Query 046105
Match_columns 138
No_of_seqs 113 out of 212
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00261 AAI_SS AAI_SS: Alpha-A 99.8 3.4E-21 7.5E-26 136.9 7.2 94 37-131 2-110 (110)
2 PF00234 Tryp_alpha_amyl: Prot 99.6 5.1E-16 1.1E-20 106.2 3.1 72 48-127 14-87 (90)
3 PF13016 Gliadin: Cys-rich Gli 99.2 8.9E-12 1.9E-16 84.6 4.0 53 46-98 12-75 (77)
4 smart00499 AAI Plant lipid tra 98.8 2.7E-09 5.9E-14 69.4 2.1 68 48-126 7-75 (79)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 96.6 0.00042 9.1E-09 44.1 -0.6 60 49-123 1-63 (63)
6 cd04660 nsLTP_like nsLTP_like: 95.8 0.0011 2.3E-08 44.0 -1.6 62 47-124 6-67 (73)
7 cd01960 nsLTP1 nsLTP1: Non-spe 95.5 0.0052 1.1E-07 41.9 0.9 69 39-126 3-79 (89)
8 PF07172 GRP: Glycine rich pro 95.3 0.013 2.9E-07 41.1 2.4 24 1-24 1-26 (95)
9 PF14368 LTP_2: Probable lipid 93.2 0.0039 8.4E-08 42.3 -4.1 49 69-125 40-91 (96)
10 cd01959 nsLTP2 nsLTP2: Non-spe 93.2 0.029 6.4E-07 36.8 0.3 62 47-129 4-66 (66)
11 PF10731 Anophelin: Thrombin i 87.6 0.57 1.2E-05 30.6 2.5 23 1-23 1-25 (65)
12 PF10669 Phage_Gp23: Protein g 67.3 5.2 0.00011 28.7 2.4 22 2-23 14-38 (121)
13 PF13956 Ibs_toxin: Toxin Ibs, 53.3 5.4 0.00012 20.0 0.3 8 1-8 1-8 (19)
14 PRK09810 entericidin A; Provis 52.8 17 0.00038 21.7 2.5 13 1-14 1-14 (41)
15 PF15240 Pro-rich: Proline-ric 51.0 13 0.00028 29.1 2.3 12 12-25 8-19 (179)
16 COG4704 Uncharacterized protei 50.9 21 0.00046 27.0 3.3 39 3-41 8-49 (151)
17 PF12782 Innate_immun: Inverte 45.5 8.7 0.00019 31.3 0.6 18 3-20 4-21 (311)
18 PRK12750 cpxP periplasmic repr 45.4 19 0.00041 27.6 2.4 23 1-23 3-26 (170)
19 PF02315 MDH: Methanol dehydro 43.0 8.2 0.00018 27.0 0.1 25 1-25 1-25 (93)
20 COG3767 Uncharacterized low-co 42.9 24 0.00051 24.7 2.3 18 1-18 1-18 (95)
21 TIGR02052 MerP mercuric transp 40.8 33 0.00072 21.2 2.7 21 1-21 1-21 (92)
22 PF13985 YbgS: YbgS-like prote 40.7 22 0.00049 26.0 2.0 10 1-10 1-10 (122)
23 PF12276 DUF3617: Protein of u 39.2 27 0.00058 25.6 2.3 14 1-14 1-14 (162)
24 PF15330 SIT: SHP2-interacting 38.5 25 0.00054 25.1 2.0 19 6-24 5-23 (107)
25 PRK10780 periplasmic chaperone 38.1 36 0.00078 25.5 2.9 27 1-28 1-27 (165)
26 PF03058 Sar8_2: Sar8.2 family 35.8 28 0.0006 24.5 1.8 23 4-26 7-29 (93)
27 PF09680 Tiny_TM_bacill: Prote 35.5 38 0.00083 18.0 1.9 14 4-17 6-19 (24)
28 PF07437 YfaZ: YfaZ precursor; 34.5 35 0.00076 26.4 2.4 8 1-8 1-8 (180)
29 PF08139 LPAM_1: Prokaryotic m 33.8 36 0.00078 18.2 1.7 6 2-7 8-13 (25)
30 TIGR02953 penta_MxKDx pentapep 33.4 41 0.00089 22.7 2.3 20 3-22 2-21 (75)
31 PF02402 Lysis_col: Lysis prot 33.3 16 0.00035 22.4 0.2 19 1-19 1-19 (46)
32 PF12393 Dr_adhesin: Dr family 33.3 59 0.0013 16.8 2.3 13 1-13 1-13 (21)
33 COG3017 LolB Outer membrane li 32.6 38 0.00081 27.1 2.3 18 2-19 5-22 (206)
34 PRK11505 hypothetical protein; 32.0 43 0.00092 24.1 2.3 20 3-22 2-21 (106)
35 TIGR01732 tiny_TM_bacill conse 31.5 55 0.0012 17.7 2.1 14 4-17 8-21 (26)
36 PF12729 4HB_MCP_1: Four helix 31.0 43 0.00092 23.5 2.2 20 3-22 7-26 (181)
37 PF10855 DUF2648: Protein of u 30.6 22 0.00047 20.3 0.5 14 1-14 1-14 (33)
38 PRK15240 resistance to complem 30.5 46 0.00099 25.7 2.4 17 1-17 1-17 (185)
39 PF10956 DUF2756: Protein of u 29.7 44 0.00095 23.9 2.0 14 1-14 1-14 (104)
40 PRK12785 fliL flagellar basal 29.2 20 0.00044 27.2 0.2 19 4-22 25-43 (166)
41 PRK09545 znuA high-affinity zi 28.5 40 0.00087 27.9 1.9 18 3-20 4-21 (311)
42 PF05984 Cytomega_UL20A: Cytom 27.9 61 0.0013 22.6 2.4 19 1-19 1-19 (100)
43 PRK10002 outer membrane protei 27.4 46 0.001 27.9 2.1 17 1-17 1-17 (362)
44 KOG3384 Selenoprotein [General 27.2 62 0.0013 24.5 2.5 16 1-16 1-16 (154)
45 COG2863 Cytochrome c553 [Energ 27.0 47 0.001 24.4 1.8 20 1-20 1-20 (121)
46 PRK15396 murein lipoprotein; P 26.2 73 0.0016 21.5 2.5 19 3-21 5-23 (78)
47 PF10690 Myticin-prepro: Mytic 25.8 23 0.0005 25.0 0.0 15 3-17 2-16 (98)
48 COG4238 Murein lipoprotein [Ce 25.8 65 0.0014 21.9 2.2 19 3-21 5-23 (78)
49 PRK05696 fliL flagellar basal 25.4 22 0.00047 26.9 -0.2 6 5-10 21-26 (170)
50 PF11839 DUF3359: Protein of u 25.3 77 0.0017 22.4 2.6 21 1-21 1-21 (96)
51 TIGR01614 PME_inhib pectineste 25.1 47 0.001 24.4 1.6 15 108-122 128-142 (178)
52 PRK15239 putative fimbrial pro 24.7 82 0.0018 24.4 3.0 9 1-9 1-9 (197)
53 PF11119 DUF2633: Protein of u 24.7 60 0.0013 21.0 1.8 13 1-13 9-21 (59)
54 PF11777 DUF3316: Protein of u 24.6 76 0.0017 22.4 2.5 8 1-8 1-8 (114)
55 PRK11566 hdeB acid-resistance 24.5 62 0.0013 23.1 2.0 15 3-17 2-16 (102)
56 PF02950 Conotoxin: Conotoxin; 24.2 25 0.00055 22.5 0.0 8 2-9 1-8 (75)
57 PRK15194 type-1 fimbrial prote 24.2 92 0.002 23.5 3.1 9 1-9 1-9 (185)
58 PLN00115 pollen allergen group 23.7 1.2E+02 0.0026 22.0 3.4 18 1-18 1-20 (118)
59 PF02203 TarH: Tar ligand bind 22.2 33 0.00072 24.7 0.3 19 3-21 10-28 (171)
60 PF10572 UPF0556: Uncharacteri 22.1 95 0.0021 23.8 2.7 30 1-31 1-30 (158)
61 PRK10894 lipopolysaccharide tr 21.7 74 0.0016 24.1 2.1 14 3-16 3-16 (180)
62 PF00879 Defensin_propep: Defe 20.6 1E+02 0.0022 19.4 2.2 9 1-9 1-9 (52)
63 PRK04405 prsA peptidylprolyl i 20.6 1.1E+02 0.0024 25.2 3.1 12 1-12 5-16 (298)
64 PRK15289 lpfA fimbrial protein 20.6 1.2E+02 0.0026 22.9 3.1 6 1-6 1-6 (190)
65 PF12606 RELT: Tumour necrosis 20.5 1.2E+02 0.0026 18.8 2.5 9 20-28 26-34 (50)
66 PRK09973 putative outer membra 20.0 1.2E+02 0.0026 20.9 2.7 21 1-21 1-22 (85)
No 1
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=99.84 E-value=3.4e-21 Score=136.88 Aligned_cols=94 Identities=38% Similarity=0.758 Sum_probs=77.3
Q ss_pred cccHHHhh-hccchhhHHHHHHHhhhCCC----C--CchhhhHHHHHHHHHcCcCCCChHHHHHHHHHHHHcC------c
Q 046105 37 QSCQEQFQ-QQQQLRHCQMFLRQQSQGGA----W--DNQQQHLRECCRQLQQLETRCRCPGLEQAVRRQQQQG------P 103 (138)
Q Consensus 37 ~~C~~q~~-~~~~L~~C~~yv~qq~~~~~----~--~~~~~~~~qCC~qL~~v~~~CrC~aL~~~~~~~~~qG------~ 103 (138)
++|+++++ +.++|++|++||++++.+.+ + .+.++++++||+||++|+++|||+||+.+|+....++ +
T Consensus 2 ~~C~~~~~~~~~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~ 81 (110)
T cd00261 2 QQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQ 81 (110)
T ss_pred CCCCcccccccccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 47998885 25899999999999987642 1 2345679999999999999999999999999987542 2
Q ss_pred hhHH-HHHHHHHHhccccCCCCC-CCCCCC
Q 046105 104 FGEQ-QEMFETASEIPRMCQMQP-LRGCDF 131 (138)
Q Consensus 104 ~~~~-~~~~~~A~~LP~~Cnl~p-~~~C~~ 131 (138)
.+.+ ++++++|++||++|||++ .+ |+|
T Consensus 82 ~~~~~~~~~~~a~~Lp~~C~~~~~~~-C~~ 110 (110)
T cd00261 82 QGQEVERMRQAAQNLPSMCNLYPPPY-CPF 110 (110)
T ss_pred CcChHHHHHHHHHhhchhcCCCCCCC-CCC
Confidence 4556 889999999999999998 55 986
No 2
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.60 E-value=5.1e-16 Score=106.16 Aligned_cols=72 Identities=38% Similarity=0.714 Sum_probs=60.1
Q ss_pred chhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcCcCCCChHHHHHHHHHHHHcC-chhHH-HHHHHHHHhccccCCCCC
Q 046105 48 QLRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLETRCRCPGLEQAVRRQQQQG-PFGEQ-QEMFETASEIPRMCQMQP 125 (138)
Q Consensus 48 ~L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v~~~CrC~aL~~~~~~~~~qG-~~~~~-~~~~~~A~~LP~~Cnl~p 125 (138)
.|.+|..|+... .++++++||++|++|+++|||++|+.+++++..++ +++++ ..++++|++||++|||++
T Consensus 14 ~l~~c~~~~~~~--------~~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~ 85 (90)
T PF00234_consen 14 RLSPCLPYLQGG--------CQQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSP 85 (90)
T ss_dssp HHHGGHHHHTTS--------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccHHHHhcc--------cccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCC
Confidence 366666666433 24678999999999999999999999999987764 66777 889999999999999997
Q ss_pred CC
Q 046105 126 LR 127 (138)
Q Consensus 126 ~~ 127 (138)
++
T Consensus 86 ~~ 87 (90)
T PF00234_consen 86 PY 87 (90)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 3
>PF13016 Gliadin: Cys-rich Gliadin N-terminal
Probab=99.23 E-value=8.9e-12 Score=84.60 Aligned_cols=53 Identities=34% Similarity=0.609 Sum_probs=46.2
Q ss_pred ccchhhHHHHHHHhhhC-C--CC--------CchhhhHHHHHHHHHcCcCCCChHHHHHHHHHH
Q 046105 46 QQQLRHCQMFLRQQSQG-G--AW--------DNQQQHLRECCRQLQQLETRCRCPGLEQAVRRQ 98 (138)
Q Consensus 46 ~~~L~~C~~yv~qq~~~-~--~~--------~~~~~~~~qCC~qL~~v~~~CrC~aL~~~~~~~ 98 (138)
+..|++|++||++++.. . |+ +++++++++||++|+.|+++|||+||+.+|+..
T Consensus 12 qqqL~pC~~fl~qQC~p~~~~p~~~s~~~q~ssCqv~qqQCCqQL~QIp~Q~RC~AI~~vv~aI 75 (77)
T PF13016_consen 12 QQQLNPCKDFLLQQCSPVMAVPFLQSQMWQQSSCQVMQQQCCQQLRQIPEQSRCQAIHSVVQAI 75 (77)
T ss_pred HHHHHHHHHHHHHhcCCcccccchhhHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 57899999999999987 2 32 446788999999999999999999999998875
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.78 E-value=2.7e-09 Score=69.37 Aligned_cols=68 Identities=29% Similarity=0.536 Sum_probs=50.4
Q ss_pred chhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcC-cCCCChHHHHHHHHHHHHcCchhHHHHHHHHHHhccccCCCCCC
Q 046105 48 QLRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQL-ETRCRCPGLEQAVRRQQQQGPFGEQQEMFETASEIPRMCQMQPL 126 (138)
Q Consensus 48 ~L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v-~~~CrC~aL~~~~~~~~~qG~~~~~~~~~~~A~~LP~~Cnl~p~ 126 (138)
.+.+|..|+.... +...+.++||++|+.+ +..|+|.+|+.++.....++ +.....|.+||+.||+.+.
T Consensus 7 ~~~~c~~~~~~~~------~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~-----~~~~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 7 QLAPCLSYLTGGS------PGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIP-----GVNAQNAASLPSACGVPPP 75 (79)
T ss_pred hHHhhHHHHcCCC------CCCCCchHHHHHHHHhcccCCcchhhhcccccccchh-----hhhHHHHHhhHHhcCCCCC
Confidence 3448999886542 1134568999999999 99999999998766543211 2456789999999999865
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=96.57 E-value=0.00042 Score=44.08 Aligned_cols=60 Identities=22% Similarity=0.504 Sum_probs=41.4
Q ss_pred hhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcCc---CCCChHHHHHHHHHHHHcCchhHHHHHHHHHHhccccCCC
Q 046105 49 LRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLE---TRCRCPGLEQAVRRQQQQGPFGEQQEMFETASEIPRMCQM 123 (138)
Q Consensus 49 L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v~---~~CrC~aL~~~~~~~~~qG~~~~~~~~~~~A~~LP~~Cnl 123 (138)
|.+|..||.-.. ..+...||..|+.+. ..|-|..|........ | -....+|..||+.||+
T Consensus 1 L~~C~~y~~~~~--------~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~--~-----~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA--------TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLL--G-----LKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC--------CCCChHHHHHHHHHHhcChhhHHHHHcCcccccc--C-----cccHHHHHhchHhcCC
Confidence 468999985221 234579999999984 6899999986443221 1 0024578899999996
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=95.83 E-value=0.0011 Score=43.96 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=42.7
Q ss_pred cchhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcCcCCCChHHHHHHHHHHHHcCchhHHHHHHHHHHhccccCCCC
Q 046105 47 QQLRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLETRCRCPGLEQAVRRQQQQGPFGEQQEMFETASEIPRMCQMQ 124 (138)
Q Consensus 47 ~~L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v~~~CrC~aL~~~~~~~~~qG~~~~~~~~~~~A~~LP~~Cnl~ 124 (138)
..|.+|..||.... +...+...||.-|+..+..|.|..+....-... ...+|..||+.||+.
T Consensus 6 ~~L~~C~~yl~~~~------~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i----------~~~~a~~Lp~~Cgv~ 67 (73)
T cd04660 6 DLLAECQPYVTGPN------PPPPPSRECCAALRRADLPCLCRYKTSLVLQII----------DPDKAVYLPAKCGLP 67 (73)
T ss_pred HHHHHHHHHHcCCC------CCCCCCHHHHHHHHcCCcCCEeeccCCCccccc----------CHHHHHHHHHHcCCC
Confidence 67899999985321 011234689999999998899998863111000 123688999999997
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=95.55 E-value=0.0052 Score=41.88 Aligned_cols=69 Identities=20% Similarity=0.381 Sum_probs=45.6
Q ss_pred cHHHhhhccchhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcCc--------CCCChHHHHHHHHHHHHcCchhHHHHH
Q 046105 39 CQEQFQQQQQLRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLE--------TRCRCPGLEQAVRRQQQQGPFGEQQEM 110 (138)
Q Consensus 39 C~~q~~~~~~L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v~--------~~CrC~aL~~~~~~~~~qG~~~~~~~~ 110 (138)
|...+ ..|.+|-.||.... ..+...||..++.+. .+|.|.-|+..+.... |+ .
T Consensus 3 C~~v~---~~l~~C~~y~~g~~--------~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~--~i------~ 63 (89)
T cd01960 3 CGQVT---SLLAPCLGYLTGGG--------PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS--GL------N 63 (89)
T ss_pred HHHHH---hhHHhHHHHHhCCC--------CCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccC--CC------C
Confidence 55443 68999999997421 223478999999864 3688877764432210 11 2
Q ss_pred HHHHHhccccCCCCCC
Q 046105 111 FETASEIPRMCQMQPL 126 (138)
Q Consensus 111 ~~~A~~LP~~Cnl~p~ 126 (138)
..+|..||+.||+...
T Consensus 64 ~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 64 PGRAAGLPGKCGVSIP 79 (89)
T ss_pred HHHHHhChHhcccCCC
Confidence 3468899999999743
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.34 E-value=0.013 Score=41.12 Aligned_cols=24 Identities=46% Similarity=0.515 Sum_probs=14.1
Q ss_pred Ch-hHHHHHH-HHHHHHHHhhccccc
Q 046105 1 MA-KLALLLA-TFTLLFLIASASIYR 24 (138)
Q Consensus 1 Ma-Kl~~~~A-lla~ll~~a~Asa~r 24 (138)
|| |.++||+ +||+||||+++.+.|
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 88 7555554 456666666555444
No 9
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=93.21 E-value=0.0039 Score=42.28 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHcC---cCCCChHHHHHHHHHHHHcCchhHHHHHHHHHHhccccCCCCC
Q 046105 69 QQHLRECCRQLQQL---ETRCRCPGLEQAVRRQQQQGPFGEQQEMFETASEIPRMCQMQP 125 (138)
Q Consensus 69 ~~~~~qCC~qL~~v---~~~CrC~aL~~~~~~~~~qG~~~~~~~~~~~A~~LP~~Cnl~p 125 (138)
..+...||+.|+.+ +..|-|..+.... ...-|+ -..+|..||..||+..
T Consensus 40 ~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~i------n~~~a~~Lp~~Cg~~~ 91 (96)
T PF14368_consen 40 PAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGI------NVTRALALPAACGVPV 91 (96)
T ss_dssp ----HHHHHHHCC----HCCHHHCCCC-CC--HCHHCC------TCHHHHHHHHHCTSS-
T ss_pred CCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCc------CHHHHHHHHHHcCCCC
Confidence 34568999999998 7999999987533 000111 1236889999999974
No 10
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=93.15 E-value=0.029 Score=36.79 Aligned_cols=62 Identities=18% Similarity=0.398 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHhhhCCCCCchhhhHHHHHHHHHcCcCCCChHHHHH-HHHHHHHcCchhHHHHHHHHHHhccccCCCCC
Q 046105 47 QQLRHCQMFLRQQSQGGAWDNQQQHLRECCRQLQQLETRCRCPGLEQ-AVRRQQQQGPFGEQQEMFETASEIPRMCQMQP 125 (138)
Q Consensus 47 ~~L~~C~~yv~qq~~~~~~~~~~~~~~qCC~qL~~v~~~CrC~aL~~-~~~~~~~qG~~~~~~~~~~~A~~LP~~Cnl~p 125 (138)
..|.+|..+|... ..+..+||..|+.-+ .|-|+-++. .+.... ....|+.||..|||+-
T Consensus 4 ~~L~~C~~ai~~~---------~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~i----------~~~~A~~l~~~Cgv~~ 63 (66)
T cd01959 4 TQLSPCLPAILGG---------SPPSAACCAKLKEQQ-SCLCQYAKNPSLKQYV----------NSPNARKVLAACGVPY 63 (66)
T ss_pred hhcccCHHHHhCC---------CCCCHHHHHHHhcCC-CCeeeeecCccHHhhc----------CcHHHHHHHHHcCCCC
Confidence 3578899998742 224579999999976 899998752 122111 1125889999999985
Q ss_pred CCCC
Q 046105 126 LRGC 129 (138)
Q Consensus 126 ~~~C 129 (138)
+. |
T Consensus 64 P~-C 66 (66)
T cd01959 64 PN-C 66 (66)
T ss_pred CC-C
Confidence 54 5
No 11
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=87.61 E-value=0.57 Score=30.55 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=13.1
Q ss_pred Ch-hHHHHHHHHHHHHHHhh-cccc
Q 046105 1 MA-KLALLLATFTLLFLIAS-ASIY 23 (138)
Q Consensus 1 Ma-Kl~~~~Alla~ll~~a~-Asa~ 23 (138)
|| |||+++-|-++|++++. |.-|
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQY 25 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQY 25 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCccc
Confidence 88 88776655555554433 3334
No 12
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=67.30 E-value=5.2 Score=28.67 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHH---HHhhcccc
Q 046105 2 AKLALLLATFTLLF---LIASASIY 23 (138)
Q Consensus 2 aKl~~~~Alla~ll---~~a~Asa~ 23 (138)
||..||++|+++++ |+..+++|
T Consensus 14 ~K~~~FA~L~i~~FiILLIi~~~IW 38 (121)
T PF10669_consen 14 TKIMFFAFLFIVVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778777765543 45777775
No 13
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=53.26 E-value=5.4 Score=19.98 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=5.7
Q ss_pred ChhHHHHH
Q 046105 1 MAKLALLL 8 (138)
Q Consensus 1 MaKl~~~~ 8 (138)
|.|+++++
T Consensus 1 MMk~vIIl 8 (19)
T PF13956_consen 1 MMKLVIIL 8 (19)
T ss_pred CceehHHH
Confidence 77877664
No 14
>PRK09810 entericidin A; Provisional
Probab=52.79 E-value=17 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.9
Q ss_pred Ch-hHHHHHHHHHHH
Q 046105 1 MA-KLALLLATFTLL 14 (138)
Q Consensus 1 Ma-Kl~~~~Alla~l 14 (138)
|. |+++++ +++++
T Consensus 1 mMkk~~~l~-~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLV-LLAST 14 (41)
T ss_pred ChHHHHHHH-HHHHH
Confidence 55 444444 44444
No 15
>PF15240 Pro-rich: Proline-rich
Probab=51.01 E-value=13 Score=29.05 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=5.5
Q ss_pred HHHHHHhhcccccc
Q 046105 12 TLLFLIASASIYRT 25 (138)
Q Consensus 12 a~ll~~a~Asa~r~ 25 (138)
||||+++ ||.++
T Consensus 8 vALLALS--SAQ~~ 19 (179)
T PF15240_consen 8 VALLALS--SAQST 19 (179)
T ss_pred HHHHHhh--hcccc
Confidence 4444455 44443
No 16
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.94 E-value=21 Score=26.98 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHhhccccc--ceeeecCC-CCCccccHH
Q 046105 3 KLALLLATFTLLFLIASASIYR--TTVEVDEE-NPRGQSCQE 41 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~Asa~r--~~~~~~~~-~~~~~~C~~ 41 (138)
++++++|+++++.+-+.|+... -||+|+.- |..++-|-.
T Consensus 8 ~l~Ll~aa~sL~~~~aaaaeatgkLTvti~glknkqGqic~a 49 (151)
T COG4704 8 RLFLLAAALSLVSLKAAAAEATGKLTVTINGLKNKQGQICFA 49 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHhhcCceEEEEcchhhccCcEEEE
Confidence 3566666666555444444333 25556654 444445543
No 17
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=45.51 E-value=8.7 Score=31.26 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 046105 3 KLALLLATFTLLFLIASA 20 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~A 20 (138)
|.++++|++|||.+.|+|
T Consensus 4 kvtlivaivaalaisaha 21 (311)
T PF12782_consen 4 KVTLIVAIVAALAISAHA 21 (311)
T ss_pred eEEehHHHHHHHHHHHhh
Confidence 788888888887444444
No 18
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=45.36 E-value=19 Score=27.61 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=9.7
Q ss_pred Ch-hHHHHHHHHHHHHHHhhcccc
Q 046105 1 MA-KLALLLATFTLLFLIASASIY 23 (138)
Q Consensus 1 Ma-Kl~~~~Alla~ll~~a~Asa~ 23 (138)
|+ ||++.+++++++|-.++|.++
T Consensus 3 ~~kkl~~~~v~~~l~lg~~sa~a~ 26 (170)
T PRK12750 3 LAKKLVLAAVVLPLTLGTASAFAF 26 (170)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55 455554433333223433343
No 19
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=43.00 E-value=8.2 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=0.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcccccc
Q 046105 1 MAKLALLLATFTLLFLIASASIYRT 25 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~Asa~r~ 25 (138)
|-++++++++++++.+...|-||-.
T Consensus 1 Mk~~~~~~~~~~~~~~a~~A~AYDG 25 (93)
T PF02315_consen 1 MKTVLLAAAAAAALATAGAALAYDG 25 (93)
T ss_dssp ------------------------S
T ss_pred ChhhHHHHHHHHHHhcchhhhhccC
Confidence 3344444443343334455667743
No 20
>COG3767 Uncharacterized low-complexity protein [Function unknown]
Probab=42.86 E-value=24 Score=24.70 Aligned_cols=18 Identities=44% Similarity=0.265 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHHHHh
Q 046105 1 MAKLALLLATFTLLFLIA 18 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a 18 (138)
|-|+++..++..+|++.+
T Consensus 1 mkk~~~~~alagA~~l~~ 18 (95)
T COG3767 1 MKKLATAAALAGALLLGA 18 (95)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 789988888887776543
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=40.80 E-value=33 Score=21.24 Aligned_cols=21 Identities=57% Similarity=0.512 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcc
Q 046105 1 MAKLALLLATFTLLFLIASAS 21 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~As 21 (138)
|-||.-++++|.++.+.+-|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWAA 21 (92)
T ss_pred ChhHHHHHHHHHHhcchhhhc
Confidence 667777766665554444443
No 22
>PF13985 YbgS: YbgS-like protein
Probab=40.65 E-value=22 Score=26.02 Aligned_cols=10 Identities=60% Similarity=0.683 Sum_probs=7.2
Q ss_pred ChhHHHHHHH
Q 046105 1 MAKLALLLAT 10 (138)
Q Consensus 1 MaKl~~~~Al 10 (138)
|-||++++..
T Consensus 1 M~Klatl~LT 10 (122)
T PF13985_consen 1 MTKLATLFLT 10 (122)
T ss_pred CchHHHHHHH
Confidence 7798877644
No 23
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=39.17 E-value=27 Score=25.59 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=6.5
Q ss_pred ChhHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLL 14 (138)
Q Consensus 1 MaKl~~~~Alla~l 14 (138)
|-|++++++++++|
T Consensus 1 M~~~~~~~~~~~~~ 14 (162)
T PF12276_consen 1 MKRRLLLALALALL 14 (162)
T ss_pred CchHHHHHHHHHHH
Confidence 44555554444443
No 24
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=38.52 E-value=25 Score=25.07 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhccccc
Q 046105 6 LLLATFTLLFLIASASIYR 24 (138)
Q Consensus 6 ~~~Alla~ll~~a~Asa~r 24 (138)
.++|+|.++++++|=++||
T Consensus 5 ~il~llLll~l~asl~~wr 23 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444566666665
No 25
>PRK10780 periplasmic chaperone; Provisional
Probab=38.13 E-value=36 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.053 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHHHHhhcccccceee
Q 046105 1 MAKLALLLATFTLLFLIASASIYRTTVE 28 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~Asa~r~~~~ 28 (138)
|-||+.+++++.++++.++|++ -+.|+
T Consensus 1 Mkk~~~~~~l~l~~~~~~~a~a-~~KIg 27 (165)
T PRK10780 1 MKKWLLAAGLGLALATSAGAQA-ADKIA 27 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-hcCeE
Confidence 6677766554333333333333 23454
No 26
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=35.81 E-value=28 Score=24.46 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhcccccce
Q 046105 4 LALLLATFTLLFLIASASIYRTT 26 (138)
Q Consensus 4 l~~~~Alla~ll~~a~Asa~r~~ 26 (138)
|++.+.|..+|+++++-.+.|+.
T Consensus 7 lfl~lSLailLmIISSqv~AREm 29 (93)
T PF03058_consen 7 LFLCLSLAILLMIISSQVDAREM 29 (93)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555554444445443334654
No 27
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=35.50 E-value=38 Score=18.02 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 046105 4 LALLLATFTLLFLI 17 (138)
Q Consensus 4 l~~~~Alla~ll~~ 17 (138)
+.+++.|+++|+.+
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 45566666666533
No 28
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=34.49 E-value=35 Score=26.36 Aligned_cols=8 Identities=38% Similarity=0.360 Sum_probs=5.5
Q ss_pred ChhHHHHH
Q 046105 1 MAKLALLL 8 (138)
Q Consensus 1 MaKl~~~~ 8 (138)
|.|+.+..
T Consensus 1 m~k~~~a~ 8 (180)
T PF07437_consen 1 MKKFLLAS 8 (180)
T ss_pred CchHHHHH
Confidence 78877654
No 29
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.83 E-value=36 Score=18.25 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.8
Q ss_pred hhHHHH
Q 046105 2 AKLALL 7 (138)
Q Consensus 2 aKl~~~ 7 (138)
-|++++
T Consensus 8 Kkil~~ 13 (25)
T PF08139_consen 8 KKILFP 13 (25)
T ss_pred HHHHHH
Confidence 355444
No 30
>TIGR02953 penta_MxKDx pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.
Probab=33.40 E-value=41 Score=22.70 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHhhccc
Q 046105 3 KLALLLATFTLLFLIASASI 22 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~Asa 22 (138)
||++.+.++++++++++|.+
T Consensus 2 ki~~a~~aaal~~~a~~A~a 21 (75)
T TIGR02953 2 RIVAAISAAAFLSLAPAALA 21 (75)
T ss_pred hHHHHHHHHHHHHHhHHhhh
Confidence 44443333333333344444
No 31
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=33.32 E-value=16 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=10.0
Q ss_pred ChhHHHHHHHHHHHHHHhh
Q 046105 1 MAKLALLLATFTLLFLIAS 19 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~ 19 (138)
|-|++++..+++.++|++.
T Consensus 1 MkKi~~~~i~~~~~~L~aC 19 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAAC 19 (46)
T ss_pred CcEEEEeHHHHHHHHHHHh
Confidence 6676655555444444443
No 32
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=33.31 E-value=59 Score=16.76 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHH
Q 046105 1 MAKLALLLATFTL 13 (138)
Q Consensus 1 MaKl~~~~Alla~ 13 (138)
|-||.+.+|....
T Consensus 1 MKklaiMaa~s~~ 13 (21)
T PF12393_consen 1 MKKLAIMAAASMM 13 (21)
T ss_pred CchHHHHHHHHHH
Confidence 6788888775443
No 33
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=32.63 E-value=38 Score=27.10 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 046105 2 AKLALLLATFTLLFLIAS 19 (138)
Q Consensus 2 aKl~~~~Alla~ll~~a~ 19 (138)
.++.++++++|.|||.|.
T Consensus 5 ~~~~~~l~~~As~LL~aC 22 (206)
T COG3017 5 KRLLFLLLALASLLLTAC 22 (206)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555656666655443
No 34
>PRK11505 hypothetical protein; Provisional
Probab=32.04 E-value=43 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.364 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHhhccc
Q 046105 3 KLALLLATFTLLFLIASASI 22 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~Asa 22 (138)
|+++++.+++.++|++++.+
T Consensus 2 k~~~l~~ll~g~~~~~~~~A 21 (106)
T PRK11505 2 KITLLVTLLFGLVFLTTVGA 21 (106)
T ss_pred chHHHHHHHHHHHHhhhhcc
Confidence 67777767776666655443
No 35
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.51 E-value=55 Score=17.74 Aligned_cols=14 Identities=36% Similarity=0.766 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 046105 4 LALLLATFTLLFLI 17 (138)
Q Consensus 4 l~~~~Alla~ll~~ 17 (138)
+.+++.||++|+.+
T Consensus 8 f~livVLFILLIIi 21 (26)
T TIGR01732 8 FALIVVLFILLVIV 21 (26)
T ss_pred hHHHHHHHHHHHHh
Confidence 45666677766543
No 36
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=30.99 E-value=43 Score=23.47 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHhhccc
Q 046105 3 KLALLLATFTLLFLIASASI 22 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~Asa 22 (138)
||++.++++++++++....+
T Consensus 7 KL~~~f~~~~~l~~~~~~~~ 26 (181)
T PF12729_consen 7 KLILGFGLIILLLLIVGIVG 26 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665544444
No 37
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=30.61 E-value=22 Score=20.33 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=8.4
Q ss_pred ChhHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLL 14 (138)
Q Consensus 1 MaKl~~~~Alla~l 14 (138)
|-||++++.+..++
T Consensus 1 MKkl~i~L~l~ga~ 14 (33)
T PF10855_consen 1 MKKLAIILILGGAA 14 (33)
T ss_pred CCceeehhhhhhHH
Confidence 66777665554443
No 38
>PRK15240 resistance to complement killing; Provisional
Probab=30.51 E-value=46 Score=25.72 Aligned_cols=17 Identities=24% Similarity=0.127 Sum_probs=9.7
Q ss_pred ChhHHHHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLLFLI 17 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~ 17 (138)
|-|.++++++++++++.
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 66777666555444433
No 39
>PF10956 DUF2756: Protein of unknown function (DUF2756); InterPro: IPR020158 This entry contains proteins with no known function.
Probab=29.65 E-value=44 Score=23.89 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLL 14 (138)
Q Consensus 1 MaKl~~~~Alla~l 14 (138)
|-||++++|+|-+.
T Consensus 1 MK~ll~laalLPl~ 14 (104)
T PF10956_consen 1 MKRLLILAALLPLA 14 (104)
T ss_pred ChHHHHHHHHccHH
Confidence 56677766665544
No 40
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.20 E-value=20 Score=27.16 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 046105 4 LALLLATFTLLFLIASASI 22 (138)
Q Consensus 4 l~~~~Alla~ll~~a~Asa 22 (138)
+++++++++++|+++.+.+
T Consensus 25 ~liii~~~~lll~~~g~g~ 43 (166)
T PRK12785 25 KLIIIAAAAVLLLGGGGGG 43 (166)
T ss_pred eEeeHHHHHHHHHhcchhe
Confidence 3333333333333333333
No 41
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.54 E-value=40 Score=27.85 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 046105 3 KLALLLATFTLLFLIASA 20 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~A 20 (138)
|-.+|+|||++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (311)
T PRK09545 4 KTLLFAALLAALLGGATQ 21 (311)
T ss_pred hHHHHHHHHHhhcccccc
Confidence 556788888888765443
No 42
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=27.85 E-value=61 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHHHHhh
Q 046105 1 MAKLALLLATFTLLFLIAS 19 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~ 19 (138)
||+-+.++.|||+-|-+|-
T Consensus 1 MaRRlwiLslLAVtLtVAL 19 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVAL 19 (100)
T ss_pred CchhhHHHHHHHHHHHHHh
Confidence 8865666667776654433
No 43
>PRK10002 outer membrane protein F; Provisional
Probab=27.41 E-value=46 Score=27.91 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=7.2
Q ss_pred ChhHHHHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLLFLI 17 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~ 17 (138)
|+|=+++++++++++++
T Consensus 1 ~mkktl~a~a~~a~~~a 17 (362)
T PRK10002 1 MMKRNILAVIVPALLVA 17 (362)
T ss_pred CccHhHHHHHHHHHHHh
Confidence 56544443333433333
No 44
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=27.24 E-value=62 Score=24.54 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHHH
Q 046105 1 MAKLALLLATFTLLFL 16 (138)
Q Consensus 1 MaKl~~~~Alla~ll~ 16 (138)
|||.+.+.+++|++|+
T Consensus 1 ~~~m~vl~~ll~~vl~ 16 (154)
T KOG3384|consen 1 MAKMVVLSLLLALVLA 16 (154)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8998888777766643
No 45
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=26.99 E-value=47 Score=24.35 Aligned_cols=20 Identities=40% Similarity=0.363 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHHHhhc
Q 046105 1 MAKLALLLATFTLLFLIASA 20 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~A 20 (138)
|.|+++.+++|+++..++.+
T Consensus 1 m~k~~~~l~~L~~~~~~a~a 20 (121)
T COG2863 1 MKKILLALLVLALAAAIAWA 20 (121)
T ss_pred ChhHHHHHHHHHHhccchhh
Confidence 77888777766666533333
No 46
>PRK15396 murein lipoprotein; Provisional
Probab=26.19 E-value=73 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 046105 3 KLALLLATFTLLFLIASAS 21 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~As 21 (138)
||++.++.++++||...|+
T Consensus 5 kl~l~av~ls~~LLaGCAs 23 (78)
T PRK15396 5 KLVLGAVILGSTLLAGCSS 23 (78)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4555555555555555554
No 47
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=25.76 E-value=23 Score=24.97 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 046105 3 KLALLLATFTLLFLI 17 (138)
Q Consensus 3 Kl~~~~Alla~ll~~ 17 (138)
|.+|++|++.|++++
T Consensus 2 KatIlLAv~vAViv~ 16 (98)
T PF10690_consen 2 KATILLAVVVAVIVG 16 (98)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 677777665444433
No 48
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.76 E-value=65 Score=21.87 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 046105 3 KLALLLATFTLLFLIASAS 21 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~As 21 (138)
|+++.+++++.+||+..++
T Consensus 5 ~m~l~Avvlg~lllAGc~s 23 (78)
T COG4238 5 KMTLGAVVLGSLLLAGCSS 23 (78)
T ss_pred hhhHHHHHHHHHHHHhcch
Confidence 6888888888877655443
No 49
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.37 E-value=22 Score=26.95 Aligned_cols=6 Identities=0% Similarity=0.396 Sum_probs=2.2
Q ss_pred HHHHHH
Q 046105 5 ALLLAT 10 (138)
Q Consensus 5 ~~~~Al 10 (138)
++++++
T Consensus 21 iiii~~ 26 (170)
T PRK05696 21 IIIIVI 26 (170)
T ss_pred EeeHHH
Confidence 333333
No 50
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=25.35 E-value=77 Score=22.35 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHHHHHHHhhcc
Q 046105 1 MAKLALLLATFTLLFLIASAS 21 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~As 21 (138)
|=|+.+.+.+++++|+...||
T Consensus 1 M~k~l~sal~~~~~L~~GCAs 21 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCAS 21 (96)
T ss_pred CchHHHHHHHHHHHHHhHccC
Confidence 567775555555444444443
No 51
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=25.12 E-value=47 Score=24.45 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=9.5
Q ss_pred HHHHHHHHhccccCC
Q 046105 108 QEMFETASEIPRMCQ 122 (138)
Q Consensus 108 ~~~~~~A~~LP~~Cn 122 (138)
+.++..|..-+..|.
T Consensus 128 ~~~ls~a~~~~~tC~ 142 (178)
T TIGR01614 128 ETWLSSALTDPSTCE 142 (178)
T ss_pred HHHHHHHHcccchHH
Confidence 556666666666664
No 52
>PRK15239 putative fimbrial protein StaA; Provisional
Probab=24.75 E-value=82 Score=24.36 Aligned_cols=9 Identities=44% Similarity=0.431 Sum_probs=4.1
Q ss_pred ChhHHHHHH
Q 046105 1 MAKLALLLA 9 (138)
Q Consensus 1 MaKl~~~~A 9 (138)
|-|.++..+
T Consensus 1 mk~~~l~~~ 9 (197)
T PRK15239 1 MKKVLLATA 9 (197)
T ss_pred CcHHHHHHH
Confidence 555544433
No 53
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.74 E-value=60 Score=20.96 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHH
Q 046105 1 MAKLALLLATFTL 13 (138)
Q Consensus 1 MaKl~~~~Alla~ 13 (138)
|+|+++++.++++
T Consensus 9 mtriVLLISfiIl 21 (59)
T PF11119_consen 9 MTRIVLLISFIIL 21 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 7787666554433
No 54
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.56 E-value=76 Score=22.36 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=5.1
Q ss_pred ChhHHHHH
Q 046105 1 MAKLALLL 8 (138)
Q Consensus 1 MaKl~~~~ 8 (138)
|-|+++++
T Consensus 1 MKk~~ll~ 8 (114)
T PF11777_consen 1 MKKIILLA 8 (114)
T ss_pred CchHHHHH
Confidence 66766665
No 55
>PRK11566 hdeB acid-resistance protein; Provisional
Probab=24.49 E-value=62 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHH
Q 046105 3 KLALLLATFTLLFLI 17 (138)
Q Consensus 3 Kl~~~~Alla~ll~~ 17 (138)
|.+++++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (102)
T PRK11566 2 KAFIFMAAVTALSLV 16 (102)
T ss_pred chhHHHHHHHHHHHH
Confidence 455665555555444
No 56
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=24.19 E-value=25 Score=22.50 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=0.0
Q ss_pred hhHHHHHH
Q 046105 2 AKLALLLA 9 (138)
Q Consensus 2 aKl~~~~A 9 (138)
.||.+++.
T Consensus 1 mKLt~vli 8 (75)
T PF02950_consen 1 MKLTCVLI 8 (75)
T ss_dssp --------
T ss_pred CCcchHHH
Confidence 37776643
No 57
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=24.19 E-value=92 Score=23.47 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=3.7
Q ss_pred ChhHHHHHH
Q 046105 1 MAKLALLLA 9 (138)
Q Consensus 1 MaKl~~~~A 9 (138)
|-|.++.++
T Consensus 1 mk~~~~~~~ 9 (185)
T PRK15194 1 MKLRFISSA 9 (185)
T ss_pred CchHHHHHH
Confidence 544444333
No 58
>PLN00115 pollen allergen group 3; Provisional
Probab=23.73 E-value=1.2e+02 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=8.7
Q ss_pred Chh--HHHHHHHHHHHHHHh
Q 046105 1 MAK--LALLLATFTLLFLIA 18 (138)
Q Consensus 1 MaK--l~~~~Alla~ll~~a 18 (138)
|+. .++.+|+||+|++++
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~ 20 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVG 20 (118)
T ss_pred CchhHHHHHHHHHHHHhhhh
Confidence 563 334445556654443
No 59
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=22.24 E-value=33 Score=24.71 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=1.9
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 046105 3 KLALLLATFTLLFLIASAS 21 (138)
Q Consensus 3 Kl~~~~Alla~ll~~a~As 21 (138)
||++++++|+++++++++.
T Consensus 10 ~L~~~l~~~~~ll~~~~~~ 28 (171)
T PF02203_consen 10 KLLLVLALFLLLLLVVGGL 28 (171)
T ss_dssp ---------------HHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777776655443
No 60
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=22.12 E-value=95 Score=23.84 Aligned_cols=30 Identities=37% Similarity=0.348 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcccccceeeecC
Q 046105 1 MAKLALLLATFTLLFLIASASIYRTTVEVDE 31 (138)
Q Consensus 1 MaKl~~~~Alla~ll~~a~Asa~r~~~~~~~ 31 (138)
||-...++. ++++|.++++..--++++||.
T Consensus 1 ~~~~~~~~l-~~~~l~~~~s~~e~~t~eFdv 30 (158)
T PF10572_consen 1 MAAWAALLL-AAVLLLVVHSVSEPTTKEFDV 30 (158)
T ss_pred ChhHHHHHH-HHHHHhhccccccccceeEEe
Confidence 564333332 233333444444344555663
No 61
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=21.72 E-value=74 Score=24.14 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 046105 3 KLALLLATFTLLFL 16 (138)
Q Consensus 3 Kl~~~~Alla~ll~ 16 (138)
||++-++++++||+
T Consensus 3 ~~~~~~~~~~~ll~ 16 (180)
T PRK10894 3 KLSLNLLLASSLLA 16 (180)
T ss_pred chHHHHHHHHHHHH
Confidence 55544444444443
No 62
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=20.63 E-value=1e+02 Score=19.38 Aligned_cols=9 Identities=67% Similarity=0.719 Sum_probs=4.4
Q ss_pred ChhHHHHHH
Q 046105 1 MAKLALLLA 9 (138)
Q Consensus 1 MaKl~~~~A 9 (138)
|=.|++++|
T Consensus 1 MRTL~LLaA 9 (52)
T PF00879_consen 1 MRTLALLAA 9 (52)
T ss_pred CcHHHHHHH
Confidence 344555544
No 63
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=20.62 E-value=1.1e+02 Score=25.17 Aligned_cols=12 Identities=42% Similarity=0.304 Sum_probs=5.7
Q ss_pred ChhHHHHHHHHH
Q 046105 1 MAKLALLLATFT 12 (138)
Q Consensus 1 MaKl~~~~Alla 12 (138)
|.|+++++++++
T Consensus 5 ~kk~~~~~~~~~ 16 (298)
T PRK04405 5 MKKWALAAASAG 16 (298)
T ss_pred HHHHHHHHHHHH
Confidence 335555544444
No 64
>PRK15289 lpfA fimbrial protein; Provisional
Probab=20.55 E-value=1.2e+02 Score=22.94 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=2.8
Q ss_pred ChhHHH
Q 046105 1 MAKLAL 6 (138)
Q Consensus 1 MaKl~~ 6 (138)
|-|.++
T Consensus 1 mk~~~~ 6 (190)
T PRK15289 1 MKRNII 6 (190)
T ss_pred CcHHHH
Confidence 455444
No 65
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.49 E-value=1.2e+02 Score=18.79 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=5.5
Q ss_pred cccccceee
Q 046105 20 ASIYRTTVE 28 (138)
Q Consensus 20 Asa~r~~~~ 28 (138)
|..||-|+.
T Consensus 26 ~ygYkht~d 34 (50)
T PF12606_consen 26 AYGYKHTVD 34 (50)
T ss_pred ccccccccC
Confidence 446886653
No 66
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.01 E-value=1.2e+02 Score=20.93 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=10.0
Q ss_pred Chh-HHHHHHHHHHHHHHhhcc
Q 046105 1 MAK-LALLLATFTLLFLIASAS 21 (138)
Q Consensus 1 MaK-l~~~~Alla~ll~~a~As 21 (138)
|-| |++.++.++++||..-|+
T Consensus 1 mk~klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCC
Confidence 444 444444444544555444
Done!