BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046105
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SM7|A Chain A, Solution Structure Of The Recombinant Pronapin Precursor,
           Bnib
          Length = 109

 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 49  LRHCQMFLRQQSQGGA-----WDNQQ-QHLRE-CCRQLQQLETRCRCPGLEQAVR--RXX 99
           LR CQ ++RQQ  G       W  QQ   LRE CC +L Q +  C CP L+QA +  R  
Sbjct: 15  LRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQ 74

Query: 100 XXXXXXXXXXXXXTASEIPRMCQMQPLRGCDFRSL 134
                         A  +P +C M+ +  C F ++
Sbjct: 75  GQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFIAI 109


>pdb|2LVF|A Chain A, Solution Structure Of The Brazil Nut 2s Albumin Ber E 1
          Length = 114

 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 49 LRHCQMFLRQQSQGGAWD-----NQQQHLRECCRQLQQLETRCRCPGL 91
          L HC+M++RQQ +   +        + H+ ECC QL+ ++  CRC GL
Sbjct: 18 LSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGL 65


>pdb|2DS2|B Chain B, Crystal Structure Of Mabinlin Ii
 pdb|2DS2|D Chain D, Crystal Structure Of Mabinlin Ii
          Length = 72

 Score = 32.3 bits (72), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 72  LRECCRQLQQLETRCRCPGLEQA---VRRXXXXXXXXXXXXXXXTASEIPRMCQMQPLRG 128
           LR+CC QL+Q++  C CP L QA   V +                A  +P +C +  +  
Sbjct: 7   LRQCCNQLRQVDRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPNIGA 66

Query: 129 CDFRS 133
           C FR+
Sbjct: 67  CPFRA 71


>pdb|1PNB|B Chain B, Structure Of Napin Bnib, Nmr, 10 Structures
          Length = 75

 Score = 32.0 bits (71), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 61  QGGAWDNQQQHLRE-CCRQLQQLETRCRCPGLEQAVR--RXXXXXXXXXXXXXXXTASEI 117
           Q G W      LRE CC +L Q +  C CP L+QA +  R                A  +
Sbjct: 5   QQGPW------LREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNL 58

Query: 118 PRMCQMQPLRGCDFRSL 134
           P +C M+ +  C F ++
Sbjct: 59  PNVCNMKQIGTCPFIAI 75


>pdb|1S6D|A Chain A, Structure In Solution Of A Methionine-Rich 2s Albumin
          Protein From Sunflower Seed
          Length = 103

 Score = 32.0 bits (71), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 49 LRHCQMFLR----QQSQGGAWDNQQQHLRECCRQLQQLETRCRCPGL 91
          L HC M+L     ++SQ      ++ H + CC QL+ L+ +C CP +
Sbjct: 21 LNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAI 67


>pdb|3OB4|A Chain A, Mbp-Fusion Protein Of The Major Peanut Allergen Ara H 2
          Length = 500

 Score = 30.8 bits (68), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 70  QHLRECCRQLQQLET--RCRCPGLEQAVRRXXXXXXXXXXXXX-XXTASEIPRMCQMQPL 126
           QH   CC +L + E   RC C  L+Q +                      +P+ C ++  
Sbjct: 426 QHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP 485

Query: 127 RGCDF 131
           + CD 
Sbjct: 486 QRCDL 490


>pdb|1HSS|A Chain A, 0.19 Alpha-Amylase Inhibitor From Wheat
 pdb|1HSS|B Chain B, 0.19 Alpha-Amylase Inhibitor From Wheat
 pdb|1HSS|C Chain C, 0.19 Alpha-Amylase Inhibitor From Wheat
 pdb|1HSS|D Chain D, 0.19 Alpha-Amylase Inhibitor From Wheat
          Length = 124

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 49 LRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLETRCRCPGL 91
          L  C+  LR Q  G      +  LR+CC+QL  +   CRC  L
Sbjct: 17 LPACRPLLRLQCNGS--QVPEAVLRDCCQQLAHISEWCRCGAL 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.133    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,461,971
Number of Sequences: 62578
Number of extensions: 55490
Number of successful extensions: 128
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)