BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046107
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
++ G +Y T ST + + + + G+L++YDPS+K+ +++L+ L+ G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
+S FV+V E + +K+WL+ K E+ ++ +P P NI DG FW+S
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
++ G +Y T ST + + + + G+L++YDPS+K+ +++L+ L+ G
Sbjct: 123 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 182
Query: 76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
+S FV+V E + +K+WL+ K E+ ++ +P P NI DG FW+S
Sbjct: 183 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
++ G +Y T ST + + + G+L +YDPS+K+ +++ + L+ G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
+S FV+V E + +K+WL+ K E+ ++ +P P NI DG FW+S
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 57 SSKQVSIVLEGLYFANGVALSKHGDFVVVCE 87
S V +V EG FANG+ +S G +V + E
Sbjct: 209 SPNDVRVVAEGFDFANGINISPDGKYVYIAE 239
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLGDKR-DREIFIENLPGGPDNINLAPDG---SFWISLIKMNSSAVETVHSSKNRKQL 152
W+ LG + D F++ PGGP + LA G FW A+ VH+ + ++L
Sbjct: 23 WVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFW---------ALYAVHNQSHVREL 73
Query: 153 LEEH 156
L ++
Sbjct: 74 LAQY 77
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 95 KHWLKLGDKRDREIFIENL----PGGP 117
K WL+ G+ R+RE+F++ + P GP
Sbjct: 265 KEWLRSGNSREREMFVQEVRRYYPFGP 291
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 97 WLKLG-DKRDREIFIENLPGGPDNINLAPDGS---FWISLIKMNSSAVETVHSSKNRKQL 152
W+ G D D F+E PGGPD I LA G+ FW A+ VH + +L
Sbjct: 23 WVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---------ALYAVHGEPHVLEL 73
Query: 153 LEEH 156
L+++
Sbjct: 74 LQQY 77
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVET 142
VV ++W+ +L D+ E+F P D I LA +G + ++ V+T
Sbjct: 133 VVCSDTWRPGAYHQLRQLLDRYHIEVF--GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDT 190
Query: 143 VHSSKNRKQLLEEHPELIN 161
K K L+EE ++ N
Sbjct: 191 AGRHKEDKALIEEMKQISN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,417,920
Number of Sequences: 62578
Number of extensions: 251926
Number of successful extensions: 642
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 13
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)