BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046101
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 29/329 (8%)
Query: 22 VKGIVDLGLSKVPQPYIQPQEER-------IDKKNASTCAQAPIDLSKLDGPN---HEQV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 72 AQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEKKAVYREGVSPSPLVNYR 131
+++ +A G ++NHG+P +L+E +K A FF E+K Y + + Y
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFAPEKEKALEWKDY-INMVYTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFK 190
+ A LEW+DY ++ Y + L WPK ++ +E K +R L +FK
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 185
Query: 191 NL--GVTLDESELDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDVGALTILLQDG 243
L G+ L+ L+ +G + +N+YP CP PEL +GV H+DV ALT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 244 IGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V+++GDTL+ILSNG+YKS H
Sbjct: 246 VPGLQLFYE---------GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEK 296
Query: 304 XXXXIPFFTM-PKPTVKIGPLPQLVEKEG 331
F PK + + PLP++V E
Sbjct: 297 VRISWAVFCEPPKDKIVLKPLPEMVSVES 325
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 29/329 (8%)
Query: 22 VKGIVDLGLSKVPQPYIQPQEER-------IDKKNASTCAQAPIDLSKLDGPN---HEQV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 72 AQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEKKAVYREGVSPSPLVNYR 131
+++ +A G ++NHG+P +L+E +K A FF E+K Y + + Y
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 132 TSFAPEKEKALEWKDY-INMVYTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFK 190
+ A LEW+DY ++ Y + L WPK ++ +E K +R L +FK
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 184
Query: 191 NL--GVTLDESELDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDVGALTILLQDG 243
L G+ L+ L+ +G + +N+YP CP PEL +GV H+DV ALT +L +
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244
Query: 244 IGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V+++GDTL+ILSNG+YKS H
Sbjct: 245 VPGLQLFYE---------GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEK 295
Query: 304 XXXXIPFFTM-PKPTVKIGPLPQLVEKEG 331
F PK + + PLP++V E
Sbjct: 296 VRISWAVFCEPPKDKIVLKPLPEMVSVES 324
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 155/329 (47%), Gaps = 29/329 (8%)
Query: 22 VKGIVDLGLSKVPQPYIQPQEER-------IDKKNASTCAQAPIDLSKLDGPN---HEQV 71
V+ + G+ +P+ YI+P+EE +++K IDL ++ + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 72 AQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEKKAVYREGVSPSPLVNYR 131
+++ +A G ++NHG+P +L E +K A FF E+K Y + + Y
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFAPEKEKALEWKDY-INMVYTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFK 190
+ A LEW+DY ++ Y + L WPK ++ +E K +R L +FK
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-IEATSEYAKCLRLLATKVFK 185
Query: 191 NL--GVTLDESELDAIIG-----FKMVNMNFYPTCPNPELTVGVGRHSDVGALTILLQDG 243
L G+ L+ L+ +G +N+YP CP PEL +GV H+DV ALT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX 245
Query: 244 IGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXX 303
+ GL + E G+W+ VP ++V ++GDTL+ILSNG+YKS H
Sbjct: 246 VPGLQLFYE---------GKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEK 296
Query: 304 XXXXIPFFTM-PKPTVKIGPLPQLVEKEG 331
F PK + + PLP+ V E
Sbjct: 297 VRISWAVFCEPPKDKIVLKPLPEXVSVES 325
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 26/295 (8%)
Query: 58 IDLSKLDGPNHEQVAQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEKKAV 117
I L K++G + I ACE GFF++VNHG+P E+ ++++ + + E++
Sbjct: 7 ISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR-- 64
Query: 118 YREGVSPSPLVNYRTSFAPEKEKALEWKDYINMVYTNDAEALEQWPKECNEVALEYLRTS 177
++E V+ L + ++ + ++ + ++ L++ E EV ++ +
Sbjct: 65 FKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDE---EYREVXRDFAKRL 121
Query: 178 MKMVRKLLEVLFKNLGVTLDESEL-DAIIGFKMVN----MNFYPTCPNPELTVGVGRHSD 232
K+ +LL++L +NLG L++ L +A G K N ++ YP CP P+L G+ H+D
Sbjct: 122 EKLAEELLDLLCENLG--LEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTD 179
Query: 233 VGALTILLQDG-IGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQILSNGRYK 291
G + +L QD + GL + K G+W+++PP ++V+N+GD L++++NG+YK
Sbjct: 180 AGGIILLFQDDKVSGLQLL---------KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 292 SAEHXXXXXXXXXXXXIPFFTMPKPTVKIGPLPQLVEKEGSR----FRELLFQDY 342
S H + F P I P P LVEKE + + +F DY
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 25/258 (9%)
Query: 51 STCAQAPIDLSKLDGPNHEQVAQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQ 110
ST A P+ S L + + AQ++ + E GF + ++ + +++ D+A FF
Sbjct: 3 STSAIDPVSFS-LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFAL 61
Query: 111 PSEKKAVYREGVSPSPLVNYRTSFAPEKEKALEWKDYINMVYTND----------AEALE 160
P E K Y GV F E K + D + A
Sbjct: 62 PVETKKQY-AGVKGG--ARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADN 118
Query: 161 QWPKECNEVA--LEYLRTSMKMVR-KLLEVLFKNLGVTLDESELDAIIGFKMVNMNFYPT 217
WP E + +L S+ K+LE + L + D + G ++ + YP
Sbjct: 119 VWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPP 178
Query: 218 CPNPELTVGVGRHSDVGALTILLQDGIGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVIN 277
P V G H D+ +T+LL GGL V + + G+W+ I P PG LVIN
Sbjct: 179 IPKDATGVRAGAHGDINTITLLLGAEEGGLEV--------LDRDGQWLPINPPPGCLVIN 230
Query: 278 VGDTLQILSNGRYKSAEH 295
+GD L+ L+N S H
Sbjct: 231 IGDXLERLTNNVLPSTVH 248
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 225 VGVGRHSDVGALTILLQDGIGGLYVRVEEDIPDVGKKGEWMEIPPVPGALVINVGDTLQI 284
+ H D+ +T+L GL V+ K G W+++P G ++IN+GD LQ
Sbjct: 169 IRAAAHEDINLITVLPTANEPGLQVK--------AKDGSWLDVPSDFGNIIINIGDXLQE 220
Query: 285 LSNGRYKSAEHXXX----XXXXXXXXXIPFFTMPKPTVKIGPLPQLVEKEGSRFREL 337
S+G + S H +P F P P+V + R REL
Sbjct: 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADSYLXERLREL 277
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 112/321 (34%), Gaps = 46/321 (14%)
Query: 58 IDLSKLDGPNHE---QVAQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEK 114
ID+S L G + +VAQQI A GFF VNHG+ V+ L H P EK
Sbjct: 12 IDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT-PEEK 70
Query: 115 KAVYREGVSPSPLVNYRTSF--APEKEKALEWKDYINMVYTNDAEALEQ---------WP 163
+ + R + + +KA+E Y+N +T D ++ WP
Sbjct: 71 WDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWP 130
Query: 164 KECNEVALE-YLRTSMKMVRKLLEVLFKNLGVTLDESELDAIIGFK------MVNMNFYP 216
E + + V L L K + L + E FK V + YP
Sbjct: 131 DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP 190
Query: 217 TC-PNPELTVGVGR---------HSDVGALTILLQDGIGGLYVRVEEDIPDVGKKGEWME 266
P PE + H DV +T+L Q + L V D+
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDT--- 247
Query: 267 IPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXXXXXXIPFFTMPKPTVKIGPL-PQ 325
+IN G + L+N YK+ H +PFF I P P+
Sbjct: 248 ------GYLINCGSYMAHLTNNYYKAPIH-RVKWVNAERQSLPFFVNLGYDSVIDPFDPR 300
Query: 326 LVEKEGSRFRE-LLFQDYRNN 345
E G RE L + DY N
Sbjct: 301 --EPNGKSDREPLSYGDYLQN 319
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 113/321 (35%), Gaps = 46/321 (14%)
Query: 58 IDLSKLDGPNHE---QVAQQIARACETLGFFQVVNHGVPVELLESLKDAAHTFFCQPSEK 114
ID+S L G + +VAQQI A GFF VNHG+ V+ L S K P EK
Sbjct: 12 IDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL-SQKTKEFHMSITPEEK 70
Query: 115 KAVYREGVSPSPLVNYRTSF--APEKEKALEWKDYINMVYTNDAEALEQ---------WP 163
+ + R + + +KA+E Y+N +T D ++ WP
Sbjct: 71 WDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWP 130
Query: 164 KECNEVALE-YLRTSMKMVRKLLEVLFKNLGVTLDESELDAIIGFK------MVNMNFYP 216
E + + V L L K + L + E FK V + YP
Sbjct: 131 DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP 190
Query: 217 TC-PNPELTVGVGR---------HSDVGALTILLQDGIGGLYVRVEEDIPDVGKKGEWME 266
P PE + H DV +T+L Q + L V D+
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDT--- 247
Query: 267 IPPVPGALVINVGDTLQILSNGRYKSAEHXXXXXXXXXXXXIPFFTMPKPTVKIGPL-PQ 325
+IN G + L+N YK+ H +PFF I P P+
Sbjct: 248 ------GYLINCGSYMAHLTNNYYKAPIH-RVKWVNAERQSLPFFVNLGYDSVIDPFDPR 300
Query: 326 LVEKEGSRFRE-LLFQDYRNN 345
E G RE L + DY N
Sbjct: 301 --EPNGKSDREPLSYGDYLQN 319
>pdb|1SVD|A Chain A, The Structure Of Halothiobacillus Neapolitanus Rubisco
Length = 473
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 100 LKDAAHTFFCQPSEKKAVYREGVSPSPLVNY-RTSFAPEKEKALEWKDYINMVYTNDAEA 158
++DA T Q E+K Y +P+P Y R FA E + DYI +T +
Sbjct: 214 VQDATETAEAQTGERKGHYLNVTAPTPEEMYKRAEFAKEIGAPIIMHDYITGGFTANT-G 272
Query: 159 LEQWPKECNEVALEYLRTSMKMVRK 183
L +W ++ N V L R ++ +
Sbjct: 273 LAKWCQD-NGVLLHIHRAMHAVIDR 296
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 79 CETLGFFQVVNHGVPVELLESLKDAAHTFFCQPS-------EKKAVYREGVSPSPLV 128
C +G+ +V H P ++L+ L TFFC+P +KA G S PL+
Sbjct: 125 CLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPLI 181
>pdb|2K8E|A Chain A, Solution Nmr Structure Of Protein Of Unknown Function
Yegp From E. Coli. Ontario Center For Structural
Proteomics Target Ec0640_1_123 Northeast Structural
Genomics Consortium Target Et102
Length = 130
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 6 EDRDSLFKFVVQDGNG----------VKGIVDLGLSKVPQPYIQPQEERIDKKNAS 51
+ D+ F+FV++ GNG K + G++ V PQEER +KK AS
Sbjct: 25 KSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSN--SPQEERYEKKTAS 78
>pdb|2HBV|A Chain A, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBV|B Chain B, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBX|A Chain A, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBX|B Chain B, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
Length = 334
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 152 YTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFKNLGVTLDES 199
YT +A QW + N+ ALE+ + + ++ L +V ++L + E+
Sbjct: 86 YTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEA 133
>pdb|4ERA|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERA|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERG|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERG|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERI|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERI|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
Length = 334
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 152 YTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFKNLGVTLDES 199
YT +A QW + N+ ALE+ + + ++ L +V ++L + E+
Sbjct: 86 YTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEA 133
>pdb|4EPK|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4EPK|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
Length = 334
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 152 YTNDAEALEQWPKECNEVALEYLRTSMKMVRKLLEVLFKNLGVTLDES 199
YT +A QW + N+ ALE+ + + ++ L +V ++L + E+
Sbjct: 86 YTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEA 133
>pdb|3L4B|C Chain C, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|D Chain D, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|G Chain G, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|H Chain H, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
Length = 218
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 240 LQDGIGGLYVRVEEDIPDVGKKGEWMEIPPVP--------GALVINVGDTLQILSNGR 289
L+ GI L V VEED P VGKK + + +P G LV+ GDT +ILS +
Sbjct: 142 LEQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDT-EILSGDK 198
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 40 PQEERIDKKNASTCAQAPIDLSKLDG--PNHEQVAQQIARACETLGFFQVVNH 90
P E +I ++ Q + S+ G PN E+ A+QIA C TLG + V +
Sbjct: 136 PYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRY 188
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 86 QVVNHGVPVELLESLKDAAHTFFCQPSEKKAVYREGVSPSPLVNY------RTSFAPEKE 139
Q +NH V + + A+ FFC + A + S P +N+ R+S PEK
Sbjct: 229 QKMNHSVTMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKL 288
Query: 140 KAL 142
K L
Sbjct: 289 KTL 291
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 40 PQEERIDKKNASTCAQAPIDLSKLDG--PNHEQVAQQIARACETLGFFQVVNH 90
P E +I ++ Q + S+ G PN E+ A+QIA C TLG + V +
Sbjct: 136 PYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRY 188
>pdb|2DVZ|A Chain A, Structure Of A Periplasmic Transporter
Length = 314
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 91 GVPVELLESLKDAAHTFFCQPSEKKAVYREGVSPSPLVNYRTSFAPEKEKALEW 144
G P +++ L+DAA P KA+ +G +PS N FA E ++ +W
Sbjct: 250 GTPXDVVNKLRDAAVVALKDPKVIKALDDQGSAPS--GNTPEEFAKEIKEQYDW 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,777,833
Number of Sequences: 62578
Number of extensions: 444125
Number of successful extensions: 982
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 25
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)