Query 046100
Match_columns 193
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kix_A BM2 protein; channel, t 21.2 24 0.00083 21.8 0.4 16 82-97 5-20 (33)
2 2k42_B Espfu; WAsp, GBD, autoi 17.3 54 0.0018 20.8 1.3 11 96-106 7-17 (36)
3 4hkr_A Calcium release-activat 16.2 4.2E+02 0.014 22.4 7.0 59 112-183 104-162 (214)
4 1waz_A MERF; protein structure 14.6 23 0.0008 23.6 -0.9 15 179-193 27-41 (46)
5 2kxc_B ESPF-like protein; IRTK 12.9 78 0.0027 21.2 1.3 11 96-106 5-15 (48)
6 3arc_M Photosystem II reaction 9.4 1.9E+02 0.0065 18.2 2.1 15 168-182 9-23 (36)
7 1go9_A Corticotropin releasing 8.1 1.9E+02 0.0064 18.9 1.8 26 100-125 8-38 (42)
8 2qts_A Acid-sensing ION channe 8.0 2.9E+02 0.0097 23.7 3.4 24 129-153 404-427 (438)
9 2lif_A Core protein P21; signa 10.3 89 0.003 18.6 0.0 11 86-96 5-15 (27)
10 2jp3_A FXYD domain-containing 7.1 4.7E+02 0.016 18.4 3.6 25 119-143 11-36 (67)
No 1
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=21.21 E-value=24 Score=21.79 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.2
Q ss_pred eeeehhhHHHHHHHHH
Q 046100 82 FEVVSFSFFLFSSLVA 97 (193)
Q Consensus 82 FeV~SFsfFLfSSLvA 97 (193)
|+++|-++|.+|.|=-
T Consensus 5 ~qilsi~sfilsalhf 20 (33)
T 2kix_A 5 FQILSISSFILSALHF 20 (33)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6788999999998743
No 2
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=17.28 E-value=54 Score=20.83 Aligned_cols=11 Identities=45% Similarity=0.262 Sum_probs=9.3
Q ss_pred HHHHHHHhhhh
Q 046100 96 VAQGLKLALNL 106 (193)
Q Consensus 96 vA~gLKl~i~l 106 (193)
|||+||+++--
T Consensus 7 IAQaLk~HLAa 17 (36)
T 2k42_B 7 VAQRLMQHLAE 17 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 79999998854
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=16.16 E-value=4.2e+02 Score=22.44 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=38.1
Q ss_pred chhHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHheeecccCCcchhHhHHHHHHHHHhHHHHH
Q 046100 112 VDEAFRAHINLKVLRFGMTGCAIGSVMGCLFLMLSIVNVIQIRLGMLSCGSKSAVHAAAALIVLVSTALLAY 183 (193)
Q Consensus 112 ~~e~~~a~in~~~LR~gmL~sa~GSV~Gc~FLmlsmvnvVQIKLG~LsCgs~~a~~AvvpLvvLV~~aLviY 183 (193)
++|.++.+|-.++ ++..++|-+.+|.-++-+.=||+-..+=+ +|...-++++|..+++-
T Consensus 104 PH~r~~~yIE~AW--------~fST~lGi~LFL~evall~WVKF~~~~~~-----aa~~~t~vliPv~i~F~ 162 (214)
T 4hkr_A 104 PHERLHWYIETAW--------AFSTLLGLILFLLEIAILCWVKFYDLSRR-----AAWSATVVLIPVMIIFM 162 (214)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhheEEeecCCcH-----HHHHHHHHHHHHHHHHH
Confidence 3555555554443 45679999999999999999999876532 23333366666655543
No 4
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=14.61 E-value=23 Score=23.60 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=11.7
Q ss_pred HHHHHhhheeeeecC
Q 046100 179 ALLAYISTAIYAFWH 193 (193)
Q Consensus 179 aLviYv~~v~Yaf~~ 193 (193)
||.+|+...+||++|
T Consensus 27 aLa~Fi~lt~ya~~r 41 (46)
T 1waz_A 27 ALAIFIGLTIYAIQR 41 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888888764
No 5
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=12.90 E-value=78 Score=21.20 Aligned_cols=11 Identities=45% Similarity=0.262 Sum_probs=9.3
Q ss_pred HHHHHHHhhhh
Q 046100 96 VAQGLKLALNL 106 (193)
Q Consensus 96 vA~gLKl~i~l 106 (193)
|||+||+++--
T Consensus 5 iaQaLk~HLAA 15 (48)
T 2kxc_B 5 VAQRLMQHLAE 15 (48)
T ss_pred HHHHHHHHHHH
Confidence 79999998854
No 6
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=9.42 E-value=1.9e+02 Score=18.24 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhHHHH
Q 046100 168 AAAALIVLVSTALLA 182 (193)
Q Consensus 168 AvvpLvvLV~~aLvi 182 (193)
.++.|.+++|++.++
T Consensus 9 iAt~Lfi~iPt~FLl 23 (36)
T 3arc_M 9 IATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456789999998654
No 7
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=8.11 E-value=1.9e+02 Score=18.87 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=15.1
Q ss_pred HHHhhhhccC-----CCchhHHHhhhhHHHH
Q 046100 100 LKLALNLINS-----KDVDEAFRAHINLKVL 125 (193)
Q Consensus 100 LKl~i~l~~~-----~~~~e~~~a~in~~~L 125 (193)
+.+.+.+.+. +....+-+|+.||+.+
T Consensus 8 iDLTFHlLR~mlemar~e~~~qqA~~NR~l~ 38 (42)
T 1go9_A 8 LDLTFHLAREVLEMARAEQLAQQAHSNRKLM 38 (42)
T ss_dssp HHHHHHC-CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555554 2223466789999875
No 8
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=7.97 E-value=2.9e+02 Score=23.70 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=18.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhH
Q 046100 129 MTGCAIGSVMGCLFLMLSIVNVIQI 153 (193)
Q Consensus 129 mL~sa~GSV~Gc~FLmlsmvnvVQI 153 (193)
-|+|-+|.++| .|+=.|++-++||
T Consensus 404 ~lls~~GG~~G-LflG~S~ls~~Ei 427 (438)
T 2qts_A 404 GLLGDIGGQMG-LFIGASILTVLEL 427 (438)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH-HHhcchHHHHHHH
Confidence 57788999988 5666777777765
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=10.29 E-value=89 Score=18.63 Aligned_cols=11 Identities=45% Similarity=0.775 Sum_probs=8.1
Q ss_pred hhhHHHHHHHH
Q 046100 86 SFSFFLFSSLV 96 (193)
Q Consensus 86 SFsfFLfSSLv 96 (193)
|||.|||+-|-
T Consensus 5 sfsiFlLaLls 15 (27)
T 2lif_A 5 PFSIFLLALLS 15 (27)
Confidence 78888887654
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.11 E-value=4.7e+02 Score=18.43 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=16.7
Q ss_pred hhhHHHHHHH-HHHhhhhhHHHHHHH
Q 046100 119 HINLKVLRFG-MTGCAIGSVMGCLFL 143 (193)
Q Consensus 119 ~in~~~LR~g-mL~sa~GSV~Gc~FL 143 (193)
+-|-..||.| +..+++-.++|-+.+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHheecchhhHHHHHHHHHHHH
Confidence 4566789995 666666666665543
Done!