BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046100
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2SYX4|MURC_BURPP UDP-N-acetylmuramate--L-alanine ligase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=murC PE=3 SV=1
Length = 467
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 11 YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPGQHSLEN 65
+ S P R + + +V+V A DG ++ ++ A + + L PG+H+++N
Sbjct: 228 FVSKPIIRYGFAPDAQVRAVNVKAHDGKMHFTAMREDAAPIDIVLNLPGEHNVQN 282
>sp|Q13TZ3|MURC_BURXL UDP-N-acetylmuramate--L-alanine ligase OS=Burkholderia xenovorans
(strain LB400) GN=murC PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 11 YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPGQHSLEN 65
+ S P R + + +V+V A DG ++ ++ A + + L PG+H+++N
Sbjct: 228 FVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVLNLPGEHNVQN 282
>sp|Q9YGT0|HXCCB_DANRE Homeobox protein Hox-C12b OS=Danio rerio GN=hoxc12b PE=2 SV=1
Length = 283
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 13 SNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPGQHSLENPSAC 69
+N T +S + +SV +TA +G N+N + + TP + + NP C
Sbjct: 108 NNSTNLISKEGALDNSSVSITAENGQNNLNGMDNGGSYSKYDCLTPAEQPIPNPRLC 164
>sp|Q04216|DLT1_YEAST Defect at low temperature protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DLT1 PE=1 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 3 ESEEYPKD---YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPG 59
+ EY +D Y+ P T + SS ST + HV++ G+ LT
Sbjct: 271 DENEYAQDDMHYFPEPPTHLVRESSISTVARHVSS-----------------GVDLTNSE 313
Query: 60 QHSLENPSACDA 71
+H L+ S C+A
Sbjct: 314 EHPLDTDSDCNA 325
>sp|C8ZEY1|DLT1_YEAS8 Defect at low temperature protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=DLT1 PE=3
SV=1
Length = 342
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 3 ESEEYPKD---YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPG 59
+ EY +D Y+ P T + SS ST + HV++ G+ LT
Sbjct: 271 DENEYAQDDMHYFPEPPTHLVRESSISTVARHVSS-----------------GVDLTNSE 313
Query: 60 QHSLENPSACDA 71
+H L+ S C+A
Sbjct: 314 EHPLDTDSDCNA 325
>sp|B3LM17|DLT1_YEAS1 Defect at low temperature protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DLT1 PE=3 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 3 ESEEYPKD---YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPG 59
+ EY +D Y+ P T + SS ST + HV++ G+ LT
Sbjct: 271 DENEYAQDDMHYFPEPPTHLVRESSISTVARHVSS-----------------GVDLTNSE 313
Query: 60 QHSLENPSACDA 71
+H L+ S C+A
Sbjct: 314 EHPLDTDSDCNA 325
>sp|A6ZMI6|DLT1_YEAS7 Defect at low temperature protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DLT1 PE=3 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 3 ESEEYPKD---YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPG 59
+ EY +D Y+ P T + SS ST + HV++ G+ LT
Sbjct: 271 DENEYAQDDMHYFPEPPTHLVRESSISTVARHVSS-----------------GVDLTNSE 313
Query: 60 QHSLENPSACDA 71
+H L+ S C+A
Sbjct: 314 EHPLDTDSDCNA 325
>sp|C7GU92|DLT1_YEAS2 Defect at low temperature protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=DLT1 PE=3 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 3 ESEEYPKD---YYSNPTTRVSSSSSSSTTSVHVTALDGIVNVNSLFTIAVFVGLSLTTPG 59
+ EY +D Y+ P T + SS ST + HV++ G+ LT
Sbjct: 271 DENEYAQDDMHYFPEPPTHLVRESSISTVARHVSS-----------------GVDLTNSE 313
Query: 60 QHSLENPSACDA 71
+H L+ S C+A
Sbjct: 314 EHPLDTDSDCNA 325
>sp|B3EFA6|SYH_CHLL2 Histidine--tRNA ligase OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=hisS PE=3 SV=1
Length = 430
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 81 VFEVVSFSFFLFSSLVAQGLKLALNLINSKDVDEAFR 117
V EV++F +F L QGLKL +N + + D + +R
Sbjct: 142 VAEVITFMMHVFEDLGLQGLKLRINTLGNMDDRKRYR 178
>sp|A8FRR0|ARNT_SHESH Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Shewanella sediminis (strain HAW-EB3)
GN=arnT PE=3 SV=1
Length = 546
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 131 GCAIGSVMGCLFL-MLSIVNVIQIRLGMLSCGSKSAVHAAAALIVLVSTALLAYIS 185
G IGSV+ C F ++S+ ++ +G L ++ ++V S A+LAYIS
Sbjct: 342 GLKIGSVINCAFFSLISVAVIVLFYMGRLPLEAEEFYRPWLLVVVCGSWAVLAYIS 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,675,686
Number of Sequences: 539616
Number of extensions: 1960942
Number of successful extensions: 6918
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6897
Number of HSP's gapped (non-prelim): 25
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)