Query 046107
Match_columns 224
No_of_seqs 127 out of 1595
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 2.1E-36 4.5E-41 250.7 18.4 222 3-224 153-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 3.1E-25 6.8E-30 180.4 17.8 155 9-213 84-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 7.6E-25 1.7E-29 182.2 20.0 170 3-217 103-279 (307)
4 PF03088 Str_synth: Strictosid 99.9 3.5E-21 7.6E-26 130.8 9.4 87 14-100 1-88 (89)
5 KOG4499 Ca2+-binding protein R 99.7 1.1E-15 2.4E-20 119.5 16.2 155 11-214 109-275 (310)
6 COG4257 Vgb Streptogramin lyas 99.7 1.4E-15 3E-20 121.5 13.8 154 10-222 61-216 (353)
7 PLN02919 haloacid dehalogenase 99.6 3E-14 6.6E-19 136.2 22.0 159 9-223 681-887 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.6 3.4E-13 7.3E-18 109.6 19.5 154 12-223 1-163 (246)
9 COG4257 Vgb Streptogramin lyas 99.5 2.3E-13 5E-18 108.9 13.7 153 11-222 148-303 (353)
10 PLN02919 haloacid dehalogenase 99.5 6.9E-12 1.5E-16 120.2 21.3 160 8-223 565-769 (1057)
11 TIGR02604 Piru_Ver_Nterm putat 99.4 2.1E-11 4.4E-16 104.9 19.4 189 2-221 4-210 (367)
12 PF01731 Arylesterase: Arylest 99.2 9.4E-11 2E-15 79.2 9.7 82 14-99 1-84 (86)
13 COG3386 Gluconolactonase [Carb 99.2 7.3E-10 1.6E-14 92.6 16.6 166 8-223 22-192 (307)
14 PF10282 Lactonase: Lactonase, 99.2 1.1E-09 2.4E-14 93.5 17.9 161 9-223 142-321 (345)
15 PRK11028 6-phosphogluconolacto 99.1 4.6E-09 1E-13 88.8 17.8 161 11-223 126-303 (330)
16 PF10282 Lactonase: Lactonase, 99.1 8.3E-09 1.8E-13 88.1 19.1 163 11-223 87-274 (345)
17 TIGR03606 non_repeat_PQQ dehyd 99.1 1.4E-08 3.1E-13 88.7 19.4 110 9-135 28-166 (454)
18 COG3391 Uncharacterized conser 99.1 1.8E-08 3.9E-13 87.1 19.3 162 12-223 117-282 (381)
19 PF07995 GSDH: Glucose / Sorbo 99.0 7.8E-09 1.7E-13 87.8 14.6 161 10-216 1-203 (331)
20 TIGR02604 Piru_Ver_Nterm putat 99.0 2E-08 4.3E-13 86.5 16.1 102 9-135 70-204 (367)
21 COG3391 Uncharacterized conser 99.0 6E-08 1.3E-12 83.9 18.3 156 10-223 73-238 (381)
22 TIGR02658 TTQ_MADH_Hv methylam 99.0 9.3E-08 2E-12 81.2 17.7 145 22-217 13-179 (352)
23 PRK11028 6-phosphogluconolacto 98.9 9.8E-08 2.1E-12 80.7 17.3 137 49-223 12-155 (330)
24 PF03022 MRJP: Major royal jel 98.9 2.3E-07 4.9E-12 77.2 17.5 149 9-213 59-254 (287)
25 COG2706 3-carboxymuconate cycl 98.9 2.7E-07 5.8E-12 76.7 16.8 111 9-136 189-312 (346)
26 PF05096 Glu_cyclase_2: Glutam 98.9 1.3E-06 2.9E-11 70.8 20.2 163 2-223 36-202 (264)
27 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 3.6E-06 7.7E-11 69.1 20.2 103 12-135 32-135 (300)
28 KOG1520 Predicted alkaloid syn 98.7 1.5E-07 3.3E-12 79.2 11.2 140 5-183 113-278 (376)
29 KOG1214 Nidogen and related ba 98.7 3.6E-07 7.7E-12 83.0 13.8 161 3-223 1060-1225(1289)
30 PF02239 Cytochrom_D1: Cytochr 98.7 1.7E-06 3.8E-11 74.5 16.1 153 13-223 39-201 (369)
31 KOG4659 Uncharacterized conser 98.6 1.7E-06 3.8E-11 81.8 16.5 156 7-223 361-560 (1899)
32 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 1.2E-05 2.5E-10 66.1 19.7 152 13-223 117-278 (300)
33 COG2706 3-carboxymuconate cycl 98.6 1.4E-05 3E-10 66.6 18.0 119 71-223 147-273 (346)
34 KOG1214 Nidogen and related ba 98.4 3.4E-06 7.4E-11 76.9 12.3 111 6-136 1020-1133(1289)
35 PF02239 Cytochrom_D1: Cytochr 98.4 1.9E-05 4E-10 68.1 16.3 136 47-223 14-157 (369)
36 PF06977 SdiA-regulated: SdiA- 98.4 7E-05 1.5E-09 60.9 17.8 159 10-222 64-248 (248)
37 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0001 2.2E-09 62.9 18.8 81 11-100 47-137 (352)
38 KOG4659 Uncharacterized conser 98.3 2.7E-05 5.9E-10 74.0 15.0 114 6-135 470-613 (1899)
39 PF01436 NHL: NHL repeat; Int 98.2 3.2E-06 7E-11 44.7 3.9 28 68-96 1-28 (28)
40 PF07995 GSDH: Glucose / Sorbo 98.2 9.5E-05 2.1E-09 62.9 14.7 85 10-98 113-213 (331)
41 PRK04792 tolB translocation pr 98.2 0.00038 8.2E-09 61.6 19.0 78 48-129 241-320 (448)
42 PRK05137 tolB translocation pr 98.2 0.00043 9.4E-09 61.0 19.3 76 48-127 225-302 (435)
43 PF05096 Glu_cyclase_2: Glutam 98.1 0.00019 4E-09 58.5 14.6 138 47-224 108-261 (264)
44 PRK03629 tolB translocation pr 98.1 0.00092 2E-08 58.9 19.7 78 48-129 222-301 (429)
45 TIGR03032 conserved hypothetic 98.1 6.2E-05 1.3E-09 62.4 11.1 108 12-134 153-260 (335)
46 cd00200 WD40 WD40 domain, foun 98.1 0.0014 3.1E-08 52.0 19.0 160 2-223 2-164 (289)
47 PRK02889 tolB translocation pr 98.0 0.0013 2.9E-08 57.8 19.8 76 48-127 219-296 (427)
48 PRK05137 tolB translocation pr 98.0 0.0011 2.4E-08 58.4 19.0 79 48-130 269-349 (435)
49 PRK00178 tolB translocation pr 98.0 0.0017 3.8E-08 56.9 19.7 80 48-131 222-304 (430)
50 PRK04792 tolB translocation pr 98.0 0.0017 3.7E-08 57.5 19.1 79 48-130 285-365 (448)
51 PRK04922 tolB translocation pr 98.0 0.0014 3.1E-08 57.6 18.6 79 48-130 227-307 (433)
52 cd00200 WD40 WD40 domain, foun 97.9 0.0014 3E-08 52.1 16.9 130 48-221 156-288 (289)
53 PRK04043 tolB translocation pr 97.9 0.0021 4.6E-08 56.4 18.9 81 48-132 212-295 (419)
54 PRK03629 tolB translocation pr 97.9 0.0026 5.7E-08 56.0 19.5 79 49-131 267-347 (429)
55 PF03022 MRJP: Major royal jel 97.9 0.00085 1.8E-08 55.9 15.5 84 12-100 2-97 (287)
56 PF13449 Phytase-like: Esteras 97.9 0.0019 4.1E-08 54.8 17.9 123 70-214 86-234 (326)
57 PRK01742 tolB translocation pr 97.9 0.0019 4.1E-08 56.8 18.0 76 48-127 227-304 (429)
58 PF03088 Str_synth: Strictosid 97.9 0.00013 2.9E-09 49.6 8.1 83 118-223 1-86 (89)
59 TIGR02800 propeller_TolB tol-p 97.9 0.0036 7.9E-08 54.4 19.3 77 49-129 214-292 (417)
60 PF06433 Me-amine-dh_H: Methyl 97.8 0.0016 3.5E-08 54.9 15.6 100 22-136 3-117 (342)
61 PRK02888 nitrous-oxide reducta 97.8 0.0011 2.4E-08 60.1 15.6 149 47-223 213-403 (635)
62 COG2133 Glucose/sorbosone dehy 97.8 0.0033 7.1E-08 54.4 17.3 171 10-223 176-396 (399)
63 KOG0291 WD40-repeat-containing 97.7 0.0039 8.4E-08 57.0 17.1 152 10-220 350-504 (893)
64 PRK04922 tolB translocation pr 97.7 0.0031 6.7E-08 55.5 16.6 105 49-192 316-423 (433)
65 PF06977 SdiA-regulated: SdiA- 97.7 0.0068 1.5E-07 49.4 16.9 158 12-223 23-200 (248)
66 PF07433 DUF1513: Protein of u 97.7 0.0036 7.7E-08 52.2 15.3 161 13-212 7-180 (305)
67 smart00135 LY Low-density lipo 97.7 0.00021 4.6E-09 41.2 5.9 37 64-100 4-40 (43)
68 PRK02889 tolB translocation pr 97.7 0.0051 1.1E-07 54.1 17.1 107 49-193 308-416 (427)
69 TIGR03606 non_repeat_PQQ dehyd 97.6 0.0015 3.2E-08 57.6 13.3 74 60-134 21-105 (454)
70 PF07433 DUF1513: Protein of u 97.6 0.0074 1.6E-07 50.3 16.7 106 16-135 56-183 (305)
71 COG2133 Glucose/sorbosone dehy 97.6 0.0015 3.2E-08 56.5 13.0 118 10-136 66-198 (399)
72 PRK01029 tolB translocation pr 97.6 0.012 2.6E-07 51.8 18.8 80 48-127 210-293 (428)
73 PF05787 DUF839: Bacterial pro 97.6 0.0012 2.5E-08 59.5 12.2 124 8-132 347-520 (524)
74 PRK00178 tolB translocation pr 97.6 0.0064 1.4E-07 53.4 16.6 107 48-192 310-418 (430)
75 TIGR02800 propeller_TolB tol-p 97.6 0.013 2.7E-07 51.0 18.3 82 48-133 257-340 (417)
76 PRK02888 nitrous-oxide reducta 97.6 0.001 2.2E-08 60.3 11.4 88 49-136 296-396 (635)
77 PF13360 PQQ_2: PQQ-like domai 97.6 0.019 4.2E-07 45.7 18.1 64 17-100 32-95 (238)
78 KOG0279 G protein beta subunit 97.6 0.016 3.6E-07 47.2 17.0 110 70-223 150-261 (315)
79 PRK04043 tolB translocation pr 97.6 0.0062 1.3E-07 53.5 15.9 122 16-193 282-413 (419)
80 PRK01742 tolB translocation pr 97.5 0.011 2.5E-07 51.9 17.1 78 49-130 184-263 (429)
81 COG3211 PhoX Predicted phospha 97.5 0.0011 2.5E-08 58.8 10.4 69 68-136 416-521 (616)
82 PF05787 DUF839: Bacterial pro 97.5 0.0013 2.9E-08 59.2 11.2 70 66-135 347-456 (524)
83 KOG0266 WD40 repeat-containing 97.5 0.014 3.1E-07 51.8 17.6 114 67-223 202-317 (456)
84 PRK01029 tolB translocation pr 97.5 0.015 3.3E-07 51.2 17.5 96 15-129 285-385 (428)
85 KOG0266 WD40 repeat-containing 97.5 0.017 3.7E-07 51.3 17.7 106 9-135 202-309 (456)
86 COG3204 Uncharacterized protei 97.5 0.016 3.5E-07 47.8 15.9 150 10-214 128-303 (316)
87 PRK11138 outer membrane biogen 97.5 0.021 4.5E-07 49.6 18.0 127 48-224 265-394 (394)
88 PF01436 NHL: NHL repeat; Int 97.4 0.00034 7.3E-09 36.9 4.1 21 10-30 1-21 (28)
89 COG3211 PhoX Predicted phospha 97.4 0.0021 4.5E-08 57.2 11.0 128 6-135 412-575 (616)
90 PTZ00421 coronin; Provisional 97.4 0.036 7.8E-07 49.7 19.0 64 69-135 126-189 (493)
91 KOG0289 mRNA splicing factor [ 97.4 0.014 3E-07 50.3 14.9 148 14-221 351-502 (506)
92 PTZ00420 coronin; Provisional 97.4 0.057 1.2E-06 49.2 19.9 63 69-135 126-188 (568)
93 KOG4499 Ca2+-binding protein R 97.3 0.0027 5.8E-08 50.7 9.5 115 10-135 157-276 (310)
94 KOG0291 WD40-repeat-containing 97.3 0.035 7.6E-07 51.0 17.4 112 4-135 429-542 (893)
95 PF13360 PQQ_2: PQQ-like domai 97.3 0.051 1.1E-06 43.2 17.2 132 48-223 2-139 (238)
96 COG3823 Glutamine cyclotransfe 97.2 0.017 3.6E-07 45.5 12.9 162 2-223 37-203 (262)
97 KOG1446 Histone H3 (Lys4) meth 97.2 0.088 1.9E-06 43.6 17.7 154 13-223 103-261 (311)
98 PF08662 eIF2A: Eukaryotic tra 97.2 0.048 1E-06 42.7 15.7 82 48-135 38-121 (194)
99 COG3490 Uncharacterized protei 97.2 0.0095 2.1E-07 49.0 11.4 142 50-212 92-243 (366)
100 COG4946 Uncharacterized protei 97.0 0.046 1E-06 47.9 15.0 84 48-135 380-464 (668)
101 PRK13616 lipoprotein LpqB; Pro 97.0 0.037 8E-07 50.8 15.0 128 47-215 428-560 (591)
102 KOG0263 Transcription initiati 97.0 0.02 4.3E-07 52.4 12.8 131 47-223 515-648 (707)
103 COG3823 Glutamine cyclotransfe 97.0 0.0038 8.2E-08 49.0 7.0 66 4-87 169-247 (262)
104 PF13449 Phytase-like: Esteras 96.9 0.019 4.1E-07 48.7 11.9 112 12-135 86-235 (326)
105 TIGR03300 assembly_YfgL outer 96.9 0.076 1.6E-06 45.7 15.8 120 47-215 249-371 (377)
106 KOG0318 WD40 repeat stress pro 96.9 0.14 3.1E-06 45.3 17.0 67 67-135 442-508 (603)
107 PF02333 Phytase: Phytase; In 96.9 0.066 1.4E-06 46.2 14.9 134 50-223 130-289 (381)
108 PF14269 Arylsulfotran_2: Aryl 96.9 0.073 1.6E-06 44.6 14.8 125 11-188 144-297 (299)
109 TIGR03118 PEPCTERM_chp_1 conse 96.9 0.17 3.6E-06 42.2 16.2 126 72-223 141-278 (336)
110 TIGR03032 conserved hypothetic 96.9 0.0045 9.8E-08 51.5 7.2 60 10-89 202-261 (335)
111 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.058 1.3E-06 44.9 13.3 67 65-132 19-94 (336)
112 PF06433 Me-amine-dh_H: Methyl 96.8 0.047 1E-06 46.2 13.0 79 14-100 39-127 (342)
113 PTZ00420 coronin; Provisional 96.8 0.3 6.4E-06 44.7 18.9 53 47-100 146-198 (568)
114 KOG2110 Uncharacterized conser 96.7 0.21 4.6E-06 42.3 16.1 132 49-223 106-247 (391)
115 PF00058 Ldl_recept_b: Low-den 96.7 0.0062 1.3E-07 35.3 5.2 40 82-124 2-42 (42)
116 PF08662 eIF2A: Eukaryotic tra 96.6 0.075 1.6E-06 41.6 12.5 99 13-134 62-163 (194)
117 COG1520 FOG: WD40-like repeat 96.6 0.16 3.4E-06 43.8 15.4 124 47-214 76-206 (370)
118 COG3292 Predicted periplasmic 96.6 0.027 5.8E-07 50.4 10.3 96 15-135 169-267 (671)
119 PF14583 Pectate_lyase22: Olig 96.5 0.13 2.7E-06 44.4 13.7 125 47-189 58-186 (386)
120 TIGR02276 beta_rpt_yvtn 40-res 96.5 0.016 3.5E-07 33.0 5.9 42 78-123 1-42 (42)
121 TIGR03300 assembly_YfgL outer 96.4 0.28 6.1E-06 42.1 15.9 50 48-100 74-124 (377)
122 KOG0315 G-protein beta subunit 96.4 0.4 8.6E-06 38.9 15.4 105 12-135 126-236 (311)
123 KOG0318 WD40 repeat stress pro 96.4 0.5 1.1E-05 42.0 16.7 72 11-100 191-266 (603)
124 KOG1446 Histone H3 (Lys4) meth 96.3 0.33 7.2E-06 40.3 14.6 64 68-135 187-253 (311)
125 PRK11138 outer membrane biogen 96.3 0.36 7.8E-06 41.9 15.9 128 48-221 78-220 (394)
126 KOG0282 mRNA splicing factor [ 96.3 0.065 1.4E-06 46.8 10.8 62 73-135 390-453 (503)
127 COG3490 Uncharacterized protei 96.2 0.16 3.6E-06 41.9 12.3 171 47-219 138-343 (366)
128 KOG0272 U4/U6 small nuclear ri 96.2 0.21 4.4E-06 43.1 13.2 103 10-135 303-409 (459)
129 COG0823 TolB Periplasmic compo 96.2 0.13 2.8E-06 45.3 12.4 82 49-135 218-304 (425)
130 KOG2919 Guanine nucleotide-bin 96.2 0.18 3.8E-06 42.3 12.2 116 66-223 156-280 (406)
131 KOG0293 WD40 repeat-containing 96.1 0.22 4.7E-06 43.0 12.9 108 19-135 222-333 (519)
132 KOG2139 WD40 repeat protein [G 96.0 0.18 3.9E-06 42.8 11.9 98 11-129 196-295 (445)
133 KOG0282 mRNA splicing factor [ 96.0 0.08 1.7E-06 46.2 10.1 135 47-223 278-414 (503)
134 KOG2055 WD40 repeat protein [G 96.0 0.75 1.6E-05 40.3 15.7 86 48-133 236-322 (514)
135 PF00058 Ldl_recept_b: Low-den 96.0 0.042 9.1E-07 31.7 5.8 41 22-78 1-42 (42)
136 PTZ00421 coronin; Provisional 95.9 1.3 2.7E-05 40.0 20.5 84 47-133 146-230 (493)
137 KOG0286 G-protein beta subunit 95.8 0.91 2E-05 37.6 15.3 85 48-135 208-294 (343)
138 KOG1538 Uncharacterized conser 95.7 0.22 4.8E-06 45.6 11.5 77 2-98 4-82 (1081)
139 KOG2055 WD40 repeat protein [G 95.6 0.17 3.6E-06 44.2 10.3 84 48-135 324-407 (514)
140 KOG0640 mRNA cleavage stimulat 95.6 0.14 2.9E-06 42.8 9.2 101 12-135 174-282 (430)
141 cd00216 PQQ_DH Dehydrogenases 95.4 0.93 2E-05 40.7 15.1 122 46-215 308-458 (488)
142 cd00216 PQQ_DH Dehydrogenases 95.4 1.2 2.7E-05 39.9 15.7 51 48-100 70-129 (488)
143 KOG0271 Notchless-like WD40 re 95.3 0.81 1.8E-05 39.3 13.3 31 68-99 157-187 (480)
144 KOG0772 Uncharacterized conser 95.3 0.44 9.5E-06 42.3 11.9 65 70-135 270-338 (641)
145 COG3204 Uncharacterized protei 95.3 1.4 3.1E-05 36.6 16.3 105 13-135 88-202 (316)
146 PLN00181 protein SPA1-RELATED; 95.1 3.2 6.9E-05 39.6 19.2 103 13-135 486-597 (793)
147 PRK13616 lipoprotein LpqB; Pro 95.1 2.3 5E-05 39.2 16.8 100 10-127 349-460 (591)
148 KOG4378 Nuclear protein COP1 [ 95.1 0.38 8.2E-06 42.6 10.9 64 67-135 206-271 (673)
149 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.13 2.9E-06 29.0 5.9 39 22-77 4-42 (42)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 1.1 2.3E-05 40.8 14.2 41 172-214 482-523 (527)
151 COG4247 Phy 3-phytase (myo-ino 94.9 1.4 3.1E-05 36.0 13.0 83 50-135 127-226 (364)
152 KOG1274 WD40 repeat protein [G 94.9 2.7 6E-05 39.8 16.5 49 51-100 120-169 (933)
153 KOG1215 Low-density lipoprotei 94.8 1.3 2.8E-05 42.8 15.0 157 7-220 476-635 (877)
154 PRK13684 Ycf48-like protein; P 94.8 2.3 4.9E-05 36.3 15.9 84 48-135 192-280 (334)
155 KOG0272 U4/U6 small nuclear ri 94.8 0.37 8E-06 41.6 9.8 65 68-136 303-367 (459)
156 PF05694 SBP56: 56kDa selenium 94.6 0.17 3.6E-06 44.3 7.6 64 71-134 314-394 (461)
157 KOG3881 Uncharacterized conser 94.6 0.33 7.2E-06 41.5 9.1 86 46-135 223-311 (412)
158 COG1520 FOG: WD40-like repeat 94.6 2.3 5E-05 36.5 14.8 68 12-100 102-172 (370)
159 PF14517 Tachylectin: Tachylec 94.5 1.1 2.3E-05 36.1 11.4 104 12-135 82-198 (229)
160 PHA02713 hypothetical protein; 94.5 2.5 5.5E-05 38.6 15.5 126 49-214 367-521 (557)
161 PLN00033 photosystem II stabil 94.5 3.1 6.8E-05 36.4 16.5 132 48-221 258-396 (398)
162 KOG1273 WD40 repeat protein [G 94.3 2.9 6.2E-05 35.2 14.4 53 46-99 42-95 (405)
163 KOG0263 Transcription initiati 94.2 0.54 1.2E-05 43.4 10.2 84 50-137 558-642 (707)
164 KOG0293 WD40 repeat-containing 94.2 1.5 3.3E-05 38.0 12.2 81 50-134 292-374 (519)
165 PLN00181 protein SPA1-RELATED; 94.2 5.3 0.00012 38.1 19.4 86 46-135 595-681 (793)
166 KOG0319 WD40-repeat-containing 94.2 2.7 5.8E-05 39.0 14.4 146 16-223 25-178 (775)
167 KOG2139 WD40 repeat protein [G 94.2 1.5 3.2E-05 37.5 11.9 61 72-135 199-259 (445)
168 smart00135 LY Low-density lipo 94.1 0.18 3.9E-06 28.4 4.9 33 8-57 6-39 (43)
169 KOG0278 Serine/threonine kinas 94.1 2.7 5.9E-05 34.3 14.5 61 69-135 185-245 (334)
170 COG0823 TolB Periplasmic compo 94.0 1.3 2.9E-05 39.0 12.0 82 47-132 304-387 (425)
171 KOG0294 WD40 repeat-containing 93.9 3.3 7.2E-05 34.8 15.2 97 13-133 130-227 (362)
172 KOG2110 Uncharacterized conser 93.9 2.5 5.3E-05 36.1 12.7 83 47-136 151-240 (391)
173 PF02897 Peptidase_S9_N: Proly 93.9 4.1 8.8E-05 35.5 20.5 84 49-135 150-247 (414)
174 KOG2048 WD40 repeat protein [G 93.8 5.3 0.00012 36.7 15.6 134 48-223 404-547 (691)
175 KOG0271 Notchless-like WD40 re 93.8 0.68 1.5E-05 39.7 9.3 101 10-134 367-471 (480)
176 KOG2394 WD40 protein DMR-N9 [G 93.7 1.3 2.7E-05 39.7 11.2 65 67-135 289-353 (636)
177 KOG2315 Predicted translation 93.7 4.9 0.00011 36.1 14.7 117 48-185 250-370 (566)
178 PRK10115 protease 2; Provision 93.7 6.4 0.00014 37.1 18.3 48 50-100 154-208 (686)
179 PF06739 SBBP: Beta-propeller 93.6 0.094 2E-06 29.6 2.9 18 11-28 13-30 (38)
180 PF14870 PSII_BNR: Photosynthe 93.6 3.9 8.4E-05 34.4 16.2 84 48-135 123-207 (302)
181 KOG0289 mRNA splicing factor [ 93.5 4.8 0.0001 35.3 15.5 61 71-135 350-410 (506)
182 KOG1539 WD repeat protein [Gen 93.4 1.6 3.5E-05 41.0 11.7 102 13-135 496-597 (910)
183 KOG1274 WD40 repeat protein [G 93.4 5.4 0.00012 38.0 15.0 58 72-135 60-117 (933)
184 KOG0303 Actin-binding protein 93.3 3.8 8.3E-05 35.4 13.0 86 44-135 149-237 (472)
185 COG3292 Predicted periplasmic 93.3 1.3 2.8E-05 40.1 10.6 20 10-29 289-308 (671)
186 KOG0278 Serine/threonine kinas 93.2 1.4 3.1E-05 35.8 9.9 66 67-135 220-288 (334)
187 COG4946 Uncharacterized protei 93.1 6 0.00013 35.2 14.2 40 172-212 444-485 (668)
188 PF00930 DPPIV_N: Dipeptidyl p 93.1 1.9 4.1E-05 36.9 11.4 84 47-135 258-348 (353)
189 PF14583 Pectate_lyase22: Olig 93.0 3.2 7E-05 36.0 12.3 63 39-101 158-226 (386)
190 PRK13684 Ycf48-like protein; P 92.9 5.3 0.00012 34.0 16.0 84 48-135 151-235 (334)
191 KOG1273 WD40 repeat protein [G 92.9 5.1 0.00011 33.8 16.0 110 72-223 110-225 (405)
192 PF10647 Gmad1: Lipoprotein Lp 92.6 4.8 0.0001 32.8 15.3 66 70-135 113-186 (253)
193 PF05694 SBP56: 56kDa selenium 92.5 5.1 0.00011 35.4 13.0 122 10-135 180-333 (461)
194 KOG0315 G-protein beta subunit 92.4 5.3 0.00011 32.6 15.7 130 47-187 103-233 (311)
195 KOG0283 WD40 repeat-containing 92.3 7.6 0.00016 36.3 14.5 134 47-223 390-531 (712)
196 KOG1407 WD40 repeat protein [F 92.3 5.5 0.00012 32.7 14.4 119 48-186 86-206 (313)
197 PF01731 Arylesterase: Arylest 92.0 1.7 3.6E-05 29.4 7.6 21 115-135 54-75 (86)
198 KOG0273 Beta-transducin family 91.9 8.4 0.00018 34.1 15.0 104 76-223 417-522 (524)
199 KOG0286 G-protein beta subunit 91.8 6.9 0.00015 32.6 15.6 90 42-135 159-250 (343)
200 PF02333 Phytase: Phytase; In 91.7 7.6 0.00017 33.7 13.1 69 66-135 205-281 (381)
201 KOG0640 mRNA cleavage stimulat 91.7 7.4 0.00016 32.8 12.6 67 66-135 170-237 (430)
202 KOG0268 Sof1-like rRNA process 91.6 0.6 1.3E-05 39.8 6.1 84 48-135 209-293 (433)
203 PF06739 SBBP: Beta-propeller 91.6 0.18 3.8E-06 28.4 2.2 20 116-135 14-33 (38)
204 KOG4441 Proteins containing BT 91.2 6.7 0.00014 36.1 13.1 126 48-213 395-530 (571)
205 KOG4441 Proteins containing BT 91.2 9.2 0.0002 35.2 13.9 128 48-215 348-485 (571)
206 PHA02713 hypothetical protein; 91.1 9.7 0.00021 34.9 14.1 126 49-213 272-406 (557)
207 KOG0310 Conserved WD40 repeat- 91.1 6.3 0.00014 34.8 12.0 85 48-135 79-175 (487)
208 KOG0772 Uncharacterized conser 91.0 6.1 0.00013 35.4 11.9 87 46-135 336-430 (641)
209 KOG0316 Conserved WD40 repeat- 90.8 7.6 0.00017 31.5 13.3 85 46-135 78-164 (307)
210 KOG0296 Angio-associated migra 90.7 10 0.00022 32.6 16.2 64 68-135 106-169 (399)
211 KOG1036 Mitotic spindle checkp 90.6 9.1 0.0002 32.0 14.2 76 4-100 7-84 (323)
212 KOG0294 WD40 repeat-containing 90.6 9.4 0.0002 32.2 14.4 85 43-134 101-188 (362)
213 PF05935 Arylsulfotrans: Aryls 90.5 13 0.00027 33.5 18.2 143 48-222 127-299 (477)
214 KOG0302 Ribosome Assembly prot 90.2 11 0.00024 32.5 12.8 133 50-223 235-377 (440)
215 KOG0973 Histone transcription 90.1 5.7 0.00012 38.2 11.7 113 15-147 134-254 (942)
216 PF14870 PSII_BNR: Photosynthe 90.0 11 0.00023 31.8 14.5 62 68-135 186-253 (302)
217 KOG2096 WD40 repeat protein [G 89.6 6.1 0.00013 33.4 10.2 59 68-127 86-145 (420)
218 PHA03098 kelch-like protein; P 89.3 16 0.00035 33.0 14.6 137 49-223 358-510 (534)
219 KOG0973 Histone transcription 89.2 3.7 7.9E-05 39.5 9.7 62 72-137 133-194 (942)
220 PF07494 Reg_prop: Two compone 89.2 0.42 9.1E-06 23.9 2.1 18 116-133 6-23 (24)
221 KOG0275 Conserved WD40 repeat- 88.6 11 0.00025 31.8 11.2 104 11-135 349-458 (508)
222 KOG0284 Polyadenylation factor 88.3 2.7 5.8E-05 36.4 7.5 111 2-135 172-285 (464)
223 PF10647 Gmad1: Lipoprotein Lp 88.3 12 0.00027 30.4 14.0 80 48-135 1-86 (253)
224 KOG0918 Selenium-binding prote 87.9 2.6 5.5E-05 36.6 7.1 29 72-100 315-343 (476)
225 PHA02790 Kelch-like protein; P 87.5 19 0.0004 32.3 13.0 82 48-135 286-372 (480)
226 KOG0646 WD40 repeat protein [G 87.5 20 0.00042 31.7 13.7 68 14-99 85-153 (476)
227 PF14269 Arylsulfotran_2: Aryl 87.5 16 0.00035 30.7 17.0 29 71-100 146-174 (299)
228 KOG0296 Angio-associated migra 87.3 18 0.00039 31.1 17.7 135 47-222 126-271 (399)
229 KOG4497 Uncharacterized conser 87.1 5.9 0.00013 33.6 8.7 92 47-144 69-161 (447)
230 TIGR02608 delta_60_rpt delta-6 86.4 1.9 4E-05 26.5 4.2 42 118-188 4-45 (55)
231 KOG4378 Nuclear protein COP1 [ 86.4 14 0.0003 33.1 10.9 59 73-135 169-230 (673)
232 KOG3881 Uncharacterized conser 86.4 10 0.00023 32.7 9.9 105 71-220 205-315 (412)
233 KOG2919 Guanine nucleotide-bin 86.2 7 0.00015 33.1 8.6 32 68-99 250-281 (406)
234 KOG0279 G protein beta subunit 86.1 18 0.0004 30.0 16.3 65 67-135 62-126 (315)
235 KOG0639 Transducin-like enhanc 86.0 4.5 9.8E-05 36.2 7.8 57 73-136 514-574 (705)
236 KOG0288 WD40 repeat protein Ti 86.0 23 0.0005 31.0 14.6 116 48-204 321-440 (459)
237 KOG0918 Selenium-binding prote 85.8 5.9 0.00013 34.4 8.2 22 68-89 388-409 (476)
238 KOG0771 Prolactin regulatory e 85.6 20 0.00044 31.1 11.4 31 67-97 185-215 (398)
239 KOG1215 Low-density lipoprotei 85.6 24 0.00052 34.2 13.4 95 21-135 448-544 (877)
240 PF15416 DUF4623: Domain of un 85.4 22 0.00047 30.4 11.1 116 78-224 141-271 (442)
241 KOG2106 Uncharacterized conser 85.2 28 0.00061 31.3 14.5 79 47-130 220-303 (626)
242 KOG0319 WD40-repeat-containing 84.8 9.2 0.0002 35.6 9.4 57 74-135 25-83 (775)
243 KOG0301 Phospholipase A2-activ 84.8 31 0.00067 32.2 12.6 51 47-98 198-248 (745)
244 KOG0646 WD40 repeat protein [G 84.6 28 0.00061 30.8 15.7 113 83-223 191-306 (476)
245 KOG1009 Chromatin assembly com 84.4 6.1 0.00013 34.2 7.7 64 67-134 122-185 (434)
246 KOG0273 Beta-transducin family 84.1 24 0.00052 31.4 11.2 110 69-223 236-346 (524)
247 PHA03098 kelch-like protein; P 83.7 33 0.00072 31.0 16.3 125 49-213 311-445 (534)
248 KOG2106 Uncharacterized conser 83.5 34 0.00073 30.9 15.6 29 68-97 368-396 (626)
249 KOG4328 WD40 protein [Function 83.5 26 0.00057 31.0 11.2 115 71-222 372-493 (498)
250 PF00400 WD40: WD domain, G-be 83.1 5.5 0.00012 21.5 5.5 30 67-97 10-39 (39)
251 KOG0284 Polyadenylation factor 83.1 17 0.00038 31.6 9.9 62 69-134 181-242 (464)
252 KOG2111 Uncharacterized conser 82.8 18 0.00039 30.5 9.6 67 16-100 187-257 (346)
253 KOG2394 WD40 protein DMR-N9 [G 82.4 4.5 9.6E-05 36.4 6.3 69 12-98 292-361 (636)
254 KOG0268 Sof1-like rRNA process 82.2 13 0.00028 32.0 8.6 61 71-135 190-250 (433)
255 KOG0283 WD40 repeat-containing 82.2 46 0.00099 31.4 15.0 79 3-101 404-483 (712)
256 PLN00033 photosystem II stabil 81.9 35 0.00076 29.9 16.6 59 73-135 243-301 (398)
257 KOG0647 mRNA export protein (c 81.8 19 0.00041 30.2 9.3 67 69-136 28-95 (347)
258 KOG1407 WD40 repeat protein [F 81.5 29 0.00062 28.7 13.9 64 68-135 147-210 (313)
259 TIGR03548 mutarot_permut cycli 81.1 31 0.00068 28.9 14.8 52 48-100 138-195 (323)
260 COG5276 Uncharacterized conser 81.0 32 0.0007 29.0 11.9 60 70-135 88-148 (370)
261 PF02897 Peptidase_S9_N: Proly 80.8 37 0.0008 29.5 15.4 107 49-191 252-369 (414)
262 KOG1539 WD repeat protein [Gen 79.7 51 0.0011 31.5 12.2 71 12-100 450-524 (910)
263 KOG4649 PQQ (pyrrolo-quinoline 79.6 34 0.00074 28.3 10.4 56 75-135 100-157 (354)
264 KOG1963 WD40 repeat protein [G 79.2 32 0.00069 32.7 10.9 79 45-125 269-356 (792)
265 PF07676 PD40: WD40-like Beta 79.1 6.3 0.00014 21.6 4.3 18 72-89 12-29 (39)
266 KOG0639 Transducin-like enhanc 78.6 16 0.00035 32.8 8.4 70 13-100 512-582 (705)
267 PF11768 DUF3312: Protein of u 78.1 8.2 0.00018 35.0 6.6 51 47-99 279-329 (545)
268 KOG0276 Vesicle coat complex C 77.9 60 0.0013 30.2 11.9 29 67-97 350-378 (794)
269 PF14517 Tachylectin: Tachylec 77.6 23 0.0005 28.5 8.5 69 11-99 130-206 (229)
270 KOG0265 U5 snRNP-specific prot 77.2 43 0.00093 28.2 10.5 64 69-135 48-111 (338)
271 KOG0643 Translation initiation 75.8 45 0.00097 27.7 15.5 64 72-135 97-168 (327)
272 TIGR02171 Fb_sc_TIGR02171 Fibr 75.1 30 0.00065 33.5 9.7 88 49-137 329-424 (912)
273 KOG1445 Tumor-specific antigen 74.6 23 0.00049 32.9 8.4 63 68-135 720-785 (1012)
274 PF00930 DPPIV_N: Dipeptidyl p 74.5 24 0.00052 30.1 8.5 40 48-88 306-347 (353)
275 KOG0645 WD40 repeat protein [G 74.2 49 0.0011 27.4 13.5 65 70-135 16-82 (312)
276 PF05935 Arylsulfotrans: Aryls 73.7 68 0.0015 28.8 13.2 38 49-87 167-208 (477)
277 KOG2096 WD40 repeat protein [G 73.7 56 0.0012 27.8 14.1 71 12-99 88-163 (420)
278 PHA02790 Kelch-like protein; P 73.3 69 0.0015 28.7 16.5 50 49-100 331-385 (480)
279 KOG0649 WD40 repeat protein [G 73.1 51 0.0011 27.1 16.2 107 8-136 112-228 (325)
280 KOG0649 WD40 repeat protein [G 73.0 51 0.0011 27.0 10.7 32 69-101 115-146 (325)
281 KOG0299 U3 snoRNP-associated p 72.6 18 0.0004 31.9 7.1 50 50-99 405-456 (479)
282 smart00564 PQQ beta-propeller 71.6 12 0.00027 19.4 4.1 26 19-62 4-29 (33)
283 KOG0316 Conserved WD40 repeat- 71.1 56 0.0012 26.7 11.8 58 69-135 146-204 (307)
284 PLN02193 nitrile-specifier pro 70.5 79 0.0017 28.2 14.4 52 49-100 193-253 (470)
285 KOG1009 Chromatin assembly com 70.5 40 0.00086 29.4 8.6 85 50-135 39-144 (434)
286 TIGR03803 Gloeo_Verruco Gloeo_ 70.3 16 0.00034 20.0 4.5 16 172-188 17-32 (34)
287 PF04762 IKI3: IKI3 family; I 69.8 1.2E+02 0.0026 29.9 13.2 85 50-135 237-325 (928)
288 KOG3567 Peptidylglycine alpha- 69.5 7.6 0.00016 34.4 4.2 82 14-100 413-497 (501)
289 KOG0292 Vesicle coat complex C 69.2 1.2E+02 0.0026 29.7 12.3 83 50-137 231-315 (1202)
290 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.4 53 0.0012 29.9 9.7 82 47-135 439-524 (527)
291 KOG0771 Prolactin regulatory e 68.1 83 0.0018 27.5 11.7 106 10-135 186-302 (398)
292 KOG0303 Actin-binding protein 67.4 46 0.001 29.1 8.3 62 70-135 133-194 (472)
293 KOG0322 G-protein beta subunit 67.2 15 0.00032 30.3 5.2 68 13-98 254-322 (323)
294 KOG1272 WD40-repeat-containing 66.8 42 0.0009 30.0 8.1 89 42-135 256-355 (545)
295 COG5276 Uncharacterized conser 66.6 80 0.0017 26.7 17.6 59 69-135 129-191 (370)
296 KOG1963 WD40 repeat protein [G 66.5 1.2E+02 0.0027 28.9 15.0 62 69-136 252-314 (792)
297 KOG0301 Phospholipase A2-activ 66.2 1.2E+02 0.0026 28.6 14.4 109 67-222 178-286 (745)
298 KOG0264 Nucleosome remodeling 66.0 69 0.0015 28.2 9.2 115 69-223 228-346 (422)
299 KOG0288 WD40 repeat protein Ti 65.6 18 0.00039 31.6 5.6 43 45-87 405-450 (459)
300 PLN02193 nitrile-specifier pro 65.3 1E+02 0.0022 27.5 13.9 50 49-100 244-303 (470)
301 KOG0299 U3 snoRNP-associated p 64.4 1E+02 0.0023 27.4 12.9 67 15-99 207-274 (479)
302 KOG1063 RNA polymerase II elon 64.3 1.3E+02 0.0028 28.3 13.3 93 42-135 282-382 (764)
303 PF09826 Beta_propel: Beta pro 64.3 1.2E+02 0.0025 27.8 15.9 101 92-223 249-354 (521)
304 smart00284 OLF Olfactomedin-li 63.7 82 0.0018 25.9 11.3 105 79-222 83-202 (255)
305 KOG1034 Transcriptional repres 63.0 30 0.00065 29.5 6.3 74 20-98 304-382 (385)
306 KOG0265 U5 snRNP-specific prot 62.1 96 0.0021 26.2 13.2 53 47-99 110-163 (338)
307 KOG1036 Mitotic spindle checkp 61.4 99 0.0022 26.1 14.0 55 45-100 71-125 (323)
308 TIGR03548 mutarot_permut cycli 60.5 1E+02 0.0022 25.8 14.5 81 49-135 88-181 (323)
309 KOG0285 Pleiotropic regulator 59.6 1E+02 0.0023 26.7 9.0 65 67-135 150-214 (460)
310 KOG3914 WD repeat protein WDR4 59.2 47 0.001 28.8 7.0 39 59-98 142-180 (390)
311 TIGR02171 Fb_sc_TIGR02171 Fibr 59.1 1.8E+02 0.004 28.4 12.1 28 166-193 525-552 (912)
312 KOG2314 Translation initiation 58.6 1E+02 0.0023 28.3 9.2 83 49-134 472-557 (698)
313 PF13570 PQQ_3: PQQ-like domai 58.5 29 0.00064 19.0 5.2 38 181-223 1-38 (40)
314 KOG4547 WD40 repeat-containing 57.0 1.6E+02 0.0034 27.0 13.8 86 45-134 76-164 (541)
315 KOG3567 Peptidylglycine alpha- 57.0 20 0.00044 31.8 4.5 21 115-135 467-487 (501)
316 KOG0322 G-protein beta subunit 57.0 22 0.00047 29.4 4.4 62 70-135 253-314 (323)
317 PF15492 Nbas_N: Neuroblastoma 55.7 67 0.0015 26.7 7.1 59 74-135 3-64 (282)
318 PF13964 Kelch_6: Kelch motif 55.4 29 0.00062 20.1 3.9 35 20-65 10-44 (50)
319 PF15492 Nbas_N: Neuroblastoma 54.0 77 0.0017 26.3 7.2 28 72-100 47-74 (282)
320 KOG2048 WD40 repeat protein [G 53.7 1.9E+02 0.0042 27.1 16.3 65 5-87 64-129 (691)
321 PF01011 PQQ: PQQ enzyme repea 53.7 36 0.00078 18.6 3.9 19 172-190 10-29 (38)
322 KOG1523 Actin-related protein 53.5 1.4E+02 0.0031 25.4 9.8 62 72-135 14-77 (361)
323 KOG4649 PQQ (pyrrolo-quinoline 53.1 1.3E+02 0.0029 25.0 13.0 91 5-100 55-166 (354)
324 TIGR03074 PQQ_membr_DH membran 52.1 1.1E+02 0.0024 29.4 8.9 17 172-188 414-431 (764)
325 KOG0269 WD40 repeat-containing 51.6 2.3E+02 0.0049 27.2 11.5 89 44-135 105-198 (839)
326 PLN02153 epithiospecifier prot 51.1 1.5E+02 0.0032 25.0 14.4 52 49-100 50-110 (341)
327 PF14339 DUF4394: Domain of un 51.0 1.3E+02 0.0029 24.3 8.2 67 15-100 31-104 (236)
328 KOG0645 WD40 repeat protein [G 50.3 1.5E+02 0.0032 24.7 19.4 112 6-136 57-172 (312)
329 KOG0308 Conserved WD40 repeat- 50.0 2.2E+02 0.0049 26.7 12.0 105 67-184 116-228 (735)
330 TIGR03547 muta_rot_YjhT mutatr 49.9 1.6E+02 0.0034 24.8 14.7 39 172-212 168-207 (346)
331 PF14339 DUF4394: Domain of un 49.9 79 0.0017 25.6 6.6 64 69-133 27-93 (236)
332 KOG0310 Conserved WD40 repeat- 48.6 2E+02 0.0044 25.8 16.6 64 68-135 153-217 (487)
333 PF11725 AvrE: Pathogenicity f 48.2 1.4E+02 0.003 31.3 9.0 37 48-85 381-418 (1774)
334 TIGR03547 muta_rot_YjhT mutatr 47.1 1.7E+02 0.0038 24.5 10.9 42 172-213 85-126 (346)
335 KOG0307 Vesicle coat complex C 46.0 82 0.0018 31.1 7.0 88 44-135 179-275 (1049)
336 PLN02153 epithiospecifier prot 44.9 1.9E+02 0.0041 24.4 14.8 50 49-100 101-168 (341)
337 PF08553 VID27: VID27 cytoplas 44.9 3E+02 0.0065 26.7 14.0 120 48-185 503-634 (794)
338 KOG0267 Microtubule severing p 44.8 48 0.001 31.2 5.1 86 44-134 87-174 (825)
339 PF12894 Apc4_WD40: Anaphase-p 44.5 59 0.0013 19.0 3.9 28 72-100 15-42 (47)
340 KOG1445 Tumor-specific antigen 43.9 2.5E+02 0.0054 26.5 9.3 81 50-135 653-741 (1012)
341 PRK14131 N-acetylneuraminic ac 43.8 2.1E+02 0.0045 24.6 15.3 39 172-212 189-228 (376)
342 PF15390 DUF4613: Domain of un 43.4 2.8E+02 0.0061 25.9 9.6 72 65-136 335-406 (671)
343 KOG1272 WD40-repeat-containing 42.7 1.5E+02 0.0033 26.6 7.6 87 46-136 228-315 (545)
344 KOG2315 Predicted translation 42.5 1.3E+02 0.0029 27.4 7.4 17 73-89 359-375 (566)
345 PRK13614 lipoprotein LpqB; Pro 42.3 2.9E+02 0.0062 25.7 11.1 64 71-134 436-505 (573)
346 PF03178 CPSF_A: CPSF A subuni 41.8 2E+02 0.0044 23.9 15.2 81 49-136 62-150 (321)
347 PF08553 VID27: VID27 cytoplas 40.7 58 0.0013 31.3 5.2 31 66-98 615-646 (794)
348 COG4246 Uncharacterized protei 40.5 1.3E+02 0.0027 25.1 6.4 28 71-100 137-164 (340)
349 KOG0650 WD40 repeat nucleolar 39.5 1.7E+02 0.0036 27.2 7.6 107 11-136 522-630 (733)
350 KOG1538 Uncharacterized conser 39.0 3.5E+02 0.0076 25.8 14.9 82 48-135 153-243 (1081)
351 KOG0305 Anaphase promoting com 38.8 3E+02 0.0065 24.9 10.2 49 50-99 198-247 (484)
352 COG4222 Uncharacterized protei 37.1 1.4E+02 0.0031 26.2 6.7 25 3-27 61-86 (391)
353 KOG0270 WD40 repeat-containing 37.0 3.1E+02 0.0066 24.5 14.4 80 44-126 261-341 (463)
354 PRK13614 lipoprotein LpqB; Pro 36.5 3.5E+02 0.0077 25.1 13.9 80 48-135 320-403 (573)
355 KOG1034 Transcriptional repres 36.4 2.2E+02 0.0047 24.5 7.3 83 47-132 113-199 (385)
356 PF13970 DUF4221: Domain of un 36.0 2.7E+02 0.0058 23.5 10.5 42 172-213 115-164 (333)
357 KOG1332 Vesicle coat complex C 34.7 2.6E+02 0.0057 23.0 10.4 75 50-126 36-114 (299)
358 PTZ00486 apyrase Superfamily; 33.8 2.5E+02 0.0055 24.2 7.5 43 172-214 135-182 (352)
359 KOG0281 Beta-TrCP (transducin 33.8 3.2E+02 0.0069 23.8 10.1 104 73-223 282-387 (499)
360 KOG1188 WD40 repeat protein [G 32.7 3.3E+02 0.007 23.5 12.0 140 48-224 49-196 (376)
361 KOG0264 Nucleosome remodeling 32.2 3.6E+02 0.0078 23.9 12.5 31 70-100 179-209 (422)
362 PF04762 IKI3: IKI3 family; I 31.6 1.3E+02 0.0028 29.7 6.1 49 47-96 95-147 (928)
363 PF06079 Apyrase: Apyrase; In 31.3 2.1E+02 0.0046 24.0 6.5 44 172-216 74-121 (291)
364 KOG2111 Uncharacterized conser 31.0 3.4E+02 0.0073 23.2 16.4 86 49-135 113-202 (346)
365 PRK14131 N-acetylneuraminic ac 30.2 3.5E+02 0.0077 23.2 11.0 42 172-213 106-147 (376)
366 KOG1354 Serine/threonine prote 30.1 1.9E+02 0.0041 25.1 6.0 121 5-135 159-293 (433)
367 KOG0641 WD40 repeat protein [G 29.2 3.1E+02 0.0068 22.3 16.3 28 69-97 90-117 (350)
368 KOG0643 Translation initiation 29.2 3.4E+02 0.0074 22.7 17.7 102 11-135 11-114 (327)
369 KOG0281 Beta-TrCP (transducin 28.5 2.4E+02 0.0051 24.5 6.3 48 83-136 332-380 (499)
370 KOG0306 WD40-repeat-containing 28.4 5.5E+02 0.012 24.8 13.8 161 2-222 497-662 (888)
371 PF01344 Kelch_1: Kelch motif; 28.0 1.2E+02 0.0025 16.9 4.5 35 20-65 10-44 (47)
372 KOG0275 Conserved WD40 repeat- 27.8 3.9E+02 0.0085 22.9 11.4 30 69-99 349-378 (508)
373 PF05567 Neisseria_PilC: Neiss 26.9 1.7E+02 0.0037 25.0 5.5 53 47-100 179-240 (335)
374 PTZ00486 apyrase Superfamily; 26.0 4.3E+02 0.0094 22.8 10.6 62 72-135 113-183 (352)
375 KOG1310 WD40 repeat protein [G 25.2 5.6E+02 0.012 23.8 9.3 107 12-135 52-170 (758)
376 KOG0292 Vesicle coat complex C 25.1 6.9E+02 0.015 24.8 15.3 30 70-100 137-166 (1202)
377 COG1770 PtrB Protease II [Amin 24.9 6E+02 0.013 24.1 18.6 30 71-100 176-209 (682)
378 KOG2079 Vacuolar assembly/sort 24.7 5.7E+02 0.012 25.8 8.8 67 83-189 101-170 (1206)
379 KOG1645 RING-finger-containing 22.8 3.8E+02 0.0083 23.7 6.7 33 67-99 234-266 (463)
380 KOG1408 WD40 repeat protein [F 22.4 3.1E+02 0.0067 26.3 6.4 79 2-98 631-712 (1080)
381 KOG2314 Translation initiation 21.9 1.8E+02 0.0039 26.9 4.7 65 2-83 487-552 (698)
382 PF14157 YmzC: YmzC-like prote 21.5 1.6E+02 0.0034 18.6 3.1 18 48-65 40-57 (63)
383 KOG4547 WD40 repeat-containing 21.0 6.6E+02 0.014 23.1 9.4 50 48-100 123-173 (541)
384 PF10584 Proteasome_A_N: Prote 20.7 20 0.00043 17.7 -0.8 7 75-81 7-13 (23)
385 PF04841 Vps16_N: Vps16, N-ter 20.6 5.8E+02 0.013 22.3 11.2 54 71-131 219-276 (410)
386 PF08972 DUF1902: Domain of un 20.5 2E+02 0.0043 17.6 3.3 38 120-160 5-42 (54)
387 PF09000 Cytotoxic: Cytotoxic; 20.3 2.3E+02 0.005 19.0 3.9 22 172-193 51-72 (85)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=250.65 Aligned_cols=222 Identities=32% Similarity=0.575 Sum_probs=201.4
Q ss_pred eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107 3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF 82 (224)
Q Consensus 3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~ 82 (224)
...+|.++.+.|++.++++|.|||||++.+|.++++...+++..++|++++||+.+...+++.+++.+|||+++|||+++
T Consensus 153 ~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 153 DEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred ccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCE
Confidence 35689999999999999999999999999999999999999999999999999997777888999999999999999999
Q ss_pred EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107 83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ 162 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 162 (224)
+.++++...+|.||++.|.+.++.++|++++||+||||..+++|++||+-...++...+++..+|++|++++.++...+.
T Consensus 233 vl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~ 312 (376)
T KOG1520|consen 233 VLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMEL 312 (376)
T ss_pred EEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhh
Confidence 99999999999999999988889999998899999999999999999999999999999999999999999998765443
Q ss_pred hhh--cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeCC
Q 046107 163 LMS--TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224 (224)
Q Consensus 163 ~~~--~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~~ 224 (224)
++. ....+|..|.+.|.+|++++++++.+|..+..++.+.+++|.||++|..+++|+|++|+
T Consensus 313 ~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 313 LYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred hhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence 222 22233478888989999999999999988888888778899999999999999999986
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.94 E-value=3.1e-25 Score=180.36 Aligned_cols=155 Identities=31% Similarity=0.502 Sum_probs=123.8
Q ss_pred ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107 9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
++..|||++++++|+||||++...... ....|.||+++++ ++++.+.+++..||||+++||++.|||+++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence 899999999999999999997622110 0111899999998 888888889999999999999999999999
Q ss_pred CCCeEEEEEccC--CCcccceEeeccC--CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107 89 WKFRCIKHWLKL--GDKRDREIFIENL--PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM 164 (224)
Q Consensus 89 ~~~~I~~~~~~~--~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 164 (224)
..++|++|+++. ..+...+++++.. .+.||||++|++|+||+|....
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----------------------------- 204 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----------------------------- 204 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------------
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------------
Confidence 999999999973 3355666775432 2369999999999999999977
Q ss_pred hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeC
Q 046107 165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASI 213 (224)
Q Consensus 165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~ 213 (224)
++|.+++|+|+++..+..|.. .+|.+++. .++|||++.
T Consensus 205 -------~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 -------GRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------TEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred -------CEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 799999999999999988832 47777763 488999985
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7.6e-25 Score=182.15 Aligned_cols=170 Identities=25% Similarity=0.372 Sum_probs=130.1
Q ss_pred eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107 3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF 82 (224)
Q Consensus 3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~ 82 (224)
+..++.+.+.|||+.++++|++||++++. +. ....+..+.|+|||+++.++..+.+.+.+..||||||||||+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE
Confidence 34567889999999999999999999872 10 1222446788999999974444444445999999999999999
Q ss_pred EEEEeCCCCeEEEEEccC--CCcccce--EeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107 83 VVVCESWKFRCIKHWLKL--GDKRDRE--IFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE 158 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~--~~~~~~~--~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~ 158 (224)
||++|+..++|++|+.+. ....... ++.+..++.|||+++|++|++|++.....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g---------------------- 234 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG---------------------- 234 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC----------------------
Confidence 999999999999999862 2233333 33334578999999999999997555441
Q ss_pred hHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeCCCCe
Q 046107 159 LINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASINSNF 217 (224)
Q Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~~~~~ 217 (224)
+.|.+++|+|+++..+..|.. .+|++++. .++||+++...+.
T Consensus 235 -------------~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 235 -------------GRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred -------------ceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence 589999999999999999863 34454544 4999999988744
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.86 E-value=3.5e-21 Score=130.77 Aligned_cols=87 Identities=47% Similarity=0.892 Sum_probs=73.5
Q ss_pred cceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 14 NDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 14 n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
||++++++ |.|||||++.+|...++..++++..++|+|+++||++++.+.+++++.+||||++++|+++|+|+++...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC
Q 046107 93 CIKHWLKL 100 (224)
Q Consensus 93 I~~~~~~~ 100 (224)
|.||+++|
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 99999976
No 5
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.70 E-value=1.1e-15 Score=119.51 Aligned_cols=155 Identities=20% Similarity=0.281 Sum_probs=122.5
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
+..||--++|+|+.|...|+. ++. .+ ..-.|.|+++-+. ++++.+.+....+|||+|+-|-+..|+.|+.+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad-~~~------~l-e~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMAD-FGD------DL-EPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cccccCccCCCCceeeeeecc-ccc------cc-cccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCc
Confidence 456788999999999998862 221 11 1235677777775 78999999999999999999999999999999
Q ss_pred CeE--EEEEccCCCcccceEeecc------CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107 91 FRC--IKHWLKLGDKRDREIFIEN------LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ 162 (224)
Q Consensus 91 ~~I--~~~~~~~~~~~~~~~~~~~------~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 162 (224)
..| +.|+..++.+.+.+++++- .+-.||||++|.+|+|||+.+.+
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--------------------------- 232 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--------------------------- 232 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC---------------------------
Confidence 999 4455666667777776642 12379999999999999999998
Q ss_pred hhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEEC---CEEEEEeCC
Q 046107 163 LMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQ---GNLYLASIN 214 (224)
Q Consensus 163 ~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~---g~lyv~~~~ 214 (224)
++|+++||. ||++..+..|.. .+|++++.+ +-+|++...
T Consensus 233 ---------~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 233 ---------GTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ---------cEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEehh
Confidence 899999986 999999988854 478888665 568888743
No 6
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.67 E-value=1.4e-15 Score=121.49 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=120.5
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
=..|.+|+.++||.+||+.. ..|.+-|+||.+|+++... .....|.||.+.|||. +|++|+
T Consensus 61 G~ap~dvapapdG~VWft~q-----------------g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~ 122 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQ-----------------GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDT 122 (353)
T ss_pred CCCccccccCCCCceEEecC-----------------ccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecC
Confidence 34678999999999999974 3678889999999998774 5578899999999998 999998
Q ss_pred CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK 168 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 168 (224)
.. .|.|++.+.....+..+-.+.....-+-..+|++|++|++...+
T Consensus 123 ~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G--------------------------------- 168 (353)
T COG4257 123 GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIG--------------------------------- 168 (353)
T ss_pred cc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccc---------------------------------
Confidence 76 99999986533222222122223455778899999999987654
Q ss_pred CceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCCCCeEEEee
Q 046107 169 GAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 169 ~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~~ 222 (224)
.--|+||.-..++++..|.|. .+..+|. -+|.+|++++.+|+|++++
T Consensus 169 ----~yGrLdPa~~~i~vfpaPqG~---gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 169 ----AYGRLDPARNVISVFPAPQGG---GPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred ----cceecCcccCceeeeccCCCC---CCcceEECCCCcEEEEeccccceEEcc
Confidence 223999999999999999875 4555554 4899999999999999986
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.65 E-value=3e-14 Score=136.17 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=116.7
Q ss_pred ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---------------cCccccc
Q 046107 9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---------------EGLYFAN 72 (224)
Q Consensus 9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---------------~~~~~pn 72 (224)
.++.|.+|++++ +|.+|+++.. .++|++++..++.+..+. ..+..|+
T Consensus 681 ~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~ 743 (1057)
T PLN02919 681 VLNSPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS 743 (1057)
T ss_pred hcCCCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc
Confidence 378899999998 6899999854 456777776655444321 1356799
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee--------------c--c-----CCCCCCceEECCCCCEEEE
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI--------------E--N-----LPGGPDNINLAPDGSFWIS 131 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--------------~--~-----~~~~p~~i~~d~dG~l~va 131 (224)
||+++|||++|||+++.+++|.+++++++.. ..+. + + ....|.+++++++|++||+
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcE---EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 9999999999999999999999999864211 1110 0 0 1126999999999999999
Q ss_pred EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC------CC----CcccceeEE
Q 046107 132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP------NA----KNISFVTSA 201 (224)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~------~g----~~~~~~t~~ 201 (224)
+... ++|.++|+++..+..+... +| ..+..++.+
T Consensus 821 Ds~N------------------------------------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 821 DSYN------------------------------------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred ECCC------------------------------------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 9887 6899999876554444321 11 124456666
Q ss_pred EEE-CCEEEEEeCCCCeEEEeeC
Q 046107 202 LEF-QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 202 ~~~-~g~lyv~~~~~~~i~~~~~ 223 (224)
+.+ +|+|||++..+++|.++++
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEEC
Confidence 654 7899999999999999986
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=3.4e-13 Score=109.61 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=108.1
Q ss_pred cccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCC
Q 046107 12 FANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALS-KHGDFVVVCESW 89 (224)
Q Consensus 12 ~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~-~dg~~Lyv~~~~ 89 (224)
++++++.++ +|+||++|.. .+.|+++++++++.+.+.... |+|++++ ++| .|||++..
T Consensus 1 l~Egp~~d~~~g~l~~~D~~-----------------~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIP-----------------GGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT
T ss_pred CCcceEEECCCCEEEEEEcC-----------------CCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC
Confidence 468899997 8999999953 689999999877665443222 9999999 665 59999864
Q ss_pred CCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107 90 KFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM 164 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 164 (224)
+ +..+++..+ +.+.+.+. ....|+++++|++|++|+++......
T Consensus 61 ~--~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~-------------------------- 109 (246)
T PF08450_consen 61 G--IAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA-------------------------- 109 (246)
T ss_dssp C--EEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT--------------------------
T ss_pred c--eEEEecCCC---cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcc--------------------------
Confidence 4 444576542 34444432 22479999999999999999876311
Q ss_pred hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107 165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~ 223 (224)
.....++|++++++|+....... +..+..++.+ +..||+++...++|.++++
T Consensus 110 --~~~~~g~v~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 110 --SGIDPGSVYRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp --TCGGSEEEEEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred --ccccccceEEECCCCeEEEEecC-----cccccceEECCcchheeecccccceeEEEec
Confidence 00001789999999776555432 3345566544 5679999999999999986
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.54 E-value=2.3e-13 Score=108.92 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=118.6
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCC
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~ 89 (224)
...|..++|++|+||||-. .|.--|+||..+.++++ ......|+|||..|||. +|+++..
T Consensus 148 ~nlet~vfD~~G~lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred CcccceeeCCCccEEEeec------------------cccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 4457788999999999963 24444899987777766 34678899999999997 9999999
Q ss_pred CCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107 90 KFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG 167 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 167 (224)
.+.|.++++.. +..+++... +...-..+-.|+.|++|++++..
T Consensus 209 gnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-------------------------------- 253 (353)
T COG4257 209 GNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-------------------------------- 253 (353)
T ss_pred ccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC--------------------------------
Confidence 99999999854 233444211 12245778889999999999888
Q ss_pred CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
+++.+|||.-+.-..+..|+-. ...-+.-++..|++|+.++.++.|.|++
T Consensus 254 ----g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 254 ----GSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred ----ceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecC
Confidence 7999999998877888887543 3344444666799999999999999986
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=6.9e-12 Score=120.19 Aligned_cols=160 Identities=14% Similarity=0.209 Sum_probs=112.2
Q ss_pred cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------------Cccccc
Q 046107 8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------------GLYFAN 72 (224)
Q Consensus 8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------------~~~~pn 72 (224)
.++.+|.++++++ +|+|||+|.. .++|.++|.++.....+.. .+..|.
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~-----------------n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~ 627 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSN-----------------HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ 627 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECC-----------------CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc
Confidence 5689999999997 5789999954 5788899987433322222 145699
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec---------c-------CCCCCCceEECC-CCCEEEEEecC
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE---------N-------LPGGPDNINLAP-DGSFWISLIKM 135 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---------~-------~~~~p~~i~~d~-dG~l~va~~~~ 135 (224)
||+++++++.|||+++.+++|.++++.++. .+.+.. + ....|.++++++ +|.+|+++...
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 999999988899999999999999986432 222211 0 013689999999 68899999877
Q ss_pred CchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC------C-----CCcccceeEEEEE
Q 046107 136 NSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP------N-----AKNISFVTSALEF 204 (224)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~------~-----g~~~~~~t~~~~~ 204 (224)
..|.++++....+..+... . ...+..++.++.+
T Consensus 705 ------------------------------------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavs 748 (1057)
T PLN02919 705 ------------------------------------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS 748 (1057)
T ss_pred ------------------------------------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEe
Confidence 5677777654433333211 0 0123345555543
Q ss_pred --CCEEEEEeCCCCeEEEeeC
Q 046107 205 --QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 205 --~g~lyv~~~~~~~i~~~~~ 223 (224)
+++||+++..+++|.++++
T Consensus 749 pdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 749 PDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEEC
Confidence 4679999999999999985
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.44 E-value=2.1e-11 Score=104.92 Aligned_cols=189 Identities=14% Similarity=0.237 Sum_probs=119.7
Q ss_pred ceeeecc-ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCc-eEEEEeCCC--C---eEEEEecCcccccee
Q 046107 2 IKIHLCH-LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHG-QLLRYDPSS--K---QVSIVLEGLYFANGV 74 (224)
Q Consensus 2 ~~~~~~~-~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~--g---~~~~~~~~~~~pngi 74 (224)
|+.+... .+..|..|+++++|+|||+++. .|... .......+ +|++++... | +.+.+.+++..|+||
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~-~y~~~-----~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGI-TYSRP-----AGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGL 77 (367)
T ss_pred EEEEECCCccCCCceeeECCCCCEEEEeCC-cCCCC-----CCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccce
Confidence 4455543 5899999999999999999874 22211 00112234 888887531 2 356778899999999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEE-ccCC--CcccceEeeccCC-------CCCCceEECCCCCEEEEEecCCchhhhhhc
Q 046107 75 ALSKHGDFVVVCESWKFRCIKHW-LKLG--DKRDREIFIENLP-------GGPDNINLAPDGSFWISLIKMNSSAVETVH 144 (224)
Q Consensus 75 a~~~dg~~Lyv~~~~~~~I~~~~-~~~~--~~~~~~~~~~~~~-------~~p~~i~~d~dG~l~va~~~~~~~~~~~~~ 144 (224)
++.++| |||++. .+|+++. .++. ..++.+++++..+ ..+.++++++||+||++..........
T Consensus 78 ~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~--- 150 (367)
T TIGR02604 78 AVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT--- 150 (367)
T ss_pred eEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec---
Confidence 999987 999974 4799885 3332 2224556654322 238899999999999998864221100
Q ss_pred cChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCCCCeEEEe
Q 046107 145 SSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASINSNFIGKL 221 (224)
Q Consensus 145 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~ 221 (224)
.|. .+. . ......+.|+|++|+|...+.+.. | +.++-.++. ..|++|+++.......++
T Consensus 151 -~~~-------~~~----~--~~~~~~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 151 -RPG-------TSD----E--SRQGLGGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPLCRV 210 (367)
T ss_pred -cCC-------Ccc----C--cccccCceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCceeEE
Confidence 000 000 0 001112789999999987777753 3 244555554 479999998765544443
No 12
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=99.25 E-value=9.4e-11 Score=79.22 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=67.0
Q ss_pred cceEEecCCcEEEEeCCCCCCcchhh--hhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107 14 NDVIEASDGSLYITVSSTKFAPKAYY--LDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 14 n~v~~~~~G~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~ 91 (224)
|||++.....+|+|+++ +-...|+ .+.....+.|.|..+|++ +++.+.+++.+||||+++||++.|||++...+
T Consensus 1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 68888877799999987 3333443 234445678999999974 67888999999999999999999999999999
Q ss_pred eEEEEEcc
Q 046107 92 RCIKHWLK 99 (224)
Q Consensus 92 ~I~~~~~~ 99 (224)
.|..|..+
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99999763
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=7.3e-10 Score=92.63 Aligned_cols=166 Identities=17% Similarity=0.260 Sum_probs=112.0
Q ss_pred cccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEE
Q 046107 8 HLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVC 86 (224)
Q Consensus 8 ~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~ 86 (224)
......++.+.+++. .||++|- ..++++++++.+++.+.+......++++.++.+|. |+++
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI-----------------~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~ 83 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDI-----------------LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIAC 83 (307)
T ss_pred cccccccCccCcCCCCEEEEEeC-----------------CCCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEE
Confidence 334556676666654 5888883 47899999998788888877777899999998874 7777
Q ss_pred eCCCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107 87 ESWKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ 162 (224)
Q Consensus 87 ~~~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 162 (224)
+. .+++++++.+. ..+.+.+. ..-.|++..++++|++|+++... .. .+.
T Consensus 84 ~~---g~~~~~~~~~~--~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-~~~-------------------- 136 (307)
T COG3386 84 EH---GVRLLDPDTGG--KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-LGK-------------------- 136 (307)
T ss_pred cc---ccEEEeccCCc--eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-cCc--------------------
Confidence 64 34445543211 11333322 22479999999999999999883 00 000
Q ss_pred hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
...+..+.|+|+||+|..++.+... -.+++--...+++.+||+++...++|.++++
T Consensus 137 ---~~~~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 137 ---SEERPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred ---cccCCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 1223347999999999888776431 1122222334566799999999999999976
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=1.1e-09 Score=93.49 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=106.3
Q ss_pred ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeC--CCCeEEE----EecCccccceeEEecCCC
Q 046107 9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP--SSKQVSI----VLEGLYFANGVALSKHGD 81 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~g~~~~----~~~~~~~pngia~~~dg~ 81 (224)
.-..|+.+.++|||+ +|++|.. ..+|+.++. .+++++. ......+|..++++|||+
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~ 204 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK 204 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS
T ss_pred ccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC
Confidence 356788999999985 8888843 345555554 4333433 235678899999999999
Q ss_pred EEEEEeCCCCeEEEEEcc--CCCcccceEeecc---CCC--CCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHH
Q 046107 82 FVVVCESWKFRCIKHWLK--LGDKRDREIFIEN---LPG--GPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLL 153 (224)
Q Consensus 82 ~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~---~~~--~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~ 153 (224)
++||++..++.|..|+.+ .+.+...+.+... ..+ .|.+|++++||+ ||+++...++
T Consensus 205 ~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s---------------- 268 (345)
T PF10282_consen 205 YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS---------------- 268 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE----------------
T ss_pred EEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE----------------
Confidence 999999999999999987 2222222222111 111 578899999997 8888877632
Q ss_pred hhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCC-CCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107 154 EEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPN-AKNISFVTSAL--EFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~-g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~ 223 (224)
-.++.+|++ |++...-..+. |. .+..+. +++..||+++..++.|.+|++
T Consensus 269 ------------------I~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 269 ------------------ISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp ------------------EEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ------------------EEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 467888654 76644322232 32 244444 467899999999999999875
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=4.6e-09 Score=88.82 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=99.6
Q ss_pred ccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEEE------EecCccccceeEEecCCCE
Q 046107 11 RFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVSI------VLEGLYFANGVALSKHGDF 82 (224)
Q Consensus 11 ~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~~------~~~~~~~pngia~~~dg~~ 82 (224)
..|+.++++++| .+|+++.. .+.|..+|.++ +.+.. .......|++++++|||++
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 457888999988 47777632 45666666542 33321 1223567999999999999
Q ss_pred EEEEeCCCCeEEEEEccC--CCcccceEeeccC-----CCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHh
Q 046107 83 VVVCESWKFRCIKHWLKL--GDKRDREIFIENL-----PGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLE 154 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~--~~~~~~~~~~~~~-----~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~ 154 (224)
|||++...+.|..|+++. +.+...+.+.... +..|.+++++++|+ +|+++...+.
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~----------------- 251 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL----------------- 251 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-----------------
Confidence 999999899999999863 1221111111000 11344689999997 7887554421
Q ss_pred hchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 155 EHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
-.|+.++.++...+.+. .+.+. .+..-.+..++..||+++..++.|.++++
T Consensus 252 -----------------I~v~~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 252 -----------------ISVFSVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred -----------------EEEEEEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 45677777764333322 12232 11111223457899999998999998865
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=8.3e-09 Score=88.06 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=101.7
Q ss_pred ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--------------cCccccceeE
Q 046107 11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--------------EGLYFANGVA 75 (224)
Q Consensus 11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--------------~~~~~pngia 75 (224)
..|-.++++++|+ ||+++-. .+.-.++.++.+ |.+.... .....|+.+.
T Consensus 87 ~~p~~i~~~~~g~~l~vany~---------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYG---------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETT---------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred CCcEEEEEecCCCEEEEEEcc---------------CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEE
Confidence 4566789999884 7777632 122234555554 5444321 1345577999
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccCCC--cccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHH
Q 046107 76 LSKHGDFVVVCESWKFRCIKHWLKLGD--KRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQL 152 (224)
Q Consensus 76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~--~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~ 152 (224)
++|||++|||++....+|+.|+.+... +.....+.-.....|..|++.++|+ +|+.....+.
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~--------------- 215 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT--------------- 215 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE---------------
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc---------------
Confidence 999999999999999999999997532 3222222111234899999999987 8888766521
Q ss_pred HhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEE--EEeC-CCCC-cccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107 153 LEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIR--EFND-PNAK-NISFVTSALEF--QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~--~~~~-~~g~-~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~ 223 (224)
-.++.++ ++|++.. .+.. |.+. ....++.+..+ +..||+++..++.|.+|++
T Consensus 216 -------------------v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 216 -------------------VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp -------------------EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred -------------------EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 3566676 4565432 2321 2211 11234555444 6789999999999999987
No 17
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.11 E-value=1.4e-08 Score=88.73 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=78.2
Q ss_pred ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-------ec-CccccceeEEecCC
Q 046107 9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-------LE-GLYFANGVALSKHG 80 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-------~~-~~~~pngia~~~dg 80 (224)
.+..|.+|++.+||++|||.. ..|+|+++++.++..+.+ .. +..++.|||++||-
T Consensus 28 GL~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 488999999999999999972 258999998764433222 11 45677899999873
Q ss_pred ------CEEEEEeCC---------CCeEEEEEccC--CCcccceEeeccCCC----CCCceEECCCCCEEEEEecC
Q 046107 81 ------DFVVVCESW---------KFRCIKHWLKL--GDKRDREIFIENLPG----GPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 81 ------~~Lyv~~~~---------~~~I~~~~~~~--~~~~~~~~~~~~~~~----~p~~i~~d~dG~l~va~~~~ 135 (224)
++|||+.+. ..+|.|+..+. ..+...++++...+. .-..|++++||.||++.+..
T Consensus 91 ~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 91 MQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 479998632 46899998752 233444455443332 34689999999999999886
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.8e-08 Score=87.12 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=114.3
Q ss_pred cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107 12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
.|.+++++++| .+|+++.. ...+.+..+|..++++.........|.+++++|+|+.+||++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred CCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCC
Confidence 78999999987 89999964 136789999988776655544455789999999999999999999
Q ss_pred CeEEEEEccCCCcccce--EeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107 91 FRCIKHWLKLGDKRDRE--IFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG 167 (224)
Q Consensus 91 ~~I~~~~~~~~~~~~~~--~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 167 (224)
+.|..++.++....... ... .....|.+++++++|+ +|++.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~------------------------------- 229 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG------------------------------- 229 (381)
T ss_pred CeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC-------------------------------
Confidence 99999998753221100 001 2335899999999998 898887761
Q ss_pred CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
...+.++|.....+.....+.+...+..-...+++..+|++....+.+.+++.
T Consensus 230 ---~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 230 ---SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ---CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 05788888764443333233332111222334667888888888888888764
No 19
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.04 E-value=7.8e-09 Score=87.76 Aligned_cols=161 Identities=17% Similarity=0.281 Sum_probs=101.5
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE-EEEe-------cCccccceeEEecC--
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV-SIVL-------EGLYFANGVALSKH-- 79 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~-~~~~-------~~~~~pngia~~~d-- 79 (224)
|+.|..|++.|||++||++ ..|+|++++.+ +.. ..+. .+.....||+++|+
T Consensus 1 L~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~ 61 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFA 61 (331)
T ss_dssp ESSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCC
T ss_pred CCCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccC
Confidence 4678899999999999997 26899999965 444 2221 24466779999994
Q ss_pred -CCEEEEEeCCC--------CeEEEEEccCC--CcccceEeeccCC------CCCCceEECCCCCEEEEEecCCchhhhh
Q 046107 80 -GDFVVVCESWK--------FRCIKHWLKLG--DKRDREIFIENLP------GGPDNINLAPDGSFWISLIKMNSSAVET 142 (224)
Q Consensus 80 -g~~Lyv~~~~~--------~~I~~~~~~~~--~~~~~~~~~~~~~------~~p~~i~~d~dG~l~va~~~~~~~~~~~ 142 (224)
..+|||+.+.. .+|.|+..+.. .+...++++...+ .....|++++||.||++.+..... +
T Consensus 62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~- 138 (331)
T PF07995_consen 62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--D- 138 (331)
T ss_dssp CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--G-
T ss_pred CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--c-
Confidence 34799998743 58999988643 3444455543322 134669999999999999887430 0
Q ss_pred hccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEE-------------EEEeCCCCCcccceeEEEEE-C-CE
Q 046107 143 VHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSII-------------REFNDPNAKNISFVTSALEF-Q-GN 207 (224)
Q Consensus 143 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~-------------~~~~~~~g~~~~~~t~~~~~-~-g~ 207 (224)
..+ ......++|+|++++|++. +.+.. | +.++-.++++ . |+
T Consensus 139 ~~~--------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~ 194 (331)
T PF07995_consen 139 NAQ--------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGR 194 (331)
T ss_dssp GGC--------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTE
T ss_pred ccc--------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCc
Confidence 000 0111238999999999731 22221 2 3455566655 4 89
Q ss_pred EEEEeCCCC
Q 046107 208 LYLASINSN 216 (224)
Q Consensus 208 lyv~~~~~~ 216 (224)
||+++.+.+
T Consensus 195 l~~~d~G~~ 203 (331)
T PF07995_consen 195 LWAADNGPD 203 (331)
T ss_dssp EEEEEE-SS
T ss_pred EEEEccCCC
Confidence 999997654
No 20
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.01 E-value=2e-08 Score=86.48 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE-eCCC-----CeEEEEecC--------cccccee
Q 046107 9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY-DPSS-----KQVSIVLEG--------LYFANGV 74 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~-----g~~~~~~~~--------~~~pngi 74 (224)
.+..|++|++.++| |||++. ..|+++ +.++ ++.+.+.++ ...++++
T Consensus 70 ~l~~p~Gi~~~~~G-lyV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l 129 (367)
T TIGR02604 70 ELSMVTGLAVAVGG-VYVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL 129 (367)
T ss_pred CCCCccceeEecCC-EEEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc
Confidence 36789999999998 999962 357777 3321 144444432 2448899
Q ss_pred EEecCCCEEEEEeCC-------------------CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 75 ALSKHGDFVVVCESW-------------------KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 75 a~~~dg~~Lyv~~~~-------------------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+++|||+ |||+... .+.|+++++++. +.+++..+ ...|.|+++|++|++|+++...
T Consensus 130 ~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 130 AWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 9999996 9998762 157999999863 34565533 3479999999999999998754
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=6e-08 Score=83.90 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
...|+++++.++|+ +|+++.. ...+..+|..+.+......-...|.+++++++++.+||++.
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~-----------------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~ 135 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGD-----------------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANA 135 (381)
T ss_pred CccccceeeCCCCCeEEEecCC-----------------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEec
Confidence 36789999998885 9999732 56788888554444333333449999999999999999998
Q ss_pred --CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107 89 --WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS 165 (224)
Q Consensus 89 --~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 165 (224)
.++.|.+++......... +.. ...|.+++++++|+ +|+++...
T Consensus 136 ~~~~~~vsvid~~t~~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~~------------------------------ 181 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSDD------------------------------ 181 (381)
T ss_pred ccCCceEEEEeCCCCeEEEE-Eec---CCCcceEEECCCCCeEEEEecCC------------------------------
Confidence 579999999875332221 221 12689999999998 99999655
Q ss_pred cCCCceEEEEEECCCCcEEEEEeCCCC--CcccceeEE--EEECCEEEEEeCCC--CeEEEeeC
Q 046107 166 TGKGAAAKVVKVSANGSIIREFNDPNA--KNISFVTSA--LEFQGNLYLASINS--NFIGKLPL 223 (224)
Q Consensus 166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g--~~~~~~t~~--~~~~g~lyv~~~~~--~~i~~~~~ 223 (224)
+.|..+|.++..+.. ..+.. .....+..+ ..++.++|++...+ +.+.++++
T Consensus 182 ------~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 182 ------NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred ------CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 688889988765553 22110 011122233 34577799999988 68888775
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=9.3e-08 Score=81.24 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=98.6
Q ss_pred CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCe
Q 046107 22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------WKFR 92 (224)
Q Consensus 22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~~~~ 92 (224)
.++|++|... ....++|+.+|.+++++.-..+....|+|+ ++|||++|||+++ ..+.
T Consensus 13 ~~v~V~d~~~-------------~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGH-------------FAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCcc-------------cccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence 4799998651 112489999999877776666778899997 9999999999999 8899
Q ss_pred EEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107 93 CIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST 166 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 166 (224)
|..||+...+.. .++-... ....|..+++.+||+ +||++....
T Consensus 79 V~v~D~~t~~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~------------------------------ 127 (352)
T TIGR02658 79 VEVIDPQTHLPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS------------------------------ 127 (352)
T ss_pred EEEEECccCcEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCCC------------------------------
Confidence 999998753210 1111100 012566999999997 999987742
Q ss_pred CCCceEEEEEECC-CCcEEEEEeCCCCCcccce------eEEEEECCEEEEEeCCCCe
Q 046107 167 GKGAAAKVVKVSA-NGSIIREFNDPNAKNISFV------TSALEFQGNLYLASINSNF 217 (224)
Q Consensus 167 ~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~------t~~~~~~g~lyv~~~~~~~ 217 (224)
+.|.++|. .++.+..+.-|++..+ .+ ...|.++..+.++.-..+.
T Consensus 128 -----~~V~VvD~~~~kvv~ei~vp~~~~v-y~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 128 -----PAVGVVDLEGKAFVRMMDVPDCYHI-FPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred -----CEEEEEECCCCcEEEEEeCCCCcEE-EEecCCccEEEeecCceEEEEecCCCc
Confidence 57888885 4788887776654311 11 1235566666665544443
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.94 E-value=9.8e-08 Score=80.73 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=84.8
Q ss_pred ceEEEEeCC-CCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECC
Q 046107 49 GQLLRYDPS-SKQVSIV--LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 49 g~l~~~~~~-~g~~~~~--~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
+.|..++.+ +++++.+ ......|+.++++||+++||++....+.|..|++++ +.+...... ..++.|.++++++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~ 89 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDH 89 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECC
Confidence 445444432 2554433 233467899999999999999988788998888752 122111111 1345799999999
Q ss_pred CCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEE-
Q 046107 125 DGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSAL- 202 (224)
Q Consensus 125 dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~- 202 (224)
+|+ +|++....+ . -.++.++.+|..........+. ..+..++
T Consensus 90 ~g~~l~v~~~~~~-~---------------------------------v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~ 133 (330)
T PRK11028 90 QGRFLFSASYNAN-C---------------------------------VSVSPLDKDGIPVAPIQIIEGL--EGCHSANI 133 (330)
T ss_pred CCCEEEEEEcCCC-e---------------------------------EEEEEECCCCCCCCceeeccCC--CcccEeEe
Confidence 997 666655441 0 3556666667543332211121 1233333
Q ss_pred -EECCEEEEEeCCCCeEEEeeC
Q 046107 203 -EFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 203 -~~~g~lyv~~~~~~~i~~~~~ 223 (224)
+++..+|+++...+.|.++++
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEE
Confidence 346789999999999999876
No 24
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.89 E-value=2.3e-07 Score=77.20 Aligned_cols=149 Identities=20% Similarity=0.207 Sum_probs=93.6
Q ss_pred ccccccceEEec-C-----CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---------------cC
Q 046107 9 LIRFANDVIEAS-D-----GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---------------EG 67 (224)
Q Consensus 9 ~~~~~n~v~~~~-~-----G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---------------~~ 67 (224)
+-.+.|+++++. + +.+|+||... +.|..+|..+++...+. .+
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~-----------------~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g 121 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGG-----------------PGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGG 121 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTT-----------------CEEEEEETTTTEEEEEETCGCTTS-SSEEEEETT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCc-----------------CcEEEEEccCCcEEEEecCCcceeccccceeccC
Confidence 356788999986 2 5799999762 23444444433322111 11
Q ss_pred -----ccccceeEEec---CCCEEEEEeCCCCeEEEEEcc---CCCccc-------ceEeeccCCCCCCceEECCCCCEE
Q 046107 68 -----LYFANGVALSK---HGDFVVVCESWKFRCIKHWLK---LGDKRD-------REIFIENLPGGPDNINLAPDGSFW 129 (224)
Q Consensus 68 -----~~~pngia~~~---dg~~Lyv~~~~~~~I~~~~~~---~~~~~~-------~~~~~~~~~~~p~~i~~d~dG~l~ 129 (224)
..+..||+++| ||++||+....+..++++..+ .....+ .+.+. ..++..+|+++|++|++|
T Consensus 122 ~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly 200 (287)
T PF03022_consen 122 ESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLY 200 (287)
T ss_dssp EEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEE
T ss_pred ceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEE
Confidence 12256788876 889999999999999999964 221111 12221 112356999999999999
Q ss_pred EEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-----cEEEEEeCCCCCcccceeEEEEE
Q 046107 130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-----SIIREFNDPNAKNISFVTSALEF 204 (224)
Q Consensus 130 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-----~~~~~~~~~~g~~~~~~t~~~~~ 204 (224)
+++... ++|.+.++++ +......++. .+.++..+..+
T Consensus 201 ~~~~~~------------------------------------~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~ 242 (287)
T PF03022_consen 201 FTDVEQ------------------------------------NAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKID 242 (287)
T ss_dssp EEECCC------------------------------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-
T ss_pred EecCCC------------------------------------CeEEEEeCCCCcCccchheeEEcCc--eeeccceeeec
Confidence 999988 6899999998 4445556654 36778887765
Q ss_pred C---CEEEEEeC
Q 046107 205 Q---GNLYLASI 213 (224)
Q Consensus 205 ~---g~lyv~~~ 213 (224)
. |.||+.+.
T Consensus 243 ~~~~g~L~v~sn 254 (287)
T PF03022_consen 243 PEGDGYLWVLSN 254 (287)
T ss_dssp T--TS-EEEEE-
T ss_pred cccCceEEEEEC
Confidence 5 99999883
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.7e-07 Score=76.66 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccc---cceeEEec
Q 046107 9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYF---ANGVALSK 78 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~---pngia~~~ 78 (224)
+=..|.-|++.|+|. .|+...- ..+=.+|.+++..++.+.+. .++.. ...|.+++
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 345677889999886 5555421 12334667777657766553 23333 34789999
Q ss_pred CCCEEEEEeCCCCeEEEEEcc--CCCcccceEeeccCCC-CCCceEECCCCCEEEEEecCC
Q 046107 79 HGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIENLPG-GPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~~~~-~p~~i~~d~dG~l~va~~~~~ 136 (224)
||++||+++...+.|+.|.++ ++.+...... ...+ .|+++.+++.|++.++....+
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCEEEEEccCC
Confidence 999999999999999998886 3222111111 1234 499999999999888777663
No 26
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.86 E-value=1.3e-06 Score=70.84 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=113.0
Q ss_pred ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecCccccceeEEecC
Q 046107 2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEGLYFANGVALSKH 79 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~~~~pngia~~~d 79 (224)
+++|.|.+-.+..++.+..+|.+|-+.-. -+...|.++|+++|++... .+.-.+..||++-.|
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d 100 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD 100 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC
Confidence 57888999999999999889999999632 2355799999998876543 455678889999854
Q ss_pred CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107 80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL 159 (224)
Q Consensus 80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 159 (224)
.||.-....+..++|+.+. +.....| ..++...|++.| +..+|++++..
T Consensus 101 --~l~qLTWk~~~~f~yd~~t--l~~~~~~--~y~~EGWGLt~d-g~~Li~SDGS~------------------------ 149 (264)
T PF05096_consen 101 --KLYQLTWKEGTGFVYDPNT--LKKIGTF--PYPGEGWGLTSD-GKRLIMSDGSS------------------------ 149 (264)
T ss_dssp --EEEEEESSSSEEEEEETTT--TEEEEEE--E-SSS--EEEEC-SSCEEEE-SSS------------------------
T ss_pred --EEEEEEecCCeEEEEcccc--ceEEEEE--ecCCcceEEEcC-CCEEEEECCcc------------------------
Confidence 5999999999999999964 2233333 235678999976 35799998865
Q ss_pred HHhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 160 INQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
++..+||+ -+..+.+.-. +|..+....-+-..+|.||.--+..++|.+|+-
T Consensus 150 -------------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 150 -------------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -------------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred -------------ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 78899985 5665554332 455566676766679999999999999999974
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.75 E-value=3.6e-06 Score=69.10 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=71.5
Q ss_pred cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107 12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
.+.++++.++|. +|++.. ..+.|+.+|.++++..........+..++++|+++.||++....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCAS-----------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CCCceEECCCCCEEEEEEC-----------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCC
Confidence 367888988886 667652 25678888987665544333344567899999999899998777
Q ss_pred CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+.|..+++.... ....+ .....|.+++++++|.+++.....
T Consensus 95 ~~l~~~d~~~~~--~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 95 NLVTVIDIETRK--VLAEI--PVGVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred CeEEEEECCCCe--EEeEe--eCCCCcceEEECCCCCEEEEEecC
Confidence 899999986421 11111 112357899999999987765543
No 28
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.73 E-value=1.5e-07 Score=79.21 Aligned_cols=140 Identities=16% Similarity=0.253 Sum_probs=94.2
Q ss_pred eeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-----cCccccceeEEec
Q 046107 5 HLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-----EGLYFANGVALSK 78 (224)
Q Consensus 5 ~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-----~~~~~pngia~~~ 78 (224)
.+|+|+ +++++..| ++|++|.. - -|+.+++.+++.+.+. ....+.|++.+++
T Consensus 113 ~CGRPL----Gl~f~~~ggdL~VaDAY-----------------l-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~ 170 (376)
T KOG1520|consen 113 LCGRPL----GIRFDKKGGDLYVADAY-----------------L-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP 170 (376)
T ss_pred ccCCcc----eEEeccCCCeEEEEecc-----------------e-eeEEECCCCCcceeccccccCeeeeecCceeEcC
Confidence 345555 99999876 99999965 2 3889999866655443 2467889999999
Q ss_pred CCCEEEEEeCCC-----------------CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhh
Q 046107 79 HGDFVVVCESWK-----------------FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVE 141 (224)
Q Consensus 79 dg~~Lyv~~~~~-----------------~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~ 141 (224)
+|. +|++|+++ +|+.+||+.. .+.+++.+++ ..|+|+++.+|+.+.+........+..
T Consensus 171 ~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ri~r 245 (376)
T KOG1520|consen 171 EGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGL-YFPNGLALSPDGSFVLVAETTTARIKR 245 (376)
T ss_pred CCe-EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhcc-cccccccCCCCCCEEEEEeeccceeee
Confidence 765 99999754 6788888754 3455666544 479999999999866665555444444
Q ss_pred hhccChhH--HHHHhh-chhhHHhhhhcCCCceEEEEEECCCCcE
Q 046107 142 TVHSSKNR--KQLLEE-HPELINQLMSTGKGAAAKVVKVSANGSI 183 (224)
Q Consensus 142 ~~~~~p~~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~G~~ 183 (224)
+....|.. .++.+. +|.+ +. + +|.+.+|..
T Consensus 246 ywi~g~k~gt~EvFa~~LPG~-------PD---N--IR~~~~G~f 278 (376)
T KOG1520|consen 246 YWIKGPKAGTSEVFAEGLPGY-------PD---N--IRRDSTGHF 278 (376)
T ss_pred eEecCCccCchhhHhhcCCCC-------Cc---c--eeECCCCCE
Confidence 44444543 233333 6652 22 2 567777754
No 29
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.72 E-value=3.6e-07 Score=82.99 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=112.7
Q ss_pred eeeeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107 3 KIHLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD 81 (224)
Q Consensus 3 ~~~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~ 81 (224)
|++=.+.+.+|++||+|--+ ++|+||+-. -.-.+-.+|.+ -+...+.+++-.|.+|++++=++
T Consensus 1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rg 1123 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRG 1123 (1289)
T ss_pred ceeecccCCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccC
Confidence 56677889999999999755 799999641 11124455643 22334568999999999999777
Q ss_pred EEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC--EEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107 82 FVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS--FWISLIKMNSSAVETVHSSKNRKQLLEEHP 157 (224)
Q Consensus 82 ~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~--l~va~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (224)
.||++|+++ -+|-+.+++| .+.++++...-+.|+|+.+|+.-+ -||-.+..
T Consensus 1124 nLYwtDWnRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~---------------------- 1178 (1289)
T KOG1214|consen 1124 NLYWTDWNRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTK---------------------- 1178 (1289)
T ss_pred ceeeccccccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCCc----------------------
Confidence 799999764 4788899988 456788765567999999999876 45554443
Q ss_pred hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
++--+.|+|.-.+++.. + +.-+-.+..+++.+|.++|..|+|.-+++
T Consensus 1179 ---------------rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1179 ---------------RLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred ---------------ceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 44556666654443321 1 23344455567779999999998877654
No 30
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.66 E-value=1.7e-06 Score=74.47 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=92.1
Q ss_pred ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107 13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~ 91 (224)
+..+.+.+||+ +|+++ .+|.|..+|..++++.........|.|+++++||++||+++...+
T Consensus 39 h~~~~~s~Dgr~~yv~~------------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVAN------------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp EEEEE-TT-SSEEEEEE------------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred eeEEEecCCCCEEEEEc------------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence 34566778885 77775 257899999987765555556778999999999999999999999
Q ss_pred eEEEEEccCCCcccceEeecc-CC-----CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107 92 RCIKHWLKLGDKRDREIFIEN-LP-----GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS 165 (224)
Q Consensus 92 ~I~~~~~~~~~~~~~~~~~~~-~~-----~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 165 (224)
.+..+|..+. ...+.+... .+ ..+.++...+....|+.+....
T Consensus 101 ~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~----------------------------- 149 (369)
T PF02239_consen 101 TVSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT----------------------------- 149 (369)
T ss_dssp EEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-----------------------------
T ss_pred ceeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEccC-----------------------------
Confidence 9999997642 122222111 11 1233566666677677665542
Q ss_pred cCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107 166 TGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 166 ~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~ 223 (224)
++|..+|.+ .+.+..-....+. .+..+..+ +..++++...+|.|+++++
T Consensus 150 ------~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 150 ------GEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp ------TEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ------CeEEEEEeccccccceeeecccc---cccccccCcccceeeecccccceeEEEee
Confidence 578888743 3332221112233 23344433 4568888899999999876
No 31
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.65 E-value=1.7e-06 Score=81.78 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=99.9
Q ss_pred ccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe----cCccccceeEEec-CCC
Q 046107 7 CHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL----EGLYFANGVALSK-HGD 81 (224)
Q Consensus 7 ~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~----~~~~~pngia~~~-dg~ 81 (224)
+..+=.|-.+|..+||.+|+.|. ..|=|+.++ |.+..+. .....-.-||++| ||
T Consensus 361 ~~~L~aPvala~a~DGSl~VGDf-------------------NyIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdg- 419 (1899)
T KOG4659|consen 361 SISLFAPVALAYAPDGSLIVGDF-------------------NYIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDG- 419 (1899)
T ss_pred cceeeceeeEEEcCCCcEEEccc-------------------hheeeecCC-CceEEEEEecCCCccceeEEEecCcCc-
Confidence 44456788899999999999983 234566666 4444332 2334445799999 76
Q ss_pred EEEEEeCCCCeEEEEEc-cCC-CcccceEeecc----CC----------------CCCCceEECCCCCEEEEEecCCchh
Q 046107 82 FVVVCESWKFRCIKHWL-KLG-DKRDREIFIEN----LP----------------GGPDNINLAPDGSFWISLIKMNSSA 139 (224)
Q Consensus 82 ~Lyv~~~~~~~I~~~~~-~~~-~~~~~~~~~~~----~~----------------~~p~~i~~d~dG~l~va~~~~~~~~ 139 (224)
.|||++..+++|+|+.- .+. ...+.++++.. +| .+|.||++|++|++|++++.
T Consensus 420 tlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t----- 494 (1899)
T KOG4659|consen 420 TLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT----- 494 (1899)
T ss_pred eEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-----
Confidence 59999999999999873 211 11223333311 01 26999999999999999875
Q ss_pred hhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC---------C------CCcccceeEEEEE
Q 046107 140 VETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP---------N------AKNISFVTSALEF 204 (224)
Q Consensus 140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~---------~------g~~~~~~t~~~~~ 204 (224)
.|-++|.+|-+...+... + ...+-++|.++.+
T Consensus 495 ---------------------------------~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~ 541 (1899)
T KOG4659|consen 495 ---------------------------------RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVD 541 (1899)
T ss_pred ---------------------------------EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeec
Confidence 456677766554443211 0 0123456666544
Q ss_pred --CCEEEEEeCCCCeEEEeeC
Q 046107 205 --QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 205 --~g~lyv~~~~~~~i~~~~~ 223 (224)
++.|||=+ +|-|.+++.
T Consensus 542 Pmdnsl~Vld--~nvvlrit~ 560 (1899)
T KOG4659|consen 542 PMDNSLLVLD--TNVVLRITV 560 (1899)
T ss_pred CCCCeEEEee--cceEEEEcc
Confidence 78888866 677777653
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.63 E-value=1.2e-05 Score=66.06 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=91.5
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
++++++.++|.++++... ....++.+|..+++..........|+.+++++||++||++....+.
T Consensus 117 ~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 117 PEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred cceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCE
Confidence 566777777765554321 1123445676555443322233567889999999988888777789
Q ss_pred EEEEEccCCCcccceEee-c--c---CCCCCCceEECCCCCE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107 93 CIKHWLKLGDKRDREIFI-E--N---LPGGPDNINLAPDGSF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS 165 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~-~--~---~~~~p~~i~~d~dG~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 165 (224)
|..|++...+. ...+. . . ....|.+++++++|+. |++....
T Consensus 181 v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~------------------------------ 228 (300)
T TIGR03866 181 VSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA------------------------------ 228 (300)
T ss_pred EEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCC------------------------------
Confidence 99999874321 11110 0 0 1124678999999985 6665444
Q ss_pred cCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107 166 TGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 166 ~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~ 223 (224)
..+..+|.+ ++.+..+.. +. .+..+. +++..||+++..++.|.++++
T Consensus 229 ------~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 229 ------NRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ------CeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 456677754 666554432 21 233444 345678888777788888875
No 33
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.4e-05 Score=66.61 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=78.7
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhH
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNR 149 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~ 149 (224)
++...++||+++|++++....+|..|+.+.+.+.......-.....|+.|++-++|. .|+...-.+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st------------ 214 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST------------ 214 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE------------
Confidence 557789999999999999999999999985444333222112235899999999998 5666554421
Q ss_pred HHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEE--EE-eCCC---CCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 150 KQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIR--EF-NDPN---AKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~--~~-~~~~---g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
-.|+.+++. |++.. .+ ..|+ |....+.--+..++.-||+++.+.+.|+.+.
T Consensus 215 ----------------------V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 215 ----------------------VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred ----------------------EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 567888875 55422 22 1232 2211111122245677999999999999887
Q ss_pred C
Q 046107 223 L 223 (224)
Q Consensus 223 ~ 223 (224)
+
T Consensus 273 V 273 (346)
T COG2706 273 V 273 (346)
T ss_pred E
Confidence 5
No 34
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.44 E-value=3.4e-06 Score=76.85 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=80.2
Q ss_pred eccccccccceEEe-cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEE
Q 046107 6 LCHLIRFANDVIEA-SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFV 83 (224)
Q Consensus 6 ~~~~~~~~n~v~~~-~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~L 83 (224)
-.-+-.-+-+|++| .+..||+||++. -+|-+-...+++.+. +..++..|.|||++.-++.+
T Consensus 1020 l~~p~~IiVGidfDC~e~mvyWtDv~g-----------------~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ 1082 (1289)
T KOG1214|consen 1020 LSLPGSIIVGIDFDCRERMVYWTDVAG-----------------RSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNM 1082 (1289)
T ss_pred EecccceeeeeecccccceEEEeecCC-----------------CccccccccCCCCceeecccCCCccceeeeecccee
Confidence 33344445567776 356799999761 123344444445444 46789999999999988899
Q ss_pred EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCC
Q 046107 84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMN 136 (224)
Q Consensus 84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~ 136 (224)
|++|+...+|-+..++|. ..++++...--.|.+|++|+ .|+||-++|...
T Consensus 1083 ywtDS~lD~IevA~LdG~---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe 1133 (1289)
T KOG1214|consen 1083 YWTDSVLDKIEVALLDGS---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE 1133 (1289)
T ss_pred eeeccccchhheeecCCc---eeeEEEeecccCcceEEeecccCceeecccccc
Confidence 999999999999999883 34555432234799999998 589999999873
No 35
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.43 E-value=1.9e-05 Score=68.13 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 47 PHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
..|.|..+|.++.++.... .+...+.+++++|||+++||++. .+.|.++|+...+ ....+ .....|.++++++|
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i--~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATI--KVGGNPRGIAVSPD 88 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEE--E-SSEEEEEEE--T
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEE--ecCCCcceEEEcCC
Confidence 3689999998766544333 33333567899999999999985 5799999996422 11112 12347999999999
Q ss_pred CC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCC---CCCcccceeE
Q 046107 126 GS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDP---NAKNISFVTS 200 (224)
Q Consensus 126 G~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~---~g~~~~~~t~ 200 (224)
|+ +|+++... +.|..+|. ..++++.+... .+..-+.++.
T Consensus 89 G~~~~v~n~~~------------------------------------~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 89 GKYVYVANYEP------------------------------------GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp TTEEEEEEEET------------------------------------TEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred CCEEEEEecCC------------------------------------CceeEeccccccceeecccccccccccCCCcee
Confidence 98 66666655 57788885 46777766432 1111123333
Q ss_pred EEE-ECCEEEEEeCC-CCeEEEeeC
Q 046107 201 ALE-FQGNLYLASIN-SNFIGKLPL 223 (224)
Q Consensus 201 ~~~-~~g~lyv~~~~-~~~i~~~~~ 223 (224)
+.. +.+..|+.+.. .+.|..++.
T Consensus 133 Iv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEET
T ss_pred EEecCCCCEEEEEEccCCeEEEEEe
Confidence 332 34444544433 577766653
No 36
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.38 E-value=7e-05 Score=60.88 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=86.5
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeC--CCCeE-----EEEecC-----ccccceeEEe
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP--SSKQV-----SIVLEG-----LYFANGVALS 77 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~g~~-----~~~~~~-----~~~pngia~~ 77 (224)
+.-+++|+...+|.+.+++.+ .+.|+.++. ++... +.+.-+ -.+-.|||++
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er-----------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEER-----------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETT-----------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred CCCceeEEEECCCEEEEEEcC-----------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 556888998888887777633 345554443 32221 112111 1234599999
Q ss_pred cCCCEEEEEe-CCCCeEEEEEc--cCCCcc--cceEeec-c-CCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhH
Q 046107 78 KHGDFVVVCE-SWKFRCIKHWL--KLGDKR--DREIFIE-N-LPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNR 149 (224)
Q Consensus 78 ~dg~~Lyv~~-~~~~~I~~~~~--~~~~~~--~~~~~~~-~-~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~ 149 (224)
+.++.||++. .....|+.++. .+..+. ....+.+ . ...-|.++++++. |++|+-....
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es-------------- 192 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES-------------- 192 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT--------------
T ss_pred CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC--------------
Confidence 9888888876 44456777765 111110 0000110 0 1135889999986 7799876665
Q ss_pred HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC-----CcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107 150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA-----KNISFVTSALEF-QGNLYLASINSNFIGKLP 222 (224)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g-----~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~ 222 (224)
.+++++|.+|+++..+....| +.++-+=+++.+ +|+||+.+= -|..++|.
T Consensus 193 ----------------------~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 193 ----------------------RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp ----------------------TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred ----------------------CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence 589999999999998877654 233445566644 799999995 57777763
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.36 E-value=0.0001 Score=62.91 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=58.0
Q ss_pred ccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------CccccceeEEecCCC
Q 046107 11 RFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------GLYFANGVALSKHGD 81 (224)
Q Consensus 11 ~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------~~~~pngia~~~dg~ 81 (224)
..|+++ +.+|| .+|++.+. |.+. ..+.....|-.+|.++.+...-.. ....|+.++++|||+
T Consensus 47 ~~P~~~-~spDg~~lyva~~~--~~R~------~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTV--YSRI------ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK 117 (352)
T ss_pred CCCcee-ECCCCCEEEEEecc--cccc------ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC
Confidence 367776 88887 69999874 2111 123446789999988765543222 245677999999999
Q ss_pred EEEEEeCC-CCeEEEEEccC
Q 046107 82 FVVVCESW-KFRCIKHWLKL 100 (224)
Q Consensus 82 ~Lyv~~~~-~~~I~~~~~~~ 100 (224)
+|||++.. .+.|.++|+..
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred EEEEecCCCCCEEEEEECCC
Confidence 99999954 89999999864
No 38
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.30 E-value=2.7e-05 Score=74.05 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=70.5
Q ss_pred eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC----------eEEEEecCccccceeE
Q 046107 6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK----------QVSIVLEGLYFANGVA 75 (224)
Q Consensus 6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g----------~~~~~~~~~~~pngia 75 (224)
.+..+.+|.+|+++++|.+||+|...-. .-..+|.|--+-..+. ..+...-.+.+|..+|
T Consensus 470 ~dA~L~~PkGIa~dk~g~lYfaD~t~IR----------~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~La 539 (1899)
T KOG4659|consen 470 QDAQLIFPKGIAFDKMGNLYFADGTRIR----------VIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLA 539 (1899)
T ss_pred ccceeccCCceeEccCCcEEEecccEEE----------EeccCceEEEeccCCCCccCccccccccchhheeeeccccee
Confidence 4567899999999999999999965110 0011222211111100 0011112468899999
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-----C---------------CCCCCceEECCCCCEEEEEecC
Q 046107 76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-----L---------------PGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-----~---------------~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++|-.+.|||-|. +-|++++.+.. +.+.... . --.+..|++..+|.+||+....
T Consensus 540 V~Pmdnsl~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 540 VDPMDNSLLVLDT--NVVLRITVVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG 613 (1899)
T ss_pred ecCCCCeEEEeec--ceEEEEccCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc
Confidence 9995566999985 57777776531 1111100 0 0157999999999999999887
No 39
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.18 E-value=3.2e-06 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.473 Sum_probs=24.9
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKH 96 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~ 96 (224)
+..|+||+++++|+ |||+|+..++|.+|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999998885 99999999999876
No 40
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.17 E-value=9.5e-05 Score=62.85 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=52.8
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-------------eEEEEecCccccceeEE
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-------------QVSIVLEGLYFANGVAL 76 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-------------~~~~~~~~~~~pngia~ 76 (224)
...-..|++++||.||++.-... ......+ .....|.|+|+++++. ..+.++.++..|.+++|
T Consensus 113 ~H~g~~l~fgpDG~LYvs~G~~~--~~~~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~ 188 (331)
T PF07995_consen 113 NHNGGGLAFGPDGKLYVSVGDGG--NDDNAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAF 188 (331)
T ss_dssp SS-EEEEEE-TTSEEEEEEB-TT--TGGGGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred CCCCccccCCCCCcEEEEeCCCC--Ccccccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence 44556799999999999964411 1001111 1245789999998732 24567889999999999
Q ss_pred ecCCCEEEEEeCCC---CeEEEEEc
Q 046107 77 SKHGDFVVVCESWK---FRCIKHWL 98 (224)
Q Consensus 77 ~~dg~~Lyv~~~~~---~~I~~~~~ 98 (224)
+|....||+++... .+|.++..
T Consensus 189 d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 189 DPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp ETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ECCCCcEEEEccCCCCCcEEEEecc
Confidence 99833599999543 45666653
No 41
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00038 Score=61.63 Aligned_cols=78 Identities=10% Similarity=-0.048 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.+|..+++.+.+..........+|+|||+.|+++... ...|+.++++++. .+.+.. ........++.+|
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~-~~~~~~~p~wSpD 316 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITR-HRAIDTEPSWHPD 316 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECcc-CCCCccceEECCC
Confidence 457999998777665554322233468999999988776433 3469999987532 222221 1234456788899
Q ss_pred CCEE
Q 046107 126 GSFW 129 (224)
Q Consensus 126 G~l~ 129 (224)
|+..
T Consensus 317 G~~I 320 (448)
T PRK04792 317 GKSL 320 (448)
T ss_pred CCEE
Confidence 8743
No 42
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.00043 Score=60.96 Aligned_cols=76 Identities=20% Similarity=0.129 Sum_probs=49.2
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.++..+++.+.+..........+|+|||+.|+++... ...|+.++++++. .+.+. ...+.....++.+|
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt-~~~~~~~~~~~spD 300 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLT-DSPAIDTSPSYSPD 300 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEcc-CCCCccCceeEcCC
Confidence 467999998877766554333333478999999988766543 3569999987532 22232 12233455788888
Q ss_pred CC
Q 046107 126 GS 127 (224)
Q Consensus 126 G~ 127 (224)
|+
T Consensus 301 G~ 302 (435)
T PRK05137 301 GS 302 (435)
T ss_pred CC
Confidence 87
No 43
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.12 E-value=0.00019 Score=58.49 Aligned_cols=138 Identities=9% Similarity=0.098 Sum_probs=81.5
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeeccC-CCCCCceEECC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIENL-PGGPDNINLAP 124 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~-~~~p~~i~~d~ 124 (224)
..+..+.+|+++-+...-.+-....+||+ .||+.||++|. +.+|+.+++++-+ .+..+|-..+. -...+-+.+-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 46788899987433222222334566888 46777999995 6899999987521 12222221111 1233445553
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeC--------CCCCc-
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFND--------PNAKN- 194 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~--------~~g~~- 194 (224)
+|.+|.-.+.. ..|++|||+ |+++..+.. .....
T Consensus 184 ~G~IyANVW~t------------------------------------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 184 NGKIYANVWQT------------------------------------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp TTEEEEEETTS------------------------------------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred cCEEEEEeCCC------------------------------------CeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 79999998887 689999986 999887732 01110
Q ss_pred --ccceeEEEEE--CCEEEEEeCCCCeEEEeeCC
Q 046107 195 --ISFVTSALEF--QGNLYLASINSNFIGKLPLK 224 (224)
Q Consensus 195 --~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~~ 224 (224)
..-...++.+ .+++|||.-.-+++.+++|+
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 1224455643 69999999999999998863
No 44
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00092 Score=58.86 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...|+.++.++|+.+.+.........++|+|||+.|+++... ...|+.++++++. .+.+.. ........++.+|
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~-~~~~~~~~~wSPD 297 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTD-GRSNNTEPTWFPD 297 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccC-CCCCcCceEECCC
Confidence 446788887767666554332333468999999999876533 3469999987532 233322 2234467788999
Q ss_pred CCEE
Q 046107 126 GSFW 129 (224)
Q Consensus 126 G~l~ 129 (224)
|+..
T Consensus 298 G~~I 301 (429)
T PRK03629 298 SQNL 301 (429)
T ss_pred CCEE
Confidence 9833
No 45
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.07 E-value=6.2e-05 Score=62.39 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=71.5
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~ 91 (224)
..|++|+....--|||--++.=..++| .+....|-+. +|..++ +.+.+++.+|.+..|.. |+ ||++|+.++
T Consensus 153 HLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~--evl~~GLsmPhSPRWhd-gr-LwvldsgtG 223 (335)
T TIGR03032 153 HLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSG--EVVASGLSMPHSPRWYQ-GK-LWLLNSGRG 223 (335)
T ss_pred eecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCC--CEEEcCccCCcCCcEeC-Ce-EEEEECCCC
Confidence 468999864335788864421111222 2222334333 454444 55789999999999984 54 999999999
Q ss_pred eEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107 92 RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK 134 (224)
Q Consensus 92 ~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~ 134 (224)
+|.+++++. |..++.. ..++.|.|+++. |++.+....
T Consensus 224 ev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 224 ELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEec
Confidence 999999873 2344444 478899999998 776554443
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.06 E-value=0.0014 Score=52.05 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=91.9
Q ss_pred ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc-cceeEEecCC
Q 046107 2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF-ANGVALSKHG 80 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~-pngia~~~dg 80 (224)
++++.+.. ...+.+.+.++|++.++-. .+|.+..++.++++.......... ...+.+.+++
T Consensus 2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~~-----------------~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 2 RRTLKGHT-GGVTCVAFSPDGKLLATGS-----------------GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63 (289)
T ss_pred chHhcccC-CCEEEEEEcCCCCEEEEee-----------------cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC
Confidence 34444332 4567888988887666532 256676666654433333333333 3589999998
Q ss_pred CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107 81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI 160 (224)
Q Consensus 81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 160 (224)
+.|+++. ..+.|..+++.... ....+. ........+.+.++++++++....
T Consensus 64 ~~l~~~~-~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~------------------------- 114 (289)
T cd00200 64 TYLASGS-SDKTIRLWDLETGE--CVRTLT-GHTSYVSSVAFSPDGRILSSSSRD------------------------- 114 (289)
T ss_pred CEEEEEc-CCCeEEEEEcCccc--ceEEEe-ccCCcEEEEEEcCCCCEEEEecCC-------------------------
Confidence 7555554 57899999986421 122222 122356788898888887776634
Q ss_pred HhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEEC-CEEEEEeCCCCeEEEeeC
Q 046107 161 NQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQ-GNLYLASINSNFIGKLPL 223 (224)
Q Consensus 161 ~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~-g~lyv~~~~~~~i~~~~~ 223 (224)
+.|..++.. ++....+....+ .++.+.... +.++++....+.|.++++
T Consensus 115 -----------~~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 115 -----------KTIKVWDVETGKCLTTLRGHTD----WVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -----------CeEEEEECCCcEEEEEeccCCC----cEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 456666654 565555542221 344444433 444444444566666654
No 47
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0013 Score=57.78 Aligned_cols=76 Identities=14% Similarity=0.021 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.+|.++++.+.+..........+|+|||+.|+++... ...|+.++.+++. .+.+.. ..+......+.+|
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~-~~~~~~~~~wSpD 294 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQ-SSGIDTEPFFSPD 294 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCC-CCCCCcCeEEcCC
Confidence 356899998777666554333334478999999988775433 3468888876532 222221 1223345778999
Q ss_pred CC
Q 046107 126 GS 127 (224)
Q Consensus 126 G~ 127 (224)
|+
T Consensus 295 G~ 296 (427)
T PRK02889 295 GR 296 (427)
T ss_pred CC
Confidence 97
No 48
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0011 Score=58.40 Aligned_cols=79 Identities=10% Similarity=0.006 Sum_probs=50.8
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.+|.++++.+.+..........+++|||++|+++... ...|++++++++. .+.+.. ..+.-...++.+|
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~-~~~~~~~~~~Spd 344 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISF-GGGRYSTPVWSPR 344 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeec-CCCcccCeEECCC
Confidence 456899998777776665444445578999999988666532 3579999987632 222221 1223345778899
Q ss_pred CCEEE
Q 046107 126 GSFWI 130 (224)
Q Consensus 126 G~l~v 130 (224)
|+..+
T Consensus 345 G~~ia 349 (435)
T PRK05137 345 GDLIA 349 (435)
T ss_pred CCEEE
Confidence 87443
No 49
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0017 Score=56.92 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.++.++++.+.+..........+|+|||+.|+++... ...|+.++++++. .+.+. ...+......+.+|
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt-~~~~~~~~~~~spD 297 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVT-NHPAIDTEPFWGKD 297 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcc-cCCCCcCCeEECCC
Confidence 457899998877766554322233468999999988766533 3479999987632 22222 12223445678888
Q ss_pred CC-EEEE
Q 046107 126 GS-FWIS 131 (224)
Q Consensus 126 G~-l~va 131 (224)
|+ ++++
T Consensus 298 g~~i~f~ 304 (430)
T PRK00178 298 GRTLYFT 304 (430)
T ss_pred CCEEEEE
Confidence 87 4444
No 50
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0017 Score=57.51 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.+|.++++.+.+..........+|+|||++|+++.. ....|++++++++. .+.+. .........++.+|
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt-~~g~~~~~~~~SpD 360 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLT-FEGEQNLGGSITPD 360 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEe-cCCCCCcCeeECCC
Confidence 34699999887777766544445567899999998877653 34579988887532 22221 11122345688999
Q ss_pred CCEEE
Q 046107 126 GSFWI 130 (224)
Q Consensus 126 G~l~v 130 (224)
|+..+
T Consensus 361 G~~l~ 365 (448)
T PRK04792 361 GRSMI 365 (448)
T ss_pred CCEEE
Confidence 97433
No 51
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0014 Score=57.64 Aligned_cols=79 Identities=15% Similarity=0.016 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...|++++.++++.+.+.........++|+|||+.|+++... ...|+.++++++. .+.+.. ..+.....++.+|
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~-~~~~~~~~~~spD 302 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTN-HFGIDTEPTWAPD 302 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECcc-CCCCccceEECCC
Confidence 456888898767665554322223368999999988766433 3479999987532 222221 1223356788999
Q ss_pred CCEEE
Q 046107 126 GSFWI 130 (224)
Q Consensus 126 G~l~v 130 (224)
|+..+
T Consensus 303 G~~l~ 307 (433)
T PRK04922 303 GKSIY 307 (433)
T ss_pred CCEEE
Confidence 97433
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.94 E-value=0.0014 Score=52.12 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=78.7
Q ss_pred CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.|.|..+|..+++....... ......++++++++.|+++.. .+.|..|+..... ....+. ........+++++++
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~ 231 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDG 231 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCC
Confidence 56777777654433322222 335679999999987777765 7889999986421 111111 122356889999998
Q ss_pred CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-
Q 046107 127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF- 204 (224)
Q Consensus 127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~- 204 (224)
.++++.... +.|..++.+ ++....+..... .++.+..+
T Consensus 232 ~~~~~~~~~------------------------------------~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~ 271 (289)
T cd00200 232 YLLASGSED------------------------------------GTIRVWDLRTGECVQTLSGHTN----SVTSLAWSP 271 (289)
T ss_pred cEEEEEcCC------------------------------------CcEEEEEcCCceeEEEccccCC----cEEEEEECC
Confidence 888776634 456666654 666666653322 35555554
Q ss_pred CCEEEEEeCCCCeEEEe
Q 046107 205 QGNLYLASINSNFIGKL 221 (224)
Q Consensus 205 ~g~lyv~~~~~~~i~~~ 221 (224)
+++++++......|..+
T Consensus 272 ~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 272 DGKRLASGSADGTIRIW 288 (289)
T ss_pred CCCEEEEecCCCeEEec
Confidence 34555555555666554
No 53
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0021 Score=56.44 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.+|..+|+.+.+...........|+|||+.|+++.. ....|+.++++++. .+.+.. .++.-....+.+|
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~-~~~~d~~p~~SPD 287 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITN-YPGIDVNGNFVED 287 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEccc-CCCccCccEECCC
Confidence 45799999988887777642222234689999998877654 34689999987632 223321 1222223468888
Q ss_pred CC-EEEEE
Q 046107 126 GS-FWISL 132 (224)
Q Consensus 126 G~-l~va~ 132 (224)
|+ +++..
T Consensus 288 G~~I~F~S 295 (419)
T PRK04043 288 DKRIVFVS 295 (419)
T ss_pred CCEEEEEE
Confidence 86 55543
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.0026 Score=55.98 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=51.3
Q ss_pred ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-C-CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-S-WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
..||.+|.++++.+.+..........+|+|||+.|+++. . ...+|++++++++. .+.+. .........++.+||
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt-~~~~~~~~~~~SpDG 342 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRIT-WEGSQNQDADVSSDG 342 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEee-cCCCCccCEEECCCC
Confidence 369999988777776655544556889999999885544 3 23478988887632 22222 122234567888999
Q ss_pred CEEEE
Q 046107 127 SFWIS 131 (224)
Q Consensus 127 ~l~va 131 (224)
+..+.
T Consensus 343 ~~Ia~ 347 (429)
T PRK03629 343 KFMVM 347 (429)
T ss_pred CEEEE
Confidence 75443
No 55
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.92 E-value=0.00085 Score=55.90 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=53.8
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---e----cCccccceeEEecC-C---
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---L----EGLYFANGVALSKH-G--- 80 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~----~~~~~pngia~~~d-g--- 80 (224)
+..++.+|++|+|||-|+... ... ... ......+|+.+|..++++... . ....+.+.++++.. +
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~-~~~---~~~-~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~ 76 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRP-NGL---QPP-KQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCD 76 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCH-SSS---STT-GHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-
T ss_pred cccEEEEcCCCCEEEEeCCCc-CCC---CCC-CCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCc
Confidence 346889999999999997621 000 000 013346899999987765322 1 23456678899872 2
Q ss_pred -CEEEEEeCCCCeEEEEEccC
Q 046107 81 -DFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 81 -~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.++|++|.....|.+|++..
T Consensus 77 ~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 77 DGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp SEEEEEEETTTCEEEEEETTT
T ss_pred ceEEEEeCCCcCcEEEEEccC
Confidence 58999999999999999874
No 56
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.92 E-value=0.0019 Score=54.82 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=72.5
Q ss_pred ccceeEEecCCCEEEEEeCCC------CeEEEEEccCCCcccc---eEee------cc--CCCCCCceEECCCCC-EEEE
Q 046107 70 FANGVALSKHGDFVVVCESWK------FRCIKHWLKLGDKRDR---EIFI------EN--LPGGPDNINLAPDGS-FWIS 131 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~------~~I~~~~~~~~~~~~~---~~~~------~~--~~~~p~~i~~d~dG~-l~va 131 (224)
-+.||++.++|. +||++-.. .+|++|+.+|...... ..+. .. .-....+|++.+||+ +|++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 456999977876 99999888 9999999886432221 1110 00 113578999999999 8998
Q ss_pred EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeCCCCC-----cccceeEEE-E
Q 046107 132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAK-----NISFVTSAL-E 203 (224)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~-----~~~~~t~~~-~ 203 (224)
....-.. + + +..........+++++|+. |+....+..+-.. .-..++.++ .
T Consensus 165 ~E~~l~~--d-----~--------------~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al 223 (326)
T PF13449_consen 165 MESPLKQ--D-----G--------------PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL 223 (326)
T ss_pred ECccccC--C-----C--------------cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE
Confidence 8765100 0 0 0000001112688999976 5555544332111 123556554 5
Q ss_pred ECCEEEEEeCC
Q 046107 204 FQGNLYLASIN 214 (224)
Q Consensus 204 ~~g~lyv~~~~ 214 (224)
.+++++|=+..
T Consensus 224 ~d~~lLvLER~ 234 (326)
T PF13449_consen 224 PDGRLLVLERD 234 (326)
T ss_pred CCCcEEEEEcc
Confidence 67888887766
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0019 Score=56.82 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--eEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF--RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...|+.+|..+++.+.+.........++|+|||+.|+++....+ .|+.++++++. .+.+. ...+.....++.+|
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt-~~~~~~~~~~wSpD 302 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLT-SGAGNNTEPSWSPD 302 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeec-cCCCCcCCEEECCC
Confidence 34688888776665554332223346899999998887654333 57888876532 22222 12233456788888
Q ss_pred CC
Q 046107 126 GS 127 (224)
Q Consensus 126 G~ 127 (224)
|+
T Consensus 303 G~ 304 (429)
T PRK01742 303 GQ 304 (429)
T ss_pred CC
Confidence 87
No 58
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.87 E-value=0.00013 Score=49.60 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=52.9
Q ss_pred CceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCccc
Q 046107 118 DNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNIS 196 (224)
Q Consensus 118 ~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~ 196 (224)
++++++++ |.+|+++...+....+ +...++..-|. |+++++||..+.+.++.+ + +.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~------~~~~~le~~~~-------------GRll~ydp~t~~~~vl~~--~--L~ 57 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRD------WVYDLLEGRPT-------------GRLLRYDPSTKETTVLLD--G--LY 57 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTG------HHHHHHHT----------------EEEEEEETTTTEEEEEEE--E--ES
T ss_pred CceeEecCCCEEEEEeCccccCccc------eeeeeecCCCC-------------cCEEEEECCCCeEEEehh--C--CC
Confidence 57899998 9999999987432211 12233333332 999999999887777644 2 34
Q ss_pred ceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107 197 FVTSALE--FQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 197 ~~t~~~~--~~g~lyv~~~~~~~i~~~~~ 223 (224)
.+..++. ++.-|+|++....||.|+-|
T Consensus 58 fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 58 FPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp SEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred ccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 5666654 35679999999999999865
No 59
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.86 E-value=0.0036 Score=54.44 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=47.4
Q ss_pred ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
..|+.++.++++.+.+.........++|+|||+.|+++... ...|+.+++.++. .+.+.. ..+.....++.+||
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~~~~~~~~~s~dg 289 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTN-GPGIDTEPSWSPDG 289 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCC-CCCCCCCEEECCCC
Confidence 56888888766655554333334568999999988876543 3469999887532 222221 11222355778888
Q ss_pred CEE
Q 046107 127 SFW 129 (224)
Q Consensus 127 ~l~ 129 (224)
+..
T Consensus 290 ~~l 292 (417)
T TIGR02800 290 KSI 292 (417)
T ss_pred CEE
Confidence 743
No 60
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.84 E-value=0.0016 Score=54.91 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=61.1
Q ss_pred CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---------CCe
Q 046107 22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW---------KFR 92 (224)
Q Consensus 22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~---------~~~ 92 (224)
.++||.|.. | ....++++.+|.+++++.=..+....++ ++++|||+++|++++. +.-
T Consensus 3 ~rvyV~D~~--~-----------~~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPV--F-----------FHMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-G--G-----------GGSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCc--c-----------ccccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 478999864 1 1124799999998787654444455555 7789999999999853 124
Q ss_pred EEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecCC
Q 046107 93 CIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKMN 136 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~~ 136 (224)
|..||.++... ..++.+.. ...++..+++..||+ +||.+..+.
T Consensus 69 v~~~D~~TL~~-~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 69 VEIWDTQTLSP-TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEEETTTTEE-EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred EEEEecCcCcc-cceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 66677654211 11222211 112678889988887 888888763
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.83 E-value=0.0011 Score=60.07 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC------------------------------------
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK------------------------------------ 90 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~------------------------------------ 90 (224)
-.+.+-.+|.++.++.....-...|.++++++||+++|++..++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 45677788877544432222334888999999999999996332
Q ss_pred ---CeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecCCc--hhhhhhccChhHHHHHhhchhhHHhhh
Q 046107 91 ---FRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKMNS--SAVETVHSSKNRKQLLEEHPELINQLM 164 (224)
Q Consensus 91 ---~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~ 164 (224)
++|..+|.....-...++... ..+..|.|++++|||+..++...-++ +++++-. +.+.++
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k----~k~~~~---------- 358 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK----LDDLFD---------- 358 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh----hhhhhh----------
Confidence 233333332100000111111 13458999999999985444443321 2222110 000000
Q ss_pred hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
+ +++++..+...... |. .......+.+|+.|.+-+-.+.|.+.++
T Consensus 359 -------~---~~~~~~~vvaevev--Gl--GPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 359 -------G---KIKPRDAVVAEPEL--GL--GPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred -------c---cCCccceEEEeecc--CC--CcceEEECCCCCEEEeEeecceeEEEeh
Confidence 1 13444444554433 32 2334444456789999999999988765
No 62
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.0033 Score=54.39 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=97.6
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEe--------CCCCeEEEEecCccccceeEEecCCC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYD--------PSSKQVSIVLEGLYFANGVALSKHGD 81 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~--------~~~g~~~~~~~~~~~pngia~~~dg~ 81 (224)
..+-..|+++|||.||++.-+.. ...... -.....|.+++++ +.+...++...++..|.|++|+|..+
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~-~~~~aq---~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg 251 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNG-DPALAQ---DNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTG 251 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCC-Cccccc---CccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCC
Confidence 56677899999999999965420 000000 0112344455544 33334456677899999999999845
Q ss_pred EEEEEeCCCCeE------EEEEccCCCcccceEe------------------ecc------CCCCCCceEECCC------
Q 046107 82 FVVVCESWKFRC------IKHWLKLGDKRDREIF------------------IEN------LPGGPDNINLAPD------ 125 (224)
Q Consensus 82 ~Lyv~~~~~~~I------~~~~~~~~~~~~~~~~------------------~~~------~~~~p~~i~~d~d------ 125 (224)
.||+++.....+ -++.. |+..+-+-.. ... ..-.|-||++-..
T Consensus 252 ~Lw~~e~g~d~~~~~Deln~i~~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~ 330 (399)
T COG2133 252 ALWTTEHGPDALRGPDELNSIRP-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAY 330 (399)
T ss_pred cEEEEecCCCcccCccccccccc-CCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccc
Confidence 699999765332 11110 1111110000 000 0013577777632
Q ss_pred -CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc---EEEEEeCCCCCcccceeEE
Q 046107 126 -GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS---IIREFNDPNAKNISFVTSA 201 (224)
Q Consensus 126 -G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~---~~~~~~~~~g~~~~~~t~~ 201 (224)
|.++|+.+.. -.+.+.+++|+ ....+-..+.. ..+-.+
T Consensus 331 r~~lfV~~hgs------------------------------------w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV 372 (399)
T COG2133 331 RGDLFVGAHGS------------------------------------WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDV 372 (399)
T ss_pred cCcEEEEeecc------------------------------------eeEEEeccCCCcceEEEEEEecCCC--Ccccce
Confidence 5778877776 35778999987 33333221111 234443
Q ss_pred -EEECCEEEEEeCCCC-eEEEeeC
Q 046107 202 -LEFQGNLYLASINSN-FIGKLPL 223 (224)
Q Consensus 202 -~~~~g~lyv~~~~~~-~i~~~~~ 223 (224)
+..+|.||+++-.++ +|.|+..
T Consensus 373 ~v~~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 373 AVAPDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred EECCCCeEEEeecCCCCeEEEecC
Confidence 456899999998844 9999863
No 63
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.73 E-value=0.0039 Score=56.98 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~ 88 (224)
....+.++..|||.+.+|- .-+|.|-.||...|.+-...+ .-..-.++.|+..|+ ..++.+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG-----------------~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATG-----------------AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEec-----------------cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEee
Confidence 4556677778888777773 236777778876666654433 345567999999997 778888
Q ss_pred CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK 168 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 168 (224)
..+.|..+|+.- -...+.|....+.....+++|+.|.+.+|..-..
T Consensus 412 LDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~-------------------------------- 457 (893)
T KOG0291|consen 412 LDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS-------------------------------- 457 (893)
T ss_pred cCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeeccce--------------------------------
Confidence 999999999853 1234555433344567899999999888866552
Q ss_pred CceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEE
Q 046107 169 GAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGK 220 (224)
Q Consensus 169 ~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~ 220 (224)
-.|+..+-+ |+++..+....|. ++.++.. .+.+.++....+.|-+
T Consensus 458 ---F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 458 ---FEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ---EEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccccceEEE
Confidence 567777754 8888888766653 4444432 3444444444444433
No 64
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.0031 Score=55.53 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=66.7
Q ss_pred ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
..||.++.++++.+.+.........++++|||++|+++... ...|+.++++++ ..+.+... .......+.+||
T Consensus 316 ~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~--~~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG--SLDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC--CCCCCceECCCC
Confidence 46888887766666554333344578999999999887643 346889988653 23333221 123456899999
Q ss_pred CE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC
Q 046107 127 SF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA 192 (224)
Q Consensus 127 ~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g 192 (224)
+. +++..... ...++.++.+|.....+..+.|
T Consensus 391 ~~i~~~s~~~g----------------------------------~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 391 SMVLYATREGG----------------------------------RGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CEEEEEEecCC----------------------------------ceEEEEEECCCCceEEcccCCC
Confidence 83 33332221 1678999999987777755444
No 65
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.69 E-value=0.0068 Score=49.37 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=88.6
Q ss_pred cccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-E-ecCccccceeEEecCCCEEEEEeC
Q 046107 12 FANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-V-LEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 12 ~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~-~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
.+.+++.+++ +++|..... .+.|+.++.+ |++.. + ..+..-+.||++-.++. +.+++-
T Consensus 23 e~SGLTy~pd~~tLfaV~d~-----------------~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~E 83 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE-----------------PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEE 83 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT-----------------TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEET
T ss_pred CccccEEcCCCCeEEEEECC-----------------CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEc
Confidence 4789999986 567776532 5789999987 55433 2 35677789999998774 666776
Q ss_pred CCCeEEEEEccC--CCcccc--eEeeccCC----CCCCceEECCCC-CEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107 89 WKFRCIKHWLKL--GDKRDR--EIFIENLP----GGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL 159 (224)
Q Consensus 89 ~~~~I~~~~~~~--~~~~~~--~~~~~~~~----~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 159 (224)
..++++.++++. ...... +.+.-..+ ....|+++|+.+ ++|++-...
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~------------------------ 139 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK------------------------ 139 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS------------------------
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC------------------------
Confidence 678999998842 111111 11110111 236899999974 588775433
Q ss_pred HHhhhhcCCCceEEEEEECC--CCcEEEEEeC---C-CCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107 160 INQLMSTGKGAAAKVVKVSA--NGSIIREFND---P-NAKNISFVTSALEF--QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~~~--~G~~~~~~~~---~-~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~ 223 (224)
+ ..++.++- .+..+..... + ....+..++.+..+ .|.||+=|-.+.+|..++.
T Consensus 140 ---------P--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 140 ---------P--KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp ---------S--EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ---------C--hhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 1 45666664 2222221111 1 12234456666655 5889999999999988874
No 66
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.68 E-value=0.0036 Score=52.17 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=93.7
Q ss_pred ccceEEecCC-c-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--Cccccc-eeEEecCCCEEEEEe
Q 046107 13 ANDVIEASDG-S-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--GLYFAN-GVALSKHGDFVVVCE 87 (224)
Q Consensus 13 ~n~v~~~~~G-~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--~~~~pn-gia~~~dg~~Lyv~~ 87 (224)
.+++++.+.. . +.|+. .|.-.++++|..+++...... ....-+ --+||+||++||.++
T Consensus 7 gH~~a~~p~~~~avafaR-----------------RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFAR-----------------RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEe-----------------CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEec
Confidence 3578888843 2 44443 234457889988776654432 122223 357899999999997
Q ss_pred C----CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhccChhH-HHHHhhchhhHH
Q 046107 88 S----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNR-KQLLEEHPELIN 161 (224)
Q Consensus 88 ~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~ 161 (224)
. ..+.|.+|+.... ......|.. ..-.|-.+.+.+|| +|.||+++- .+.|.. |..+ .++.
T Consensus 70 nd~~~g~G~IgVyd~~~~-~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI--------~Thpd~GR~kL-Nl~t--- 135 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG-YRRIGEFPS-HGIGPHELLLMPDGETLVVANGGI--------ETHPDSGRAKL-NLDT--- 135 (305)
T ss_pred cccCCCcEEEEEEECcCC-cEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCC--------ccCcccCceec-Chhh---
Confidence 4 4688999998731 222222321 11269999999999 688887764 233322 1111 1111
Q ss_pred hhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCC-cccceeEEEEECCEEEEEe
Q 046107 162 QLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAK-NISFVTSALEFQGNLYLAS 212 (224)
Q Consensus 162 ~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~-~~~~~t~~~~~~g~lyv~~ 212 (224)
+...+..+| .+|+++.....|... .++--..++..+|.++++.
T Consensus 136 --------M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 136 --------MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred --------cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 113566674 579988886654322 2222233444568888775
No 67
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.67 E-value=0.00021 Score=41.20 Aligned_cols=37 Identities=19% Similarity=-0.069 Sum_probs=33.4
Q ss_pred EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 64 VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 64 ~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
+..+...|+||++++.++.||++|...+.|.+.+.+|
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3457889999999999999999999999999999876
No 68
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.66 E-value=0.0051 Score=54.13 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
..||.++.++++.+.+..........+++|||++|+++.... ..|+.++++++ ..+.+... .......+.+||
T Consensus 308 ~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~--~~~~~p~~spdg 382 (427)
T PRK02889 308 PQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT--TRDESPSFAPNG 382 (427)
T ss_pred cEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC--CCccCceECCCC
Confidence 468888876565555432223334678999999887665433 47899988653 22333221 223567899999
Q ss_pred CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107 127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK 193 (224)
Q Consensus 127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~ 193 (224)
+..+....... . ..++.++.+|+....+..+.|.
T Consensus 383 ~~l~~~~~~~g-------------------------------~--~~l~~~~~~g~~~~~l~~~~g~ 416 (427)
T PRK02889 383 RYILYATQQGG-------------------------------R--SVLAAVSSDGRIKQRLSVQGGD 416 (427)
T ss_pred CEEEEEEecCC-------------------------------C--EEEEEEECCCCceEEeecCCCC
Confidence 84333332210 0 5688888899887777665553
No 69
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.65 E-value=0.0015 Score=57.61 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=51.9
Q ss_pred eEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCccc----ceEeeccCCCCCCceEECCCC-------CE
Q 046107 60 QVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD----REIFIENLPGGPDNINLAPDG-------SF 128 (224)
Q Consensus 60 ~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~----~~~~~~~~~~~p~~i~~d~dG-------~l 128 (224)
+++.+++++..|++|++.|||+ |||++...++|++++..+..... ..+......+.+-||+++|+- .|
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 4567789999999999999995 99999878999999875421111 111111113467899998764 58
Q ss_pred EEEEec
Q 046107 129 WISLIK 134 (224)
Q Consensus 129 ~va~~~ 134 (224)
|++-..
T Consensus 100 Yvsyt~ 105 (454)
T TIGR03606 100 YISYTY 105 (454)
T ss_pred EEEEec
Confidence 988644
No 70
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.65 E-value=0.0074 Score=50.29 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=63.7
Q ss_pred eEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE---EEecCccccceeEEecCCCEEEEEeCCC-
Q 046107 16 VIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS---IVLEGLYFANGVALSKHGDFVVVCESWK- 90 (224)
Q Consensus 16 v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~---~~~~~~~~pngia~~~dg~~Lyv~~~~~- 90 (224)
.++.+||+ ||.|... + ....|.|-++|.. .... .+.+..-.|+-|.+.|||+.|.|++..=
T Consensus 56 g~fs~dG~~LytTEnd--~-----------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 56 GVFSPDGRLLYTTEND--Y-----------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEEcCCCCEEEEeccc--c-----------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 44577886 5555432 1 3467889999987 3333 3456777899999999998899998431
Q ss_pred ----------------CeEEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecC
Q 046107 91 ----------------FRCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 91 ----------------~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~ 135 (224)
-.+..++...+.+-+.-.+..... -+...++++++|.+|++..+.
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 122223222111100000000000 157899999999999998775
No 71
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.0015 Score=56.45 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=68.3
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhh-----ccCCCCc-eEEEEeCCCCeEE-----EEecCccccceeEEec
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDL-----VEGEPHG-QLLRYDPSSKQVS-----IVLEGLYFANGVALSK 78 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~-----~~~~~~g-~l~~~~~~~g~~~-----~~~~~~~~pngia~~~ 78 (224)
+..|.+++..++|.+.++.... .++..+ ......+ .+.....+.|... .++++...+.++++..
T Consensus 66 Le~p~~~~~lP~G~~~v~er~~-----G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~~ 140 (399)
T COG2133 66 LEHPWGLARLPDGVLLVTERPT-----GRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEPG 140 (399)
T ss_pred ccCchhheecCCceEEEEccCC-----ccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEeec
Confidence 7788999999999666665320 011111 0011111 1111111122211 2356677788888875
Q ss_pred CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC----CCCceEECCCCCEEEEEecCC
Q 046107 79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG----GPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d~dG~l~va~~~~~ 136 (224)
++ +|+++. -.+.+++....++.+.++++...|+ .-..|++++||.||++.+..+
T Consensus 141 ~~--~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~ 198 (399)
T COG2133 141 GG--LYVANR--VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNG 198 (399)
T ss_pred CC--ceEEEE--EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCC
Confidence 43 788864 3566676222355566666655553 347899999999999998873
No 72
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.012 Score=51.83 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=46.1
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEE--EEccCCCcccceEeeccCCCCCCceEEC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIK--HWLKLGDKRDREIFIENLPGGPDNINLA 123 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~--~~~~~~~~~~~~~~~~~~~~~p~~i~~d 123 (224)
...||.++.++|+.+.+..........+|+|||++|.++... ...|+. ++++.+..+..+.+.....+.....++.
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 457899998877766665433333468999999888766532 235555 4444321223333332212233456888
Q ss_pred CCCC
Q 046107 124 PDGS 127 (224)
Q Consensus 124 ~dG~ 127 (224)
+||+
T Consensus 290 PDG~ 293 (428)
T PRK01029 290 PDGT 293 (428)
T ss_pred CCCC
Confidence 9987
No 73
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.60 E-value=0.0012 Score=59.55 Aligned_cols=124 Identities=16% Similarity=0.264 Sum_probs=74.2
Q ss_pred cccccccceEEec-CCcEEEEeCCCC-CCc-chhhhhhccCCCCceEEEEeCCCC-------eEEEEec-----------
Q 046107 8 HLIRFANDVIEAS-DGSLYITVSSTK-FAP-KAYYLDLVEGEPHGQLLRYDPSSK-------QVSIVLE----------- 66 (224)
Q Consensus 8 ~~~~~~n~v~~~~-~G~ly~t~~~~~-~~~-~~~~~~~~~~~~~g~l~~~~~~~g-------~~~~~~~----------- 66 (224)
.+|.-|++|++++ +|.|||+-+... ... .............|.||+++++.+ +++.+..
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4689999999998 589999876522 000 000111223456899999998755 4544321
Q ss_pred -------CccccceeEEecCCCEEEEEeCC-CCe-----------EEEEEc--------cCCCcccceEeeccC-CCCCC
Q 046107 67 -------GLYFANGVALSKHGDFVVVCESW-KFR-----------CIKHWL--------KLGDKRDREIFIENL-PGGPD 118 (224)
Q Consensus 67 -------~~~~pngia~~~dg~~Lyv~~~~-~~~-----------I~~~~~--------~~~~~~~~~~~~~~~-~~~p~ 118 (224)
.+..|.+|+++++|+ |||++-. ... ++.+.. .+...+..+.|.... .....
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 256788999999998 8877733 222 222211 111223344444322 23689
Q ss_pred ceEECCCCC-EEEEE
Q 046107 119 NINLAPDGS-FWISL 132 (224)
Q Consensus 119 ~i~~d~dG~-l~va~ 132 (224)
|+++.+||+ ||+..
T Consensus 506 G~~fspDg~tlFvni 520 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNI 520 (524)
T ss_pred cceECCCCCEEEEEE
Confidence 999999997 66643
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.58 E-value=0.0064 Score=53.35 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=65.9
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||+++.++++.+.+..........+++|||+.|+++.... ..|+.++++++ ..+.+... ..-....+.+|
T Consensus 310 ~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spd 384 (430)
T PRK00178 310 KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPN 384 (430)
T ss_pred CceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCC
Confidence 4468888877677665543333334578999999998877433 36888888753 23333321 12234578999
Q ss_pred CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC
Q 046107 126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA 192 (224)
Q Consensus 126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g 192 (224)
|+..+-..... .. ..++.++.+|+....+..+.|
T Consensus 385 g~~i~~~~~~~-------------------------------g~--~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 385 GTMLIYATRQQ-------------------------------GR--GVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred CCEEEEEEecC-------------------------------Cc--eEEEEEECCCCceEECcCCCC
Confidence 98444333221 01 578888888887766655444
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.58 E-value=0.013 Score=51.03 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=50.2
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
...||.++.++++.+.+..........+++|||++|+++.. ....|+.+++++.. .+.+. .........++.++
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~-~~~~~~~~~~~spd 332 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLT-FRGGYNASPSWSPD 332 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEee-cCCCCccCeEECCC
Confidence 34688889876665555433333346789999998866543 33479999887532 22222 12234567789999
Q ss_pred CCEEEEEe
Q 046107 126 GSFWISLI 133 (224)
Q Consensus 126 G~l~va~~ 133 (224)
|+.++...
T Consensus 333 g~~i~~~~ 340 (417)
T TIGR02800 333 GDLIAFVH 340 (417)
T ss_pred CCEEEEEE
Confidence 98554433
No 76
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.58 E-value=0.001 Score=60.27 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=64.7
Q ss_pred ceEEEEeCCC-----CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC------CcccceEee-cc-CCC
Q 046107 49 GQLLRYDPSS-----KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG------DKRDREIFI-EN-LPG 115 (224)
Q Consensus 49 g~l~~~~~~~-----g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~~~~-~~-~~~ 115 (224)
++|-.+|..+ .++.....-.+.|+|++++|||+++|++...++.|..++.+.. ++....++. +. ..-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888765 2344556678999999999999999999999999999998631 111111222 11 223
Q ss_pred CCCceEECCCCCEEEEEecCC
Q 046107 116 GPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 116 ~p~~i~~d~dG~l~va~~~~~ 136 (224)
.|-..++|.+|+.|++-+-.+
T Consensus 376 GPLHTaFDg~G~aytslf~ds 396 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDS 396 (635)
T ss_pred CcceEEECCCCCEEEeEeecc
Confidence 799999999999999987763
No 77
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.58 E-value=0.019 Score=45.66 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=38.9
Q ss_pred EEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107 17 IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKH 96 (224)
Q Consensus 17 ~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~ 96 (224)
++..+|.+|+++ ..+.|+.+|..+|+.....+............+ +.+||... .++|+.+
T Consensus 32 ~~~~~~~v~~~~------------------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~v~v~~~-~~~l~~~ 91 (238)
T PF13360_consen 32 AVPDGGRVYVAS------------------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG-GRVYVGTS-DGSLYAL 91 (238)
T ss_dssp EEEETTEEEEEE------------------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET-TEEEEEET-TSEEEEE
T ss_pred EEEeCCEEEEEc------------------CCCEEEEEECCCCCEEEEeeccccccceeeecc-cccccccc-eeeeEec
Confidence 344577788874 357899999877876543332121122222333 45888874 4599999
Q ss_pred EccC
Q 046107 97 WLKL 100 (224)
Q Consensus 97 ~~~~ 100 (224)
+...
T Consensus 92 d~~t 95 (238)
T PF13360_consen 92 DAKT 95 (238)
T ss_dssp ETTT
T ss_pred ccCC
Confidence 9653
No 78
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.016 Score=47.22 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=65.1
Q ss_pred ccceeEEecCC-CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107 70 FANGVALSKHG-DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN 148 (224)
Q Consensus 70 ~pngia~~~dg-~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~ 148 (224)
.-+-++|+|.. +.++++.+....|-.+++++-++ ...++ +..++.+-+++.+||.+....+..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgkd------------- 213 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGKD------------- 213 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCCC-------------
Confidence 34456677764 33344445555555555544111 11222 123466778888888887775544
Q ss_pred HHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 149 RKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
+.++..| .+|+-+..+.. . ..+..+++..++.|+.-.-+..|-+.++
T Consensus 214 -----------------------g~~~LwdL~~~k~lysl~a--~---~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 214 -----------------------GEAMLWDLNEGKNLYSLEA--F---DIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred -----------------------ceEEEEEccCCceeEeccC--C---CeEeeEEecCCceeEeeccCCceEEEec
Confidence 4555555 35666555532 1 2466677888999999888888777664
No 79
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.0062 Score=53.51 Aligned_cols=122 Identities=13% Similarity=-0.027 Sum_probs=76.4
Q ss_pred eEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC----
Q 046107 16 VIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK---- 90 (224)
Q Consensus 16 v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~---- 90 (224)
..+.||| .|||+... .....||+++.++++.+.+...... + .+++|||+.|.++....
T Consensus 282 p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 282 GNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCccc
Confidence 3566777 47776532 1334799999987877665432211 2 58999999885555332
Q ss_pred ----CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107 91 ----FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS 165 (224)
Q Consensus 91 ----~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 165 (224)
..|+.++++++ +.+.+... +.-....+.|||+ ++++.....
T Consensus 345 ~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~----------------------------- 390 (419)
T PRK04043 345 GKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN----------------------------- 390 (419)
T ss_pred CCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccCC-----------------------------
Confidence 58999998763 23333321 2223478899997 444433221
Q ss_pred cCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107 166 TGKGAAAKVVKVSANGSIIREFNDPNAK 193 (224)
Q Consensus 166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~ 193 (224)
...+..++.+|.....+....|.
T Consensus 391 -----~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 391 -----QSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred -----cEEEEEEecCCCeeEEeecCCCc
Confidence 16789999999887777665554
No 80
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.51 E-value=0.011 Score=51.93 Aligned_cols=78 Identities=21% Similarity=0.123 Sum_probs=46.6
Q ss_pred ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
..|+.+|.++.....+.........++|+|||+.|+++.. ....|+.+++.++ ..+.+. ...+.-...++.|||
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~-~~~g~~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVA-SFRGHNGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEe-cCCCccCceeECCCC
Confidence 5677777764333333333333467999999998866543 2357999998652 223332 223333467888998
Q ss_pred CEEE
Q 046107 127 SFWI 130 (224)
Q Consensus 127 ~l~v 130 (224)
+..+
T Consensus 260 ~~La 263 (429)
T PRK01742 260 SRLA 263 (429)
T ss_pred CEEE
Confidence 7433
No 81
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.50 E-value=0.0011 Score=58.83 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=50.0
Q ss_pred ccccceeEEecCCCEEEEEeCCCC----------------eEEEEEccCC----CcccceEeecc-CC------------
Q 046107 68 LYFANGVALSKHGDFVVVCESWKF----------------RCIKHWLKLG----DKRDREIFIEN-LP------------ 114 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~----------------~I~~~~~~~~----~~~~~~~~~~~-~~------------ 114 (224)
...|.+|++.|....+|++.++.. +|++|-+.+. ...+.++|+.. .+
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 455889999998878999987654 7899887631 22345666531 01
Q ss_pred ----CCCCceEECCCCCEEEEEecCC
Q 046107 115 ----GGPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 115 ----~~p~~i~~d~dG~l~va~~~~~ 136 (224)
..||||++|+.|+||++.-...
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccCCCceEECCCCCEEEEecCCC
Confidence 1399999999999999986653
No 82
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.50 E-value=0.0013 Score=59.16 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=49.9
Q ss_pred cCccccceeEEecCCCEEEEEeCCCC-------------------eEEEEEccCC----CcccceEeecc-C--------
Q 046107 66 EGLYFANGVALSKHGDFVVVCESWKF-------------------RCIKHWLKLG----DKRDREIFIEN-L-------- 113 (224)
Q Consensus 66 ~~~~~pngia~~~dg~~Lyv~~~~~~-------------------~I~~~~~~~~----~~~~~~~~~~~-~-------- 113 (224)
+.+..|.+|.++|....+|++.+... +|+++.+++. ...+.++++.. .
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 34667889999997778999986655 8999998743 11123333321 1
Q ss_pred --------CCCCCceEECCCCCEEEEEecC
Q 046107 114 --------PGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 114 --------~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...||||++|++|+||++.-..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 1379999999999999997655
No 83
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.014 Score=51.83 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=77.8
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSS 146 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~ 146 (224)
.....+.++|+||++ ..++-+....|..+++... ....+++. +-......+++.++|++.++....
T Consensus 202 h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~-~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D----------- 267 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD-GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD----------- 267 (456)
T ss_pred cccceeeeEECCCCc-EEEEecCCceEEEeeccCC-CeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----------
Confidence 345567999999997 7777788899999998321 11234443 223456899999999988888777
Q ss_pred hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107 147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~ 223 (224)
+.|...|.. |+.++.+....+ .++.+... +++++++......|.+.++
T Consensus 268 -------------------------~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 268 -------------------------GTVRIWDVRTGECVRKLKGHSD----GISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred -------------------------CcEEEEeccCCeEEEeeeccCC----ceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 456666644 788888876654 35665543 5566655555777776654
No 84
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.015 Score=51.23 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=58.1
Q ss_pred ceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC--CCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 046107 15 DVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS--SKQVSIVLEGLYFANGVALSKHGDFVVVCESW-- 89 (224)
Q Consensus 15 ~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-- 89 (224)
..++.|||+ |+|+... .+...||+++.+ ++..+.+..........+++|||++|+++...
T Consensus 285 ~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g 349 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG 349 (428)
T ss_pred CeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence 467788885 6665321 123368887653 23344443333344578999999988766533
Q ss_pred CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107 90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~ 129 (224)
..+|+.++++++ +.+.+... .....+..+.+||+..
T Consensus 350 ~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 350 VRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHL 385 (428)
T ss_pred CcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEE
Confidence 357999998763 23333322 2345678899999733
No 85
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.017 Score=51.31 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=70.2
Q ss_pred ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeC-CCCe-EEEEecCccccceeEEecCCCEEEEE
Q 046107 9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP-SSKQ-VSIVLEGLYFANGVALSKHGDFVVVC 86 (224)
Q Consensus 9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~g~-~~~~~~~~~~pngia~~~dg~~Lyv~ 86 (224)
.-...+++++.++|.+.++-. .+..|..+|. +.+. ++.+.....+.+.++|+|+|+ ++++
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s-----------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~S 263 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGS-----------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVS 263 (456)
T ss_pred cccceeeeEECCCCcEEEEec-----------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEE
Confidence 345567888888888666532 2444555554 3333 344444556668999999995 8888
Q ss_pred eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
-+..+.|..+++.+++ ..+.+. .....-.++++.++|++.++....
T Consensus 264 gs~D~tvriWd~~~~~--~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTGE--CVRKLK-GHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ecCCCcEEEEeccCCe--EEEeee-ccCCceEEEEECCCCCEEEEcCCC
Confidence 8899999999987521 123332 222345788899999988887655
No 86
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.016 Score=47.76 Aligned_cols=150 Identities=14% Similarity=0.153 Sum_probs=88.8
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE----E-ecC----ccccceeEEecCC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI----V-LEG----LYFANGVALSKHG 80 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~----~-~~~----~~~pngia~~~dg 80 (224)
+.-|+.|+...+|.+.+++.. ...-.++++++++..... + .+. =++-.|+|++|..
T Consensus 128 ~~DpE~Ieyig~n~fvi~dER---------------~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~ 192 (316)
T COG3204 128 FSDPETIEYIGGNQFVIVDER---------------DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD 192 (316)
T ss_pred cCChhHeEEecCCEEEEEehh---------------cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC
Confidence 666778888777777777743 123345667776332111 1 111 2334599999988
Q ss_pred CEEEEEe-CCCCeEEEEEccCCCcc---------cceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhH
Q 046107 81 DFVVVCE-SWKFRCIKHWLKLGDKR---------DREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNR 149 (224)
Q Consensus 81 ~~Lyv~~-~~~~~I~~~~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~ 149 (224)
+.|||+- ...-+|+.++.....+. ..+.+. .-..|+.+|+. |+++|-....
T Consensus 193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~----~DvSgl~~~~~~~~LLVLS~ES-------------- 254 (316)
T COG3204 193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV----LDVSGLEFNAITNSLLVLSDES-------------- 254 (316)
T ss_pred ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe----eccccceecCCCCcEEEEecCC--------------
Confidence 8888886 55567777763211110 001111 12457777753 6677765555
Q ss_pred HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC-----cccceeEEE-EECCEEEEEeCC
Q 046107 150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK-----NISFVTSAL-EFQGNLYLASIN 214 (224)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~-----~~~~~t~~~-~~~g~lyv~~~~ 214 (224)
..++++|-+|.++..+...+|. .++..-+++ +++|+||+.|-.
T Consensus 255 ----------------------r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 255 ----------------------RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ----------------------ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 5899999999987776554442 223333444 567999999854
No 87
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.46 E-value=0.021 Score=49.64 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=77.3
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC-CCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP-GGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~d 125 (224)
.|.++.+|..+|+... ......+..+++. ++.||+.+. .++|+.+++.+++ ..|... .. ......++ .+
T Consensus 265 ~g~l~ald~~tG~~~W-~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~ 335 (394)
T PRK11138 265 NGNLVALDLRSGQIVW-KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YN 335 (394)
T ss_pred CCeEEEEECCCCCEEE-eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-EC
Confidence 5789999988776432 2223333444543 446999874 5789999986432 234221 11 11122333 36
Q ss_pred CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107 126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF 204 (224)
Q Consensus 126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~ 204 (224)
|.+|+++.. +.++.+|+ +|+++..+....+. ..+..+..
T Consensus 336 g~l~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~ 375 (394)
T PRK11138 336 GYLVVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVA 375 (394)
T ss_pred CEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEE
Confidence 889988654 46788886 59988877653322 12233457
Q ss_pred CCEEEEEeCCCCeEEEeeCC
Q 046107 205 QGNLYLASINSNFIGKLPLK 224 (224)
Q Consensus 205 ~g~lyv~~~~~~~i~~~~~~ 224 (224)
+++||+++.. ..|..+++|
T Consensus 376 ~~~l~v~t~~-G~l~~~~~~ 394 (394)
T PRK11138 376 DDKLLIQARD-GTVYAITRP 394 (394)
T ss_pred CCEEEEEeCC-ceEEEEeCC
Confidence 8899999764 577777765
No 88
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.44 E-value=0.00034 Score=36.86 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.7
Q ss_pred cccccceEEecCCcEEEEeCC
Q 046107 10 IRFANDVIEASDGSLYITVSS 30 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~ 30 (224)
+..|++|+++++|+||++|..
T Consensus 1 f~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECC
T ss_pred CcCCcEEEEeCCCCEEEEECC
Confidence 568999999999999999954
No 89
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.41 E-value=0.0021 Score=57.21 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=81.3
Q ss_pred eccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-------eEEEEe-----cCcc---
Q 046107 6 LCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-------QVSIVL-----EGLY--- 69 (224)
Q Consensus 6 ~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-------~~~~~~-----~~~~--- 69 (224)
...+|.-|++|++.+ .|.+|++.+...- +..-..........|.|+||-+.++ +++.+. +...
T Consensus 412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~-r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~ 490 (616)
T COG3211 412 GATPMDRPEWIAVNPGTGEVYFTLTNNGK-RSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA 490 (616)
T ss_pred CCccccCccceeecCCcceEEEEeCCCCc-cccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc
Confidence 345788999999998 4789998765210 1111122334566889999998765 566553 1233
Q ss_pred ----------ccceeEEecCCCEEEEEeCCCC--------eEEEEEccCCCcccceEeeccCC-CCCCceEECCCCC-EE
Q 046107 70 ----------FANGVALSKHGDFVVVCESWKF--------RCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGS-FW 129 (224)
Q Consensus 70 ----------~pngia~~~dg~~Lyv~~~~~~--------~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~-l~ 129 (224)
.|.+|+++|.|+ |||+.-... .+......++..++.+.|..... ....|.++.+||+ +|
T Consensus 491 ~~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 491 SANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred ccCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence 389999999997 887763322 12222222344566666654332 3678999999985 88
Q ss_pred EEEecC
Q 046107 130 ISLIKM 135 (224)
Q Consensus 130 va~~~~ 135 (224)
|+....
T Consensus 570 V~vQHP 575 (616)
T COG3211 570 VNVQHP 575 (616)
T ss_pred EEecCC
Confidence 887554
No 90
>PTZ00421 coronin; Provisional
Probab=97.40 E-value=0.036 Score=49.75 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=43.0
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.....++|+|++..++++.+..+.|..|++.... ....+ .........+++.++|++.++....
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l-~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVI-KCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEE-cCCCCceEEEEEECCCCEEEEecCC
Confidence 4456899999864477777778899999986421 11122 1122345788999999988776655
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.36 E-value=0.014 Score=50.32 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=90.0
Q ss_pred cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCe
Q 046107 14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~ 92 (224)
...++.|||.|+.|- .++|.|-.||.+......-..+...| ..|+|+.+| +..++....++
T Consensus 351 ts~~fHpDgLifgtg-----------------t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~ 412 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTG-----------------TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGS 412 (506)
T ss_pred EEeeEcCCceEEecc-----------------CCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCe
Confidence 356677777777663 34666666665433221112334444 589999988 55666677788
Q ss_pred EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceE
Q 046107 93 CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAA 172 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (224)
|..||+.- +...+.+.-........+.+|.-|.+.+..+.. -
T Consensus 413 V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------------------------------------l 454 (506)
T KOG0289|consen 413 VKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------------------------------------L 454 (506)
T ss_pred EEEEEehh--hcccceeeccccccceeEEEcCCCCeEEeecce------------------------------------e
Confidence 99999863 223333321111235789999999988876444 5
Q ss_pred EEEEECCC---CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEe
Q 046107 173 KVVKVSAN---GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKL 221 (224)
Q Consensus 173 ~v~~~~~~---G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~ 221 (224)
.|+.+... ...+..+++..|. .+++.+...-.|+++-+.+++.++
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~----st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGL----STGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEEEecccccceeeehhhhcccc----cceeeecccceEEeeccchhheEE
Confidence 77777743 4445555554442 445445566677777777777654
No 92
>PTZ00420 coronin; Provisional
Probab=97.36 E-value=0.057 Score=49.22 Aligned_cols=63 Identities=5% Similarity=-0.034 Sum_probs=44.6
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...+.++|+|++..++++.+..+.|..|++.... ....+ ........++++++|+++++....
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i--~~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI--NMPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE--ecCCcEEEEEECCCCCEEEEEecC
Confidence 4457899999988777777778899999986422 11111 123356789999999998876655
No 93
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.31 E-value=0.0027 Score=50.71 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=66.0
Q ss_pred cccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
+--+|+++.+.+- .+|++|+. +|....|-++.-.+....+=..+|..+. .......|.|++++.+|+ |||+..
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~-L~Va~~ 230 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGN-LYVATF 230 (310)
T ss_pred ccCCccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCc-EEEEEe
Confidence 3457899998764 79999865 2433323222211111110001111100 112567899999999986 999999
Q ss_pred CCCeEEEEEccCCCcccceEeecc-CC-CCCCceEECCC--CCEEEEEecC
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIEN-LP-GGPDNINLAPD--GSFWISLIKM 135 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~d--G~l~va~~~~ 135 (224)
++++|+++++..++ .+.+. +| ......++... .-+|++....
T Consensus 231 ng~~V~~~dp~tGK-----~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGK-----ILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred cCcEEEEECCCCCc-----EEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 99999999997533 22211 22 24456666655 3477776544
No 94
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.29 E-value=0.035 Score=51.01 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=78.0
Q ss_pred eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCE
Q 046107 4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDF 82 (224)
Q Consensus 4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~ 82 (224)
+|..+.-....-|++|+.|.|.++-.. -.=.|+.++.++|+..-+..+..+| .+++++|+|+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~- 491 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS- 491 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-
Confidence 445555455567889999988887432 1225788888888877777888888 4899999998
Q ss_pred EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107 83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~ 135 (224)
+.++-++...|..+++-+. -++.+.+ ......-++++-|||. +-|+...+
T Consensus 492 ~LaS~SWDkTVRiW~if~s-~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSS-SGTVETL--EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eEEeccccceEEEEEeecc-CceeeeE--eeccceeEEEEcCCCCeEEEEEecc
Confidence 7788888899999987431 1223333 1233456788888886 77776665
No 95
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.051 Score=43.19 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=71.3
Q ss_pred CceEEEEeCCCCeEEEEecCc-ccccee--EEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGL-YFANGV--ALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~-~~pngi--a~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
.|.|..+|+++|+...-..-. .....+ ++. +++.+|+++ ..+.|+.+++..++ ..|....++.......-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVAS-GDGNLYALDAKTGK----VLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEE-TTSEEEEEETTTSE----EEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEc-CCCEEEEEECCCCC----EEEEeeccccccceeeec
Confidence 366777787656533222111 122333 333 455799995 67899999985422 123212222212222334
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEE-eCCC-CCcccceeEE
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREF-NDPN-AKNISFVTSA 201 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~-~~~~-g~~~~~~t~~ 201 (224)
++.+|++... +.+..+| .+|+.+... .... ..........
T Consensus 76 ~~~v~v~~~~-------------------------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 76 GGRVYVGTSD-------------------------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp TTEEEEEETT-------------------------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred ccccccccce-------------------------------------eeeEecccCCcceeeeeccccccccccccccCc
Confidence 6788888733 4789999 779998773 3321 1112223334
Q ss_pred EEECCEEEEEeCCCCeEEEeeC
Q 046107 202 LEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 202 ~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
...++.+|++.. +..|..+++
T Consensus 119 ~~~~~~~~~~~~-~g~l~~~d~ 139 (238)
T PF13360_consen 119 AVDGDRLYVGTS-SGKLVALDP 139 (238)
T ss_dssp EEETTEEEEEET-CSEEEEEET
T ss_pred eEecCEEEEEec-cCcEEEEec
Confidence 445778888776 456665553
No 96
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.017 Score=45.50 Aligned_cols=162 Identities=12% Similarity=0.047 Sum_probs=97.1
Q ss_pred ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---ecCccccceeEEec
Q 046107 2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---LEGLYFANGVALSK 78 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~ 78 (224)
|++|.+..-.+..++..+ +|.++.+.-. .+...|.+++..+|+...- ..+-.+..||.-.
T Consensus 37 i~~yphDs~sfTQGL~~~-~g~i~esTG~---------------yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~- 99 (262)
T COG3823 37 IRTYPHDSTSFTQGLEYL-DGHILESTGL---------------YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL- 99 (262)
T ss_pred EEeccCchhhhhcceeee-CCEEEEeccc---------------cccceeEEEeccCceEEEEeecCCccccccceeec-
Confidence 455666666666666654 4466666422 2345688888876654321 1133455688776
Q ss_pred CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107 79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE 158 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~ 158 (224)
|+.+|+-....+.-++|+++. +.+...+ ...|.-.|++.|. -++|.+++..
T Consensus 100 -gd~~y~LTw~egvaf~~d~~t--~~~lg~~--~y~GeGWgLt~d~-~~LimsdGsa----------------------- 150 (262)
T COG3823 100 -GDYFYQLTWKEGVAFKYDADT--LEELGRF--SYEGEGWGLTSDD-KNLIMSDGSA----------------------- 150 (262)
T ss_pred -cceEEEEEeccceeEEEChHH--hhhhccc--ccCCcceeeecCC-cceEeeCCce-----------------------
Confidence 456999988888888898864 1122222 2345567777774 4588887765
Q ss_pred hHHhhhhcCCCceEEEEEECCC-CcEEEEE-eCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 159 LINQLMSTGKGAAAKVVKVSAN-GSIIREF-NDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~-~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
.+...||+ -+....+ ..-+|.++....-+-..+|.||.--+..++|.|++-
T Consensus 151 --------------tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 151 --------------TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP 203 (262)
T ss_pred --------------EEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence 34444554 1211111 111354445555555678899999999999999863
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.088 Score=43.55 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=88.1
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
.|.+.+.|-+..+++- ..+..|.-||.+..+..-+. ....+.-+|++|.|- +|.+...+..
T Consensus 103 V~sL~~sP~~d~FlS~-----------------S~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~ 163 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSS-----------------SLDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFALANGSEL 163 (311)
T ss_pred EEEEEecCCCCeEEec-----------------ccCCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEEecCCCe
Confidence 3455666555555553 23455555564422222222 345566789999983 5555566669
Q ss_pred EEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCc
Q 046107 93 CIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGA 170 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (224)
|..||+.--..+..+.|.-. ......+|.+.+||...+-....
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------------------------------- 208 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------------------------------- 208 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------------------------
Confidence 99999862112333344211 12367899999999844443333
Q ss_pred eEEEEEECC-CCcEEEEEeCCCC-CcccceeEEEE-ECCEEEEEeCCCCeEEEeeC
Q 046107 171 AAKVVKVSA-NGSIIREFNDPNA-KNISFVTSALE-FQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 171 ~~~v~~~~~-~G~~~~~~~~~~g-~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~~~ 223 (224)
+.++.+|+ +|.++..+..... ..++ -.++. -+++..+++....+|.+.++
T Consensus 209 -s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 -SFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -CcEEEEEccCCcEeeeEeeccCCCCcc--eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 45777774 7888777654322 2222 23333 36677777777777776654
No 98
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.20 E-value=0.048 Score=42.67 Aligned_cols=82 Identities=17% Similarity=0.032 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.-.|++++........+. ....-...++|+|+|+.+.|.. ....+|..|++++. ..........+.+.++|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~~~~~n~i~wsP~ 111 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFGTQPRNTISWSPD 111 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeecCCCceEEEECCC
Confidence 346888876544444442 2222368999999999887665 34558888988631 112122234578999999
Q ss_pred CCEEEEEecC
Q 046107 126 GSFWISLIKM 135 (224)
Q Consensus 126 G~l~va~~~~ 135 (224)
|++.+..+-+
T Consensus 112 G~~l~~~g~~ 121 (194)
T PF08662_consen 112 GRFLVLAGFG 121 (194)
T ss_pred CCEEEEEEcc
Confidence 9977776544
No 99
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.0095 Score=48.95 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=78.0
Q ss_pred eEEEEeCCCCeEEEE---ecC-ccccceeEEecCCCEEEEEeC----CCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 50 QLLRYDPSSKQVSIV---LEG-LYFANGVALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~---~~~-~~~pngia~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
..+.+|+++++.-+. .++ ..+-+| ++||||++||.++. +.+-|-.|+.+-+ ......|.. ..-.|-.+.
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t-~GiGpHev~ 168 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFST-HGIGPHEVT 168 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeeccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceeccccc-CCcCcceeE
Confidence 356677764432222 122 223334 68999999999984 4567888887632 111112211 122689999
Q ss_pred ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeE
Q 046107 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTS 200 (224)
Q Consensus 122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~ 200 (224)
+-+||+..+...++ |...|...+.-..+.+ .. -++..+| .+|++++....|....+-.+--
T Consensus 169 lm~DGrtlvvanGG-------IethpdfgR~~lNlds-------Me----PSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 169 LMADGRTLVVANGG-------IETHPDFGRTELNLDS-------ME----PSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred EecCCcEEEEeCCc-------eecccccCccccchhh-------cC----ccEEEEeccccchhhhccCchhhhhcceee
Confidence 99999977776665 3333321111111111 11 1345566 7899888776663322222223
Q ss_pred E-EEECCEEEEEe
Q 046107 201 A-LEFQGNLYLAS 212 (224)
Q Consensus 201 ~-~~~~g~lyv~~ 212 (224)
+ ...+|++|+++
T Consensus 231 ld~g~dgtvwfgc 243 (366)
T COG3490 231 LDIGRDGTVWFGC 243 (366)
T ss_pred eeeCCCCcEEEEE
Confidence 3 34479999987
No 100
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.05 E-value=0.046 Score=47.88 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=62.0
Q ss_pred Cc-eEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 48 HG-QLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g-~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
+| .|-.++.++++++.+..++.....+.+++||+++.|++ .+.+|+.++++.+ +.+..-....+...++++.+++
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred CCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCc
Confidence 44 67788888888888888888889999999999787776 6789999999853 3443211234567788888888
Q ss_pred CEEEEEecC
Q 046107 127 SFWISLIKM 135 (224)
Q Consensus 127 ~l~va~~~~ 135 (224)
++..=..+.
T Consensus 456 r~iAYafP~ 464 (668)
T COG4946 456 RWIAYAFPE 464 (668)
T ss_pred eeEEEecCc
Confidence 766555443
No 101
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.99 E-value=0.037 Score=50.76 Aligned_cols=128 Identities=14% Similarity=0.073 Sum_probs=74.5
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEE---EEccCCC--cccceEeeccCCCCCCceE
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIK---HWLKLGD--KRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~---~~~~~~~--~~~~~~~~~~~~~~p~~i~ 121 (224)
..+.++.++.++++... ........+.++|||++|.+.. .++|+. ...+++. ++....+.......+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 34566655555444332 1223477899999999886654 357777 3333321 2222222222223457899
Q ss_pred ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEE
Q 046107 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSA 201 (224)
Q Consensus 122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~ 201 (224)
+-.++.|.++..... ..|++++-||.....+ +.+......+.+
T Consensus 504 W~~~~~L~V~~~~~~-----------------------------------~~v~~v~vDG~~~~~~--~~~n~~~~v~~v 546 (591)
T PRK13616 504 WRTGDSLVVGRSDPE-----------------------------------HPVWYVNLDGSNSDAL--PSRNLSAPVVAV 546 (591)
T ss_pred EecCCEEEEEecCCC-----------------------------------CceEEEecCCcccccc--CCCCccCceEEE
Confidence 999999887754331 3578899998876553 333333344444
Q ss_pred EEECCEEEEEeCCC
Q 046107 202 LEFQGNLYLASINS 215 (224)
Q Consensus 202 ~~~~g~lyv~~~~~ 215 (224)
+-..+.||+++..+
T Consensus 547 aa~~~~iyv~~~~g 560 (591)
T PRK13616 547 AASPSTVYVTDARA 560 (591)
T ss_pred ecCCceEEEEcCCc
Confidence 44457899887543
No 102
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.97 E-value=0.02 Score=52.36 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.+.+||-.|-. .-.+.++..+.--.-+.|+|+.. |++. +..+.|..++...+ ..+++|.. -.+...-+++.++
T Consensus 515 ~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 515 QTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSPC 588 (707)
T ss_pred ceeeeeecccC-CchhhhcccccccceEEECCccc--ccccCCCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcCC
Confidence 45678877753 22334455566667799999875 4544 56677888887642 23566643 2334588999999
Q ss_pred CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE
Q 046107 126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF 204 (224)
Q Consensus 126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~ 204 (224)
|+..++.... +.|...| +.|+++..+....+ .++++.+.
T Consensus 589 Gr~LaSg~ed------------------------------------~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS 628 (707)
T KOG0263|consen 589 GRYLASGDED------------------------------------GLIKIWDLANGSLVKQLKGHTG----TIYSLSFS 628 (707)
T ss_pred CceEeecccC------------------------------------CcEEEEEcCCCcchhhhhcccC----ceeEEEEe
Confidence 9877776655 5566666 45677666644433 35555544
Q ss_pred -CCEEEEEeCCCCeEEEeeC
Q 046107 205 -QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 205 -~g~lyv~~~~~~~i~~~~~ 223 (224)
+|++++..-+.+.|...++
T Consensus 629 ~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 629 RDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cCCCEEEecCCCCeEEEEEc
Confidence 6788888888888776654
No 103
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0038 Score=49.00 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=46.9
Q ss_pred eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-------------Cccc
Q 046107 4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-------------GLYF 70 (224)
Q Consensus 4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-------------~~~~ 70 (224)
+.+|.|+...|.+... ||.+|.-.. .+.++.|++|++|++....+ ....
T Consensus 169 T~~g~pv~~LNELE~V-dG~lyANVw-----------------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 169 TDDGVPVSKLNELEWV-DGELYANVW-----------------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred EECCeecccccceeee-ccEEEEeee-----------------eecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 4667777777777764 565555432 24568899999888775532 2346
Q ss_pred cceeEEecCCCEEEEEe
Q 046107 71 ANGVALSKHGDFVVVCE 87 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~ 87 (224)
+||||..|+++++|++-
T Consensus 231 lNGIA~~~~~~r~~iTG 247 (262)
T COG3823 231 LNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccceeecCcCCeEEEec
Confidence 89999999998899985
No 104
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.93 E-value=0.019 Score=48.74 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=67.3
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EE--ecCc-------------cccceeE
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IV--LEGL-------------YFANGVA 75 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~--~~~~-------------~~pngia 75 (224)
-+++|++.++|.+|+++.... .......|++++.+ |++. .+ ...+ .+..||+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 677999988999999985410 01123678999987 5442 22 1111 2234899
Q ss_pred EecCCCEEEEEeCCC---------------CeEEEEEccCCCcccceEeeccC-------CCCCCceEECCCCCEEEEEe
Q 046107 76 LSKHGDFVVVCESWK---------------FRCIKHWLKLGDKRDREIFIENL-------PGGPDNINLAPDGSFWISLI 133 (224)
Q Consensus 76 ~~~dg~~Lyv~~~~~---------------~~I~~~~~~~~~~~~~~~~~~~~-------~~~p~~i~~d~dG~l~va~~ 133 (224)
++|||+.||++.-.. -+|++|++........+..+... ...+..++.-++|+++|-.-
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888776322 36788887531100111122111 13566777888999888765
Q ss_pred cC
Q 046107 134 KM 135 (224)
Q Consensus 134 ~~ 135 (224)
..
T Consensus 234 ~~ 235 (326)
T PF13449_consen 234 DF 235 (326)
T ss_pred cC
Confidence 53
No 105
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.93 E-value=0.076 Score=45.69 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-cCCC-CCCceEECC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPG-GPDNINLAP 124 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~-~p~~i~~d~ 124 (224)
..|.++.+|.++|+.....+ ......+++. ++.||+++ ..+.|+.++.+.++ ..|.. ...+ .....++ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGS----ELWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceEe--CCEEEEEC-CCCeEEEEECCCCc----EEEccccccCCccccCEE-E
Confidence 35788999987776443222 2223344443 45699986 56899999986432 12221 1111 1122233 3
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEE
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALE 203 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~ 203 (224)
++.+|+++.. +.|+.+|++ |+.+..+..+.+. ..+..+.
T Consensus 320 g~~l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~ 359 (377)
T TIGR03300 320 GGYLVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVV 359 (377)
T ss_pred CCEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEE
Confidence 5678887543 578888975 9998888654432 1233355
Q ss_pred ECCEEEEEeCCC
Q 046107 204 FQGNLYLASINS 215 (224)
Q Consensus 204 ~~g~lyv~~~~~ 215 (224)
.+++||+++..+
T Consensus 360 ~~~~l~v~~~dG 371 (377)
T TIGR03300 360 VGDGLLVQTRDG 371 (377)
T ss_pred ECCEEEEEeCCc
Confidence 678999998754
No 106
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.92 E-value=0.14 Score=45.33 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=48.1
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
-...+.++|++||++.+-|. ...++|+.|.+.|..+.+..+.. ...+.+..+++.+||.++++.-..
T Consensus 442 ~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred cccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccC
Confidence 34557799999999855554 45678999999886543332332 345678999999999988876554
No 107
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.91 E-value=0.066 Score=46.20 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=76.8
Q ss_pred eEEEEeCCCCeEEEEe-------cCccccceeEEec---CCC-EEEEEeCCCCeEEEEEccCC---Ccc--cceEeeccC
Q 046107 50 QLLRYDPSSKQVSIVL-------EGLYFANGVALSK---HGD-FVVVCESWKFRCIKHWLKLG---DKR--DREIFIENL 113 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~~~---dg~-~Lyv~~~~~~~I~~~~~~~~---~~~--~~~~~~~~~ 113 (224)
++|++|++++.++.+. +....+.|+|+-. +|+ ++||.. ..+.+..|.+... .+. ..+.| ..
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~ 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREF--KV 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence 6899998777776543 3445688999853 455 234444 4578888887521 111 12333 24
Q ss_pred CCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--C-cEEEEEeC
Q 046107 114 PGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--G-SIIREFND 189 (224)
Q Consensus 114 ~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G-~~~~~~~~ 189 (224)
++.+.|+++|.+ |.||++.... .|++++.+ + ..-..+..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~-------------------------------------GIW~y~Aep~~~~~~~~v~~ 249 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDV-------------------------------------GIWRYDAEPEGGNDRTLVAS 249 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTT-------------------------------------EEEEEESSCCC-S--EEEEE
T ss_pred CCcceEEEEecccCCEEEecCcc-------------------------------------EEEEEecCCCCCCcceeeec
Confidence 568999999976 7899998876 47888754 2 22222221
Q ss_pred CCCCcc-cceeEEEE-----ECCEEEEEeCCCCeEEEeeC
Q 046107 190 PNAKNI-SFVTSALE-----FQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 190 ~~g~~~-~~~t~~~~-----~~g~lyv~~~~~~~i~~~~~ 223 (224)
..|..+ ..+-.+.. ..|.|.+++=+++...+|+.
T Consensus 250 ~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 250 ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 222211 22222322 13689999988888888875
No 108
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=96.88 E-value=0.073 Score=44.65 Aligned_cols=125 Identities=13% Similarity=0.200 Sum_probs=74.4
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC------------ccccceeEEe-
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG------------LYFANGVALS- 77 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~------------~~~pngia~~- 77 (224)
-..|+|..+++|.+.++-.+ ...|+++++++|++.....+ +.+-+...+-
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~ 206 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLN 206 (299)
T ss_pred cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEec
Confidence 34688888889998877532 45688888777766544322 2223344444
Q ss_pred ---cCCCEEEEEeC---------CCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhh
Q 046107 78 ---KHGDFVVVCES---------WKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVE 141 (224)
Q Consensus 78 ---~dg~~Lyv~~~---------~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~ 141 (224)
.++..+.+-+. .+++|+.+++..........+.+. .....-++-.-++|+++++.+..
T Consensus 207 ~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~------ 280 (299)
T PF14269_consen 207 ESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNN------ 280 (299)
T ss_pred cCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCC------
Confidence 44432233331 456788888763221111112100 11133455556789999987776
Q ss_pred hhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe
Q 046107 142 TVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188 (224)
Q Consensus 142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~ 188 (224)
+++.+++++|+++-.+.
T Consensus 281 ------------------------------g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 281 ------------------------------GRISEFTPDGEVVWEAQ 297 (299)
T ss_pred ------------------------------ceEEEECCCCCEEEEEE
Confidence 79999999999887654
No 109
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.87 E-value=0.17 Score=42.23 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=79.8
Q ss_pred ceeEEec--CCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC--CCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107 72 NGVALSK--HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP--GGPDNINLAPDGSFWISLIKMNSSAVETVHSS 146 (224)
Q Consensus 72 ngia~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~--~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~ 146 (224)
.|+|+.. .+++||.++...++|-+|+-.=..+.....|.+. +| ..|-+|.-- .|+|||+-......-.
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~------ 213 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRN------ 213 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCccc------
Confidence 3788774 3679999999999999997541111111223332 22 367787654 5899998654321100
Q ss_pred hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-------ECCEEEEEeCCCCeEE
Q 046107 147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-------FQGNLYLASINSNFIG 219 (224)
Q Consensus 147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-------~~g~lyv~~~~~~~i~ 219 (224)
. . .....++.|-+||.+|++++.+.+. | .+..+=.++. ..|.|.|++++..+|-
T Consensus 214 ---d-----------~---v~G~G~G~VdvFd~~G~l~~r~as~-g-~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In 274 (336)
T TIGR03118 214 ---D-----------E---VAGAGLGYVNVFTLNGQLLRRVASS-G-RLNAPWGLAIAPESFGSLSGALLVGNFGDGTIN 274 (336)
T ss_pred ---c-----------c---ccCCCcceEEEEcCCCcEEEEeccC-C-cccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence 0 0 1223348999999999999998653 3 2444433332 2499999999999999
Q ss_pred EeeC
Q 046107 220 KLPL 223 (224)
Q Consensus 220 ~~~~ 223 (224)
.++-
T Consensus 275 aFD~ 278 (336)
T TIGR03118 275 AYDP 278 (336)
T ss_pred EecC
Confidence 8873
No 110
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.86 E-value=0.0045 Score=51.55 Aligned_cols=60 Identities=27% Similarity=0.310 Sum_probs=49.1
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~ 89 (224)
+.+|++.... +|++||+|+. .|.|.++|+++|+.+.+..-..+|.|+++. |+.++|+-+.
T Consensus 202 LsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 202 LSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred ccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 5666666664 7889999854 789999999888999888888899999998 8878887653
No 111
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.82 E-value=0.058 Score=44.89 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=44.5
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC-Ccccc---eEeecc-----CCCCCCceEECCCCCEEEEE
Q 046107 65 LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG-DKRDR---EIFIEN-----LPGGPDNINLAPDGSFWISL 132 (224)
Q Consensus 65 ~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~---~~~~~~-----~~~~p~~i~~d~dG~l~va~ 132 (224)
...+..|+||+++|.+ .+||++..++....|+.+.. ..+.. .+-+.. .++.|.|+++..-..+-|..
T Consensus 19 Dp~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 19 DPGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred CccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 3467899999999977 69999999999999998621 11111 111111 12479999998654444444
No 112
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.81 E-value=0.047 Score=46.20 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=48.2
Q ss_pred cceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE--EEec------CccccceeEEecCCCEEE
Q 046107 14 NDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS--IVLE------GLYFANGVALSKHGDFVV 84 (224)
Q Consensus 14 n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~--~~~~------~~~~pngia~~~dg~~Ly 84 (224)
-.+++.+|| .+|+++.. |.+. ..+..+--|-.+|.++-+.+ +.+. ...+++-++++.||+++|
T Consensus 39 ~~~~~spdgk~~y~a~T~--~sR~------~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETF--YSRG------TRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEEE-TTSSEEEEEEEE--EEET------TEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEE
T ss_pred CceeECCCCCEEEEEEEE--Eecc------ccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEE
Confidence 346778887 47776543 2111 01122345777888754322 2322 235567899999999999
Q ss_pred EEe-CCCCeEEEEEccC
Q 046107 85 VCE-SWKFRCIKHWLKL 100 (224)
Q Consensus 85 v~~-~~~~~I~~~~~~~ 100 (224)
|.+ +....|..+|+..
T Consensus 111 V~N~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAA 127 (342)
T ss_dssp EEEESSSEEEEEEETTT
T ss_pred EEccCCCCeEEEEECCC
Confidence 999 7788999999975
No 113
>PTZ00420 coronin; Provisional
Probab=96.79 E-value=0.3 Score=44.67 Aligned_cols=53 Identities=4% Similarity=-0.118 Sum_probs=36.2
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.++.|..+|..+++.............++|++||+ ++++....+.|..|++..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC
Confidence 35777778876554332222334467899999998 556666678899999864
No 114
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.73 E-value=0.21 Score=42.32 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=82.5
Q ss_pred ceEEEEeCCCCeEEEEec---Cccccce-eEEecCCC--EE-EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 49 GQLLRYDPSSKQVSIVLE---GLYFANG-VALSKHGD--FV-VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~---~~~~png-ia~~~dg~--~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
..+|.+|.+. .+.+.+ -...|.| +|+++... +| |=.++..+.|+.|+... +.....+ .--.+..--++
T Consensus 106 e~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I-~aH~~~lAala 180 (391)
T KOG2110|consen 106 ESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTI-NAHKGPLAALA 180 (391)
T ss_pred ccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEE-EecCCceeEEE
Confidence 4588888763 333322 2244555 35666443 44 33346678999999754 2222222 11124567899
Q ss_pred ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC--CCCcEEEEEeCCCCCccccee
Q 046107 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS--ANGSIIREFNDPNAKNISFVT 199 (224)
Q Consensus 122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~G~~~~~~~~~~g~~~~~~t 199 (224)
++++|.+..+.... |.|+|+= ++|+.+..+. +|.....+.
T Consensus 181 fs~~G~llATASeK------------------------------------GTVIRVf~v~~G~kl~eFR--RG~~~~~Iy 222 (391)
T KOG2110|consen 181 FSPDGTLLATASEK------------------------------------GTVIRVFSVPEGQKLYEFR--RGTYPVSIY 222 (391)
T ss_pred ECCCCCEEEEeccC------------------------------------ceEEEEEEcCCccEeeeee--CCceeeEEE
Confidence 99999999998887 5666654 7898877773 465445566
Q ss_pred EEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107 200 SALEF-QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 200 ~~~~~-~g~lyv~~~~~~~i~~~~~ 223 (224)
+++++ +..+..++.....|.+|+|
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEe
Confidence 77776 4555555666777877765
No 115
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.72 E-value=0.0062 Score=35.29 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=31.8
Q ss_pred EEEEEeCCCC-eEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 82 FVVVCESWKF-RCIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 82 ~Lyv~~~~~~-~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
.||++|...+ +|.+.+++|. ..++++...-..|.||++|+
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence 5999999999 9999999983 34555544456899999984
No 116
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.64 E-value=0.075 Score=41.59 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=61.9
Q ss_pred ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 046107 13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW-- 89 (224)
Q Consensus 13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-- 89 (224)
.++++..|+|+ +.+.... ....+.-+|.+...+..+ +....|.|.++|+|++|.++...
T Consensus 62 I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~ 123 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNL 123 (194)
T ss_pred eEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCC
Confidence 56888888885 4444211 122455566542222222 23456889999999988887643
Q ss_pred CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107 90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK 134 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~ 134 (224)
.+.|..++.+. .+.+..........++++|+|+.+++...
T Consensus 124 ~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 124 NGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 46788898863 22333222334689999999998887654
No 117
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.60 E-value=0.16 Score=43.76 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCceEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCCeEEEEEcc-CCCcccceEeeccCCC--CCCce
Q 046107 47 PHGQLLRYDPSSKQVSIVLEG---LYFANGVALSKHGDFVVVCESWKFRCIKHWLK-LGDKRDREIFIENLPG--GPDNI 120 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~~--~p~~i 120 (224)
.+|.|+-+|+++++...-... ....++-.+..||+ ||+++... .++.++.+ |. .+|....++ .-.+-
T Consensus 76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~y~ld~~~G~-----~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KLYALDASTGT-----LVWSRNVGGSPYYASP 148 (370)
T ss_pred CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eEEEEECCCCc-----EEEEEecCCCeEEecC
Confidence 356888999887664321111 23444433444886 99998765 89999984 42 233222222 11233
Q ss_pred EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCccccee
Q 046107 121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVT 199 (224)
Q Consensus 121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t 199 (224)
++-.+|.+|+.. .. +.++.++++ |+....+..+.+.......
T Consensus 149 ~v~~~~~v~~~s-~~------------------------------------g~~~al~~~tG~~~W~~~~~~~~~~~~~~ 191 (370)
T COG1520 149 PVVGDGTVYVGT-DD------------------------------------GHLYALNADTGTLKWTYETPAPLSLSIYG 191 (370)
T ss_pred cEEcCcEEEEec-CC------------------------------------CeEEEEEccCCcEEEEEecCCcccccccc
Confidence 444678888876 22 578899987 8887665443210011111
Q ss_pred EEEEECCEEEEEeCC
Q 046107 200 SALEFQGNLYLASIN 214 (224)
Q Consensus 200 ~~~~~~g~lyv~~~~ 214 (224)
.....++.+|+++..
T Consensus 192 ~~~~~~~~vy~~~~~ 206 (370)
T COG1520 192 SPAIASGTVYVGSDG 206 (370)
T ss_pred CceeecceEEEecCC
Confidence 112567888888763
No 118
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.027 Score=50.39 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-Cc-cccceeEEecCCCEEEEEeCCCCe
Q 046107 15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GL-YFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~-~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
.+..|.+|++|+... +| ++++|+.+++.-.... .. +..|.+..+-.|+ |||... ..
T Consensus 169 aLv~D~~g~lWvgT~------------------dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd--qG 226 (671)
T COG3292 169 ALVFDANGRLWVGTP------------------DG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD--QG 226 (671)
T ss_pred eeeeeccCcEEEecC------------------Cc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec--cc
Confidence 456677888888752 33 8888987666554432 23 4456778888886 999964 46
Q ss_pred EEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecC
Q 046107 93 CIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~ 135 (224)
|+.++..|-.. .-+....| +...-+.-|.+|++|++...+
T Consensus 227 v~~~e~~G~~~---sn~~~~lp~~~I~ll~qD~qG~lWiGTenG 267 (671)
T COG3292 227 VYLQEAEGWRA---SNWGPMLPSGNILLLVQDAQGELWIGTENG 267 (671)
T ss_pred eEEEchhhccc---cccCCCCcchheeeeecccCCCEEEeeccc
Confidence 77777765211 11111111 233455668899999998765
No 119
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.50 E-value=0.13 Score=44.43 Aligned_cols=125 Identities=11% Similarity=0.040 Sum_probs=63.2
Q ss_pred CCceEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCC-C-CceEEC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGG-P-DNINLA 123 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~-p-~~i~~d 123 (224)
+...+|.+|.++++.+++.++... .-|..++++.+.||... ....|+++++++. +.+++++..... . ....++
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC---cEEEEEECCcccccccceeeC
Confidence 456799999998999988765433 33788899888885443 3468999999762 233444322211 1 234457
Q ss_pred CCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeC
Q 046107 124 PDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFND 189 (224)
Q Consensus 124 ~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~ 189 (224)
+|+..+++....+. .......+...+++... .+ +.+|+++|-+ |+...++.+
T Consensus 134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-----------~p--~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYEA-----------RP--HCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp TTSSEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEE
T ss_pred CCccEEEEEEEeeh-hccCccccHHHHHHHhh-----------CC--CceEEEEECCCCceeEEEec
Confidence 88998888754321 00111112223333222 22 2899999965 666555544
No 120
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.47 E-value=0.016 Score=33.00 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=29.6
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107 78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA 123 (224)
Q Consensus 78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 123 (224)
||+++|||++...+.|..+++.... ....+ .....|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i--~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATI--PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEE--ECCCCCceEEeC
Confidence 6788999999999999999985421 11111 124579998874
No 121
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.43 E-value=0.28 Score=42.13 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=31.2
Q ss_pred CceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 48 HGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.|.|+.+|..+|+...-.. ......+++++ ++.+||.. ..+.++.++.+.
T Consensus 74 ~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~-~~g~l~ald~~t 124 (377)
T TIGR03300 74 DGTVVALDAETGKRLWRVDLDERLSGGVGAD--GGLVFVGT-EKGEVIALDAED 124 (377)
T ss_pred CCeEEEEEccCCcEeeeecCCCCcccceEEc--CCEEEEEc-CCCEEEEEECCC
Confidence 5789999987776543211 11222345554 45689876 457999999853
No 122
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.40 E-value=0.4 Score=38.88 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=66.7
Q ss_pred cccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE--EEEecCccccceeEEecCCCEEEEEeC
Q 046107 12 FANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV--SIVLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 12 ~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~--~~~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
..|.|...|+ +.|+++|. .|.|+.+|...... +.+.+....-..+++.|||+ ..++-.
T Consensus 126 pVn~vvlhpnQteLis~dq------------------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~n 186 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQ------------------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAAN 186 (311)
T ss_pred CcceEEecCCcceEEeecC------------------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEec
Confidence 3467777774 56777763 47788888753322 22345566667999999998 556666
Q ss_pred CCCeEEEEEccCC-CcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107 89 WKFRCIKHWLKLG-DKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 89 ~~~~I~~~~~~~~-~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+++..+.+++-++ .....+..... -.++.--..+.||+.+.++....
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 7888888887542 11222221111 12456677788999888877665
No 123
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.38 E-value=0.5 Score=42.03 Aligned_cols=72 Identities=21% Similarity=0.123 Sum_probs=50.2
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec---C-ccccceeEEecCCCEEEEE
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE---G-LYFANGVALSKHGDFVVVC 86 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~---~-~~~pngia~~~dg~~Lyv~ 86 (224)
++.|+|...|||+.|.|..+ +|.++.||..+|+..-..+ . .....+|+|+||++++ ++
T Consensus 191 kFV~~VRysPDG~~Fat~gs-----------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T 252 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGS-----------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-LT 252 (603)
T ss_pred cceeeEEECCCCCeEEEecC-----------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE-EE
Confidence 46789999999999999743 7899999987665432222 1 2334689999999854 55
Q ss_pred eCCCCeEEEEEccC
Q 046107 87 ESWKFRCIKHWLKL 100 (224)
Q Consensus 87 ~~~~~~I~~~~~~~ 100 (224)
.+....+..++...
T Consensus 253 ~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 253 VSADKTIKIWDVST 266 (603)
T ss_pred ecCCceEEEEEeec
Confidence 55555666666643
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.33 Score=40.26 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=42.1
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEc-cCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWL-KLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~-~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...-+.|.++|||+.|.++.. .+.++.++. +|.. ...|... ....|-..++.|||.+.++..+.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD 253 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCC
Confidence 444568999999998888875 456777775 3421 1222211 11246677888999988888776
No 125
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.30 E-value=0.36 Score=41.91 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=65.2
Q ss_pred CceEEEEeCCCCeEEEEecCcc------------ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLY------------FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG 115 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~------------~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 115 (224)
.|.|+.+|.++|+...-.+-.. ...+++++ ++.+|+.. ..+.++.++.+.++. .|....++
T Consensus 78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~v~v~~-~~g~l~ald~~tG~~----~W~~~~~~ 150 (394)
T PRK11138 78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GGKVYIGS-EKGQVYALNAEDGEV----AWQTKVAG 150 (394)
T ss_pred CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CCEEEEEc-CCCEEEEEECCCCCC----cccccCCC
Confidence 4678888887676432211110 01234554 34699886 457899999864321 33211121
Q ss_pred CC-CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCC
Q 046107 116 GP-DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAK 193 (224)
Q Consensus 116 ~p-~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~ 193 (224)
.. ....+ .+|.+|+.... +.++.+|+ +|+.+..+......
T Consensus 151 ~~~ssP~v-~~~~v~v~~~~-------------------------------------g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 151 EALSRPVV-SDGLVLVHTSN-------------------------------------GMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ceecCCEE-ECCEEEEECCC-------------------------------------CEEEEEEccCCCEeeeecCCCCc
Confidence 11 11123 25778876433 47888996 58887766432110
Q ss_pred -cccceeEEEEECCEEEEEeCCCCeEEEe
Q 046107 194 -NISFVTSALEFQGNLYLASINSNFIGKL 221 (224)
Q Consensus 194 -~~~~~t~~~~~~g~lyv~~~~~~~i~~~ 221 (224)
.....+..+..++.+|+++.. ..+..+
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~-g~v~a~ 220 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDN-GRVSAV 220 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCC-CEEEEE
Confidence 000111223345677776643 344443
No 126
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.28 E-value=0.065 Score=46.76 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=46.3
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeecc-CCCCCCceEECCCCCEEEEEecC
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIEN-LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.|+++|+++ .+++.+..++|+.|...... ....+.|-.. .+|++-.+.+.+||.+.++....
T Consensus 390 ~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 390 CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 588999998 88999999999999875432 2223333221 56899999999999988876665
No 127
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.16 Score=41.91 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCceEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeCC--CC-eEEEEEccCCCcccceEeec---------
Q 046107 47 PHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKHGDFVVVCESW--KF-RCIKHWLKLGDKRDREIFIE--------- 111 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~dg~~Lyv~~~~--~~-~I~~~~~~~~~~~~~~~~~~--------- 111 (224)
..|.|-.||...+ ...+ .+-.-+|+-+.+.+||+.|.|++.. ++ .--|..++=......-++.+
T Consensus 138 ~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek 216 (366)
T COG3490 138 NRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK 216 (366)
T ss_pred CCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence 4667777776532 2222 3345678899999999988888641 11 00111111000000111111
Q ss_pred -cCC-----CCCCceEECCCCCEEEEEecCCc--hhhhhhccChhHHHHHhh--chh-----hHHhhhh-cCCCceEEEE
Q 046107 112 -NLP-----GGPDNINLAPDGSFWISLIKMNS--SAVETVHSSKNRKQLLEE--HPE-----LINQLMS-TGKGAAAKVV 175 (224)
Q Consensus 112 -~~~-----~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p~~~~~~~~--~~~-----~~~~~~~-~~~~~~~~v~ 175 (224)
.+| -+...+++++||++|++..+... -...++...-..++ ++- +|. +.+.+.+ ..++..+.|.
T Consensus 217 h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 217 HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 012 14588999999999999876431 11111111000000 000 110 1111212 2233346777
Q ss_pred EECCCCcEEEEEeCCCCCcccceeEE--E--EECCEEEEEeCCCCeEE
Q 046107 176 KVSANGSIIREFNDPNAKNISFVTSA--L--EFQGNLYLASINSNFIG 219 (224)
Q Consensus 176 ~~~~~G~~~~~~~~~~g~~~~~~t~~--~--~~~g~lyv~~~~~~~i~ 219 (224)
.-+|.|.....+....|.++...... + .....=|+.+....+|-
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~ 343 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRII 343 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEE
Confidence 77888888888877777755433221 1 22344444444444443
No 128
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.22 E-value=0.21 Score=43.13 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=68.3
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~ 88 (224)
-....++++.+||.+..|-.. -..|+|| |..+|...++..+ .+...+++|+|+| +...+.+
T Consensus 303 s~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs 364 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGS 364 (459)
T ss_pred ccccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECCCc-eEEeecC
Confidence 345568999999999888421 1245665 4445666665544 5566799999998 5777877
Q ss_pred CCCeEEEEEccCCCcccceEeeccC--CCCCCceEECC-CCCEEEEEecC
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAP-DGSFWISLIKM 135 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~-dG~l~va~~~~ 135 (224)
..+.+-.+|+..-. .+...+ ......+.+.+ .|.+.++..+.
T Consensus 365 ~Dnt~kVWDLR~r~-----~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRS-----ELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred CCCcEEEeeecccc-----cceecccccchhhheEecccCCeEEEEcccC
Confidence 78877778776421 122111 12457888887 57788887777
No 129
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.13 Score=45.34 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=50.5
Q ss_pred ceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.+++.++.++++...+.+ ..+.+ ..+|+|||++|.++.... ..|+.+++++.. ...+. ...+.-..-.+.||
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt-~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLT-NGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecc-cCCccccCccCCCC
Confidence 568888887776665554 33333 578999999997776443 468888887643 11222 23333345567788
Q ss_pred CC--EEEEEecC
Q 046107 126 GS--FWISLIKM 135 (224)
Q Consensus 126 G~--l~va~~~~ 135 (224)
|+ +|+++-.+
T Consensus 293 G~~ivf~Sdr~G 304 (425)
T COG0823 293 GSKIVFTSDRGG 304 (425)
T ss_pred CCEEEEEeCCCC
Confidence 87 44444333
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.15 E-value=0.18 Score=42.31 Aligned_cols=116 Identities=11% Similarity=-0.042 Sum_probs=72.8
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCeEEEEEcc--CCCcccceEeecc---CCCCCCceEECCCC-CEEEEEecCCchh
Q 046107 66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIEN---LPGGPDNINLAPDG-SFWISLIKMNSSA 139 (224)
Q Consensus 66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~---~~~~p~~i~~d~dG-~l~va~~~~~~~~ 139 (224)
+.......++|+|||..||... +++|.+|++. |-.-....++..+ ..+....+++.|-. ..+....+.+
T Consensus 156 de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--- 230 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--- 230 (406)
T ss_pred HhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc---
Confidence 3456678999999999888774 6799999984 2111111112111 22344566666643 3555555541
Q ss_pred hhhhccChhHHHHHhhchhhHHhhhhcCCCceEEE-EEECCCCcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCC
Q 046107 140 VETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKV-VKVSANGSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSN 216 (224)
Q Consensus 140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~ 216 (224)
++ ++-+-++.++..+....| ++|.+. +++++||.+....+
T Consensus 231 ---------------------------------~~giy~~~~~~pl~llggh~g----GvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 231 ---------------------------------RVGIYNDDGRRPLQLLGGHGG----GVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred ---------------------------------eeeeEecCCCCceeeecccCC----CeeeEEeccCcCeecccccCCC
Confidence 22 233445678888765544 477765 67899999999999
Q ss_pred eEEEeeC
Q 046107 217 FIGKLPL 223 (224)
Q Consensus 217 ~i~~~~~ 223 (224)
.|..-++
T Consensus 274 kIl~WDi 280 (406)
T KOG2919|consen 274 KILCWDI 280 (406)
T ss_pred eEEEEee
Confidence 9987664
No 131
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.22 Score=43.01 Aligned_cols=108 Identities=10% Similarity=0.039 Sum_probs=61.6
Q ss_pred ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCcccc-ceeEEecCCCEEEEEeCCCCeEEE
Q 046107 19 ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFA-NGVALSKHGDFVVVCESWKFRCIK 95 (224)
Q Consensus 19 ~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~ 95 (224)
+....+||...+ -++..........+..+|.+.++ ++.+... .+...| --|.||||.++| ++......+..
T Consensus 222 ~htdEVWfl~FS----~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryL-laCg~~e~~~l 295 (519)
T KOG0293|consen 222 DHTDEVWFLQFS----HNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYL-LACGFDEVLSL 295 (519)
T ss_pred hCCCcEEEEEEc----CCCeeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeE-EecCchHheee
Confidence 344567777633 22222222223345668888887 4444433 234444 468999999855 55556667888
Q ss_pred EEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecC
Q 046107 96 HWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++.+.+ +....+. +..-.+...++-|||.=+|+....
T Consensus 296 wDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d 333 (519)
T KOG0293|consen 296 WDVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD 333 (519)
T ss_pred ccCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence 887642 2222211 112356777788888777776665
No 132
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.18 Score=42.84 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=60.5
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~~ 89 (224)
.....+...+||..++|-+. .+..+..+|++++....+. .++.+-.-+.+||||+.||.+...
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 34445555666777776432 4567888888877655554 455555678999999977766542
Q ss_pred CCeEEEEE-ccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107 90 KFRCIKHW-LKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129 (224)
Q Consensus 90 ~~~I~~~~-~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~ 129 (224)
.+.++. ... ..+.+.+.- ..++..+-+++++|...
T Consensus 260 --avfrlw~e~q--~wt~erw~l-gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 260 --AVFRLWQENQ--SWTKERWIL-GSGRVQTACWSPCGSFL 295 (445)
T ss_pred --ceeeeehhcc--cceecceec-cCCceeeeeecCCCCEE
Confidence 445554 322 122333432 34578889999999833
No 133
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.04 E-value=0.08 Score=46.23 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=91.6
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec--cCCCCCCceEECC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE--NLPGGPDNINLAP 124 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~ 124 (224)
-+..|--+|..+|++..-...-..|+-+.+.||+..+|++-...++|..+|+..++ ++.+ ..-+....+.+=+
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQEYDRHLGAILDITFVD 352 (503)
T ss_pred cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHHHHhhhhheeeeEEcc
Confidence 35666677888888887777788899999999996699999999999999997422 2211 1224567888888
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF 204 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~ 204 (224)
+|.-+++.....+ -+|+.++ -+..++.+.++.- .+.++.....
T Consensus 353 ~g~rFissSDdks----------------------------------~riWe~~-~~v~ik~i~~~~~--hsmP~~~~~P 395 (503)
T KOG0282|consen 353 EGRRFISSSDDKS----------------------------------VRIWENR-IPVPIKNIADPEM--HTMPCLTLHP 395 (503)
T ss_pred CCceEeeeccCcc----------------------------------EEEEEcC-CCccchhhcchhh--ccCcceecCC
Confidence 8998888777621 2334333 2333344434321 2344444445
Q ss_pred CCEEEEEeCCCCeEEEeeC
Q 046107 205 QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 205 ~g~lyv~~~~~~~i~~~~~ 223 (224)
.+..+.+....|+|+.+.+
T Consensus 396 ~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred CCCeehhhccCceEEEEec
Confidence 7888888888899888764
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.75 Score=40.28 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=48.6
Q ss_pred CceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.-+||++|.+.+..-+-+.-..+| .-.++.|+|....++.+-+.-.+.||+...+..............-..+.+.+++
T Consensus 236 ~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 236 TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS 315 (514)
T ss_pred cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCC
Confidence 446888886533211112233455 3678899998566666666779999986533322222111111234678888998
Q ss_pred CEEEEEe
Q 046107 127 SFWISLI 133 (224)
Q Consensus 127 ~l~va~~ 133 (224)
++.+-.+
T Consensus 316 ~fia~~G 322 (514)
T KOG2055|consen 316 NFIAIAG 322 (514)
T ss_pred CeEEEcc
Confidence 8444433
No 135
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.97 E-value=0.042 Score=31.72 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.7
Q ss_pred CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEec
Q 046107 22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSK 78 (224)
Q Consensus 22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~ 78 (224)
|+||+||... ...+.+.+.++...+. +.+++..|+|||+++
T Consensus 1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 5799999651 1378888877544444 467899999999975
No 136
>PTZ00421 coronin; Provisional
Probab=95.89 E-value=1.3 Score=39.99 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=49.1
Q ss_pred CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.++.|..+|..+++....... ....+.++|+|||+ ++++....+.|..|++..+.. ...+..........+.+.++
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCC
Confidence 367787888765554333333 34467999999998 666667788999999864221 11111111112234556666
Q ss_pred CCEEEEEe
Q 046107 126 GSFWISLI 133 (224)
Q Consensus 126 G~l~va~~ 133 (224)
+...++.+
T Consensus 223 ~~~ivt~G 230 (493)
T PTZ00421 223 KDLIITLG 230 (493)
T ss_pred CCeEEEEe
Confidence 66555543
No 137
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.79 E-value=0.91 Score=37.62 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=56.4
Q ss_pred CceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCC
Q 046107 48 HGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPD 125 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~d 125 (224)
+..-..+|...+...+ +.....-.|.++|.|+|. -|++-+..+....||+..+ .+..++... .-.....+++...
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEccc
Confidence 3444445544344333 344456679999999996 8999999999999998642 223343321 1124588999999
Q ss_pred CCEEEEEecC
Q 046107 126 GSFWISLIKM 135 (224)
Q Consensus 126 G~l~va~~~~ 135 (224)
|++.++....
T Consensus 285 GRlLfagy~d 294 (343)
T KOG0286|consen 285 GRLLFAGYDD 294 (343)
T ss_pred ccEEEeeecC
Confidence 9998887555
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.22 Score=45.58 Aligned_cols=77 Identities=21% Similarity=0.109 Sum_probs=52.6
Q ss_pred ceeeeccccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecC
Q 046107 2 IKIHLCHLIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKH 79 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~d 79 (224)
.++.........+++++.|||. +.++- ..+|+.+|++.|..-.. .....--+-+|++.|
T Consensus 4 ~~~~r~~~~hci~d~afkPDGsqL~lAA-------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~d 64 (1081)
T KOG1538|consen 4 VLTWRDKAEHCINDIAFKPDGTQLILAA-------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD 64 (1081)
T ss_pred hhhhhcccccchheeEECCCCceEEEec-------------------CCEEEEEeCCCcccccccccccceEEEEEEccC
Confidence 4555555667899999999995 55552 35799999875644333 333445678999999
Q ss_pred CCEEEEEeCCCCeEEEEEc
Q 046107 80 GDFVVVCESWKFRCIKHWL 98 (224)
Q Consensus 80 g~~Lyv~~~~~~~I~~~~~ 98 (224)
|+ .|.+-.....|..+..
T Consensus 65 Gk-rFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 65 GK-RFASGSADKSVIIWTS 82 (1081)
T ss_pred Cc-eeccCCCceeEEEecc
Confidence 97 7777666555555554
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.17 Score=44.16 Aligned_cols=84 Identities=8% Similarity=0.070 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~ 127 (224)
.|.|..+...++++-.-..--....+++|+.|++.||++.. .++||.+++... .-...|.+...-+-..++...+|.
T Consensus 324 ~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 324 NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS 400 (514)
T ss_pred CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc
Confidence 45666666544432111112233458899999997877764 569999999642 223445543222446677778888
Q ss_pred EEEEEecC
Q 046107 128 FWISLIKM 135 (224)
Q Consensus 128 l~va~~~~ 135 (224)
|+|.+..
T Consensus 401 -ylA~GS~ 407 (514)
T KOG2055|consen 401 -YLATGSD 407 (514)
T ss_pred -eEEeccC
Confidence 5555444
No 140
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.56 E-value=0.14 Score=42.76 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=64.6
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeC
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI---VLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~---~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
..|++.+.|...|..+- ..++.|--+|.++..++. +.++......|.++|.|.+|.|..
T Consensus 174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 45677777776776664 346667677765332222 123444456899999999887764
Q ss_pred CCCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCCEEEEEecC
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
....+..|++++ .+.|..- -.+....+...+.|++|++....
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence 556677788764 2344321 12345677788999999998876
No 141
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.44 E-value=0.93 Score=40.70 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-----------------CCCCeEEEEEccCCCcccceE
Q 046107 46 EPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-----------------SWKFRCIKHWLKLGDKRDREI 108 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-----------------~~~~~I~~~~~~~~~~~~~~~ 108 (224)
...|.|+.+|.++|+...-.+.. -.+++.+| +.+|+.. ...++|+.+++.+++ .+
T Consensus 308 ~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~----~~ 379 (488)
T cd00216 308 PKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK----VV 379 (488)
T ss_pred CCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc----Ee
Confidence 34788999999878644221111 23466666 4588853 135688888886432 23
Q ss_pred eeccCC--------CCC--Cc-eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEE
Q 046107 109 FIENLP--------GGP--DN-INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKV 177 (224)
Q Consensus 109 ~~~~~~--------~~p--~~-i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 177 (224)
|..... +.| .+ +++ .++.+|+++.. +.++.+
T Consensus 380 W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~d-------------------------------------G~l~al 421 (488)
T cd00216 380 WEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAAD-------------------------------------GYFRAF 421 (488)
T ss_pred eEeeCCccccccccCCcccCcceEe-cCCeEEEECCC-------------------------------------CeEEEE
Confidence 332111 011 12 333 45678887643 578999
Q ss_pred CC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCC
Q 046107 178 SA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINS 215 (224)
Q Consensus 178 ~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~ 215 (224)
|. +|+++..++.+.+. ...+ .+...+|++|++...+
T Consensus 422 d~~tG~~lW~~~~~~~~-~a~P-~~~~~~g~~yv~~~~g 458 (488)
T cd00216 422 DATTGKELWKFRTPSGI-QATP-MTYEVNGKQYVGVMVG 458 (488)
T ss_pred ECCCCceeeEEECCCCc-eEcC-EEEEeCCEEEEEEEec
Confidence 96 49998888765432 1222 2224588999998665
No 142
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.37 E-value=1.2 Score=39.90 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=29.6
Q ss_pred CceEEEEeCCCCeEEEEecC-cc--------ccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 48 HGQLLRYDPSSKQVSIVLEG-LY--------FANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~-~~--------~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.+.|+.+|..+|+.....+. .. ...++++..++ .+|+... .+.|+.++.+.
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~-~V~v~~~-~g~v~AlD~~T 129 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR-KVFFGTF-DGRLVALDAET 129 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC-eEEEecC-CCeEEEEECCC
Confidence 47788888876754322111 10 11244443223 5888864 67899999864
No 143
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.35 E-value=0.81 Score=39.27 Aligned_cols=31 Identities=19% Similarity=-0.069 Sum_probs=25.5
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
-..--.|+++|||+ ...+-...+.|..+++.
T Consensus 157 ~~WVlcvawsPDgk-~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGK-KIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccEEEEEEECCCcc-hhhccccCCeEEEecCC
Confidence 44556899999998 66777889999999986
No 144
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.30 E-value=0.44 Score=42.33 Aligned_cols=65 Identities=5% Similarity=-0.179 Sum_probs=47.4
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC----CCCCceEECCCCCEEEEEecC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP----GGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~ 135 (224)
..+.-+|+|+.+..|++.+..+.+..|+.+..+ ...+|+..-.. -.|.-.++++||.+..+....
T Consensus 270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred eeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 345567999998899999999999989887532 44556543211 257899999999997666555
No 145
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=1.4 Score=36.61 Aligned_cols=105 Identities=8% Similarity=0.108 Sum_probs=65.3
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EE-ecCccccceeEEecCCCEEEEEeCCC
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IV-LEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~-~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
..+++.+|+.+-.|+... ....|..++.+ |++- .+ .+++.-|.+|++-.+|+ ..+++-..
T Consensus 88 vS~LTynp~~rtLFav~n----------------~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~ 149 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTN----------------KPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERD 149 (316)
T ss_pred ccceeeCCCcceEEEecC----------------CCceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhc
Confidence 567888887754444322 23467788876 4433 22 46788899999998876 55666667
Q ss_pred CeEEEEEccCC-Ccccc---eEeeccCC---CCCCceEECCCC-CEEEEEecC
Q 046107 91 FRCIKHWLKLG-DKRDR---EIFIENLP---GGPDNINLAPDG-SFWISLIKM 135 (224)
Q Consensus 91 ~~I~~~~~~~~-~~~~~---~~~~~~~~---~~p~~i~~d~dG-~l~va~~~~ 135 (224)
++++.+..+.. ..... ++-.+... ....|+|.|+.. ++|++-...
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC
Confidence 88888887621 11111 11111111 246899999975 588886654
No 146
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.12 E-value=3.2 Score=39.62 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=56.7
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----Ce----EEEEecCccccceeEEecCCCEEE
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----KQ----VSIVLEGLYFANGVALSKHGDFVV 84 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g~----~~~~~~~~~~pngia~~~dg~~Ly 84 (224)
...++++++|++++|-. .++.|..++... +. ............++++++..+..+
T Consensus 486 V~~i~fs~dg~~latgg-----------------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 486 VCAIGFDRDGEFFATAG-----------------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred EEEEEECCCCCEEEEEe-----------------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEE
Confidence 45677888888766632 245555555321 00 001111223456889987533355
Q ss_pred EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecC
Q 046107 85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKM 135 (224)
Q Consensus 85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~ 135 (224)
++....+.|..|++.... ....+. .-.+....+++.+ +|+++++....
T Consensus 549 as~~~Dg~v~lWd~~~~~--~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQ--LVTEMK-EHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred EEEeCCCeEEEEECCCCe--EEEEec-CCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 666677899999886421 111221 1123456788885 67777766655
No 147
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.12 E-value=2.3 Score=39.19 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=55.2
Q ss_pred cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~ 88 (224)
+..+.++++.+||. +.++....+ ........||..+.. +..+.+..+. .-....|+|||+.||+...
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~----------~~~d~~s~Lwv~~~g-g~~~~lt~g~-~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGR----------GAPDPASSLWVGPLG-GVAVQVLEGH-SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecC----------CCCCcceEEEEEeCC-CcceeeecCC-CCCCceECCCCCceEEEec
Confidence 45667788888884 444432100 001234578888864 4445444333 2556789999887876642
Q ss_pred -----------CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107 89 -----------WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127 (224)
Q Consensus 89 -----------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~ 127 (224)
.+++|+..+++++. .+. ...+.+..+.+.+||.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge---~~~---~~~g~Issl~wSpDG~ 460 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASA---VAS---RVPGPISELQLSRDGV 460 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCch---hhh---ccCCCcCeEEECCCCC
Confidence 22345544444321 111 1234578888888887
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.12 E-value=0.38 Score=42.58 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=45.6
Q ss_pred Cccccc-eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecC
Q 046107 67 GLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~ 135 (224)
....|. ||+++|-...|+|+-....+|+.||..... ......+ ..| .-+++.++|.++++....
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y----~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTY----SHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccccc-ccceeee----cCCcceeeecCCceEEEeecCC
Confidence 345564 999999776799999999999999986321 1122222 233 678999999888887666
No 149
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.08 E-value=0.13 Score=29.02 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=28.3
Q ss_pred CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEe
Q 046107 22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALS 77 (224)
Q Consensus 22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~ 77 (224)
+.||+++. ..+.|..+|..+++......-...|.+|+++
T Consensus 4 ~~lyv~~~-----------------~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNS-----------------GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CEEEEEeC-----------------CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 36999984 3578999998766655445556889998875
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.01 E-value=1.1 Score=40.76 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=26.2
Q ss_pred EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107 172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASIN 214 (224)
Q Consensus 172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~ 214 (224)
+.+..+|.+ |+.+-.+..+.+..-+.++. ..+|++|+....
T Consensus 482 G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty--~~~G~qYv~~~~ 523 (527)
T TIGR03075 482 GYFKAFDAKTGEELWKFKTGSGIVGPPVTY--EQDGKQYVAVLS 523 (527)
T ss_pred CeEEEEECCCCCEeEEEeCCCCceecCEEE--EeCCEEEEEEEe
Confidence 678888865 99988887654321112221 358999998754
No 151
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.94 E-value=1.4 Score=35.98 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=54.0
Q ss_pred eEEEEeCCCCeEEEEe-------cCccccceeEEecCC---C-EEEEEeCCCCeEEEEEcc-C--CCcccc--eEeeccC
Q 046107 50 QLLRYDPSSKQVSIVL-------EGLYFANGVALSKHG---D-FVVVCESWKFRCIKHWLK-L--GDKRDR--EIFIENL 113 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~~~dg---~-~Lyv~~~~~~~I~~~~~~-~--~~~~~~--~~~~~~~ 113 (224)
.+|.+||+.+.++.+. +....+.|+|+..+- . ++||+.. .+.|..|.+- + ++.+.. +.| ..
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~f--k~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQF--KI 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEee--ec
Confidence 4788888866666543 346678899987643 2 4566654 4889888874 2 122222 222 14
Q ss_pred CCCCCceEECCC-CCEEEEEecC
Q 046107 114 PGGPDNINLAPD-GSFWISLIKM 135 (224)
Q Consensus 114 ~~~p~~i~~d~d-G~l~va~~~~ 135 (224)
+..-.||..|.+ |.+|++....
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred CCcccceeeccccceEEEeeccc
Confidence 557789999876 8999998764
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.92 E-value=2.7 Score=39.84 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=32.6
Q ss_pred EEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 51 LLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 51 l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
|-.++......+....+...|. ++.++|.+++|-|+. ..|.|..|+++.
T Consensus 120 vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQD 169 (933)
T ss_pred EEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEccc
Confidence 3334433233344455777776 899999998665554 578999999875
No 153
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.83 E-value=1.3 Score=42.79 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=100.6
Q ss_pred ccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEE
Q 046107 7 CHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVV 85 (224)
Q Consensus 7 ~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv 85 (224)
+...-.+.++++|- .+++|++|.. .....+..++... ....+...+..|..++++|-..++|+
T Consensus 476 ~~g~~~~~~lavD~~~~~~y~tDe~---------------~~~i~v~~~~g~~-~~vl~~~~l~~~r~~~v~p~~g~~~w 539 (877)
T KOG1215|consen 476 GDGLCIPEGLAVDWIGDNIYWTDEG---------------NCLIEVADLDGSS-RKVLVSKDLDLPRSIAVDPEKGLMFW 539 (877)
T ss_pred ccCccccCcEEEEeccCCceecccC---------------CceeEEEEccCCc-eeEEEecCCCCccceeeccccCeeEE
Confidence 33455678899987 4689999954 1223344444331 23334455689999999998888999
Q ss_pred EeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107 86 CESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL 163 (224)
Q Consensus 86 ~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 163 (224)
++.. ..+|.|-.++|. ...........-|+|+++|-. ..+|-++....
T Consensus 540 td~~~~~~i~ra~~dg~---~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~--------------------------- 589 (877)
T KOG1215|consen 540 TDWGQPPRIERASLDGS---ERAVLVTNGILWPNGLTIDYETDRLYWADAKLD--------------------------- 589 (877)
T ss_pred ecCCCCchhhhhcCCCC---CceEEEeCCccCCCcceEEeecceeEEEcccCC---------------------------
Confidence 9976 346777777763 233333222357999999964 55777666541
Q ss_pred hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEE
Q 046107 164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGK 220 (224)
Q Consensus 164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~ 220 (224)
..+.+++.+|+..+ ...... ++.+-.+....+++|-+.+....+.+
T Consensus 590 --------~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~~~iyw~d~~~~~~~~ 635 (877)
T KOG1215|consen 590 --------YTIESANMDGQNRR-VVDSED--LPHPFGLSVFEDYIYWTDWSNRAISR 635 (877)
T ss_pred --------cceeeeecCCCceE-Eecccc--CCCceEEEEecceeEEeeccccceEe
Confidence 35778888887765 222221 34455666778888888887765544
No 154
>PRK13684 Ycf48-like protein; Provisional
Probab=94.79 E-value=2.3 Score=36.26 Aligned_cols=84 Identities=7% Similarity=-0.065 Sum_probs=41.6
Q ss_pred CceEEEEeCCCC-eEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-C--CCCCCceEE
Q 046107 48 HGQLLRYDPSSK-QVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-L--PGGPDNINL 122 (224)
Q Consensus 48 ~g~l~~~~~~~g-~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~--~~~p~~i~~ 122 (224)
.|.+++-..+++ .++.... .....+++++.++++ +|+... .+.+..-..+++.. .+..... . .....++++
T Consensus 192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~~~~s~d~G~s--W~~~~~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQIRFNDPDDLES--WSKPIIPEITNGYGYLDLAY 267 (334)
T ss_pred CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEEEEccCCCCCc--cccccCCccccccceeeEEE
Confidence 344555421222 3554432 234567899999887 666543 34443223443221 1111100 0 012456778
Q ss_pred CCCCCEEEEEecC
Q 046107 123 APDGSFWISLIKM 135 (224)
Q Consensus 123 d~dG~l~va~~~~ 135 (224)
.+++.+|++...+
T Consensus 268 ~~~~~~~~~G~~G 280 (334)
T PRK13684 268 RTPGEIWAGGGNG 280 (334)
T ss_pred cCCCCEEEEcCCC
Confidence 8889999876543
No 155
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.77 E-value=0.37 Score=41.63 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=41.0
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~ 136 (224)
.....+|+|.+||. |..+-....-=..+|+.. +....+.++-....-+++++|+|....+....+
T Consensus 303 s~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRt---gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRT---GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ccccceeEecCCCc-eeeccCccchhheeeccc---CcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 34457999999997 766665543333445543 233344443223457899999998777766664
No 156
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.64 E-value=0.17 Score=44.34 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=35.8
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcc--cceEeecc--------------CCCCCCceEECCCCC-EEEEEe
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKR--DREIFIEN--------------LPGGPDNINLAPDGS-FWISLI 133 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~--------------~~~~p~~i~~d~dG~-l~va~~ 133 (224)
+.-|.+|.|.++|||++...+.|..||+.+..-. .-++++.+ +.+.|.=+.+.-||+ +|+++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 4688899999999999999999999999753211 11333321 235688888999996 999875
Q ss_pred c
Q 046107 134 K 134 (224)
Q Consensus 134 ~ 134 (224)
-
T Consensus 394 L 394 (461)
T PF05694_consen 394 L 394 (461)
T ss_dssp -
T ss_pred c
Confidence 4
No 157
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.33 Score=41.47 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=57.7
Q ss_pred CCCceEEEEeCCCCeEEEEe--cCccc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEE
Q 046107 46 EPHGQLLRYDPSSKQVSIVL--EGLYF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL 122 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~~~~--~~~~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 122 (224)
...+.|-.||++++. +.+. +-... -..+.+.|+|++||++++ .+.+..||..+..+ ...++++..|.+..|.+
T Consensus 223 T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHC 298 (412)
T ss_pred ecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCcee--eccccCCccCCcceEEE
Confidence 345667778876432 2222 11222 357889999999999996 47899999986433 22334456789999999
Q ss_pred CCCCCEEEEEecC
Q 046107 123 APDGSFWISLIKM 135 (224)
Q Consensus 123 d~dG~l~va~~~~ 135 (224)
.+.+.+....+-.
T Consensus 299 hp~~~~las~GLD 311 (412)
T KOG3881|consen 299 HPTHPVLASCGLD 311 (412)
T ss_pred cCCCceEEeeccc
Confidence 9887777765544
No 158
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.59 E-value=2.3 Score=36.55 Aligned_cols=68 Identities=19% Similarity=0.093 Sum_probs=40.4
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeC
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY---FANGVALSKHGDFVVVCES 88 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~---~pngia~~~dg~~Lyv~~~ 88 (224)
..+...+..+|+||+++. .|.++++|.++|+......... .. +-++-.|+ .+|+..
T Consensus 102 ~~~~~~~~~~G~i~~g~~------------------~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~-~v~~~s- 160 (370)
T COG1520 102 QLSGPILGSDGKIYVGSW------------------DGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDG-TVYVGT- 160 (370)
T ss_pred eccCceEEeCCeEEEecc------------------cceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCc-EEEEec-
Confidence 334445555788888863 3589999996576554322222 12 22333455 477775
Q ss_pred CCCeEEEEEccC
Q 046107 89 WKFRCIKHWLKL 100 (224)
Q Consensus 89 ~~~~I~~~~~~~ 100 (224)
..+.++.++.+.
T Consensus 161 ~~g~~~al~~~t 172 (370)
T COG1520 161 DDGHLYALNADT 172 (370)
T ss_pred CCCeEEEEEccC
Confidence 567888888873
No 159
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.55 E-value=1.1 Score=36.07 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=52.9
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-C-------eEEEE-ecCccccceeEEecCCCE
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-K-------QVSIV-LEGLYFANGVALSKHGDF 82 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g-------~~~~~-~~~~~~pngia~~~dg~~ 82 (224)
.-..|+++++|.||... ..|.|+|..+.. + .-+.+ ..+-....-|-++++|-
T Consensus 82 ~F~~i~~d~~G~LYaV~------------------~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv- 142 (229)
T PF14517_consen 82 SFKFIFFDPTGVLYAVT------------------PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV- 142 (229)
T ss_dssp G-SEEEE-TTS-EEEEE------------------TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--
T ss_pred ceeEEEecCCccEEEec------------------cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-
Confidence 34478888899888775 357788877532 1 11233 34555567888899996
Q ss_pred EEEEeCCCCeEEEE-EccCCC--cccceEeec-cCCCCCCceEECCCCCEEEEEecC
Q 046107 83 VVVCESWKFRCIKH-WLKLGD--KRDREIFIE-NLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 83 Lyv~~~~~~~I~~~-~~~~~~--~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
||.-+.. +++++. .+++.. -......+. ..-..+.-|...++|+||.....+
T Consensus 143 LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~~G 198 (229)
T PF14517_consen 143 LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKSNG 198 (229)
T ss_dssp EEEEETT-E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-ETT
T ss_pred EEEEcCC-CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEecCC
Confidence 9988854 477777 454321 001111221 111246778888999999984443
No 160
>PHA02713 hypothetical protein; Provisional
Probab=94.53 E-value=2.5 Score=38.63 Aligned_cols=126 Identities=5% Similarity=-0.007 Sum_probs=67.8
Q ss_pred ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----------------------CCeEEEEEccCCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----------------------KFRCIKHWLKLGD 102 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----------------------~~~I~~~~~~~~~ 102 (224)
..+.++|+.+++|+.+.. +..+ .+++. -+| .|||.-.. ...+.+|++...
T Consensus 367 ~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td- 442 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN- 442 (557)
T ss_pred ceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-
Confidence 468899998888876542 2222 13332 245 59987432 246888888642
Q ss_pred cccceEeeccC-CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC
Q 046107 103 KRDREIFIENL-PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG 181 (224)
Q Consensus 103 ~~~~~~~~~~~-~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 181 (224)
......... +...-++++ -+|.||+..+..... .....|.++||+-
T Consensus 443 --~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~------------------------------~~~~~ve~Ydp~~ 489 (557)
T PHA02713 443 --IWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEK------------------------------NVKTCIFRYNTNT 489 (557)
T ss_pred --eEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCC------------------------------ccceeEEEecCCC
Confidence 122211111 112223443 468999986543100 0004678999985
Q ss_pred --cEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107 182 --SIIREFNDPNAKNISFVTSALEFQGNLYLASIN 214 (224)
Q Consensus 182 --~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~ 214 (224)
++...-..|... ....++..+|+||+..-.
T Consensus 490 ~~~W~~~~~m~~~r---~~~~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 490 YNGWELITTTESRL---SALHTILHDNTIMMLHCY 521 (557)
T ss_pred CCCeeEccccCccc---ccceeEEECCEEEEEeee
Confidence 565443333321 223455678999997643
No 161
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.46 E-value=3.1 Score=36.40 Aligned_cols=132 Identities=6% Similarity=-0.073 Sum_probs=72.1
Q ss_pred CceEEEEeCCCCe-EEEEe-cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-C---CCCCCceE
Q 046107 48 HGQLLRYDPSSKQ-VSIVL-EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-L---PGGPDNIN 121 (224)
Q Consensus 48 ~g~l~~~~~~~g~-~~~~~-~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~---~~~p~~i~ 121 (224)
.|.+++-+..+.. ++.+. .......++++.+||. ++++.. .+.|++-..++. ..+...|... . ...+.++.
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~ 334 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLTR-GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVG 334 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEeC-CceEEEecCCCC-cccccceeecccCCCCcceEEEE
Confidence 4677775554332 34443 2344557888999987 666653 455665544441 1111122211 1 11356788
Q ss_pred ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEE
Q 046107 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSA 201 (224)
Q Consensus 122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~ 201 (224)
+.+++++|++...+ .+++-..+|+.-......++-. .....+
T Consensus 335 ~~~d~~~~a~G~~G-------------------------------------~v~~s~D~G~tW~~~~~~~~~~-~~ly~v 376 (398)
T PLN00033 335 YRSKKEAWAAGGSG-------------------------------------ILLRSTDGGKSWKRDKGADNIA-ANLYSV 376 (398)
T ss_pred EcCCCcEEEEECCC-------------------------------------cEEEeCCCCcceeEccccCCCC-cceeEE
Confidence 88899999987654 5667777787644443222211 122334
Q ss_pred E-EECCEEEEEeCCCCeEEEe
Q 046107 202 L-EFQGNLYLASINSNFIGKL 221 (224)
Q Consensus 202 ~-~~~g~lyv~~~~~~~i~~~ 221 (224)
. .++++.|+....+ .|.|+
T Consensus 377 ~f~~~~~g~~~G~~G-~il~~ 396 (398)
T PLN00033 377 KFFDDKKGFVLGNDG-VLLRY 396 (398)
T ss_pred EEcCCCceEEEeCCc-EEEEe
Confidence 4 3568888887654 35443
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.27 E-value=2.9 Score=35.21 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 46 EPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
-.+|+|.-+|..+-.+..+.++.-.| ..++||+||+ ..++.+....|..+|+.
T Consensus 42 c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLL 95 (405)
T ss_pred ccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEecc
Confidence 35789999998765555455565566 6899999997 77777888999999985
No 163
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.24 E-value=0.54 Score=43.39 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=56.1
Q ss_pred eEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCE
Q 046107 50 QLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l 128 (224)
+|=-||..+|...++..+...| ..++++|+|++| ++-...+.|..||+..+.. ...+.+. .+..+.+.+..||++
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNV 633 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCE
Confidence 4444555555555556677666 589999999744 3334567888898864321 1122222 456788999999999
Q ss_pred EEEEecCCc
Q 046107 129 WISLIKMNS 137 (224)
Q Consensus 129 ~va~~~~~~ 137 (224)
+++.+..++
T Consensus 634 Lasgg~Dns 642 (707)
T KOG0263|consen 634 LASGGADNS 642 (707)
T ss_pred EEecCCCCe
Confidence 999988853
No 164
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.23 E-value=1.5 Score=38.03 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred eEEEEeCCCCeEEEEe-cC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107 50 QLLRYDPSSKQVSIVL-EG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~-~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~ 127 (224)
.++.+|.++|...... .+ ...+...+|-|||. =+|+-+..+.|..++.+|...+..+-. ..+ ...++++.+||.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~-~v~dlait~Dgk 367 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGV--RDP-KVHDLAITYDGK 367 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhccccc--ccc-eeEEEEEcCCCc
Confidence 4666777666544332 22 23345789999996 477777788999999988543333221 112 357899999998
Q ss_pred EEEEEec
Q 046107 128 FWISLIK 134 (224)
Q Consensus 128 l~va~~~ 134 (224)
..++...
T Consensus 368 ~vl~v~~ 374 (519)
T KOG0293|consen 368 YVLLVTV 374 (519)
T ss_pred EEEEEec
Confidence 5555443
No 165
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.23 E-value=5.3 Score=38.13 Aligned_cols=86 Identities=10% Similarity=-0.025 Sum_probs=45.0
Q ss_pred CCCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 46 EPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
..+|.|..+|..++..............+++.+ +|. ++++-+..+.|..|++..... ....+. ........+.+.
T Consensus 595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~-~~~~~~-~h~~~V~~v~f~- 670 (793)
T PLN00181 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKL-PLCTMI-GHSKTVSYVRFV- 670 (793)
T ss_pred cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCc-cceEec-CCCCCEEEEEEe-
Confidence 346667777765443322222223445677754 566 555666788999999864211 111221 111233556664
Q ss_pred CCCEEEEEecC
Q 046107 125 DGSFWISLIKM 135 (224)
Q Consensus 125 dG~l~va~~~~ 135 (224)
++..+++....
T Consensus 671 ~~~~lvs~s~D 681 (793)
T PLN00181 671 DSSTLVSSSTD 681 (793)
T ss_pred CCCEEEEEECC
Confidence 56655555544
No 166
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.21 E-value=2.7 Score=38.99 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=86.4
Q ss_pred eEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 16 v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
++++++|.+.+|.- ...|-.+|-++++.... .+....-..++++||++.||.+. .+..
T Consensus 25 ~~~s~nG~~L~t~~------------------~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~l 85 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC------------------GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQL 85 (775)
T ss_pred eeECCCCCEEEEec------------------CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccce
Confidence 78889998888752 23466677666655311 22345567899999988665554 5566
Q ss_pred EEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCce
Q 046107 93 CIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAA 171 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 171 (224)
+..|.+..++. .+.|.. ....| -.|++++-|.+..+.+..
T Consensus 86 lrv~~L~tgk~--irswKa-~He~Pvi~ma~~~~g~LlAtggaD------------------------------------ 126 (775)
T KOG0319|consen 86 LRVWSLPTGKL--IRSWKA-IHEAPVITMAFDPTGTLLATGGAD------------------------------------ 126 (775)
T ss_pred EEEEEcccchH--hHhHhh-ccCCCeEEEEEcCCCceEEecccc------------------------------------
Confidence 77777764321 122221 11223 689999988666655544
Q ss_pred EEEEEECCCC-cEEEEEeCCCCCcccceeEEEEECC---EEEEEeCCCCeEEEeeC
Q 046107 172 AKVVKVSANG-SIIREFNDPNAKNISFVTSALEFQG---NLYLASINSNFIGKLPL 223 (224)
Q Consensus 172 ~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~~g---~lyv~~~~~~~i~~~~~ 223 (224)
++|...|-++ .-+-.+....| .++.++++.. .|.++....+.+..+++
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gG----vVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGG----VVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCc----eEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 5666666443 44455655434 3556665543 34466666666666655
No 167
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.15 E-value=1.5 Score=37.48 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=41.3
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
..+++.+||..|.-+...+..|..++++.+. ...+.-...+....+.+.|||.+++|..-.
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 4789999998565555677889999997532 212221123455788999999977776554
No 168
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=94.12 E-value=0.18 Score=28.42 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=26.1
Q ss_pred cccccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC
Q 046107 8 HLIRFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS 57 (224)
Q Consensus 8 ~~~~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 57 (224)
..+..|+++++++. +.+|++|.. ...+.+.+.+
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~ 39 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLD 39 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCC
Confidence 47889999999986 579999965 3667777765
No 169
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.09 E-value=2.7 Score=34.26 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=35.2
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.-++.+.+++||++|-+++ ...|.-++++. ++..+.+ ..|.....-.+.|+-++|||.+..
T Consensus 185 s~VtSlEvs~dG~ilTia~--gssV~Fwdaks--f~~lKs~--k~P~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAY--GSSVKFWDAKS--FGLLKSY--KMPCNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred CCCcceeeccCCCEEEEec--CceeEEecccc--ccceeec--cCccccccccccCCCceEEecCcc
Confidence 3457899999998665554 34566566642 1112211 123333344455777888887766
No 170
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.95 E-value=1.3 Score=39.02 Aligned_cols=82 Identities=21% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe--EEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR--CIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~--I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
+.-.||+++.++++++.+.........-.++|||++|-+.....+. |..+++..+. ..+++.. ...-..-.+++
T Consensus 304 G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~--~~~~lt~--~~~~e~ps~~~ 379 (425)
T COG0823 304 GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG--KIRILTS--TYLNESPSWAP 379 (425)
T ss_pred CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC--cEEEccc--cccCCCCCcCC
Confidence 3447999999877776665555555577899999988766654555 6666654311 1333321 11223445566
Q ss_pred CCCEEEEE
Q 046107 125 DGSFWISL 132 (224)
Q Consensus 125 dG~l~va~ 132 (224)
+|...+-.
T Consensus 380 ng~~i~~~ 387 (425)
T COG0823 380 NGRMIMFS 387 (425)
T ss_pred CCceEEEe
Confidence 66644433
No 171
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.95 E-value=3.3 Score=34.76 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=52.0
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
.|++++.|.|.|-++... ++.+--++.-.|+...+..-...+.-+.|+|.|.+.+|.- +++
T Consensus 130 Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~ 190 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNK 190 (362)
T ss_pred cceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccE
Confidence 578888888887777532 2222222222233332333345566699999999777775 456
Q ss_pred EEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEe
Q 046107 93 CIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLI 133 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~ 133 (224)
|-.|.++.. .+|... .+..+-.+.++..+.+.++..
T Consensus 191 i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 191 IDIYQLDNA-----SVFREIENPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred EEEEecccH-----hHhhhhhccccceeeeecCCceEEEecC
Confidence 666665432 222211 123345555555555555543
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.89 E-value=2.5 Score=36.14 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEE-Ecc-CCCcccceEeecc----CCCCCCc
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKH-WLK-LGDKRDREIFIEN----LPGGPDN 119 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~-~~~-~~~~~~~~~~~~~----~~~~p~~ 119 (224)
..|.|+.+|..+-+..........+ ..+|+++||. +..+.+.+|.|.|+ ... |. .+++. .+.....
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~------kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ------KLYEFRRGTYPVSIYS 223 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc------EeeeeeCCceeeEEEE
Confidence 3688888887643333334455554 5899999997 77777888886664 443 32 22222 1235578
Q ss_pred eEECCCCCEEEEEecCC
Q 046107 120 INLAPDGSFWISLIKMN 136 (224)
Q Consensus 120 i~~d~dG~l~va~~~~~ 136 (224)
+++++++.+..+.....
T Consensus 224 L~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTE 240 (391)
T ss_pred EEECCCCCeEEEecCCC
Confidence 99999999888877653
No 173
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.85 E-value=4.1 Score=35.46 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=46.8
Q ss_pred ceEEEEeCCCCeEEEEecCccccc--eeEEecCCCEEEEEeCC----------CCeEEEEEccCCCcccceEeeccC-CC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFAN--GVALSKHGDFVVVCESW----------KFRCIKHWLKLGDKRDREIFIENL-PG 115 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pn--gia~~~dg~~Lyv~~~~----------~~~I~~~~~~~~~~~~~~~~~~~~-~~ 115 (224)
-.|+.+|..+|+. +.+.+..+. +++|.+|++.+|.+... ..+|++..+.... .+..++++.. ..
T Consensus 150 ~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 150 YTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-SEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G-GG-EEEEC-TTCT
T ss_pred EEEEEEECCCCcC--cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh-HhCeeEEeecCCC
Confidence 4588888876743 233333332 39999998888777633 3457877775422 2223444321 11
Q ss_pred C-CCceEECCCCCEEEEEecC
Q 046107 116 G-PDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 116 ~-p~~i~~d~dG~l~va~~~~ 135 (224)
. --++..++||++.+-....
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEES
T ss_pred cEEEEEEecCcccEEEEEEEc
Confidence 2 2367788999865544443
No 174
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=5.3 Score=36.72 Aligned_cols=134 Identities=12% Similarity=0.158 Sum_probs=79.7
Q ss_pred CceEEEEeCCCCeEEEE-ecC----ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceE
Q 046107 48 HGQLLRYDPSSKQVSIV-LEG----LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNIN 121 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~-~~~----~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~ 121 (224)
+-.|||+.++. .++.. .+. .....-|.++-|++.++++.-+...+..+...+....+...+... .-....-|+
T Consensus 404 ~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 404 RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 44688998874 33322 222 233457888888887887776777888888765432222222211 113457899
Q ss_pred ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccceeE
Q 046107 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVTS 200 (224)
Q Consensus 122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t~ 200 (224)
+.++|++.++.... +.|+.++-++.....+. ..+ ..+|.
T Consensus 483 ~SsdG~yiaa~~t~------------------------------------g~I~v~nl~~~~~~~l~~rln----~~vTa 522 (691)
T KOG2048|consen 483 VSSDGNYIAAISTR------------------------------------GQIFVYNLETLESHLLKVRLN----IDVTA 522 (691)
T ss_pred EcCCCCEEEEEecc------------------------------------ceEEEEEcccceeecchhccC----cceee
Confidence 99999988887765 67888887765544443 222 12333
Q ss_pred EEE---ECCEEEEEeCCCCeEEEeeC
Q 046107 201 ALE---FQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 201 ~~~---~~g~lyv~~~~~~~i~~~~~ 223 (224)
+.. .-++|-++. .+|.+..+++
T Consensus 523 ~~~~~~~~~~lvvat-s~nQv~efdi 547 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVAT-SNNQVFEFDI 547 (691)
T ss_pred eeccccccCcEEEEe-cCCeEEEEec
Confidence 332 235555554 3466666654
No 175
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.78 E-value=0.68 Score=39.73 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=60.4
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeC
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCES 88 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~ 88 (224)
....|.|.+.|||+...+-+. +.+|--++.++|+.-....+ ..--.-|+++.|.+ |.|+.+
T Consensus 367 q~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S 428 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS 428 (480)
T ss_pred hhheeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcC
Confidence 345678888888765555322 23343445545553322222 33346789999985 999998
Q ss_pred CCCeEEEEEccCCCcccceEeeccCCCC---CCceEECCCCCEEEEEec
Q 046107 89 WKFRCIKHWLKLGDKRDREIFIENLPGG---PDNINLAPDGSFWISLIK 134 (224)
Q Consensus 89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~dG~l~va~~~ 134 (224)
....+-.+++... +. ..++||. ...+.+.+||...++.+.
T Consensus 429 kDsTLKvw~V~tk-----Kl-~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 429 KDSTLKVWDVRTK-----KL-KQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred CCceEEEEEeeee-----ee-cccCCCCCceEEEEEecCCCceeecCCC
Confidence 8888888887542 22 2245553 345556688877665444
No 176
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.73 E-value=1.3 Score=39.73 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=42.1
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
....+|.++++|||++|-+. +..+.+..|+-+.-.+ ..++ ....+..-.+++.+||++.+..+..
T Consensus 289 ~~g~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt~eL--lg~m-kSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATV-SQDGFLRIFDFDTQEL--LGVM-KSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred ccccccceeEcCCCceEEEE-ecCceEEEeeccHHHH--HHHH-HhhccceEEEEEcCCccEEEecCCc
Confidence 34478999999999876444 3567777777642110 0111 1123456788999999988887766
No 177
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=4.9 Score=36.13 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=66.5
Q ss_pred CceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAP 124 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~ 124 (224)
.-.|+-++.++.... +.-...+| +.+.|+++++..-|+. .+-.++..|++++. ++.+ .+..| +.+-+.|
T Consensus 250 Eq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~d-f~egpRN~~~fnp 321 (566)
T KOG2315|consen 250 EQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFD-FPEGPRNTAFFNP 321 (566)
T ss_pred cceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEe-CCCCCccceEECC
Confidence 346777877632222 32223445 6899999998665554 77889999999762 3343 33345 6677899
Q ss_pred CCCE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEE
Q 046107 125 DGSF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIR 185 (224)
Q Consensus 125 dG~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~ 185 (224)
.|++ .+|.++.-..-+++.-. +. ++.+.+.. .....++...|||+..-
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv-~n-~K~i~~~~-----------a~~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDV-PN-RKLIAKFK-----------AANTTVFEWSPDGEYFL 370 (566)
T ss_pred CCCEEEEeecCCCCCceEEEec-cc-hhhccccc-----------cCCceEEEEcCCCcEEE
Confidence 9994 45555542222222111 11 23222211 11267788888887643
No 178
>PRK10115 protease 2; Provisional
Probab=93.66 E-value=6.4 Score=37.07 Aligned_cols=48 Identities=4% Similarity=0.037 Sum_probs=30.5
Q ss_pred eEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107 50 QLLRYDPSSKQ--VSIVLEGLYFANGVALSKHGDFVVVCESW-----KFRCIKHWLKL 100 (224)
Q Consensus 50 ~l~~~~~~~g~--~~~~~~~~~~pngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~ 100 (224)
.|+.+|..+|+ .+. .++.. .+++|++|++.||++... ..+|++.++.+
T Consensus 154 ~l~v~d~~tg~~l~~~-i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 154 GIRFRNLETGNWYPEL-LDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEEECCCCCCCCcc-ccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 57777776554 121 12222 469999999888777432 25788888864
No 179
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=93.64 E-value=0.094 Score=29.58 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=16.2
Q ss_pred ccccceEEecCCcEEEEe
Q 046107 11 RFANDVIEASDGSLYITV 28 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~ 28 (224)
..+++|++|++|++|++=
T Consensus 13 ~~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eeEEEEEECCCCCEEEEE
Confidence 569999999999999984
No 180
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.59 E-value=3.9 Score=34.39 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=41.5
Q ss_pred CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.|.||+=.-.+..++.+..+ ....+.+..++||+++.|+ ..+.+++-.-.|.. ..+..-.........|.++++|
T Consensus 123 ~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 123 RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS
T ss_pred CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCc--cceEEccCccceehhceecCCC
Confidence 46676655443456665433 4445678888999755555 55666654433311 1222221223467899999999
Q ss_pred CEEEEEecC
Q 046107 127 SFWISLIKM 135 (224)
Q Consensus 127 ~l~va~~~~ 135 (224)
++|+...++
T Consensus 199 ~lw~~~~Gg 207 (302)
T PF14870_consen 199 NLWMLARGG 207 (302)
T ss_dssp -EEEEETTT
T ss_pred CEEEEeCCc
Confidence 999987544
No 181
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.54 E-value=4.8 Score=35.25 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=39.7
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
-...+|+|||- ||.+-+..+.|-.|++... .+...|- +-.+-..-++|..+|.+.+.....
T Consensus 350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~--~~~a~Fp-ght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ--TNVAKFP-GHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred eEEeeEcCCce-EEeccCCCceEEEEEcCCc--cccccCC-CCCCceeEEEeccCceEEEEEecC
Confidence 45789999994 8999898899988988631 1222232 122345788898777555554444
No 182
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.40 E-value=1.6 Score=40.96 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=65.8
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
..++++|.-+++.++-. .+|.+..+|.+++....-..-...+.+|..+.... +++.......
T Consensus 496 V~gla~D~~n~~~vsa~-----------------~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~ 557 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAG-----------------ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFS 557 (910)
T ss_pred eeEEEecCCCceEEEcc-----------------CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCcee
Confidence 34777776666666642 36888888876433222223445667888887665 7777777889
Q ss_pred EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 93 CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
|..+|....+ -.+.|- +-....+.+++.+||++.++..-.
T Consensus 558 I~vvD~~t~k--vvR~f~-gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 558 IRVVDVVTRK--VVREFW-GHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred EEEEEchhhh--hhHHhh-ccccceeeeEeCCCCcEEEEeecC
Confidence 9999875321 122222 223467899999999988877664
No 183
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=93.35 E-value=5.4 Score=38.00 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=37.1
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.+|+. ++. .|++.+..+.|.+|...-. +...++....--.+.++++.+|++.++....
T Consensus 60 ~~ia~--~s~-~f~~~s~~~tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD 117 (933)
T KOG1274|consen 60 SSIAC--YSN-HFLTGSEQNTVLRYKFPSG---EEDTILARFTLPIRDLAVSGSGKMIAAGSDD 117 (933)
T ss_pred EEEee--ccc-ceEEeeccceEEEeeCCCC---CccceeeeeeccceEEEEecCCcEEEeecCc
Confidence 34444 344 6777788999999987531 2222222222234899999999988887766
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.35 E-value=3.8 Score=35.44 Aligned_cols=86 Identities=8% Similarity=0.119 Sum_probs=56.2
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---CCCCCCce
Q 046107 44 EGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---LPGGPDNI 120 (224)
Q Consensus 44 ~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~~~~p~~i 120 (224)
....+..|..++-.+|+.-...+....-..+.|+.||+ ++++.....+|..+++..++ ++.+. ....|.-.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~-----~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT-----VVSEGVAHEGAKPARA 222 (472)
T ss_pred hccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc-----EeeecccccCCCccee
Confidence 33455667777766565333333344456889999997 88888888999999996432 22222 22356666
Q ss_pred EECCCCCEEEEEecC
Q 046107 121 NLAPDGSFWISLIKM 135 (224)
Q Consensus 121 ~~d~dG~l~va~~~~ 135 (224)
.+-.+|.+..+.+..
T Consensus 223 ifl~~g~i~tTGfsr 237 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSR 237 (472)
T ss_pred EEeccCceeeecccc
Confidence 777788877777665
No 185
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.30 E-value=1.3 Score=40.06 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=15.4
Q ss_pred cccccceEEecCCcEEEEeC
Q 046107 10 IRFANDVIEASDGSLYITVS 29 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~ 29 (224)
....|.+..|.+|.+|+++.
T Consensus 289 ~S~vnsL~~D~dGsLWv~t~ 308 (671)
T COG3292 289 VSTVNSLWLDTDGSLWVGTY 308 (671)
T ss_pred cccccceeeccCCCEeeecc
Confidence 45557788888999999863
No 186
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.23 E-value=1.4 Score=35.83 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=45.4
Q ss_pred Cccccc---eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 67 GLYFAN---GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pn---gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
....|. .-.++|+. .+||+-.....+++||-+.+. +...+..+-++-.-.+.+.|||.+|......
T Consensus 220 s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred eccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 345565 44588987 499999999999999987431 1222222334444778889999999887766
No 187
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.13 E-value=6 Score=35.20 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=21.0
Q ss_pred EEEEEEC--CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107 172 AKVVKVS--ANGSIIREFNDPNAKNISFVTSALEFQGNLYLAS 212 (224)
Q Consensus 172 ~~v~~~~--~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~ 212 (224)
+.|.-++ |+++++. +..|+|-.+..+-.....++++|-.+
T Consensus 444 ~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 444 GLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEec
Confidence 4554443 5666643 34566654444444444566777544
No 188
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.08 E-value=1.9 Score=36.90 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCC----CCeEEEEEcc-CCCcccceEeeccCCCCCC-c
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESW----KFRCIKHWLK-LGDKRDREIFIENLPGGPD-N 119 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~----~~~I~~~~~~-~~~~~~~~~~~~~~~~~p~-~ 119 (224)
+...|+.++.+++..+.+..+...-+ -+.++++++.||+.... ...|++++++ ++ ..+.+.. ..... .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~--~~~~~~~ 332 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC--EDGDHYS 332 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST--TSSTTEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC--CCCCceE
Confidence 46689999998776666555544444 46889999999988865 4589999987 52 3333321 12233 7
Q ss_pred eEECCCCCEEEEEecC
Q 046107 120 INLAPDGSFWISLIKM 135 (224)
Q Consensus 120 i~~d~dG~l~va~~~~ 135 (224)
..++++|+.++-...+
T Consensus 333 ~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEE-TTSSEEEEEEES
T ss_pred EEECCCCCEEEEEEcC
Confidence 9999999999887665
No 189
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.95 E-value=3.2 Score=35.98 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=40.7
Q ss_pred hhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEE-EEEeCC----CCeEEEEEccCC
Q 046107 39 YLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFV-VVCESW----KFRCIKHWLKLG 101 (224)
Q Consensus 39 ~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~L-yv~~~~----~~~I~~~~~~~~ 101 (224)
+.++++..+..+|+++|.++|+.+.+...-...+-+.++| |...| |+=+.. ..+||.++.+|.
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred HHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 4566777889999999999999998887777888888998 44445 444432 358899988764
No 190
>PRK13684 Ycf48-like protein; Provisional
Probab=92.90 E-value=5.3 Score=33.99 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=45.7
Q ss_pred CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.|.|++-+-.+..++.+..+ ....+++++.+++. |++-...+.+++-..+++. ..+...........++++.++|
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEECCCCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCC
Confidence 44566644433455554433 23456888888874 3333345677765333311 1222211122356788888899
Q ss_pred CEEEEEecC
Q 046107 127 SFWISLIKM 135 (224)
Q Consensus 127 ~l~va~~~~ 135 (224)
++|++...+
T Consensus 227 ~~~~vg~~G 235 (334)
T PRK13684 227 NLWMLARGG 235 (334)
T ss_pred CEEEEecCC
Confidence 998876544
No 191
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=92.90 E-value=5.1 Score=33.77 Aligned_cols=110 Identities=9% Similarity=0.108 Sum_probs=63.0
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhhhhccCh
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSK 147 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p 147 (224)
.+..++|..+...|+......=+.++... +...++... +...++...+|+.|++.++...+
T Consensus 110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK------------ 174 (405)
T KOG1273|consen 110 WGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK------------ 174 (405)
T ss_pred ceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccccccccccccccCCCCEEEEecCc------------
Confidence 47778886666777665444434444432 112233222 12356666899999977776666
Q ss_pred hHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccceeEEE-EECCEEEEEeCCCCeEEEeeC
Q 046107 148 NRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFVTSAL-EFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~-~~~g~lyv~~~~~~~i~~~~~ 223 (224)
|.+..++.+- +.+..+.... ...+-.+. ...|+.++.+....-|..|++
T Consensus 175 ------------------------Gkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 175 ------------------------GKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ------------------------ceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 7888888763 4555554322 12333333 346777777777666666654
No 192
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.65 E-value=4.8 Score=32.81 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=39.7
Q ss_pred ccceeEEecCCCEE-EEEe-CCCCeEEEEEccCCCcccceEeec------cCCCCCCceEECCCCCEEEEEecC
Q 046107 70 FANGVALSKHGDFV-VVCE-SWKFRCIKHWLKLGDKRDREIFIE------NLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~dg~~L-yv~~-~~~~~I~~~~~~~~~~~~~~~~~~------~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
....+++||||.++ ++.. ...++|+.-.+....-+....+.. ........+++-.++.|.+.....
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 44689999999988 4443 345677776653111121111111 112356789999999988887665
No 193
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.54 E-value=5.1 Score=35.38 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=57.5
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhh------hhhccCCCCceEEEEeCCCCeEEEEecC---ccccceeEEe--c
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYY------LDLVEGEPHGQLLRYDPSSKQVSIVLEG---LYFANGVALS--K 78 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~------~~~~~~~~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~--~ 78 (224)
..+-.|+...+.-++.+|.. |+...-+ .++....-..+|..+|-.+.+..+..+- ...|--|.+. |
T Consensus 180 ~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P 256 (461)
T PF05694_consen 180 QPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP 256 (461)
T ss_dssp ------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST
T ss_pred CCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC
Confidence 34455666666666666653 3322211 1122222233688888877777665532 2445455544 5
Q ss_pred CCCEEEEEeCCCCeEEEEEcc-CCCcccceEeecc------------C-------CCCCCceEECCCCC-EEEEEecC
Q 046107 79 HGDFVVVCESWKFRCIKHWLK-LGDKRDREIFIEN------------L-------PGGPDNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~~~------------~-------~~~p~~i~~d~dG~-l~va~~~~ 135 (224)
+..+=||....+..|++|-.+ ++. -..+.+++. . |+.+.+|.+..|++ ||++.+..
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 667789999999999998874 321 112222221 1 35678999998887 99999887
No 194
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.35 E-value=5.3 Score=32.61 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=67.5
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.+|.+-.+|...-......+-..--|.|+++|+-..|++++ .++.|+.+|+.... -..+...+ .......+++++||
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~-c~~~liPe-~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENS-CTHELIPE-DDTSIQSLTVMPDG 179 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCc-cccccCCC-CCcceeeEEEcCCC
Confidence 45665555654222222222223347999999877788887 46789999985321 11111111 11234677888888
Q ss_pred CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc-CCCceEEEEEECCCCcEEEEE
Q 046107 127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST-GKGAAAKVVKVSANGSIIREF 187 (224)
Q Consensus 127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~G~~~~~~ 187 (224)
.+.+|.....+- ++.+ .+++.. -+.++|+.+. ....|..--+++||+|.+..-
T Consensus 180 sml~a~nnkG~c---yvW~--l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 180 SMLAAANNKGNC---YVWR--LLNHQT---ASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cEEEEecCCccE---EEEE--ccCCCc---cccceEhhheecccceEEEEEECCCCcEEEee
Confidence 877776655320 0000 011100 0112233221 234456667889999887654
No 195
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.32 E-value=7.6 Score=36.32 Aligned_cols=134 Identities=14% Similarity=0.034 Sum_probs=84.8
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG 126 (224)
.+=+||++..+ +.-.+...-.+-..|+|+|-.+.-|++-+..++|..+.+.+.. +-.|. ++.....-+++-|||
T Consensus 390 KTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~-Dl~~lITAvcy~PdG 463 (712)
T KOG0283|consen 390 KTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWN-DLRDLITAVCYSPDG 463 (712)
T ss_pred ccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeeh-hhhhhheeEEeccCC
Confidence 35567777643 3333444567778999999555689999999999999986522 22233 345677899999999
Q ss_pred CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEe--CCCCCc-c-cceeEE
Q 046107 127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFN--DPNAKN-I-SFVTSA 201 (224)
Q Consensus 127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~--~~~g~~-~-~~~t~~ 201 (224)
..-|..... |.+..++..| ++....+ ...+++ . +-+|++
T Consensus 464 k~avIGt~~------------------------------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 464 KGAVIGTFN------------------------------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred ceEEEEEec------------------------------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 865554444 5666777654 5544432 222221 1 236766
Q ss_pred EEE---CCEEEEEeCCCCeEEEeeC
Q 046107 202 LEF---QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 202 ~~~---~g~lyv~~~~~~~i~~~~~ 223 (224)
-.. -++|.|++.. .+|.+|++
T Consensus 508 Q~~p~~~~~vLVTSnD-SrIRI~d~ 531 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSND-SRIRIYDG 531 (712)
T ss_pred EecCCCCCeEEEecCC-CceEEEec
Confidence 533 2568888754 67877775
No 196
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=92.27 E-value=5.5 Score=32.67 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=69.1
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~ 127 (224)
.-.+-++|...++.......-..-.-|+++|+|+++.+.+ ....|.-++.......... .....-+.+++.-+++
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEE----QFKFEVNEISWNNSND 160 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehh----cccceeeeeeecCCCC
Confidence 4456666765566665555555566899999998777766 4567777877532211111 1223457788887788
Q ss_pred EEEEEecCCchhhhhhccChhHHHH--HhhchhhHHhhhhcCCCceEEEEEECCCCcEEEE
Q 046107 128 FWISLIKMNSSAVETVHSSKNRKQL--LEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE 186 (224)
Q Consensus 128 l~va~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~ 186 (224)
+++...+.. +++ |..||.+.++ +...|. .=-.+.|||+|+...+
T Consensus 161 ~Fflt~GlG--~v~-ILsypsLkpv~si~AH~s------------nCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 161 LFFLTNGLG--CVE-ILSYPSLKPVQSIKAHPS------------NCICIEFDPDGRYFAT 206 (313)
T ss_pred EEEEecCCc--eEE-EEeccccccccccccCCc------------ceEEEEECCCCceEee
Confidence 877766632 111 3345544332 222221 1345788888887655
No 197
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.01 E-value=1.7 Score=29.37 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.0
Q ss_pred CCCCceEECCCCC-EEEEEecC
Q 046107 115 GGPDNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 115 ~~p~~i~~d~dG~-l~va~~~~ 135 (224)
..|+||+++++++ |||++...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccC
Confidence 4799999999876 99998776
No 198
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=91.95 E-value=8.4 Score=34.08 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=63.6
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhh
Q 046107 76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEE 155 (224)
Q Consensus 76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~ 155 (224)
..|..+....+....+.|..+++..+. ..-.|.+. ..-...+++.++|++..+..-.
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~kH-~~pVysvafS~~g~ylAsGs~d-------------------- 473 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESGV--PIHTLMKH-QEPVYSVAFSPNGRYLASGSLD-------------------- 473 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCCc--eeEeeccC-CCceEEEEecCCCcEEEecCCC--------------------
Confidence 334334345555566777778775321 01112111 1123789999999876654444
Q ss_pred chhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107 156 HPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~ 223 (224)
+.|...+ +.|++.+.+.+..+ +..+++. +|+..-++.....+.++++
T Consensus 474 ----------------g~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 474 ----------------GCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------CeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 5666666 45888888876433 5666654 6788888888888888876
No 199
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.75 E-value=6.9 Score=32.63 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=58.3
Q ss_pred hccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107 42 LVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN 119 (224)
Q Consensus 42 ~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~ 119 (224)
++...++.+...+|..+|+......+ ..---++.++| +++ .||+-.-...-..+|+..+ .-.+.|.. -.+-.+.
T Consensus 159 ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~g-hesDINs 234 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEG-HESDINS 234 (343)
T ss_pred eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecc-cccccce
Confidence 34455666666777666665544444 34446889999 887 9999877777777777532 23445542 2234677
Q ss_pred eEECCCCCEEEEEecC
Q 046107 120 INLAPDGSFWISLIKM 135 (224)
Q Consensus 120 i~~d~dG~l~va~~~~ 135 (224)
+.+-|+|.-+++....
T Consensus 235 v~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDD 250 (343)
T ss_pred EEEccCCCeeeecCCC
Confidence 7888888877776665
No 200
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.67 E-value=7.6 Score=33.73 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=40.1
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee--cc--CCCCCCceEE--CCC--CCEEEEEecC
Q 046107 66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI--EN--LPGGPDNINL--APD--GSFWISLIKM 135 (224)
Q Consensus 66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--~~--~~~~p~~i~~--d~d--G~l~va~~~~ 135 (224)
.....+.|++++....+||+++-. ..||+|..+.......+.+. .. +..-..||++ ..+ |.|.+++.+.
T Consensus 205 ~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 205 KVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp E-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred cCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 344578899999988899999965 68999998632111222221 11 2234567777 334 4466666555
No 201
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=91.66 E-value=7.4 Score=32.80 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=46.3
Q ss_pred cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC-CcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG-DKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+....-|-+.|+|.+. |.++.+..+.|-.||..-. .....++|.+- .....|.+-|.|.+.+.....
T Consensus 170 DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCceEEEecCC
Confidence 4455668899999875 8899999999999998532 11223444432 234789999999877765554
No 202
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.60 E-value=0.6 Score=39.75 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDG 126 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG 126 (224)
++.|+.+|...+....-....-.+|+|+|+| +.+.|++..-...+|-||+.- +.. ..++.+. ....-++.+.|-|
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~--l~~p~~v~~dh-vsAV~dVdfsptG 284 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN--LSRPLNVHKDH-VSAVMDVDFSPTG 284 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhh--hcccchhhccc-ceeEEEeccCCCc
Confidence 5566677754333221122345789999999 568999999999999999863 111 2333321 2234567777878
Q ss_pred CEEEEEecC
Q 046107 127 SFWISLIKM 135 (224)
Q Consensus 127 ~l~va~~~~ 135 (224)
.=+|+....
T Consensus 285 ~EfvsgsyD 293 (433)
T KOG0268|consen 285 QEFVSGSYD 293 (433)
T ss_pred chhcccccc
Confidence 777776666
No 203
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=91.59 E-value=0.18 Score=28.43 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=17.9
Q ss_pred CCCceEECCCCCEEEEEecC
Q 046107 116 GPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 116 ~p~~i~~d~dG~l~va~~~~ 135 (224)
.+.+|++|++|++|++....
T Consensus 14 ~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eEEEEEECCCCCEEEEEeec
Confidence 58999999999999998765
No 204
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.21 E-value=6.7 Score=36.08 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=71.6
Q ss_pred CceEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeecc-CCCCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGL--YFANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIEN-LPGGPD 118 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~--~~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~ 118 (224)
-.++-+|||.+.+|+.+..-. ..-.|++.- +| .||+.-.. -..+.+|++... ..+..... .+..--
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~-~g-~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL-GG-KLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGF 469 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceeeeEEEEE-CC-EEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccc
Confidence 346889999988888765332 222344443 44 59998752 256888988642 22222111 111223
Q ss_pred ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeC-CCCCcccc
Q 046107 119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND-PNAKNISF 197 (224)
Q Consensus 119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~-~~g~~~~~ 197 (224)
++++- +|.||+..+...... ...|-++||.......+.. +.. ..
T Consensus 470 g~a~~-~~~iYvvGG~~~~~~-------------------------------~~~VE~ydp~~~~W~~v~~m~~~---rs 514 (571)
T KOG4441|consen 470 GVAVL-NGKIYVVGGFDGTSA-------------------------------LSSVERYDPETNQWTMVAPMTSP---RS 514 (571)
T ss_pred eEEEE-CCEEEEECCccCCCc-------------------------------cceEEEEcCCCCceeEcccCccc---cc
Confidence 45553 688999877652110 1468999998654444422 212 12
Q ss_pred eeEEEEECCEEEEEeC
Q 046107 198 VTSALEFQGNLYLASI 213 (224)
Q Consensus 198 ~t~~~~~~g~lyv~~~ 213 (224)
...++..++.+|+..-
T Consensus 515 ~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVGG 530 (571)
T ss_pred cccEEEECCEEEEEec
Confidence 3345678889998764
No 205
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.16 E-value=9.2 Score=35.20 Aligned_cols=128 Identities=14% Similarity=0.057 Sum_probs=69.7
Q ss_pred CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCCC-----CeEEEEEccCCCcccceEeeccCC-CCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESWK-----FRCIKHWLKLGDKRDREIFIENLP-GGPD 118 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~-~~p~ 118 (224)
...+++||+.+++|..++ .+..+ -|++.- +| .||+.-... ..|-+|++... .......... ..--
T Consensus 348 l~~ve~YD~~~~~W~~~a-~M~~~R~~~~v~~l-~g-~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVA-PMNTKRSDFGVAVL-DG-KLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCceeccC-CccCccccceeEEE-CC-EEEEEeccccccccccEEEecCCCC---cccccCCCCcceeee
Confidence 457999999988887643 22222 244443 44 599876433 35888888642 1222221111 1112
Q ss_pred ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEE-eCCCCCcccc
Q 046107 119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREF-NDPNAKNISF 197 (224)
Q Consensus 119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~-~~~~g~~~~~ 197 (224)
+.+. -+|.+|+..+...+. ..-..|.++||.-+.-... +.+..+ .
T Consensus 422 gv~~-~~g~iYi~GG~~~~~------------------------------~~l~sve~YDP~t~~W~~~~~M~~~R---~ 467 (571)
T KOG4441|consen 422 GVAV-LGGKLYIIGGGDGSS------------------------------NCLNSVECYDPETNTWTLIAPMNTRR---S 467 (571)
T ss_pred EEEE-ECCEEEEEcCcCCCc------------------------------cccceEEEEcCCCCceeecCCccccc---c
Confidence 2333 378999998866422 0115789999974332222 222211 1
Q ss_pred eeEEEEECCEEEEEeCCC
Q 046107 198 VTSALEFQGNLYLASINS 215 (224)
Q Consensus 198 ~t~~~~~~g~lyv~~~~~ 215 (224)
-..++..++.||+-.-..
T Consensus 468 ~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred cceEEEECCEEEEECCcc
Confidence 223556788998876543
No 206
>PHA02713 hypothetical protein; Provisional
Probab=91.11 E-value=9.7 Score=34.89 Aligned_cols=126 Identities=8% Similarity=-0.031 Sum_probs=64.7
Q ss_pred ceEEEEeCCCCeEEEEecCcc--ccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCCCCCce
Q 046107 49 GQLLRYDPSSKQVSIVLEGLY--FANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPGGPDNI 120 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~--~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i 120 (224)
..++++|+.++++..+..-.. ...+++.- ++ .|||.-.. ...+++|++... ............-..-
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l-~~-~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~~~R~~~~ 346 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIV-DN-EIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMIKNRCRFS 346 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEE-CC-EEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCcchhhcee
Confidence 357899998788776542211 11244443 44 59998542 246889998642 1211111111111122
Q ss_pred EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc-EEEEEeCCCCCccccee
Q 046107 121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS-IIREFNDPNAKNISFVT 199 (224)
Q Consensus 121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~-~~~~~~~~~g~~~~~~t 199 (224)
+..-+|.+|+-.+..... ....|.++||.-+ +...-+.|... ...
T Consensus 347 ~~~~~g~IYviGG~~~~~-------------------------------~~~sve~Ydp~~~~W~~~~~mp~~r--~~~- 392 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTN-------------------------------VERTIECYTMGDDKWKMLPDMPIAL--SSY- 392 (557)
T ss_pred EEEECCEEEEECCcCCCC-------------------------------CCceEEEEECCCCeEEECCCCCccc--ccc-
Confidence 233468999987654210 0146899998743 33222222221 122
Q ss_pred EEEEECCEEEEEeC
Q 046107 200 SALEFQGNLYLASI 213 (224)
Q Consensus 200 ~~~~~~g~lyv~~~ 213 (224)
.++..+|+||+-.-
T Consensus 393 ~~~~~~g~IYviGG 406 (557)
T PHA02713 393 GMCVLDQYIYIIGG 406 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 33456899999653
No 207
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.09 E-value=6.3 Score=34.81 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCeEEEEe----------cCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCC
Q 046107 48 HGQLLRYDPSSKQVSIVL----------EGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGG 116 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~----------~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 116 (224)
+|+|+..--.+|.++.+. .....| +-+.|+|+++.++++.+....+.-+++++.. .+.-+.+-..+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDY 155 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDY 155 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcce
Confidence 455555444445555432 233445 5778999888888887765555555555422 11111122234
Q ss_pred CCceEECC-CCCEEEEEecC
Q 046107 117 PDNINLAP-DGSFWISLIKM 135 (224)
Q Consensus 117 p~~i~~d~-dG~l~va~~~~ 135 (224)
....++-+ .+.+.++.++.
T Consensus 156 VR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred eEeeccccCCCeEEEecCCC
Confidence 44455544 45688887776
No 208
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=91.03 E-value=6.1 Score=35.42 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCceEEEEeCCCCeEE------EEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC-CCC-
Q 046107 46 EPHGQLLRYDPSSKQVS------IVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-GGP- 117 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~------~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-~~p- 117 (224)
-.+|+|-.|+..+-.+. ...........|+||.||+ .+.+....+.+-.|++...+ ....++. +++ .+|
T Consensus 336 c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~k-kpL~~~t-gL~t~~~~ 412 (641)
T KOG0772|consen 336 CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFK-KPLNVRT-GLPTPFPG 412 (641)
T ss_pred ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccc-cchhhhc-CCCccCCC
Confidence 34677766663211111 1112334567899999998 66777788888889887521 1122232 222 233
Q ss_pred CceEECCCCCEEEEEecC
Q 046107 118 DNINLAPDGSFWISLIKM 135 (224)
Q Consensus 118 ~~i~~d~dG~l~va~~~~ 135 (224)
.+.++.|+..|.++....
T Consensus 413 tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSA 430 (641)
T ss_pred CccccCCCceEEEecccc
Confidence 789999999988886654
No 209
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.84 E-value=7.6 Score=31.48 Aligned_cols=85 Identities=13% Similarity=0.003 Sum_probs=53.4
Q ss_pred CCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc-eEEC
Q 046107 46 EPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN-INLA 123 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~-i~~d 123 (224)
.++-.++.+|-++|++-.- ......-|.++|..+.. +.++-+....+..||-........+++-+ .-|+ +.+|
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde----a~D~V~Si~ 152 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE----AKDGVSSID 152 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh----hcCceeEEE
Confidence 4455788899888876654 44577789999998764 88888888899988865433333344322 1122 2334
Q ss_pred CCCCEEEEEecC
Q 046107 124 PDGSFWISLIKM 135 (224)
Q Consensus 124 ~dG~l~va~~~~ 135 (224)
-.+...++....
T Consensus 153 v~~heIvaGS~D 164 (307)
T KOG0316|consen 153 VAEHEIVAGSVD 164 (307)
T ss_pred ecccEEEeeccC
Confidence 445555554444
No 210
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=90.67 E-value=10 Score=32.55 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=37.2
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...-.-+.|+.||. +..+--.+++|..+..+.+. ....+. ........|.+-|.+.++++....
T Consensus 106 KDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~--~~~~~~-~e~~dieWl~WHp~a~illAG~~D 169 (399)
T KOG0296|consen 106 KDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGG--EQWKLD-QEVEDIEWLKWHPRAHILLAGSTD 169 (399)
T ss_pred CCceEEEEEccCce-EEEecCCCccEEEEEcccCc--eEEEee-cccCceEEEEecccccEEEeecCC
Confidence 34456789999996 66776788999999886421 111221 111233455555555555554444
No 211
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.64 E-value=9.1 Score=32.02 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=45.3
Q ss_pred eeeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCC
Q 046107 4 IHLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGD 81 (224)
Q Consensus 4 ~~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~ 81 (224)
.++..|-....+|.+.+.+ .|.++-. +|.|-.|+.......... ....| --.+|.++ .
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssW------------------DgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~ 66 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSW------------------DGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-S 66 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEec------------------cCcEEEEeccchhhhhhe-ecCCceeeeeccCC-c
Confidence 4566667777788888654 5666641 566766775432222111 12233 24566654 4
Q ss_pred EEEEEeCCCCeEEEEEccC
Q 046107 82 FVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 82 ~Lyv~~~~~~~I~~~~~~~ 100 (224)
.+|+.. ..++|.++|+++
T Consensus 67 ~~~~G~-~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 67 TIVTGG-LDGQVRRYDLNT 84 (323)
T ss_pred eEEEec-cCceEEEEEecC
Confidence 577776 468999999975
No 212
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.63 E-value=9.4 Score=32.16 Aligned_cols=85 Identities=12% Similarity=0.181 Sum_probs=55.2
Q ss_pred ccCCCCceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107 43 VEGEPHGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN 119 (224)
Q Consensus 43 ~~~~~~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~ 119 (224)
+....+|.+..++. +.++.+. .....-|+|+++|.|+ |-++-...+.+..+++-.+. .-++-.+...+..
T Consensus 101 lS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATL 173 (362)
T ss_pred eeecCCCcEEEEEc--CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc----cceeeccCCccee
Confidence 34455676666663 3455442 2334489999999997 88888888888888874211 1222234456778
Q ss_pred eEECCCCCEEEEEec
Q 046107 120 INLAPDGSFWISLIK 134 (224)
Q Consensus 120 i~~d~dG~l~va~~~ 134 (224)
+.+++.|.-|+-...
T Consensus 174 v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGR 188 (362)
T ss_pred eEEcCCCCEEEEEec
Confidence 999999985555443
No 213
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.54 E-value=13 Score=33.46 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred CceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC----CCCceEE
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG----GPDNINL 122 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~----~p~~i~~ 122 (224)
....+-+|.+ |.+........... .+..-++|.+++.+. +.+..++..|... .. . ..++ .=-.+..
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~v~---~~-~-~l~~~~~~~HHD~~~ 197 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGKVI---WE-Y-DLPGGYYDFHHDIDE 197 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT--EE---EE-E-E--TTEE-B-S-EEE
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCCEE---Ee-e-ecCCcccccccccEE
Confidence 4568888986 77765443322222 267778897444443 7899999876311 11 1 1222 1257788
Q ss_pred CCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeC-----CCC-----
Q 046107 123 APDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND-----PNA----- 192 (224)
Q Consensus 123 d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~-----~~g----- 192 (224)
.++|++++.......... +. ....-...|+++|+.|+++..+.. +..
T Consensus 198 l~nGn~L~l~~~~~~~~~------~~-----------------~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~ 254 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDE------DK-----------------DVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLK 254 (477)
T ss_dssp -TTS-EEEEEEETTEE-T------S------------------EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGG
T ss_pred CCCCCEEEEEeecccccC------CC-----------------CccEecCEEEEECCCCCEEEEEehHHhCCcccccccc
Confidence 899997776663210000 00 000011579999999999888632 111
Q ss_pred -------------CcccceeEEEEE--CCEEEEEeCCCCeEEEee
Q 046107 193 -------------KNISFVTSALEF--QGNLYLASINSNFIGKLP 222 (224)
Q Consensus 193 -------------~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~ 222 (224)
...-...++..+ ++.|.+++...+.|.+++
T Consensus 255 ~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 255 PYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp T--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred cccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 011123344433 699999999999999987
No 214
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=90.24 E-value=11 Score=32.46 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=78.3
Q ss_pred eEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 50 QLLRYDPSSKQVSIV----LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~----~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.++.+.+.+|.+..- ...-..-.++++||.++.+|.+.+-.+.|..+|+..+. ....++..--.+-.+=|.+..+
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-KKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-ccceeEeeccCCceeeEEccCC
Confidence 344444444554421 22233445899999888899999999999999986421 2233333212223344555554
Q ss_pred CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC----CCCcEEEEEeCCCCCcccceeEE
Q 046107 126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS----ANGSIIREFNDPNAKNISFVTSA 201 (224)
Q Consensus 126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~G~~~~~~~~~~g~~~~~~t~~ 201 (224)
=.+.++.... |.+-..| ..|+++..+....+ .+|++
T Consensus 314 ~~lLasG~Dd------------------------------------Gt~~iwDLR~~~~~~pVA~fk~Hk~----pItsi 353 (440)
T KOG0302|consen 314 EPLLASGGDD------------------------------------GTLSIWDLRQFKSGQPVATFKYHKA----PITSI 353 (440)
T ss_pred cceeeecCCC------------------------------------ceEEEEEhhhccCCCcceeEEeccC----CeeEE
Confidence 4433333332 2332222 24677777765543 47777
Q ss_pred EEE--CCEEEEEeCCCCeEEEeeC
Q 046107 202 LEF--QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 202 ~~~--~g~lyv~~~~~~~i~~~~~ 223 (224)
..+ +..++.++-..+.|..-+|
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEe
Confidence 644 6888888888888887765
No 215
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.08 E-value=5.7 Score=38.23 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=69.3
Q ss_pred ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeE
Q 046107 15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRC 93 (224)
Q Consensus 15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I 93 (224)
||...|++.+.++-. -+++|..++..+-+.... ......+-|+.|||-|+ -+.+.+..+.|
T Consensus 134 Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrti 195 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTL 195 (942)
T ss_pred eeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCCceE
Confidence 666777777777642 367888888765433333 34456678999999997 55666777777
Q ss_pred EEEEccCCCcccceE----eecc-CCCCCCceEECCCCCEEEEEecCCc--hhhhhhccCh
Q 046107 94 IKHWLKLGDKRDREI----FIEN-LPGGPDNINLAPDGSFWISLIKMNS--SAVETVHSSK 147 (224)
Q Consensus 94 ~~~~~~~~~~~~~~~----~~~~-~~~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p 147 (224)
..|+... .+-.+. |-+. ...+..-+.+.|||.+.++....+. +++..+.+..
T Consensus 196 kvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 196 KVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred EEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 7776543 111111 1110 1235577888999999988776553 3444444433
No 216
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.96 E-value=11 Score=31.79 Aligned_cols=62 Identities=13% Similarity=-0.016 Sum_probs=33.7
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec----c-CCCC-CCceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE----N-LPGG-PDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----~-~~~~-p~~i~~d~dG~l~va~~~~ 135 (224)
......|.++||+. ||+.. ..+.|..-+..+ ..+.|.+ . ..++ --+++..+++.+|++.+.+
T Consensus 186 ~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 186 SRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cceehhceecCCCC-EEEEe-CCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 34456889999986 87776 456666665111 1122322 1 1111 3467888999999987765
No 217
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=89.56 E-value=6.1 Score=33.40 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=39.9
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGS 127 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~ 127 (224)
...-.+++|+.||+ -+++....+.|..|+.++-...+.+.+-.. ..+.|.-+++.+|-.
T Consensus 86 ~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred CCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence 44567999999998 556666778888888875322222222112 345899999999976
No 218
>PHA03098 kelch-like protein; Provisional
Probab=89.31 E-value=16 Score=32.97 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=67.8
Q ss_pred ceEEEEeCCCCeEEEEecCccccc---eeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCC-CCC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFAN---GVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPG-GPD 118 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pn---gia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~ 118 (224)
..++++|+.+++|+...+ +..|. ..+ .-++ .|||.-.. .+.+.+|++... ...... ..+. .-.
T Consensus 358 ~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~-~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~-~~p~~r~~ 430 (534)
T PHA03098 358 NTVESWKPGESKWREEPP-LIFPRYNPCVV-NVNN-LIYVIGGISKNDELLKTVECFSLNTN---KWSKGS-PLPISHYG 430 (534)
T ss_pred ceEEEEcCCCCceeeCCC-cCcCCccceEE-EECC-EEEEECCcCCCCcccceEEEEeCCCC---eeeecC-CCCccccC
Confidence 357788887777775432 22222 222 2344 59987431 256889998642 122211 1111 111
Q ss_pred ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccc
Q 046107 119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISF 197 (224)
Q Consensus 119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~ 197 (224)
..++--+|.+|+..+..... .......+.++|+.- ++...-..+... .
T Consensus 431 ~~~~~~~~~iyv~GG~~~~~----------------------------~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~ 479 (534)
T PHA03098 431 GCAIYHDGKIYVIGGISYID----------------------------NIKVYNIVESYNPVTNKWTELSSLNFPR---I 479 (534)
T ss_pred ceEEEECCEEEEECCccCCC----------------------------CCcccceEEEecCCCCceeeCCCCCccc---c
Confidence 22333467899886643210 000114689999874 443321112111 1
Q ss_pred eeEEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107 198 VTSALEFQGNLYLASIN-----SNFIGKLPL 223 (224)
Q Consensus 198 ~t~~~~~~g~lyv~~~~-----~~~i~~~~~ 223 (224)
...++..+++||+-.-. .+.|.+|+.
T Consensus 480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred cceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 22334458899986643 245666653
No 219
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.23 E-value=3.7 Score=39.48 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=48.1
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCc
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNS 137 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~ 137 (224)
..++|+||+. ++++-+..+.|..|+... +...+++- +-.+.+-|+.+||-|.++.+....++
T Consensus 133 ~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 133 LDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred ceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeee-cccccccceEECCccCeeeeecCCce
Confidence 3678999986 888889999999998754 23334433 33467899999999999999888764
No 220
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.16 E-value=0.42 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=13.8
Q ss_pred CCCceEECCCCCEEEEEe
Q 046107 116 GPDNINLAPDGSFWISLI 133 (224)
Q Consensus 116 ~p~~i~~d~dG~l~va~~ 133 (224)
....|..|++|++|++..
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 346788999999999864
No 221
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=88.63 E-value=11 Score=31.84 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=56.5
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccc-cceeEEecCC-CEEEEE
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYF-ANGVALSKHG-DFVVVC 86 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~-pngia~~~dg-~~Lyv~ 86 (224)
.+.|+..+.+||.-.++-++ +|+|-.++.++++..... .+-.. .|.+.+-|.. ..+.|+
T Consensus 349 Syvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 45678888888876665433 677777776654432211 11122 2455555533 235555
Q ss_pred eCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107 87 ESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 87 ~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+ .++.|+..+++|. -.+.|..+ ..|..-+.++.++|.+..+.+..
T Consensus 412 N-rsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 412 N-RSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred c-CCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccC
Confidence 5 4567888887762 12333322 12334566778888855555544
No 222
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=88.30 E-value=2.7 Score=36.45 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=68.6
Q ss_pred ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCC
Q 046107 2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHG 80 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg 80 (224)
||.++...-....++++.++...|+|-+ .+|+|-.+|..-.+-+.+..+ ..-+..+.++|..
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 3444444445667899988888887753 367776677543333333333 5567799999987
Q ss_pred CEEEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107 81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
. |.++-+..+-|-.+|+..+ . .++.- -.-..-++.+.++|++..+....
T Consensus 235 g-LiasgskDnlVKlWDprSg---~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 235 G-LIASGSKDNLVKLWDPRSG---S--CLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred c-eeEEccCCceeEeecCCCc---c--hhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 6 7676666676666777532 1 11110 01134677888889877776665
No 223
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.30 E-value=12 Score=30.36 Aligned_cols=80 Identities=20% Similarity=0.099 Sum_probs=48.6
Q ss_pred CceEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEe--CCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 48 HGQLLRYDPSSKQVSIVLEG----LYFANGVALSKHGDFVVVCE--SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~----~~~pngia~~~dg~~Lyv~~--~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
+|.|++++.. ..+.+... ...+...++++||+.+.+.. .....++.....+. ...+.. ......-.
T Consensus 1 dG~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~~~--g~~l~~PS 72 (253)
T PF10647_consen 1 DGQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPVLT--GGSLTRPS 72 (253)
T ss_pred CCcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceeecc--CCcccccc
Confidence 3667776654 23333222 22567899999998775544 45667887766542 222221 12344557
Q ss_pred ECCCCCEEEEEecC
Q 046107 122 LAPDGSFWISLIKM 135 (224)
Q Consensus 122 ~d~dG~l~va~~~~ 135 (224)
+|++|.+|+.....
T Consensus 73 ~d~~g~~W~v~~~~ 86 (253)
T PF10647_consen 73 WDPDGWVWTVDDGS 86 (253)
T ss_pred ccCCCCEEEEEcCC
Confidence 89999999998755
No 224
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=87.88 E-value=2.6 Score=36.59 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=26.0
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
..|-+|-|.++|||+....+-|++|++.+
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCC
Confidence 46778889999999999999999999975
No 225
>PHA02790 Kelch-like protein; Provisional
Probab=87.54 E-value=19 Score=32.34 Aligned_cols=82 Identities=5% Similarity=-0.083 Sum_probs=42.8
Q ss_pred CceEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCC-CCCceEE
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFA--NGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPG-GPDNINL 122 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~ 122 (224)
...++++|+.++++..+.+ +..| +.-+..-+| .||+.-.. ...+.+|++... ...... ..+. .-...++
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~-~iYviGG~~~~~sve~ydp~~n---~W~~~~-~l~~~r~~~~~~ 359 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANN-KLYVVGGLPNPTSVERWFHGDA---AWVNMP-SLLKPRCNPAVA 359 (480)
T ss_pred CCeEEEEECCCCEEEECCC-CCchhhcceEEEECC-EEEEECCcCCCCceEEEECCCC---eEEECC-CCCCCCcccEEE
Confidence 3468999998777776542 2222 222223355 59988642 246888887431 122111 1221 1122233
Q ss_pred CCCCCEEEEEecC
Q 046107 123 APDGSFWISLIKM 135 (224)
Q Consensus 123 d~dG~l~va~~~~ 135 (224)
.-+|.||+..+..
T Consensus 360 ~~~g~IYviGG~~ 372 (480)
T PHA02790 360 SINNVIYVIGGHS 372 (480)
T ss_pred EECCEEEEecCcC
Confidence 3478999876643
No 226
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=87.53 E-value=20 Score=31.74 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=46.7
Q ss_pred cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCe
Q 046107 14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFR 92 (224)
Q Consensus 14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~ 92 (224)
+.++..++|.+.+.- .-.|.||.|..++|..-.+... .+...-|.++-||. .+++.+..+.
T Consensus 85 ~al~s~n~G~~l~ag-----------------~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAG-----------------TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGA 146 (476)
T ss_pred eeeecCCCceEEEee-----------------cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCcc
Confidence 455556677666652 1256777777777764433333 34456889999997 8899999999
Q ss_pred EEEEEcc
Q 046107 93 CIKHWLK 99 (224)
Q Consensus 93 I~~~~~~ 99 (224)
|..|.+.
T Consensus 147 V~vW~l~ 153 (476)
T KOG0646|consen 147 VLVWLLT 153 (476)
T ss_pred EEEEEEE
Confidence 9998864
No 227
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.48 E-value=16 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=24.8
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.|+|...++|+ ++|+....+.|++++..+
T Consensus 146 iNsV~~~~~G~-yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 146 INSVDKDDDGD-YLISSRNTSTIYKIDPST 174 (299)
T ss_pred eeeeeecCCcc-EEEEecccCEEEEEECCC
Confidence 47888889997 779999999999999764
No 228
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=87.30 E-value=18 Score=31.07 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=75.0
Q ss_pred CCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECC
Q 046107 47 PHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAP 124 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~ 124 (224)
..|.|..+..++|..+.... ......=+.++|.+. ++.+-+..+.||.|.+... +..+++... ..| .-=.+-|
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~Gh--~~~ct~G~f~p 200 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSGH--NSPCTCGEFIP 200 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecCC--CCCcccccccC
Confidence 45667666666554443322 222223357889775 7777778899999998531 345565421 111 2223446
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCc-----ccce
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKN-----ISFV 198 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~-----~~~~ 198 (224)
+|...++.... +.|...++. |.++-.+...++.. ++..
T Consensus 201 dGKr~~tgy~d------------------------------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 201 DGKRILTGYDD------------------------------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred CCceEEEEecC------------------------------------ceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 78766665555 677778865 76665554222211 1111
Q ss_pred eEE---EEECCEEEEEeCCCCeEEEee
Q 046107 199 TSA---LEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 199 t~~---~~~~g~lyv~~~~~~~i~~~~ 222 (224)
+.. +..++.+++.+.....|..+.
T Consensus 245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 245 GSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cceeEeccCCccEEEEccccceEEEec
Confidence 222 233577777777776666554
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=87.10 E-value=5.9 Score=33.64 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 47 PHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
.++.|..++...-++.- +..+..+...+.+||||+.|..+....-+|.++.+... ....+........|+++.+|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----KGYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----eeEEecccccCceeEEECCC
Confidence 35555555543223332 23455566788999999999988888889999988642 22333222234589999999
Q ss_pred CCEEEEEecCCchhhhhhc
Q 046107 126 GSFWISLIKMNSSAVETVH 144 (224)
Q Consensus 126 G~l~va~~~~~~~~~~~~~ 144 (224)
|++-.- ...+ -+.++++
T Consensus 145 g~f~ai-~sRr-DCkdyv~ 161 (447)
T KOG4497|consen 145 GQFCAI-LSRR-DCKDYVQ 161 (447)
T ss_pred Cceeee-eecc-cHHHHHH
Confidence 985432 2222 3455544
No 230
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=86.42 E-value=1.9 Score=26.48 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=30.6
Q ss_pred CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe
Q 046107 118 DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188 (224)
Q Consensus 118 ~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~ 188 (224)
..+++.+||+|+++....+.. ......|.|+++||.+...+.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~-----------------------------~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSS-----------------------------GNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred EEEEECCCCcEEEEEEeecCC-----------------------------CcccEEEEEECCCCCccCCcC
Confidence 568899999999998654210 011167999999999988873
No 231
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=86.40 E-value=14 Score=33.14 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=40.5
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee-ccCCCCC-CceEECCCCC-EEEEEecC
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI-ENLPGGP-DNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~~~p-~~i~~d~dG~-l~va~~~~ 135 (224)
-+.+++-.++|.++.+..+.|..||.+|- ...+- ......| .||++.+-.. |+++.+..
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGM----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCC----CcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 45688888899999999999999998762 11111 1122234 8999998765 66666665
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=10 Score=32.70 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=63.1
Q ss_pred cceeEEecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCC-EEEEEecCCchhhhhhccC
Q 046107 71 ANGVALSKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSS 146 (224)
Q Consensus 71 pngia~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~ 146 (224)
+.+|.|-++ -.+-|++.+..+++..||+.- + .+.+... .......+..+++|+ +|+++..
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~------------ 268 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRH---Q-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTK------------ 268 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcc---c-CcceeEeccccCcceeeeecCCCcEEEEeccc------------
Confidence 346667653 145889999999999999862 1 2222222 222347888899998 5655443
Q ss_pred hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEE-EeCCCCCcccceeEEEEECCEEEEEeCCCCeEEE
Q 046107 147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIRE-FNDPNAKNISFVTSALEFQGNLYLASINSNFIGK 220 (224)
Q Consensus 147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~-~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~ 220 (224)
+.+..||-. |++... +..-.| .++++.-+...=|+++.+=+|..|
T Consensus 269 -------------------------g~l~~FD~r~~kl~g~~~kg~tG----sirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 269 -------------------------GQLAKFDLRGGKLLGCGLKGITG----SIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred -------------------------chhheecccCceeeccccCCccC----CcceEEEcCCCceEEeeccceeEE
Confidence 467788854 555554 444444 366666666545555555444444
No 233
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=86.22 E-value=7 Score=33.09 Aligned_cols=32 Identities=3% Similarity=-0.143 Sum_probs=27.2
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
..+..-+++.+||+.||+......+|..+|+.
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 34445678999999999999999999999986
No 234
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=86.08 E-value=18 Score=29.97 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=46.5
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...+-+++++++||+ ..++-+..+.+..+|+.+++ ..+.|. +-....-++++++|.+-.|+....
T Consensus 62 HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~--~t~~f~-GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE--STRRFV-GHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred cceEecceEEccCCc-eEEeccccceEEEEEecCCc--EEEEEE-ecCCceEEEEecCCCceeecCCCc
Confidence 366778999999998 77777888999999997632 223343 223345688888888877766555
No 235
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=86.03 E-value=4.5 Score=36.17 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=40.3
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc---eEECCCCC-EEEEEecCC
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN---INLAPDGS-FWISLIKMN 136 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~dG~-l~va~~~~~ 136 (224)
.++++||.+ |-++....+-|..||+... ++.....|++|| |.+..||. ||.+.....
T Consensus 514 ALa~spDak-vcFsccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 514 ALAISPDAK-VCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred hhhcCCccc-eeeeeccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 789999998 7777777889999998641 222233455554 66778885 999877663
No 236
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.97 E-value=23 Score=30.97 Aligned_cols=116 Identities=16% Similarity=0.033 Sum_probs=71.2
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-c--CCCCCCceEECC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-N--LPGGPDNINLAP 124 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~--~~~~p~~i~~d~ 124 (224)
+..|=.||..++......+..+....+.++++|..|..+ +..+.+-.++..+.. -...+-. . ...-..-..+.|
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~e--I~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKE--IRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccccc--EEEEeeccccccccccceeEECC
Confidence 445656675545555555556677889999999877776 566777778776521 1122211 1 112356677888
Q ss_pred CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEE
Q 046107 125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALE 203 (224)
Q Consensus 125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~ 203 (224)
+|.+..|.... ++|+..+-. ||+...+..+.-. +.++++.+
T Consensus 398 d~~YvaAGS~d------------------------------------gsv~iW~v~tgKlE~~l~~s~s~--~aI~s~~W 439 (459)
T KOG0288|consen 398 DGSYVAAGSAD------------------------------------GSVYIWSVFTGKLEKVLSLSTSN--AAITSLSW 439 (459)
T ss_pred CCceeeeccCC------------------------------------CcEEEEEccCceEEEEeccCCCC--cceEEEEE
Confidence 77766665554 677777754 7888887665322 25676665
Q ss_pred E
Q 046107 204 F 204 (224)
Q Consensus 204 ~ 204 (224)
.
T Consensus 440 ~ 440 (459)
T KOG0288|consen 440 N 440 (459)
T ss_pred c
Confidence 4
No 237
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=85.79 E-value=5.9 Score=34.43 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=18.8
Q ss_pred ccccceeEEecCCCEEEEEeCC
Q 046107 68 LYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~ 89 (224)
..+|.-+.+|-||++|||+++.
T Consensus 388 ~GGPQMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 388 RGGPQMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred cCCceeEEeccCCcEEEEEchh
Confidence 3568889999999999999863
No 238
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=20 Score=31.07 Aligned_cols=31 Identities=13% Similarity=0.017 Sum_probs=18.6
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHW 97 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~ 97 (224)
....-..+.|+|||++|--....+.+||..+
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d~~~VW~~~ 215 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGADSARVWSVN 215 (398)
T ss_pred hcCccccceeCCCCcEEEEecCCceEEEEec
Confidence 3455678999999985522223344555443
No 239
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=85.58 E-value=24 Score=34.22 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 21 DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 21 ~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
++.+|.+|.+ ...+.+......... ....+...+.|++++--++.+|.++.....|...+++
T Consensus 448 ~~~i~~~d~~-----------------~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~ 510 (877)
T KOG1215|consen 448 NNRIYWADLS-----------------DEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLD 510 (877)
T ss_pred CCEEEEEecc-----------------CCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEcc
Confidence 4478888765 334555444322222 3456788999999998777799999999999999877
Q ss_pred CCCcccceEeeccCCCCCCceEECCC-CCEEEEEecC
Q 046107 100 LGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKM 135 (224)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~ 135 (224)
+.. ..+++......|..+++++. |.+|..+++.
T Consensus 511 g~~---~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~ 544 (877)
T KOG1215|consen 511 GSS---RKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQ 544 (877)
T ss_pred CCc---eeEEEecCCCCccceeeccccCeeEEecCCC
Confidence 632 23433222268999999985 7788888875
No 240
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=85.36 E-value=22 Score=30.41 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=64.0
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCcccceEe-ec--cC--CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHH
Q 046107 78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIF-IE--NL--PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQL 152 (224)
Q Consensus 78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~--~~--~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~ 152 (224)
=||+++.|.............+.-+.++...+ .+ +. ..++.+|..-.+|.+|++...++..
T Consensus 141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~-------------- 206 (442)
T PF15416_consen 141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKA-------------- 206 (442)
T ss_pred CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCCC--------------
Confidence 36777877776554545555443222333222 11 21 2378999999999999999887421
Q ss_pred HhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEE-----eCCCCCccc--ceeEEEEE--CCEEEEEeCCCCeEEEee
Q 046107 153 LEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREF-----NDPNAKNIS--FVTSALEF--QGNLYLASINSNFIGKLP 222 (224)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~-----~~~~g~~~~--~~t~~~~~--~g~lyv~~~~~~~i~~~~ 222 (224)
+| -+|+... |.-++.... ..|.....+ +.+...+. +|.+|+++..+-.|.|++
T Consensus 207 --------------SP---LKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~ 269 (442)
T PF15416_consen 207 --------------SP---LKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFT 269 (442)
T ss_pred --------------Cc---eEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEE
Confidence 01 3444444 444432221 112111111 22222333 478999999999999998
Q ss_pred CC
Q 046107 223 LK 224 (224)
Q Consensus 223 ~~ 224 (224)
+.
T Consensus 270 vs 271 (442)
T PF15416_consen 270 VS 271 (442)
T ss_pred cc
Confidence 63
No 241
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=85.25 E-value=28 Score=31.35 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCceEEEEeCCCCeEEEEe-----cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 47 PHGQLLRYDPSSKQVSIVL-----EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~-----~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
+.|.++.+++.++...... ...++--.++|.++|+ +.-.|+ ++-|..|...+... ..+++. -++..-.++
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS-~G~i~Iw~~~~~~~-~k~~~a--H~ggv~~L~ 294 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDS-GGNILIWSKGTNRI-SKQVHA--HDGGVFSLC 294 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecC-CceEEEEeCCCceE-EeEeee--cCCceEEEE
Confidence 4677888887755433221 1225566899999997 666665 56788888754322 222332 245567888
Q ss_pred ECCCCCEEE
Q 046107 122 LAPDGSFWI 130 (224)
Q Consensus 122 ~d~dG~l~v 130 (224)
.-.+|.|..
T Consensus 295 ~lr~GtllS 303 (626)
T KOG2106|consen 295 MLRDGTLLS 303 (626)
T ss_pred EecCccEee
Confidence 889999887
No 242
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.83 E-value=9.2 Score=35.64 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=38.8
Q ss_pred eEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEe-ecc-CCCCCCceEECCCCCEEEEEecC
Q 046107 74 VALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIF-IEN-LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 74 ia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~~-~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++++++|+.||.+. +++|..++..++. .... .+. .+...+.+++++|+.+.++...+
T Consensus 25 ~~~s~nG~~L~t~~--~d~Vi~idv~t~~---~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs 83 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC--GDRVIIIDVATGS---IALPSGSNEDEDEITALALTPDEEVLVTASRS 83 (775)
T ss_pred eeECCCCCEEEEec--CceEEEEEccCCc---eecccCCccchhhhheeeecCCccEEEEeecc
Confidence 89999999888875 4578888876432 1111 111 23467899999999877776655
No 243
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.78 E-value=31 Score=32.18 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=29.8
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEc
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWL 98 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~ 98 (224)
.+|.|-+++.++.-+......-.+-..|....+++ ++|+..-.+.+..+..
T Consensus 198 NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 198 NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKK 248 (745)
T ss_pred CCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeec
Confidence 36777777775333333333345556777555554 8888766666555544
No 244
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.64 E-value=28 Score=30.81 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=64.0
Q ss_pred EEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107 83 VVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELI 160 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 160 (224)
||-+ +..+.+..|++..+. .+.. ..|..+..+++||-++ +|++...++-.+..+-. ++.
T Consensus 191 l~Ta-S~D~t~k~wdlS~g~-----LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~-----------~~~-- 251 (476)
T KOG0646|consen 191 LYTA-SEDRTIKLWDLSLGV-----LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK-----------LSG-- 251 (476)
T ss_pred EEEe-cCCceEEEEEeccce-----eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc-----------CCc--
Confidence 4433 456677778876532 2222 2456789999999765 88887776422111100 110
Q ss_pred HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107 161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~ 223 (224)
.++.-..-..++++.....+....+. +.+|+++.. +|+|.++.-..+.+.+-+.
T Consensus 252 -------~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 252 -------QSAGVNQKGRHEENTQINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -------ccccccccccccccceeeeeccccCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 00001123444566666666544332 578887754 7888888888877776553
No 245
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=84.41 E-value=6.1 Score=34.23 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=41.6
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK 134 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~ 134 (224)
....+.-++|+||+. ..++.+..+.++.++...+ ......+.-..++.|+++|+-+.....-+.
T Consensus 122 h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred cccchhhhhccCCCc-eeeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhcc
Confidence 346678899999997 5566677888898988532 221222223357889999886655544433
No 246
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=84.14 E-value=24 Score=31.38 Aligned_cols=110 Identities=10% Similarity=-0.005 Sum_probs=70.7
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN 148 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~ 148 (224)
+...+++|+.+|. +.++-.-++.+..|+.+|..+ ..+... .+-.-.+.+..+|++.++..-.
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~---~tl~~H-kgPI~slKWnk~G~yilS~~vD------------- 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLI---STLGQH-KGPIFSLKWNKKGTYILSGGVD------------- 297 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCchhh---hhhhcc-CCceEEEEEcCCCCEEEeccCC-------------
Confidence 3446899999998 777777788999898877321 222111 1223678889999988877665
Q ss_pred HHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
+.++..|. .|.....+...... .-.+.+.++.-|+++....+|.+|.+
T Consensus 298 -----------------------~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 298 -----------------------GTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred -----------------------ccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecCCCceEEEEEe
Confidence 45666775 36665555443221 11234456677777777777777764
No 247
>PHA03098 kelch-like protein; Provisional
Probab=83.73 E-value=33 Score=30.97 Aligned_cols=125 Identities=14% Similarity=0.019 Sum_probs=63.9
Q ss_pred ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCeEEEEEccCCCcccceEeeccCCC-CCCc
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----KFRCIKHWLKLGDKRDREIFIENLPG-GPDN 119 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~ 119 (224)
..++++|+.+++++.+.+ ...| .+++.- ++ .||+.-.. ...+.+|++... ..+... ..+. .-..
T Consensus 311 ~~v~~yd~~~~~W~~~~~-~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~-~lp~~r~~~ 383 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPE-LIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGES---KWREEP-PLIFPRYNP 383 (534)
T ss_pred ccEEEEeCCCCeeeECCC-CCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCC---ceeeCC-CcCcCCccc
Confidence 468999998888876532 2222 233332 44 59887542 245788887542 122211 1111 1111
Q ss_pred eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccce
Q 046107 120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFV 198 (224)
Q Consensus 120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~ 198 (224)
.+.--+|.+|+..+..... .....+.++|+.. ++...-..|.+. . .
T Consensus 384 ~~~~~~~~iYv~GG~~~~~------------------------------~~~~~v~~yd~~t~~W~~~~~~p~~r--~-~ 430 (534)
T PHA03098 384 CVVNVNNLIYVIGGISKND------------------------------ELLKTVECFSLNTNKWSKGSPLPISH--Y-G 430 (534)
T ss_pred eEEEECCEEEEECCcCCCC------------------------------cccceEEEEeCCCCeeeecCCCCccc--c-C
Confidence 2222468899976632100 0015789999874 443322223222 1 2
Q ss_pred eEEEEECCEEEEEeC
Q 046107 199 TSALEFQGNLYLASI 213 (224)
Q Consensus 199 t~~~~~~g~lyv~~~ 213 (224)
..++..+++||+-.-
T Consensus 431 ~~~~~~~~~iyv~GG 445 (534)
T PHA03098 431 GCAIYHDGKIYVIGG 445 (534)
T ss_pred ceEEEECCEEEEECC
Confidence 234557889998764
No 248
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=83.54 E-value=34 Score=30.87 Aligned_cols=29 Identities=7% Similarity=-0.239 Sum_probs=22.9
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHW 97 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~ 97 (224)
.....|+|.+|+.+ +|++......+..++
T Consensus 368 ~delwgla~hps~~-q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 368 GDELWGLATHPSKN-QLLTCGQDKHVRLWN 396 (626)
T ss_pred ccceeeEEcCCChh-heeeccCcceEEEcc
Confidence 34778999999876 899987777776666
No 249
>KOG4328 consensus WD40 protein [Function unknown]
Probab=83.53 E-value=26 Score=30.97 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=67.5
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEcc--CCCcccceEeecc-CCC---CCCceEECCCCCEEEEEecCCchhhhhhc
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIEN-LPG---GPDNINLAPDGSFWISLIKMNSSAVETVH 144 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~-~~~---~p~~i~~d~dG~l~va~~~~~~~~~~~~~ 144 (224)
-|...|||.+.. .++....+.|..|+.. +........+... ..+ .|---++|++-++.+.....
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~--------- 441 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP--------- 441 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC---------
Confidence 467789998877 6677778899999873 1111111111111 111 35566788887765554444
Q ss_pred cChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE-EEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 145 SSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI-IREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 145 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~-~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
..|-.||+.|+- +-.+++|.-..++.+...-+-++.+..++..+..|.++.
T Consensus 442 ---------------------------r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 442 ---------------------------RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ---------------------------cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 358899988654 677788865433333333333555666666666666653
No 250
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=83.14 E-value=5.5 Score=21.52 Aligned_cols=30 Identities=17% Similarity=-0.054 Sum_probs=21.7
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHW 97 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~ 97 (224)
.....+.|+++|+++ .+++-...+.|..|+
T Consensus 10 h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 345668999999987 555555677877764
No 251
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=83.08 E-value=17 Score=31.64 Aligned_cols=62 Identities=10% Similarity=-0.006 Sum_probs=36.6
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK 134 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~ 134 (224)
.....++++|... -|++.+..+.|..++..-. .+.+++. +..-.+..+.+-|.-.+.++.+.
T Consensus 181 eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~--kee~vL~-GHgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 181 EAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP--KEERVLR-GHGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred hhhheeccCCCCc-eeEEecCCCeEEEEeccCC--chhheec-cCCCCcceeccCCccceeEEccC
Confidence 4457899999654 8999999999988886421 2233432 21224555555554334444333
No 252
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.76 E-value=18 Score=30.53 Aligned_cols=67 Identities=24% Similarity=0.201 Sum_probs=43.6
Q ss_pred eEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE-eCCCC-eEEEEecCcccc--ceeEEecCCCEEEEEeCCCC
Q 046107 16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY-DPSSK-QVSIVLEGLYFA--NGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 16 v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~g-~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~~~ 91 (224)
|+..-+|++..|-+ ..|+|.|+ |..+| .+..+-.+...+ .-|+++||..+| .+.+.++
T Consensus 187 v~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L-avsSdKg 248 (346)
T KOG2111|consen 187 VALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL-AVSSDKG 248 (346)
T ss_pred EEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE-EEEcCCC
Confidence 34445788777753 36888774 44334 333444444444 589999999744 4446889
Q ss_pred eEEEEEccC
Q 046107 92 RCIKHWLKL 100 (224)
Q Consensus 92 ~I~~~~~~~ 100 (224)
.|..|.+.+
T Consensus 249 TlHiF~l~~ 257 (346)
T KOG2111|consen 249 TLHIFSLRD 257 (346)
T ss_pred eEEEEEeec
Confidence 999999875
No 253
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=82.41 E-value=4.5 Score=36.41 Aligned_cols=69 Identities=19% Similarity=0.102 Sum_probs=40.5
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCC
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
.+|..++.+||....+.+. +|.|=.++.++-++. .+.+-+.+.--++|+|||+ ..|+-.-.
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-YIVTGGED 353 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence 5678888888887777643 454444443322221 1123455666789999998 44444444
Q ss_pred CeEEEEEc
Q 046107 91 FRCIKHWL 98 (224)
Q Consensus 91 ~~I~~~~~ 98 (224)
.-|.+|..
T Consensus 354 DLVtVwSf 361 (636)
T KOG2394|consen 354 DLVTVWSF 361 (636)
T ss_pred ceEEEEEe
Confidence 55555554
No 254
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.21 E-value=13 Score=32.02 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=44.7
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...+.++|-+..|..+....+.|+.||+..... ..++.. ...++.|++.|++..+++....
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~---~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVIL---TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCc-cceeee---eccccceecCccccceeecccc
Confidence 357788898877888888889999999975321 123332 3578999999988777776665
No 255
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.16 E-value=46 Score=31.40 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=49.2
Q ss_pred eeeeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107 3 KIHLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD 81 (224)
Q Consensus 3 ~~~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~ 81 (224)
+.|.|.. +..-|++.| |.+.|++= .-+|.+=-|+....++....+-......+++.|||+
T Consensus 404 ~~F~Hnd--fVTcVaFnPvDDryFiSG-----------------SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk 464 (712)
T KOG0283|consen 404 KVFSHND--FVTCVAFNPVDDRYFISG-----------------SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK 464 (712)
T ss_pred eEEecCC--eeEEEEecccCCCcEeec-----------------ccccceEEeecCcCeeEeehhhhhhheeEEeccCCc
Confidence 4555543 445688888 55666662 235544334433345554455567778999999999
Q ss_pred EEEEEeCCCCeEEEEEccCC
Q 046107 82 FVVVCESWKFRCIKHWLKLG 101 (224)
Q Consensus 82 ~Lyv~~~~~~~I~~~~~~~~ 101 (224)
...|.. ..|.+..|+..+.
T Consensus 465 ~avIGt-~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 465 GAVIGT-FNGYCRFYDTEGL 483 (712)
T ss_pred eEEEEE-eccEEEEEEccCC
Confidence 666665 5567777887653
No 256
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.95 E-value=35 Score=29.94 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=33.1
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++..++||+.+.|. ..+.+++-+.+|... .+...........++.+.++|.+|++...+
T Consensus 243 ~v~~~~dG~~~~vg--~~G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G 301 (398)
T PLN00033 243 TVNRSPDGDYVAVS--SRGNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRGG 301 (398)
T ss_pred eEEEcCCCCEEEEE--CCccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCCc
Confidence 45667777633343 234566655544211 122211223456788889999999987654
No 257
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.81 E-value=19 Score=30.24 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=43.9
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMN 136 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~ 136 (224)
.....|+|||.-+.++.+.++.+.|..|+++....-..+... ...+-+-.+++..||. +|.+...+.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccCCc
Confidence 344578999955568889999999999998642111112211 2334457888988886 777766653
No 258
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=81.46 E-value=29 Score=28.65 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=39.6
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...-|-|+++-+++ +|+..++.++|-...-- .+.....+. --+..--.|.+||+|+.+......
T Consensus 147 ~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~si~-AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 147 KFEVNEISWNNSND-LFFLTNGLGCVEILSYP--SLKPVQSIK-AHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred cceeeeeeecCCCC-EEEEecCCceEEEEecc--ccccccccc-cCCcceEEEEECCCCceEeecccc
Confidence 34568899998776 88877777776655431 122222221 112344567889999988776654
No 259
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.13 E-value=31 Score=28.86 Aligned_cols=52 Identities=8% Similarity=-0.138 Sum_probs=31.4
Q ss_pred CceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCCC----CeEEEEEccC
Q 046107 48 HGQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFVVVCESWK----FRCIKHWLKL 100 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~Lyv~~~~~----~~I~~~~~~~ 100 (224)
...++++|+.+.+|+.+.+- .......+..-++ .|||.-... ..+++|++..
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 45799999988888876421 1222233334455 599875322 2467888864
No 260
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=32 Score=28.96 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=35.3
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~ 135 (224)
-.+.+.++. ++.|+++. +..+..+|+.........-+. ...++..+..+. |+ .||+++..
T Consensus 88 l~~Dv~vse--~yvyvad~-ssGL~IvDIS~P~sP~~~~~l-nt~gyaygv~vs--Gn~aYVadldd 148 (370)
T COG5276 88 LFADVRVSE--EYVYVADW-SSGLRIVDISTPDSPTLIGFL-NTDGYAYGVYVS--GNYAYVADLDD 148 (370)
T ss_pred hhheeEecc--cEEEEEcC-CCceEEEeccCCCCcceeccc-cCCceEEEEEec--CCEEEEeeccC
Confidence 344666764 57999995 456788888753211111122 122455666664 54 89999765
No 261
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.79 E-value=37 Score=29.45 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=58.4
Q ss_pred ceEEEEeCCCC-----eEEEEecCccccceeEEecCCCEEEE-Ee--CCCCeEEEEEccCCCcccce-EeeccCC-CCCC
Q 046107 49 GQLLRYDPSSK-----QVSIVLEGLYFANGVALSKHGDFVVV-CE--SWKFRCIKHWLKLGDKRDRE-IFIENLP-GGPD 118 (224)
Q Consensus 49 g~l~~~~~~~g-----~~~~~~~~~~~pngia~~~dg~~Lyv-~~--~~~~~I~~~~~~~~~~~~~~-~~~~~~~-~~p~ 118 (224)
..+|.++...+ ++..+......-...+-+. ++.+|+ ++ ...++|++++++........ +++.... ....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~ 330 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE 330 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence 56888887643 5665554444333333233 445665 44 34579999998754332333 4432222 1346
Q ss_pred ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCC
Q 046107 119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPN 191 (224)
Q Consensus 119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~ 191 (224)
++.+.. +.|++...... ..+|..++.+ ++....+..|.
T Consensus 331 ~~~~~~-~~Lvl~~~~~~----------------------------------~~~l~v~~~~~~~~~~~~~~p~ 369 (414)
T PF02897_consen 331 DVSLFK-DYLVLSYRENG----------------------------------SSRLRVYDLDDGKESREIPLPE 369 (414)
T ss_dssp EEEEET-TEEEEEEEETT----------------------------------EEEEEEEETT-TEEEEEEESSS
T ss_pred EEEEEC-CEEEEEEEECC----------------------------------ccEEEEEECCCCcEEeeecCCc
Confidence 666653 34555444431 1688888988 88888877765
No 262
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=79.67 E-value=51 Score=31.53 Aligned_cols=71 Identities=15% Similarity=0.015 Sum_probs=45.3
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---cCcccc-ceeEEecCCCEEEEEe
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---EGLYFA-NGVALSKHGDFVVVCE 87 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---~~~~~p-ngia~~~dg~~Lyv~~ 87 (224)
....++++..|++-|.-.+ .|.|-+++.+.|-...-. ...+.+ .|++++.-++ +.|+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S-----------------~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa 511 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYS-----------------KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSA 511 (910)
T ss_pred ceEEEEEeccCceEEEecc-----------------CCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEc
Confidence 3446777778887766432 577888888766433221 123333 5999987664 88888
Q ss_pred CCCCeEEEEEccC
Q 046107 88 SWKFRCIKHWLKL 100 (224)
Q Consensus 88 ~~~~~I~~~~~~~ 100 (224)
...|-+.-++...
T Consensus 512 ~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 512 GADGILKFWDFKK 524 (910)
T ss_pred cCcceEEEEecCC
Confidence 7777666666543
No 263
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.57 E-value=34 Score=28.34 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=28.7
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC-CCCCceEECC-CCCEEEEEecC
Q 046107 75 ALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-GGPDNINLAP-DGSFWISLIKM 135 (224)
Q Consensus 75 a~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~-dG~l~va~~~~ 135 (224)
..++++..+|... .++..+.+|+.. ..-++....+ +..-+-++++ +|.+|++...+
T Consensus 100 ~~d~~~glIycgs-hd~~~yalD~~~----~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G 157 (354)
T KOG4649|consen 100 QCDFDGGLIYCGS-HDGNFYALDPKT----YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAG 157 (354)
T ss_pred EEcCCCceEEEec-CCCcEEEecccc----cceEEecccCCceeccceecCCCceEEEEeccc
Confidence 4456666445443 445566666542 1122221111 1223446666 78899988766
No 264
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=79.22 E-value=32 Score=32.71 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=46.8
Q ss_pred CCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCC----cccceEe----eccCCC
Q 046107 45 GEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGD----KRDREIF----IENLPG 115 (224)
Q Consensus 45 ~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~----~~~~~~~----~~~~~~ 115 (224)
+...+-+.++...+++ +++.+.+..| -+|+++||++ +|..-...++|..+...+-. ....... ....-+
T Consensus 269 GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 3445555555555555 4455555555 5999999997 88777778999888763211 0000000 001224
Q ss_pred CCCceEECCC
Q 046107 116 GPDNINLAPD 125 (224)
Q Consensus 116 ~p~~i~~d~d 125 (224)
.+.++++||.
T Consensus 347 l~t~~~idpr 356 (792)
T KOG1963|consen 347 LTTGVSIDPR 356 (792)
T ss_pred cceeEEEcCC
Confidence 6789999984
No 265
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.11 E-value=6.3 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=12.7
Q ss_pred ceeEEecCCCEEEEEeCC
Q 046107 72 NGVALSKHGDFVVVCESW 89 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~ 89 (224)
...+++|||++|+++...
T Consensus 12 ~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEE-TTSSEEEEEEEC
T ss_pred cCEEEecCCCEEEEEecC
Confidence 467899999988766543
No 266
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=78.65 E-value=16 Score=32.81 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-eEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-QVSIVLEGLYFANGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~ 91 (224)
...+++.+|-++-|+-- .+|.|..||..+. .+..+.....+...|.+++||..|| +-...+
T Consensus 512 CyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDn 573 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDN 573 (705)
T ss_pred hhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCcc
Confidence 34566777777777642 2677888887522 2333444456667899999998665 445678
Q ss_pred eEEEEEccC
Q 046107 92 RCIKHWLKL 100 (224)
Q Consensus 92 ~I~~~~~~~ 100 (224)
+|..+|+..
T Consensus 574 tvRcWDlre 582 (705)
T KOG0639|consen 574 TVRCWDLRE 582 (705)
T ss_pred ceeehhhhh
Confidence 999999863
No 267
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=78.11 E-value=8.2 Score=34.96 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
-+|+|.-+|... .++......-.|+-++|+|+|. +++..+.+|+|..||..
T Consensus 279 ~DgSiiLyD~~~-~~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTR-GVTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCC-CeeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 478888888763 4555555667799999999997 66666678999999975
No 268
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=60 Score=30.19 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=19.6
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHW 97 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~ 97 (224)
-.-+|.-++-+|+|+++-|+. .++-..|.
T Consensus 350 ~eiyPq~L~hsPNGrfV~Vcg--dGEyiIyT 378 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVCG--DGEYIIYT 378 (794)
T ss_pred cccchHHhccCCCCcEEEEec--CccEEEEE
Confidence 345688999999998776664 34444443
No 269
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=77.64 E-value=23 Score=28.54 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=36.0
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE-eCCCCe-----E-EEE-ecCccccceeEEecCCCE
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY-DPSSKQ-----V-SIV-LEGLYFANGVALSKHGDF 82 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~g~-----~-~~~-~~~~~~pngia~~~dg~~ 82 (224)
+....|.++++|.||..+ ++|.+++. .|+.+. . ..+ ..+-..+.-|.++|+|.
T Consensus 130 ~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~- 190 (229)
T PF14517_consen 130 NDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN- 190 (229)
T ss_dssp GGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--
T ss_pred ccceEEEeCCCccEEEEc------------------CCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-
Confidence 334556667777777765 24566665 333221 1 111 23445577889999986
Q ss_pred EEEEeCCCCeEEEEEcc
Q 046107 83 VVVCESWKFRCIKHWLK 99 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~ 99 (224)
||..+ ..+.|+|+...
T Consensus 191 L~~V~-~~G~lyr~~~p 206 (229)
T PF14517_consen 191 LWAVK-SNGKLYRGRPP 206 (229)
T ss_dssp EEEE--ETTEEEEES--
T ss_pred EEEEe-cCCEEeccCCc
Confidence 88874 56789988764
No 270
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.23 E-value=43 Score=28.17 Aligned_cols=64 Identities=9% Similarity=-0.047 Sum_probs=44.0
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
...+-+.|+|||. .+++....++|+.++..|.. .+.-+. .+-.+...++.+.+||+..++.+..
T Consensus 48 geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdc-eN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 48 GEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDC-ENFWVL-KGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred ceEEEEEECCCCC-eEeecCCcceEEEEeccccc-cceeee-ccccceeEeeeeccCCCEEEEecCC
Confidence 3346789999986 88998899999999976531 111111 1223456788888999877776665
No 271
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=75.78 E-value=45 Score=27.68 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=37.4
Q ss_pred ceeEEecCCCEEE-EEe---CCCCeEEEEEccCCC--cccceEeec--cCCCCCCceEECCCCCEEEEEecC
Q 046107 72 NGVALSKHGDFVV-VCE---SWKFRCIKHWLKLGD--KRDREIFIE--NLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 72 ngia~~~dg~~Ly-v~~---~~~~~I~~~~~~~~~--~~~~~~~~~--~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.++.|+.+|+.+. .++ .....|..|++.... ....+.+.. .....+.-..+++-|...++.+..
T Consensus 97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 4777999887443 333 124567888875211 111111111 122467778888889888888777
No 272
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=75.06 E-value=30 Score=33.50 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=45.3
Q ss_pred ceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEE-Ee-C---CCCeEEEEEccCCCcccceEeeccCCCCCCceEE
Q 046107 49 GQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVV-CE-S---WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL 122 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv-~~-~---~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 122 (224)
++|...|.++...+.+ ...-.-.-..++||||++|-. +. . .+..|++-+++....+..+.-.+ -...|+.=..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaiprwrv~ 407 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPRWRVL 407 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccceEec
Confidence 4666666664344433 322222235689999998844 33 2 24469998887422222222222 2335655544
Q ss_pred CCCCC--EEEEEecCCc
Q 046107 123 APDGS--FWISLIKMNS 137 (224)
Q Consensus 123 d~dG~--l~va~~~~~~ 137 (224)
..-.+ +||++.+.+.
T Consensus 408 e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 408 ENGDTVIVYVSDASNNK 424 (912)
T ss_pred CCCCeEEEEEcCCCCCc
Confidence 42222 6777665543
No 273
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=74.60 E-value=23 Score=32.92 Aligned_cols=63 Identities=16% Similarity=-0.085 Sum_probs=39.1
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC---CCCCCceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL---PGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~dG~l~va~~~~ 135 (224)
-...-||||+|||+ ...+-...++|.+|.+... .+.+.++. .+.---|.+.=||++.++.+-.
T Consensus 720 tdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~----e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSR----EQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred cCceeEEEECCCCc-ceeeeecCceEEEeCCCCC----CCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 34556999999998 5555567899999998631 12223221 1233456666778866665443
No 274
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=74.53 E-value=24 Score=30.11 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=25.3
Q ss_pred CceEEEEeCC-CCeEEEEecCccccc-eeEEecCCCEEEEEeC
Q 046107 48 HGQLLRYDPS-SKQVSIVLEGLYFAN-GVALSKHGDFVVVCES 88 (224)
Q Consensus 48 ~g~l~~~~~~-~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~ 88 (224)
.-.||+++.+ +++++.+. .....+ .+.+||||+++..+.+
T Consensus 306 ~r~lY~v~~~~~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLT-CEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESS-TTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEecc-CCCCCceEEEECCCCCEEEEEEc
Confidence 4468888887 67666543 333444 8888998886655543
No 275
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=74.24 E-value=49 Score=27.44 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=41.5
Q ss_pred ccceeEEecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecC
Q 046107 70 FANGVALSKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.-..+|++|- |. ++.+......|..+...+...-..+...+. -....+.+|+.|.|++.++..-.
T Consensus 16 r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4568899997 54 777777778888887763111122222322 12357899999999966665544
No 276
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.69 E-value=68 Score=28.80 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=16.0
Q ss_pred ceEEEEeCCCCeEEEEe--cC--ccccceeEEecCCCEEEEEe
Q 046107 49 GQLLRYDPSSKQVSIVL--EG--LYFANGVALSKHGDFVVVCE 87 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~--~~--~~~pngia~~~dg~~Lyv~~ 87 (224)
..+..+|.- |++.... .. ...=+.+...|+|+.|+++.
T Consensus 167 ~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 167 NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 345566665 4432221 11 12235677888888776665
No 277
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=73.67 E-value=56 Score=27.84 Aligned_cols=71 Identities=20% Similarity=0.074 Sum_probs=44.8
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC---CeEE--EEecCccccceeEEecCCCEEEEE
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS---KQVS--IVLEGLYFANGVALSKHGDFVVVC 86 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~---g~~~--~~~~~~~~pngia~~~dg~~Lyv~ 86 (224)
...++++.+||.-++|-.. ++.|-.++.+. .+.+ ...-....|.-++|.||=+.+.|+
T Consensus 88 ~vt~~~FsSdGK~lat~~~-----------------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISG-----------------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ceeeeEEcCCCceeEEEeC-----------------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 3468889899987776432 33333333210 0111 011134578999999999888888
Q ss_pred eCCCCeEEEEEcc
Q 046107 87 ESWKFRCIKHWLK 99 (224)
Q Consensus 87 ~~~~~~I~~~~~~ 99 (224)
-...+.++.|.+.
T Consensus 151 ~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 151 VKRGNKLCVYKLV 163 (420)
T ss_pred EccCCEEEEEEee
Confidence 8888888888764
No 278
>PHA02790 Kelch-like protein; Provisional
Probab=73.33 E-value=69 Score=28.71 Aligned_cols=50 Identities=8% Similarity=-0.083 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCeEEEEecCccccc-e-eEEecCCCEEEEEeCC---CCeEEEEEccC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFAN-G-VALSKHGDFVVVCESW---KFRCIKHWLKL 100 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~pn-g-ia~~~dg~~Lyv~~~~---~~~I~~~~~~~ 100 (224)
..+.++++.+++|+.+.+ +..|. + -+..-+| .|||.-.. ...+.+|++..
T Consensus 331 ~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS-LLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CceEEEECCCCeEEECCC-CCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCC
Confidence 457889987777876542 22222 1 1222345 59998532 24577788754
No 279
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.10 E-value=51 Score=27.05 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=62.4
Q ss_pred cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEE-ecCCCEEE
Q 046107 8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVAL-SKHGDFVV 84 (224)
Q Consensus 8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~-~~dg~~Ly 84 (224)
.++-..|.+.++| .+.|+++ .+++.+|++|..+|+.++...+ -.+.+.++. +..++ ++
T Consensus 112 ~evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-il 172 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-IL 172 (325)
T ss_pred ccCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-ee
Confidence 3455678888886 4567766 2688999999988988876544 456667665 44554 32
Q ss_pred EEeCCCCeEEEEEccCCCcccceEe--eccC-CCCCCc----eEECCCCCEEEEEecCC
Q 046107 85 VCESWKFRCIKHWLKLGDKRDREIF--IENL-PGGPDN----INLAPDGSFWISLIKMN 136 (224)
Q Consensus 85 v~~~~~~~I~~~~~~~~~~~~~~~~--~~~~-~~~p~~----i~~d~dG~l~va~~~~~ 136 (224)
+-.-.+.+..++..+.+ ..+++ ++.. --.|+. ++++-+-.+.++..+++
T Consensus 173 -sG~EDGtvRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 173 -SGAEDGTVRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK 228 (325)
T ss_pred -ecCCCccEEEEeccccc--eeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc
Confidence 33345677777765421 12221 0110 013332 45665666777766663
No 280
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.03 E-value=51 Score=27.04 Aligned_cols=32 Identities=13% Similarity=-0.090 Sum_probs=25.9
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLG 101 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~ 101 (224)
...|.+-++|.++.|+.+- ..++++.+++.++
T Consensus 115 PeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G 146 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAG-GDGVIYQVDLEDG 146 (325)
T ss_pred CccceeEeccCCCcEEEec-CCeEEEEEEecCC
Confidence 4458999999888788887 7789999998753
No 281
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=72.65 E-value=18 Score=31.87 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=36.1
Q ss_pred eEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 50 QLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
+||.+...-.+...+. .-..+-|+|+|+++|++|+++-..-+++-|+...
T Consensus 405 rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 405 RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 5777775423444442 3457789999999999999998877888887753
No 282
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.58 E-value=12 Score=19.37 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=18.4
Q ss_pred ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE
Q 046107 19 ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS 62 (224)
Q Consensus 19 ~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~ 62 (224)
..+|.+|++. ..|.++.+|.++|+..
T Consensus 4 ~~~~~v~~~~------------------~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 4 LSDGTVYVGS------------------TDGTLYALDAKTGEIL 29 (33)
T ss_pred EECCEEEEEc------------------CCCEEEEEEcccCcEE
Confidence 3467788875 3588999998767643
No 283
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.13 E-value=56 Score=26.69 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=37.1
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~ 135 (224)
..-..|.++ + ...|+-+-.+.+..|++..+. ... +..+.| +.+.+.+||+.-++..-.
T Consensus 146 D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~-----l~s-Dy~g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 146 DGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGT-----LSS-DYFGHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred CceeEEEec--c-cEEEeeccCCcEEEEEeecce-----eeh-hhcCCcceeEEecCCCCEEEEeecc
Confidence 333455554 3 477888888999999986322 222 222344 889999999977665544
No 284
>PLN02193 nitrile-specifier protein
Probab=70.54 E-value=79 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFA----NGVALSKHGDFVVVCESW-----KFRCIKHWLKL 100 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~p----ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~ 100 (224)
..+|++|+.+.+++.+......| .+.+...-++.|||--.. .+.+++|++..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 35899999877787543221222 232222223459886432 35799999864
No 285
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=70.46 E-value=40 Score=29.43 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=51.6
Q ss_pred eEEEEeC---CCC--eEEEE---ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCc----c----cceEeec--
Q 046107 50 QLLRYDP---SSK--QVSIV---LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDK----R----DREIFIE-- 111 (224)
Q Consensus 50 ~l~~~~~---~~g--~~~~~---~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~----~----~~~~~~~-- 111 (224)
++|++.. +++ +++-+ ......-|.+.++|+|+ |.-+-...++|..+-...... . ..+.|..
T Consensus 39 riW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k 117 (434)
T KOG1009|consen 39 RIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKK 117 (434)
T ss_pred eeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEE
Confidence 5676663 222 34432 23455679999999998 878877888887766541000 0 0111211
Q ss_pred ---cCCCCCCceEECCCCCEEEEEecC
Q 046107 112 ---NLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 112 ---~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+....+..+++.+|+++.++....
T Consensus 118 ~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 118 VLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred EecccccchhhhhccCCCceeeeeecc
Confidence 112367899999999888877666
No 286
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=70.29 E-value=16 Score=20.00 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.2
Q ss_pred EEEEEECCCCcEEEEEe
Q 046107 172 AKVVKVSANGSIIREFN 188 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~~~ 188 (224)
+.|+|++++|.. .+++
T Consensus 17 GTvf~~~~~g~~-t~L~ 32 (34)
T TIGR03803 17 GTLYRLSTAGGT-TVLH 32 (34)
T ss_pred eeEEEEcCCCCe-EEEE
Confidence 899999999988 5543
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=69.83 E-value=1.2e+02 Score=29.94 Aligned_cols=85 Identities=6% Similarity=0.038 Sum_probs=50.3
Q ss_pred eEEE-EeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 50 QLLR-YDPSSKQVSIVLEGLYF-ANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 50 ~l~~-~~~~~g~~~~~~~~~~~-pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
+.+| |+.+ |++....+...+ -..++|.|.|+.|-.+.. ....|.-|.-+|-.-++...-.+........+.+++|
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 4444 4554 665555443333 347899999986655553 3456777877774333332211111224588999999
Q ss_pred CCEEEEEecC
Q 046107 126 GSFWISLIKM 135 (224)
Q Consensus 126 G~l~va~~~~ 135 (224)
+++.......
T Consensus 316 s~iLAv~~~~ 325 (928)
T PF04762_consen 316 SEILAVWLED 325 (928)
T ss_pred CCEEEEEecC
Confidence 9987776544
No 288
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=7.6 Score=34.37 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=51.0
Q ss_pred cceEE-ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe-EEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 046107 14 NDVIE-ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ-VSIV-LEGLYFANGVALSKHGDFVVVCESWK 90 (224)
Q Consensus 14 n~v~~-~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~-~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~ 90 (224)
+.+++ .+.|++|-..+...+ +...........++.++++.+.. .+.. .+.+.-|.||.++.|| +.|+++..+
T Consensus 413 ~~l~vfhr~g~vwd~~sfd~~----f~~~~~~pi~~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdg-f~~~tdvas 487 (501)
T KOG3567|consen 413 NNLVVFHRGGHVWDGNSFDSK----FVYQQIGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDG-FYWVTDVAS 487 (501)
T ss_pred cceEEEccCCceEeechhhhh----hhhhcccccccceEEEEcCcchhhhhhccCCceecCCcceecCCC-cEEeecccc
Confidence 34443 456677777643110 11111122345578888876222 2212 3457789999999999 599999999
Q ss_pred CeEEEEEccC
Q 046107 91 FRCIKHWLKL 100 (224)
Q Consensus 91 ~~I~~~~~~~ 100 (224)
+++.++.+.+
T Consensus 488 h~v~k~k~~~ 497 (501)
T KOG3567|consen 488 HQVFKLKPNN 497 (501)
T ss_pred hhhhhccccc
Confidence 9999888764
No 289
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=1.2e+02 Score=29.70 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=55.9
Q ss_pred eEEEEeCCCCeEEEE-ecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107 50 QLLRYDPSSKQVSIV-LEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~-~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~ 127 (224)
.+||++.. ..|+.= ..+ ...-.++.++|.-+ |.++++-...|..|+++-. ...+.|-. ....-.-++.-|..|
T Consensus 231 KlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR--t~v~tfrr-endRFW~laahP~lN 305 (1202)
T KOG0292|consen 231 KLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR--TSVQTFRR-ENDRFWILAAHPELN 305 (1202)
T ss_pred eEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc--cceeeeec-cCCeEEEEEecCCcc
Confidence 57888864 455532 122 33345889999765 9999999999999998531 12334421 234556788888999
Q ss_pred EEEEEecCCc
Q 046107 128 FWISLIKMNS 137 (224)
Q Consensus 128 l~va~~~~~~ 137 (224)
+|.|.+.+..
T Consensus 306 LfAAgHDsGm 315 (1202)
T KOG0292|consen 306 LFAAGHDSGM 315 (1202)
T ss_pred eeeeecCCce
Confidence 9999998854
No 290
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.40 E-value=53 Score=29.92 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=46.2
Q ss_pred CCceEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC--CCCceEE
Q 046107 47 PHGQLLRYDPSSKQVSIVLEGLYFA--NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG--GPDNINL 122 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~ 122 (224)
..|.|.-+|+.+|++..... ...| -+.... .+. ||+.-+..+.++.+|.++++ .+|....++ ...=|..
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l~t-~g~-lvf~g~~~G~l~a~D~~TGe----~lw~~~~g~~~~a~P~ty 511 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHK-EDFPLWGGVLAT-AGD-LVFYGTLEGYFKAFDAKTGE----ELWKFKTGSGIVGPPVTY 511 (527)
T ss_pred CceeEEEEeCCCCceeeEec-CCCCCCCcceEE-CCc-EEEEECCCCeEEEEECCCCC----EeEEEeCCCCceecCEEE
Confidence 46889999999887664332 2233 233333 455 54445567899999987432 123212221 1122333
Q ss_pred CCCCCEEEEEecC
Q 046107 123 APDGSFWISLIKM 135 (224)
Q Consensus 123 d~dG~l~va~~~~ 135 (224)
..+|+.|++...+
T Consensus 512 ~~~G~qYv~~~~G 524 (527)
T TIGR03075 512 EQDGKQYVAVLSG 524 (527)
T ss_pred EeCCEEEEEEEec
Confidence 4579999987644
No 291
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.11 E-value=83 Score=27.48 Aligned_cols=106 Identities=9% Similarity=-0.029 Sum_probs=53.9
Q ss_pred cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc---cceeEEecCC--CEEE
Q 046107 10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF---ANGVALSKHG--DFVV 84 (224)
Q Consensus 10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~---pngia~~~dg--~~Ly 84 (224)
-...+|+.+.+||.+.++-.. ...+||..+. |..-...+.... -..+.|+.|+ ..||
T Consensus 186 ~~eV~DL~FS~dgk~lasig~----------------d~~~VW~~~~--g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~ 247 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA----------------DSARVWSVNT--GAALARKTPFSKDEMFSSCRFSVDNAQETLR 247 (398)
T ss_pred cCccccceeCCCCcEEEEecC----------------CceEEEEecc--CchhhhcCCcccchhhhhceecccCCCceEE
Confidence 455678999999987777532 2445665553 311111111111 2244555544 3577
Q ss_pred EEeC--CCCeEEEEEcc---CCCc-ccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 85 VCES--WKFRCIKHWLK---LGDK-RDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 85 v~~~--~~~~I~~~~~~---~~~~-~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++.. ..+.|..+++. +... ...+... .......|+++.||++..-....
T Consensus 248 laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~--~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 248 LAASQFPGGGVRLCDISLWSGSNFLRLRKKIK--RFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred EEEecCCCCceeEEEeeeeccccccchhhhhh--ccCcceeEEEcCCCcEEEEeccC
Confidence 6663 34556555543 1111 1111111 11246789999999977655444
No 292
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=67.37 E-value=46 Score=29.08 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=41.1
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.-.-++++|--..+..+....+.|..++...+ +.-+-++ -+.....|.+..||.++++....
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 34456788743347777778889998888542 2111122 24455788999999999988776
No 293
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=67.21 E-value=15 Score=30.33 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=44.1
Q ss_pred ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCCC
Q 046107 13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWKF 91 (224)
Q Consensus 13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~~ 91 (224)
.+++.+-+|+.|+.|--. ...++||.+.. ...- ++.-....-|.+||+||-. |..+.+...
T Consensus 254 v~gvrIRpD~KIlATAGW---------------D~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~ 315 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGW---------------DHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDA 315 (323)
T ss_pred ccceEEccCCcEEeeccc---------------CCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCCc-hhhhccCCc
Confidence 357888889999888522 13456666653 3222 2233346678999999954 777777788
Q ss_pred eEEEEEc
Q 046107 92 RCIKHWL 98 (224)
Q Consensus 92 ~I~~~~~ 98 (224)
+|..+++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 8876653
No 294
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=66.84 E-value=42 Score=29.95 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=55.2
Q ss_pred hccCCCCceEEEEeCCCCeEEEEecCc----------cc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee
Q 046107 42 LVEGEPHGQLLRYDPSSKQVSIVLEGL----------YF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI 110 (224)
Q Consensus 42 ~~~~~~~g~l~~~~~~~g~~~~~~~~~----------~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~ 110 (224)
.+...|...|.++.-.+|.++.+.... .. -++||++++|+ .-++....+++-.||+... .......
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~--~ql~t~~ 332 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF--YQLHTYR 332 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc--cccceee
Confidence 345566667777776667777653322 22 36999999996 6677777888888998652 1221221
Q ss_pred ccCCCCCCceEECCCCCEEEEEecC
Q 046107 111 ENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 111 ~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.+.....+++.+.|.+=++.+..
T Consensus 333 --tp~~a~~ls~SqkglLA~~~G~~ 355 (545)
T KOG1272|consen 333 --TPHPASNLSLSQKGLLALSYGDH 355 (545)
T ss_pred --cCCCccccccccccceeeecCCe
Confidence 23344778888777665554443
No 295
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=80 Score=26.74 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=34.0
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCC----ceEECCCCCEEEEEecC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPD----NINLAPDGSFWISLIKM 135 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~----~i~~d~dG~l~va~~~~ 135 (224)
.+..|+.++ |+++||++. ......+++.+.. .+ .+... ...|. .+++. ...-|++....
T Consensus 129 gyaygv~vs--Gn~aYVadl-ddgfLivdvsdps--sP-~lagr-ya~~~~d~~~v~IS-Gn~AYvA~~d~ 191 (370)
T COG5276 129 GYAYGVYVS--GNYAYVADL-DDGFLIVDVSDPS--SP-QLAGR-YALPGGDTHDVAIS-GNYAYVAWRDG 191 (370)
T ss_pred ceEEEEEec--CCEEEEeec-cCcEEEEECCCCC--Cc-eeeee-eccCCCCceeEEEe-cCeEEEEEeCC
Confidence 455677776 789999996 4456668876521 22 22211 12333 45553 34578887766
No 296
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=66.53 E-value=1.2e+02 Score=28.95 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=40.4
Q ss_pred cccceeEEecCCCEEEEEeCCCCeE-EEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCC
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRC-IKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I-~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~ 136 (224)
..-+++++++||.+||=. +.-++ .++.+.+ +. +.|...+.+...++.+.+|+++|......+
T Consensus 252 ~~V~~L~fS~~G~~LlSG--G~E~VLv~Wq~~T---~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSG--GREGVLVLWQLET---GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cccceeEEecCCceEeec--ccceEEEEEeecC---CC-cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 456789999999766533 33344 4444433 22 334433444558999999999999888774
No 297
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.17 E-value=1.2e+02 Score=28.56 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=63.3
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSS 146 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~ 146 (224)
....-.|+++-+++. |++.++.+.|.+++++|..+ .... +-..+-..+....++.+.++.+..++
T Consensus 178 HtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~ge~l---~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrt--------- 242 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDGEVL---LEMH-GHTNFVYSISMALSDGLIVSTGEDRT--------- 242 (745)
T ss_pred chhheeeeEEecCCC--eEeecCCceEEEEeccCcee---eeee-ccceEEEEEEecCCCCeEEEecCCce---------
Confidence 345567999998864 55667888999999976321 1111 11223455555555666676666521
Q ss_pred hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
-+++. .++...++..|.-. +. +.-+..+|.+++++.. ++|.+++
T Consensus 243 -------------------------lriW~---~~e~~q~I~lPtts-iW--sa~~L~NgDIvvg~SD-G~VrVfT 286 (745)
T KOG0301|consen 243 -------------------------LRIWK---KDECVQVITLPTTS-IW--SAKVLLNGDIVVGGSD-GRVRVFT 286 (745)
T ss_pred -------------------------EEEee---cCceEEEEecCccc-eE--EEEEeeCCCEEEeccC-ceEEEEE
Confidence 23333 33777888777533 11 2223457788887754 5565554
No 298
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=65.99 E-value=69 Score=28.17 Aligned_cols=115 Identities=8% Similarity=-0.006 Sum_probs=67.1
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN 148 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~ 148 (224)
..-+-++|++-...||.+-...+++..+|.... ..+.......-.+....+++.+-+...+|..+..
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D------------ 294 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD------------ 294 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCC------------
Confidence 345678888866669999999999999998742 1122111111123457888888777666665541
Q ss_pred HHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107 149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~ 223 (224)
+.|..+|.. -+.+-.+..+... +..+. ++..+++.++...+++-+.++
T Consensus 295 -----------------------~tV~LwDlRnL~~~lh~~e~H~de----v~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 295 -----------------------KTVALWDLRNLNKPLHTFEGHEDE----VFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred -----------------------CcEEEeechhcccCceeccCCCcc----eEEEEeCCCCCceeEecccCCcEEEEec
Confidence 455566643 1233334333332 33332 445677777777777666654
No 299
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.57 E-value=18 Score=31.59 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCceEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEe
Q 046107 45 GEPHGQLLRYDPSSKQVSIVLEGLY---FANGVALSKHGDFVVVCE 87 (224)
Q Consensus 45 ~~~~g~l~~~~~~~g~~~~~~~~~~---~pngia~~~dg~~Lyv~~ 87 (224)
+..+|+|+.++..+++++....... ..+.++|++-|+.|.-++
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 4568899999988888886654332 345778888887665554
No 300
>PLN02193 nitrile-specifier protein
Probab=65.27 E-value=1e+02 Score=27.53 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCeEEEEecCcc--cc---ceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLY--FA---NGVALSKHGDFVVVCESW-----KFRCIKHWLKL 100 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~--~p---ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~ 100 (224)
..++++|+.+.+++.+..... .| ..++.. + +.|||.-.. ...+.+|++..
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~-~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-E-ENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-C-CEEEEECCCCCCCCcceEEEEECCC
Confidence 468999998888887643211 12 233332 3 458887532 24577888754
No 301
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.44 E-value=1e+02 Score=27.36 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=40.6
Q ss_pred ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCeE
Q 046107 15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF-ANGVALSKHGDFVVVCESWKFRC 93 (224)
Q Consensus 15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~-pngia~~~dg~~Lyv~~~~~~~I 93 (224)
-+++.+||+.++|-. .+..|..++.++.+......+... --+++|-..-+.||.+... ..|
T Consensus 207 ~~avS~Dgkylatgg-----------------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D-rsv 268 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGG-----------------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD-RSV 268 (479)
T ss_pred EEEEcCCCcEEEecC-----------------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC-Cce
Confidence 577888988777731 123344666665443333333333 3588888766779988754 566
Q ss_pred EEEEcc
Q 046107 94 IKHWLK 99 (224)
Q Consensus 94 ~~~~~~ 99 (224)
..|.++
T Consensus 269 kvw~~~ 274 (479)
T KOG0299|consen 269 KVWSID 274 (479)
T ss_pred EEEehh
Confidence 666665
No 302
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=64.27 E-value=1.3e+02 Score=28.34 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=55.6
Q ss_pred hccCCCCceEEEEeCC--CCeEEEE--ecC----ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC
Q 046107 42 LVEGEPHGQLLRYDPS--SKQVSIV--LEG----LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL 113 (224)
Q Consensus 42 ~~~~~~~g~l~~~~~~--~g~~~~~--~~~----~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~ 113 (224)
++....+.++..+.|+ +|-+.-. ... ..+-.|..++|+++ .+++....+..+.+...+...-..+.++.+-
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccc
Confidence 4445556666666654 3333322 111 23345788999987 7888877777777763221111222233222
Q ss_pred CCCCCceEECCCCCEEEEEecC
Q 046107 114 PGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 114 ~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.....+++++|.|.++++.+-.
T Consensus 361 ~~~V~dv~W~psGeflLsvs~D 382 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLLSVSLD 382 (764)
T ss_pred cccceeeeecCCCCEEEEeccc
Confidence 3467899999999999998776
No 303
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=64.25 E-value=1.2e+02 Score=27.79 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=60.5
Q ss_pred eEEEEEccCCCcccceEeec-cCCC-CCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107 92 RCIKHWLKLGDKRDREIFIE-NLPG-GPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK 168 (224)
Q Consensus 92 ~I~~~~~~~~~~~~~~~~~~-~~~~-~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 168 (224)
.|++|+++++. .+-... ..+| ..+.+++|. +|.|=|+....... .....
T Consensus 249 ~I~kf~~~~~~---~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~-------------------------~~~~~ 300 (521)
T PF09826_consen 249 TIYKFALDGGK---IEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWW-------------------------WDSED 300 (521)
T ss_pred EEEEEEccCCc---EEEEEEEEECcEEcccccEeccCCEEEEEEecCccc-------------------------ccCCC
Confidence 58888887632 221111 1344 458888886 57777777654210 00122
Q ss_pred CceEEEEEECCCCcEEEEEeC-CCCCcccceeEEEEECCEEEEEeCCC-CeEEEeeC
Q 046107 169 GAAAKVVKVSANGSIIREFND-PNAKNISFVTSALEFQGNLYLASINS-NFIGKLPL 223 (224)
Q Consensus 169 ~~~~~v~~~~~~G~~~~~~~~-~~g~~~~~~t~~~~~~g~lyv~~~~~-~~i~~~~~ 223 (224)
...+.|+.+|++-+.+..+.. ..|+ .+-++-+-+++.||-++.. +=+.+++|
T Consensus 301 ~s~N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDL 354 (521)
T PF09826_consen 301 TSSNNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDL 354 (521)
T ss_pred CceEEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEEC
Confidence 334899999988888887754 2243 3556667788888887664 55555554
No 304
>smart00284 OLF Olfactomedin-like domains.
Probab=63.75 E-value=82 Score=25.87 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCC------------ceEECCCCC--EEEEEecCCchhhhhhc
Q 046107 79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPD------------NINLAPDGS--FWISLIKMNSSAVETVH 144 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~------------~i~~d~dG~--l~va~~~~~~~~~~~~~ 144 (224)
+|. ||+....+..|.||++........+.+ ...++-+ ++|+|..|- ||.+....+.
T Consensus 83 ngs-lYY~~~~s~~iiKydL~t~~v~~~~~L--p~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~------- 152 (255)
T smart00284 83 NGS-LYFNKFNSHDICRFDLTTETYQKEPLL--NGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK------- 152 (255)
T ss_pred Cce-EEEEecCCccEEEEECCCCcEEEEEec--CccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC-------
Q ss_pred cChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 145 SSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 145 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
-.|.++||+ -++...+..+--+ +....+..-=|.||++......-.++.
T Consensus 153 ---------------------------ivvSkLnp~tL~ve~tW~T~~~k--~sa~naFmvCGvLY~~~s~~~~~~~I~ 202 (255)
T smart00284 153 ---------------------------IVISKLNPATLTIENTWITTYNK--RSASNAFMICGILYVTRSLGSKGEKVF 202 (255)
T ss_pred ---------------------------EEEEeeCcccceEEEEEEcCCCc--ccccccEEEeeEEEEEccCCCCCcEEE
No 305
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=62.97 E-value=30 Score=29.45 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=46.5
Q ss_pred cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE---EEEec--CccccceeEEecCCCEEEEEeCCCCeEE
Q 046107 20 SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV---SIVLE--GLYFANGVALSKHGDFVVVCESWKFRCI 94 (224)
Q Consensus 20 ~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~---~~~~~--~~~~pngia~~~dg~~Lyv~~~~~~~I~ 94 (224)
+.+.+||.. |..+.|..-+..+...|.||.+|.+..+. +.+.. ....-.-.+++.||. +.|.....+.|+
T Consensus 304 ~~c~iWfir----f~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 304 PMCDIWFIR----FAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW 378 (385)
T ss_pred CccceEEEE----EeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Confidence 467888886 55454443333456678899988753322 12211 223334678999997 666666788999
Q ss_pred EEEc
Q 046107 95 KHWL 98 (224)
Q Consensus 95 ~~~~ 98 (224)
|++-
T Consensus 379 rwdr 382 (385)
T KOG1034|consen 379 RWDR 382 (385)
T ss_pred EEEe
Confidence 9874
No 306
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=62.14 E-value=96 Score=26.15 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=37.8
Q ss_pred CCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 47 PHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
.+-+|..+|..+|+... ......+-|.++...-|-.|..+-+..+.+..+|+.
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 35578888887665443 344566778777776776677777888888889886
No 307
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=61.41 E-value=99 Score=26.07 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=43.2
Q ss_pred CCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 45 GEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 45 ~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
+..+|.|-++|..++....+.+....-.+|...+-.+ ..|+-++.+.|-.+|+..
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 3457889999988776666666666677898887555 889999999999999864
No 308
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.49 E-value=1e+02 Score=25.79 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=41.1
Q ss_pred ceEEEEeCCCCeEEE---EecCcccc---ceeEEecCCCEEEEEeC-----CCCeEEEEEccCCCcccceEeeccCCCCC
Q 046107 49 GQLLRYDPSSKQVSI---VLEGLYFA---NGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFIENLPGGP 117 (224)
Q Consensus 49 g~l~~~~~~~g~~~~---~~~~~~~p---ngia~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p 117 (224)
..++++|.++.+++. ....+..+ .+.++ -++ .|||.-. ..+.+++|++... +.+.+. ..+..+
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~-~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~-~~p~~~ 161 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACY-KDG-TLYVGGGNRNGKPSNKSYLFNLETQ---EWFELP-DFPGEP 161 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECC-EEEEEeCcCCCccCceEEEEcCCCC---CeeECC-CCCCCC
Confidence 468888887565521 12223222 12333 344 5998743 2357899988642 222221 112112
Q ss_pred --CceEECCCCCEEEEEecC
Q 046107 118 --DNINLAPDGSFWISLIKM 135 (224)
Q Consensus 118 --~~i~~d~dG~l~va~~~~ 135 (224)
...++.-++.||+-.+..
T Consensus 162 r~~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGS 181 (323)
T ss_pred CCcceEEEECCEEEEEcCCC
Confidence 223334568899976543
No 309
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=59.62 E-value=1e+02 Score=26.70 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=41.2
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.+.+-..++++|- +..|++.+..+.|-.+|+..+.+ +.-..+.-....++++...--+.++.+..
T Consensus 150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~L---kltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQL---KLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeE---EEeecchhheeeeeeecccCceEEEecCC
Confidence 4566778999996 45888888888888899875332 11111222356788887665444444433
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=59.22 E-value=47 Score=28.83 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEc
Q 046107 59 KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWL 98 (224)
Q Consensus 59 g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~ 98 (224)
+..+.+.....+...++++||+++|.-+|.. .+|+..+.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~y 180 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRY 180 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEec
Confidence 3344445566777899999999988888764 45555443
No 311
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=59.06 E-value=1.8e+02 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=22.5
Q ss_pred cCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107 166 TGKGAAAKVVKVSANGSIIREFNDPNAK 193 (224)
Q Consensus 166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~ 193 (224)
..=..|-+++.-|..||+++.++.|.|-
T Consensus 525 ~~y~~he~~lvads~gklv~~v~ap~gy 552 (912)
T TIGR02171 525 QKYGVHERLLVADSKGKLVRAVAAPAGY 552 (912)
T ss_pred ccccceeEEEEecCCCchhhhccCCCCc
Confidence 3334467899999999999999999884
No 312
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=58.63 E-value=1e+02 Score=28.28 Aligned_cols=83 Identities=20% Similarity=0.130 Sum_probs=51.2
Q ss_pred ceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 49 GQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
-++|.+.....+++.+.. +....|.+-++|.|+++.++... .+.+.-||.+- .+.+............+.+||-
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~---a~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY---ADLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred eeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch---hhhhhccCccccccccceECCC
Confidence 345666543344444322 34778999999999998888743 56677777652 1111211111224578899999
Q ss_pred CCEEEEEec
Q 046107 126 GSFWISLIK 134 (224)
Q Consensus 126 G~l~va~~~ 134 (224)
|++.++...
T Consensus 549 GRYvvT~ss 557 (698)
T KOG2314|consen 549 GRYVVTSSS 557 (698)
T ss_pred CCEEEEeee
Confidence 998887643
No 313
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=58.48 E-value=29 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=19.2
Q ss_pred CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 181 GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 181 G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
|+.+-.+..+. . ..+..+..++.||+++. +..+..++.
T Consensus 1 G~~~W~~~~~~-~---~~~~~~v~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGG-P---IWSSPAVAGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-T-TSEEEEEET
T ss_pred CceeEEEECCC-C---cCcCCEEECCEEEEEcC-CCEEEEEeC
Confidence 44555554432 2 12344667899999998 466666653
No 314
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=57.04 E-value=1.6e+02 Score=26.97 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCCCceEEEEeCCCCeEEEEecCcccccee---EEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 45 GEPHGQLLRYDPSSKQVSIVLEGLYFANGV---ALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 45 ~~~~g~l~~~~~~~g~~~~~~~~~~~pngi---a~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
+.+.|.|+-++..+|+++........++++ ..+.+-..|| +.....++..+...... -.+.|.. ....+-.++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~--~~~~~~~-~~~~~~sl~ 151 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKV--IIRIWKE-QKPLVSSLC 151 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccce--eeeeecc-CCCccceEE
Confidence 456788998998778888766544444433 2233323233 33344566666554311 1223322 234678999
Q ss_pred ECCCCCEEEEEec
Q 046107 122 LAPDGSFWISLIK 134 (224)
Q Consensus 122 ~d~dG~l~va~~~ 134 (224)
+.+||.+.+....
T Consensus 152 is~D~~~l~~as~ 164 (541)
T KOG4547|consen 152 ISPDGKILLTASR 164 (541)
T ss_pred EcCCCCEEEeccc
Confidence 9999988876543
No 315
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=20 Score=31.81 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=19.1
Q ss_pred CCCCceEECCCCCEEEEEecC
Q 046107 115 GGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 115 ~~p~~i~~d~dG~l~va~~~~ 135 (224)
..|-|+.+|.||..|+.+-..
T Consensus 467 ylphgl~~dkdgf~~~tdvas 487 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVAS 487 (501)
T ss_pred ecCCcceecCCCcEEeecccc
Confidence 479999999999999999877
No 316
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=56.98 E-value=22 Score=29.41 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=42.2
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
+-+|+.+-||++ ++.+..+.++|..|.-... ....++. .-.+..+.+++.++-++..+....
T Consensus 253 Gv~gvrIRpD~K-IlATAGWD~RiRVyswrtl--~pLAVLk-yHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL--NPLAVLK-YHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred CccceEEccCCc-EEeecccCCcEEEEEeccC--Cchhhhh-hhhcceeEEEeCCCCchhhhccCC
Confidence 347999999998 8899999999999987531 1122222 112456888888886666655544
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=55.70 E-value=67 Score=26.68 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=32.3
Q ss_pred eEEecCCCEEEEEeCCCCeEEEEEccCCC---cccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 74 VALSKHGDFVVVCESWKFRCIKHWLKLGD---KRDREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 74 ia~~~dg~~Lyv~~~~~~~I~~~~~~~~~---~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
++++.||+.|-+.. ..+|-.-..++.. .+..++-. +....-.-+++.+|+.+.+-....
T Consensus 3 ~~~~~~Gk~lAi~q--d~~iEiRsa~Ddf~si~~kcqVpk-D~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQ--DQCIEIRSAKDDFSSIIGKCQVPK-DPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred eeecCCCcEEEEEe--ccEEEEEeccCCchheeEEEecCC-CCCchheEEEECCCCcEEEEEcCC
Confidence 57788898555543 3344433333322 12233221 111244788999999988876665
No 318
>PF13964 Kelch_6: Kelch motif
Probab=55.38 E-value=29 Score=20.08 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=23.2
Q ss_pred cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe
Q 046107 20 SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL 65 (224)
Q Consensus 20 ~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~ 65 (224)
-+++||+.=-... . ......++++|+.+++++.+.
T Consensus 10 ~~~~iyv~GG~~~--------~---~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 10 VGGKIYVFGGYDN--------S---GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ECCEEEEECCCCC--------C---CCccccEEEEcCCCCcEEECC
Confidence 4678998732210 0 234578999999988888753
No 319
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=54.01 E-value=77 Score=26.34 Aligned_cols=28 Identities=11% Similarity=-0.172 Sum_probs=21.2
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.-++|+||+..|-++ ..++.|..|++-|
T Consensus 47 Rkl~WSpD~tlLa~a-~S~G~i~vfdl~g 74 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYA-ESTGTIRVFDLMG 74 (282)
T ss_pred eEEEECCCCcEEEEE-cCCCeEEEEeccc
Confidence 378999999844444 4678899998765
No 320
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=53.74 E-value=1.9e+02 Score=27.05 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=40.2
Q ss_pred eeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEE
Q 046107 5 HLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFV 83 (224)
Q Consensus 5 ~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~L 83 (224)
+.+..-+..++++..+.|+||=.. ..|.|..+|+.+++.....+. ..-.+.||++|.++.|
T Consensus 64 i~g~~drsIE~L~W~e~~RLFS~g------------------~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l 125 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAEGGRLFSSG------------------LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTIL 125 (691)
T ss_pred EecCCCCceeeEEEccCCeEEeec------------------CCceEEEEecccCceeEEecCCCcceeEEEeCCccceE
Confidence 344444555555555444554332 468888888876655544443 3444789999888777
Q ss_pred EEEe
Q 046107 84 VVCE 87 (224)
Q Consensus 84 yv~~ 87 (224)
-|..
T Consensus 126 ~Igc 129 (691)
T KOG2048|consen 126 AIGC 129 (691)
T ss_pred Eeec
Confidence 7774
No 321
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=53.69 E-value=36 Score=18.58 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.2
Q ss_pred EEEEEECCC-CcEEEEEeCC
Q 046107 172 AKVVKVSAN-GSIIREFNDP 190 (224)
Q Consensus 172 ~~v~~~~~~-G~~~~~~~~~ 190 (224)
+.|+.+|.+ |+.+-.+...
T Consensus 10 g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp SEEEEEETTTTSEEEEEESS
T ss_pred CEEEEEECCCCCEEEeeeCC
Confidence 689999965 9998888654
No 322
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=53.48 E-value=1.4e+02 Score=25.42 Aligned_cols=62 Identities=10% Similarity=-0.032 Sum_probs=35.7
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGS-FWISLIKM 135 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~ 135 (224)
.-.|+++|+..+-++ ..+++|..|...+..+-+ ..++.+ -...-.++.+.+..+ |-.+..+.
T Consensus 14 tchAwn~drt~iAv~-~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVS-PNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred eeeeecCCCceEEec-cCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCC
Confidence 456888888745444 567788888876533211 112211 123457788888875 44444444
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.13 E-value=1.3e+02 Score=25.00 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred eeccccccccceEEe-cCCcEEEEeCCCCCCcchhhhhhc-----------------cCCCCceEEEEeCCCCeEEEEec
Q 046107 5 HLCHLIRFANDVIEA-SDGSLYITVSSTKFAPKAYYLDLV-----------------EGEPHGQLLRYDPSSKQVSIVLE 66 (224)
Q Consensus 5 ~~~~~~~~~n~v~~~-~~G~ly~t~~~~~~~~~~~~~~~~-----------------~~~~~g~l~~~~~~~g~~~~~~~ 66 (224)
+|++++.--+-|++. -.|.+||-+..+ +..-|....+ -+.-++++|.+|+.+ +.-+...
T Consensus 55 iE~sa~vvgdfVV~GCy~g~lYfl~~~t--Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVyks 131 (354)
T KOG4649|consen 55 IECSAIVVGDFVVLGCYSGGLYFLCVKT--GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKS 131 (354)
T ss_pred eeeeeEEECCEEEEEEccCcEEEEEecc--hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEec
Confidence 556666533333333 378899987542 1111211111 112355666666652 1111221
Q ss_pred C--ccccceeEEec-CCCEEEEEeCCCCeEEEEEccC
Q 046107 67 G--LYFANGVALSK-HGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 67 ~--~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
. ...-.+.++++ ++ .||++.+ .+.+.+..++.
T Consensus 132 kcgG~~f~sP~i~~g~~-sly~a~t-~G~vlavt~~~ 166 (354)
T KOG4649|consen 132 KCGGGTFVSPVIAPGDG-SLYAAIT-AGAVLAVTKNP 166 (354)
T ss_pred ccCCceeccceecCCCc-eEEEEec-cceEEEEccCC
Confidence 1 11122456666 55 4888875 46777777653
No 324
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.12 E-value=1.1e+02 Score=29.43 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.4
Q ss_pred EEEEEECCC-CcEEEEEe
Q 046107 172 AKVVKVSAN-GSIIREFN 188 (224)
Q Consensus 172 ~~v~~~~~~-G~~~~~~~ 188 (224)
++|+.+|++ ||+.-.++
T Consensus 414 ~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQ 431 (764)
T ss_pred ceEEEEeCCCCceEEEec
Confidence 677788865 77665553
No 325
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.57 E-value=2.3e+02 Score=27.18 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=56.9
Q ss_pred cCCCCceEEEEeCCC----CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107 44 EGEPHGQLLRYDPSS----KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN 119 (224)
Q Consensus 44 ~~~~~g~l~~~~~~~----g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~ 119 (224)
.-...|.|..+|... .....+.+.....|-+.|++-+-.+.++-+..+.|-.||+.-.. ....+.. ......+
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~-nSESiRD 181 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRS-NSESIRD 181 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccc-cchhhhc
Confidence 345678888888652 11122334556678999998777799999999999999986321 1122221 2234577
Q ss_pred eEECCC-CCEEEEEecC
Q 046107 120 INLAPD-GSFWISLIKM 135 (224)
Q Consensus 120 i~~d~d-G~l~va~~~~ 135 (224)
+++.+. ++.|++...+
T Consensus 182 V~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDS 198 (839)
T ss_pred eeeccCCCceEEEecCC
Confidence 777764 6777777665
No 326
>PLN02153 epithiospecifier protein
Probab=51.14 E-value=1.5e+02 Score=24.98 Aligned_cols=52 Identities=13% Similarity=-0.026 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107 49 GQLLRYDPSSKQVSIVLEGLYFA----NGVALSKHGDFVVVCESW-----KFRCIKHWLKL 100 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~~~~p----ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~ 100 (224)
..++++|+.+.+++.+......| .+.+...-++.||+--.. .+.+++|++..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 46999999877787654322122 133222223358877421 24688898753
No 327
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=51.05 E-value=1.3e+02 Score=24.35 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=44.2
Q ss_pred ceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-c----Cc-cccceeEEecCCCEEEEEe
Q 046107 15 DVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-E----GL-YFANGVALSKHGDFVVVCE 87 (224)
Q Consensus 15 ~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~----~~-~~pngia~~~dg~~Lyv~~ 87 (224)
+|.+-| +|.||--. ..|+||.+|+.+|..+.+. . .+ ..+-|+.|.|-=++|.|..
T Consensus 31 GID~Rpa~G~LYgl~------------------~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 31 GIDFRPANGQLYGLG------------------STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred EEEeecCCCCEEEEe------------------CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc
Confidence 555555 67777663 3588999999988776662 1 12 2245888888555686664
Q ss_pred CCCCeEEEEEccC
Q 046107 88 SWKFRCIKHWLKL 100 (224)
Q Consensus 88 ~~~~~I~~~~~~~ 100 (224)
. .++=+|++++.
T Consensus 93 ~-~GqNlR~npdt 104 (236)
T PF14339_consen 93 N-TGQNLRLNPDT 104 (236)
T ss_pred c-CCcEEEECCCC
Confidence 3 45667888874
No 328
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=50.30 E-value=1.5e+02 Score=24.73 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=59.8
Q ss_pred eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cC-ccccceeEEecCCCE
Q 046107 6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EG-LYFANGVALSKHGDF 82 (224)
Q Consensus 6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~-~~~pngia~~~dg~~ 82 (224)
++..-+....||..|.|++..+- + | ++.+..+....++.+.+. ++ ...--+++++++|+
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~a-S--F--------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~- 118 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASA-S--F--------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN- 118 (312)
T ss_pred cccchheeeeeeecCCCcEEEEe-e--c--------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-
Confidence 34455677788888888844443 2 1 333333332234555432 22 23345999999998
Q ss_pred EEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECCCCCEEEEEecCC
Q 046107 83 VVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~ 136 (224)
++.+.+....|+.+..+. ....-..++.+. .--...+.+-|--.|+++..+.+
T Consensus 119 ~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 119 YLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred EEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcCCcceeEEeccCC
Confidence 555556677888888763 221111222111 11234555555555666666553
No 329
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.98 E-value=2.2e+02 Score=26.67 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=57.1
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCC---cccceEeec-cCC----CCCCceEECCCCCEEEEEecCCch
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGD---KRDREIFIE-NLP----GGPDNINLAPDGSFWISLIKMNSS 138 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~---~~~~~~~~~-~~~----~~p~~i~~d~dG~l~va~~~~~~~ 138 (224)
.-.+-..+++-...+.|+++-...++|..++++.+. ++...-... .+. .....+|..+.|.+.++.+-..
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-- 193 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-- 193 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc--
Confidence 345556777733445699999999999999997421 111111111 112 1346788888888888765542
Q ss_pred hhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEE
Q 046107 139 AVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSII 184 (224)
Q Consensus 139 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~ 184 (224)
.+.+. .|..++.+.++- .....-++++++.||..+
T Consensus 194 ~lr~w--Dprt~~kimkLr---------GHTdNVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 194 DLRLW--DPRTCKKIMKLR---------GHTDNVRVLLVNDDGTRL 228 (735)
T ss_pred ceEEe--ccccccceeeee---------ccccceEEEEEcCCCCeE
Confidence 11111 233222222211 111126888999988543
No 330
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=49.91 E-value=1.6e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=21.4
Q ss_pred EEEEEECCCC-cEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107 172 AKVVKVSANG-SIIREFNDPNAKNISFVTSALEFQGNLYLAS 212 (224)
Q Consensus 172 ~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~ 212 (224)
..|.++||.- ++...-..|... ..-..++..+++||+-.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~--r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG--TAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc--CCCceEEEECCEEEEEe
Confidence 4689999874 443322222111 12234456788999864
No 331
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=49.89 E-value=79 Score=25.61 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=35.3
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccc--eEeeccCCCCCCceEECCC-CCEEEEEe
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR--EIFIENLPGGPDNINLAPD-GSFWISLI 133 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~--~~~~~~~~~~p~~i~~d~d-G~l~va~~ 133 (224)
...-||.+.|....||-- ...++||.+++..+..... ..+...+.+.+-++.|+|- .+|-+-..
T Consensus 27 e~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred CeEEEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc
Confidence 334588999865558866 4568999999875322111 1111112334556666653 45555433
No 332
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.57 E-value=2e+02 Score=25.77 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=45.2
Q ss_pred ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecC
Q 046107 68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKM 135 (224)
Q Consensus 68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~ 135 (224)
-.+-...+++|..+.++|+-+-.+.|..|+..... + .+ .+...+.| ..+.+-|.|.+.++.+++
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~-~v-~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--S-RV-VELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCC--c-ee-EEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 45666788888777899999999999999986421 1 12 22223444 777777888888887776
No 333
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=48.21 E-value=1.4e+02 Score=31.32 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=18.7
Q ss_pred CceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEE
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVV 85 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv 85 (224)
+++||++++..+.|+...+....| +-+...-||+ ||-
T Consensus 381 d~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~-lYA 418 (1774)
T PF11725_consen 381 DDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGK-LYA 418 (1774)
T ss_pred cCceeeeccccceecCCCCcccchhhhhcccCCCc-eEe
Confidence 456777776655554321122222 2455555665 665
No 334
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=47.07 E-value=1.7e+02 Score=24.55 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=22.2
Q ss_pred EEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeC
Q 046107 172 AKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASI 213 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~ 213 (224)
..+.++|+....-..+..+........+.++..+++||+-.-
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 468999987544333322211111223233357899999643
No 335
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.99 E-value=82 Score=31.08 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=42.9
Q ss_pred cCCCCceEEEEeCCCCeEEEEec--Cc---cccceeEEecCCC-EEEEEeCCC--CeEEEEEccCCCcccceEeeccCCC
Q 046107 44 EGEPHGQLLRYDPSSKQVSIVLE--GL---YFANGVALSKHGD-FVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPG 115 (224)
Q Consensus 44 ~~~~~g~l~~~~~~~g~~~~~~~--~~---~~pngia~~~dg~-~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~ 115 (224)
....+|+...+|.+.. +.+.. .. ..-++|+|+||.. .|.++.-.. -.|..+|+.-. ....+++ +.-..
T Consensus 179 S~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~-~~H~~ 254 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKIL-EGHQR 254 (1049)
T ss_pred ccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhh-ccccc
Confidence 4456778888887632 22221 11 1234899999875 345554322 24666665421 1112332 11112
Q ss_pred CCCceEECCCC-CEEEEEecC
Q 046107 116 GPDNINLAPDG-SFWISLIKM 135 (224)
Q Consensus 116 ~p~~i~~d~dG-~l~va~~~~ 135 (224)
..-.|.+.+.+ ++.++.+..
T Consensus 255 GilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred ceeeeccCCCCchhhhcccCC
Confidence 34455555555 455554444
No 336
>PLN02153 epithiospecifier protein
Probab=44.93 E-value=1.9e+02 Score=24.36 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCeEEEEecC--cccc-----ceeEEecCCCEEEEEeCCC-----------CeEEEEEccC
Q 046107 49 GQLLRYDPSSKQVSIVLEG--LYFA-----NGVALSKHGDFVVVCESWK-----------FRCIKHWLKL 100 (224)
Q Consensus 49 g~l~~~~~~~g~~~~~~~~--~~~p-----ngia~~~dg~~Lyv~~~~~-----------~~I~~~~~~~ 100 (224)
..++++|+.+.+++.+..- ...| ...++. ++ .|||.-... +.|..|++..
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-EN-HVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CC-EEEEECCccCCCccCCCcccceEEEEECCC
Confidence 3588899887788765321 1112 133332 34 488864311 3577888753
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=44.87 E-value=3e+02 Score=26.68 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=61.8
Q ss_pred CceEEEEeCCCCeEEEEecCccccceeEEecCC-------CEEEEEeCCCCeEEEEEccCCCcccceEeecc--C-C-CC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHG-------DFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--L-P-GG 116 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg-------~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~-~-~~ 116 (224)
...||++|...|++-.-+.-.....=..+.|+. ..-|+.- +.+.|+++|+.-. +..-+.... . . ..
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl-s~n~lfriDpR~~--~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL-SDNSLFRIDPRLS--GNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE-CCCceEEeccCCC--CCceeeccccccccCCC
Confidence 457999998877754333221111012222221 2255554 4678999998621 111111111 1 1 13
Q ss_pred CCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHh-hchhhHHhhhhcCCCceEEEEEECCCCcEEE
Q 046107 117 PDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLE-EHPELINQLMSTGKGAAAKVVKVSANGSIIR 185 (224)
Q Consensus 117 p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~ 185 (224)
...++.+.+|.|-|+...+.-.+++ .+.+.++ .+|.+-+|| .=+-++.||+++-
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd------~~g~~AKT~lp~lG~pI---------~~iDvt~DGkwil 634 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYD------RLGKRAKTALPGLGDPI---------IGIDVTADGKWIL 634 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeec------ccchhhhhcCCCCCCCe---------eEEEecCCCcEEE
Confidence 4678888999999998877422222 1212222 256554552 2345567888753
No 338
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=48 Score=31.20 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=39.7
Q ss_pred cCCCCceEEEEeCCCCe-EEEEecCccccceeEEecCCCEEEEEeCCC-CeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 44 EGEPHGQLLRYDPSSKQ-VSIVLEGLYFANGVALSKHGDFVVVCESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 44 ~~~~~g~l~~~~~~~g~-~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
++...|.|-.+|...++ +..+.....-+..+.|+|-+. |++.... .-+-.+|.. +.+ +...+...+..-+-++
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~R--k~G-c~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIR--KKG-CSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE--Eeccccccccceehhhh--ccC-ceeeecCCcceeEEEe
Confidence 34456677677764332 222233344456788888764 3333221 112222221 011 1111212223446677
Q ss_pred ECCCCCEEEEEec
Q 046107 122 LAPDGSFWISLIK 134 (224)
Q Consensus 122 ~d~dG~l~va~~~ 134 (224)
+.|+|++.+....
T Consensus 162 lsP~Gr~v~~g~e 174 (825)
T KOG0267|consen 162 LSPDGRWVASGGE 174 (825)
T ss_pred ecCCCceeeccCC
Confidence 7888876555444
No 339
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=44.52 E-value=59 Score=19.00 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=20.6
Q ss_pred ceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 72 NGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
.-++++|..+.|.++ +.+++|..+++++
T Consensus 15 ~~~~w~P~mdLiA~~-t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 15 SCMSWCPTMDLIALG-TEDGEVLVYRLNW 42 (47)
T ss_pred EEEEECCCCCEEEEE-ECCCeEEEEECCC
Confidence 367899998844444 4678899998865
No 340
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=43.92 E-value=2.5e+02 Score=26.51 Aligned_cols=81 Identities=14% Similarity=0.011 Sum_probs=45.5
Q ss_pred eEEEEeCCCCeEEE-------EecCccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107 50 QLLRYDPSSKQVSI-------VLEGLYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121 (224)
Q Consensus 50 ~l~~~~~~~g~~~~-------~~~~~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 121 (224)
+|||+... |..+. +.-.......|.|+| .-+ +..+.+..-.|..+|+...+ ....+. +-.+..-++|
T Consensus 653 ~lWr~~a~-gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl~~~~--~~~~l~-gHtdqIf~~A 727 (1012)
T KOG1445|consen 653 NLWRLTAN-GLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDLANAK--LYSRLV-GHTDQIFGIA 727 (1012)
T ss_pred EEEEeccC-CCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeehhhhh--hhheec-cCcCceeEEE
Confidence 57888765 22111 112334455677776 222 33344445677778876422 122222 2234567899
Q ss_pred ECCCCCEEEEEecC
Q 046107 122 LAPDGSFWISLIKM 135 (224)
Q Consensus 122 ~d~dG~l~va~~~~ 135 (224)
+.++|+...+....
T Consensus 728 WSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 728 WSPDGRRIATVCKD 741 (1012)
T ss_pred ECCCCcceeeeecC
Confidence 99999988887766
No 341
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=43.84 E-value=2.1e+02 Score=24.57 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=21.1
Q ss_pred EEEEEECCCC-cEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107 172 AKVVKVSANG-SIIREFNDPNAKNISFVTSALEFQGNLYLAS 212 (224)
Q Consensus 172 ~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~ 212 (224)
..|.++|+.- ++...-..|... . ..+.++..+++||+-.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~-~-~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG-T-AGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC-C-CcceEEEECCEEEEEe
Confidence 4689999874 443321222111 1 2234456788999754
No 342
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=43.40 E-value=2.8e+02 Score=25.89 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=51.4
Q ss_pred ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCC
Q 046107 65 LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN 136 (224)
Q Consensus 65 ~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~ 136 (224)
+.+.--|.=|||++..+.+-|+...-+-|..|.+......+.+-+.=.....|.|+++-.|.-+.+-.+...
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGkqK 406 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGKQK 406 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecccc
Confidence 567788999999999998889987788899998754333333332111235899999988887777665543
No 343
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=42.66 E-value=1.5e+02 Score=26.59 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=47.3
Q ss_pred CCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 46 EPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 46 ~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
...|-+-..|-++|++- .+.++.....-++-.|-.. +.-.--.++.|..|.++-.. .-.+.++ -.+...++|+|+
T Consensus 228 ~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske-PLvKiLc--H~g~V~siAv~~ 303 (545)
T KOG1272|consen 228 SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE-PLVKILC--HRGPVSSIAVDR 303 (545)
T ss_pred ccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc-hHHHHHh--cCCCcceEEECC
Confidence 34566666666655432 2223444444555566543 33333345667777665311 0112222 134568999999
Q ss_pred CCCEEEEEecCC
Q 046107 125 DGSFWISLIKMN 136 (224)
Q Consensus 125 dG~l~va~~~~~ 136 (224)
+|++-++.+-.+
T Consensus 304 ~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 304 GGRYMATTGLDR 315 (545)
T ss_pred CCcEEeeccccc
Confidence 999888877663
No 344
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=42.53 E-value=1.3e+02 Score=27.40 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=13.9
Q ss_pred eeEEecCCCEEEEEeCC
Q 046107 73 GVALSKHGDFVVVCESW 89 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~ 89 (224)
=..|+|||.+++.+.+.
T Consensus 359 ~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEcCCCcEEEEEecc
Confidence 46799999988888765
No 345
>PRK13614 lipoprotein LpqB; Provisional
Probab=42.34 E-value=2.9e+02 Score=25.69 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=35.7
Q ss_pred cceeEEecCCCEEEEEeCCCC--eEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEec
Q 046107 71 ANGVALSKHGDFVVVCESWKF--RCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIK 134 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~ 134 (224)
...+.+|+||-++-+--...+ +|+.-.+.....+.+..+... ....+..+++-.++.|.|....
T Consensus 436 I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~ 505 (573)
T PRK13614 436 VKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKAS 505 (573)
T ss_pred eEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEecc
Confidence 457889999988855432233 366544321111222222111 1146788888888888887654
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=41.81 E-value=2e+02 Score=23.87 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=43.3
Q ss_pred ceEEEEeCCCC-----eEEEEe-cCccc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeeccCCCCCCce
Q 046107 49 GQLLRYDPSSK-----QVSIVL-EGLYF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIENLPGGPDNI 120 (224)
Q Consensus 49 g~l~~~~~~~g-----~~~~~~-~~~~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~~~p~~i 120 (224)
|+|+.++.... +++.+. ....+ +..|+-- +| +|.++- +++|+.|+++... +... .+. ..+.....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~-~~~-~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKK-AFY-DSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEE-EEE--BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhh-hee-cceEEEEEE
Confidence 88888886542 455442 22333 3455544 34 576665 4788888886533 2111 111 122344455
Q ss_pred EECCCCCEEEEEecCC
Q 046107 121 NLAPDGSFWISLIKMN 136 (224)
Q Consensus 121 ~~d~dG~l~va~~~~~ 136 (224)
..- +..+++++...+
T Consensus 136 ~~~-~~~I~vgD~~~s 150 (321)
T PF03178_consen 136 SVF-KNYILVGDAMKS 150 (321)
T ss_dssp EEE-TTEEEEEESSSS
T ss_pred ecc-ccEEEEEEcccC
Confidence 554 346888887763
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=40.66 E-value=58 Score=31.32 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=21.6
Q ss_pred cCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEc
Q 046107 66 EGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWL 98 (224)
Q Consensus 66 ~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~ 98 (224)
.+++.| -||.++.||++|..+. ...|..++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 455666 5999999999776664 346666664
No 348
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.48 E-value=1.3e+02 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=22.8
Q ss_pred cceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 71 ANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
..|+|+- ||+ .+|+--.+++|+.|...+
T Consensus 137 aEGLAvr-dG~-~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 137 AEGLAVR-DGD-ALVSFERDHRIWIYPVPP 164 (340)
T ss_pred cccceEe-cCc-eEEEeeccceeEEeccCC
Confidence 4689987 786 888888889999998753
No 349
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=39.47 E-value=1.7e+02 Score=27.25 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=56.9
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE-EEEecCccccceeEEecCCCEEEEEeCC
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV-SIVLEGLYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~-~~~~~~~~~pngia~~~dg~~Lyv~~~~ 89 (224)
...++|.....|..+.|.+. ....-.|+..+.+.... ..+..-...+..+.|+|-.-+||||..
T Consensus 522 k~i~~vtWHrkGDYlatV~~--------------~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq- 586 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMP--------------DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ- 586 (733)
T ss_pred CccceeeeecCCceEEEecc--------------CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-
Confidence 34456777777776666543 12233455555442221 112223345677889998888999964
Q ss_pred CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC-CEEEEEecCC
Q 046107 90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG-SFWISLIKMN 136 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG-~l~va~~~~~ 136 (224)
+.|..|++.-..+ .+.+.++ ......|++.+.| ++.++....+
T Consensus 587 -~~vRiYdL~kqel--vKkL~tg-~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 587 -RSVRIYDLSKQEL--VKKLLTG-SKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred -cceEEEehhHHHH--HHHHhcC-CeeeeeeeecCCCCeEEEecCCCe
Confidence 5677777642100 1111111 1134677777776 4666555543
No 350
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=38.97 E-value=3.5e+02 Score=25.78 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCeEEEEecCccccc----eeEEecCC-----CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGLYFAN----GVALSKHG-----DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPD 118 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~~~pn----gia~~~dg-----~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~ 118 (224)
+|++---+. +|+.+..++...+|| +|+++|.. +.+-|.|. +..+.-|.++|...+..+. +...|-
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-~qTLSFy~LsG~~Igk~r~----L~FdP~ 226 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-GQTLSFYQLSGKQIGKDRA----LNFDPC 226 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-cceeEEEEecceeeccccc----CCCCch
Confidence 455533332 354444444444444 88888743 35667774 4567777777744433222 223577
Q ss_pred ceEECCCCCEEEEEecC
Q 046107 119 NINLAPDGSFWISLIKM 135 (224)
Q Consensus 119 ~i~~d~dG~l~va~~~~ 135 (224)
.+..-++|.+.+-.+..
T Consensus 227 CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSD 243 (1081)
T ss_pred hheeccCCcEEEEccCC
Confidence 88888889866554443
No 351
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=3e+02 Score=24.94 Aligned_cols=49 Identities=16% Similarity=0.044 Sum_probs=37.8
Q ss_pred eEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 50 QLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 50 ~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
.||.++..++.+..+.+- ......+.++++|++|-|. +..+.|..+|..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG-~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVG-TSDGTVQIWDVK 247 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEe-ecCCeEEEEehh
Confidence 688888877877766543 5667899999999966655 467899999875
No 352
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.07 E-value=1.4e+02 Score=26.15 Aligned_cols=25 Identities=4% Similarity=-0.069 Sum_probs=19.1
Q ss_pred eeeeccccccccceEEecCCc-EEEE
Q 046107 3 KIHLCHLIRFANDVIEASDGS-LYIT 27 (224)
Q Consensus 3 ~~~~~~~~~~~n~v~~~~~G~-ly~t 27 (224)
.++.+.|+....++..+++|. +|+.
T Consensus 61 ~~~~~~p~~G~Sgi~~d~~~~~f~~l 86 (391)
T COG4222 61 LPFNGQPVGGFSGITYDPQGDGYWAL 86 (391)
T ss_pred cccCCCCCCceeeeEEccCCCeEEEE
Confidence 356778888889999999884 6654
No 353
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.96 E-value=3.1e+02 Score=24.47 Aligned_cols=80 Identities=8% Similarity=0.040 Sum_probs=52.4
Q ss_pred cCCCCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEE
Q 046107 44 EGEPHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL 122 (224)
Q Consensus 44 ~~~~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 122 (224)
.+..+-+|..+|.++|+...... ..+.-+.+.|+|..-.+.++-+..++|..++..... .....|. ..+....+++
T Consensus 261 SgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-~s~~~wk--~~g~VEkv~w 337 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-NSGKEWK--FDGEVEKVAW 337 (463)
T ss_pred ecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-ccCceEE--eccceEEEEe
Confidence 34556778888888888776655 345567899999887788888888999998876310 0011221 1234556666
Q ss_pred CCCC
Q 046107 123 APDG 126 (224)
Q Consensus 123 d~dG 126 (224)
++..
T Consensus 338 ~~~s 341 (463)
T KOG0270|consen 338 DPHS 341 (463)
T ss_pred cCCC
Confidence 6654
No 354
>PRK13614 lipoprotein LpqB; Provisional
Probab=36.49 E-value=3.5e+02 Score=25.09 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCeEEEEecCc----cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107 48 HGQLLRYDPSSKQVSIVLEGL----YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA 123 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~~~~----~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 123 (224)
.|.|++++.. ..+.+.... ..+..+++++|++.+-+.+.....++.....+ ..+.+.+. ....--.+|
T Consensus 320 ~G~l~~~~~~--~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~----~~~~~~~g--~~Lt~PS~d 391 (573)
T PRK13614 320 DGELVRYENG--QISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRTTLYTVSPGQ----PARALTSG--STLTRPSFS 391 (573)
T ss_pred CCeEEEecCC--CcccCCCccCcCcccccceeecCCCceEEEecCCCcEEEEecCCC----cceeeecC--CCccCCccc
Confidence 5677777643 333332111 23456799999986544433333565544422 22333322 123344677
Q ss_pred CCCCEEEEEecC
Q 046107 124 PDGSFWISLIKM 135 (224)
Q Consensus 124 ~dG~l~va~~~~ 135 (224)
.+|.+|.+.-+.
T Consensus 392 ~~g~vWtv~~g~ 403 (573)
T PRK13614 392 PQDWVWTAGPGG 403 (573)
T ss_pred CCCCEEEeeCCC
Confidence 888888877544
No 355
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=36.40 E-value=2.2e+02 Score=24.48 Aligned_cols=83 Identities=14% Similarity=-0.008 Sum_probs=52.0
Q ss_pred CCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC---CCCceEE
Q 046107 47 PHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG---GPDNINL 122 (224)
Q Consensus 47 ~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~---~p~~i~~ 122 (224)
..|.|..+|+.+++... +.......|-|.+.|+.-.|.++.+..+.|..++++.. ..-.++.+..+ ..-.+.+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~---~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---VCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC---eEEEEecccccccCcEEEEEE
Confidence 45667778876554432 23345567889999988779999999999999998642 12122223322 3345566
Q ss_pred CCCCCEEEEE
Q 046107 123 APDGSFWISL 132 (224)
Q Consensus 123 d~dG~l~va~ 132 (224)
+.+|...++.
T Consensus 190 ~~~gd~i~Sc 199 (385)
T KOG1034|consen 190 SLDGDRIASC 199 (385)
T ss_pred cCCCCeeecc
Confidence 7777744443
No 356
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=35.99 E-value=2.7e+02 Score=23.48 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEEECCCCcEEEEEeCCCCC---c---ccc--eeEEEEECCEEEEEeC
Q 046107 172 AKVVKVSANGSIIREFNDPNAK---N---ISF--VTSALEFQGNLYLASI 213 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~~~~~~g~---~---~~~--~t~~~~~~g~lyv~~~ 213 (224)
..+..+|.+|+.+..+...... . ... -..+...++.+|++..
T Consensus 115 ~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
T PF13970_consen 115 PKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQP 164 (333)
T ss_dssp TEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE--
T ss_pred ceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeee
Confidence 4789999999998887543211 0 110 1233446777788765
No 357
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.66 E-value=2.6e+02 Score=23.05 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=41.3
Q ss_pred eEEEEeCCCC-eEEEEecCccccc-eeEEec--CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107 50 QLLRYDPSSK-QVSIVLEGLYFAN-GVALSK--HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125 (224)
Q Consensus 50 ~l~~~~~~~g-~~~~~~~~~~~pn-gia~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d 125 (224)
+|+....++. +...-..+..+|- -+++.. -|. |..+.+..++|..+.-.++.-...-.+. ......+.+++.|.
T Consensus 36 kIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~~-~h~~SVNsV~waph 113 (299)
T KOG1332|consen 36 KIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEHA-AHSASVNSVAWAPH 113 (299)
T ss_pred EEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhhh-hhcccceeeccccc
Confidence 4555555422 2222245666663 566654 565 7777788899888877643211111221 12345677777776
Q ss_pred C
Q 046107 126 G 126 (224)
Q Consensus 126 G 126 (224)
+
T Consensus 114 e 114 (299)
T KOG1332|consen 114 E 114 (299)
T ss_pred c
Confidence 4
No 358
>PTZ00486 apyrase Superfamily; Provisional
Probab=33.85 E-value=2.5e+02 Score=24.19 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=24.6
Q ss_pred EEEEEECCCCc-EEE--EEeCCCCCcccce-e-EEEEECCEEEEEeCC
Q 046107 172 AKVVKVSANGS-IIR--EFNDPNAKNISFV-T-SALEFQGNLYLASIN 214 (224)
Q Consensus 172 ~~v~~~~~~G~-~~~--~~~~~~g~~~~~~-t-~~~~~~g~lyv~~~~ 214 (224)
|.|++++-+++ ... .+.+.+|..-.+. . =+...++.|||++.+
T Consensus 135 GiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~G 182 (352)
T PTZ00486 135 GIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIG 182 (352)
T ss_pred eEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEeccc
Confidence 88999985553 333 2344444211111 1 134578999999987
No 359
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=33.78 E-value=3.2e+02 Score=23.76 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=57.9
Q ss_pred eeEEecCCCEEEEEeCCCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHH
Q 046107 73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQ 151 (224)
Q Consensus 73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~ 151 (224)
++.++. + ..|+.+..+.|.+++++.+..-+ ..++.... ...+-+.+ +..+.|+..+.+
T Consensus 282 hlrf~n--g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr-AaVNvVdf--d~kyIVsASgDR--------------- 340 (499)
T KOG0281|consen 282 HLRFSN--G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-AAVNVVDF--DDKYIVSASGDR--------------- 340 (499)
T ss_pred EEEEeC--C-EEEEecCCceeEEEeccCchHHHHHHHHhhhh-hheeeecc--ccceEEEecCCc---------------
Confidence 566653 2 67888888889999886421111 12222111 12333334 445666666653
Q ss_pred HHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107 152 LLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~ 223 (224)
.+-..+. .++.++.++.... ++.+ +-..|++.|+....+.|...+.
T Consensus 341 ---------------------TikvW~~st~efvRtl~gHkR----GIAC-lQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 341 ---------------------TIKVWSTSTCEFVRTLNGHKR----GIAC-LQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ---------------------eEEEEeccceeeehhhhcccc----ccee-hhccCeEEEecCCCceEEEEec
Confidence 2333343 4677777754321 2322 3467888888888888877654
No 360
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=32.74 E-value=3.3e+02 Score=23.53 Aligned_cols=140 Identities=18% Similarity=0.122 Sum_probs=75.3
Q ss_pred CceEEEEeCCCCeEE-EEecCccccceeEEecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-
Q 046107 48 HGQLLRYDPSSKQVS-IVLEGLYFANGVALSKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP- 124 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~- 124 (224)
+|.+-.||+.+++.- .+.....-.||++|..+ +-....+.+..+.|..||+.... ...+.-.+..++.| -+.+|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~-e~a~~~~~~~~~~~-f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA-ESARISWTQQSGTP-FICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch-hhhheeccCCCCCc-ceEeecc
Confidence 566666776654332 22222344578888762 22344444567899999986311 11111111222223 344444
Q ss_pred -CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeCCCCCcccceeEE
Q 046107 125 -DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAKNISFVTSA 201 (224)
Q Consensus 125 -dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~~~~~~t~~ 201 (224)
++++..+..... ... ..|+.+|.. -++++.+... ..-.+|.+
T Consensus 127 ck~~ii~~GtE~~------------------------------~s~--A~v~lwDvR~~qq~l~~~~eS---H~DDVT~l 171 (376)
T KOG1188|consen 127 CKKNIIACGTELT------------------------------RSD--ASVVLWDVRSEQQLLRQLNES---HNDDVTQL 171 (376)
T ss_pred CcCCeEEeccccc------------------------------cCc--eEEEEEEeccccchhhhhhhh---ccCcceeE
Confidence 677877764320 011 566666643 3435555321 12347777
Q ss_pred EEE--CCEEEEEeCCCCeEEEeeCC
Q 046107 202 LEF--QGNLYLASINSNFIGKLPLK 224 (224)
Q Consensus 202 ~~~--~g~lyv~~~~~~~i~~~~~~ 224 (224)
.++ +-++.++......|-+|++.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecC
Confidence 755 67788888888888888763
No 361
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=32.21 E-value=3.6e+02 Score=23.88 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=24.5
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
...|++|++.-....++....+.|..++++.
T Consensus 179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred cccccccccccceeEeeccCCCcEEEEeccc
Confidence 3678999987666677778888999999874
No 362
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.58 E-value=1.3e+02 Score=29.71 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCceEEEE----eCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107 47 PHGQLLRY----DPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKH 96 (224)
Q Consensus 47 ~~g~l~~~----~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~ 96 (224)
..|.|+.+ +++..+++.+..--.+...++||||+..|.++.. .+.|...
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-~~~l~~m 147 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-EGNLLLM 147 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-CCEEEEE
Confidence 46777777 6666677777666667778899999986666553 4555443
No 363
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=31.34 E-value=2.1e+02 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=22.2
Q ss_pred EEEEEECCCCcEEEE--EeCCCCCccccee--EEEEECCEEEEEeCCCC
Q 046107 172 AKVVKVSANGSIIRE--FNDPNAKNISFVT--SALEFQGNLYLASINSN 216 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~--~~~~~g~~~~~~t--~~~~~~g~lyv~~~~~~ 216 (224)
|.|+++..+ +.+.. +.+.+|..-.+.- =+...++.|||++.+-.
T Consensus 74 GiVyeI~~~-~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~Gke 121 (291)
T PF06079_consen 74 GIVYEIKGD-KAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSIGKE 121 (291)
T ss_dssp -EEEEEETT-EEEEEEE-BSTTTTESSB----EEEEETTEEEEE--SS-
T ss_pred ceEEEEeCC-ceeceEEEeCCCCCccccccceeeEEeCCeeeeccCCCc
Confidence 788998765 54443 3444443111111 14567999999997743
No 364
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=30.98 E-value=3.4e+02 Score=23.19 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=46.9
Q ss_pred ceEEEEeCC-CCeEEEEecCccccceeEE-ec-CCCEEEEE-eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107 49 GQLLRYDPS-SKQVSIVLEGLYFANGVAL-SK-HGDFVVVC-ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP 124 (224)
Q Consensus 49 g~l~~~~~~-~g~~~~~~~~~~~pngia~-~~-dg~~Lyv~-~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 124 (224)
.+++.|... .-+.-...+....|+|++. .| .++.+.+. ....++|...++.-...... .++.--......+++..
T Consensus 113 ~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p-~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 113 NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP-SIINAHDSDIACVALNL 191 (346)
T ss_pred CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc-eEEEcccCceeEEEEcC
Confidence 445555532 1122223455666888764 33 22333333 34567888888763222211 22211123457889999
Q ss_pred CCCEEEEEecC
Q 046107 125 DGSFWISLIKM 135 (224)
Q Consensus 125 dG~l~va~~~~ 135 (224)
+|.+..+....
T Consensus 192 ~Gt~vATaStk 202 (346)
T KOG2111|consen 192 QGTLVATASTK 202 (346)
T ss_pred CccEEEEeccC
Confidence 99999988777
No 365
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=30.17 E-value=3.5e+02 Score=23.16 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=22.5
Q ss_pred EEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeC
Q 046107 172 AKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASI 213 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~ 213 (224)
..+.++|+..+.-..+...........+.++..+++||+-.-
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence 468999987544333332111111223333347899999754
No 366
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.14 E-value=1.9e+02 Score=25.08 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=63.9
Q ss_pred eeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEE
Q 046107 5 HLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFV 83 (224)
Q Consensus 5 ~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~L 83 (224)
+.+..--..|.|.+.+|+..|++-.. .-++-|-.++. ++..--+|.+-.. ++. ....+.-.|+|..-.+
T Consensus 159 ~aNaHtyhiNSIS~NsD~Et~lSADd--LRINLWnlei~----d~sFnIVDIKP~n----mEeLteVITsaEFhp~~cn~ 228 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDKETFLSADD--LRINLWNLEII----DQSFNIVDIKPAN----MEELTEVITSAEFHPHHCNV 228 (433)
T ss_pred ccccceeEeeeeeecCccceEeeccc--eeeeecccccc----CCceeEEEccccC----HHHHHHHHhhhccCHhHccE
Confidence 33444455688888888888877433 22232322221 1111112211000 111 1223455678866558
Q ss_pred EEEeCCCCeEEEEEccCCCcc-------------cceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107 84 VVCESWKFRCIKHWLKLGDKR-------------DREIFIENLPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 84 yv~~~~~~~I~~~~~~~~~~~-------------~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
|+=.+.+|.|...|+....+= ..+.|+...-....++.+...|++.++.-+-
T Consensus 229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl 293 (433)
T KOG1354|consen 229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL 293 (433)
T ss_pred EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc
Confidence 888888899999988632110 0111211122356789999999988876654
No 367
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=29.24 E-value=3.1e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=-0.142 Sum_probs=18.5
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHW 97 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~ 97 (224)
....-.+|+|+|. |..+-++...|-...
T Consensus 90 gsiyc~~ws~~ge-liatgsndk~ik~l~ 117 (350)
T KOG0641|consen 90 GSIYCTAWSPCGE-LIATGSNDKTIKVLP 117 (350)
T ss_pred ccEEEEEecCccC-eEEecCCCceEEEEe
Confidence 3345779999997 777766665544433
No 368
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=29.23 E-value=3.4e+02 Score=22.70 Aligned_cols=102 Identities=7% Similarity=0.003 Sum_probs=59.2
Q ss_pred ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCC
Q 046107 11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESW 89 (224)
Q Consensus 11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~ 89 (224)
+....|-...+|.|.|+-.- ....+||+-.. |+.--...+ -...+.+.++-+.+ ..++-+.
T Consensus 11 RplTqiKyN~eGDLlFscaK---------------D~~~~vw~s~n--GerlGty~GHtGavW~~Did~~s~-~liTGSA 72 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAK---------------DSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDWDSK-HLITGSA 72 (327)
T ss_pred cccceEEecCCCcEEEEecC---------------CCCceEEEecC--CceeeeecCCCceEEEEEecCCcc-eeeeccc
Confidence 33456777788888887532 23445665431 221111122 22335666676665 6677777
Q ss_pred CCeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecC
Q 046107 90 KFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 90 ~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~ 135 (224)
.+.+..++...++ +++.. .+.....+.++.+|++.++....
T Consensus 73 D~t~kLWDv~tGk-----~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 73 DQTAKLWDVETGK-----QLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred cceeEEEEcCCCc-----EEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 7878888875321 22211 22345788899999988877665
No 369
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=28.46 E-value=2.4e+02 Score=24.53 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=32.0
Q ss_pred EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCC
Q 046107 83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMN 136 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~ 136 (224)
+.|+.+....|..+++... .|+..+.++-.|||+-+ .|++.|+....+
T Consensus 332 yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGSSDn 380 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGSSDN 380 (499)
T ss_pred eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecCCCc
Confidence 6667677777777776531 13333557788999986 578888777664
No 370
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.35 E-value=5.5e+02 Score=24.79 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred ceeeeccccccccceE---EecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccc-eeEEe
Q 046107 2 IKIHLCHLIRFANDVI---EASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFAN-GVALS 77 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~---~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~ 77 (224)
++..+...+..++++- +.|||.+...- --+.++-.|-.++-+...-.-+.+-|- .+.++
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-----------------LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVS-----------------LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEE-----------------eccCeEEEEEecceeeeeeecccccceeEEecc
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107 78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP 157 (224)
Q Consensus 78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (224)
||++ |.|+.+....|-.+-++ +|+...-+-.-......+.+-|+-.++.+.+..
T Consensus 560 ~DSk-livTgSADKnVKiWGLd---FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD---------------------- 613 (888)
T KOG0306|consen 560 PDSK-LIVTGSADKNVKIWGLD---FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD---------------------- 613 (888)
T ss_pred CCcC-eEEeccCCCceEEeccc---cchhhhhhhcccCceeEEEEcccceeEEEecCc----------------------
Q ss_pred hhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107 158 ELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP 222 (224)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~ 222 (224)
+.|-..|.+ -+.+..+...-.. .-..++...|...|++.....|....
T Consensus 614 --------------~kvKqWDg~kFe~iq~L~~H~~e---v~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 614 --------------GKVKQWDGEKFEEIQKLDGHHSE---VWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred --------------ceEEeechhhhhhheeeccchhe---eeeeEEcCCCCeEEeccCCceeEeee
No 371
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=28.01 E-value=1.2e+02 Score=16.89 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=22.9
Q ss_pred cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe
Q 046107 20 SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL 65 (224)
Q Consensus 20 ~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~ 65 (224)
-++.||+.=-. . . .......++++|+.+++++.+.
T Consensus 10 ~~~~iyv~GG~-----~---~---~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 10 VGNKIYVIGGY-----D---G---NNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp ETTEEEEEEEB-----E---S---TSSBEEEEEEEETTTTEEEEEE
T ss_pred ECCEEEEEeee-----c---c---cCceeeeEEEEeCCCCEEEEcC
Confidence 36788887211 1 0 1234668999999988888654
No 372
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=27.81 E-value=3.9e+02 Score=22.95 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=20.4
Q ss_pred cccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 69 YFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
.+.|-..+++||.++ ++.+..+.|..++..
T Consensus 349 Syvn~a~ft~dG~~i-isaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHI-ISASSDGTVKVWHGK 378 (508)
T ss_pred ccccceEEcCCCCeE-EEecCCccEEEecCc
Confidence 446677899999855 444556777777664
No 373
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=26.89 E-value=1.7e+02 Score=24.95 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=26.6
Q ss_pred CCceEEEEeCCC-CeEEEEec------CccccceeEEecCC--CEEEEEeCCCCeEEEEEccC
Q 046107 47 PHGQLLRYDPSS-KQVSIVLE------GLYFANGVALSKHG--DFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 47 ~~g~l~~~~~~~-g~~~~~~~------~~~~pngia~~~dg--~~Lyv~~~~~~~I~~~~~~~ 100 (224)
..+.||.+|.++ |+...-.+ ++..|..+..+.|| +++|+.|. .+.|||+++.+
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~ 240 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSS 240 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--T
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCC
Confidence 346789999887 65332221 12222222223344 47899986 58999999875
No 374
>PTZ00486 apyrase Superfamily; Provisional
Probab=26.01 E-value=4.3e+02 Score=22.82 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred ceeEEec----CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC-----CCCCceEECCCCCEEEEEecC
Q 046107 72 NGVALSK----HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-----GGPDNINLAPDGSFWISLIKM 135 (224)
Q Consensus 72 ngia~~~----dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-----~~p~~i~~d~dG~l~va~~~~ 135 (224)
.|+.+|. +|+ ||..|-.++-|+.+..++.++-..-++.++.. .-...+++ .|..|||+..+.
T Consensus 113 RGmELSELv~Fngk-Lys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTV-Kd~~LyVGs~Gk 183 (352)
T PTZ00486 113 RGMELSELVSFNGK-LYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATV-YDDKLYVGSIGK 183 (352)
T ss_pred CCcchhhhheeCCE-EEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEE-ECCEEEEecccc
Confidence 4665554 565 99999888999998765432212222222211 12344445 567788877664
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.24 E-value=5.6e+02 Score=23.84 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccc--eeEEec-CCCEEEEEeC
Q 046107 12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFAN--GVALSK-HGDFVVVCES 88 (224)
Q Consensus 12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pn--gia~~~-dg~~Lyv~~~ 88 (224)
..|-++...||.+..+ +.-+-++..+|+-..+....+....-.| .+.|-| -++.+.++-.
T Consensus 52 CVN~LeWn~dG~lL~S-----------------GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 52 CVNCLEWNADGELLAS-----------------GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred eecceeecCCCCEEee-----------------cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Q ss_pred CCCeEEEEEcc-------CCCcccceEeeccCCCCCCceEECCCC--CEEEEEecC
Q 046107 89 WKFRCIKHWLK-------LGDKRDREIFIENLPGGPDNINLAPDG--SFWISLIKM 135 (224)
Q Consensus 89 ~~~~I~~~~~~-------~~~~~~~~~~~~~~~~~p~~i~~d~dG--~l~va~~~~ 135 (224)
....|..|+++ ++...+..-...--......|+..++| .+|.|...+
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
No 376
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=6.9e+02 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=24.1
Q ss_pred ccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 70 FANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
+-..-.|+|-++ |.|+.+....|.++|+.|
T Consensus 137 YVMcAqFhptED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 137 YVMCAQFHPTED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred EEEeeccCCccc-eEEEecccceEEEEeecc
Confidence 334556888766 999999999999999876
No 377
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=24.85 E-value=6e+02 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=21.6
Q ss_pred cceeEEecCCCEEEEEeCCC----CeEEEEEccC
Q 046107 71 ANGVALSKHGDFVVVCESWK----FRCIKHWLKL 100 (224)
Q Consensus 71 pngia~~~dg~~Lyv~~~~~----~~I~~~~~~~ 100 (224)
..+++|.+|++.||.+.... .+|++-.+.+
T Consensus 176 ~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 176 SGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGT 209 (682)
T ss_pred ccceEEecCCCeEEEEEEcCCCCcceEEEEecCC
Confidence 45789999999998877443 3677666654
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.66 E-value=5.7e+02 Score=25.80 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=44.6
Q ss_pred EEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107 83 VVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI 160 (224)
Q Consensus 83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 160 (224)
+.+..+.++.|.-++..|. ...+..+ ..+....+++..+|.+..+..++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~------------------------- 151 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD------------------------- 151 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc----cchhhcCCccCCcceeeEecCCCceeccccCC-------------------------
Confidence 3444456677777776542 2212222 22345889999999999988887
Q ss_pred HhhhhcCCCceEEEEEECCC-CcEEEEEeC
Q 046107 161 NQLMSTGKGAAAKVVKVSAN-GSIIREFND 189 (224)
Q Consensus 161 ~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~ 189 (224)
|.|...|.+ +++.+.+..
T Consensus 152 -----------G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 152 -----------GHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred -----------CcEEEEEccCCcceeeeee
Confidence 788899976 577777754
No 379
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.76 E-value=3.8e+02 Score=23.72 Aligned_cols=33 Identities=3% Similarity=-0.165 Sum_probs=25.3
Q ss_pred CccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107 67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLK 99 (224)
Q Consensus 67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~ 99 (224)
....++..+|+.|+.....+--.++.|+.||+.
T Consensus 234 a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 234 AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 447788999998776554555577899999986
No 380
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=22.41 E-value=3.1e+02 Score=26.34 Aligned_cols=79 Identities=19% Similarity=0.005 Sum_probs=0.0
Q ss_pred ceeeeccccc--cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEec
Q 046107 2 IKIHLCHLIR--FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSK 78 (224)
Q Consensus 2 ~~~~~~~~~~--~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~ 78 (224)
.|+|.+++-. .+--|..||.|...+|.-+ +-+|-.+|..+|+.-..+.+.... .|+.|.+
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----------------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCS-----------------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeec-----------------CCceEEEEeccchhhhhhcCcchheeeeeecc
Q ss_pred CCCEEEEEeCCCCeEEEEEc
Q 046107 79 HGDFVVVCESWKFRCIKHWL 98 (224)
Q Consensus 79 dg~~Lyv~~~~~~~I~~~~~ 98 (224)
|=+ =.++-+..++|+.|.+
T Consensus 694 DCk-HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 694 DCK-HLISVSGDGCIFVWKL 712 (1080)
T ss_pred cch-hheeecCCceEEEEEC
No 381
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=21.92 E-value=1.8e+02 Score=26.87 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=40.6
Q ss_pred ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCC
Q 046107 2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHG 80 (224)
Q Consensus 2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg 80 (224)
|+.++. .+.|.|...|.|++.+.-.- .+..|.|..+|.+-..+.... ......+-+.|+|-|
T Consensus 487 Vk~~dk---~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtG 549 (698)
T KOG2314|consen 487 VKELDK---KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTG 549 (698)
T ss_pred hhhhcc---cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCC
Confidence 444444 56688899999976665321 124677888887632333332 234556789999999
Q ss_pred CEE
Q 046107 81 DFV 83 (224)
Q Consensus 81 ~~L 83 (224)
+++
T Consensus 550 RYv 552 (698)
T KOG2314|consen 550 RYV 552 (698)
T ss_pred CEE
Confidence 733
No 382
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.54 E-value=1.6e+02 Score=18.56 Aligned_cols=18 Identities=11% Similarity=0.479 Sum_probs=13.9
Q ss_pred CceEEEEeCCCCeEEEEe
Q 046107 48 HGQLLRYDPSSKQVSIVL 65 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~~ 65 (224)
.=.||++|+++++++...
T Consensus 40 ~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 40 QIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEE
Confidence 346899999988887543
No 383
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.00 E-value=6.6e+02 Score=23.13 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=30.1
Q ss_pred CceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107 48 HGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL 100 (224)
Q Consensus 48 ~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~ 100 (224)
+.++..+++..+..... ...-.-+..++++|||+.|.++ +++|-.|++..
T Consensus 123 d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a---s~~ik~~~~~~ 173 (541)
T KOG4547|consen 123 DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA---SRQIKVLDIET 173 (541)
T ss_pred ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec---cceEEEEEccC
Confidence 34444555443332222 2344556799999999966655 36788888754
No 384
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=20.65 E-value=20 Score=17.75 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=4.2
Q ss_pred EEecCCC
Q 046107 75 ALSKHGD 81 (224)
Q Consensus 75 a~~~dg~ 81 (224)
.|||+|+
T Consensus 7 ~FSp~Gr 13 (23)
T PF10584_consen 7 TFSPDGR 13 (23)
T ss_dssp SBBTTSS
T ss_pred eECCCCe
Confidence 3566665
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.65 E-value=5.8e+02 Score=22.35 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=31.5
Q ss_pred cceeEEecCCCEE-EEEeCCCCeEEEEEccCCCcccceEeec---cCCCCCCceEECCCCCEEEE
Q 046107 71 ANGVALSKHGDFV-VVCESWKFRCIKHWLKLGDKRDREIFIE---NLPGGPDNINLAPDGSFWIS 131 (224)
Q Consensus 71 pngia~~~dg~~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~~~p~~i~~d~dG~l~va 131 (224)
-..|++||+|++| +++ .++.++.+..+= . +.+.+ .....|..|++-.++.+.+.
T Consensus 219 i~~iavSpng~~iAl~t--~~g~l~v~ssDf---~--~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFT--DSGNLWVVSSDF---S--EKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred eEEEEECCCCCEEEEEE--CCCCEEEEECcc---c--ceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 3588999999866 333 345666665431 1 12221 12347888888776655554
No 386
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=20.54 E-value=2e+02 Score=17.56 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=22.0
Q ss_pred eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107 120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI 160 (224)
Q Consensus 120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 160 (224)
..+|.+-.+|++.... +...+...+.+..++.+++..+
T Consensus 5 a~wD~EA~VWvA~s~d---vpGLvtEA~Tle~L~~kl~~~i 42 (54)
T PF08972_consen 5 AFWDEEAGVWVATSDD---VPGLVTEADTLEELIEKLRVMI 42 (54)
T ss_dssp EEEETTTTEEEEE-SS---STT---EESSHHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEecCC---CccceecCccHHHHHHHHHHHH
Confidence 4678888999999876 3344445555555555555443
No 387
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=20.33 E-value=2.3e+02 Score=19.00 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=15.0
Q ss_pred EEEEEECCCCcEEEEEeCCCCC
Q 046107 172 AKVVKVSANGSIIREFNDPNAK 193 (224)
Q Consensus 172 ~~v~~~~~~G~~~~~~~~~~g~ 193 (224)
+.|-.++.+|+.+..+.--.|.
T Consensus 51 G~lEvy~~~GkHLGe~Dp~TGe 72 (85)
T PF09000_consen 51 GELEVYNKRGKHLGEFDPKTGE 72 (85)
T ss_dssp TEEEEEETT-BEEEEE-TTTS-
T ss_pred CeEEEEcCCCcCcccccCCccc
Confidence 7888888999999998443454
Done!