEEEEccCCC
Q 046094 155 IAPFYSTALPYIKLYKDYGHVVDYVNYQFYTD 186 (245)
Q Consensus 155 v~p~~~~~~~~~~~~~~~~~~vD~~nyd~~~~ 186 (245)
..........|+ +. .+|||++.+|.|+.
T Consensus 205 ~~~~~~~~~~yY---PG-D~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 205 PNGSRDDAAEYY---PG-DDYVDIVGVDVYND 232 (311)
T ss_dssp EBTTSSCTCTT-------TTT-SEEEEEEEES
T ss_pred CCCCCCCccccC---CC-CCeEEEEEEeCCCC
Confidence 222212223444 33 78999999999987
No 107
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.70 E-value=64 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=23.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEK 122 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~ 122 (245)
+.+|+.|+-|. +.+.+.+.+.|+||+=+|.-+
T Consensus 137 ftnp~a~~ww~----~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 137 FTNPEGREWWK----EGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCChHHHHHHH----HHHHHHHhcCCCcEEEecCCC
Confidence 36778887663 334477888999999999874
No 108
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.32 E-value=75 Score=26.51 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
.+.+++.|||||+|-.. ++ . -++++|+.+.+.++.++.
T Consensus 21 l~~~a~~Gf~~VEl~~~-~~--~--------~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 21 FEKAAQCGFRGVEFMFP-YD--Y--------DIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHhCCCEEEEcCC-CC--C--------CHHHHHHHHHHcCCcEEE
Confidence 38999999999999432 21 1 278889999898887765
No 109
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=43.25 E-value=67 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.9
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEK 122 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~ 122 (245)
+.+|+.|+-|.+ .+.+.+.+.|+||+=+|+-+
T Consensus 128 ftnp~a~~w~~~----~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 128 ATNPEAREYYWK----QLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred CCCHHHHHHHHH----HHHHHhhcCCCcEEEecCCC
Confidence 467777777733 34577888999999999873
No 110
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=41.62 E-value=33 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=26.6
Q ss_pred cCCCCCCCccc---cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEe
Q 046094 76 SGWSLGSKVLH---WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDY 120 (245)
Q Consensus 76 GG~~~~~~~~~---~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDw 120 (245)
|-|......+- .+.+.-|+.+++.++ +.+..-.+|||-+|=
T Consensus 32 ~~W~~~~~~~~~~~~~~~~~r~~w~~~v~----e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPGYPGHYQMYVWSCPDYRRYWVDAVV----EELQNSPWDGVFADN 75 (79)
T ss_pred eecCCCCceeeeccCCcchHHHHHHHHHH----HHHhcCccceeeeec
Confidence 44554333333 233788888865554 777777999999883
No 111
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=41.33 E-value=1.6e+02 Score=26.57 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccc-----cCCC---CchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCC
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLH-----WYNP---RNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNA 128 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-----~~~~---~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~ 128 (245)
+...+.|++ ++|+-+....++-....+. ..++ ..-..|++...+.|.+++.+||-|.+=+|+. ++....
T Consensus 132 el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~-~~~~~~ 208 (384)
T smart00812 132 ELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG-WEAPDD 208 (384)
T ss_pred HHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC-CCCccc
Confidence 333455555 8999876654332111111 0111 1234565555789999999999999999987 664432
Q ss_pred ChhhHHHHHHHHHHH
Q 046094 129 STPSFAYCIGELITQ 143 (245)
Q Consensus 129 d~~~~~~ll~~Lr~~ 143 (245)
.....+|++.+|+.
T Consensus 209 -~~~~~~l~~~~~~~ 222 (384)
T smart00812 209 -YWRSKEFLAWLYNL 222 (384)
T ss_pred -hhcHHHHHHHHHHh
Confidence 12345566666653
No 112
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=40.83 E-value=47 Score=27.83 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=45.5
Q ss_pred cCCCCCHHHHHHHHHhC-C-CceEE-----------EEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeE
Q 046094 50 WAETLTPDSVAAVKARH-P-NVKAL-----------ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGI 116 (245)
Q Consensus 50 ~~d~~~~~~~~~lk~~~-~-~~kvl-----------lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGv 116 (245)
|-.+...+....|.++- . .|.+. ++|||.-.|...|+..+.++.-+|+ .+++.+++.||+=+
T Consensus 110 WI~~e~~~aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~iG~~F~GESMFs~~~nASKvAl~-----~L~~~L~~~g~~li 184 (233)
T PRK00301 110 WITPEIIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGRAFFGESMFSRATDASKVALA-----ALVEHLRRHGFKLI 184 (233)
T ss_pred CCCHHHHHHHHHHHHcCceEEEEEEECCEEEeeeeccccCCEEeecccccCCCChHHHHHH-----HHHHHHHHCCceEE
Confidence 65555566667776641 1 24444 7777766666778866666666663 45689999999999
Q ss_pred EEEec
Q 046094 117 DIDYE 121 (245)
Q Consensus 117 DiDwE 121 (245)
|.-+.
T Consensus 185 D~Q~~ 189 (233)
T PRK00301 185 DCQVL 189 (233)
T ss_pred EECCC
Confidence 98777
No 113
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=40.55 E-value=1.2e+02 Score=21.13 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeccCCCCC---------CChhhHHHHHHHHHHHHhc
Q 046094 98 SNAFSSLKSIIQEYHLDGIDIDYEKFPMRN---------ASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 98 ~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~---------~d~~~~~~ll~~Lr~~l~~ 146 (245)
+.+...+.+.+++++++=--+|-| |..+. +++.+|..|+++|...|+.
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e-~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVE-YQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEE-EEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 344566778999999988888888 66532 3567999999999998864
No 114
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=40.51 E-value=1.4e+02 Score=27.44 Aligned_cols=37 Identities=14% Similarity=0.358 Sum_probs=24.9
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
++.+++.||+.|.+|.. |-...+..+.+.+.++.+.+
T Consensus 194 i~~lr~~G~~~v~~dli-~GlPgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 194 VELLRAAGFESINFDLI-YGLPHQTVESFRETLDKVIA 230 (453)
T ss_pred HHHHHhcCCCcEEEeEE-EeCCCCCHHHHHHHHHHHHh
Confidence 48899999998888777 53333445566666666553
No 115
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.49 E-value=2.3e+02 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=13.4
Q ss_pred HHHHHHcCCCeEEEEec
Q 046094 105 KSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE 121 (245)
...+++-|||||+|.=-
T Consensus 148 A~~a~~aGfDgVeih~a 164 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHcCCCEEEEccc
Confidence 35667789999999755
No 116
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=40.16 E-value=67 Score=30.45 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhc
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~ 146 (245)
++++.-|+++|++||+-+|--+ ..... .-..|++++++.+++
T Consensus 226 ~~~~~~W~~e~~iDGfR~D~~~-~~~~~---~~~~~l~~~~~~~~~ 267 (542)
T TIGR02402 226 LDNALYWLREYHFDGLRLDAVH-AIADT---SAKHILEELAREVHE 267 (542)
T ss_pred HHHHHHHHHHhCCcEEEEeCHH-Hhccc---cHHHHHHHHHHHHHH
Confidence 5667799999999999999541 11111 124677777777764
No 117
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.44 E-value=2.4e+02 Score=24.08 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHc--CCCeEEEEeccCCCCC-------CChhhHHHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEY--HLDGIDIDYEKFPMRN-------ASTPSFAYCIG 138 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~--~~DGvDiDwE~~p~~~-------~d~~~~~~ll~ 138 (245)
+..++++|.|.+. +.++ .+.+.+.+. ++|+|||+.- .|... .+.+...++++
T Consensus 90 ~~pl~~qi~g~~~-------------~~~~-----~~a~~~~~~~~~~d~ielN~~-cP~~~~~g~~l~~~~~~~~eiv~ 150 (300)
T TIGR01037 90 PTPLIASVYGSSV-------------EEFA-----EVAEKLEKAPPYVDAYELNLS-CPHVKGGGIAIGQDPELSADVVK 150 (300)
T ss_pred CCcEEEEeecCCH-------------HHHH-----HHHHHHHhccCccCEEEEECC-CCCCCCCccccccCHHHHHHHHH
Confidence 4679999987331 2232 223566654 4999999988 88743 23456677888
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 046094 139 ELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 139 ~Lr~~l~~~~~~~~~~v~p~ 158 (245)
++|+.. ...+++-+.|.
T Consensus 151 ~vr~~~---~~pv~vKi~~~ 167 (300)
T TIGR01037 151 AVKDKT---DVPVFAKLSPN 167 (300)
T ss_pred HHHHhc---CCCEEEECCCC
Confidence 888765 34455555543
No 118
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.38 E-value=72 Score=28.54 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 96 WISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 96 fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.++.+++ ....+++-|||||+|.=-
T Consensus 142 ii~~f~~-AA~~a~~aGfDgVeih~a 166 (361)
T cd04747 142 VIAAFAR-AAADARRLGFDGIELHGA 166 (361)
T ss_pred HHHHHHH-HHHHHHHcCCCEEEEecc
Confidence 3444443 235667789999999866
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.08 E-value=24 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+++++.|||||++... .+.... ....-++++|+.+++.++.+..
T Consensus 2 ~~~~~~G~~~vE~~~~-~~~~~~---~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFD-DGQPWD---EKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHH-HHSHHT---HHHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecC-CCcccc---cchHHHHHHHHHHHHcCCeEEE
Confidence 6889999999999988 222111 1156788999999999876544
No 120
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.06 E-value=83 Score=27.81 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=22.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
..+|+.|+=|. +.+..++.++|+||+=+|--
T Consensus 156 ftnp~a~~Ww~----~~~~~~~~~~Gidg~w~D~~ 186 (340)
T cd06597 156 FTNPEAAQWWM----EKRRYLVDELGIDGFKTDGG 186 (340)
T ss_pred CCCHHHHHHHH----HHHHHHHHhcCCcEEEecCC
Confidence 46777777663 33457777899999999955
No 121
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=38.74 E-value=62 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=23.5
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHH
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELI 141 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr 141 (245)
.+.+..-|||.|-||.||-|. +.+.+..+++..+
T Consensus 33 ~e~~a~~G~D~v~iD~EHg~~---~~~~~~~~i~a~~ 66 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEHAPN---DVSTFIPQLMALK 66 (256)
T ss_pred HHHHHhcCCCEEEEccccCCC---CHHHHHHHHHHHh
Confidence 388889999999999996443 3335555555443
No 122
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=38.35 E-value=2.3e+02 Score=23.50 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC---C--------CChhhHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR---N--------ASTPSFAYC 136 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~---~--------~d~~~~~~l 136 (245)
+..+.++|.|.+. +.++ .+...+.++ .|+|||+-. .|.. . .+.+...++
T Consensus 72 ~~p~~vqi~g~~~-------------~~~~-----~aa~~~~~~-~~~ielN~g-CP~~~v~~~g~G~~Ll~~p~~l~ei 131 (233)
T cd02911 72 NVLVGVNVRSSSL-------------EPLL-----NAAALVAKN-AAILEINAH-CRQPEMVEAGAGEALLKDPERLSEF 131 (233)
T ss_pred CCeEEEEecCCCH-------------HHHH-----HHHHHHhhc-CCEEEEECC-CCcHHHhcCCcchHHcCCHHHHHHH
Confidence 5688899987431 1222 223667675 599999999 8864 1 134566777
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhc-CcceEEEEc
Q 046094 137 IGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYG-HVVDYVNYQ 182 (245)
Q Consensus 137 l~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~-~~vD~~nyd 182 (245)
++++|+. +..+++-+.+..+ .....+.+.+. .-+|.+..+
T Consensus 132 v~avr~~----~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 132 IKALKET----GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred HHHHHhc----CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEEC
Confidence 7777762 4555665555432 22333322222 226776654
No 123
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=37.68 E-value=74 Score=30.56 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcC
Q 046094 100 AFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 100 ~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~ 147 (245)
+++++.-|++++++||+-+|--. -. + ..+++++++++++.
T Consensus 300 i~~~~~~W~~e~~iDGfR~D~~~-~~---~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 300 IVDSVLYWVKEYNIDGFRFDLMG-IH---D----IETMNEIRKALNKI 339 (605)
T ss_pred HHHHHHHHHHHcCCCEEEEechh-cC---C----HHHHHHHHHHHHhh
Confidence 35677899999999999999661 11 1 23566676666543
No 124
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=37.33 E-value=2.3e+02 Score=25.18 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.+..+++. +++ -+|+|=.+.+...... .-..+.+... ..++.+++.|++-|.+|.- +-...+..+.+
T Consensus 107 ~~e~l~~l~~~--G~~-rvslGvQS~~~~~L~~l~R~~s~~~~~-----~a~~~l~~~g~~~v~~dli-~GlPgqt~~~~ 177 (375)
T PRK05628 107 SPEFFAALRAA--GFT-RVSLGMQSAAPHVLAVLDRTHTPGRAV-----AAAREARAAGFEHVNLDLI-YGTPGESDDDW 177 (375)
T ss_pred CHHHHHHHHHc--CCC-EEEEecccCCHHHHHHcCCCCCHHHHH-----HHHHHHHHcCCCcEEEEEe-ccCCCCCHHHH
Confidence 35667777765 553 5677655543332222 2222333322 2348899999998999988 63333334456
Q ss_pred HHHHHHHH
Q 046094 134 AYCIGELI 141 (245)
Q Consensus 134 ~~ll~~Lr 141 (245)
...++.+.
T Consensus 178 ~~tl~~~~ 185 (375)
T PRK05628 178 RASLDAAL 185 (375)
T ss_pred HHHHHHHH
Confidence 55555544
No 125
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.18 E-value=81 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=20.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
+.+|+.|+=|.+.+ +-+.+.|+||+=+|+-
T Consensus 134 ftnp~a~~w~~~~~-----~~~~~~Gvdg~w~D~~ 163 (317)
T cd06598 134 WFDPAAQAWFHDNY-----KKLIDQGVTGWWGDLG 163 (317)
T ss_pred CCCHHHHHHHHHHH-----HHhhhCCccEEEecCC
Confidence 35777776663322 3457889999999986
No 126
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=36.92 E-value=2.4e+02 Score=28.25 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeccC---CC-CCCChh-----hHHHHHHHHHHHHhcCCcEEEEEe
Q 046094 98 SNAFSSLKSIIQEYHLDGIDIDYEKF---PM-RNASTP-----SFAYCIGELITQLKNQSVISVATI 155 (245)
Q Consensus 98 ~~~~~sl~~~l~~~~~DGvDiDwE~~---p~-~~~d~~-----~~~~ll~~Lr~~l~~~~~~~~~~v 155 (245)
..+.+.+.++|.+-|+|||-+|-.++ -. ..+++. .+.++-..+++.|...+.+..+..
T Consensus 468 ~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~ 534 (865)
T PLN02982 468 GDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQ 534 (865)
T ss_pred HHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeeccc
Confidence 34478888999999999999997721 11 122222 334455555666655555544443
No 127
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.88 E-value=1.6e+02 Score=24.98 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=47.4
Q ss_pred cCCCCCHHHHHHHHHhCCCceEE-EEEcCCCCCCCcccc--CCCCchHHHHHHHHHHHHHHHHHcC-----CCeEEEEec
Q 046094 50 WAETLTPDSVAAVKARHPNVKAL-ASLSGWSLGSKVLHW--YNPRNPQIWISNAFSSLKSIIQEYH-----LDGIDIDYE 121 (245)
Q Consensus 50 ~~d~~~~~~~~~lk~~~~~~kvl-lsiGG~~~~~~~~~~--~~~~~r~~fi~~~~~sl~~~l~~~~-----~DGvDiDwE 121 (245)
|+++...+..+.+.+. ++.+= +++-+ ...|++ .|++.|++= ..+....+.+.++.| +-|.|+.+|
T Consensus 51 Ws~~er~~l~~ai~et--gv~ipSmClSa----HRRfPfGS~D~~~r~~a-leiM~KaI~LA~dLGIRtIQLAGYDVYYE 123 (287)
T COG3623 51 WSKEERLALVNAIQET--GVRIPSMCLSA----HRRFPFGSKDEATRQQA-LEIMEKAIQLAQDLGIRTIQLAGYDVYYE 123 (287)
T ss_pred CCHHHHHHHHHHHHHh--CCCccchhhhh----hccCCCCCCCHHHHHHH-HHHHHHHHHHHHHhCceeEeeccceeeec
Confidence 7765555555556554 55441 22222 223443 567777653 333455567777776 789999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHHH
Q 046094 122 KFPMRNASTPSFAYCIGELITQL 144 (245)
Q Consensus 122 ~~p~~~~d~~~~~~ll~~Lr~~l 144 (245)
|.+.+ .-..|++-||.+.
T Consensus 124 --~~d~e---T~~rFi~g~~~a~ 141 (287)
T COG3623 124 --EADEE---TRQRFIEGLKWAV 141 (287)
T ss_pred --cCCHH---HHHHHHHHHHHHH
Confidence 65544 4455566665554
No 128
>PRK10785 maltodextrin glucosidase; Provisional
Probab=36.73 E-value=60 Score=31.12 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH-cCCCeEEEEecc-CCCCCCChhhHHHHHHHHHHHHhcCC
Q 046094 88 YNPRNPQIWISNAFSSLKSIIQE-YHLDGIDIDYEK-FPMRNASTPSFAYCIGELITQLKNQS 148 (245)
Q Consensus 88 ~~~~~r~~fi~~~~~sl~~~l~~-~~~DGvDiDwE~-~p~~~~d~~~~~~ll~~Lr~~l~~~~ 148 (245)
.+++.|+.++++--+.+..|+++ +|+||.-+|--+ .+.. .....-..|++++|+++++..
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~-~~~~~~~~f~~~~~~~vk~~~ 364 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG-GGARNNLQHVAGITQAAKEEN 364 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccc-cCccccHHHHHHHHHHHHhhC
Confidence 34555555543211124568886 999999999542 2211 112234578888888887644
No 129
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=36.50 E-value=3e+02 Score=24.28 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCceEEEEEcCC--CCCCCccccC--------CCCchHHHHH-HHHHHHHHHHHHcCCCeEEEEeccCCC
Q 046094 57 DSVAAVKARHPNVKALASLSGW--SLGSKVLHWY--------NPRNPQIWIS-NAFSSLKSIIQEYHLDGIDIDYEKFPM 125 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~--~~~~~~~~~~--------~~~~r~~fi~-~~~~sl~~~l~~~~~DGvDiDwE~~p~ 125 (245)
+...+.|++ ++|+.+-...+ .......... .+...+++.+ .....|.+++.+|..|.+=+|.- .+.
T Consensus 142 El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~-~~~ 218 (346)
T PF01120_consen 142 ELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG-WPD 218 (346)
T ss_dssp HHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST-TSC
T ss_pred HHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC-CCc
Confidence 334555665 89998655544 3221111110 1223345555 56688899999999999999977 554
Q ss_pred CCCChhhHHHHHHHHHHH
Q 046094 126 RNASTPSFAYCIGELITQ 143 (245)
Q Consensus 126 ~~~d~~~~~~ll~~Lr~~ 143 (245)
. .+...+..+.+.+|+.
T Consensus 219 ~-~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 219 P-DEDWDSAELYNWIRKL 235 (346)
T ss_dssp C-CTHHHHHHHHHHHHHH
T ss_pred c-ccccCHHHHHHHHHHh
Confidence 2 2333555566666653
No 130
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=36.48 E-value=2.5e+02 Score=23.40 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCC---------
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRN--------- 127 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~--------- 127 (245)
+.+.+++ .+.+++++|++.+. +.++ .+...+.+ ++|+|||+-- +|...
T Consensus 59 ~e~~~~~---~~~~vivnv~~~~~-------------ee~~-----~~a~~v~~-~~d~IdiN~g-CP~~~v~~~g~G~~ 115 (231)
T TIGR00736 59 EQIKKAE---SRALVSVNVRFVDL-------------EEAY-----DVLLTIAE-HADIIEINAH-CRQPEITEIGIGQE 115 (231)
T ss_pred HHHHHHh---hcCCEEEEEecCCH-------------HHHH-----HHHHHHhc-CCCEEEEECC-CCcHHHcCCCCchh
Confidence 3445554 35689999999442 1222 22256655 7999999998 88731
Q ss_pred --CChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhh-cCcceEEEEc
Q 046094 128 --ASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDY-GHVVDYVNYQ 182 (245)
Q Consensus 128 --~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~-~~~vD~~nyd 182 (245)
.+.+.+.++++++|+ .+.-+++-+.+.... .....+.+.+ ..-+|.+.+|
T Consensus 116 Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~~~-~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 116 LLKNKELLKEFLTKMKE----LNKPIFVKIRGNCIP-LDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred hcCCHHHHHHHHHHHHc----CCCcEEEEeCCCCCc-chHHHHHHHHHHcCCCEEEEe
Confidence 245567777887773 245566666664422 1222222222 3447888765
No 131
>PLN02899 alpha-galactosidase
Probab=36.18 E-value=1.8e+02 Score=28.07 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
++|+.+...++|+|=|-+||- ++.. .+.+. ++.++++|.+.+.-+...++|+.
T Consensus 197 ~~Sla~tfAsWGVDyLKyD~c-~~~~-~~~~e----y~~ms~AL~aTGRPIvySLspG~ 249 (633)
T PLN02899 197 LRSLYDQYAEWGVDFVKHDCV-FGDD-FDLEE----ITYVSEVLKELDRPIVYSLSPGT 249 (633)
T ss_pred hHHHHHHHHHhCCCEEEEcCC-CCCC-CChHH----HHHHHHHHHHhCCCeEEEecCCc
Confidence 666679999999999999998 6532 22223 36778888887765555556543
No 132
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=35.93 E-value=1.7e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHcCCC-eEEEEeccCCCCC---CChhhHHHHHHHHHHHHhcCCc
Q 046094 106 SIIQEYHLD-GIDIDYEKFPMRN---ASTPSFAYCIGELITQLKNQSV 149 (245)
Q Consensus 106 ~~l~~~~~D-GvDiDwE~~p~~~---~d~~~~~~ll~~Lr~~l~~~~~ 149 (245)
+.++.++.+ -+-||+| .+... .++..+.+.++++.+++++.|.
T Consensus 81 ~~~~~~~~~~~~~lD~E-~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~ 127 (191)
T cd06414 81 RLIKGYKLSYPVYYDLE-DETQLGAGLSKDQRTDIANAFCETIEAAGY 127 (191)
T ss_pred HHhhccCCCCCeEEEee-cCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 566666544 3578999 44422 2344555555555555544443
No 133
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=35.87 E-value=54 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=22.8
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHH
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELI 141 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr 141 (245)
+++...|||.|-||.||-|. +.+.+..+++..+
T Consensus 33 E~~a~~GfD~v~iD~EHg~~---~~~~l~~~i~a~~ 65 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPN---TIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHcCCCEEEEccccCCC---CHHHHHHHHHHHH
Confidence 78888999999999996433 3334555555444
No 134
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.08 E-value=2.2e+02 Score=28.17 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 96 WISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 96 fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.++.++++. ..+++-|||||+|.--
T Consensus 549 ~i~~f~~aA-~~a~~aGfDgveih~a 573 (765)
T PRK08255 549 VRDDFVAAA-RRAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEecc
Confidence 344444333 4556689999999754
No 135
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.97 E-value=1.8e+02 Score=23.60 Aligned_cols=66 Identities=17% Similarity=0.020 Sum_probs=43.4
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcceEEEEccCC
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQFYT 185 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~nyd~~~ 185 (245)
+.+.+.|.|-|-+.+|. .++..++++.+|+ .+...-+++.|.+.- . .+..+.+.+|++.+|.-.
T Consensus 74 ~~~~~~g~~~i~~H~E~-------~~~~~~~i~~ik~----~g~k~GialnP~T~~--~---~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEA-------TEDPKETIKYIKE----AGIKAGIALNPETPV--E---ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp HHHHHHT-SEEEEEGGG-------TTTHHHHHHHHHH----TTSEEEEEE-TTS-G--G---GGTTTGCCSSEEEEESS-
T ss_pred HHHHhcCCCEEEEcccc-------hhCHHHHHHHHHH----hCCCEEEEEECCCCc--h---HHHHHhhhcCEEEEEEec
Confidence 67778899999999992 1255566776665 466667777776542 1 126678889999988876
Q ss_pred CC
Q 046094 186 DK 187 (245)
Q Consensus 186 ~~ 187 (245)
++
T Consensus 138 PG 139 (201)
T PF00834_consen 138 PG 139 (201)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 136
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=34.81 E-value=92 Score=27.12 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHcCCCeEEEEeccCCCC-------------C--------CChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMR-------------N--------ASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~-------------~--------~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+-+.+-|+|=|-+||. .... . ++++.++++++++-+.|++.++++-+
T Consensus 266 e~l~~tG~DVvgLDWT-vdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~ryI~NL 333 (359)
T KOG2872|consen 266 EELAQTGYDVVGLDWT-VDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKSRYIANL 333 (359)
T ss_pred HHHHhcCCcEEeeccc-ccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhCccceEEec
Confidence 6777889999999998 4220 0 24668889999999999988887665
No 137
>PLN03231 putative alpha-galactosidase; Provisional
Probab=34.05 E-value=2.5e+02 Score=25.23 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~ 158 (245)
.+++.+...+.|+|=|-+|+- ++......+. ++.++++|.+.+.-+..+++|.
T Consensus 165 ~~~~a~~fA~WGVDylK~D~c-~~~~~~~~~~----y~~m~~AL~~tGRpIv~Slc~g 217 (357)
T PLN03231 165 IQSLYDQYASWGIDFIKHDCV-FGAENPQLDE----ILTVSKAIRNSGRPMIYSLSPG 217 (357)
T ss_pred HHHHHHHHHHhCCCEEeeccc-CCCCcccHHH----HHHHHHHHHHhCCCeEEEecCC
Confidence 555669999999999999998 6543222223 4567777777776555555654
No 138
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=33.90 E-value=3e+02 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEE--eccCCCC---CCCh
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDID--YEKFPMR---NAST 130 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiD--wE~~p~~---~~d~ 130 (245)
.+.++.+|+..+++.++++ ||-+ .+|+- ++++. .||+|+. .| -++. ..|.
T Consensus 188 ~~~l~~vr~~~~~~Pvllg-gGvt-----------------~eNv~----e~l~~--adGviVgS~~K-~~G~~~n~~D~ 242 (257)
T TIGR00259 188 LELLKLAKETVKDTPVLAG-SGVN-----------------LENVE----ELLSI--ADGVIVATTIK-KDGVFNNFVDQ 242 (257)
T ss_pred HHHHHHHHhccCCCeEEEE-CCCC-----------------HHHHH----HHHhh--CCEEEECCCcc-cCCccCCCcCH
Confidence 5667777766666766654 2211 23322 44443 9999997 33 2431 2466
Q ss_pred hhHHHHHHHHHHHH
Q 046094 131 PSFAYCIGELITQL 144 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l 144 (245)
+...+|++.+|+.+
T Consensus 243 ~rV~~Fm~~v~~~~ 256 (257)
T TIGR00259 243 ARVSQFVEKVAHGL 256 (257)
T ss_pred HHHHHHHHHHHHhc
Confidence 68888998888765
No 139
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=33.78 E-value=3.7e+02 Score=24.71 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCC-----CCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCC
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLG-----SKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNAS 129 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~-----~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d 129 (245)
+...+.++++.+|+.++++-|.--... +..|-.+ ..+ ++.+.+..++++++=+=+.++ --....+
T Consensus 153 ne~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~-~~~--------~~~lLd~ak~l~lnvvGvsfH-vGSgc~d 222 (448)
T KOG0622|consen 153 NEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCS-LDN--------CRHLLDMAKELELNVVGVSFH-VGSGCTD 222 (448)
T ss_pred CHHHHHHHHHhCCCceEEEEEccCCCcccccccCccCCC-HHH--------HHHHHHHHHHcCceEEEEEEE-ecCCCCC
Confidence 356788999999999999988643320 1111111 111 122335666666655555555 3223334
Q ss_pred hhhHHHHHHHHHHHHh
Q 046094 130 TPSFAYCIGELITQLK 145 (245)
Q Consensus 130 ~~~~~~ll~~Lr~~l~ 145 (245)
.+.|..-++.-|..|+
T Consensus 223 ~~~y~~Ai~dAr~vfd 238 (448)
T KOG0622|consen 223 LQAYRDAISDARNVFD 238 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 140
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=33.76 E-value=2e+02 Score=26.82 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCeEEEE-----eccCCCCCCC-h-hhHHHHHHHHHHHHhcCCcEEEE
Q 046094 102 SSLKSIIQEYHLDGIDID-----YEKFPMRNAS-T-PSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 102 ~sl~~~l~~~~~DGvDiD-----wE~~p~~~~d-~-~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
..+..+..+.|.||+-+| |+ -+++.+. . +..-++++++|+.+.+.+.+++.
T Consensus 172 ~~il~fwl~~GvdgfRLDAv~~l~K-~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~ 229 (470)
T TIGR03852 172 RDNLENLAEHGASIIRLDAFAYAVK-KLGTNDFFVEPEIWELLDEVRDILAPTGAEILP 229 (470)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcc-cCCCCcccCChhHHHHHHHHHHHhccCCCEEEe
Confidence 344477778899999999 66 3554432 2 57788999999988777665554
No 141
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=33.62 E-value=69 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecc--------------CCCCCCChhhH--HHHHHHHHHHHhcC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEK--------------FPMRNASTPSF--AYCIGELITQLKNQ 147 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~--------------~p~~~~d~~~~--~~ll~~Lr~~l~~~ 147 (245)
+++..-|+.+|.+||+-+|=-. -|...+.++|+ +++++++.+.++..
T Consensus 285 l~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~ 347 (628)
T COG0296 285 LANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEE 347 (628)
T ss_pred HHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhccc
Confidence 4555699999999999888320 03333344544 56888888877654
No 142
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=33.37 E-value=2.8e+02 Score=22.94 Aligned_cols=65 Identities=17% Similarity=0.397 Sum_probs=44.1
Q ss_pred HhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCC------C-------h
Q 046094 64 ARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNA------S-------T 130 (245)
Q Consensus 64 ~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~------d-------~ 130 (245)
++.++-++++=|=|++.. |. ..+....++....+++|+-|=+- ||.... | .
T Consensus 13 ~~~~~~~vlvfVHGyn~~---f~------------~a~~r~aql~~~~~~~~~~i~Fs-WPS~g~~~~Y~~d~~~a~~s~ 76 (233)
T PF05990_consen 13 AKSPDKEVLVFVHGYNNS---FE------------DALRRAAQLAHDLGFPGVVILFS-WPSDGSLLGYFYDRESARFSG 76 (233)
T ss_pred hhCCCCeEEEEEeCCCCC---HH------------HHHHHHHHHHHHhCCCceEEEEE-cCCCCChhhhhhhhhhHHHHH
Confidence 345688999999898752 11 11233347788889999999888 887532 1 3
Q ss_pred hhHHHHHHHHHHHH
Q 046094 131 PSFAYCIGELITQL 144 (245)
Q Consensus 131 ~~~~~ll~~Lr~~l 144 (245)
+.|..||+.|++..
T Consensus 77 ~~l~~~L~~L~~~~ 90 (233)
T PF05990_consen 77 PALARFLRDLARAP 90 (233)
T ss_pred HHHHHHHHHHHhcc
Confidence 37778888887763
No 143
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=33.23 E-value=2.9e+02 Score=24.57 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~ 133 (245)
..+.+..+|+. ++. -+|||=.+.+...... .-..+.+... ..++.+++.|++.+.+|.- +-...+..+.+
T Consensus 99 ~~e~l~~l~~~--G~~-rvsiGvqS~~~~~l~~l~r~~~~~~~~-----~~i~~l~~~g~~~v~~dli-~GlPgqt~~~~ 169 (377)
T PRK08599 99 TKEKLQVLKDS--GVN-RISLGVQTFNDELLKKIGRTHNEEDVY-----EAIANAKKAGFDNISIDLI-YALPGQTIEDF 169 (377)
T ss_pred CHHHHHHHHHc--CCC-EEEEecccCCHHHHHHcCCCCCHHHHH-----HHHHHHHHcCCCcEEEeee-cCCCCCCHHHH
Confidence 35667777765 443 4566554433222221 1122222222 3348999999998888877 54434445566
Q ss_pred HHHHHHHHH
Q 046094 134 AYCIGELIT 142 (245)
Q Consensus 134 ~~ll~~Lr~ 142 (245)
.+.++.+.+
T Consensus 170 ~~~l~~~~~ 178 (377)
T PRK08599 170 KESLAKALA 178 (377)
T ss_pred HHHHHHHHc
Confidence 666665543
No 144
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=33.22 E-value=3.4e+02 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHcCCCeEEEEeccCCCCC-----------CChhhHHHHHHHHHHHHh
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRN-----------ASTPSFAYCIGELITQLK 145 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~-----------~d~~~~~~ll~~Lr~~l~ 145 (245)
.++.++|+|+|||+-= .|... .+.+-+.+++++++++.+
T Consensus 86 ~~~~~~g~~~IdlN~G-CP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~ 135 (323)
T COG0042 86 KIAEELGADIIDLNCG-CPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG 135 (323)
T ss_pred HHHHhcCCCEEeeeCC-CChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999 88732 245567788888888886
No 145
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=33.06 E-value=81 Score=20.01 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCeE-EEEeccCCCCCCChhhHHHHHHHHHHHH
Q 046094 103 SLKSIIQEYHLDGI-DIDYEKFPMRNASTPSFAYCIGELITQL 144 (245)
Q Consensus 103 sl~~~l~~~~~DGv-DiDwE~~p~~~~d~~~~~~ll~~Lr~~l 144 (245)
.+.+.|++.|+||. .|-||+ +.. +-.+.+.+-++-||..+
T Consensus 4 ~i~~~L~~~GYdG~~siE~ED-~~~-~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 4 RIFSALREIGYDGWLSIEHED-ALM-DPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHTT--SEEEE---S-TTT-SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCceEEEEeec-CCC-CHHHHHHHHHHHHHHhc
Confidence 34589999999995 566772 222 11235555555565544
No 146
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=32.80 E-value=64 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=22.9
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHH
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELI 141 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr 141 (245)
.+++..-|||.|-||.||-|. +.+.+..+++..+
T Consensus 26 ~e~~a~~G~D~v~iD~EHg~~---~~~~~~~~~~a~~ 59 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEHAPN---DVLTFIPQLMALK 59 (249)
T ss_pred HHHHHhcCCCEEEEecccCCC---CHHHHHHHHHHHh
Confidence 378889999999999996343 2334444444433
No 147
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=32.73 E-value=1e+02 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 102 SSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 102 ~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
..|.++++.+|+.=+++..|...+...+++.|.+|++.+++
T Consensus 19 ~~l~~~a~~~g~~~~~i~~d~~SG~~~~Rp~~~~ll~~~~~ 59 (146)
T cd03767 19 ESLEAFATERGFYIAGFYVENASGAKLDRPELFRLLDDAQS 59 (146)
T ss_pred HHHHHHHHHCCCEEEEEEEECCcCCCCCCHHHHHHHHHhhC
Confidence 44567888888876677777323334568899999998875
No 148
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.68 E-value=3.3e+02 Score=24.32 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~ 134 (245)
.+.+..||+. ++. -+|||=.+....... ..-..+.+..++ .++.+++.||+-|.+|.- +-...+..+.+.
T Consensus 107 ~e~l~~Lk~~--Gv~-risiGvqS~~~~~L~~l~r~~~~~~~~~-----ai~~~~~~G~~~v~~dli-~Glpgqt~~~~~ 177 (378)
T PRK05660 107 ADRFVGYQRA--GVN-RISIGVQSFSEEKLKRLGRIHGPDEAKR-----AAKLAQGLGLRSFNLDLM-HGLPDQSLEEAL 177 (378)
T ss_pred HHHHHHHHHc--CCC-EEEeccCcCCHHHHHHhCCCCCHHHHHH-----HHHHHHHcCCCeEEEEee-cCCCCCCHHHHH
Confidence 4556666654 443 345554443222222 122223333322 238889999996666666 433334344555
Q ss_pred HHHHHHHH
Q 046094 135 YCIGELIT 142 (245)
Q Consensus 135 ~ll~~Lr~ 142 (245)
..++.+.+
T Consensus 178 ~~l~~~~~ 185 (378)
T PRK05660 178 DDLRQAIA 185 (378)
T ss_pred HHHHHHHh
Confidence 55555443
No 149
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=32.23 E-value=2e+02 Score=25.03 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHHc--CCCeEEEEeccCCCCCC------Chh---hHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 105 KSIIQEY--HLDGIDIDYEKFPMRNA------STP---SFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 105 ~~~l~~~--~~DGvDiDwE~~p~~~~------d~~---~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
++-++++ -+|.|-|||. |-.... |++ +..+|+++|+ +.+.-+++.+.|..
T Consensus 30 ~~~~~~~~iP~d~i~lD~~-~~~~~~~~~f~~d~~~FPdp~~mi~~L~----~~G~kv~~~i~P~v 90 (319)
T cd06591 30 AKEYRKRGIPLDVIVQDWF-YWPKQGWGEWKFDPERFPDPKAMVRELH----EMNAELMISIWPTF 90 (319)
T ss_pred HHHHHHhCCCccEEEEech-hhcCCCceeEEEChhhCCCHHHHHHHHH----HCCCEEEEEecCCc
Confidence 3666776 5899999987 422222 333 4455666655 56655555544543
No 150
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=32.08 E-value=1.5e+02 Score=24.27 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.+..+..+|+..|+++|.++.+-.- .+..+ ++++.++|++++-+..|
T Consensus 23 ~~g~~~~~k~~~~~~~i~~~~~~nv-----------~N~~s---------~~~~~~~G~~~i~ls~E 69 (233)
T PF01136_consen 23 NPGLLELLKELGPDLKIIADYSLNV-----------FNSES---------ARFLKELGASRITLSPE 69 (233)
T ss_pred CHHHHHHHHHhCCCCcEEEecCccC-----------CCHHH---------HHHHHHcCCCEEEECcc
Confidence 3778889999999999998864321 22222 28999999999999999
No 151
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.63 E-value=1.1e+02 Score=25.62 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=32.4
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.+.+.|+|+++|... -|........-...++++|+.+.+.++.+++
T Consensus 17 ~~~~~~G~~~vel~~~-~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 17 IEAVDIGARSFQLFLG-NPRSWKGVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HHHHHcCCCEEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8899999999999888 4643211112234688888888887765544
No 152
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.44 E-value=3.8e+02 Score=23.88 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~ 134 (245)
.+.+..+|+. ++. -+|||=.+.+...... .-....+..++ .++.+++.||+-|.+|.- |-...++.+.+.
T Consensus 103 ~~~l~~l~~~--G~n-rislGvQS~~~~~L~~l~R~~~~~~~~~-----ai~~~~~~g~~~v~~Dli-~GlPgqt~~~~~ 173 (370)
T PRK06294 103 ESYIRALALT--GIN-RISIGVQTFDDPLLKLLGRTHSSSKAID-----AVQECSEHGFSNLSIDLI-YGLPTQSLSDFI 173 (370)
T ss_pred HHHHHHHHHC--CCC-EEEEccccCCHHHHHHcCCCCCHHHHHH-----HHHHHHHcCCCeEEEEee-cCCCCCCHHHHH
Confidence 5667777765 554 4577765543332222 11222333322 237899999998888887 544444444555
Q ss_pred HHHHHHH
Q 046094 135 YCIGELI 141 (245)
Q Consensus 135 ~ll~~Lr 141 (245)
.-++.+.
T Consensus 174 ~~l~~~~ 180 (370)
T PRK06294 174 VDLHQAI 180 (370)
T ss_pred HHHHHHH
Confidence 5444444
No 153
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=31.12 E-value=3.6e+02 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 91 RNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 91 ~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
..|..=++.+ ++|...++|.||.++.+
T Consensus 225 d~r~~Si~~A----v~fA~~~nL~Giv~~~~ 251 (300)
T cd08578 225 DPRSRSIKEA----VRFAKNNNLLGLILPYS 251 (300)
T ss_pred CchhhhHHHH----HHHHHHcCCcEEEecHH
Confidence 3444444444 59999999999999988
No 154
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=30.84 E-value=87 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=17.5
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
+.+++ .-.=+-+|+| .+....-.+...+|+.++++
T Consensus 78 ~~~~~-~~~~~~lD~E-~~~~~~~~~~~~~f~~~v~~ 112 (177)
T cd06523 78 NRANK-KPTFYVLDVE-VTSMSDMNAGVQAFISELRR 112 (177)
T ss_pred HHhcC-CCceEEEeec-cCCcchHHHHHHHHHHHHHH
Confidence 44444 2334789999 44432112234455555554
No 155
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=30.72 E-value=1.6e+02 Score=25.57 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 92 ~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
.-+++++...+.+.+.++..| |.+||+ ..... ..+.+.++++++-..|.+.|++...
T Consensus 63 ~~~e~~~~~~~~~~~~~~~lg---i~~d~~-~~~~t-~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (314)
T cd00812 63 DPEDWTEYNIKKMKEQLKRMG---FSYDWR-REFTT-CDPEYYKFTQWLFLKLYEKGLAYKK 119 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHhc---cceecc-ccccc-CCHHHHHHHHHHHHHHHHCCCEEec
Confidence 345677777777777888876 467887 23332 3568899999888888887765543
No 156
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=30.67 E-value=2.8e+02 Score=22.10 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
+.+....+|+|-||.. +...-. .+....+++.+....++.+..+++.
T Consensus 163 ~~l~~l~~~~ikld~~-~~~~~~-~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 163 EYLASLPPDYIKLDGS-LVRDLS-DEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp HHHHHHCGSEEEEEHH-GHTTTT-SHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred hhhhhcccccceeecc-cccccc-hhhHHHHHHHHHHHhhcccccccee
Confidence 6788889999999999 654433 5577888888888888888877774
No 157
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=30.60 E-value=2.5e+02 Score=21.52 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEE-eccCCCCCCChhhHHHHHHHHHHHHhcC
Q 046094 69 VKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDID-YEKFPMRNASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 69 ~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiD-wE~~p~~~~d~~~~~~ll~~Lr~~l~~~ 147 (245)
+-++++|-.. |....+..+++++..|....++-+-.-|.|. +-|...+-.+.+-=...|++|.+.|.+.
T Consensus 38 lVvF~~VE~~----------De~~~~~vv~~av~eI~~~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~ 107 (138)
T PF08915_consen 38 LVVFIAVEKG----------DEENPEGVVEKAVEEIKWVAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSR 107 (138)
T ss_dssp EEEEEE-BGG----------GGG-HHHHHHHHHHHHHHHHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEcCC----------CCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhC
Confidence 6667777553 3456677789999999999999999999993 2211111223335567999999999888
Q ss_pred CcEEEE
Q 046094 148 SVISVA 153 (245)
Q Consensus 148 ~~~~~~ 153 (245)
++.+.-
T Consensus 108 g~eV~r 113 (138)
T PF08915_consen 108 GFEVYR 113 (138)
T ss_dssp T-EEEE
T ss_pred CCeEEE
Confidence 876655
No 158
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=30.37 E-value=2.9e+02 Score=22.51 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.+.+..+++.- ++++++++--...|+. +. .+++.|.++ ...+.+.+.|-|||++.
T Consensus 43 ~~~l~~lr~~~-~~piI~T~R~~~eGG~-~~-~~~~~~~~l--------l~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 43 SEQLAELRRSL-DLPIIFTVRTKEEGGR-FQ-GSEEEYLEL--------LERAIRLGPDYIDIELD 97 (224)
T ss_dssp HHHHHHHHHHC-TSEEEEE--BGGGTSS-BS-S-HHHHHHH--------HHHHHHHTSSEEEEEGG
T ss_pred HHHHHHHHHhC-CCCEEEEecccccCCC-Cc-CCHHHHHHH--------HHHHHHcCCCEEEEEcc
Confidence 56677887766 8999999964332221 11 122333333 25666677999999988
No 159
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=29.94 E-value=2.1e+02 Score=22.04 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCC-eEEEEeccCCCCCCChhhHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLD-GIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~D-GvDiDwE~~p~~~~d~~~~~ 134 (245)
.+.++++.++-|+-|+++++|.=...+..|.. +.. . + .++| -|.+|.. -|+-+-..+.+.
T Consensus 72 ~~~l~~~~e~~p~pk~VIA~GsCA~~GGi~~~-~y~-~-------~---------~~v~~~ipVDi~-IPGCPp~Pe~i~ 132 (145)
T TIGR01957 72 APALRRLYDQMPEPKWVISMGACANSGGMFHT-SYS-V-------V---------QGVDRIVPVDVY-IPGCPPRPEALI 132 (145)
T ss_pred HHHHHHHHHhccCCceEEEecceeecCCCccC-CCc-c-------c---------cCcccccccceE-eCCCCCCHHHHH
Confidence 56777888888999999999963221222211 000 0 0 1111 1356667 677666667888
Q ss_pred HHHHHHHHHHhc
Q 046094 135 YCIGELITQLKN 146 (245)
Q Consensus 135 ~ll~~Lr~~l~~ 146 (245)
..+..|.+++++
T Consensus 133 ~~l~~l~~~~~~ 144 (145)
T TIGR01957 133 YGLIKLQKKIKR 144 (145)
T ss_pred HHHHHHHHHhhc
Confidence 877777777653
No 160
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=29.79 E-value=3.7e+02 Score=23.22 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCCCCcccc-CCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHW-YNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~-~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
++.+.+++|=.+.+...... .-....+.+++. ++.++++|+. +..+.- +-...++.+.+.+.++.+.+
T Consensus 136 G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~a-----i~~l~~~gi~-v~~~lI-~GlPget~e~~~~t~~~l~~ 204 (302)
T TIGR01212 136 GYEVWVELGLQTAHDKTLKKINRGHDFACYVDA-----VKRARKRGIK-VCSHVI-LGLPGEDREEMMETAKIVSL 204 (302)
T ss_pred CceEEEEEccCcCCHHHHHHHcCcChHHHHHHH-----HHHHHHcCCE-EEEeEE-ECCCCCCHHHHHHHHHHHHh
Confidence 55566788765543322221 222233344332 3778888886 777766 33233445566666666544
No 161
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=29.31 E-value=1.5e+02 Score=29.43 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 97 ISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 97 i~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
+..+.+.+.++|.+-|+|||-+|-.
T Consensus 383 ~~~FY~~~hs~Las~GVDgVKVDvQ 407 (777)
T PLN02711 383 AYQMYEGLHSHLQSVGIDGVKVDVI 407 (777)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEchh
Confidence 3445788889999999999999976
No 162
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=29.13 E-value=1.4e+02 Score=27.27 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCC-CCCChhhHHHHHHHHHHHHhcCC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEKFPM-RNASTPSFAYCIGELITQLKNQS 148 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~~p~-~~~d~~~~~~ll~~Lr~~l~~~~ 148 (245)
++.|++..+-|||||--|+=| -.+ ...+.+++.+||..+++.-.+..
T Consensus 176 A~klv~vAkyYGfdGwFINqE-T~G~~~~~a~~M~~f~ly~ke~~~~~~ 223 (553)
T COG4724 176 ARKLVDVAKYYGFDGWFINQE-TTGDVKPLAEKMRQFMLYSKEYAAKVN 223 (553)
T ss_pred HHHHHHHHHhcCcceeEeccc-ccCCCcchHHHHHHHHHHHHhcccccc
Confidence 345679999999999999988 333 23345688888888886554433
No 163
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=28.84 E-value=2.6e+02 Score=24.23 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCCC----------CCCChhhHHHHHHHHHHHHhcCCcE
Q 046094 100 AFSSLKSIIQEYHLDGIDIDYEKFPM----------RNASTPSFAYCIGELITQLKNQSVI 150 (245)
Q Consensus 100 ~~~sl~~~l~~~~~DGvDiDwE~~p~----------~~~d~~~~~~ll~~Lr~~l~~~~~~ 150 (245)
++.+=.+-|.+-|||||=||+-+ +- ..+.......|+.++++..+....+
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD-~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~ 186 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVD-AYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL 186 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeec-hHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455577888999999999762 21 1123447788888888888776544
No 164
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=28.82 E-value=3.2e+02 Score=25.09 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~ 134 (245)
.+.+..+|+. ++. -+|+|-.+.+..... ..-...++...+ .++.+++.|+..|.+|.- |-...+..+.+.
T Consensus 163 ~e~l~~l~~a--Gvn-RiSiGVQSf~d~vLk~lgR~~~~~~~~~-----~i~~l~~~g~~~v~~DlI-~GlPgqT~e~~~ 233 (449)
T PRK09058 163 DEKADAALDA--GAN-RFSIGVQSFNTQVRRRAGRKDDREEVLA-----RLEELVARDRAAVVCDLI-FGLPGQTPEIWQ 233 (449)
T ss_pred HHHHHHHHHc--CCC-EEEecCCcCCHHHHHHhCCCCCHHHHHH-----HHHHHHhCCCCcEEEEEE-eeCCCCCHHHHH
Confidence 4666667664 544 357776554332222 122233333322 237888999999999998 644444445555
Q ss_pred HHHHHHH
Q 046094 135 YCIGELI 141 (245)
Q Consensus 135 ~ll~~Lr 141 (245)
+-++.+.
T Consensus 234 ~~l~~~~ 240 (449)
T PRK09058 234 QDLAIVR 240 (449)
T ss_pred HHHHHHH
Confidence 5555544
No 165
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.73 E-value=4e+02 Score=24.32 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~ 134 (245)
..+.+..+++. ++- =+|+|=++........-.-......+. ..+..+++.||+-|.||-- |-...+ ...
T Consensus 136 ~~e~~~~l~~~--GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~----~a~~~~~~~g~~~in~DLI-yglP~Q---T~~ 204 (416)
T COG0635 136 EAEKFKALKEA--GVN-RISLGVQSFNDEVLKALGRIHDEEEAK----EAVELARKAGFTSINIDLI-YGLPGQ---TLE 204 (416)
T ss_pred CHHHHHHHHHc--CCC-EEEeccccCCHHHHHHhcCCCCHHHHH----HHHHHHHHcCCCcEEEEee-cCCCCC---CHH
Confidence 35666677665 444 467777665433222211111111222 3348999999999999998 755444 566
Q ss_pred HHHHHHHHHHh
Q 046094 135 YCIGELITQLK 145 (245)
Q Consensus 135 ~ll~~Lr~~l~ 145 (245)
.+.+.|..++.
T Consensus 205 ~~~~~l~~a~~ 215 (416)
T COG0635 205 SLKEDLEQALE 215 (416)
T ss_pred HHHHHHHHHHh
Confidence 66666666653
No 166
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=28.43 E-value=59 Score=27.54 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCceEEEEEc
Q 046094 57 DSVAAVKARHPNVKALASLS 76 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiG 76 (245)
..+..||+.||++||+++|-
T Consensus 156 ~~~~~l~~~nP~~kiilTVS 175 (251)
T PF08885_consen 156 AIIDLLRSINPDIKIILTVS 175 (251)
T ss_pred HHHHHHHhhCCCceEEEEec
Confidence 44567888999999999985
No 167
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=28.28 E-value=2.2e+02 Score=25.29 Aligned_cols=47 Identities=6% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCCC---------CCChhhHHHHHHHHHHHHhcC
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEKFPMR---------NASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~~p~~---------~~d~~~~~~ll~~Lr~~l~~~ 147 (245)
++.+...+.+-|+.||.++|...-.. .++.+.+..++..||+.+.+.
T Consensus 93 ~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 93 ARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPR 148 (345)
T ss_pred HHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCC
Confidence 55566999999999999999943221 234568899999999877554
No 168
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.14 E-value=85 Score=29.92 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCeEEEEeccCCCCC
Q 046094 102 SSLKSIIQEYHLDGIDIDYEKFPMRN 127 (245)
Q Consensus 102 ~sl~~~l~~~~~DGvDiDwE~~p~~~ 127 (245)
+|+++++.+.|+|=.-|||. .|...
T Consensus 237 ~SlVr~lv~qG~~VflIsW~-nP~~~ 261 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWR-NPDKA 261 (560)
T ss_pred chHHHHHHHcCCeEEEEeCC-CCChh
Confidence 57789999999999999999 68754
No 169
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.17 E-value=3.3e+02 Score=22.26 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=38.2
Q ss_pred HHHHHHHc------CCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcce
Q 046094 104 LKSIIQEY------HLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVD 177 (245)
Q Consensus 104 l~~~l~~~------~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD 177 (245)
|++.+.+. +=.||-+.-- =|. -...|+.++-+++++.++-+.+-..... . .+.+.++.+++|
T Consensus 24 l~~~~~~~~~f~~~sggGVt~SGG-EPl------lq~~fl~~l~~~~k~~gi~~~leTnG~~-~----~~~~~~l~~~~D 91 (213)
T PRK10076 24 LEREVMKDDIFFRTSGGGVTLSGG-EVL------MQAEFATRFLQRLRLWGVSCAIETAGDA-P----ASKLLPLAKLCD 91 (213)
T ss_pred HHHHHHhhhHhhcCCCCEEEEeCc-hHH------cCHHHHHHHHHHHHHcCCCEEEECCCCC-C----HHHHHHHHHhcC
Confidence 34555554 3468887544 133 2234555555555556654444322211 1 223377788999
Q ss_pred EEEEccCC
Q 046094 178 YVNYQFYT 185 (245)
Q Consensus 178 ~~nyd~~~ 185 (245)
.+.+|+=+
T Consensus 92 ~~l~DiK~ 99 (213)
T PRK10076 92 EVLFDLKI 99 (213)
T ss_pred EEEEeecc
Confidence 99988754
No 170
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=27.14 E-value=1.6e+02 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhcCCc--EEEEEeCC
Q 046094 123 FPMRNASTPSFAYCIGELITQLKNQSV--ISVATIAP 157 (245)
Q Consensus 123 ~p~~~~d~~~~~~ll~~Lr~~l~~~~~--~~~~~v~p 157 (245)
||...-...+++.-|.+||..|+..+. .+++|++-
T Consensus 61 W~~~~v~~~~Ltq~I~~LRr~L~d~~~~~~~I~TvPr 97 (148)
T COG3710 61 WPGRIVTVNTLTQAISALRRALRDIGDGHRLIATVPR 97 (148)
T ss_pred CCCceEccChHHHHHHHHHHHHhccCCcceEEEEeCC
Confidence 444433334699999999999998773 55666643
No 171
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=26.86 E-value=3.5e+02 Score=22.53 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCC-eEEEEeccCCCCCCChhhH
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLD-GIDIDYEKFPMRNASTPSF 133 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~D-GvDiDwE~~p~~~~d~~~~ 133 (245)
....+..+.++-|+-|++|++|.=...+..|.. +.-.. + .++| -|.+|.. -|+=+...+.+
T Consensus 85 m~~~L~rlyeqmPePK~VIA~GaCA~sGGif~~-dsy~~-------v---------~gvd~vIPVDv~-IPGCPP~PeaI 146 (225)
T CHL00023 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFST-DSYST-------V---------RGVDKLIPVDVY-LPGCPPKPEAV 146 (225)
T ss_pred cHHHHHHHHHhcCCCCeEEEEccccccCCcccC-CCccc-------c---------cCccccceeeEE-ecCCCCCHHHH
Confidence 367788888889999999999974333333331 11000 0 1111 1457777 68766666788
Q ss_pred HHHHHHHHHHHhcCC
Q 046094 134 AYCIGELITQLKNQS 148 (245)
Q Consensus 134 ~~ll~~Lr~~l~~~~ 148 (245)
...|..|+.++.++.
T Consensus 147 i~~l~~L~~ki~~~~ 161 (225)
T CHL00023 147 IDAITKLRKKISREI 161 (225)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888888887653
No 172
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=26.56 E-value=3.9e+02 Score=22.44 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcC-CCeEEEEeccCCCCCCChhhHHH
Q 046094 57 DSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYH-LDGIDIDYEKFPMRNASTPSFAY 135 (245)
Q Consensus 57 ~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~-~DGvDiDwE~~p~~~~d~~~~~~ 135 (245)
+.+..+++..+++++++++--...|+. +.. +.+.|.+. + ..+-+.+ .|-|||++. .+ . .
T Consensus 63 ~~~~~l~~~~~~~PiI~T~R~~~eGG~-~~~-~~~~~~~l----l----~~~~~~~~~d~vDiEl~-~~-----~----~ 122 (253)
T PRK02412 63 AAAPAIREKFAGKPLLFTFRTAKEGGE-IAL-SDEEYLAL----I----KAVIKSGLPDYIDVELF-SG-----K----D 122 (253)
T ss_pred HHHHHHHHhcCCCcEEEEECChhhCCC-CCC-CHHHHHHH----H----HHHHhcCCCCEEEEecc-CC-----h----H
Confidence 344566666667899999975443321 221 12222222 2 4455666 899999987 32 1 2
Q ss_pred HHHHHHHHHhcCCcEEEEEe
Q 046094 136 CIGELITQLKNQSVISVATI 155 (245)
Q Consensus 136 ll~~Lr~~l~~~~~~~~~~v 155 (245)
.++++.+..++.+..++++.
T Consensus 123 ~~~~l~~~~~~~~~kvI~S~ 142 (253)
T PRK02412 123 VVKEMVAFAHEHGVKVVLSY 142 (253)
T ss_pred HHHHHHHHHHHcCCEEEEee
Confidence 34555555555555555543
No 173
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=26.23 E-value=1.4e+02 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=25.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
+|+.|+.+ ++.+.-|++++|+||+-||--. -.. ..-+..+.+++|+
T Consensus 207 np~V~~~l----~~~~~~w~~~~giDGfRlDavk-~v~---~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREEL----KYWAKWYMETTGFDGFRLDAVK-HID---AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHH----HHHHHHHHHhcCCCEEEEhhhc-CCC---HHHHHHHHHHHHH
Confidence 44445444 3333455666999999999661 221 2234445555554
No 174
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=26.16 E-value=2.8e+02 Score=20.79 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcC
Q 046094 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 103 sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~ 147 (245)
-+.+++.+.|++.--++|+ +-. ..+.+.|++.++|+-+.+.+-
T Consensus 82 ~lke~l~elgie~eRv~~~-wiS-a~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 82 LLKELLKELGIEPERVRVL-WIS-AAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred HHHHHHHHhCCCcceEEEE-EEe-hhhHHHHHHHHHHHHHHHHHh
Confidence 3469999999999888887 433 345678888888887777653
No 175
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=26.04 E-value=66 Score=28.79 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=32.2
Q ss_pred CCcchHHHHHHHHhCCCCCCeeeeeccCCCccccchHHHHHHHHH
Q 046094 190 SPRGYLEAFKLRVEQFGREKMVPSYEVNGRGIQGQAFFDALRLLQ 234 (245)
Q Consensus 190 ~~~~~~~~~~~~~~g~~~~Kl~lGvp~yG~~~~~~~~~~~~~~~~ 234 (245)
+|+....+.....+.-+|.||+||+..|-..+...-...+++.+.
T Consensus 35 PpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE 79 (427)
T KOG1411|consen 35 PPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAE 79 (427)
T ss_pred CCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHH
Confidence 445566677777888899999999999987776544444444443
No 176
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=25.99 E-value=1.6e+02 Score=29.11 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEec
Q 046094 98 SNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 98 ~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
..+.+.+.++|.+-|+|||-+|=.
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q 390 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQ 390 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchh
Confidence 344788889999999999999977
No 177
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.96 E-value=88 Score=29.05 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCe-EEEEeccCCCCCCChhhHHHHHHHHHHHHhc
Q 046094 93 PQIWISNAFSSLKSIIQEYHLDG-IDIDYEKFPMRNASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 93 r~~fi~~~~~sl~~~l~~~~~DG-vDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~ 146 (245)
.+.|-+.++..|++++.++|||| |-+.+-+.|.+. .|....+-|-..+++
T Consensus 102 dk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k----~F~~IFK~LY~~lDp 152 (622)
T COG5185 102 DKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQK----GFIIIFKWLYLRLDP 152 (622)
T ss_pred cchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccc----cHHHHHHHHHhccCC
Confidence 34555666777889999999998 222222224332 677777777777764
No 178
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=25.81 E-value=99 Score=28.38 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHH
Q 046094 103 SLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCI 137 (245)
Q Consensus 103 sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll 137 (245)
|++.|+.+.|+|=..|+|- .|.......++...|
T Consensus 130 s~V~~l~~~g~~vfvIsw~-nPd~~~~~~~~edYi 163 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWR-NPDASLAAKNLEDYI 163 (445)
T ss_pred cHHHHHHHcCCceEEEecc-CchHhhhhccHHHHH
Confidence 4569999999999999999 798654444554433
No 179
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=25.79 E-value=1e+02 Score=24.80 Aligned_cols=68 Identities=7% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccCCCCCHHHHHHHHHhC--CCceEE-----------EEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCe
Q 046094 49 YWAETLTPDSVAAVKARH--PNVKAL-----------ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDG 115 (245)
Q Consensus 49 ~~~d~~~~~~~~~lk~~~--~~~kvl-----------lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DG 115 (245)
+|-.+...+....|.+.- ..+.|. ++||+.-.|...|+..+.++.-+|+ .+++.+++.||+=
T Consensus 79 TWI~~e~~~aY~~LH~~G~AHSvEvw~~~~LvGGlYGv~iG~~F~GESMFs~~~nASKvAl~-----~L~~~L~~~g~~l 153 (185)
T TIGR00667 79 TWISDELVEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGGLFCGESMFSRMTNASKTALL-----VFCEHFIRHGGQL 153 (185)
T ss_pred CCCCHHHHHHHHHHHHhCceEEEEEEECCEEEEeeeeeeeCCeEEeccccccCCChhHHHHH-----HHHHHHHHCCCcE
Confidence 366655566667776641 135554 7888866677778865666666663 4568999999999
Q ss_pred EEEEec
Q 046094 116 IDIDYE 121 (245)
Q Consensus 116 vDiDwE 121 (245)
+|--++
T Consensus 154 iDcQ~~ 159 (185)
T TIGR00667 154 IDCQVQ 159 (185)
T ss_pred EEECCC
Confidence 998887
No 180
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=25.54 E-value=6.5e+02 Score=24.72 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhcCC--cEEEE-E------eCCCCCCchhhHHHHHhhcCcceEEEEcc--CCCCCCCC--cchH-HH
Q 046094 132 SFAYCIGELITQLKNQS--VISVA-T------IAPFYSTALPYIKLYKDYGHVVDYVNYQF--YTDKVRSP--RGYL-EA 197 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~--~~~~~-~------v~p~~~~~~~~~~~~~~~~~~vD~~nyd~--~~~~~~~~--~~~~-~~ 197 (245)
.+..|-.+|++..++.. .+.++ - ..|....| |..-+....+..||...|. |-+....+ ..+. ++
T Consensus 513 ~l~~f~~~l~~~v~~~~~~~~~tarni~a~~~l~p~~e~w--~aQ~l~~~~~~yD~~a~mampyme~~~~~~~~~wl~~l 590 (671)
T PRK14582 513 ALTDFTLELSARVKAIRGPQVKTARNIFALPVIQPESEAW--FAQNLDDFLKSYDWTAPMAMPLMEGVAEKSSDAWLIQL 590 (671)
T ss_pred HHHHHHHHHHHHHHhhcCccceeeccccccccCChhHHHH--HHhHHHHHHhhcchhhhhcchhhhccCcccHHHHHHHH
Confidence 45678888888877632 12222 1 12221111 2111245555666666544 33332222 2222 23
Q ss_pred HHHHHhC-CCCCCeeeeeccCCCccc--------cchHHHHHHHHHHcC
Q 046094 198 FKLRVEQ-FGREKMVPSYEVNGRGIQ--------GQAFFDALRLLQANG 237 (245)
Q Consensus 198 ~~~~~~g-~~~~Kl~lGvp~yG~~~~--------~~~~~~~~~~~~~~g 237 (245)
...+.+. ...+|+++=+.. +.|. ..++.+-|+.+++.|
T Consensus 591 ~~~v~~~~~~~~k~vfelq~--~dw~~~~~~~i~~~~l~~~~~~l~~~g 637 (671)
T PRK14582 591 VNQVKNIPGALDKTIFELQA--RDWQKNGQQAISSQQLAHWMSLLQLNG 637 (671)
T ss_pred HHHHHhcCCcccceEEEeec--cccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 3333333 356899999888 5664 246688899999877
No 181
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=25.49 E-value=2.7e+02 Score=23.36 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=29.2
Q ss_pred CeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 114 DGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 114 DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
-..++-.| -|...++++.-.+.+++||+.|++.+.-.-+.
T Consensus 103 ~P~~L~iE-gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iV 142 (248)
T PF07476_consen 103 APFKLRIE-GPMDAGSREAQIEALAELREELDRRGINVEIV 142 (248)
T ss_dssp TTS-EEEE--SB--SSHHHHHHHHHHHHHHHHHCT--EEEE
T ss_pred CCCeeeee-CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 35678899 79988899999999999999999988655554
No 182
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=25.24 E-value=66 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCC
Q 046094 56 PDSVAAVKARHPNVKALASLSGWS 79 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~ 79 (245)
.+.+..|-++.|.+||++-.|||-
T Consensus 121 l~~L~~Lp~~ePrvKvVvE~Gg~R 144 (154)
T PF11909_consen 121 LEYLCNLPQREPRVKVVVEMGGDR 144 (154)
T ss_pred HHHHHhccccCCCeEEEEEeCCce
Confidence 566677778899999999999975
No 183
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=25.18 E-value=3.7e+02 Score=21.68 Aligned_cols=74 Identities=7% Similarity=0.072 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAY 135 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ 135 (245)
.+.+..+.++-|+-|+++++|.=...+..|. +-.. +..+- +-|.+|.. -|+-+...+.+..
T Consensus 88 ~~~l~r~ye~~p~pK~VIAvGsCA~~GGi~~-sy~~---------~~gv~--------~~ipVDv~-IPGCPP~Pe~il~ 148 (183)
T PRK14815 88 ALAVRRIYDQMPEPKWVIAMGACASSGGMYR-SYSV---------LQGVD--------RILPVDVY-ISGCPPRPEAILD 148 (183)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccccCCCcc-cccc---------ccCcc--------ccccccEE-ecCCCCCHHHHHH
Confidence 5778888889999999999997332222221 0000 00000 11357777 6876666778888
Q ss_pred HHHHHHHHHhcCC
Q 046094 136 CIGELITQLKNQS 148 (245)
Q Consensus 136 ll~~Lr~~l~~~~ 148 (245)
.|..|.++++.+.
T Consensus 149 ~l~~l~~~i~~~~ 161 (183)
T PRK14815 149 ALIKLQKKIDTER 161 (183)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888887653
No 184
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=25.13 E-value=5.9e+02 Score=24.04 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHhCCCceEE--EEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChh
Q 046094 54 LTPDSVAAVKARHPNVKAL--ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTP 131 (245)
Q Consensus 54 ~~~~~~~~lk~~~~~~kvl--lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~ 131 (245)
.+.+.+...|+.+..+-+| +|=||-- +. ++. +..|++++++.|..=|-|.-- .-++.....
T Consensus 93 ~l~~~~~~~~~~~~~lHl~GL~SdGgVH------------sh---~~h-l~~l~~~a~~~g~~~v~vH~~-~DGRD~~p~ 155 (501)
T TIGR01307 93 ALLGAIDRAKDNNGKLHLMGLVSDGGVH------------SH---IDH-LIALIELAAERGIEKVVLHAF-TDGRDTAPK 155 (501)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCCCc------------ch---HHH-HHHHHHHHHHcCCCeEEEEEe-cCCCCCCch
Confidence 3455666666655445443 6666632 11 222 235568999999877777655 344444444
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 046094 132 SFAYCIGELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~~~~~~~~~v~p~ 158 (245)
....+|++|-+.+.+.+..-++++...
T Consensus 156 s~~~~~~~l~~~~~~~~~~~iasv~GR 182 (501)
T TIGR01307 156 SAESYLEQLQAFLKEIGNGRIATISGR 182 (501)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCc
Confidence 777888888888875443445555443
No 185
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.95 E-value=2e+02 Score=24.82 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHcC--CCeEEEEeccCCCCCC----ChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 103 SLKSIIQEYH--LDGIDIDYEKFPMRNA----STPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 103 sl~~~l~~~~--~DGvDiDwE~~p~~~~----d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
++++-+++++ +|.|.||+. |-...+ |++.|.. .+++-+.+++.|.-+.+.+.|..
T Consensus 34 ~~~~~~~~~~iP~d~i~iD~~-w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~P~i 94 (303)
T cd06592 34 NYAQEIIDNGFPNGQIEIDDN-WETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVHPFI 94 (303)
T ss_pred HHHHHHHHcCCCCCeEEeCCC-ccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEECCee
Confidence 3347788887 789888865 322111 2333333 23333444556666666666654
No 186
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=24.81 E-value=3.2e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHcC--CCeEEEEeccCCCCCC------Chh---hHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 104 LKSIIQEYH--LDGIDIDYEKFPMRNA------STP---SFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 104 l~~~l~~~~--~DGvDiDwE~~p~~~~------d~~---~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+++-+++++ +|.+-||.. |-.... +++ +...|+++|+ +.|.-+.+-+.|..
T Consensus 29 ~~~~~~~~~iP~d~~~lD~~-w~~~~~~~~f~~d~~~FPd~~~~i~~l~----~~G~~~~~~~~P~i 90 (308)
T cd06593 29 FADGMRERNLPCDVIHLDCF-WMKEFQWCDFEFDPDRFPDPEGMLSRLK----EKGFKVCLWINPYI 90 (308)
T ss_pred HHHHHHHcCCCeeEEEEecc-cccCCcceeeEECcccCCCHHHHHHHHH----HCCCeEEEEecCCC
Confidence 347788888 898777654 321111 222 4455555554 56665555555653
No 187
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=24.69 E-value=71 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCCeEEEEeccCCCCCCChhhHHHHHHHH
Q 046094 112 HLDGIDIDYEKFPMRNASTPSFAYCIGEL 140 (245)
Q Consensus 112 ~~DGvDiDwE~~p~~~~d~~~~~~ll~~L 140 (245)
.=+-|+||+|.|+.++.|...+..||+.|
T Consensus 53 e~e~vnidFE~~~p~d~D~~giknLL~Ql 81 (308)
T KOG3034|consen 53 EDEEVNIDFEAYSPSDVDADGIKNLLQQL 81 (308)
T ss_pred ccceEeccccccCCCCcchHHHHHHHHHH
Confidence 34568999997777777777777777765
No 188
>PRK13840 sucrose phosphorylase; Provisional
Probab=24.50 E-value=2.8e+02 Score=26.06 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=37.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccC----CCCCC-ChhhHHHHHHHHHHHHhcCCcEE
Q 046094 87 WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKF----PMRNA-STPSFAYCIGELITQLKNQSVIS 151 (245)
Q Consensus 87 ~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~----p~~~~-d~~~~~~ll~~Lr~~l~~~~~~~ 151 (245)
..+|+.++.+++ ++.+..+.|.||+-||=-.| +++.. ..+.--.|++++|+.++..+..+
T Consensus 166 ~~NP~V~~~i~~-----il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~l 230 (495)
T PRK13840 166 VHSAAGWEYLMS-----ILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEV 230 (495)
T ss_pred CCCHHHHHHHHH-----HHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEE
Confidence 367777666633 33677788999999993212 32221 12344568899998887655443
No 189
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.40 E-value=4e+02 Score=24.43 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHH
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELI 141 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr 141 (245)
++.+++.|++.|.+|.. +-...+..+.+...++.+.
T Consensus 193 i~~l~~~G~~~v~~dli-~GlPgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 193 VEAARELGFTSINIDLI-YGLPKQTPESFARTLEKVL 228 (453)
T ss_pred HHHHHHcCCCcEEEEEE-ccCCCCCHHHHHHHHHHHH
Confidence 48899999998888877 5333343445555555554
No 190
>PRK03705 glycogen debranching enzyme; Provisional
Probab=24.32 E-value=92 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 97 ISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 97 i~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.+-+++++.-|+++|++||.-+|--
T Consensus 314 r~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 314 VDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 3444677789999999999999975
No 191
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.27 E-value=2.7e+02 Score=23.00 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcC-CCeEEEEeccCCCC------CCChhhHHHHHHH
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYH-LDGIDIDYEKFPMR------NASTPSFAYCIGE 139 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~-~DGvDiDwE~~p~~------~~d~~~~~~ll~~ 139 (245)
.++||+++||---.... +.+. .+-+.+++..+..+-+ .++|+|-+| |.. ....++-.+.-.+
T Consensus 118 eGl~ViaCIGE~leeRE-------aG~t--~dVv~~Ql~aiad~v~~w~niviAYE--PVWAIGTGk~atp~QaqEVh~~ 186 (247)
T KOG1643|consen 118 EGLKVIACIGETLEERE-------AGKT--LDVVFRQLKAIADKVKDWSNIVIAYE--PVWAIGTGKTATPEQAQEVHAE 186 (247)
T ss_pred cCCeEEEEecccHHhhh-------cCch--HHHHHHHHHHHHHhcCCccceEEEee--ceeeecCCCCCCHHHHHHHHHH
Confidence 39999999987432110 1111 2333455567777754 999999999 862 1123455566666
Q ss_pred HHHHHhc
Q 046094 140 LITQLKN 146 (245)
Q Consensus 140 Lr~~l~~ 146 (245)
+|.-+..
T Consensus 187 iR~wl~~ 193 (247)
T KOG1643|consen 187 IRKWLKS 193 (247)
T ss_pred HHHHHhh
Confidence 6766644
No 192
>PRK05434 phosphoglyceromutase; Provisional
Probab=24.10 E-value=6.2e+02 Score=23.92 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhCCCceE--EEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhh
Q 046094 55 TPDSVAAVKARHPNVKA--LASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPS 132 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kv--llsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~ 132 (245)
+.+.+...|+.+..+-+ |+|=||-- +. ++. +..|+++++++|+.=|-|.-- .-++......
T Consensus 98 ~~~~~~~~~~~~~~lHl~GL~SdggVH------------sh---~~h-l~~l~~~a~~~g~~~v~vH~~-~DGRD~~p~s 160 (507)
T PRK05434 98 LLDAIDKAKKNGGALHLMGLLSDGGVH------------SH---IDH-LFALLELAKEEGVKKVYVHAF-LDGRDTPPKS 160 (507)
T ss_pred HHHHHHHHHhcCCeEEEEEeccCCCcc------------cH---HHH-HHHHHHHHHHcCCCEEEEEEe-cCCCCCCchh
Confidence 34556666655433444 36656532 11 222 235568999999877777655 4444444457
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCC
Q 046094 133 FAYCIGELITQLKNQSVISVATIAPF 158 (245)
Q Consensus 133 ~~~ll~~Lr~~l~~~~~~~~~~v~p~ 158 (245)
...+|++|.+.+.+.+.--++++...
T Consensus 161 ~~~~i~~l~~~~~~~~~~~iasv~GR 186 (507)
T PRK05434 161 ALGYLEELEAKLAELGVGRIASVSGR 186 (507)
T ss_pred HHHHHHHHHHHHHHhCCeeEEEEecc
Confidence 78888888888877554445555443
No 193
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.81 E-value=2.4e+02 Score=21.42 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCeEEEE-eccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLDGIDID-YEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiD-wE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+|+.-... ...+++++++.+-.-|-|| .| |=.-..+-+....|+..||...-..+-.+++++-|..
T Consensus 56 ~Pt~L~~l----~~~i~~fl~~~~~~vViiD~lE-YL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~~~a 122 (136)
T PF05763_consen 56 SPTNLHKL----LDTIVRFLKENGNGVVIIDGLE-YLILENGFESVLKFLASLKDYALLNNGTLILVVDPEA 122 (136)
T ss_pred CchhhHHH----HHHHHHHHHhCCCcEEEEecHH-HHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEChhh
Confidence 45554444 5556799999665577777 66 6554455678889999999876555444455445543
No 194
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.65 E-value=3.4e+02 Score=21.62 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
+.+....+|.|-||.. +-....+.+.-..+++.+....+..+..+++.
T Consensus 162 ~~l~~l~~d~iKld~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 162 SYLKRLPVDLLKIDKS-FVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHhCCCCeEEECHH-HHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 6777778999999987 54332233345667788877777777766664
No 195
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.53 E-value=82 Score=27.86 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecc-C-------CCCC--CC--------h-hhHHHHHHHHHHHHhcCCcEEEEEe
Q 046094 95 IWISNAFSSLKSIIQEYHLDGIDIDYEK-F-------PMRN--AS--------T-PSFAYCIGELITQLKNQSVISVATI 155 (245)
Q Consensus 95 ~fi~~~~~sl~~~l~~~~~DGvDiDwE~-~-------p~~~--~d--------~-~~~~~ll~~Lr~~l~~~~~~~~~~v 155 (245)
..++.++++. ..+++-|||||+|.--| | |... .| + .-..++++++|++.+.. ..+.+-+
T Consensus 138 ~ii~~f~~AA-~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~-~~v~iRl 215 (343)
T cd04734 138 EIIAAFADAA-RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPD-FIVGIRI 215 (343)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC-CeEEEEe
Confidence 4444444333 45567899999999731 2 3211 11 1 23456777777776543 3333333
Q ss_pred CCCCC-----CchhhHHHHHhhcCc--ceEEEE
Q 046094 156 APFYS-----TALPYIKLYKDYGHV--VDYVNY 181 (245)
Q Consensus 156 ~p~~~-----~~~~~~~~~~~~~~~--vD~~ny 181 (245)
.+... .......+.+.+.+. +|++..
T Consensus 216 ~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 216 SGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred ehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 33221 111223443455443 788875
No 196
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.40 E-value=2.9e+02 Score=23.72 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCC---CCCC-----------------C--ccccCCCCchHHHHHHHHHHHHHHHHHcC
Q 046094 55 TPDSVAAVKARHPNVKALASLSGW---SLGS-----------------K--VLHWYNPRNPQIWISNAFSSLKSIIQEYH 112 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~---~~~~-----------------~--~~~~~~~~~r~~fi~~~~~sl~~~l~~~~ 112 (245)
..+.+..|+++ ++|+++.+-=. .... . .+...+|+.++-| .+.+.+.+.+.|
T Consensus 76 p~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w----~~~~~~~~~~~G 149 (292)
T cd06595 76 PEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAY----FDNVHRPLEKQG 149 (292)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHH----HHHHHHHHHhcC
Confidence 35667788876 89998766211 0000 0 1113566666666 445558888999
Q ss_pred CCeEEEEec
Q 046094 113 LDGIDIDYE 121 (245)
Q Consensus 113 ~DGvDiDwE 121 (245)
+||+=+|+-
T Consensus 150 idg~W~D~~ 158 (292)
T cd06595 150 VDFWWLDWQ 158 (292)
T ss_pred CcEEEecCC
Confidence 999999985
No 197
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=23.34 E-value=2.1e+02 Score=21.22 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCeEEEEecc-CCCCCCChhhHHHHHHHHHH
Q 046094 101 FSSLKSIIQEYHLDGIDIDYEK-FPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 101 ~~sl~~~l~~~~~DGvDiDwE~-~p~~~~d~~~~~~ll~~Lr~ 142 (245)
...+.+++.++|+.=+.+..+. .++...+++.|..|++.++.
T Consensus 21 ~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~ 63 (148)
T smart00857 21 LEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRA 63 (148)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 3445688899887755554451 24444468899999998876
No 198
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=23.34 E-value=1.5e+02 Score=25.05 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHh
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLK 145 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~ 145 (245)
++.+..-|||=+-||+||-|. +...++..|++...
T Consensus 31 ~Ei~A~aGfDwl~iD~EHapn------d~~sl~~qL~a~~~ 65 (255)
T COG3836 31 AEILATAGFDWLLIDGEHAPN------DLQSLLHQLQAVAA 65 (255)
T ss_pred HHHHHhcCCCEEEecccccCc------cHHHHHHHHHHhhc
Confidence 388899999999999995332 44556666665553
No 199
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=23.29 E-value=89 Score=28.12 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.2
Q ss_pred HHHHHHcCCCeEEEEe
Q 046094 105 KSIIQEYHLDGIDIDY 120 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDw 120 (245)
...+++-|||||+|.-
T Consensus 156 A~ra~~AGfDgVEih~ 171 (382)
T cd02931 156 AVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHcCCCEEEEec
Confidence 3566678999999987
No 200
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=23.24 E-value=2.9e+02 Score=23.11 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=42.0
Q ss_pred CCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhc
Q 046094 67 PNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 67 ~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~ 146 (245)
.++++++.+++... .......+.++.. ++-+-+.|.|+|++=.- .... ....+...++++++..++
T Consensus 69 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~-----v~~al~~Ga~~v~~~~~--~g~~-~~~~~~~~~~~i~~~~~~ 134 (258)
T TIGR01949 69 KDVGLIIHLSASTS------LSPDPNDKRIVTT-----VEDAIRMGADAVSIHVN--VGSD-TEWEQIRDLGMIAEICDD 134 (258)
T ss_pred CCCcEEEEEcCCCC------CCCCCCcceeeee-----HHHHHHCCCCEEEEEEe--cCCc-hHHHHHHHHHHHHHHHHH
Confidence 47888888876331 1111111112221 25566889999998654 2222 223556889999998887
Q ss_pred CCcEEEE
Q 046094 147 QSVISVA 153 (245)
Q Consensus 147 ~~~~~~~ 153 (245)
.+..+.+
T Consensus 135 ~g~~liv 141 (258)
T TIGR01949 135 WGVPLLA 141 (258)
T ss_pred cCCCEEE
Confidence 7644444
No 201
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=23.19 E-value=2.2e+02 Score=23.55 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHHHHcCCCeEEEEe-ccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 105 KSIIQEYHLDGIDIDY-EKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDw-E~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
.+.+++.||||+.|.= ..++. .... +++|++.+.+.++.++..
T Consensus 21 l~~~~~~G~~gvEi~~~~~~~~------~~~~-~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 21 LRKAAELGFDGVELSPGDLFPA------DYKE-LAELKELLADYGLEITSL 64 (274)
T ss_pred HHHHHHhCCCeEecCCcccCCc------hhhh-HHHHHHHHHHcCcEEEee
Confidence 4899999999999853 10111 1112 899999999998877663
No 202
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=23.13 E-value=4.7e+02 Score=22.27 Aligned_cols=77 Identities=13% Similarity=0.317 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChh--hHHHHHHHHHHHHh
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTP--SFAYCIGELITQLK 145 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~--~~~~ll~~Lr~~l~ 145 (245)
.+.|++|+.|.+ ...-+.|++- .+-+. -+.|.+.|++- .|......+ .-..+.+++.+..+
T Consensus 96 ~~pvi~Si~~~~----------~~~~~d~~~~-----a~~~~-~~ad~lElN~S-cPn~~~~~~~~~~~~~~~~i~~~v~ 158 (295)
T PF01180_consen 96 DIPVIASINGDS----------EEEIEDWAEL-----AKRLE-AGADALELNLS-CPNVPGGRPFGQDPELVAEIVRAVR 158 (295)
T ss_dssp CEEEEEEE-TSS----------SGHHHHHHHH-----HHHHH-HHCSEEEEEST-STTSTTSGGGGGHHHHHHHHHHHHH
T ss_pred ceeEEEEeecCC----------chhHHHHHHH-----HHHhc-CcCCceEEEee-ccCCCCccccccCHHHHHHHHHHHH
Confidence 689999998844 2233444322 24444 67999999999 887553221 22333333333332
Q ss_pred c-CCcEEEEEeCCCCCC
Q 046094 146 N-QSVISVATIAPFYST 161 (245)
Q Consensus 146 ~-~~~~~~~~v~p~~~~ 161 (245)
+ ...-+.+-++|....
T Consensus 159 ~~~~~Pv~vKL~p~~~~ 175 (295)
T PF01180_consen 159 EAVDIPVFVKLSPNFTD 175 (295)
T ss_dssp HHHSSEEEEEE-STSSC
T ss_pred hccCCCEEEEecCCCCc
Confidence 2 145566667775543
No 203
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=2.7e+02 Score=23.64 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 106 SIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 106 ~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
+...+.||.||...|- |.. ..+++++.++..++...+--.|..
T Consensus 22 ~aaa~aGF~~ve~lfP-yd~----------~~~~i~~~l~~~~L~~~Lfn~pag 64 (260)
T COG3622 22 AAAAKAGFRGVEFLFP-YDY----------DAEELKARLDFNGLTQVLFNLPAG 64 (260)
T ss_pred HHHHHcCCceEEEcCC-Ccc----------cHHHHHHHHHHcCCceeeeCCCCc
Confidence 7889999999998887 532 246788888888776655434443
No 204
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=22.92 E-value=2.5e+02 Score=24.27 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=20.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCC
Q 046094 89 NPRNPQIWISNAFSSLKSIIQEYHLD 114 (245)
Q Consensus 89 ~~~~r~~fi~~~~~sl~~~l~~~~~D 114 (245)
|-+-.-.||+.+.+-|..|+.++-+-
T Consensus 163 DqdlDvEfIe~L~~~c~~fl~~~~~~ 188 (297)
T KOG3233|consen 163 DQDLDVEFIEVLKQICVRFLESKRFP 188 (297)
T ss_pred cccccHHHHHHHHHHHHHHHHhcccc
Confidence 45566689999999999999887543
No 205
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.91 E-value=4.8e+02 Score=23.76 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCCccc-cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHH
Q 046094 56 PDSVAAVKARHPNVKALASLSGWSLGSKVLH-WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFA 134 (245)
Q Consensus 56 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~-~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~ 134 (245)
.+.+..+|+. ++. -+|||=.+.+..... ..-..+.+..+ ..++.+++.|++-|.+|.- +-...++.+.+.
T Consensus 141 ~e~l~~l~~~--G~~-rvslGvQS~~~~~L~~l~R~~~~~~~~-----~ai~~l~~~g~~~i~~dlI-~GlP~qt~e~~~ 211 (430)
T PRK08208 141 AEKLALLAAR--GVN-RLSIGVQSFHDSELHALHRPQKRADVH-----QALEWIRAAGFPILNIDLI-YGIPGQTHASWM 211 (430)
T ss_pred HHHHHHHHHc--CCC-EEEEecccCCHHHHHHhCCCCCHHHHH-----HHHHHHHHcCCCeEEEEee-cCCCCCCHHHHH
Confidence 4666677664 443 456654443222221 11122333332 2348999999998777777 543334444555
Q ss_pred HHHHHHH
Q 046094 135 YCIGELI 141 (245)
Q Consensus 135 ~ll~~Lr 141 (245)
+.++.+.
T Consensus 212 ~~l~~~~ 218 (430)
T PRK08208 212 ESLDQAL 218 (430)
T ss_pred HHHHHHH
Confidence 5555544
No 206
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.90 E-value=1.6e+02 Score=24.74 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCC
Q 046094 55 TPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPM 125 (245)
Q Consensus 55 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~ 125 (245)
..+.+..||++ ++|+++.+- |.-|+-|.+ .+.+++.+.|+||+=+|+-+ |.
T Consensus 68 p~~~i~~l~~~--g~~~~~~~~-------------P~v~~w~~~----~~~~~~~~~Gvdg~w~D~~E-~~ 118 (265)
T cd06589 68 PKSMIDELHDN--GVKLVLWID-------------PYIREWWAE----VVKKLLVSLGVDGFWTDMGE-PS 118 (265)
T ss_pred HHHHHHHHHHC--CCEEEEEeC-------------hhHHHHHHH----HHHHhhccCCCCEEeccCCC-CC
Confidence 35667788876 899998762 222665633 33466688999999999873 43
No 207
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=22.86 E-value=3.2e+02 Score=23.04 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHHHHc---CCCeEEEEeccCCC--CCCChhhHHHHHHHHHHHHhcCCcEEE
Q 046094 101 FSSLKSIIQEY---HLDGIDIDYEKFPM--RNASTPSFAYCIGELITQLKNQSVISV 152 (245)
Q Consensus 101 ~~sl~~~l~~~---~~DGvDiDwE~~p~--~~~d~~~~~~ll~~Lr~~l~~~~~~~~ 152 (245)
++.+..++++- -.||-.|+.+ -.. --+|.++=.+|++.+|+.|.+.+..+.
T Consensus 194 ~~qvl~m~~~g~v~a~dG~~v~v~-adsiCvHGD~p~Al~~~~riR~~l~~~gi~v~ 249 (252)
T COG1540 194 LAQVLQMVREGKVTAIDGEWVAVE-ADSICVHGDNPHALAFARRIRAALEAEGIKVA 249 (252)
T ss_pred HHHHHHHHhcCceEeeCCcEEeee-cceEEEcCCCHHHHHHHHHHHHHHHHcCCeee
Confidence 44555888774 4788888888 221 135788999999999999999886554
No 208
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=22.83 E-value=1.4e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=27.7
Q ss_pred EEEEeccCCCCC-------CChhhHHHHHHHHHHHHhcCCcEEEE
Q 046094 116 IDIDYEKFPMRN-------ASTPSFAYCIGELITQLKNQSVISVA 153 (245)
Q Consensus 116 vDiDwE~~p~~~-------~d~~~~~~ll~~Lr~~l~~~~~~~~~ 153 (245)
+.|+|.++-... +..+++...+++|+..|...|..+.+
T Consensus 1 L~I~w~~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l 45 (120)
T PF10865_consen 1 LVIEWQHLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRL 45 (120)
T ss_pred CeEEEEEeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 468899443331 12459999999999999999876655
No 209
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=4.7e+02 Score=22.07 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=42.2
Q ss_pred HHHHHc-CCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCCchhhHHHHHhhcCcceEEEEccC
Q 046094 106 SIIQEY-HLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQFY 184 (245)
Q Consensus 106 ~~l~~~-~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~vD~~nyd~~ 184 (245)
+..... +.+||-+.+- =|. -...++.++-.+.++.|+...+....... .....++.+++|.|++|+=
T Consensus 76 ~~~~~~~~~~gvt~SGG-EP~------~q~e~~~~~~~~ake~Gl~~~l~TnG~~~-----~~~~~~l~~~~D~v~~DlK 143 (260)
T COG1180 76 DKAFYSESGGGVTFSGG-EPT------LQAEFALDLLRAAKERGLHVALDTNGFLP-----PEALEELLPLLDAVLLDLK 143 (260)
T ss_pred HHhhhcCCCCEEEEECC-cch------hhHHHHHHHHHHHHHCCCcEEEEcCCCCC-----HHHHHHHHhhcCeEEEeec
Confidence 344444 6888988776 243 44556666666666677766664222211 1222678888999999976
Q ss_pred CC
Q 046094 185 TD 186 (245)
Q Consensus 185 ~~ 186 (245)
+.
T Consensus 144 ~~ 145 (260)
T COG1180 144 AF 145 (260)
T ss_pred cC
Confidence 53
No 210
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=95 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 90 PRNPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 90 ~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
++..++.|.|-+ ..|-+-|..|++|..|
T Consensus 147 ~eik~kiIkNsi----nvlmtRGIrGlyiyae 174 (191)
T COG3410 147 QEIKEKIIKNSI----NVLMTRGIRGLYIYAE 174 (191)
T ss_pred HHHHHHHHHHHH----HHHHhcccceEEEEEe
Confidence 334445555544 7888899999999999
No 211
>PTZ00333 triosephosphate isomerase; Provisional
Probab=22.37 E-value=3.5e+02 Score=22.94 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCC------CCChhhHHHHHHHHH
Q 046094 68 NVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR------NASTPSFAYCIGELI 141 (245)
Q Consensus 68 ~~kvllsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~------~~d~~~~~~ll~~Lr 141 (245)
+++++++||--... .+......++.+=+..+.+.+..-.+.-+-|-+| |.. ..+.+.....++.+|
T Consensus 122 gl~pIlCvGE~~~~------~~~~~~~~~v~~Ql~~~l~~v~~~~~~~iiIAYE--PvWAIGtg~~a~~e~i~~~~~~IR 193 (255)
T PTZ00333 122 GLKVILCIGETLEE------REAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYE--PVWAIGTGKVATPEQAQEVHAFIR 193 (255)
T ss_pred CCEEEEEcCCCHHH------HhCCCHHHHHHHHHHHHHhcCCHHHcceEEEEEC--CHHHhCCCCCCCHHHHHHHHHHHH
Confidence 89999999963211 1122222332221222222222223456789999 751 113345556666666
Q ss_pred HHHh
Q 046094 142 TQLK 145 (245)
Q Consensus 142 ~~l~ 145 (245)
+.+.
T Consensus 194 ~~l~ 197 (255)
T PTZ00333 194 KWLA 197 (255)
T ss_pred HHHH
Confidence 6554
No 212
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=22.36 E-value=2.6e+02 Score=29.16 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 98 SNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 98 ~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
+-+++++.-|+++|++||+-+|-.. .-+.+.+..+.+++++
T Consensus 621 k~iiDsl~yWv~ey~VDGFRfDl~g----~~d~~~~~~~~~~l~~ 661 (1111)
T TIGR02102 621 RILVDSIKYLVDEFKVDGFRFDMMG----DHDAASIEIAYKEAKA 661 (1111)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccc----cCCHHHHHHHHHHHHH
Confidence 3446788899999999999999762 1223344455555543
No 213
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.13 E-value=1.3e+02 Score=28.52 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHcCCCe-EEEEeccCCCCCCChhhHHHHHHHHHHHHhcC
Q 046094 90 PRNPQIWISNAFSSLKSIIQEYHLDG-IDIDYEKFPMRNASTPSFAYCIGELITQLKNQ 147 (245)
Q Consensus 90 ~~~r~~fi~~~~~sl~~~l~~~~~DG-vDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~ 147 (245)
|.+.++|++.++..|.+||.+||||+ |-+-.-.-|.. ..|.+..+-|-..|++.
T Consensus 65 pl~dk~~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~----KdF~~iFkfLY~~Ldp~ 119 (581)
T KOG0995|consen 65 PLSDKRYRSQCIRQIYNFLVENGFSHPISIKLLMKPSV----KDFIAIFKFLYGFLDPD 119 (581)
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCChhhhhcCCCcc----ccHHHHHHHHHhccCCC
Confidence 45666788888999999999999992 11111101222 27888888888777553
No 214
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=22.12 E-value=4.8e+02 Score=22.00 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=40.2
Q ss_pred cCCCCCHHHHHHHHHhCCCceEE--EEEcCCCCCCCccccCCCCchHHHHHHHHHHHH---HHHH-----HcCCCeEEEE
Q 046094 50 WAETLTPDSVAAVKARHPNVKAL--ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLK---SIIQ-----EYHLDGIDID 119 (245)
Q Consensus 50 ~~d~~~~~~~~~lk~~~~~~kvl--lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~---~~l~-----~~~~DGvDiD 119 (245)
+.|......+.+|+ +.+++|+| +..+- +... +..+.+.|. +|-. .+++|||=||
T Consensus 50 ~pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Y---g~R~------------~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD 113 (253)
T PF12138_consen 50 WPDANYAAAIPRLN-SYANVRVLGYVHTSY---GSRP------------LSEVKADIDTYASWYGQSEDYGYRVDGIFFD 113 (253)
T ss_pred CCCHHHHHHHHHHH-hcCCCcEEEEEEccc---cCCC------------HHHHHHHHHHHhhccccccCCCcccceEEEe
Confidence 45555566777775 46789998 33222 1111 222223333 4433 2789999998
Q ss_pred eccCCCCCCChhhHHHHHHHHHHHH
Q 046094 120 YEKFPMRNASTPSFAYCIGELITQL 144 (245)
Q Consensus 120 wE~~p~~~~d~~~~~~ll~~Lr~~l 144 (245)
=- |......+-+..+-+.+|+.+
T Consensus 114 E~--p~~~~~~~y~~~l~~~vk~~~ 136 (253)
T PF12138_consen 114 EA--PNDYANLPYYQNLYNYVKSAF 136 (253)
T ss_pred cC--CCcHHHHHHHHHHHHHHHhcc
Confidence 44 654422334444555555543
No 215
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=22.01 E-value=2.7e+02 Score=21.71 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEEEE
Q 046094 105 KSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISVAT 154 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~ 154 (245)
.++.+.+|.+++.+.-. +++.++.+.|++++...+..++.+
T Consensus 134 ~~~a~a~G~~~~~v~~~---------~~l~~~~~al~~a~~~~gp~lI~v 174 (178)
T cd02008 134 EALVRAIGVKRVVVVDP---------YDLKAIREELKEALAVPGVSVIIA 174 (178)
T ss_pred HHHHHHCCCCEEEecCc---------cCHHHHHHHHHHHHhCCCCEEEEE
Confidence 48888999988887322 267777788888887666655443
No 216
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=21.99 E-value=3.5e+02 Score=23.12 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeccCCCC-CCChhhHHHHHHHHHHHHhc
Q 046094 97 ISNAFSSLKSIIQEYHLDGIDIDYEKFPMR-NASTPSFAYCIGELITQLKN 146 (245)
Q Consensus 97 i~~~~~sl~~~l~~~~~DGvDiDwE~~p~~-~~d~~~~~~ll~~Lr~~l~~ 146 (245)
+..+++.+.+|+.++ =.=|-+|+.+++.. ....+.+..|++.|++.|+.
T Consensus 82 l~~vL~~v~~Fl~~~-~EvVil~~~~f~~~~~~~~~~h~~l~~~l~~~~g~ 131 (276)
T cd08622 82 LLTVLNDVRNFVQNT-GEIVVLDFHRFPVGFHSHPEVHDELISLLRQELGD 131 (276)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEEccCcCCCCCHHHHHHHHHHHHHHhcc
Confidence 566688889999999 66688888876632 22234678888988888865
No 217
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=21.97 E-value=1.3e+02 Score=20.53 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=32.9
Q ss_pred HHHHcCCCeEEEEecc---CCCC--------CC--ChhhHHHHHHHHHHHHhcCC--cEEEEEeCCCCCCchhhHHHHHh
Q 046094 107 IIQEYHLDGIDIDYEK---FPMR--------NA--STPSFAYCIGELITQLKNQS--VISVATIAPFYSTALPYIKLYKD 171 (245)
Q Consensus 107 ~l~~~~~DGvDiDwE~---~p~~--------~~--d~~~~~~ll~~Lr~~l~~~~--~~~~~~v~p~~~~~~~~~~~~~~ 171 (245)
++.+++.|.--+-||= .|.. .. ..+.+..++++.-+.+++.. ..+++..... . ... + .+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~--~-~~~--~-~~ 74 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG--D-WED--L-EQ 74 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S----TTH--H-HH
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC--C-HHH--H-HH
Confidence 3566777777777771 1221 01 23567788888888887643 2223322111 1 111 2 34
Q ss_pred hc-CcceEEEEcc
Q 046094 172 YG-HVVDYVNYQF 183 (245)
Q Consensus 172 ~~-~~vD~~nyd~ 183 (245)
+. +.+|++++..
T Consensus 75 ~~~~~~DvisfH~ 87 (88)
T PF12876_consen 75 LQAENLDVISFHP 87 (88)
T ss_dssp S--TT-SSEEB-E
T ss_pred hchhcCCEEeeec
Confidence 34 7888887543
No 218
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.95 E-value=4.1e+02 Score=22.96 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCC-ceEEEEEcCCCCCCCccc--cCCCCchHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046094 56 PDSVAAVKARHPN-VKALASLSGWSLGSKVLH--WYNPRNPQIWISNAFSSLKSIIQEYHLDGIDI 118 (245)
Q Consensus 56 ~~~~~~lk~~~~~-~kvllsiGG~~~~~~~~~--~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDi 118 (245)
..+++.++...+. ..+++.=-||-..+..+- ..++++.+.|++ ++..-|+..|+|=+-|
T Consensus 218 ~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~----~i~~~~~~~G~d~fvf 279 (305)
T COG5309 218 LEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQ----EILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHH----HHHhhhhccCccEEEe
Confidence 4667888877766 677888889976555544 356677777744 4457788888776544
No 219
>PLN02877 alpha-amylase/limit dextrinase
Probab=21.80 E-value=2.2e+02 Score=29.20 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 96 WISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 96 fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
..+-++.++.-|+++|++||.-+|-.
T Consensus 536 vrklIlDsl~yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 536 VDRLIVDDLLNWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 33444788899999999999999988
No 220
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=21.70 E-value=1e+02 Score=27.16 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHcCCCeEEEEecc-C-------CCCC--C-----Chh---hH-HHHHHHHHHHHhcCCcEEEEEeCCCC
Q 046094 105 KSIIQEYHLDGIDIDYEK-F-------PMRN--A-----STP---SF-AYCIGELITQLKNQSVISVATIAPFY 159 (245)
Q Consensus 105 ~~~l~~~~~DGvDiDwE~-~-------p~~~--~-----d~~---~~-~~ll~~Lr~~l~~~~~~~~~~v~p~~ 159 (245)
...+++-|||||+|.=-| | |..+ + +-+ .| .+.++++|++.++.. .+.+-+++..
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~-~v~~Rls~~~ 227 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDF-PVGVRLSPDD 227 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGG-EEEEEEETTC
T ss_pred HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCc-eEEEEEeeec
Confidence 456777899999998652 1 3211 1 122 23 456777777776653 3444445543
No 221
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=4.4e+02 Score=27.14 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=47.2
Q ss_pred HhCCCceEE-EEEcCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHH
Q 046094 64 ARHPNVKAL-ASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELIT 142 (245)
Q Consensus 64 ~~~~~~kvl-lsiGG~~~~~~~~~~~~~~~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~ 142 (245)
...|+.||+ +-||..--+ +.+.-++|+..++ .+.+++.|=|++.+-+ +. ..+|..++++.+|+
T Consensus 332 GvAPgaqIvSl~IGD~RLg-------sMETgtaltRA~~-----~v~e~~vDiINmSyGE-~a---~~pn~GRviEl~~e 395 (1304)
T KOG1114|consen 332 GVAPGAQIVSLKIGDGRLG-------SMETGTALTRAMI-----EVIEHNVDIINMSYGE-DA---HLPNSGRVIELLRE 395 (1304)
T ss_pred CCCCCCEEEEEEecCcccc-------ccccchHHHHHHH-----HHHHhcCCEEEeccCc-cC---CCCCcchHHHHHHH
Confidence 345777876 777764432 3455566755543 4556999999998762 32 23466777777777
Q ss_pred HHhcCCcEEEE
Q 046094 143 QLKNQSVISVA 153 (245)
Q Consensus 143 ~l~~~~~~~~~ 153 (245)
...+.+.+...
T Consensus 396 ~vnKr~vI~Vs 406 (1304)
T KOG1114|consen 396 LVNKRGVIYVS 406 (1304)
T ss_pred HhhhccEEEEE
Confidence 77777655443
No 222
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.13 E-value=3.3e+02 Score=19.70 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCeEEEEeccCCC-C--CCChhhHHHHHHHHHH
Q 046094 102 SSLKSIIQEYHLDGIDIDYEKFPM-R--NASTPSFAYCIGELIT 142 (245)
Q Consensus 102 ~sl~~~l~~~~~DGvDiDwE~~p~-~--~~d~~~~~~ll~~Lr~ 142 (245)
..+.+++.++|+.=+.+..| ... . ..+++.|.+|++.++.
T Consensus 21 ~~~~~~a~~~g~~i~~~~~d-~~~s~~~~~~R~~~~~ll~~~~~ 63 (137)
T cd00338 21 EALREYAARNGLEVVGEYED-AGSSATSLVDRPGLQRLLADVKA 63 (137)
T ss_pred HHHHHHHHHCCCEEEEEEEe-CCCCcccccCCHHHHHHHHHHHc
Confidence 44568888888766666666 222 2 3468899999999886
No 223
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.11 E-value=2.4e+02 Score=22.38 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=20.3
Q ss_pred HHHHHcCCC-eEEEEeccCCCCC---CChhhHHHHHHHHHHHHh
Q 046094 106 SIIQEYHLD-GIDIDYEKFPMRN---ASTPSFAYCIGELITQLK 145 (245)
Q Consensus 106 ~~l~~~~~D-GvDiDwE~~p~~~---~d~~~~~~ll~~Lr~~l~ 145 (245)
+.++.+..+ .+-+|+| ..... .++..+.+.++++.++++
T Consensus 78 ~~~~~~~~~~~~~lD~E-~~~~~~~~~~~~~~~~~~~~f~~~v~ 120 (191)
T cd06413 78 RNVPKDPGALPPVVDVE-WNGNSATCPSAEEVLAELQVFLDALE 120 (191)
T ss_pred HhcCCCCCcCCeEEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 555665544 5789999 44322 133444444444444443
No 224
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=20.95 E-value=79 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCe
Q 046094 102 SSLKSIIQEYHLDG 115 (245)
Q Consensus 102 ~sl~~~l~~~~~DG 115 (245)
.+|++|+++.||+|
T Consensus 49 sti~Rf~kkLG~~g 62 (77)
T PF01418_consen 49 STIVRFCKKLGFSG 62 (77)
T ss_dssp HHHHHHHHHCTTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 46789999999887
No 225
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=20.71 E-value=3.4e+02 Score=21.51 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=21.0
Q ss_pred HHHHHcCC-CeEEEEeccCCCCC-CC-hhhHHHHHHHHHHHH
Q 046094 106 SIIQEYHL-DGIDIDYEKFPMRN-AS-TPSFAYCIGELITQL 144 (245)
Q Consensus 106 ~~l~~~~~-DGvDiDwE~~p~~~-~d-~~~~~~ll~~Lr~~l 144 (245)
+.++.+.. .-+.||+| .+... .+ .....+|+++++++.
T Consensus 72 ~~~~~~~~~~~~~lD~E-~~~~~~~~~~~~~~~f~~~v~~~~ 112 (195)
T cd06417 72 NNIKGYVGKAVLVLDWE-SYQNSAWGNSAWARQWVNRVHELT 112 (195)
T ss_pred HHhccccCCCcEEEEee-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 55555533 35889999 44421 11 224456677776554
No 226
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=20.58 E-value=3.9e+02 Score=22.36 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCeEEEEec
Q 046094 92 NPQIWISNAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 92 ~r~~fi~~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.....+....+++++.+++-|++.||+ |-
T Consensus 145 RtNe~~~~Ya~ac~~la~e~~l~~vdl-ws 173 (245)
T KOG3035|consen 145 RTNETVGTYAKACANLAQEIGLYVVDL-WS 173 (245)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCeeeeH-Hh
Confidence 344445555678889999999999999 55
No 227
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=20.51 E-value=1.3e+02 Score=25.68 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCeEEEE-eccCCCCCC---------Ch-hhHHHHHHHHHHHHhcCCcEEEEEeCCCCC
Q 046094 103 SLKSIIQEYHLDGIDID-YEKFPMRNA---------ST-PSFAYCIGELITQLKNQSVISVATIAPFYS 160 (245)
Q Consensus 103 sl~~~l~~~~~DGvDiD-wE~~p~~~~---------d~-~~~~~ll~~Lr~~l~~~~~~~~~~v~p~~~ 160 (245)
.+..-+++.||+=+++| |++ ....- |+ +.=..|++++|.++++.|.++.|.|-|...
T Consensus 127 ~Mr~rL~~kg~~vl~~~~w~~-~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~p 194 (265)
T PF05219_consen 127 PMRWRLSKKGFTVLDIDDWQQ-TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRP 194 (265)
T ss_pred HHHHHHHhCCCeEEehhhhhc-cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccc
Confidence 44578899999988876 762 11100 11 134689999999999999988888877643
No 228
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=20.45 E-value=4.4e+02 Score=20.88 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEEcCCCCCCCccccCC--CCchHHHHHHHHHHHHHHHHHcCCC--eEEEEeccCC-CC
Q 046094 52 ETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYN--PRNPQIWISNAFSSLKSIIQEYHLD--GIDIDYEKFP-MR 126 (245)
Q Consensus 52 d~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~--~~~r~~fi~~~~~sl~~~l~~~~~D--GvDiDwE~~p-~~ 126 (245)
|+......+.++++ ++++ | .-+|.-.+ ...++. +++++ +.++.++.+ -+-||+| .. ..
T Consensus 38 D~~f~~n~~~A~~a--Gl~~-----G----~Yhf~~~~~~~~~~~Q-a~~f~----~~~~~~~~~~~~i~lDiE-~~~~~ 100 (196)
T cd06416 38 DPNSVTNIKNARAA--GLST-----D----VYFFPCINCCGSAAGQ-VQTFL----QYLKANGIKYGTVWIDIE-QNPCQ 100 (196)
T ss_pred ChHHHHHHHHHHHc--CCcc-----c----eEEEecCCCCCCHHHH-HHHHH----HHHHhCCCceeEEEEEEe-cCCCC
Confidence 55556666777665 7766 2 12333111 111111 33344 566665554 4669999 43 21
Q ss_pred -CCChhhHHHHHHHHHHHHhcCCc
Q 046094 127 -NASTPSFAYCIGELITQLKNQSV 149 (245)
Q Consensus 127 -~~d~~~~~~ll~~Lr~~l~~~~~ 149 (245)
..+......+++++-+.+++.|.
T Consensus 101 ~~~~~~~~~~~~~~f~~~~~~~G~ 124 (196)
T cd06416 101 WSSDVASNCQFLQELVSAAKALGL 124 (196)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhCC
Confidence 12333344455555444444444
No 229
>PRK09505 malS alpha-amylase; Reviewed
Probab=20.30 E-value=91 Score=30.55 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEec
Q 046094 99 NAFSSLKSIIQEYHLDGIDIDYE 121 (245)
Q Consensus 99 ~~~~sl~~~l~~~~~DGvDiDwE 121 (245)
.+++.+..|++++|+||+-||=-
T Consensus 441 yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 441 YLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred HHHHHHHHHHHhcCCCEEEEech
Confidence 33556678999999999999965
No 230
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.14 E-value=3.8e+02 Score=23.97 Aligned_cols=52 Identities=13% Similarity=0.346 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeccCCCCCCChhhHHHHHHHHHHHHhcCCcEEE
Q 046094 96 WISNAFSSLKSIIQEYHLDGIDIDYEKFPMRNASTPSFAYCIGELITQLKNQSVISV 152 (245)
Q Consensus 96 fi~~~~~sl~~~l~~~~~DGvDiDwE~~p~~~~d~~~~~~ll~~Lr~~l~~~~~~~~ 152 (245)
+++...+.+.+.+++ =|+.+||+. .... ..+.+.++++++=.+|.+.|++.-
T Consensus 84 ~~~~~~~~~~~~~~~---lgi~~Dw~~-~~~T-~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 84 WKEESGGKIREQLKR---LGASVDWSR-EYFT-MDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHH---hCceeecCC-CcCC-CCHHHHHHHHHHHHHHHHCCCEEe
Confidence 334444444444444 478899983 4333 345888888888888888776553
No 231
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=20.04 E-value=94 Score=20.76 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHhc
Q 046094 132 SFAYCIGELITQLKN 146 (245)
Q Consensus 132 ~~~~ll~~Lr~~l~~ 146 (245)
+|..||+.+|++|.+
T Consensus 60 dl~~Fl~~vR~~F~~ 74 (74)
T PF08234_consen 60 DLSKFLKRVRKAFKA 74 (74)
T ss_dssp -HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999853
Done!