Query 046100
Match_columns 193
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15531 Toxin_51: Putative to 44.2 26 0.00057 28.8 3.1 50 8-58 29-86 (128)
2 PF07332 DUF1469: Protein of u 43.7 1.4E+02 0.003 22.4 8.3 49 129-183 41-91 (121)
3 PF12676 DUF3796: Protein of u 34.2 2.1E+02 0.0045 22.8 6.7 28 112-139 47-74 (118)
4 PF04583 Baculo_p74: Baculovir 23.8 3.3E+02 0.0072 24.7 6.9 41 113-153 70-122 (249)
5 PF02681 DUF212: Divergent PAP 23.1 3.1E+02 0.0067 22.7 6.1 22 91-112 11-32 (141)
6 PF01560 HCV_NS1: Hepatitis C 22.3 17 0.00037 34.0 -1.5 32 91-127 13-44 (344)
7 PRK10881 putative hydrogenase 17.9 1.5E+02 0.0033 27.2 3.7 64 71-151 53-116 (394)
8 PF04306 DUF456: Protein of un 17.1 1.5E+02 0.0032 23.9 3.0 21 124-144 60-80 (140)
9 COG5567 Predicted small peripl 16.5 1.1E+02 0.0024 22.2 1.9 20 122-141 2-21 (58)
10 PF06692 MNSV_P7B: Melon necro 16.5 43 0.00093 24.4 -0.2 32 68-99 5-36 (61)
No 1
>PF15531 Toxin_51: Putative toxin 51
Probab=44.19 E-value=26 Score=28.84 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=38.4
Q ss_pred CCCCCCCC-----CCccccCCCCCcceEeeeeecceecchhh---HHHHHHhhcccCCC
Q 046100 8 PKDYYSNP-----TTRVSSSSSSSTTSVHVTALDGIVNVNSL---FTIAVFVGLSLTTP 58 (193)
Q Consensus 8 ~~~~~~~~-----~~~~~~~~s~~~t~ihvtALD~iVnVNSL---FT~AVFlGLs~~~~ 58 (193)
+++++|.+ ++.++....-+++.||| +|||+-+.+.+ |..+.+-|-.+.+.
T Consensus 29 ~~~~~~g~~~p~W~~~V~~Ai~Np~Vri~v-~lDg~~~~~~a~eaf~~~~~~g~~~~~~ 86 (128)
T PF15531_consen 29 GFSMNPGESRPDWMEPVEDAIGNPNVRIHV-SLDGMPGAENADEAFQNAYRRGAGLNGG 86 (128)
T ss_pred ccccCccccchhhHHHHHHhhcCCCcEEEE-EeccccCCccHHHHHHHHHHhccccCCc
Confidence 55556655 55566666778899999 59999999887 99999999887553
No 2
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=43.66 E-value=1.4e+02 Score=22.44 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH--hHheeecccCCcchhHhHHHHHHHHHhHHHHH
Q 046100 129 MTGCAIGSVMGCLFLMLSIVNVI--QIRLGMLSCGSKSAVHAAAALIVLVSTALLAY 183 (193)
Q Consensus 129 mL~sa~GSV~Gc~FLmlsmvnvV--QIKLG~LsCgs~~a~~AvvpLvvLV~~aLviY 183 (193)
..+.++-.++|.+|+..+++-.. ..++ ++|.....++.+.++-.+.+.+
T Consensus 41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~~------~~~~a~liv~~~~l~la~i~~~ 91 (121)
T PF07332_consen 41 LVLAAVLALLALLFLLVALVFALWEALGL------PPWLAFLIVAGLYLLLALILLL 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677777777777777 4443 3354445555555555544444
No 3
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=34.21 E-value=2.1e+02 Score=22.78 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=20.3
Q ss_pred chhHHHhhhhHHHHHHHHHHhhhhhHHH
Q 046100 112 VDEAFRAHINLKVLRFGMTGCAIGSVMG 139 (193)
Q Consensus 112 ~~e~~~a~in~~~LR~gmL~sa~GSV~G 139 (193)
.||.++.|.|+++.|..++.-...+++.
T Consensus 47 ~DErf~~n~~kAa~~af~v~l~~~~ii~ 74 (118)
T PF12676_consen 47 PDERFYENVRKAASRAFFVALILLFIIL 74 (118)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999888766555554443
No 4
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=23.78 E-value=3.3e+02 Score=24.72 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=30.7
Q ss_pred hhHHHh----hhhHHHHHHH--------HHHhhhhhHHHHHHHHHHHHHHHhH
Q 046100 113 DEAFRA----HINLKVLRFG--------MTGCAIGSVMGCLFLMLSIVNVIQI 153 (193)
Q Consensus 113 ~e~~~a----~in~~~LR~g--------mL~sa~GSV~Gc~FLmlsmvnvVQI 153 (193)
.|.+|+ .+||-+.|.. =++.+.+||.|-+...+.++|.|-.
T Consensus 70 getyKaav~h~~nr~aIkt~s~vAkal~r~~~~AaSVvgi~Li~~ti~DlvL~ 122 (249)
T PF04583_consen 70 GETYKAAVVHQLNRIAIKTVSTVAKALTRIAIAAASVVGIVLIFLTIADLVLM 122 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565 5588777763 2367788999999999999998843
No 5
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=23.08 E-value=3.1e+02 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhccCCCc
Q 046100 91 LFSSLVAQGLKLALNLINSKDV 112 (193)
Q Consensus 91 LfSSLvA~gLKl~i~l~~~~~~ 112 (193)
++|-++||.+|..++..+.+..
T Consensus 11 ~~a~~~AQ~iK~~~~~~~~r~~ 32 (141)
T PF02681_consen 11 LIAWFIAQFIKVFINYLKERKW 32 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 6788999999999998776554
No 6
>PF01560 HCV_NS1: Hepatitis C virus non-structural protein E2/NS1; InterPro: IPR002531 The hypervariable region of the E2/NS1 region of Hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein [].; PDB: 2KZQ_A 4DGV_A 4DGY_A.
Probab=22.30 E-value=17 Score=34.04 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhhccCCCchhHHHhhhhHHHHHH
Q 046100 91 LFSSLVAQGLKLALNLINSKDVDEAFRAHINLKVLRF 127 (193)
Q Consensus 91 LfSSLvA~gLKl~i~l~~~~~~~e~~~a~in~~~LR~ 127 (193)
=|.||...|=||-|.|.|++..= ||||.+|-.
T Consensus 13 gftsLFs~Gp~QnIQLINTNGSW-----HINRTALNC 44 (344)
T PF01560_consen 13 GFTSLFSPGPSQNIQLINTNGSW-----HINRTALNC 44 (344)
T ss_dssp --------------EEEEETTEE-----EEE------
T ss_pred hhhhccCCCCCCCCeEeecCccc-----ccCCCCccc
Confidence 46889999999999999996642 899988754
No 7
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=17.95 E-value=1.5e+02 Score=27.23 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.9
Q ss_pred CChhhhhheeeeeeehhhHHHHHHHHHHHHHHhhhhccCCCchhHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046100 71 AGVDVAKKLLVFEVVSFSFFLFSSLVAQGLKLALNLINSKDVDEAFRAHINLKVLRFGMTGCAIGSVMGCLFLMLSIVNV 150 (193)
Q Consensus 71 a~~~ia~~Lv~FeV~SFsfFLfSSLvA~gLKl~i~l~~~~~~~e~~~a~in~~~LR~gmL~sa~GSV~Gc~FLmlsmvnv 150 (193)
=|-.++-+++.+-.++-+-|+.|++. ++.+.|+ .+...|.+.+.+.++-++|.++|++=|=+-
T Consensus 53 WGl~I~~y~~~~vglaag~~~is~~~--------~vf~~~~---------~~~i~r~a~~~a~~~~~~a~~~l~~DLGrp 115 (394)
T PRK10881 53 WGIWIAFDVLIGTGFACGGWALAWLV--------YVFNRGQ---------YHPLVRPALLASLFGYSLGGLSITIDVGRY 115 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 46667767778888888888888876 3333333 234677788999889899999988766444
Q ss_pred H
Q 046100 151 I 151 (193)
Q Consensus 151 V 151 (193)
.
T Consensus 116 ~ 116 (394)
T PRK10881 116 W 116 (394)
T ss_pred H
Confidence 3
No 8
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=17.06 E-value=1.5e+02 Score=23.95 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q 046100 124 VLRFGMTGCAIGSVMGCLFLM 144 (193)
Q Consensus 124 ~LR~gmL~sa~GSV~Gc~FLm 144 (193)
.=|.++..|.+|.+.|.+++-
T Consensus 60 ~s~~~~~ga~iG~IvG~f~~~ 80 (140)
T PF04306_consen 60 ASRWGIWGAIIGGIVGFFVLP 80 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 557788899999999988753
No 9
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=16.48 E-value=1.1e+02 Score=22.21 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhHHHHH
Q 046100 122 LKVLRFGMTGCAIGSVMGCL 141 (193)
Q Consensus 122 ~~~LR~gmL~sa~GSV~Gc~ 141 (193)
++++|-.|++..+.|+.||+
T Consensus 2 k~~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 2 KNVFKSLLALATLFSLAGCG 21 (58)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 35677778888888999996
No 10
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=16.45 E-value=43 Score=24.39 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=24.2
Q ss_pred CCCCChhhhhheeeeeeehhhHHHHHHHHHHH
Q 046100 68 ACDAGVDVAKKLLVFEVVSFSFFLFSSLVAQG 99 (193)
Q Consensus 68 ~C~a~~~ia~~Lv~FeV~SFsfFLfSSLvA~g 99 (193)
.|+.+++-..-++.--++||-||+.++|--|+
T Consensus 5 rc~~~p~d~~~~lLiliis~~f~lI~~l~qq~ 36 (61)
T PF06692_consen 5 RCDSAPGDYSGPLLILIISFVFFLITSLGQQG 36 (61)
T ss_pred ccCCCCccchhHHHHHHHHHHHHHHhhhccCC
Confidence 47777766666667777899999999886554
Done!