Query 046110
Match_columns 130
No_of_seqs 108 out of 1035
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1643 Triosephosphate isomer 100.0 4.3E-39 9.2E-44 256.1 9.2 107 18-129 137-243 (247)
2 PRK14566 triosephosphate isome 100.0 1.3E-38 2.7E-43 259.5 8.4 107 18-129 146-254 (260)
3 PF00121 TIM: Triosephosphate 100.0 2.7E-38 5.8E-43 254.7 8.4 108 18-129 135-244 (244)
4 PRK14567 triosephosphate isome 100.0 2.7E-37 5.8E-42 250.9 8.3 107 18-129 136-244 (253)
5 PRK15492 triosephosphate isome 100.0 4.1E-37 8.8E-42 250.3 8.3 107 18-129 145-254 (260)
6 cd00311 TIM Triosephosphate is 100.0 5.5E-37 1.2E-41 247.0 8.3 108 18-130 135-242 (242)
7 PRK00042 tpiA triosephosphate 100.0 1.2E-36 2.7E-41 246.1 8.8 107 18-129 137-245 (250)
8 PLN02429 triosephosphate isome 100.0 1.6E-36 3.5E-41 252.7 8.9 108 18-129 198-305 (315)
9 PRK13962 bifunctional phosphog 100.0 1.7E-36 3.6E-41 271.2 8.5 108 18-129 532-641 (645)
10 PLN02561 triosephosphate isome 100.0 3.6E-36 7.9E-41 244.1 8.2 107 18-129 139-245 (253)
11 PTZ00333 triosephosphate isome 100.0 1.9E-35 4E-40 239.9 8.2 107 18-129 140-248 (255)
12 COG0149 TpiA Triosephosphate i 100.0 3E-35 6.5E-40 238.8 8.9 106 18-129 139-244 (251)
13 PRK14905 triosephosphate isome 100.0 3.1E-34 6.6E-39 242.0 8.3 107 18-129 146-255 (355)
14 PRK14565 triosephosphate isome 100.0 1.4E-32 3.1E-37 221.4 8.2 96 18-129 136-231 (237)
15 TIGR00419 tim triosephosphate 100.0 1.9E-30 4E-35 205.1 8.5 86 21-119 118-203 (205)
16 PRK04302 triosephosphate isome 99.5 2.5E-14 5.3E-19 112.7 7.6 79 38-129 134-215 (223)
17 PF03437 BtpA: BtpA family; I 95.6 0.019 4.1E-07 47.2 4.5 46 52-115 183-228 (254)
18 TIGR00259 thylakoid_BtpA membr 93.6 0.099 2.1E-06 43.1 4.1 47 51-114 181-227 (257)
19 cd00429 RPE Ribulose-5-phospha 92.6 0.5 1.1E-05 35.6 6.5 64 44-116 133-196 (211)
20 COG0434 SgcQ Predicted TIM-bar 92.5 0.19 4.1E-06 41.7 4.2 52 52-122 188-239 (263)
21 cd04724 Tryptophan_synthase_al 88.9 0.57 1.2E-05 37.5 3.9 45 58-116 172-217 (242)
22 PRK13111 trpA tryptophan synth 88.2 0.64 1.4E-05 38.0 3.7 56 48-117 173-231 (258)
23 TIGR01163 rpe ribulose-phospha 88.1 2.7 5.8E-05 31.8 6.9 65 44-117 132-196 (210)
24 PRK10550 tRNA-dihydrouridine s 87.9 0.55 1.2E-05 39.3 3.3 43 83-128 194-237 (312)
25 PRK05581 ribulose-phosphate 3- 86.7 3.1 6.8E-05 31.8 6.6 58 51-117 143-201 (220)
26 PF01729 QRPTase_C: Quinolinat 85.7 2.1 4.6E-05 32.9 5.2 47 56-114 109-155 (169)
27 TIGR03772 anch_rpt_subst ancho 83.5 6.8 0.00015 35.0 8.1 74 21-105 354-445 (479)
28 PRK09545 znuA high-affinity zi 83.4 5.9 0.00013 32.9 7.2 72 22-106 189-276 (311)
29 PRK13125 trpA tryptophan synth 83.2 2.2 4.8E-05 34.0 4.5 59 42-117 158-217 (244)
30 PLN02591 tryptophan synthase 82.5 2.9 6.2E-05 34.2 4.9 53 52-117 167-221 (250)
31 CHL00200 trpA tryptophan synth 81.8 2.9 6.2E-05 34.3 4.8 55 50-117 177-234 (263)
32 PRK04169 geranylgeranylglycery 80.6 3.7 8E-05 33.3 4.9 49 51-116 165-215 (232)
33 cd01137 PsaA Metal binding pro 79.7 14 0.0003 30.2 8.1 74 23-107 162-251 (287)
34 PRK10415 tRNA-dihydrouridine s 78.9 2.2 4.7E-05 35.6 3.2 42 83-127 194-236 (321)
35 cd04722 TIM_phosphate_binding 77.9 10 0.00022 27.1 6.2 29 83-114 170-199 (200)
36 cd04732 HisA HisA. Phosphorib 77.9 6.3 0.00014 30.4 5.3 55 45-116 166-221 (234)
37 PHA02594 nadV nicotinamide pho 75.5 3.7 7.9E-05 36.8 3.8 47 55-101 298-352 (470)
38 COG0042 tRNA-dihydrouridine sy 74.8 3.9 8.4E-05 34.4 3.6 41 84-127 199-240 (323)
39 PRK09198 putative nicotinate p 74.4 4.4 9.4E-05 36.2 4.0 69 53-121 291-370 (463)
40 PRK08883 ribulose-phosphate 3- 74.2 8.9 0.00019 30.5 5.4 65 40-116 133-197 (220)
41 PLN02334 ribulose-phosphate 3- 74.2 21 0.00045 28.0 7.5 30 84-116 175-204 (229)
42 PRK14024 phosphoribosyl isomer 74.0 10 0.00022 30.2 5.7 60 43-116 164-224 (241)
43 TIGR00262 trpA tryptophan synt 73.9 6.3 0.00014 32.0 4.6 52 52-116 176-229 (256)
44 cd02801 DUS_like_FMN Dihydrour 72.9 2.7 5.9E-05 32.3 2.1 43 83-128 183-226 (231)
45 cd01019 ZnuA Zinc binding prot 72.5 24 0.00053 28.7 7.7 58 38-106 179-252 (286)
46 cd04723 HisA_HisF Phosphoribos 71.7 8.7 0.00019 30.5 4.8 56 47-121 167-223 (233)
47 cd01569 PBEF_like pre-B-cell c 71.4 5 0.00011 35.3 3.6 65 54-118 289-364 (407)
48 TIGR00734 hisAF_rel hisA/hisF 71.4 8.3 0.00018 30.5 4.6 54 46-116 161-215 (221)
49 PRK00748 1-(5-phosphoribosyl)- 71.1 9.5 0.00021 29.5 4.8 32 83-116 190-222 (233)
50 cd04731 HisF The cyclase subun 70.9 8.8 0.00019 30.1 4.6 32 83-116 193-225 (243)
51 TIGR01769 GGGP geranylgeranylg 70.4 12 0.00025 29.9 5.2 29 83-114 176-205 (205)
52 PRK13585 1-(5-phosphoribosyl)- 70.1 9.9 0.00022 29.6 4.8 32 83-117 193-225 (241)
53 PF01207 Dus: Dihydrouridine s 69.9 2.5 5.4E-05 35.0 1.4 41 83-126 183-224 (309)
54 PF00977 His_biosynth: Histidi 69.9 8.8 0.00019 30.3 4.5 31 83-116 191-222 (229)
55 COG3142 CutC Uncharacterized p 69.7 7.5 0.00016 32.1 4.1 69 18-103 122-191 (241)
56 TIGR03572 WbuZ glycosyl amidat 69.5 10 0.00023 29.5 4.7 32 83-116 197-229 (232)
57 PRK01033 imidazole glycerol ph 68.1 12 0.00026 30.1 5.0 32 83-116 196-228 (258)
58 cd02812 PcrB_like PcrB_like pr 68.0 9 0.00019 30.9 4.2 31 83-116 175-206 (219)
59 cd02068 radical_SAM_B12_BD B12 68.0 18 0.0004 25.4 5.4 51 55-116 49-99 (127)
60 TIGR02129 hisA_euk phosphoribo 67.8 6.1 0.00013 32.6 3.2 29 83-114 76-104 (253)
61 cd01018 ZntC Metal binding pro 67.5 19 0.00042 28.8 6.1 68 23-103 157-238 (266)
62 PF01297 TroA: Periplasmic sol 67.0 33 0.00072 26.9 7.2 68 23-103 137-220 (256)
63 cd04726 KGPDC_HPS 3-Keto-L-gul 65.8 26 0.00056 26.3 6.1 31 83-116 158-188 (202)
64 smart00796 AHS1 Allophanate hy 64.2 21 0.00045 28.1 5.5 61 36-107 48-113 (201)
65 cd01017 AdcA Metal binding pro 63.9 56 0.0012 26.3 8.1 58 38-106 171-244 (282)
66 PF00697 PRAI: N-(5'phosphorib 63.4 2.5 5.4E-05 32.7 0.1 46 48-106 124-170 (197)
67 PF12327 FtsZ_C: FtsZ family, 63.0 20 0.00044 24.8 4.7 65 16-95 13-80 (95)
68 TIGR01768 GGGP-family geranylg 62.7 15 0.00032 29.7 4.5 40 83-127 179-220 (223)
69 COG4064 MtrG Tetrahydromethano 62.6 2.7 5.9E-05 28.7 0.2 36 55-90 11-56 (75)
70 cd01016 TroA Metal binding pro 62.6 45 0.00097 27.0 7.3 69 23-102 146-230 (276)
71 TIGR00343 pyridoxal 5'-phospha 62.0 12 0.00026 31.7 3.9 33 83-118 197-232 (287)
72 PRK08662 nicotinate phosphorib 61.0 15 0.00032 31.4 4.4 53 58-120 240-292 (343)
73 TIGR00737 nifR3_yhdG putative 60.1 9 0.00019 31.6 2.9 42 83-127 192-234 (319)
74 TIGR01919 hisA-trpF 1-(5-phosp 60.0 13 0.00027 30.0 3.6 34 83-116 193-227 (243)
75 PF03932 CutC: CutC family; I 59.9 11 0.00025 29.9 3.3 24 81-104 168-191 (201)
76 PRK11572 copper homeostasis pr 59.0 19 0.00042 29.6 4.6 40 53-101 149-188 (248)
77 PRK01026 tetrahydromethanopter 58.2 3.5 7.6E-05 28.5 0.1 31 61-91 27-57 (77)
78 PF04210 MtrG: Tetrahydrometha 58.0 3.6 7.7E-05 28.0 0.1 31 60-90 23-53 (70)
79 cd04730 NPD_like 2-Nitropropan 57.8 34 0.00074 26.3 5.7 32 83-117 156-188 (236)
80 COG2144 Selenophosphate synthe 57.5 16 0.00034 31.4 4.0 34 55-96 103-136 (324)
81 PRK11815 tRNA-dihydrouridine s 57.2 6.5 0.00014 33.0 1.6 41 83-128 205-246 (333)
82 COG2069 CdhD CO dehydrogenase/ 56.9 21 0.00047 31.0 4.7 62 49-122 172-238 (403)
83 COG0803 LraI ABC-type metal io 56.8 99 0.0021 25.4 8.5 76 23-110 178-269 (303)
84 PRK04128 1-(5-phosphoribosyl)- 56.4 16 0.00035 29.1 3.7 41 83-128 73-114 (228)
85 PF04095 NAPRTase: Nicotinate 56.2 17 0.00036 29.3 3.8 65 53-117 115-182 (245)
86 TIGR01149 mtrG N5-methyltetrah 56.1 3.9 8.4E-05 27.8 0.1 32 61-92 24-55 (70)
87 PRK07428 nicotinate-nucleotide 55.2 29 0.00062 29.0 5.1 49 55-115 224-272 (288)
88 PF12682 Flavodoxin_4: Flavodo 54.7 7.5 0.00016 29.2 1.5 20 35-58 72-91 (156)
89 cd04731 HisF The cyclase subun 54.0 20 0.00044 28.0 3.9 42 83-128 71-113 (243)
90 cd04729 NanE N-acetylmannosami 53.8 20 0.00044 27.7 3.8 31 83-116 177-208 (219)
91 TIGR00007 phosphoribosylformim 53.6 29 0.00063 26.8 4.7 31 83-116 189-220 (230)
92 PRK08385 nicotinate-nucleotide 53.1 30 0.00066 28.8 4.9 49 55-113 210-258 (278)
93 PRK07896 nicotinate-nucleotide 52.5 29 0.00063 29.1 4.7 47 55-113 227-273 (289)
94 PRK14114 1-(5-phosphoribosyl)- 52.4 26 0.00057 28.2 4.4 34 83-116 188-225 (241)
95 PRK06543 nicotinate-nucleotide 52.1 25 0.00054 29.4 4.3 50 55-121 221-270 (281)
96 COG2049 DUR1 Allophanate hydro 51.9 52 0.0011 26.8 5.9 58 36-100 46-104 (223)
97 cd04740 DHOD_1B_like Dihydroor 51.7 24 0.00052 28.4 4.1 42 83-128 231-273 (296)
98 TIGR00742 yjbN tRNA dihydrouri 51.7 9.7 0.00021 32.0 1.8 41 83-128 195-236 (318)
99 cd01571 NAPRTase_B Nicotinate 51.5 26 0.00056 29.2 4.3 52 57-121 227-278 (302)
100 cd00405 PRAI Phosphoribosylant 50.9 14 0.0003 28.3 2.4 29 83-113 152-180 (203)
101 PRK01130 N-acetylmannosamine-6 49.6 25 0.00055 27.1 3.7 32 83-117 173-205 (221)
102 PF01884 PcrB: PcrB family; I 49.5 26 0.00056 28.6 3.9 31 82-115 181-212 (230)
103 PF02682 AHS1: Allophanate hyd 48.6 54 0.0012 25.8 5.5 62 36-108 48-113 (202)
104 PRK06096 molybdenum transport 48.4 37 0.00081 28.4 4.8 48 54-113 216-263 (284)
105 TIGR01334 modD putative molybd 48.0 35 0.00077 28.4 4.5 47 55-113 216-262 (277)
106 cd02911 arch_FMN Archeal FMN-b 47.5 18 0.00039 28.9 2.7 40 83-128 191-231 (233)
107 PRK07455 keto-hydroxyglutarate 47.4 71 0.0015 24.5 5.9 59 43-113 103-179 (187)
108 PRK06978 nicotinate-nucleotide 47.3 33 0.00071 29.0 4.3 50 55-121 233-282 (294)
109 cd04734 OYE_like_3_FMN Old yel 46.9 21 0.00046 30.0 3.1 41 83-126 285-326 (343)
110 KOG3798 Predicted Zn-dependent 46.8 15 0.00033 31.3 2.2 29 41-70 263-291 (343)
111 TIGR02159 PA_CoA_Oxy4 phenylac 46.4 23 0.00051 26.7 3.0 33 16-48 37-70 (146)
112 PRK09016 quinolinate phosphori 46.4 34 0.00073 28.9 4.2 50 55-121 236-285 (296)
113 TIGR00097 HMP-P_kinase phospho 46.1 53 0.0011 25.8 5.1 17 18-34 50-66 (254)
114 cd04728 ThiG Thiazole synthase 46.0 45 0.00098 27.6 4.8 56 46-118 149-208 (248)
115 cd01572 QPRTase Quinolinate ph 45.9 46 0.00099 27.3 4.9 42 57-113 212-253 (268)
116 PRK13587 1-(5-phosphoribosyl)- 45.5 40 0.00086 26.9 4.4 59 44-121 167-226 (234)
117 TIGR00370 conserved hypothetic 45.3 31 0.00067 27.3 3.6 60 36-107 41-103 (202)
118 TIGR02026 BchE magnesium-proto 45.0 51 0.0011 29.0 5.3 55 52-116 70-124 (497)
119 cd04733 OYE_like_2_FMN Old yel 44.7 26 0.00057 29.1 3.3 41 83-126 292-333 (338)
120 cd05400 NT_2-5OAS_ClassI-CCAas 44.7 34 0.00075 24.3 3.6 56 58-117 2-57 (143)
121 PRK05848 nicotinate-nucleotide 44.5 46 0.001 27.6 4.7 48 55-114 210-257 (273)
122 PRK04128 1-(5-phosphoribosyl)- 44.3 25 0.00054 28.0 3.0 31 83-116 182-213 (228)
123 COG1027 AspA Aspartate ammonia 44.1 22 0.00048 31.8 2.9 25 48-72 231-255 (471)
124 cd01568 QPRTase_NadC Quinolina 43.5 36 0.00079 27.8 3.9 45 56-113 210-254 (269)
125 PRK06559 nicotinate-nucleotide 43.4 36 0.00078 28.7 3.9 44 55-113 225-268 (290)
126 TIGR00735 hisF imidazoleglycer 42.8 29 0.00063 27.6 3.2 41 83-127 74-115 (254)
127 PRK12616 pyridoxal kinase; Rev 42.1 39 0.00085 27.0 3.9 41 19-70 58-98 (270)
128 cd00516 PRTase_typeII Phosphor 41.8 71 0.0015 25.6 5.3 59 55-120 213-271 (281)
129 cd02803 OYE_like_FMN_family Ol 41.0 29 0.00062 28.3 3.0 40 83-125 281-321 (327)
130 PLN02446 (5-phosphoribosyl)-5- 40.7 25 0.00055 29.1 2.6 40 84-128 84-128 (262)
131 PRK07259 dihydroorotate dehydr 40.3 25 0.00055 28.5 2.5 42 83-128 234-276 (301)
132 PRK08446 coproporphyrinogen II 40.2 1.3E+02 0.0028 25.1 6.8 88 16-118 29-119 (350)
133 PRK06106 nicotinate-nucleotide 40.0 43 0.00094 28.0 3.9 44 55-113 222-265 (281)
134 PRK10586 putative oxidoreducta 39.9 71 0.0015 27.1 5.2 38 86-124 65-103 (362)
135 PTZ00493 phosphomethylpyrimidi 39.8 72 0.0016 27.1 5.2 16 19-34 57-72 (321)
136 PRK13586 1-(5-phosphoribosyl)- 39.7 50 0.0011 26.4 4.1 29 85-116 191-220 (232)
137 cd01808 hPLIC_N Ubiquitin-like 39.3 22 0.00047 22.7 1.6 31 65-96 22-52 (71)
138 PRK04180 pyridoxal biosynthesi 38.8 56 0.0012 27.7 4.4 32 83-117 203-237 (293)
139 cd00331 IGPS Indole-3-glycerol 38.5 29 0.00063 26.7 2.5 31 83-116 172-203 (217)
140 COG4843 Uncharacterized protei 37.9 26 0.00057 27.2 2.1 12 37-48 151-162 (179)
141 cd01796 DDI1_N DNA damage indu 37.4 47 0.001 21.4 3.0 34 64-98 21-54 (71)
142 PRK05742 nicotinate-nucleotide 37.1 60 0.0013 26.9 4.3 49 55-120 217-265 (277)
143 PF06200 tify: tify domain; I 37.1 13 0.00028 22.0 0.3 23 81-103 5-33 (36)
144 cd01573 modD_like ModD; Quinol 36.4 64 0.0014 26.5 4.3 46 56-113 212-257 (272)
145 TIGR00683 nanA N-acetylneurami 36.4 96 0.0021 25.3 5.4 57 50-114 42-103 (290)
146 cd01020 TroA_b Metal binding p 36.2 2E+02 0.0043 22.9 7.1 65 23-100 140-224 (264)
147 PF11918 DUF3436: Domain of un 35.4 20 0.00044 23.3 1.0 13 37-49 14-26 (55)
148 TIGR00735 hisF imidazoleglycer 35.4 71 0.0015 25.4 4.4 32 83-116 199-231 (254)
149 PRK00043 thiE thiamine-phospha 35.4 79 0.0017 23.7 4.4 30 84-116 161-190 (212)
150 TIGR03128 RuMP_HxlA 3-hexulose 35.4 1.2E+02 0.0027 22.8 5.5 30 84-116 159-188 (206)
151 PF02044 Bombesin: Bombesin-li 34.5 6.8 0.00015 18.8 -1.0 7 46-52 2-8 (14)
152 PRK07116 flavodoxin; Provision 34.0 1.1E+02 0.0023 22.5 4.8 15 34-49 74-88 (160)
153 COG0159 TrpA Tryptophan syntha 33.7 77 0.0017 26.4 4.4 52 50-115 180-234 (265)
154 PRK02083 imidazole glycerol ph 33.6 53 0.0011 26.0 3.3 42 83-128 74-116 (253)
155 PRK06934 flavodoxin; Provision 33.5 21 0.00046 28.8 1.0 17 32-49 125-141 (221)
156 cd00564 TMP_TenI Thiamine mono 33.1 1.5E+02 0.0033 21.4 5.5 31 83-116 150-180 (196)
157 cd01791 Ubl5 UBL5 ubiquitin-li 33.1 40 0.00088 22.2 2.2 31 65-96 24-54 (73)
158 PRK01060 endonuclease IV; Prov 33.0 1.3E+02 0.0027 23.7 5.4 45 21-68 124-168 (281)
159 PRK02083 imidazole glycerol ph 32.9 88 0.0019 24.7 4.5 32 83-116 197-229 (253)
160 PF03876 SHS2_Rpb7-N: SHS2 dom 32.6 97 0.0021 19.5 3.9 49 7-55 1-52 (70)
161 COG0324 MiaA tRNA delta(2)-iso 32.5 32 0.00069 29.2 2.0 76 16-93 12-103 (308)
162 cd02067 B12-binding B12 bindin 32.4 1.7E+02 0.0036 20.1 5.5 47 55-112 61-107 (119)
163 TIGR00693 thiE thiamine-phosph 32.2 85 0.0018 23.4 4.1 30 84-116 153-182 (196)
164 TIGR00539 hemN_rel putative ox 32.2 2.6E+02 0.0056 23.3 7.4 88 18-118 31-121 (360)
165 cd02933 OYE_like_FMN Old yello 32.2 55 0.0012 27.5 3.4 41 83-126 285-325 (338)
166 PF00009 GTP_EFTU: Elongation 32.2 1.2E+02 0.0025 22.5 4.8 45 58-102 136-180 (188)
167 PRK09243 nicotinate phosphorib 32.0 81 0.0017 28.1 4.5 58 53-115 260-317 (464)
168 PRK12412 pyridoxal kinase; Rev 31.8 78 0.0017 25.2 4.0 48 9-70 49-96 (268)
169 cd01815 BMSC_UbP_N Ubiquitin-l 31.1 45 0.00097 22.7 2.2 45 55-102 17-61 (75)
170 cd02932 OYE_YqiM_FMN Old yello 30.7 45 0.00098 27.6 2.6 38 83-123 290-328 (336)
171 cd01790 Herp_N Homocysteine-re 30.7 44 0.00095 22.8 2.1 37 64-101 25-62 (79)
172 cd01800 SF3a120_C Ubiquitin-li 30.4 14 0.00029 24.2 -0.5 36 66-103 21-56 (76)
173 PLN02716 nicotinate-nucleotide 30.3 46 0.001 28.3 2.6 42 57-113 248-289 (308)
174 PRK00208 thiG thiazole synthas 30.3 86 0.0019 26.0 4.1 57 46-118 149-208 (250)
175 PLN02446 (5-phosphoribosyl)-5- 30.2 1.1E+02 0.0024 25.4 4.8 34 82-116 206-240 (262)
176 KOG0357 Chaperonin complex com 30.2 42 0.00091 29.5 2.4 20 65-93 265-284 (400)
177 cd02192 PurM-like3 AIR synthas 29.5 1.1E+02 0.0025 24.8 4.7 33 56-96 96-128 (283)
178 PF09370 TIM-br_sig_trns: TIM- 29.5 1.1E+02 0.0024 25.7 4.6 68 39-112 172-244 (268)
179 PF00290 Trp_syntA: Tryptophan 29.2 1E+02 0.0022 25.3 4.4 53 50-116 173-228 (259)
180 COG0351 ThiD Hydroxymethylpyri 29.2 86 0.0019 26.1 4.0 42 19-71 56-97 (263)
181 COG1411 Uncharacterized protei 29.1 1.2E+02 0.0027 24.8 4.7 54 46-115 158-211 (229)
182 cd01814 NTGP5 Ubiquitin-like N 29.0 55 0.0012 24.1 2.5 39 64-103 27-71 (113)
183 PRK11840 bifunctional sulfur c 28.9 1.8E+02 0.0039 25.1 5.9 58 42-118 220-280 (326)
184 TIGR01037 pyrD_sub1_fam dihydr 28.1 1.2E+02 0.0025 24.5 4.6 42 83-128 234-276 (300)
185 PF02873 MurB_C: UDP-N-acetyle 28.1 83 0.0018 22.4 3.3 42 37-87 63-104 (105)
186 PF09821 AAA_assoc_C: C-termin 27.7 75 0.0016 23.1 3.0 19 2-20 26-44 (120)
187 PRK10878 hypothetical protein; 27.5 62 0.0013 21.8 2.4 26 47-73 40-65 (72)
188 PRK05660 HemN family oxidoredu 27.2 2.5E+02 0.0055 23.7 6.6 88 17-118 37-128 (378)
189 smart00309 PAH Pancreatic horm 26.8 1.2E+02 0.0025 18.0 3.2 23 52-74 8-30 (36)
190 PF00175 NAD_binding_1: Oxidor 26.8 37 0.0008 22.5 1.2 37 49-96 3-39 (109)
191 TIGR00078 nadC nicotinate-nucl 26.7 1.1E+02 0.0024 25.0 4.2 43 56-113 207-249 (265)
192 cd02930 DCR_FMN 2,4-dienoyl-Co 26.6 37 0.0008 28.5 1.4 40 83-125 276-316 (353)
193 cd02071 MM_CoA_mut_B12_BD meth 26.4 1.3E+02 0.0028 21.1 4.1 31 83-117 81-111 (122)
194 PF11144 DUF2920: Protein of u 26.3 98 0.0021 27.4 4.0 32 82-113 182-214 (403)
195 PRK13347 coproporphyrinogen II 26.1 3.4E+02 0.0073 23.6 7.3 88 19-118 83-173 (453)
196 PF05577 Peptidase_S28: Serine 25.7 91 0.002 26.4 3.6 77 38-120 59-147 (434)
197 COG3836 HpcH 2,4-dihydroxyhept 25.7 31 0.00066 28.8 0.7 27 94-122 157-183 (255)
198 PF04459 DUF512: Protein of un 25.6 84 0.0018 25.0 3.2 69 2-70 5-92 (204)
199 cd02929 TMADH_HD_FMN Trimethyl 25.4 82 0.0018 26.8 3.3 41 83-126 289-330 (370)
200 cd01567 NAPRTase_PncB Nicotina 25.4 76 0.0016 26.5 3.1 52 53-105 266-317 (343)
201 TIGR00538 hemN oxygen-independ 25.2 4.1E+02 0.009 23.0 7.7 89 18-118 81-172 (455)
202 PF01661 Macro: Macro domain; 24.9 1.5E+02 0.0032 19.8 4.0 44 18-64 73-117 (118)
203 COG5405 HslV ATP-dependent pro 24.7 36 0.00078 26.9 0.9 14 42-55 117-131 (178)
204 cd01805 RAD23_N Ubiquitin-like 24.6 1E+02 0.0022 19.5 2.9 32 65-96 23-55 (77)
205 TIGR01513 NAPRTase_put putativ 24.3 1.2E+02 0.0025 27.0 4.1 54 53-111 251-304 (443)
206 TIGR00762 DegV EDD domain prot 24.3 3.2E+02 0.0068 22.0 6.4 61 1-72 185-248 (275)
207 cd01794 DC_UbP_C dendritic cel 24.3 57 0.0012 21.2 1.7 32 64-96 20-51 (70)
208 COG1908 FrhD Coenzyme F420-red 24.1 69 0.0015 24.2 2.3 32 83-117 32-63 (132)
209 PRK08898 coproporphyrinogen II 24.0 4.2E+02 0.009 22.6 7.3 88 17-118 52-143 (394)
210 TIGR03471 HpnJ hopanoid biosyn 23.9 1.7E+02 0.0036 25.4 5.0 55 52-116 75-129 (472)
211 PRK08072 nicotinate-nucleotide 23.6 1.1E+02 0.0025 25.3 3.7 44 55-113 216-259 (277)
212 cd02810 DHOD_DHPD_FMN Dihydroo 23.3 59 0.0013 26.0 1.9 43 83-129 243-287 (289)
213 PRK13803 bifunctional phosphor 23.0 1.1E+02 0.0024 28.0 3.8 42 50-107 142-183 (610)
214 cd01797 NIRF_N amino-terminal 23.0 51 0.0011 21.8 1.3 32 64-96 24-55 (78)
215 cd01798 parkin_N amino-termina 22.7 63 0.0014 20.4 1.7 36 64-101 20-55 (70)
216 PLN02945 nicotinamide-nucleoti 22.5 46 0.00099 26.5 1.2 20 82-101 21-40 (236)
217 PRK01222 N-(5'-phosphoribosyl) 21.5 83 0.0018 24.7 2.4 23 84-106 155-177 (210)
218 cd00126 PAH Pancreatic Hormone 21.4 1.7E+02 0.0038 17.3 3.2 23 52-74 8-30 (36)
219 PF03948 Ribosomal_L9_C: Ribos 21.1 40 0.00087 23.0 0.5 23 86-109 27-50 (87)
220 PRK08091 ribulose-phosphate 3- 21.0 3.3E+02 0.0072 22.0 5.8 63 40-114 145-207 (228)
221 cd04727 pdxS PdxS is a subunit 21.0 3E+02 0.0065 23.3 5.7 33 83-118 194-229 (283)
222 PRK07152 nadD putative nicotin 21.0 50 0.0011 27.6 1.1 31 86-116 4-38 (342)
223 cd01812 BAG1_N Ubiquitin-like 20.9 1.9E+02 0.004 17.8 3.6 31 65-96 22-52 (71)
224 PF08915 tRNA-Thr_ED: Archaea- 20.9 3.8E+02 0.0083 20.3 5.9 35 37-74 72-106 (138)
225 cd01570 NAPRTase_A Nicotinate 20.7 1.4E+02 0.003 25.2 3.7 56 53-113 252-307 (327)
226 cd03330 Macro_2 Macro domain, 20.3 2.2E+02 0.0048 20.1 4.3 40 20-62 85-125 (133)
227 PF10302 DUF2407: DUF2407 ubiq 20.2 1.1E+02 0.0024 21.4 2.6 36 60-98 25-60 (97)
No 1
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=256.12 Aligned_cols=107 Identities=44% Similarity=0.654 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++.+++.+||+++.+.+.+|++++||||||||||||++|||+|+|++|..||+|+.++.+..++..+||+||||||..||
T Consensus 137 ~t~dVv~~Ql~aiad~v~~w~niviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~ 216 (247)
T KOG1643|consen 137 KTLDVVFRQLKAIADKVKDWSNIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNC 216 (247)
T ss_pred chHHHHHHHHHHHHHhcCCccceEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
++|.+. +|+||+||||+|+++ .|++|+
T Consensus 217 ~el~~~--~diDGFLVGGaSLKp---eF~~Ii 243 (247)
T KOG1643|consen 217 KELAKK--PDIDGFLVGGASLKP---EFVDII 243 (247)
T ss_pred HHhccc--ccccceEEcCcccCh---HHHHhh
Confidence 999987 778999999999988 799987
No 2
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-38 Score=259.49 Aligned_cols=107 Identities=33% Similarity=0.513 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.+++.+||+..|+++. ++++++|||||+||||||++|+|+|++++|++||+++++. +...++++|||||||||++
T Consensus 146 ~t~~vv~~Ql~~~l~~~~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGGSV~~~ 224 (260)
T PRK14566 146 RTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGGSVTPS 224 (260)
T ss_pred CHHHHHHHHHHHHHhccchhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecCCCCHh
Confidence 578899999999998543 4789999999999999999999999999999999999988 7788889999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+++|+++ +|+||+|||+||+ |+++|..||
T Consensus 225 N~~~l~~~--~dIDG~LVGgASL--~~~~F~~Ii 254 (260)
T PRK14566 225 NAADLFAQ--PDVDGGLIGGASL--NSTEFLSLC 254 (260)
T ss_pred HHHHHhcC--CCCCeEEechHhc--CHHHHHHHH
Confidence 99999988 7789999988885 889999997
No 3
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=2.7e-38 Score=254.75 Aligned_cols=108 Identities=33% Similarity=0.464 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.++|.+||+.+|++++ ++++++|||||+||||||++||+++++++|++||++++++|+...++++|||||||||++
T Consensus 135 ~~~~~l~~Ql~~~l~~i~~~~~~~~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~ 214 (244)
T PF00121_consen 135 KTKEVLKRQLKSILKGIDKEELKNIIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPE 214 (244)
T ss_dssp CHHHHHHHHHHHHHTTSSGGGGTCEEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTT
T ss_pred cHHHHHHHHHHHHHhccccccccceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcc
Confidence 578899999999999997 478999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+.+|+++ .|+||+|||+||+ ++++|.+||
T Consensus 215 N~~~l~~~--~~iDG~LVG~asl--~~~~F~~Ii 244 (244)
T PF00121_consen 215 NAAELLSQ--PDIDGVLVGGASL--KAESFLEII 244 (244)
T ss_dssp THHHHHTS--TT-SEEEESGGGG--STHHHHHHH
T ss_pred cHHHHhcC--CCCCEEEEchhhh--cccchhhcC
Confidence 99999988 6789999988875 889999997
No 4
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.7e-37 Score=250.86 Aligned_cols=107 Identities=29% Similarity=0.407 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.+++.+||+.++++++ ++++++|||||+||||||++|||++++++|++||+++.+ ++...++++|||||||||++
T Consensus 136 ~~~~vv~~Ql~~~l~~i~~~~~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGGSV~~~ 214 (253)
T PRK14567 136 KLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGGSLKAE 214 (253)
T ss_pred CHHHHHHHHHHHHHccCCHHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcCcCCHH
Confidence 477899999999999886 478999999999999999999999999999999999987 67777889999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+++|+++ .|+||+|||+||+ |+++|..||
T Consensus 215 N~~~l~~~--~diDG~LVGgasL--~~~~F~~Ii 244 (253)
T PRK14567 215 NAKDILSL--PDVDGGLIGGASL--KAAEFNEII 244 (253)
T ss_pred HHHHHHcC--CCCCEEEeehhhh--cHHHHHHHH
Confidence 99999988 6789999988885 889999987
No 5
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.1e-37 Score=250.31 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCC-CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGT-GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVIN 94 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGt-G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~ 94 (130)
++.+++.+|++.+|+.++ .+++++|||||+||||| |++|++++++++|++||+++++.++.. ++++|||||||||+
T Consensus 145 ~~~~v~~~Ql~~~l~~~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGGSV~~ 223 (260)
T PRK15492 145 ISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGGSVNA 223 (260)
T ss_pred CHHHHHHHHHHHHHhcCCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcCccCH
Confidence 567899999999999886 47899999999999998 999999999999999999999998766 78899999999999
Q ss_pred ccHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 95 STLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 95 ~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
+|+++|+++ +|+||+|||++|+ |+++|.+||
T Consensus 224 ~N~~~l~~~--~diDG~LvG~aSl--~~~~F~~Ii 254 (260)
T PRK15492 224 ENANELFGQ--PHIDGLFIGRSAW--DADKFFAII 254 (260)
T ss_pred HHHHHHhcC--CCCCEEEeehhhc--CHHHHHHHH
Confidence 999999988 7889999988875 889999997
No 6
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=5.5e-37 Score=247.04 Aligned_cols=108 Identities=33% Similarity=0.445 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++.+++.+|++..++.++.+++++|||||+||||||++||+++++++|++||+++++.++. ++.++|||||||||++|+
T Consensus 135 ~~~~~~~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGGSV~~~N~ 213 (242)
T cd00311 135 KTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGGSVNPENA 213 (242)
T ss_pred CHHHHHHHHHHHHHhcchhhcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECCCCCHHHH
Confidence 5778999999999998867899999999999999999999999999999999999999987 888999999999999999
Q ss_pred HHHHcccCCCcceEEEeeeeccccccccccccC
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCICL 130 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~~ 130 (130)
++++++ .|+||+|||+||+ |+++|.+||.
T Consensus 214 ~~l~~~--~~vDG~LVG~Asl--~~~~f~~Ii~ 242 (242)
T cd00311 214 AELLAQ--PDIDGVLVGGASL--KAESFLDIIK 242 (242)
T ss_pred HHHhcC--CCCCEEEeehHhh--CHHHHHHHhC
Confidence 999988 6789999988875 8899999973
No 7
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.2e-36 Score=246.09 Aligned_cols=107 Identities=36% Similarity=0.492 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.++|.+||+.+|++++ .+++++|||||+||||||++||+++++++|++||++++++++ ..+.++|||||||||++
T Consensus 137 ~~~~v~~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGGSV~~~ 215 (250)
T PRK00042 137 KTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGGSVKPD 215 (250)
T ss_pred ChHHHHHHHHHHHHccCCHHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcCCCCHH
Confidence 678899999999999886 378999999999999999999999999999999999999988 77889999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+.+++.+ +|+||+|||+||+ ++++|..||
T Consensus 216 N~~~l~~~--~~vDG~LVG~Asl--~~~~f~~ii 245 (250)
T PRK00042 216 NAAELMAQ--PDIDGALVGGASL--KAEDFLAIV 245 (250)
T ss_pred HHHHHhcC--CCCCEEEEeeeee--chHHHHHHH
Confidence 99999987 7789999988875 889999987
No 8
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=1.6e-36 Score=252.73 Aligned_cols=108 Identities=41% Similarity=0.615 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++++++.+|++.+++.++++++++|||||+||||||++|+|++++++|++||++++++++.+.+.++|||||||||++|+
T Consensus 198 ~t~~vi~~Ql~~~l~~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~ 277 (315)
T PLN02429 198 KTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNS 277 (315)
T ss_pred CHHHHHHHHHHHHHccCCcccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHH
Confidence 57889999999999998888999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
.+|+.+ .|+||+|||+||+ ++++|.+||
T Consensus 278 ~el~~~--~diDG~LVGgASL--~~~~F~~Ii 305 (315)
T PLN02429 278 AELAKE--EDIDGFLVGGASL--KGPEFATIV 305 (315)
T ss_pred HHHhcC--CCCCEEEeeccee--cHHHHHHHH
Confidence 999987 6789999988885 889999997
No 9
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.7e-36 Score=271.22 Aligned_cols=108 Identities=34% Similarity=0.457 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.+++.+||+.++++++ ++++++|||||+||||||++|+|+|+|++|++||++++++|+...++++||||||||||+
T Consensus 532 ~t~~vv~~Ql~~~l~~v~~~~~~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~ 611 (645)
T PRK13962 532 ITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSE 611 (645)
T ss_pred CHHHHHHHHHHHHHccCCHhHcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHh
Confidence 677899999999999886 478999999999999999999999999999999999999999888999999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+.+|+++ +|+||+|||+||+ |+++|.+||
T Consensus 612 N~~~l~~~--~diDG~LVGgASL--~~~~F~~Ii 641 (645)
T PRK13962 612 NAAGLFNQ--PDIDGGLVGGASL--KAQEFAAIA 641 (645)
T ss_pred HHHHHhcC--CCCCeEEeehHhc--CHHHHHHHH
Confidence 99999988 7789999988885 889999997
No 10
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=3.6e-36 Score=244.11 Aligned_cols=107 Identities=48% Similarity=0.686 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++.+++.+|++.+++.++++++++|||||+||||||++||+++++++|++||+++.+.|+..+++++|||||||||++|+
T Consensus 139 ~~~~~v~~Ql~~~l~~v~~~~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~ 218 (253)
T PLN02561 139 STMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANC 218 (253)
T ss_pred CHHHHHHHHHHHHHhccccccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHH
Confidence 57889999999999988767899999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
.+|+.+ +|+||+|||+||+ |+ +|..||
T Consensus 219 ~~l~~~--~~iDG~LVG~ASL--~~-~F~~ii 245 (253)
T PLN02561 219 KELAAQ--PDVDGFLVGGASL--KP-EFIDII 245 (253)
T ss_pred HHHhcC--CCCCeEEEehHhh--HH-HHHHHH
Confidence 999987 6789999988875 66 599987
No 11
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.9e-35 Score=239.92 Aligned_cols=107 Identities=46% Similarity=0.674 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhccccC--CCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc
Q 046110 18 RGLIDLGSVVETLCGKISN--WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS 95 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~--~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~ 95 (130)
++.+++.+|++.+++.++. +++++|||||+||||||++|+|++++++|++||+.+.++++...+.++||||||||+++
T Consensus 140 ~~~~~v~~Ql~~~l~~v~~~~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~ 219 (255)
T PTZ00333 140 QTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEK 219 (255)
T ss_pred CHHHHHHHHHHHHHhcCCHHHcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHH
Confidence 6788999999999998863 68999999999999999999999999999999999999998888889999999999999
Q ss_pred cHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
|+.+|+.+ .|+||+|||+||+ ++ +|.+||
T Consensus 220 N~~~l~~~--~~vDG~LvG~asl--~~-~f~~Ii 248 (255)
T PTZ00333 220 NCKELIKQ--PDIDGFLVGGASL--KP-DFVDII 248 (255)
T ss_pred HHHHHhcC--CCCCEEEEehHhh--hh-hHHHHH
Confidence 99999987 7789999988876 64 799987
No 12
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-35 Score=238.76 Aligned_cols=106 Identities=36% Similarity=0.461 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++.+++.+|++..+..++..++++|||||+||||||+++|+++++++|++||+++.+++|.+ ..+|||||||||++|+
T Consensus 139 ~t~~v~~~Ql~~~l~~l~~~~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGGSV~~~N~ 216 (251)
T COG0149 139 KTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGGSVKPGNA 216 (251)
T ss_pred ChHHHHHHHHHHHHhhcCcccCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeCCcChhHH
Confidence 46789999999999999866899999999999999999999999999999999999999866 8899999999999999
Q ss_pred HHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
.+++.+ +|+||+|||+||+ ++++|..|+
T Consensus 217 ~e~~~~--~~idG~LVGgAsl--ka~~f~~ii 244 (251)
T COG0149 217 AELAAQ--PDIDGALVGGASL--KADDFLAIL 244 (251)
T ss_pred HHHhcC--CCCCeEEEcceee--cchhHHHHH
Confidence 999987 7789999988875 779999986
No 13
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=3.1e-34 Score=242.02 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHhcccc--CCCceEEEeeeeeecCC-CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCc
Q 046110 18 RGLIDLGSVVETLCGKIS--NWDNVVLAYEPVWVIGT-GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVIN 94 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~--~~~~vvIAYEPvWAIGt-G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~ 94 (130)
++.+++.+|++..+++++ ++++++|||||+||||| |++||+++++++|++||+++.+.++.. +.++|||||||||+
T Consensus 146 ~~~~v~~~Ql~~~l~~v~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGGSV~~ 224 (355)
T PRK14905 146 ISDEVLRTQLKIGLHGVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGGSVNL 224 (355)
T ss_pred CHHHHHHHHHHHHHccCCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeCcCCH
Confidence 478899999999999885 57899999999999998 899999999999999999999998766 77899999999999
Q ss_pred ccHHHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 95 STLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 95 ~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
+|+.+|+.+ .|+||+|||+||+ |+++|..||
T Consensus 225 ~N~~~l~~~--~~iDG~LVG~asl--~~~~f~~Ii 255 (355)
T PRK14905 225 ENANELIMK--PHIDGLFIGRSAW--DAQCFHALI 255 (355)
T ss_pred HHHHHHhcC--CCCCEEEechhhc--cHHHHHHHH
Confidence 999999987 7789999988875 889999987
No 14
>PRK14565 triosephosphate isomerase; Provisional
Probab=99.97 E-value=1.4e-32 Score=221.42 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTL 97 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~ 97 (130)
++++++.+|++..+++. ++++|||||+||||||++|+|++++++|++||++. .++|||||||||++|+
T Consensus 136 ~~~~~~~~Ql~~~l~~~---~~ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~---------~~~~IlYGGSV~~~N~ 203 (237)
T PRK14565 136 MTKDVLLEQCSNCLPKH---GEFIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYD---------SKSHIIYGGSVNQENI 203 (237)
T ss_pred ChHHHHHHHHHHHhcCC---CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhC---------CCceEEEcCccCHhhH
Confidence 56789999999988864 67999999999999999999999999999999862 3679999999999999
Q ss_pred HHHHcccCCCcceEEEeeeecccccccccccc
Q 046110 98 QLNIQYYYPNLFIELTLAFSIRYQGDVFSCIC 129 (130)
Q Consensus 98 ~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I~ 129 (130)
++|+++ .|+||+|||+||+ |+++|..||
T Consensus 204 ~~l~~~--~~iDG~LvG~asl--~~~~f~~ii 231 (237)
T PRK14565 204 RDLKSI--NQLSGVLVGSASL--DVDSFCKII 231 (237)
T ss_pred HHHhcC--CCCCEEEEechhh--cHHHHHHHH
Confidence 999986 6789999988875 889999987
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=99.96 E-value=1.9e-30 Score=205.11 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHH
Q 046110 21 IDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLN 100 (130)
Q Consensus 21 ~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l 100 (130)
+++.+|+.... +++++|||||+||||||++||+++++++|++|| ++...++++|||||||||++|+.++
T Consensus 118 ~~v~~q~~~~~-----~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGGSV~~~N~~~l 186 (205)
T TIGR00419 118 NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGAGISTGEDAEL 186 (205)
T ss_pred HHHHHHHHhhh-----hcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeCCCCHHHHHHH
Confidence 45666665332 578999999999999999999999999999999 3455678899999999999999999
Q ss_pred HcccCCCcceEEEeeeecc
Q 046110 101 IQYYYPNLFIELTLAFSIR 119 (130)
Q Consensus 101 ~~~~~~dvdG~Lig~~s~~ 119 (130)
+.+ +|+||+|||+||++
T Consensus 187 ~~~--~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 187 AAQ--LGAEGVLLASGSLK 203 (205)
T ss_pred hcC--CCCCEEEEeeeeec
Confidence 987 67899999999873
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.53 E-value=2.5e-14 Score=112.68 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=65.4
Q ss_pred CceEEEeeeeeecCCCCC---CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 38 DNVVLAYEPVWVIGTGKV---AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 38 ~~vvIAYEPvWAIGtG~~---as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
+..+|+|||+|+||||.. ++|++++++++.+|+. ..++||+|||+|+..|..+.+.. .+.||++||
T Consensus 134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~---------~~~~pvi~GggI~~~e~~~~~~~--~gadGvlVG 202 (223)
T PRK04302 134 GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV---------NPDVKVLCGAGISTGEDVKAALE--LGADGVLLA 202 (223)
T ss_pred CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc---------cCCCEEEEECCCCCHHHHHHHHc--CCCCEEEEe
Confidence 456899999999999876 8899999999999964 12579999999988888888765 566999997
Q ss_pred eeecccccccccccc
Q 046110 115 AFSIRYQGDVFSCIC 129 (130)
Q Consensus 115 ~~s~~~~~~~F~~I~ 129 (130)
.++. +.++|..|+
T Consensus 203 sa~l--~~~~~~~~~ 215 (223)
T PRK04302 203 SGVV--KAKDPEAAL 215 (223)
T ss_pred hHHh--CCcCHHHHH
Confidence 7765 668898775
No 17
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.59 E-value=0.019 Score=47.21 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEee
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~ 115 (130)
||.++++++++++-+.. .+|++=|+.||++|+.++++. . ||+.||-
T Consensus 183 TG~~~~~~~l~~vr~~~--------------~~PVlvGSGvt~~Ni~~~l~~--A--DG~IVGS 228 (254)
T PF03437_consen 183 TGEPPDPEKLKRVREAV--------------PVPVLVGSGVTPENIAEYLSY--A--DGAIVGS 228 (254)
T ss_pred cCCCCCHHHHHHHHhcC--------------CCCEEEecCCCHHHHHHHHHh--C--CEEEEee
Confidence 78999999887543322 279999999999999999975 3 8999953
No 18
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=93.58 E-value=0.099 Score=43.10 Aligned_cols=47 Identities=9% Similarity=-0.063 Sum_probs=36.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 51 GTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 51 GtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
|||.+++.+.++.+ |+. ...+|++=||-++++|+.++++. + ||+.||
T Consensus 181 ~TG~~~d~~~l~~v----r~~---------~~~~PvllggGvt~eNv~e~l~~--a--dGviVg 227 (257)
T TIGR00259 181 TTGTEVDLELLKLA----KET---------VKDTPVLAGSGVNLENVEELLSI--A--DGVIVA 227 (257)
T ss_pred CCCCCCCHHHHHHH----Hhc---------cCCCeEEEECCCCHHHHHHHHhh--C--CEEEEC
Confidence 58999999988743 321 11368999999999999999975 4 888883
No 19
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.64 E-value=0.5 Score=35.63 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=40.8
Q ss_pred eeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 44 YEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 44 YEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
|=|++.=+||...++ ...+..+.+|+...++ ..+.|+.-+|.++++|++++++. ..||+.+|.+
T Consensus 133 ~~~~~~g~tg~~~~~-~~~~~i~~~~~~~~~~-----~~~~pi~v~GGI~~env~~~~~~---gad~iivgsa 196 (211)
T cd00429 133 VMSVNPGFGGQKFIP-EVLEKIRKLRELIPEN-----NLNLLIEVDGGINLETIPLLAEA---GADVLVAGSA 196 (211)
T ss_pred EEEECCCCCCcccCH-HHHHHHHHHHHHHHhc-----CCCeEEEEECCCCHHHHHHHHHc---CCCEEEECHH
Confidence 445443335654444 4445566677665432 12368988999999999999864 4588888544
No 20
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.55 E-value=0.19 Score=41.73 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeeccccc
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQG 122 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~ 122 (130)
||.++++++++.+.+. ..+|+|-|--|+++|+.++++. . ||+.+| -|++.++
T Consensus 188 TG~~~d~~el~~a~~~--------------~~~pvlvGSGv~~eN~~~~l~~--a--dG~Ivg-T~lK~~G 239 (263)
T COG0434 188 TGSPPDLEELKLAKEA--------------VDTPVLVGSGVNPENIEELLKI--A--DGVIVG-TSLKKGG 239 (263)
T ss_pred CCCCCCHHHHHHHHhc--------------cCCCEEEecCCCHHHHHHHHHH--c--CceEEE-EEEccCC
Confidence 8999999998654322 2389999999999999999986 4 788883 3444443
No 21
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.91 E-value=0.57 Score=37.48 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 58 PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 58 ~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+.+.+.++.+|+. .+++|+.||.|+ ++|++++.+. .||+.+|.+
T Consensus 172 ~~~~~~~i~~lr~~----------~~~pI~vggGI~~~e~~~~~~~~----ADgvVvGSa 217 (242)
T cd04724 172 PDDLKELIKRIRKY----------TDLPIAVGFGISTPEQAAEVAKY----ADGVIVGSA 217 (242)
T ss_pred ChhHHHHHHHHHhc----------CCCcEEEEccCCCHHHHHHHHcc----CCEEEECHH
Confidence 45566677777753 157999999999 5599998753 589999644
No 22
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.16 E-value=0.64 Score=38.02 Aligned_cols=56 Identities=14% Similarity=-0.060 Sum_probs=41.4
Q ss_pred eecC-CCCC-CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeee
Q 046110 48 WVIG-TGKV-AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 48 WAIG-tG~~-as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
=-+| ||.. ..++.+.+.++.+|+.. ++|++.|+-+ +++++++++.. .||+.||.+-
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~----------~~pv~vGfGI~~~e~v~~~~~~----ADGviVGSai 231 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHT----------DLPVAVGFGISTPEQAAAIAAV----ADGVIVGSAL 231 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcC----------CCcEEEEcccCCHHHHHHHHHh----CCEEEEcHHH
Confidence 3378 7763 45667788888888632 4789999999 77999999853 4899995543
No 23
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.07 E-value=2.7 Score=31.76 Aligned_cols=65 Identities=18% Similarity=0.031 Sum_probs=40.3
Q ss_pred eeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 44 YEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 44 YEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
|=|+..=+||....+... +..+.+|+.+.+. ...+++.-+|.++++|++++++. ..||+.+|.+-
T Consensus 132 ~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~~~-----~~~~~i~v~GGI~~env~~l~~~---gad~iivgsai 196 (210)
T TIGR01163 132 LMSVNPGFGGQKFIPDTL-EKIREVRKMIDEN-----GLSILIEVDGGVNDDNARELAEA---GADILVAGSAI 196 (210)
T ss_pred EEEEcCCCCcccccHHHH-HHHHHHHHHHHhc-----CCCceEEEECCcCHHHHHHHHHc---CCCEEEEChHH
Confidence 434443336665555444 4556666655321 12357888999999999999853 45888886543
No 24
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.94 E-value=0.55 Score=39.27 Aligned_cols=43 Identities=5% Similarity=-0.096 Sum_probs=33.0
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
++|+++-|.| +++.+.+++... ..||++||.|.+ .+|.-|.+|
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~--g~DgVmiGRg~l-~nP~lf~~~ 237 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAIT--GCDAVMIGRGAL-NIPNLSRVV 237 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhcc--CCCEEEEcHHhH-hCcHHHHHh
Confidence 5899996666 889999998764 469999999876 456666543
No 25
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=86.71 E-value=3.1 Score=31.76 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=36.2
Q ss_pred C-CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 51 G-TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 51 G-tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
| ||. .......+..+.+|++.... +-..+|.-+|.++++|++++.+. .+||+-+|.+=
T Consensus 143 g~tg~-~~~~~~~~~i~~~~~~~~~~-----~~~~~i~v~GGI~~~nv~~l~~~---GaD~vvvgSai 201 (220)
T PRK05581 143 GFGGQ-KFIPEVLEKIRELRKLIDER-----GLDILIEVDGGINADNIKECAEA---GADVFVAGSAV 201 (220)
T ss_pred CCCcc-cccHHHHHHHHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHHc---CCCEEEEChhh
Confidence 5 554 44444455666666654321 00145667889999999999863 45888885543
No 26
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=85.74 E-value=2.1 Score=32.91 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 56 AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 56 as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
++|+++.++++.+|.. ..++.|.--|.+|++|+.++.+. .+|.+-+|
T Consensus 109 ~~~~~~~~~v~~l~~~---------~~~v~ie~SGGI~~~ni~~ya~~---gvD~isvg 155 (169)
T PF01729_consen 109 MSPEDLKEAVEELREL---------NPRVKIEASGGITLENIAEYAKT---GVDVISVG 155 (169)
T ss_dssp -CHHHHHHHHHHHHHH---------TTTSEEEEESSSSTTTHHHHHHT---T-SEEEEC
T ss_pred cCHHHHHHHHHHHhhc---------CCcEEEEEECCCCHHHHHHHHhc---CCCEEEcC
Confidence 3889999999888642 23478999999999999999864 46866663
No 27
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=83.51 E-value=6.8 Score=35.02 Aligned_cols=74 Identities=7% Similarity=0.048 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccccCCCceEEEeeeee---------------ecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCc
Q 046110 21 IDLGSVVETLCGKISNWDNVVLAYEPVW---------------VIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTR 85 (130)
Q Consensus 21 ~~l~~Ql~~~l~~i~~~~~vvIAYEPvW---------------AIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~ir 85 (130)
+.|.++++..++.+....+.+++|+|.| .+..|..||+.++.++.+.||+. +++
T Consensus 354 ~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~-----------~V~ 422 (479)
T TIGR03772 354 ERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENL-----------KVP 422 (479)
T ss_pred HHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCC
Confidence 3455555666665543346788999988 24578999999999999999852 455
Q ss_pred EEEcCCCCccc---HHHHHcccC
Q 046110 86 IIYRDTVINST---LQLNIQYYY 105 (130)
Q Consensus 86 ILYGGSV~~~N---~~~l~~~~~ 105 (130)
.|+--+-.+.+ ++.+.+..+
T Consensus 423 ~IF~Epq~~~~~~~l~~IA~e~G 445 (479)
T TIGR03772 423 AVFLEPNLAARSTTLNEIADELG 445 (479)
T ss_pred EEEEeCCCCCchHHHHHHHHHcC
Confidence 55544443333 456655433
No 28
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=83.36 E-value=5.9 Score=32.87 Aligned_cols=72 Identities=3% Similarity=0.031 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccccCCCceEEEeeeeee---------------cCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcE
Q 046110 22 DLGSVVETLCGKISNWDNVVLAYEPVWV---------------IGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRI 86 (130)
Q Consensus 22 ~l~~Ql~~~l~~i~~~~~vvIAYEPvWA---------------IGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irI 86 (130)
.|.++++..+... .++.+++|.|.|. +.+|..||+.++.++.+.||+. +++.
T Consensus 189 ~l~~~~~~~l~~~--~~~~~i~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~ 255 (311)
T PRK09545 189 QTDKQIGNQLAPV--KGKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQ-----------KATC 255 (311)
T ss_pred HHHHHHHHHhhcc--CCCcEEEECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCCE
Confidence 3444444444432 2455788999883 3468899999999999999852 4555
Q ss_pred EE-cCCCCcccHHHHHcccCC
Q 046110 87 IY-RDTVINSTLQLNIQYYYP 106 (130)
Q Consensus 87 LY-GGSV~~~N~~~l~~~~~~ 106 (130)
|+ -=..++..++.|.+..+.
T Consensus 256 If~e~~~~~~~~~~la~e~g~ 276 (311)
T PRK09545 256 VFAEPQFRPAVIESVAKGTSV 276 (311)
T ss_pred EEecCCCChHHHHHHHHhcCC
Confidence 55 566777778888765443
No 29
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.23 E-value=2.2 Score=34.01 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=38.9
Q ss_pred EEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeee
Q 046110 42 LAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 42 IAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
+..+|. ||.. =++.+.+..+.+|+... +.+|.-||.| |++|+++++.. ..||+++|.+-
T Consensus 158 msv~~~----~g~~-~~~~~~~~i~~lr~~~~---------~~~i~v~gGI~~~e~i~~~~~~---gaD~vvvGSai 217 (244)
T PRK13125 158 YGLRPA----TGVP-LPVSVERNIKRVRNLVG---------NKYLVVGFGLDSPEDARDALSA---GADGVVVGTAF 217 (244)
T ss_pred EEeCCC----CCCC-chHHHHHHHHHHHHhcC---------CCCEEEeCCcCCHHHHHHHHHc---CCCEEEECHHH
Confidence 355554 3443 35556666777776432 2368889999 99999998753 35899996443
No 30
>PLN02591 tryptophan synthase
Probab=82.46 E-value=2.9 Score=34.17 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=39.1
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeee
Q 046110 52 TGKVAV-PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 52 tG~~as-~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
||.... ++++++.++.+|+. .++|++-|--++ +++++++++. -.||+.||-+-
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~----------~~~Pv~vGFGI~~~e~v~~~~~~---GADGvIVGSal 221 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEV----------TDKPVAVGFGISKPEHAKQIAGW---GADGVIVGSAM 221 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhc----------CCCceEEeCCCCCHHHHHHHHhc---CCCEEEECHHH
Confidence 454433 78888888888873 147899999999 9999998753 24899995543
No 31
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.83 E-value=2.9 Score=34.35 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=38.9
Q ss_pred cC-CCCC-CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeee
Q 046110 50 IG-TGKV-AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 50 IG-tG~~-as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
-| ||.. .-++++.+..+.+|+.. +.||.-|+-|+ +++++++... -.||+.+|-+-
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ir~~t----------~~Pi~vGFGI~~~e~~~~~~~~---GADGvVVGSal 234 (263)
T CHL00200 177 TGVTGLKTELDKKLKKLIETIKKMT----------NKPIILGFGISTSEQIKQIKGW---NINGIVIGSAC 234 (263)
T ss_pred CCCCCCCccccHHHHHHHHHHHHhc----------CCCEEEECCcCCHHHHHHHHhc---CCCEEEECHHH
Confidence 46 5554 33567777788877632 46899999999 9999998753 24899995543
No 32
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=80.60 E-value=3.7 Score=33.33 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccChhhcCcC-cEEEcCCCCcc-cHHHHHcccCCCcceEEEeee
Q 046110 51 GTGKVAVPAQAQEVHAELRKWLKDNVNAEVAAST-RIIYRDTVINS-TLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 51 GtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~i-rILYGGSV~~~-N~~~l~~~~~~dvdG~Lig~~ 116 (130)
|+|.+.+++.++++.+. . .. +++|||-++.. ++++++.. ..||+.+|-+
T Consensus 165 ~~g~~~~~e~I~~v~~~----~----------~~~pvivGGGIrs~e~a~~~l~~---GAD~VVVGSa 215 (232)
T PRK04169 165 GAGDPVPPEMVKAVKKA----L----------DITPLIYGGGIRSPEQARELMAA---GADTIVVGNI 215 (232)
T ss_pred CCCCCCCHHHHHHHHHh----c----------CCCcEEEECCCCCHHHHHHHHHh---CCCEEEEChH
Confidence 45666666666544332 1 24 89999988776 88887754 3488999443
No 33
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=79.67 E-value=14 Score=30.19 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred HHHHHHHHhccccCCCceEEEeeeee-------------ec--CCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCc-E
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEPVW-------------VI--GTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTR-I 86 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEPvW-------------AI--GtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~ir-I 86 (130)
|.++++..+..+...++.+++|+|.| .+ ++|..|++.++.++.+.||+. +++ |
T Consensus 162 l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~i 230 (287)
T cd01137 162 LDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKE-----------KVPAV 230 (287)
T ss_pred HHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHh-----------CCCEE
Confidence 33444444444432345688999988 23 368899999999999999852 344 4
Q ss_pred EEcCCCCcccHHHHHcccCCC
Q 046110 87 IYRDTVINSTLQLNIQYYYPN 107 (130)
Q Consensus 87 LYGGSV~~~N~~~l~~~~~~d 107 (130)
+|--..++..++.|.+..+..
T Consensus 231 f~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 231 FVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred EEeCCCChHHHHHHHHHhCCc
Confidence 566777777788887754443
No 34
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=78.94 E-value=2.2 Score=35.64 Aligned_cols=42 Identities=10% Similarity=-0.063 Sum_probs=31.6
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeecccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSC 127 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~ 127 (130)
++||++-|.| +++.+.++++.. ..||++||.|.+ .+|--|.+
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~--gadgVmiGR~~l-~nP~if~~ 236 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYT--GADALMIGRAAQ-GRPWIFRE 236 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhcc--CCCEEEEChHhh-cCChHHHH
Confidence 5899995555 899999999763 469999988876 36655544
No 35
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=77.87 E-value=10 Score=27.07 Aligned_cols=29 Identities=3% Similarity=-0.167 Sum_probs=23.8
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEe
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig 114 (130)
+++++++|-++. +|+.++++. + .|++.+|
T Consensus 170 ~~pi~~~GGi~~~~~~~~~~~~-G--ad~v~vg 199 (200)
T cd04722 170 KVPVIAGGGINDPEDAAEALAL-G--ADGVIVG 199 (200)
T ss_pred CCCEEEECCCCCHHHHHHHHHh-C--CCEEEec
Confidence 579999998888 999999985 3 4888874
No 36
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=77.86 E-value=6.3 Score=30.43 Aligned_cols=55 Identities=9% Similarity=-0.119 Sum_probs=34.6
Q ss_pred eeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcc-cHHHHHcccCCCcceEEEeee
Q 046110 45 EPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS-TLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 45 EPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~-N~~~l~~~~~~dvdG~Lig~~ 116 (130)
=.+..-|+..-++.+.++++. +. .++|++++|-++.. .+.++++. ..||+++|.+
T Consensus 166 ~~~~~~g~~~g~~~~~i~~i~----~~----------~~ipvi~~GGi~~~~di~~~~~~---Ga~gv~vg~~ 221 (234)
T cd04732 166 TDISRDGTLSGPNFELYKELA----AA----------TGIPVIASGGVSSLDDIKALKEL---GVAGVIVGKA 221 (234)
T ss_pred EeecCCCccCCCCHHHHHHHH----Hh----------cCCCEEEecCCCCHHHHHHHHHC---CCCEEEEeHH
Confidence 356777765555544433332 21 14799998888754 48888763 5699999554
No 37
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=75.46 E-value=3.7 Score=36.77 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhh---c-----CcCcEEEcCCCCcccHHHHH
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEV---A-----ASTRIIYRDTVINSTLQLNI 101 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~---a-----~~irILYGGSV~~~N~~~l~ 101 (130)
.+++-+...+....++.|.+.||... + .+++|+||++++.+-+++|+
T Consensus 298 R~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il 352 (470)
T PHA02594 298 RPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRIL 352 (470)
T ss_pred eCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHH
Confidence 55666666666677777776665332 1 58999999999999999987
No 38
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=74.79 E-value=3.9 Score=34.42 Aligned_cols=41 Identities=7% Similarity=-0.128 Sum_probs=31.5
Q ss_pred CcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeecccccccccc
Q 046110 84 TRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSC 127 (130)
Q Consensus 84 irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~ 127 (130)
++|+.-|+| +++.+.+.++... +||+|||.+.. .+|--|.+
T Consensus 199 ipvi~NGdI~s~~~a~~~l~~tg--~DgVMigRga~-~nP~l~~~ 240 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLEYTG--ADGVMIGRGAL-GNPWLFRQ 240 (323)
T ss_pred CeEEeCCCcCCHHHHHHHHHhhC--CCEEEEcHHHc-cCCcHHHH
Confidence 789998887 7889999988644 69999988875 44554443
No 39
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=74.41 E-value=4.4 Score=36.19 Aligned_cols=69 Identities=7% Similarity=-0.107 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhh---c-----CcCcEEEcCCCCcccHHHHHc---ccCCCcceEEEeeeecccc
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEV---A-----ASTRIIYRDTVINSTLQLNIQ---YYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~---a-----~~irILYGGSV~~~N~~~l~~---~~~~dvdG~Lig~~s~~~~ 121 (130)
+..+++-+...+....|+.|.+.||.+. + .+++|+|||+++.+.+.+|+. ......|=+..|+|+.-.+
T Consensus 291 ~VR~DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~ 370 (463)
T PRK09198 291 VIRPDSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQ 370 (463)
T ss_pred EEECCCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCccccc
Confidence 3456677777778888888888765432 3 389999999999999999542 1233344233355654444
No 40
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=74.23 E-value=8.9 Score=30.52 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred eEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 40 VVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 40 vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++..=+|-++ |+..-+...+ -++.+|+.+.++ +-+++|.-.|.+|++|+.++.+. ..|++-+|.+
T Consensus 133 lvMtV~PGfg---Gq~fi~~~le-kI~~l~~~~~~~-----~~~~~I~vdGGI~~eni~~l~~a---GAd~vVvGSa 197 (220)
T PRK08883 133 LLMSVNPGFG---GQSFIPHTLD-KLRAVRKMIDES-----GRDIRLEIDGGVKVDNIREIAEA---GADMFVAGSA 197 (220)
T ss_pred EEEEecCCCC---CceecHhHHH-HHHHHHHHHHhc-----CCCeeEEEECCCCHHHHHHHHHc---CCCEEEEeHH
Confidence 4456677442 4433333333 344444444321 22477878999999999999863 4588888644
No 41
>PLN02334 ribulose-phosphate 3-epimerase
Probab=74.20 E-value=21 Score=27.98 Aligned_cols=30 Identities=13% Similarity=-0.072 Sum_probs=23.2
Q ss_pred CcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+|.-=|.++++|++++++. ..||+-+|.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a---Gad~vvvgsa 204 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA---GANVIVAGSA 204 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc---CCCEEEEChH
Confidence 46766777999999999864 4588888654
No 42
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=74.02 E-value=10 Score=30.17 Aligned_cols=60 Identities=13% Similarity=-0.092 Sum_probs=35.6
Q ss_pred EeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 43 AYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 43 AYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.|=++=.-|+..-++-+.+.++.+ . ..+|++++|-| +.+.+.++.+.....+||+++|.+
T Consensus 164 iv~~~~~~g~~~G~d~~~i~~i~~----~----------~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 164 VVTDVTKDGTLTGPNLELLREVCA----R----------TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred EEEeecCCCCccCCCHHHHHHHHh----h----------CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 344666677666555444433322 1 14789996655 446666665433346799999554
No 43
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=73.95 E-value=6.3 Score=31.98 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=35.9
Q ss_pred CCCC-CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 52 TGKV-AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 52 tG~~-as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
||.. .-++++.+.++.+|+.. +.+|.-||-++ +++++++.+. -.||+.+|.+
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgfGI~~~e~~~~~~~~---GADgvVvGSa 229 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAYS----------AKPVLVGFGISKPEQVKQAIDA---GADGVIVGSA 229 (256)
T ss_pred CCCcccCChhHHHHHHHHHhhc----------CCCEEEeCCCCCHHHHHHHHHc---CCCEEEECHH
Confidence 5653 23455677777777632 24788899997 9999998753 2489999554
No 44
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=72.86 E-value=2.7 Score=32.25 Aligned_cols=43 Identities=9% Similarity=-0.111 Sum_probs=32.5
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|++.|++ +++.+.+++... ..|++++|.+.. .||+-|..|
T Consensus 183 ~ipvi~~Ggi~~~~d~~~~l~~~--gad~V~igr~~l-~~P~~~~~~ 226 (231)
T cd02801 183 SIPVIANGDIFSLEDALRCLEQT--GVDGVMIGRGAL-GNPWLFREI 226 (231)
T ss_pred CCeEEEeCCCCCHHHHHHHHHhc--CCCEEEEcHHhH-hCCHHHHhh
Confidence 5899998888 788999998753 459999988766 466666543
No 45
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=72.53 E-value=24 Score=28.66 Aligned_cols=58 Identities=3% Similarity=0.021 Sum_probs=42.2
Q ss_pred CceEEEeeeee---------------ecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCc-EEEcCCCCcccHHHHH
Q 046110 38 DNVVLAYEPVW---------------VIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTR-IIYRDTVINSTLQLNI 101 (130)
Q Consensus 38 ~~vvIAYEPvW---------------AIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~ir-ILYGGSV~~~N~~~l~ 101 (130)
++.++.|.|.| .+.++..+++.++.++.+.||+. +++ |+|=-.++..-++.|.
T Consensus 179 ~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~If~e~~~~~~~~~~ia 247 (286)
T cd01019 179 TKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEK-----------GATCVFAEPQFHPKIAETLA 247 (286)
T ss_pred CCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHc-----------CCcEEEecCCCChHHHHHHH
Confidence 45678898887 24468999999999999999852 344 4555677777778887
Q ss_pred cccCC
Q 046110 102 QYYYP 106 (130)
Q Consensus 102 ~~~~~ 106 (130)
+..+.
T Consensus 248 ~~~g~ 252 (286)
T cd01019 248 EGTGA 252 (286)
T ss_pred HhcCc
Confidence 65443
No 46
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=71.66 E-value=8.7 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.075 Sum_probs=34.2
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeeeecccc
Q 046110 47 VWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 47 vWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
+=.-||+.-++.+.++++.+. ..+|++|||-|.. +.++++++ ..++|+++ ||+-|+
T Consensus 167 i~~~G~~~g~~~~~~~~i~~~--------------~~ipvi~~GGi~s~edi~~l~~---~G~~~viv--Gsal~~ 223 (233)
T cd04723 167 IDRVGSGQGPDLELLERLAAR--------------ADIPVIAAGGVRSVEDLELLKK---LGASGALV--ASALHD 223 (233)
T ss_pred cCccccCCCcCHHHHHHHHHh--------------cCCCEEEeCCCCCHHHHHHHHH---cCCCEEEE--ehHHHc
Confidence 334566665555554443321 1478999777654 77777775 35799999 555454
No 47
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=71.42 E-value=5 Score=35.31 Aligned_cols=65 Identities=9% Similarity=-0.091 Sum_probs=45.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhccChhh---c-----CcCcEEEcCCCCcccHHHHHc---ccCCCcceEEEeeeec
Q 046110 54 KVAVPAQAQEVHAELRKWLKDNVNAEV---A-----ASTRIIYRDTVINSTLQLNIQ---YYYPNLFIELTLAFSI 118 (130)
Q Consensus 54 ~~as~~~i~~v~~~IR~~l~~~~~~~~---a-----~~irILYGGSV~~~N~~~l~~---~~~~dvdG~Lig~~s~ 118 (130)
..+++-+..++....|+.|.+.||.++ + .+++|+||++++.+.+++|+. ......|=+-.|.|+.
T Consensus 289 iRpDSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~L~~~G~~~dNi~fGvGt~ 364 (407)
T cd01569 289 IRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGG 364 (407)
T ss_pred EECCCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHHHHHCCCccccceEecCcc
Confidence 456777777888888888888665322 3 489999999999999997543 1245556444455554
No 48
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=71.42 E-value=8.3 Score=30.53 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=32.0
Q ss_pred eeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 46 PVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 46 PvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
=+=.-||+.-++.+.++++.+. ..+|+++||-|. ++-++++.+ ...||+++|.+
T Consensus 161 dI~~dGt~~G~d~eli~~i~~~--------------~~~pvia~GGi~s~ed~~~l~~---~Ga~~vivgsa 215 (221)
T TIGR00734 161 DIHSVGTMKGPNLELLTKTLEL--------------SEHPVMLGGGISGVEDLELLKE---MGVSAVLVATA 215 (221)
T ss_pred ECCccccCCCCCHHHHHHHHhh--------------CCCCEEEeCCCCCHHHHHHHHH---CCCCEEEEhHH
Confidence 3444577776665555433222 147899988775 345555443 46799999433
No 49
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=71.08 E-value=9.5 Score=29.46 Aligned_cols=32 Identities=6% Similarity=-0.166 Sum_probs=22.1
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+|++++|-+ +++.++++++. -.+||+++|.+
T Consensus 190 ~ipvia~GGi~~~~di~~~~~~--g~~~gv~vg~a 222 (233)
T PRK00748 190 PIPVIASGGVSSLDDIKALKGL--GAVEGVIVGRA 222 (233)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc--CCccEEEEEHH
Confidence 3788886655 45778888765 23699999444
No 50
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=70.94 E-value=8.8 Score=30.12 Aligned_cols=32 Identities=6% Similarity=-0.046 Sum_probs=24.5
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+|+++.|.+ +++.+.++++. -.+||+++|.+
T Consensus 193 ~~pvia~GGi~~~~di~~~l~~--~g~dgv~vg~a 225 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEE--GGADAALAASI 225 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHh--CCCCEEEEeHH
Confidence 4789987777 57899999875 34689999555
No 51
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.43 E-value=12 Score=29.86 Aligned_cols=29 Identities=7% Similarity=-0.225 Sum_probs=20.6
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEe
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig 114 (130)
++|++|||-+ +++.++++++. + .|++.+|
T Consensus 176 ~~Pv~vGGGIrs~e~a~~l~~~-G--AD~VVVG 205 (205)
T TIGR01769 176 GIPLIVGGGIRSPEIAYEIVLA-G--ADAIVTG 205 (205)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc-C--CCEEEeC
Confidence 3689998888 67778887643 2 4777764
No 52
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.09 E-value=9.9 Score=29.64 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=25.0
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
.+|++++|.++ ++++.++.. ...||+++|.+-
T Consensus 193 ~iPvia~GGI~~~~di~~~~~---~Ga~gv~vgsa~ 225 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKE---AGAAGVVVGSAL 225 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHH---cCCCEEEEEHHH
Confidence 47999999998 899999754 456899995543
No 53
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=69.90 E-value=2.5 Score=35.04 Aligned_cols=41 Identities=7% Similarity=-0.125 Sum_probs=28.0
Q ss_pred cCcEEE-cCCCCcccHHHHHcccCCCcceEEEeeeeccccccccc
Q 046110 83 STRIIY-RDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFS 126 (130)
Q Consensus 83 ~irILY-GGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~ 126 (130)
++++++ ||--+.+-+.++++.. .+||+|||.|.+ .+|--|.
T Consensus 183 ~ipvi~NGdI~s~~d~~~~~~~t--g~dgvMigRgal-~nP~lf~ 224 (309)
T PF01207_consen 183 PIPVIANGDIFSPEDAERMLEQT--GADGVMIGRGAL-GNPWLFR 224 (309)
T ss_dssp TSEEEEESS--SHHHHHHHCCCH---SSEEEESHHHC-C-CCHHC
T ss_pred cceeEEcCccCCHHHHHHHHHhc--CCcEEEEchhhh-hcCHHhh
Confidence 378999 6666778888888764 469999988876 4555554
No 54
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=69.89 E-value=8.8 Score=30.34 Aligned_cols=31 Identities=10% Similarity=-0.096 Sum_probs=22.8
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++|+|-| +.+.+.++.+ ..+||+++|.+
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~---~G~~gvivg~a 222 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKK---AGIDGVIVGSA 222 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHH---TTECEEEESHH
T ss_pred CCCEEEecCCCCHHHHHHHHH---CCCcEEEEehH
Confidence 4799999988 5577777764 56699999544
No 55
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=69.72 E-value=7.5 Score=32.08 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhcccc-CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 18 RGLIDLGSVVETLCGKIS-NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~-~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
||.+.+..|..++-.-+. ...++. =+|...++. +-...|++++.. .+.++.|+=||-|+++|
T Consensus 122 rAFD~~~d~~~ale~li~~Gv~RIL---------TsGg~~sa~---eg~~~l~~li~~-----a~gri~Im~GaGV~~~N 184 (241)
T COG3142 122 RAFDECPDPLEALEQLIELGVERIL---------TSGGKASAL---EGLDLLKRLIEQ-----AKGRIIIMAGAGVRAEN 184 (241)
T ss_pred hhhhhcCCHHHHHHHHHHCCCcEEe---------cCCCcCchh---hhHHHHHHHHHH-----hcCCEEEEeCCCCCHHH
Confidence 556666655554322222 233432 135555444 455666666653 24689999999999999
Q ss_pred HHHHHcc
Q 046110 97 LQLNIQY 103 (130)
Q Consensus 97 ~~~l~~~ 103 (130)
+.+|...
T Consensus 185 ~~~l~~~ 191 (241)
T COG3142 185 IAELVLL 191 (241)
T ss_pred HHHHHHh
Confidence 9999643
No 56
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=69.49 E-value=10 Score=29.48 Aligned_cols=32 Identities=9% Similarity=-0.172 Sum_probs=21.1
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+|++++|-++ ++.+.+++. ...+||+++|.+
T Consensus 197 ~ipvia~GGi~s~~di~~~l~--~~gadgV~vg~a 229 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVAL--EAGASAVAAASL 229 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHH--HcCCCEEEEehh
Confidence 47899988776 344455233 356799999544
No 57
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.07 E-value=12 Score=30.07 Aligned_cols=32 Identities=6% Similarity=-0.144 Sum_probs=23.6
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++++|-|.. +.+.++++. ..+||+++|.+
T Consensus 196 ~ipvIasGGv~s~eD~~~l~~~--~GvdgVivg~a 228 (258)
T PRK01033 196 KIPLIALGGAGSLDDIVEAILN--LGADAAAAGSL 228 (258)
T ss_pred CCCEEEeCCCCCHHHHHHHHHH--CCCCEEEEcce
Confidence 579999776654 778887744 46699999665
No 58
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=68.04 E-value=9 Score=30.87 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=23.0
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.++++|||-+ +++.++++++. ..|++.+|-+
T Consensus 175 ~~pl~vGGGIrs~e~a~~l~~a---GAD~VVVGsa 206 (219)
T cd02812 175 DTPLIVGGGIRSGEQAKEMAEA---GADTIVVGNI 206 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc---CCCEEEECch
Confidence 4799999888 67888888753 3488888443
No 59
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=68.02 E-value=18 Score=25.38 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
..+...+.++.+.||+.. .+++|+.||..-..+.++++.. ..+|.+..|=|
T Consensus 49 ~~~~~~~~~~~~~ik~~~---------p~~~iv~GG~~~t~~p~~~~~~--~~~D~vv~GEg 99 (127)
T cd02068 49 TSAIYEALELAKIAKEVL---------PNVIVVVGGPHATFFPEEILEE--PGVDFVVIGEG 99 (127)
T ss_pred cccHHHHHHHHHHHHHHC---------CCCEEEECCcchhhCHHHHhcC--CCCCEEEECCc
Confidence 444555666666666532 2578999998877788875443 56787777544
No 60
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=67.77 E-value=6.1 Score=32.56 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=23.9
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
.+++.+||-|+.+|++++++. -.|-+.+|
T Consensus 76 ~~~v~vGGGIr~e~v~~~l~a---Ga~rVvIG 104 (253)
T TIGR02129 76 PGGLQVGGGINDTNAQEWLDE---GASHVIVT 104 (253)
T ss_pred CCCEEEeCCcCHHHHHHHHHc---CCCEEEEC
Confidence 479999999999999999974 44777773
No 61
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=67.53 E-value=19 Score=28.76 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=43.7
Q ss_pred HHHHHHHHhccccCCCceEEEeeeee------------ec-CCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEE-E
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEPVW------------VI-GTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRII-Y 88 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEPvW------------AI-GtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irIL-Y 88 (130)
|.++++..++.. .++.+++|+|.| ++ +.|..+|+.++.++.+.||+. +++.+ +
T Consensus 157 l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~ 223 (266)
T cd01018 157 LDSEIRTILSKL--KQRAFMVYHPAWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEK-----------GVRVVFV 223 (266)
T ss_pred HHHHHHHHHhcC--CCCeEEEECchhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEE
Confidence 344444444433 245678898887 23 468889999999999999852 34444 4
Q ss_pred cCCCCcccHHHHHcc
Q 046110 89 RDTVINSTLQLNIQY 103 (130)
Q Consensus 89 GGSV~~~N~~~l~~~ 103 (130)
==+.++.-++.+.+.
T Consensus 224 e~~~~~~~~~~la~~ 238 (266)
T cd01018 224 QPQFSTKSAEAIARE 238 (266)
T ss_pred cCCCCcHHHHHHHHH
Confidence 455566666666654
No 62
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=66.98 E-value=33 Score=26.91 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=41.4
Q ss_pred HHHHHHHHhccccCCCceEEEeeeeee---------------cCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEE
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEPVWV---------------IGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRII 87 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEPvWA---------------IGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irIL 87 (130)
+.++++..+..+. .+.+++|.|.|. ++.|..+|++++.++.+.||+ .+++++
T Consensus 137 l~~~~~~~~~~~~--~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~-----------~~v~~i 203 (256)
T PF01297_consen 137 LDAEIKEKLAKLP--GRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKE-----------NKVKCI 203 (256)
T ss_dssp HHHHHHHHHTTSS--GGEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHH-----------TT-SEE
T ss_pred HHHHHHHHhhccc--CCeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhh-----------cCCcEE
Confidence 3344444444432 266778888762 568999999999999999985 245555
Q ss_pred Ec-CCCCcccHHHHHcc
Q 046110 88 YR-DTVINSTLQLNIQY 103 (130)
Q Consensus 88 YG-GSV~~~N~~~l~~~ 103 (130)
+. =..++.-++.|.+.
T Consensus 204 ~~e~~~~~~~~~~la~~ 220 (256)
T PF01297_consen 204 FTEPQFSSKLAEALAKE 220 (256)
T ss_dssp EEETTS-THHHHHHHHC
T ss_pred EecCCCChHHHHHHHHH
Confidence 54 44455556666544
No 63
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=65.79 E-value=26 Score=26.27 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=25.1
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++++.=+|-|+++|++++++. ..|++.+|.+
T Consensus 158 ~~~i~~~GGI~~~~i~~~~~~---Gad~vvvGsa 188 (202)
T cd04726 158 GVKVAVAGGITPDTLPEFKKA---GADIVIVGRA 188 (202)
T ss_pred CCCEEEECCcCHHHHHHHHhc---CCCEEEEeeh
Confidence 478999999999999999864 4588888654
No 64
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=64.15 E-value=21 Score=28.11 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhc--cC-h--hhcCcCcEEEcCCCCcccHHHHHcccCCC
Q 046110 36 NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDN--VN-A--EVAASTRIIYRDTVINSTLQLNIQYYYPN 107 (130)
Q Consensus 36 ~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~--~~-~--~~a~~irILYGGSV~~~N~~~l~~~~~~d 107 (130)
....+.|-|.|. ..+...+. +.|++..... .. . ..--.+|+.|||++.+ |.+++......+
T Consensus 48 ~~~sllv~fdp~-------~~~~~~l~---~~l~~~~~~~~~~~~~~~~r~~~IPV~Y~~~~gp-DL~~vA~~~gLs 113 (201)
T smart00796 48 GYRSLLVHFDPL-------VIDPAALL---ARLRALEALPLAEALEVPGRIIEIPVCYGGEFGP-DLEFVARHNGLS 113 (201)
T ss_pred cceEEEEEEcCC-------CCCHHHHH---HHHHHHHhcccccccCCCCcEEEEeeEeCCCCCC-CHHHHHHHhCcC
Confidence 356788889883 23333333 3444333221 11 1 1122589999999976 777776654443
No 65
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=63.91 E-value=56 Score=26.28 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=40.2
Q ss_pred CceEEEeeeeee---------------cCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcE-EEcCCCCcccHHHHH
Q 046110 38 DNVVLAYEPVWV---------------IGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRI-IYRDTVINSTLQLNI 101 (130)
Q Consensus 38 ~~vvIAYEPvWA---------------IGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irI-LYGGSV~~~N~~~l~ 101 (130)
.+.+++|+|.|. +.+|..+++.++.++.+.||+. +++. +|-=.+++..++.+.
T Consensus 171 ~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~~~~~~la 239 (282)
T cd01017 171 GKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS-----------DVKYIFFEENASSKIAETLA 239 (282)
T ss_pred CCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEEeCCCChHHHHHHH
Confidence 345778888774 3468899999999999999852 3444 445566667777776
Q ss_pred cccCC
Q 046110 102 QYYYP 106 (130)
Q Consensus 102 ~~~~~ 106 (130)
+..+.
T Consensus 240 ~~~g~ 244 (282)
T cd01017 240 KETGA 244 (282)
T ss_pred HHcCC
Confidence 55433
No 66
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=63.36 E-value=2.5 Score=32.74 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=26.2
Q ss_pred eecC-CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCC
Q 046110 48 WVIG-TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYP 106 (130)
Q Consensus 48 WAIG-tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~ 106 (130)
...| ||++.+-+.+.+..+.. ...+++.+|-.||+|+.+.+....+
T Consensus 124 ~~~GgtG~~~dw~~~~~~~~~~-------------~~~p~iLAGGl~p~NV~~ai~~~~p 170 (197)
T PF00697_consen 124 SGSGGTGKTFDWSLLKKIVESY-------------SPKPVILAGGLNPENVREAIRQVRP 170 (197)
T ss_dssp SSSTSSSS---GGGGCCCHHT--------------GTSTEEEESS--TTTHHHHHHHC--
T ss_pred cCCCcCCcccCHHHhhhhhhhc-------------ccCcEEEEcCCChHHHHHHHHhcCc
Confidence 3455 88888776654322211 1468999999999999999985344
No 67
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=62.96 E-value=20 Score=24.78 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHH-Hhcccc--CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC
Q 046110 16 KWRGLIDLGSVVET-LCGKIS--NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV 92 (130)
Q Consensus 16 ~~~~~~~l~~Ql~~-~l~~i~--~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV 92 (130)
+.|+.+.+.+-|+. +++ .+ ..+.++|.- -.|...+..+++++.+.||+.+. .+..|++|=++
T Consensus 13 ~~r~~~Av~~Al~spLl~-~~i~~A~~vLvni------~~~~d~~l~ev~~~~~~i~~~~~--------~~a~ii~G~~i 77 (95)
T PF12327_consen 13 ENRAEEAVEQALNSPLLD-VDIKGAKGVLVNI------TGGPDLSLSEVNEAMEIIREKAD--------PDANIIWGASI 77 (95)
T ss_dssp TTHHHHHHHHHHTSTTST-S-GGG-SEEEEEE------EE-TTS-HHHHHHHHHHHHHHSS--------TTSEEEEEEEE
T ss_pred ccHHHHHHHHHHhCcccc-CChHHhceEEEEE------EcCCCCCHHHHHHHHHHHHHHhh--------cCceEEEEEEE
Confidence 45667777777754 444 33 466766643 34667999999999999998763 35689999888
Q ss_pred Ccc
Q 046110 93 INS 95 (130)
Q Consensus 93 ~~~ 95 (130)
+++
T Consensus 78 d~~ 80 (95)
T PF12327_consen 78 DEE 80 (95)
T ss_dssp -TT
T ss_pred CCC
Confidence 753
No 68
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=62.69 E-value=15 Score=29.73 Aligned_cols=40 Identities=8% Similarity=-0.119 Sum_probs=24.7
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeeeecccc-cccccc
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAFSIRYQ-GDVFSC 127 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~s~~~~-~~~F~~ 127 (130)
+++++|||-+.. +.++++++. ..|++.+ ||..++ ++.+.+
T Consensus 179 ~~pl~vGGGIrs~e~a~~l~~a---GAD~VVV--Gs~~~~dp~~~~~ 220 (223)
T TIGR01768 179 KARLFVGGGIRSVEKAREMAEA---GADTIVT--GNVIEEDVDKALE 220 (223)
T ss_pred CCCEEEecCCCCHHHHHHHHHc---CCCEEEE--CcHHhhCHHHHHH
Confidence 478999887754 666676642 3488888 554443 344433
No 69
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=62.63 E-value=2.7 Score=28.74 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHHH----------HHHhccChhhcCcCcEEEcC
Q 046110 55 VAVPAQAQEVHAELRK----------WLKDNVNAEVAASTRIIYRD 90 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~----------~l~~~~~~~~a~~irILYGG 90 (130)
.++|++.+++|..+-+ .+.++.|+..+..+-||||=
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGl 56 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGL 56 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHH
Confidence 4678888888776643 35566788889999999983
No 70
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=62.61 E-value=45 Score=26.97 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHHHHHHHhccccCCCceEEEeeeee---------------ecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEE
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEPVW---------------VIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRII 87 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEPvW---------------AIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irIL 87 (130)
|.++++..+..+....+.++.|.|.| .+..|.-+|+.++.++.+.||+. +++.+
T Consensus 146 l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~i 214 (276)
T cd01016 146 LDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER-----------KIKAI 214 (276)
T ss_pred HHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc-----------CCCEE
Confidence 33334444443322235677887744 34468889999999999999852 45555
Q ss_pred Ec-CCCCcccHHHHHc
Q 046110 88 YR-DTVINSTLQLNIQ 102 (130)
Q Consensus 88 YG-GSV~~~N~~~l~~ 102 (130)
+- =..++.-++.|..
T Consensus 215 f~e~~~~~~~~~~l~~ 230 (276)
T cd01016 215 FVESSVNQKSIEALQD 230 (276)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 54 4555555555543
No 71
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=61.96 E-value=12 Score=31.65 Aligned_cols=33 Identities=6% Similarity=-0.125 Sum_probs=25.8
Q ss_pred cCcEE---EcCCCCcccHHHHHcccCCCcceEEEeeeec
Q 046110 83 STRII---YRDTVINSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 83 ~irIL---YGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
++|++ -||=-+|+|+..++.. ..||+++|.+=.
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~mel---GAdGVaVGSaI~ 232 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQL---GADGVFVGSGIF 232 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHc---CCCEEEEhHHhh
Confidence 57887 5777799999999974 459999966543
No 72
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=61.04 E-value=15 Score=31.38 Aligned_cols=53 Identities=8% Similarity=-0.127 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeeccc
Q 046110 58 PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRY 120 (130)
Q Consensus 58 ~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~ 120 (130)
+++..+....+|+.+.+. | ..++.|..-|.+|.+|++++.+. +| .+|.+++-+
T Consensus 240 ~g~l~~~v~~vr~~ld~~-g---~~~v~IeaSGgI~~~ni~~ya~~----vD--~isvGs~~~ 292 (343)
T PRK08662 240 RGNFRKIVREVRWTLDIR-G---YEHVKIFVSGGLDPERIRELRDV----VD--GFGVGTYIS 292 (343)
T ss_pred CccHHHHHHHHHHHHHhc-C---CCCeEEEEeCCCCHHHHHHHHHh----CC--EEEcCcccc
Confidence 488888888888776543 1 13468999999999999999864 56 345666544
No 73
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.09 E-value=9 Score=31.58 Aligned_cols=42 Identities=7% Similarity=-0.142 Sum_probs=29.5
Q ss_pred cCcEEE-cCCCCcccHHHHHcccCCCcceEEEeeeecccccccccc
Q 046110 83 STRIIY-RDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSC 127 (130)
Q Consensus 83 ~irILY-GGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~ 127 (130)
++|+++ ||--+++.+.++++. ...||+++|.+.+ .||.-|.+
T Consensus 192 ~ipvi~nGgI~~~~da~~~l~~--~gad~VmigR~~l-~~P~l~~~ 234 (319)
T TIGR00737 192 RIPVIGNGDIFSPEDAKAMLET--TGCDGVMIGRGAL-GNPWLFRQ 234 (319)
T ss_pred CCcEEEeCCCCCHHHHHHHHHh--hCCCEEEEChhhh-hCChHHHH
Confidence 478888 555578889998865 3459999988866 35554443
No 74
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=60.03 E-value=13 Score=30.02 Aligned_cols=34 Identities=3% Similarity=-0.151 Sum_probs=22.4
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++|+|-|+. +.++++.+.....+||+++|.+
T Consensus 193 ~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 193 DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 579999888874 4444443222356899999554
No 75
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.92 E-value=11 Score=29.90 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=18.7
Q ss_pred cCcCcEEEcCCCCcccHHHHHccc
Q 046110 81 AASTRIIYRDTVINSTLQLNIQYY 104 (130)
Q Consensus 81 a~~irILYGGSV~~~N~~~l~~~~ 104 (130)
+.++.|+=||-|+++|+.+|....
T Consensus 168 ~~~i~Im~GgGv~~~nv~~l~~~t 191 (201)
T PF03932_consen 168 KGRIEIMPGGGVRAENVPELVEET 191 (201)
T ss_dssp TTSSEEEEESS--TTTHHHHHHHH
T ss_pred CCCcEEEecCCCCHHHHHHHHHhh
Confidence 347889999999999999998753
No 76
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=59.02 E-value=19 Score=29.64 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHH
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNI 101 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~ 101 (130)
|..++ +.+-...|++..... +..+ |+=||-|+++|+.+|.
T Consensus 149 Gg~~~---a~~g~~~L~~lv~~a-----~~~~-Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 149 GQQQD---AEQGLSLIMELIAAS-----DGPI-IMAGAGVRLSNLHKFL 188 (248)
T ss_pred CCCCC---HHHHHHHHHHHHHhc-----CCCE-EEeCCCCCHHHHHHHH
Confidence 55665 445566666554422 2233 9999999999999995
No 77
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=58.15 E-value=3.5 Score=28.50 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhccChhhcCcCcEEEcCC
Q 046110 61 AQEVHAELRKWLKDNVNAEVAASTRIIYRDT 91 (130)
Q Consensus 61 i~~v~~~IR~~l~~~~~~~~a~~irILYGGS 91 (130)
+++-.++--..+.++.|+..+..+-||||.-
T Consensus 27 iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~v 57 (77)
T PRK01026 27 IEEKVEFTNAEIFQRIGKKVGRDIGILYGLV 57 (77)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 3333444444566777888899999999953
No 78
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=57.99 E-value=3.6 Score=28.00 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhccChhhcCcCcEEEcC
Q 046110 60 QAQEVHAELRKWLKDNVNAEVAASTRIIYRD 90 (130)
Q Consensus 60 ~i~~v~~~IR~~l~~~~~~~~a~~irILYGG 90 (130)
.+++-.++--..+.++.|++.+..+-||||-
T Consensus 23 ~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~ 53 (70)
T PF04210_consen 23 EIEEKVEFTNAEIAQRAGKKIGRDIGILYGL 53 (70)
T ss_pred HHHHHHHhHHHHHHHHHhHHhhhHHHHHHHH
Confidence 3444444445556777788889999999984
No 79
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=57.83 E-value=34 Score=26.26 Aligned_cols=32 Identities=3% Similarity=-0.194 Sum_probs=24.8
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
++|++-+|.++. +|+.+++.. . .||+.+|.+-
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~-G--adgV~vgS~l 188 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALAL-G--ADGVQMGTRF 188 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-C--CcEEEEchhh
Confidence 468888888987 999998863 3 4899996543
No 80
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=57.53 E-value=16 Score=31.36 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
+.|.++++++.+-+|+..+. | .+||+ ||-++|+.
T Consensus 103 a~s~d~~~ei~eglr~~a~k-f------gvpiv-GGhthpd~ 136 (324)
T COG2144 103 AKSEDQAREILEGLRKGARK-F------GVPIV-GGHTHPDT 136 (324)
T ss_pred cCCHHHHHHHHHHHHHHHHh-c------CCcee-cCccCCCC
Confidence 67889999999999987654 3 47888 88777764
No 81
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=57.19 E-value=6.5 Score=32.96 Aligned_cols=41 Identities=5% Similarity=-0.091 Sum_probs=30.4
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|++-|.| +++.+.+++. ..||++||.+.+ .+|.-|.+|
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~----~aDgVmIGRa~l-~nP~~~~~~ 246 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ----HVDGVMIGRAAY-HNPYLLAEV 246 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh----cCCEEEEcHHHH-hCCHHHHHH
Confidence 5789995555 7888988885 269999988876 466666543
No 82
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=56.88 E-value=21 Score=30.97 Aligned_cols=62 Identities=15% Similarity=-0.012 Sum_probs=38.5
Q ss_pred ecCCCCC---CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcc--cCCCcceEEEeeeeccccc
Q 046110 49 VIGTGKV---AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQY--YYPNLFIELTLAFSIRYQG 122 (130)
Q Consensus 49 AIGtG~~---as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~--~~~dvdG~Lig~~s~~~~~ 122 (130)
-|+|+-- .++.++.+..+.+ |. +.++||+-|||=||+-=.+.+.. .-.+++-.|. +|+++|.
T Consensus 172 lIsTdPki~D~p~~EAak~lEdv---Lq-------AVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclL--aSanldl 238 (403)
T COG2069 172 LISTDPKIKDTPAKEAAKTLEDV---LQ-------AVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLL--ASANLDL 238 (403)
T ss_pred eecCCccccCCCHHHHHHHHHHH---HH-------hcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEe--ecccccc
Confidence 3887643 3455555444444 42 45789999999999865444431 1246677888 6666664
No 83
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=56.83 E-value=99 Score=25.45 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=50.5
Q ss_pred HHHHHHHHhccccCCCceEEEeee---------------eeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcC-cE
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEP---------------VWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAAST-RI 86 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEP---------------vWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~i-rI 86 (130)
|.+..+..+..+.. ++-+|.++| +|-+.++.-+|+.+++++.+.||+. ++ -|
T Consensus 178 l~~~~~~~~~~~~~-~r~~vt~h~af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~-----------~i~~I 245 (303)
T COG0803 178 LDEEAKAKLSKIPA-QRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKK-----------NIKAI 245 (303)
T ss_pred HHHHHHHHHhcCCc-CcEEEeecchHHHHHhccCCccccccCcCcccCCCHHHHHHHHHHHHHc-----------CCCEE
Confidence 33334444444443 455666654 4455667889999999999999852 23 35
Q ss_pred EEcCCCCcccHHHHHcccCCCcce
Q 046110 87 IYRDTVINSTLQLNIQYYYPNLFI 110 (130)
Q Consensus 87 LYGGSV~~~N~~~l~~~~~~dvdG 110 (130)
++=.+++...++.|.+..+..+.+
T Consensus 246 f~e~~~~~~~~~~la~e~g~~~~~ 269 (303)
T COG0803 246 FVESNVSSKSAETLAKETGVKILG 269 (303)
T ss_pred EEeCCCChHHHHHHHHHhCCcccc
Confidence 667888999999998875544443
No 84
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.39 E-value=16 Score=29.05 Aligned_cols=41 Identities=0% Similarity=-0.039 Sum_probs=26.8
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
.+|+.+||-|+. +-++.+++ ...|++.+|.+ .++++.+.++
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~---~G~~~vivGta--a~~~~~l~~~ 114 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYE---IGVENVIIGTK--AFDLEFLEKV 114 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHH---CCCCEEEECch--hcCHHHHHHH
Confidence 478999888864 44556654 45689999644 4466655443
No 85
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=56.20 E-value=17 Score=29.31 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChh---hcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAE---VAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~---~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
|..++.-+..+..+.+|+.+....+.+ +...++|+|+++++.+-+.+|...-...+.-...|.|+
T Consensus 115 gvR~DSGD~~~~~~~~r~~f~~~~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~~~~g~~~~fGVGT 182 (245)
T PF04095_consen 115 GVRPDSGDPAELSEKLRKIFDEAVGIKGYKVLPSKKIIASDGLDEEKIEELLEQGAEKGFNDSFGVGT 182 (245)
T ss_dssp EEEE-SS-HHHHHHHHHHHHHHTETTTGGEE-TCSEEEEESS-SHHHHHHHHHHHCCTTSEEEEEESH
T ss_pred eeecCCCChHHHHHHHHHHHHHHhCCCCccccceEEEEEeCCCCHHHHHHHHHHhhcccceeEeecCc
Confidence 345566666667778888876653321 22378999999999999999998644322233445554
No 86
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=56.07 E-value=3.9 Score=27.83 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhccChhhcCcCcEEEcCCC
Q 046110 61 AQEVHAELRKWLKDNVNAEVAASTRIIYRDTV 92 (130)
Q Consensus 61 i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV 92 (130)
+++-.++--..+.++.|+..+..+-|+||.-+
T Consensus 24 iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~vi 55 (70)
T TIGR01149 24 IEEKVEFVNGEVAQRIGKKVGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 33334444445667778888999999999643
No 87
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.16 E-value=29 Score=29.04 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEee
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~ 115 (130)
..++++++++.+.+|+. ..++++.=-|-+|.+|+.++.+. .+|++-+|.
T Consensus 224 n~~~e~l~~av~~~~~~---------~~~i~leAsGGIt~~ni~~ya~t---GvD~Isvgs 272 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQ---------NPRVKIEASGNITLETIRAVAET---GVDYISSSA 272 (288)
T ss_pred CCCHHHHHHHHHHHHhc---------CCCeEEEEECCCCHHHHHHHHHc---CCCEEEEch
Confidence 67889999888877642 23577888999999999999863 568777743
No 88
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=54.73 E-value=7.5 Score=29.18 Aligned_cols=20 Identities=40% Similarity=0.885 Sum_probs=13.5
Q ss_pred cCCCceEEEeeeeeecCCCCCCCh
Q 046110 35 SNWDNVVLAYEPVWVIGTGKVAVP 58 (130)
Q Consensus 35 ~~~~~vvIAYEPvWAIGtG~~as~ 58 (130)
++++.++|.| |+|+ |.+|.|
T Consensus 72 ~~YD~I~lG~-PvW~---~~~~~p 91 (156)
T PF12682_consen 72 SDYDTIFLGT-PVWW---GTPPPP 91 (156)
T ss_dssp GG-SEEEEEE-EEET---TEE-CH
T ss_pred ccCCEEEEec-hHHc---CCCCHH
Confidence 4688999999 9994 445544
No 89
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.98 E-value=20 Score=28.03 Aligned_cols=42 Identities=2% Similarity=-0.120 Sum_probs=28.4
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
++|+++||.+.. +.+++++.. ..|++.+|.+-. .+|+.|.+|
T Consensus 71 ~~pv~~~GGI~s~~d~~~~l~~---G~~~v~ig~~~~-~~p~~~~~i 113 (243)
T cd04731 71 FIPLTVGGGIRSLEDARRLLRA---GADKVSINSAAV-ENPELIREI 113 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc---CCceEEECchhh-hChHHHHHH
Confidence 478999888874 678888753 357888855433 466666554
No 90
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=53.78 E-value=20 Score=27.69 Aligned_cols=31 Identities=3% Similarity=-0.113 Sum_probs=24.9
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++-+|-+ +++|+.+++.. . .||+++|.+
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~-G--adgV~vGsa 208 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALEL-G--ADAVVVGSA 208 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHC-C--CCEEEEchH
Confidence 4789998888 68999999874 3 589999654
No 91
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=53.64 E-value=29 Score=26.78 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=21.4
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++++|-+. ++.+++++. ...||+++|.+
T Consensus 189 ~ipvia~GGi~~~~di~~~~~---~Gadgv~ig~a 220 (230)
T TIGR00007 189 NVPVIASGGVSSIDDLIALKK---LGVYGVIVGKA 220 (230)
T ss_pred CCCEEEeCCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 47888866665 467777664 35699999443
No 92
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.09 E-value=30 Score=28.77 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
.++|++++++.+.+|+.- ...++.+.--|-+|++|++++.+. .+|.+-+
T Consensus 210 n~~~e~l~~~v~~l~~~~-------~~~~~~leaSGGI~~~ni~~yA~t---GvD~Is~ 258 (278)
T PRK08385 210 NMTPEEIREVIEALKREG-------LRERVKIEVSGGITPENIEEYAKL---DVDVISL 258 (278)
T ss_pred CCCHHHHHHHHHHHHhcC-------cCCCEEEEEECCCCHHHHHHHHHc---CCCEEEe
Confidence 357899988888876421 013567888999999999999864 5676655
No 93
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.46 E-value=29 Score=29.09 Aligned_cols=47 Identities=11% Similarity=-0.140 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
..+|++++++...+|.. ..++.+.--|.+|++|++++... .+|.+-+
T Consensus 227 nm~~e~vk~av~~~~~~---------~~~v~ieaSGGI~~~ni~~yA~t---GvD~Is~ 273 (289)
T PRK07896 227 NFPVWQTQEAVQRRDAR---------APTVLLESSGGLTLDTAAAYAET---GVDYLAV 273 (289)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHhc---CCCEEEe
Confidence 56788888888876642 23467888999999999999864 5675555
No 94
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.38 E-value=26 Score=28.20 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=22.1
Q ss_pred cCcEEEcCCCCc-ccHHHHHccc--CCC-cceEEEeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYY--YPN-LFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~--~~d-vdG~Lig~~ 116 (130)
++|++|+|-|.. +.+.++.... ... ++|+++|.|
T Consensus 188 ~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~A 225 (241)
T PRK14114 188 EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRA 225 (241)
T ss_pred CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehH
Confidence 579999888864 5566655421 113 799999554
No 95
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.10 E-value=25 Score=29.40 Aligned_cols=50 Identities=6% Similarity=-0.174 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeecccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
..+|++++++...+++ +..+.--|.+|++|++++.+. .||.+-+ +++-++
T Consensus 221 n~s~e~l~~av~~~~~------------~~~leaSGgI~~~ni~~yA~t---GVD~Is~--galths 270 (281)
T PRK06543 221 NFSLDDLREGVELVDG------------RAIVEASGNVNLNTVGAIAST---GVDVISV--GALTHS 270 (281)
T ss_pred CCCHHHHHHHHHHhCC------------CeEEEEECCCCHHHHHHHHhc---CCCEEEe--CccccC
Confidence 5788998888887752 235777999999999999864 5686666 444443
No 96
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=51.86 E-value=52 Score=26.83 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChh-hcCcCcEEEcCCCCcccHHHH
Q 046110 36 NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAE-VAASTRIIYRDTVINSTLQLN 100 (130)
Q Consensus 36 ~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~-~a~~irILYGGSV~~~N~~~l 100 (130)
.+.++.|-|-| ...+++.+.+..+.+.+.....-..+ .-..+|+.|||...|+++.=.
T Consensus 46 ~~~sllv~~d~-------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~IeIPV~Y~~~~GpDL~~va 104 (223)
T COG2049 46 GYRSLLVIYDP-------PRLDPQELLERLRALWEEIEALEAAGIRLIEIPVVYGGEYGPDLAEVA 104 (223)
T ss_pred cceeEEEEecc-------cccCHHHHHHHHHHHHhchhhhccccCCEEEEeeEeCCCCCCCHHHHH
Confidence 36778888865 24456666555555444332221111 334689999999998886543
No 97
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.75 E-value=24 Score=28.44 Aligned_cols=42 Identities=10% Similarity=-0.122 Sum_probs=33.0
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|+..|.| +++++.+++.. + .|++.+|.+-.. +|.-|..|
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~-G--Ad~V~igra~l~-~p~~~~~i 273 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMA-G--ASAVQVGTANFV-DPEAFKEI 273 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-C--CCEEEEchhhhc-ChHHHHHH
Confidence 4789997777 78999999963 4 489999888776 77766654
No 98
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=51.74 E-value=9.7 Score=31.96 Aligned_cols=41 Identities=2% Similarity=-0.077 Sum_probs=30.8
Q ss_pred cCcEEE-cCCCCcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIY-RDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILY-GGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
++|+++ ||-.+++.+.+.+. ..||++||.|.+. +|--|.+|
T Consensus 195 ~ipVi~NGdI~s~~da~~~l~----g~dgVMigRgal~-nP~if~~~ 236 (318)
T TIGR00742 195 HLTIEINGGIKNSEQIKQHLS----HVDGVMVGREAYE-NPYLLANV 236 (318)
T ss_pred CCcEEEECCcCCHHHHHHHHh----CCCEEEECHHHHh-CCHHHHHH
Confidence 478887 77778888888884 4699999988774 56656543
No 99
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=51.52 E-value=26 Score=29.21 Aligned_cols=52 Identities=8% Similarity=-0.138 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeecccc
Q 046110 57 VPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 57 s~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
+++++.++.+.++. . + ..++.|.--|.+|++|++++.+. + +| .+|.+|+-+.
T Consensus 227 ~~~~~~~~~~~l~~----~-g---~~~~~ieaSGgI~~~~i~~~a~~-g--vD--~isvGs~~~~ 278 (302)
T cd01571 227 FRYLIREVRWALDI----R-G---YKHVKIFVSGGLDEEDIKELEDV-G--VD--AFGVGTAISK 278 (302)
T ss_pred HHHHHHHHHHHHHh----C-C---CCCeEEEEeCCCCHHHHHHHHHc-C--CC--EEECCcccCC
Confidence 45556655555542 1 1 13578999999999999999875 3 56 4566776553
No 100
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=50.94 E-value=14 Score=28.28 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=22.7
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
.+|++-.|-+|++|+.+++....+ ||+=+
T Consensus 152 ~~PvilaGGI~~~Nv~~~i~~~~~--~gvdv 180 (203)
T cd00405 152 RKPVILAGGLTPDNVAEAIRLVRP--YGVDV 180 (203)
T ss_pred CCCEEEECCCChHHHHHHHHhcCC--CEEEc
Confidence 468999999999999999975324 65555
No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=49.64 E-value=25 Score=27.13 Aligned_cols=32 Identities=3% Similarity=-0.058 Sum_probs=25.5
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
++|++-+|.+ +++|+.+++.. + .||+++|.+-
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~-G--adgV~iGsai 205 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALEL-G--AHAVVVGGAI 205 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHC-C--CCEEEEchHh
Confidence 4789999999 69999999874 3 5899996553
No 102
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=49.45 E-value=26 Score=28.56 Aligned_cols=31 Identities=3% Similarity=-0.156 Sum_probs=18.3
Q ss_pred CcCcEEEcCCCCc-ccHHHHHcccCCCcceEEEee
Q 046110 82 ASTRIIYRDTVIN-STLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 82 ~~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~ 115 (130)
.+++++|||-+.. +.++++.+ .+. |-+.+|-
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~-aGA--D~IVvGn 212 (230)
T PF01884_consen 181 SDIPLIVGGGIRSPEQAREMAE-AGA--DTIVVGN 212 (230)
T ss_dssp SSSEEEEESS--SHHHHHHHHC-TTS--SEEEESC
T ss_pred CCccEEEeCCcCCHHHHHHHHH-CCC--CEEEECC
Confidence 3679999888765 45555543 344 6666643
No 103
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=48.60 E-value=54 Score=25.78 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccCh----hhcCcCcEEEcCCCCcccHHHHHcccCCCc
Q 046110 36 NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNA----EVAASTRIIYRDTVINSTLQLNIQYYYPNL 108 (130)
Q Consensus 36 ~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~----~~a~~irILYGGSV~~~N~~~l~~~~~~dv 108 (130)
.+..+.|-|.|.- -...+..+.|++.+.+.... ..--.+|+.|||++.+ |.+++.+..+.+.
T Consensus 48 ~~~sllV~fdp~~----------~~~~~l~~~l~~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~-DL~~vA~~~gls~ 113 (202)
T PF02682_consen 48 AYRSLLVHFDPLR----------IDRAALRAALEELLASPQPSEKPPSRLIEIPVCYDGEFGP-DLEEVAEHNGLSV 113 (202)
T ss_dssp ESSEEEEEESTTT----------SHHHHHHHHHHHHHCCCCSSCCCCEEEEEEEEEESTTTHT-THHHHHHHHTS-H
T ss_pred cccEEEEEEcCCc----------CCHHHHHHHHHHhhhhccccccCCCceEEEEEEECCCCCC-CHHHHHHHhCcCH
Confidence 3677888888732 13345566666666552211 1124689999999986 6777766544443
No 104
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=48.43 E-value=37 Score=28.35 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 54 KVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 54 ~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
...+|++++++.+.+++. ..++.+---|.||++|++++... .+|.+-+
T Consensus 216 Dn~~~e~l~~av~~~~~~---------~~~~~leaSGGI~~~ni~~yA~t---GvD~Is~ 263 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSL---------APHCTLSLAGGINLNTLKNYADC---GIRLFIT 263 (284)
T ss_pred CCCCHHHHHHHHHHhhcc---------CCCeEEEEECCCCHHHHHHHHhc---CCCEEEE
Confidence 467899999888876531 12467888999999999999874 5675544
No 105
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=47.99 E-value=35 Score=28.36 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
..+|+++.+..+.+|+. ..++.+---|-+|++|+.++.+. .+|.+-+
T Consensus 216 n~~~e~l~~~v~~l~~~---------~~~~~leasGGI~~~ni~~ya~~---GvD~is~ 262 (277)
T TIGR01334 216 KFTPQQLHHLHERLKFF---------DHIPTLAAAGGINPENIADYIEA---GIDLFIT 262 (277)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHhc---CCCEEEe
Confidence 57899999888888631 22456888999999999999864 4575554
No 106
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=47.52 E-value=18 Score=28.88 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=30.3
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|+.-|+| +++-+.+++.. + .||++||.+. +|--|.+|
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~-G--aD~VmiGR~~---~p~~~~~~ 231 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSY-G--ADMVSVARAS---LPENIEWL 231 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHc-C--CCEEEEcCCC---CchHHHHh
Confidence 5789995555 78889999873 3 6999998883 66677665
No 107
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.41 E-value=71 Score=24.53 Aligned_cols=59 Identities=14% Similarity=-0.008 Sum_probs=39.5
Q ss_pred EeeeeeecCCCCCCChHHHHHHH------------------HHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHccc
Q 046110 43 AYEPVWVIGTGKVAVPAQAQEVH------------------AELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYY 104 (130)
Q Consensus 43 AYEPvWAIGtG~~as~~~i~~v~------------------~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~ 104 (130)
++++-+.+| ..|+.++.++. ..+|+.... -.++|++==|-++++|+.++++.
T Consensus 103 ~~~~~~i~G---~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~------~~~ipvvaiGGI~~~n~~~~l~a- 172 (187)
T PRK07455 103 AQDIPIIPG---ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGP------LGHIPLIPTGGVTLENAQAFIQA- 172 (187)
T ss_pred HcCCCEEcC---cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhh------CCCCcEEEeCCCCHHHHHHHHHC-
Confidence 455556688 67888887766 334433221 12478999999999999999974
Q ss_pred CCCcceEEE
Q 046110 105 YPNLFIELT 113 (130)
Q Consensus 105 ~~dvdG~Li 113 (130)
+ .||+=+
T Consensus 173 G--a~~vav 179 (187)
T PRK07455 173 G--AIAVGL 179 (187)
T ss_pred C--CeEEEE
Confidence 3 465444
No 108
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.35 E-value=33 Score=28.97 Aligned_cols=50 Identities=6% Similarity=-0.191 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeecccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
.++|+++.++...++. ++.+---|.+|++|++++.+. .||.+-+ +++-+.
T Consensus 233 nmspe~l~~av~~~~~------------~~~lEaSGGIt~~ni~~yA~t---GVD~IS~--galths 282 (294)
T PRK06978 233 NFTLDMMREAVRVTAG------------RAVLEVSGGVNFDTVRAFAET---GVDRISI--GALTKD 282 (294)
T ss_pred CCCHHHHHHHHHhhcC------------CeEEEEECCCCHHHHHHHHhc---CCCEEEe--CccccC
Confidence 4688888887776642 356778999999999999864 5686666 444443
No 109
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=46.93 E-value=21 Score=30.00 Aligned_cols=41 Identities=2% Similarity=-0.099 Sum_probs=30.9
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFS 126 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~ 126 (130)
++|+++.|.+ +++.++++++. -..|++++|++.+ .||+-|.
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~--~~~D~V~~gR~~l-adP~l~~ 326 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAA--GHADMVGMTRAHI-ADPHLVA 326 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHc--CCCCeeeecHHhH-hCccHHH
Confidence 4789998876 77999999865 4569999988876 4555443
No 110
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=46.83 E-value=15 Score=31.29 Aligned_cols=29 Identities=34% Similarity=0.713 Sum_probs=22.8
Q ss_pred EEEeeeeeecCCCCCCChHHHHHHHHHHHH
Q 046110 41 VLAYEPVWVIGTGKVAVPAQAQEVHAELRK 70 (130)
Q Consensus 41 vIAYEPvWAIGtG~~as~~~i~~v~~~IR~ 70 (130)
+=||||.|-.= ..-.+|+++-++|..+|.
T Consensus 263 iGaYePrWfmK-~~HInPeEav~Ihkdv~a 291 (343)
T KOG3798|consen 263 IGAYEPRWFMK-SQHINPEEAVEIHKDVRA 291 (343)
T ss_pred ccccCchhhcc-cccCCHHHHHHHHHHHhh
Confidence 45899999654 345789999999998873
No 111
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=46.42 E-value=23 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHhcccc-CCCceEEEeeeee
Q 046110 16 KWRGLIDLGSVVETLCGKIS-NWDNVVLAYEPVW 48 (130)
Q Consensus 16 ~~~~~~~l~~Ql~~~l~~i~-~~~~vvIAYEPvW 48 (130)
--.+.+.|.++++..|.... ..-++.+.|+|.|
T Consensus 37 gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~W 70 (146)
T TIGR02159 37 GCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPW 70 (146)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCC
Confidence 34567788888888776542 2246788999999
No 112
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=46.36 E-value=34 Score=28.90 Aligned_cols=50 Identities=10% Similarity=-0.061 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeecccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
.++|++++++...++ .++.+.--|.+|.+|++++.+. .||.+-+ +++-+.
T Consensus 236 n~s~e~~~~av~~~~------------~~~~ieaSGGI~~~ni~~yA~t---GVD~Is~--galths 285 (296)
T PRK09016 236 NFTTEQMREAVKRTN------------GRALLEVSGNVTLETLREFAET---GVDFISV--GALTKH 285 (296)
T ss_pred CCChHHHHHHHHhhc------------CCeEEEEECCCCHHHHHHHHhc---CCCEEEe--CccccC
Confidence 356777777666543 1467888999999999999864 5675555 555444
No 113
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=46.06 E-value=53 Score=25.80 Aligned_cols=17 Identities=6% Similarity=-0.056 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHhccc
Q 046110 18 RGLIDLGSVVETLCGKI 34 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i 34 (130)
...+.+.+|++.+++..
T Consensus 50 ~~~~~~~~q~~~~~~d~ 66 (254)
T TIGR00097 50 IPPDFVEAQLDAVFSDI 66 (254)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 34566999999998753
No 114
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.97 E-value=45 Score=27.63 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=35.6
Q ss_pred eee--ecCCCCCC-ChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeec
Q 046110 46 PVW--VIGTGKVA-VPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 46 PvW--AIGtG~~a-s~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
|.| .||||... +++.++ .|++. .+++++.+|-+ +|+.+.+.+.. -.||++++.|=.
T Consensus 149 mPlg~pIGsg~Gi~~~~~I~----~I~e~----------~~vpVI~egGI~tpeda~~Amel---GAdgVlV~SAIt 208 (248)
T cd04728 149 MPLGSPIGSGQGLLNPYNLR----IIIER----------ADVPVIVDAGIGTPSDAAQAMEL---GADAVLLNTAIA 208 (248)
T ss_pred CCCCcCCCCCCCCCCHHHHH----HHHHh----------CCCcEEEeCCCCCHHHHHHHHHc---CCCEEEEChHhc
Confidence 663 39999876 444443 44432 14678886555 67888888864 459999965543
No 115
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.91 E-value=46 Score=27.29 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 57 VPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 57 s~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
++++++++.+.+++ ++++.=-|-+|++|+.++.+. .+||+-+
T Consensus 212 ~~e~l~~~~~~~~~------------~ipi~AiGGI~~~ni~~~a~~---Gvd~Iav 253 (268)
T cd01572 212 SPEELREAVALLKG------------RVLLEASGGITLENIRAYAET---GVDYISV 253 (268)
T ss_pred CHHHHHHHHHHcCC------------CCcEEEECCCCHHHHHHHHHc---CCCEEEE
Confidence 46776666655531 468888999999999999864 5687777
No 116
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.49 E-value=40 Score=26.88 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=34.5
Q ss_pred eeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeeecccc
Q 046110 44 YEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFSIRYQ 121 (130)
Q Consensus 44 YEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s~~~~ 121 (130)
|-.+=.-||..-++.+.++++.+. ..+|++++|-+. ++-++++++ ..+||+++ |++-++
T Consensus 167 ~tdi~~dGt~~G~~~~li~~l~~~--------------~~ipvi~~GGi~s~edi~~l~~---~G~~~viv--G~a~~~ 226 (234)
T PRK13587 167 YTDIAKDGKMSGPNFELTGQLVKA--------------TTIPVIASGGIRHQQDIQRLAS---LNVHAAII--GKAAHQ 226 (234)
T ss_pred EecccCcCCCCccCHHHHHHHHHh--------------CCCCEEEeCCCCCHHHHHHHHH---cCCCEEEE--hHHHHh
Confidence 444444566555555544433221 146888876665 467777764 45699999 554454
No 117
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=45.30 E-value=31 Score=27.32 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=32.5
Q ss_pred CCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChh---hcCcCcEEEcCCCCcccHHHHHcccCCC
Q 046110 36 NWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAE---VAASTRIIYRDTVINSTLQLNIQYYYPN 107 (130)
Q Consensus 36 ~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~---~a~~irILYGGSV~~~N~~~l~~~~~~d 107 (130)
.+..+.|-|.|. + ... +..+.+++...+..... .--.+|+.|||++.+ |.+++.+..+.+
T Consensus 41 ~~~sllv~fdp~-~-------~~~---~l~~~l~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~-DL~~vA~~~gLs 103 (202)
T TIGR00370 41 GMNNLTVFYDMY-E-------VYK---HLPQRLSSPWEEVKDYEVNRRIIEIPVCYGGEFGP-DLEEVAKINQLS 103 (202)
T ss_pred ccEEEEEEECch-h-------hHH---HHHHHHHHHHhhccccCCCCeEEEEeeEeCCCCCC-CHHHHHHHhCcC
Confidence 366788889883 1 122 23344544443221111 122589999999874 666666554433
No 118
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.98 E-value=51 Score=29.01 Aligned_cols=55 Identities=13% Similarity=-0.079 Sum_probs=37.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
|..+++...+.++.+.+|+.. -.++|+.||.--.-+.++++.. .+.+|-+.+|=|
T Consensus 70 s~~t~~~~~a~~~~~~~k~~~---------P~~~iV~GG~h~t~~~~~~l~~-~p~vD~Vv~GEG 124 (497)
T TIGR02026 70 TAITPAIYIACETLKFARERL---------PNAIIVLGGIHPTFMFHQVLTE-APWIDFIVRGEG 124 (497)
T ss_pred ecCcccHHHHHHHHHHHHHHC---------CCCEEEEcCCCcCcCHHHHHhc-CCCccEEEeCCc
Confidence 455666777777777777542 2468999998656677888753 356787777655
No 119
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.75 E-value=26 Score=29.14 Aligned_cols=41 Identities=5% Similarity=-0.101 Sum_probs=30.7
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFS 126 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~ 126 (130)
++||+.+|++ +++.+++++.. -..|.+.+|++.+ .||+-+.
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~--g~aD~V~lgR~~i-adP~~~~ 333 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALAS--GAVDGIGLARPLA-LEPDLPN 333 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc--CCCCeeeeChHhh-hCccHHH
Confidence 5799999999 68899999976 3468888877765 4555443
No 120
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=44.67 E-value=34 Score=24.29 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 58 PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 58 ~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
.+++.+.+..|++.|.+.++.......++.-.||+..+.+-. ...|+|-+++....
T Consensus 2 ~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~----~~sDiD~~v~~~~~ 57 (143)
T cd05400 2 LEEAKERYREIREALKESLSELAGRVAEVFLQGSYARGTALR----GDSDIDLVVVLPDD 57 (143)
T ss_pred HhHHHHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCC----CCCceeEEEEEcCc
Confidence 356788888888888887643211234677789988776533 13567756664443
No 121
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.55 E-value=46 Score=27.55 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
.++++++.++.+.++. . ..++.+.--|-++++|++++... .+|.+-+|
T Consensus 210 n~~~e~l~~~v~~~~~----~-----~~~~~ieAsGgIt~~ni~~ya~~---GvD~IsvG 257 (273)
T PRK05848 210 NMSVEEIKEVVAYRNA----N-----YPHVLLEASGNITLENINAYAKS---GVDAISSG 257 (273)
T ss_pred CCCHHHHHHHHHHhhc----c-----CCCeEEEEECCCCHHHHHHHHHc---CCCEEEeC
Confidence 4688888888876531 1 12456788888899999999864 56866663
No 122
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.26 E-value=25 Score=27.97 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=21.8
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|++++|-|.. +.+.++.+ ..+||+++|.+
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~---~g~~gvivg~a 213 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAE---IGFSGVIIGKA 213 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHH---CCCCEEEEEhh
Confidence 589999888863 45555543 56799999544
No 123
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=44.14 E-value=22 Score=31.79 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.8
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHH
Q 046110 48 WVIGTGKVAVPAQAQEVHAELRKWL 72 (130)
Q Consensus 48 WAIGtG~~as~~~i~~v~~~IR~~l 72 (130)
=|||||.-++++++..+.+.+++.-
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evt 255 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVT 255 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHh
Confidence 3899999999999999998888754
No 124
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.55 E-value=36 Score=27.77 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 56 AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 56 as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
.+++.+.++.+.+|+. .++++.=-|.+|++|+.++++. .+|++-+
T Consensus 210 ~~~e~l~~~v~~i~~~----------~~i~i~asGGIt~~ni~~~a~~---Gad~Isv 254 (269)
T cd01568 210 MSPEELKEAVKLLKGL----------PRVLLEASGGITLENIRAYAET---GVDVIST 254 (269)
T ss_pred CCHHHHHHHHHHhccC----------CCeEEEEECCCCHHHHHHHHHc---CCCEEEE
Confidence 4567777666665431 2467888999999999999864 4687766
No 125
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.38 E-value=36 Score=28.66 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
..+|+++.++...+++ ++.+.--|-+|++|++++.+. .||.+-+
T Consensus 225 nmspe~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~t---GVD~Is~ 268 (290)
T PRK06559 225 NMSLEQIEQAITLIAG------------RSRIECSGNIDMTTISRFRGL---AIDYVSS 268 (290)
T ss_pred CCCHHHHHHHHHHhcC------------ceEEEEECCCCHHHHHHHHhc---CCCEEEe
Confidence 4688888888876652 356777999999999999864 5686666
No 126
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=42.77 E-value=29 Score=27.64 Aligned_cols=41 Identities=0% Similarity=-0.176 Sum_probs=27.8
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeeecccccccccc
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSC 127 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~ 127 (130)
.+|+++||-|. .+.+++++.. ..|++.+|.+.. .+|+-|.+
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~~~---Ga~~vivgt~~~-~~p~~~~~ 115 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLLRA---GADKVSINTAAV-KNPELIYE 115 (254)
T ss_pred CCCEEEECCCCCHHHHHHHHHc---CCCEEEEChhHh-hChHHHHH
Confidence 47899988887 7778888763 458888855543 35554444
No 127
>PRK12616 pyridoxal kinase; Reviewed
Probab=42.15 E-value=39 Score=27.01 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHH
Q 046110 19 GLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRK 70 (130)
Q Consensus 19 ~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~ 70 (130)
-.+.+.+|++.+++++ |+=||=+|-.++.++++.+.+.+++
T Consensus 58 ~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~ 98 (270)
T PRK12616 58 DTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKE 98 (270)
T ss_pred CHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4567999999988764 2334445666666766666666654
No 128
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=41.78 E-value=71 Score=25.57 Aligned_cols=59 Identities=5% Similarity=-0.043 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeeccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRY 120 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~ 120 (130)
..+++++..+...+|.. ..+......++.|+..|.+|++|++++... . +|.+ |.|++-+
T Consensus 213 s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~Sggi~~~~i~~~~~~-g--vd~~--gvG~~~~ 271 (281)
T cd00516 213 SGSPEELDPAVLILKAR--AHLDGKGLPRVKIEASGGLDEENIRAYAET-G--VDVF--GVGTLLH 271 (281)
T ss_pred CCChHHHHHHHHHHHHH--HhhhhcCCCceEEEEeCCCCHHHHHHHHHc-C--CCEE--EeCcccc
Confidence 45567777777666531 111112234678999999999999999875 3 5633 5555433
No 129
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.03 E-value=29 Score=28.26 Aligned_cols=40 Identities=5% Similarity=-0.180 Sum_probs=29.3
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeeecccccccc
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFSIRYQGDVF 125 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F 125 (130)
+++|+.+|.++ ++++.+++... ..|.+.+|.+.+ .||+-+
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g--~aD~V~igR~~l-adP~l~ 321 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEG--KADLVALGRALL-ADPDLP 321 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCCeeeecHHHH-hCccHH
Confidence 47899988887 99999999753 358888876655 355433
No 130
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=40.67 E-value=25 Score=29.14 Aligned_cols=40 Identities=5% Similarity=-0.075 Sum_probs=29.3
Q ss_pred CcEEEcCCCCcccHHHHHcccCCCcceEEEeeeecccc-----ccccccc
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQ-----GDVFSCI 128 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~-----~~~F~~I 128 (130)
+++.|||-++.+.++++++. -+|=+.+ +|++.+ |+-+.++
T Consensus 84 ~~vqvGGGIR~e~i~~~l~~---Ga~rVii--gT~Av~~~~~~p~~v~~~ 128 (262)
T PLN02446 84 GGLQVGGGVNSENAMSYLDA---GASHVIV--TSYVFRDGQIDLERLKDL 128 (262)
T ss_pred CCEEEeCCccHHHHHHHHHc---CCCEEEE--chHHHhCCCCCHHHHHHH
Confidence 68999999999999999874 4577778 555443 5555444
No 131
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=40.32 E-value=25 Score=28.51 Aligned_cols=42 Identities=12% Similarity=-0.154 Sum_probs=32.5
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|+.-|.| +++.+.+++.. . .|.+.+|.+... +|+-|..|
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~a-G--Ad~V~igr~ll~-~P~~~~~i 276 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMA-G--ASAVQVGTANFY-DPYAFPKI 276 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-C--CCceeEcHHHhc-CcHHHHHH
Confidence 5799997777 89999999963 4 488999888775 77766554
No 132
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=40.23 E-value=1.3e+02 Score=25.15 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC--CChHHHHHHHHHHHHHHHhccChhhcCcCcE-EEcCCC
Q 046110 16 KWRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV--AVPAQAQEVHAELRKWLKDNVNAEVAASTRI-IYRDTV 92 (130)
Q Consensus 16 ~~~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~--as~~~i~~v~~~IR~~l~~~~~~~~a~~irI-LYGGSV 92 (130)
..+..+.|.++++..++... ..++---| +|.|.| .+++++.+++..|++.+... ..+.+ .-..++
T Consensus 29 ~~~y~~~L~~Ei~~~~~~~~-~~~v~~iy-----fGGGTPs~l~~~~l~~ll~~i~~~~~~~------~eitiE~nP~~~ 96 (350)
T PRK08446 29 KKEYMQALCLDLKFELEQFT-DEKIESVF-----IGGGTPSTVSAKFYEPIFEIISPYLSKD------CEITTEANPNSA 96 (350)
T ss_pred HHHHHHHHHHHHHHHHhhcc-CCceeEEE-----ECCCccccCCHHHHHHHHHHHHHhcCCC------ceEEEEeCCCCC
Confidence 35577788888876543321 12232234 676655 89999999999999873211 11111 336788
Q ss_pred CcccHHHHHcccCCCcceEEEeeeec
Q 046110 93 INSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 93 ~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+++.++.+.+. .+.-+-||+=|+
T Consensus 97 ~~e~l~~l~~~---GvnRiSiGvQS~ 119 (350)
T PRK08446 97 TKAWLKGMKNL---GVNRISFGVQSF 119 (350)
T ss_pred CHHHHHHHHHc---CCCEEEEecccC
Confidence 88888877653 445666766665
No 133
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.01 E-value=43 Score=27.96 Aligned_cols=44 Identities=9% Similarity=-0.072 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
.++|++++++...++. +.++---|.+|++|++++.+. .||.+-+
T Consensus 222 n~s~e~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~t---GVD~Is~ 265 (281)
T PRK06106 222 NMTPDTLREAVAIVAG------------RAITEASGRITPETAPAIAAS---GVDLISV 265 (281)
T ss_pred CCCHHHHHHHHHHhCC------------CceEEEECCCCHHHHHHHHhc---CCCEEEe
Confidence 4578888887776641 235777999999999999864 5675555
No 134
>PRK10586 putative oxidoreductase; Provisional
Probab=39.86 E-value=71 Score=27.13 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=27.4
Q ss_pred EEEcCCCCcccHHHHHcccCCCcceEE-Eeeeeccccccc
Q 046110 86 IIYRDTVINSTLQLNIQYYYPNLFIEL-TLAFSIRYQGDV 124 (130)
Q Consensus 86 ILYGGSV~~~N~~~l~~~~~~dvdG~L-ig~~s~~~~~~~ 124 (130)
+.|+|..+.+|+.++......+.|.++ |||||. .|...
T Consensus 65 ~~~~g~~~~~~v~~l~~~~~~~~d~iiavGGGs~-iD~aK 103 (362)
T PRK10586 65 ILFRGHCSESDVAQLAAASGDDRQVVIGVGGGAL-LDTAK 103 (362)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEecCcHH-HHHHH
Confidence 689999999999999765444557666 676664 55443
No 135
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=39.78 E-value=72 Score=27.07 Aligned_cols=16 Identities=0% Similarity=0.005 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHhccc
Q 046110 19 GLIDLGSVVETLCGKI 34 (130)
Q Consensus 19 ~~~~l~~Ql~~~l~~i 34 (130)
-.+.+.+|++.++..+
T Consensus 57 ~~~~i~~Ql~all~D~ 72 (321)
T PTZ00493 57 EEKFIVEQLDSIFADV 72 (321)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 3456899999988754
No 136
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.69 E-value=50 Score=26.40 Aligned_cols=29 Identities=10% Similarity=-0.111 Sum_probs=20.1
Q ss_pred cEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 85 RIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 85 rILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
+++|+|-|+. +.++++. ...+||+++|.|
T Consensus 191 ~viasGGv~s~~Dl~~l~---~~G~~gvivg~A 220 (232)
T PRK13586 191 LKEYAGGVSSDADLEYLK---NVGFDYIIVGMA 220 (232)
T ss_pred CEEEECCCCCHHHHHHHH---HCCCCEEEEehh
Confidence 4889888764 4555554 357899999655
No 137
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=39.25 E-value=22 Score=22.74 Aligned_cols=31 Identities=6% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 65 HAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 65 ~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
...+|+.+++..+ ...++.+++|+|.+=.++
T Consensus 22 V~~lK~~I~~~~~-i~~~~~~Li~~Gk~L~d~ 52 (71)
T cd01808 22 VKDFKEAVSKKFK-ANQEQLVLIFAGKILKDT 52 (71)
T ss_pred HHHHHHHHHHHhC-CCHHHEEEEECCeEcCCC
Confidence 4455555555554 346678999999987766
No 138
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=38.75 E-value=56 Score=27.74 Aligned_cols=32 Identities=6% Similarity=-0.149 Sum_probs=24.5
Q ss_pred cCcEE---EcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRII---YRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irIL---YGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
++|++ -||=-+|+|++.++.. ..||+++|.+-
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~---GAdgVaVGSaI 237 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQL---GADGVFVGSGI 237 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHh---CCCEEEEcHHh
Confidence 47875 4666699999999963 45999996654
No 139
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=38.45 E-value=29 Score=26.66 Aligned_cols=31 Identities=3% Similarity=-0.116 Sum_probs=24.3
Q ss_pred cCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.++++.+|-++. +|+.+++.. ..||+++|.+
T Consensus 172 ~~pvia~gGI~s~edi~~~~~~---Ga~gvivGsa 203 (217)
T cd00331 172 DVILVSESGISTPEDVKRLAEA---GADAVLIGES 203 (217)
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CCCEEEECHH
Confidence 468999888855 999999864 4589999655
No 140
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.86 E-value=26 Score=27.21 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=9.7
Q ss_pred CCceEEEeeeee
Q 046110 37 WDNVVLAYEPVW 48 (130)
Q Consensus 37 ~~~vvIAYEPvW 48 (130)
.+-++|||||.=
T Consensus 151 ~kAFIia~EPk~ 162 (179)
T COG4843 151 PKAFIIAYEPKT 162 (179)
T ss_pred CCcEEEEcCCcc
Confidence 467899999964
No 141
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=37.41 E-value=47 Score=21.36 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHH
Q 046110 64 VHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQ 98 (130)
Q Consensus 64 v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~ 98 (130)
..+.+|+.+.+..| -.++..+++|+|..-.++-.
T Consensus 21 TV~~lK~~I~~~~g-ip~~~q~Li~~Gk~L~D~~~ 54 (71)
T cd01796 21 ELENFKALCEAESG-IPASQQQLIYNGRELVDNKR 54 (71)
T ss_pred CHHHHHHHHHHHhC-CCHHHeEEEECCeEccCCcc
Confidence 34455566665554 23556799999998766533
No 142
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.08 E-value=60 Score=26.94 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeeccc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRY 120 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~ 120 (130)
..+++++.++.+.++ .++++.==|-+|++|++++... .+|++-+ +++-+
T Consensus 217 ~~~~e~l~~~v~~~~------------~~i~leAsGGIt~~ni~~~a~t---GvD~Isv--g~lt~ 265 (277)
T PRK05742 217 ELSLDDMREAVRLTA------------GRAKLEASGGINESTLRVIAET---GVDYISI--GAMTK 265 (277)
T ss_pred CCCHHHHHHHHHHhC------------CCCcEEEECCCCHHHHHHHHHc---CCCEEEE--Chhhc
Confidence 457777776665442 2467888889999999999863 5686666 44434
No 143
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=37.07 E-value=13 Score=22.00 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=15.7
Q ss_pred cCcCcEEEcCCCC------cccHHHHHcc
Q 046110 81 AASTRIIYRDTVI------NSTLQLNIQY 103 (130)
Q Consensus 81 a~~irILYGGSV~------~~N~~~l~~~ 103 (130)
...+-|.|||+|. ++-+++||..
T Consensus 5 ~~qLTIfY~G~V~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 5 TAQLTIFYGGQVCVFDDVPPDKAQEIMLL 33 (36)
T ss_pred CCcEEEEECCEEEEeCCCCHHHHHHHHHH
Confidence 3467899999864 4446676653
No 144
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=36.45 E-value=64 Score=26.48 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 56 AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 56 as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
..|+++.+..+.+|+. + .++++.==|-++++|+.++++. .+|++.+
T Consensus 212 ~~p~~l~~~~~~~~~~----~-----~~i~i~AsGGI~~~ni~~~~~~---Gvd~I~v 257 (272)
T cd01573 212 FSPEELAELVPKLRSL----A-----PPVLLAAAGGINIENAAAYAAA---GADILVT 257 (272)
T ss_pred CCHHHHHHHHHHHhcc----C-----CCceEEEECCCCHHHHHHHHHc---CCcEEEE
Confidence 3566666666555421 1 2467888888999999999864 5688844
No 145
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=36.41 E-value=96 Score=25.32 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=39.1
Q ss_pred cC-CCC--CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEc-CCCCcccHHHHHcc-cCCCcceEEEe
Q 046110 50 IG-TGK--VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYR-DTVINSTLQLNIQY-YYPNLFIELTL 114 (130)
Q Consensus 50 IG-tG~--~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYG-GSV~~~N~~~l~~~-~~~dvdG~Lig 114 (130)
-| ||. ..|.++-.++++..++.. +.+++|+.| |+.+.+.+.++.+. .+...||+++.
T Consensus 42 ~GstGE~~~Lt~eEr~~~~~~~~~~~--------~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 42 GGSTGENFMLSTEEKKEIFRIAKDEA--------KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred CCcccccccCCHHHHHHHHHHHHHHh--------CCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 56 454 567777777766666543 346889988 77777777777663 55677999883
No 146
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.21 E-value=2e+02 Score=22.94 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHhccccCCCceEEEeeeeeec-------------------CCCCCCChHHHHHHHHHHHHHHHhccChhhcCc
Q 046110 23 LGSVVETLCGKISNWDNVVLAYEPVWVI-------------------GTGKVAVPAQAQEVHAELRKWLKDNVNAEVAAS 83 (130)
Q Consensus 23 l~~Ql~~~l~~i~~~~~vvIAYEPvWAI-------------------GtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~ 83 (130)
+.++++..+..+. .+-++.|.|.|.= .++..+++.++.++...||+ .+
T Consensus 140 l~~~~~~~~~~~~--~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~-----------~~ 206 (264)
T cd01020 140 LAAKIAELSAKYK--GAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKN-----------RQ 206 (264)
T ss_pred HHHHHHHHHhhCC--CCeEEEeCchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHh-----------CC
Confidence 3444444444332 2346778887731 24888999999999999985 24
Q ss_pred CcEE-EcCCCCcccHHHH
Q 046110 84 TRII-YRDTVINSTLQLN 100 (130)
Q Consensus 84 irIL-YGGSV~~~N~~~l 100 (130)
++++ |-=++++..++.+
T Consensus 207 v~~if~e~~~~~k~~~~l 224 (264)
T cd01020 207 IDALIVNPQQASSATTNI 224 (264)
T ss_pred CCEEEeCCCCCcHHHHHH
Confidence 5555 4555555555534
No 147
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=35.44 E-value=20 Score=23.28 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=10.9
Q ss_pred CCceEEEeeeeee
Q 046110 37 WDNVVLAYEPVWV 49 (130)
Q Consensus 37 ~~~vvIAYEPvWA 49 (130)
..|++|.|||-..
T Consensus 14 DpRL~ISYEP~~~ 26 (55)
T PF11918_consen 14 DPRLVISYEPSYV 26 (55)
T ss_pred CCCeEEEeCCCCC
Confidence 4789999999774
No 148
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.43 E-value=71 Score=25.42 Aligned_cols=32 Identities=6% Similarity=-0.099 Sum_probs=22.8
Q ss_pred cCcEEE-cCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIY-RDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILY-GGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|+++ ||--+++.+.++++. -++||+++|.+
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~--g~~dgv~~g~a 231 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTK--GKADAALAASV 231 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc--CCcceeeEhHH
Confidence 468887 555566788888875 34799999555
No 149
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=35.38 E-value=79 Score=23.66 Aligned_cols=30 Identities=3% Similarity=-0.154 Sum_probs=23.2
Q ss_pred CcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|+=-|.++++|+.++++. ..||+.+|.+
T Consensus 161 ~~v~a~GGI~~~~i~~~~~~---Ga~gv~~gs~ 190 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLEA---GADGVAVVSA 190 (212)
T ss_pred CCEEEECCcCHHHHHHHHHc---CCCEEEEeHH
Confidence 67777888899999999874 3477777543
No 150
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=35.36 E-value=1.2e+02 Score=22.78 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=21.0
Q ss_pred CcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
++|.==|.++++|+.++++. ..|++.+|.+
T Consensus 159 ~~i~v~GGI~~~n~~~~~~~---Ga~~v~vGsa 188 (206)
T TIGR03128 159 ARVAVAGGINLDTIPDVIKL---GPDIVIVGGA 188 (206)
T ss_pred CcEEEECCcCHHHHHHHHHc---CCCEEEEeeh
Confidence 34542366799999999863 4578888655
No 151
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=34.49 E-value=6.8 Score=18.85 Aligned_cols=7 Identities=43% Similarity=1.417 Sum_probs=4.8
Q ss_pred eeeecCC
Q 046110 46 PVWVIGT 52 (130)
Q Consensus 46 PvWAIGt 52 (130)
|.||+|.
T Consensus 2 ~~WAvGh 8 (14)
T PF02044_consen 2 PQWAVGH 8 (14)
T ss_dssp -TCHHHC
T ss_pred Cccceee
Confidence 6799884
No 152
>PRK07116 flavodoxin; Provisional
Probab=34.00 E-value=1.1e+02 Score=22.53 Aligned_cols=15 Identities=33% Similarity=1.059 Sum_probs=11.7
Q ss_pred ccCCCceEEEeeeeee
Q 046110 34 ISNWDNVVLAYEPVWV 49 (130)
Q Consensus 34 i~~~~~vvIAYEPvWA 49 (130)
+...+.++|.| |+|.
T Consensus 74 l~~~D~Iiig~-Pv~~ 88 (160)
T PRK07116 74 IAEYDVIFLGF-PIWW 88 (160)
T ss_pred HHhCCEEEEEC-Chhc
Confidence 34567899999 9995
No 153
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.67 E-value=77 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=35.4
Q ss_pred cC-CCCCCC-hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEEEee
Q 046110 50 IG-TGKVAV-PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 50 IG-tG~~as-~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~ 115 (130)
-| ||..-. .+.+.+.++.+|++- .+|+++|=.|+ ++-++++.+. -||+.+|-
T Consensus 180 ~GvTG~~~~~~~~~~~~v~~vr~~~----------~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGS 234 (265)
T COG0159 180 MGVTGARNPVSADVKELVKRVRKYT----------DVPVLVGFGISSPEQAAQVAEA----ADGVIVGS 234 (265)
T ss_pred ccccCCCcccchhHHHHHHHHHHhc----------CCCeEEecCcCCHHHHHHHHHh----CCeEEEcH
Confidence 45 565433 444777777777642 57999997775 5777777764 38999943
No 154
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.60 E-value=53 Score=25.99 Aligned_cols=42 Identities=2% Similarity=-0.160 Sum_probs=28.1
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
++|++.||-+. .+.+++++.. ..|++.+|.+.. .+|+.|.+|
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~~---Ga~~Viigt~~l-~~p~~~~ei 116 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLRA---GADKVSINSAAV-ANPELISEA 116 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHHc---CCCEEEEChhHh-hCcHHHHHH
Confidence 47888866665 7888888763 458888865443 466666554
No 155
>PRK06934 flavodoxin; Provisional
Probab=33.47 E-value=21 Score=28.75 Aligned_cols=17 Identities=24% Similarity=1.019 Sum_probs=13.5
Q ss_pred ccccCCCceEEEeeeeee
Q 046110 32 GKISNWDNVVLAYEPVWV 49 (130)
Q Consensus 32 ~~i~~~~~vvIAYEPvWA 49 (130)
..+++++.++|.| |+|+
T Consensus 125 ~dl~~YD~I~IG~-PIWw 141 (221)
T PRK06934 125 QNLADYDQIFIGY-PIWW 141 (221)
T ss_pred HhHHhCCEEEEEc-chhh
Confidence 4445688999999 9995
No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=33.12 E-value=1.5e+02 Score=21.41 Aligned_cols=31 Identities=0% Similarity=-0.166 Sum_probs=23.5
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.++++=-|.++++|+.+++.. ..||+.+|.+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~~---Ga~~i~~g~~ 180 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLAA---GADGVAVISA 180 (196)
T ss_pred CCCEEEECCCCHHHHHHHHHc---CCCEEEEehH
Confidence 367777788899999999874 3488887544
No 157
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=33.08 E-value=40 Score=22.18 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 65 HAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 65 ~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
...+|+.+++..+ ...++.|++|+|.+-.++
T Consensus 24 V~~LK~~I~~~~~-~~~~~qrLi~~Gk~L~D~ 54 (73)
T cd01791 24 IGDLKKLIAAQTG-TRPEKIVLKKWYTIFKDH 54 (73)
T ss_pred HHHHHHHHHHHhC-CChHHEEEEeCCcCCCCC
Confidence 3344444544433 346678999999987765
No 158
>PRK01060 endonuclease IV; Provisional
Probab=32.99 E-value=1.3e+02 Score=23.68 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHH
Q 046110 21 IDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAEL 68 (130)
Q Consensus 21 ~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~I 68 (130)
+.+.+.++.+++ ....+.|+.||.|.-++....+++++.++.+.+
T Consensus 124 ~~~~e~l~~l~~---~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~~v 168 (281)
T PRK01060 124 ARIAESLNEALD---KTQGVTIVLENTAGQGSELGRRFEELARIIDGV 168 (281)
T ss_pred HHHHHHHHHHHh---cCCCCEEEEecCCCCCCcccCCHHHHHHHHHhc
Confidence 334444444433 224589999999866654556777777666555
No 159
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.94 E-value=88 Score=24.73 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=22.0
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.+|+++.|-|+ .+-+.++++. ..+||+++|.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~--~G~~gvivg~a 229 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTE--GGADAALAASI 229 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHh--CCccEEeEhHH
Confidence 47899977665 4667776654 35689999544
No 160
>PF03876 SHS2_Rpb7-N: SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397; InterPro: IPR005576 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable []. This entry represents the N-terminal, heterodimerisation domain of RPB7.; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2C35_F 3HKZ_E 2PMZ_T 2CKZ_D 2Y0S_E 2RF4_A 2JA7_G 1Y1V_G 2JA5_G 4A3D_G ....
Probab=32.60 E-value=97 Score=19.53 Aligned_cols=49 Identities=22% Similarity=0.095 Sum_probs=31.3
Q ss_pred cceeEEEEehhh--hHHHHHHHHHHHh-ccccCCCceEEEeeeeeecCCCCC
Q 046110 7 EDVILLILVKWR--GLIDLGSVVETLC-GKISNWDNVVLAYEPVWVIGTGKV 55 (130)
Q Consensus 7 ~~~~~~~~~~~~--~~~~l~~Ql~~~l-~~i~~~~~vvIAYEPvWAIGtG~~ 55 (130)
|+.++|-|.... -++.+.+||..-. ....+.--++|||.-+=-++.|+.
T Consensus 1 e~~v~l~P~~l~~~~~~~i~~~L~~~~~~k~~~~~G~~i~v~~i~~~~~g~I 52 (70)
T PF03876_consen 1 EDTVRLPPSYLGPDLKDGIKEQLLDKYEGKYIPELGVVIAVTDIKEISEGKI 52 (70)
T ss_dssp EEEEEE-GGGTTSTHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEESCEEE
T ss_pred CcEEEECHHHhCcCHHHHHHHHHHHHHhCcCcCCceEEEEEeeeeEecCcEE
Confidence 567888886655 5667778884444 333322268999988877776554
No 161
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=32 Score=29.19 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHhcc-ccCCCceEEEeeeeeecCCCCCC---------------ChHHHHHHHHHHHHHHHhccChh
Q 046110 16 KWRGLIDLGSVVETLCGK-ISNWDNVVLAYEPVWVIGTGKVA---------------VPAQAQEVHAELRKWLKDNVNAE 79 (130)
Q Consensus 16 ~~~~~~~l~~Ql~~~l~~-i~~~~~vvIAYEPvWAIGtG~~a---------------s~~~i~~v~~~IR~~l~~~~~~~ 79 (130)
--+||..|.-+|+.-+++ |=..+.+- -| +--.|||+++. +|.+.-.+..+.+........-.
T Consensus 12 TAsGKT~lai~LAk~~~~eIIs~DSmQ-vY-r~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~~~i~~i~ 89 (308)
T COG0324 12 TASGKTALAIALAKRLGGEIISLDSMQ-VY-RGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDALAAIDDIL 89 (308)
T ss_pred CCcCHHHHHHHHHHHcCCcEEecchhh-hc-CCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHHHHHHHHH
Confidence 345677777788777664 21112221 25 45679998862 23333344444444444333223
Q ss_pred hcCcCcEEEcCCCC
Q 046110 80 VAASTRIIYRDTVI 93 (130)
Q Consensus 80 ~a~~irILYGGSV~ 93 (130)
...++|||=|||.-
T Consensus 90 ~rgk~pIlVGGTgl 103 (308)
T COG0324 90 ARGKLPILVGGTGL 103 (308)
T ss_pred hCCCCcEEEccHHH
Confidence 34579999999864
No 162
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.35 E-value=1.7e+02 Score=20.08 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIEL 112 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~L 112 (130)
..+.+.+.+..+.+|+.- ..+++|+.||..-..+.+ .+.. ..+|+++
T Consensus 61 ~~~~~~~~~~i~~l~~~~--------~~~~~i~vGG~~~~~~~~-~~~~--~G~D~~~ 107 (119)
T cd02067 61 TTHMTLMKEVIEELKEAG--------LDDIPVLVGGAIVTRDFK-FLKE--IGVDAYF 107 (119)
T ss_pred cccHHHHHHHHHHHHHcC--------CCCCeEEEECCCCChhHH-HHHH--cCCeEEE
Confidence 455667777777776531 125889999998766554 4443 3457443
No 163
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=32.23 E-value=85 Score=23.42 Aligned_cols=30 Identities=3% Similarity=-0.198 Sum_probs=22.9
Q ss_pred CcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
+|++=.|-++++|++++++. ..||+-+|.+
T Consensus 153 ~pv~a~GGI~~~~~~~~~~~---G~~gva~~~~ 182 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVLAA---GADGVAVVSA 182 (196)
T ss_pred CCEEEECCcCHHHHHHHHHc---CCCEEEEhHH
Confidence 67777888899999999864 4477777433
No 164
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=32.23 E-value=2.6e+02 Score=23.30 Aligned_cols=88 Identities=6% Similarity=-0.099 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC--CChHHHHHHHHHHHHHHHhccChhhcCcCcE-EEcCCCCc
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV--AVPAQAQEVHAELRKWLKDNVNAEVAASTRI-IYRDTVIN 94 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~--as~~~i~~v~~~IR~~l~~~~~~~~a~~irI-LYGGSV~~ 94 (130)
+..+.+.+++...++... ..++--.| +|.|.| .+++++.++...|++.+.-.. ...+.+ .-+++++.
T Consensus 31 ~y~~~l~~Ei~~~~~~~~-~~~v~~i~-----~GGGtPs~l~~~~l~~ll~~i~~~~~~~~----~~eitie~np~~lt~ 100 (360)
T TIGR00539 31 EYTQALCQDLKHALSQTD-QEPLESIF-----IGGGTPNTLSVEAFERLFESIYQHASLSD----DCEITTEANPELITA 100 (360)
T ss_pred HHHHHHHHHHHHHHHhcC-CCcccEEE-----eCCCchhcCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCCCCH
Confidence 355666666665443321 11222224 676665 568999999999987653111 122333 45788998
Q ss_pred ccHHHHHcccCCCcceEEEeeeec
Q 046110 95 STLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 95 ~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+.++.+.+. .+..+-+|.=|+
T Consensus 101 e~l~~l~~~---Gv~risiGvqS~ 121 (360)
T TIGR00539 101 EWCKGLKGA---GINRLSLGVQSF 121 (360)
T ss_pred HHHHHHHHc---CCCEEEEecccC
Confidence 888887653 356677776665
No 165
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.16 E-value=55 Score=27.50 Aligned_cols=41 Identities=7% Similarity=-0.131 Sum_probs=30.7
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEeeeeccccccccc
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFS 126 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~ 126 (130)
++|++--|.++++.+++++.. -..|.+.+|++.+ .||+-+.
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~--g~~D~V~~gR~~l-adP~~~~ 325 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALAD--GKADLVAFGRPFI-ANPDLVE 325 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHc--CCCCEEEeCHhhh-hCcCHHH
Confidence 478888888999999999975 3458888877765 4555443
No 166
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=32.16 E-value=1.2e+02 Score=22.47 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHc
Q 046110 58 PAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQ 102 (130)
Q Consensus 58 ~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~ 102 (130)
..+.+++.+.+++.+.+.++......++++++-+.+..|+.+|+.
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~ 180 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLE 180 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHH
Confidence 677788888888666544432211368999999999999999975
No 167
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=31.97 E-value=81 Score=28.05 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEee
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~ 115 (130)
|...++-+.......+|+.+.+. | -++++|+++|+.+.+-+.+|... +.-+|+.=||.
T Consensus 260 gVRlDSGDl~~l~~~vr~~ld~~-G---~~~~kIi~S~gLde~~i~~l~~~-g~~id~fGvGt 317 (464)
T PRK09243 260 GVRIDSGDLAYLSKKVRKMLDEA-G---FTDTKIVASNDLDEYTIASLKLQ-GAPIDGFGVGT 317 (464)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHC-C---CCCcEEEEeCCCCHHHHHHHHhC-CCCceEEEcCc
Confidence 55666666677778888888765 3 34689999999999999999743 44456554433
No 168
>PRK12412 pyridoxal kinase; Reviewed
Probab=31.77 E-value=78 Score=25.21 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=29.5
Q ss_pred eeEEEEehhhhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHH
Q 046110 9 VILLILVKWRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRK 70 (130)
Q Consensus 9 ~~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~ 70 (130)
+....|+ ..+.+.+|++.+++++ |+=+|=+|...+.+.++.+.+.+++
T Consensus 49 ~~~v~~~---~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~ 96 (268)
T PRK12412 49 AHNVFPI---PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEK 96 (268)
T ss_pred EEEEEeC---CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4455565 4566999999998864 2222334555566666666666654
No 169
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=31.10 E-value=45 Score=22.67 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHc
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQ 102 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~ 102 (130)
.++.+.|.++-+.|.+...+ +-...++.|++|+|.+-.++ ..|-.
T Consensus 17 ~~~~~TV~~LK~kI~~~~~e--gi~~~dqQrLIy~GKiL~D~-~TL~d 61 (75)
T cd01815 17 SPGGYQVSTLKQLIAAQLPD--SLPDPELIDLIHCGRKLKDD-QTLDF 61 (75)
T ss_pred CCccCcHHHHHHHHHHhhcc--CCCChHHeEEEeCCcCCCCC-CcHHH
Confidence 34555555444444433210 11125567999999997555 55544
No 170
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=30.74 E-value=45 Score=27.64 Aligned_cols=38 Identities=3% Similarity=-0.228 Sum_probs=28.2
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeecccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGD 123 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~ 123 (130)
++||+-+|++ +++.+++++... .+|.+.+|.+-. .||+
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g--~aD~V~~gR~~i-~dP~ 328 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESG--RADLVALGRELL-RNPY 328 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCCeehhhHHHH-hCcc
Confidence 5789998888 889999999753 358888876655 3443
No 171
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=30.72 E-value=44 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccC-hhhcCcCcEEEcCCCCcccHHHHH
Q 046110 64 VHAELRKWLKDNVN-AEVAASTRIIYRDTVINSTLQLNI 101 (130)
Q Consensus 64 v~~~IR~~l~~~~~-~~~a~~irILYGGSV~~~N~~~l~ 101 (130)
....+|+.+++..+ .....+.|++|.|-|=.+. ..|-
T Consensus 25 TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~-~tL~ 62 (79)
T cd01790 25 TVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDH-LKLR 62 (79)
T ss_pred hHHHHHHHHHHhcCCCCChhHeEEEEcCeeccch-hhHH
Confidence 44555666665543 1235678999999997544 4443
No 172
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=30.38 E-value=14 Score=24.18 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcc
Q 046110 66 AELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQY 103 (130)
Q Consensus 66 ~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~ 103 (130)
..+|+.+....| ..+++.+++|+|.+-.++ ..|-.+
T Consensus 21 ~~lK~~i~~~~g-ip~~~q~L~~~G~~L~d~-~tL~~~ 56 (76)
T cd01800 21 SVLKVKIHEETG-MPAGKQKLQYEGIFIKDS-NSLAYY 56 (76)
T ss_pred HHHHHHHHHHHC-CCHHHEEEEECCEEcCCC-CcHHHc
Confidence 334444444433 345677999999876554 555443
No 173
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=30.29 E-value=46 Score=28.28 Aligned_cols=42 Identities=10% Similarity=-0.122 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 57 VPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 57 s~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
+|+++.++...++ .+.++---|.+|++|+.++.+. .||.+-+
T Consensus 248 ~~e~l~~av~~~~------------~~~~lEaSGGIt~~ni~~yA~t---GVD~Is~ 289 (308)
T PLN02716 248 DVSMLKEAVELIN------------GRFETEASGNVTLDTVHKIGQT---GVTYISS 289 (308)
T ss_pred CHHHHHHHHHhhC------------CCceEEEECCCCHHHHHHHHHc---CCCEEEe
Confidence 5556555555443 2345888999999999999864 5686666
No 174
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.29 E-value=86 Score=26.04 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=35.8
Q ss_pred eee--ecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeec
Q 046110 46 PVW--VIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 46 PvW--AIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
|.| -||||...+..+. ++.|++. .+++++-+|-+ +|+.+.+-+.. -.||+|++.|=.
T Consensus 149 mPlg~pIGsg~gi~~~~~---i~~i~e~----------~~vpVIveaGI~tpeda~~Amel---GAdgVlV~SAIt 208 (250)
T PRK00208 149 MPLGAPIGSGLGLLNPYN---LRIIIEQ----------ADVPVIVDAGIGTPSDAAQAMEL---GADAVLLNTAIA 208 (250)
T ss_pred CCCCcCCCCCCCCCCHHH---HHHHHHh----------cCCeEEEeCCCCCHHHHHHHHHc---CCCEEEEChHhh
Confidence 664 3999987644222 4444432 13677775555 67888888864 459999965543
No 175
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=30.21 E-value=1.1e+02 Score=25.37 Aligned_cols=34 Identities=9% Similarity=-0.166 Sum_probs=22.6
Q ss_pred CcCcEEEcCCCC-cccHHHHHcccCCCcceEEEeee
Q 046110 82 ASTRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 82 ~~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
.++|++|.|-|+ .+.+.+|.+.. .+++|+.+|.|
T Consensus 206 ~~ipVIASGGv~sleDi~~L~~~g-~g~~gvIvGkA 240 (262)
T PLN02446 206 SPIPVTYAGGVRSLDDLERVKVAG-GGRVDVTVGSA 240 (262)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcC-CCCEEEEEEee
Confidence 357999966554 45566665432 36799999776
No 176
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=30.20 E-value=42 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.518 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccChhhcCcCcEEEcCCCC
Q 046110 65 HAELRKWLKDNVNAEVAASTRIIYRDTVI 93 (130)
Q Consensus 65 ~~~IR~~l~~~~~~~~a~~irILYGGSV~ 93 (130)
...||+.+++ -||+|||-..
T Consensus 265 lCvirnlird---------~rivYgGGaa 284 (400)
T KOG0357|consen 265 LCVIRNLIRD---------NRVVYGGGAA 284 (400)
T ss_pred HHHHHHHhhc---------CeeEecCchH
Confidence 3455666554 3899988643
No 177
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=29.46 E-value=1.1e+02 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 56 AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 56 as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
++++.++++.+-|++...+. .++|+ ||.++..|
T Consensus 96 p~~e~l~~i~~Gi~~a~~~~-------gi~iv-GGdt~~~~ 128 (283)
T cd02192 96 PSAEAAAQVLEGMRDAAEKF-------GVPIV-GGHTHPDS 128 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHc-------CCcEe-cccCCCCC
Confidence 36788999999998877643 46776 88887544
No 178
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.45 E-value=1.1e+02 Score=25.71 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=35.7
Q ss_pred ceEEEeeeeee----cCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCC-cccHHHHHcccCCCcceEE
Q 046110 39 NVVLAYEPVWV----IGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVI-NSTLQLNIQYYYPNLFIEL 112 (130)
Q Consensus 39 ~vvIAYEPvWA----IGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~-~~N~~~l~~~~~~dvdG~L 112 (130)
.++++. .=|- ||.....|.++..+..+.|.+...+. ..+.+.+.|||-++ |+.+..+++... +++|++
T Consensus 172 Diiv~H-~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v----~~dii~l~hGGPI~~p~D~~~~l~~t~-~~~Gf~ 244 (268)
T PF09370_consen 172 DIIVAH-MGLTTGGSIGAKTALSLEEAAERIQEIFDAARAV----NPDIIVLCHGGPIATPEDAQYVLRNTK-GIHGFI 244 (268)
T ss_dssp SEEEEE--SS----------S--HHHHHHHHHHHHHHHHCC-----TT-EEEEECTTB-SHHHHHHHHHH-T-TEEEEE
T ss_pred CEEEec-CCccCCCCcCccccCCHHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCCHHHHHHHHhcCC-CCCEEe
Confidence 356655 2232 33345667777777777776655443 24567899999874 677888877533 245443
No 179
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=29.25 E-value=1e+02 Score=25.34 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=35.7
Q ss_pred cC-CCCC-CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCc-ccHHHHHcccCCCcceEEEeee
Q 046110 50 IG-TGKV-AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVIN-STLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 50 IG-tG~~-as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~-~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
-| ||.. .-++++.+.++.+|+.. +.|+.-|=-++. +.++++.. ..||+.||-+
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~----------~~Pv~vGFGI~~~e~~~~~~~----~aDGvIVGSa 228 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHT----------DLPVAVGFGISTPEQAKKLAA----GADGVIVGSA 228 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTT----------SS-EEEESSS-SHHHHHHHHT----TSSEEEESHH
T ss_pred CCCCCCcccchHHHHHHHHHHHhhc----------CcceEEecCCCCHHHHHHHHc----cCCEEEECHH
Confidence 56 6665 34677888888888642 578999988765 56777762 3499999543
No 180
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=29.24 E-value=86 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHH
Q 046110 19 GLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKW 71 (130)
Q Consensus 19 ~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~ 71 (130)
..+.++.|+++++..+. +=|+=+|.-++++-++.+.+.++++
T Consensus 56 ~~~~v~~Ql~av~~D~~-----------v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 56 PPEFVEAQLDAVFSDIP-----------VDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred CHHHHHHHHHHHhhcCC-----------CCEEEECCcCCHHHHHHHHHHHHhc
Confidence 35679999999988653 2234567777888877777777764
No 181
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=29.13 E-value=1.2e+02 Score=24.83 Aligned_cols=54 Identities=9% Similarity=-0.144 Sum_probs=39.5
Q ss_pred eeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEee
Q 046110 46 PVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLA 115 (130)
Q Consensus 46 PvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~ 115 (130)
|+-|.||-.-++++-+..+.... .-+++-||-|.+.---+++.. .-++|+|++.
T Consensus 158 Di~aVGt~~G~~~E~l~~~~~~s--------------~~pVllGGGV~g~Edlel~~~--~Gv~gvLvaT 211 (229)
T COG1411 158 DIGAVGTKSGPDYELLTKVLELS--------------EHPVLLGGGVGGMEDLELLLG--MGVSGVLVAT 211 (229)
T ss_pred EccccccccCCCHHHHHHHHHhc--------------cCceeecCCcCcHHHHHHHhc--CCCceeeehh
Confidence 88999998878887765443322 126888999998877777654 6779999943
No 182
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=29.04 E-value=55 Score=24.12 Aligned_cols=39 Identities=5% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhccCh------hhcCcCcEEEcCCCCcccHHHHHcc
Q 046110 64 VHAELRKWLKDNVNA------EVAASTRIIYRDTVINSTLQLNIQY 103 (130)
Q Consensus 64 v~~~IR~~l~~~~~~------~~a~~irILYGGSV~~~N~~~l~~~ 103 (130)
....+++.+.+..+. ...+..++||.|-+=.++ ..|-.+
T Consensus 27 TV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~-~TL~d~ 71 (113)
T cd01814 27 TVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENS-KTVGEC 71 (113)
T ss_pred HHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCC-CcHHHh
Confidence 444555555443321 346678999999987654 555544
No 183
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.87 E-value=1.8e+02 Score=25.08 Aligned_cols=58 Identities=16% Similarity=0.041 Sum_probs=39.3
Q ss_pred EEeee-eeecCCCCCC-ChHHHHHHHHHHHHHHHhccChhhcCcCcEEEc-CCCCcccHHHHHcccCCCcceEEEeeeec
Q 046110 42 LAYEP-VWVIGTGKVA-VPAQAQEVHAELRKWLKDNVNAEVAASTRIIYR-DTVINSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 42 IAYEP-vWAIGtG~~a-s~~~i~~v~~~IR~~l~~~~~~~~a~~irILYG-GSV~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+|+|| -=-||||... +|+.++.+.+. ..++++-| |==+++.+..-|.. +. ||+|+ +|.
T Consensus 220 ~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------~~vpVivdAGIg~~sda~~Amel-Ga--dgVL~--nSa 280 (326)
T PRK11840 220 VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------ATVPVLVDAGVGTASDAAVAMEL-GC--DGVLM--NTA 280 (326)
T ss_pred EEEeeccccccCCCCCCCHHHHHHHHHc--------------CCCcEEEeCCCCCHHHHHHHHHc-CC--CEEEE--cce
Confidence 79999 7889999886 55555544433 13677765 55567778877764 33 88888 554
No 184
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=28.10 E-value=1.2e+02 Score=24.54 Aligned_cols=42 Identities=14% Similarity=-0.084 Sum_probs=30.5
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFSCI 128 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~~I 128 (130)
+++|+.-|.| +++.+.+++.. + .|++++|.+-+ .+|+-|.+|
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~-G--Ad~V~igr~~l-~~p~~~~~i 276 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMA-G--ASAVQVGTAVY-YRGFAFKKI 276 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-C--CCceeecHHHh-cCchHHHHH
Confidence 4789985554 89999999963 4 58999977765 467666554
No 185
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=28.08 E-value=83 Score=22.40 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=27.9
Q ss_pred CCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEE
Q 046110 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRII 87 (130)
Q Consensus 37 ~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irIL 87 (130)
..++++.+ | -||..++.+.++.+|+.+.++||-.--..++++
T Consensus 63 HanfivN~--------g-~Ata~dv~~Li~~v~~~V~~~~Gi~Le~Ev~~i 104 (105)
T PF02873_consen 63 HANFIVNH--------G-GATAADVLALIEEVRERVKEKFGIELEPEVRII 104 (105)
T ss_dssp STTEEEE---------S-S--HHHHHHHHHHHHHHHHHHHS--B-BSSEEE
T ss_pred hCCeEEEC--------C-CCCHHHHHHHHHHHHHHHHHHHCCeeeeccEEe
Confidence 45777765 2 689999999999999999999875444444443
No 186
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=27.67 E-value=75 Score=23.13 Aligned_cols=19 Identities=26% Similarity=0.088 Sum_probs=14.5
Q ss_pred ccccccceeEEEEehhhhH
Q 046110 2 LFEFREDVILLILVKWRGL 20 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (130)
+.+..+|++.|||.-.+..
T Consensus 26 f~~~~~Gdi~LT~~G~~f~ 44 (120)
T PF09821_consen 26 FAEVEEGDIRLTPLGRRFA 44 (120)
T ss_pred CeeecCCcEEeccchHHHH
Confidence 3577899999999765544
No 187
>PRK10878 hypothetical protein; Provisional
Probab=27.49 E-value=62 Score=21.76 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.7
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHHH
Q 046110 47 VWVIGTGKVAVPAQAQEVHAELRKWLK 73 (130)
Q Consensus 47 vWAIGtG~~as~~~i~~v~~~IR~~l~ 73 (130)
-|..|.+.+++++. +++++.||+..+
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~~ 65 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRNR 65 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhcC
Confidence 48898888877665 678899998543
No 188
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.20 E-value=2.5e+02 Score=23.71 Aligned_cols=88 Identities=14% Similarity=-0.040 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC--CChHHHHHHHHHHHHHHHhccChhhcCcCcEEE--cCCC
Q 046110 17 WRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV--AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY--RDTV 92 (130)
Q Consensus 17 ~~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~--as~~~i~~v~~~IR~~l~~~~~~~~a~~irILY--GGSV 92 (130)
++..+.|.++++..+.... ..++--.| +|.|.| .+++++.++...||+.+....+ ..+. +. ++++
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~-~~~v~ti~-----~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~----~eit-~e~np~~l 105 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQ-GREVHSIF-----IGGGTPSLFSAEAIQRLLDGVRARLPFAPD----AEIT-MEANPGTV 105 (378)
T ss_pred HHHHHHHHHHHHHHhHhcc-CCceeEEE-----eCCCccccCCHHHHHHHHHHHHHhCCCCCC----cEEE-EEeCcCcC
Confidence 3456667777764333221 12232234 666655 4589999999999987532111 1121 22 5888
Q ss_pred CcccHHHHHcccCCCcceEEEeeeec
Q 046110 93 INSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 93 ~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+.+.++.+.. ..++-+-+|.=|+
T Consensus 106 ~~e~l~~Lk~---~Gv~risiGvqS~ 128 (378)
T PRK05660 106 EADRFVGYQR---AGVNRISIGVQSF 128 (378)
T ss_pred CHHHHHHHHH---cCCCEEEeccCcC
Confidence 8888888865 3457777777665
No 189
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=26.84 E-value=1.2e+02 Score=18.04 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKD 74 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~ 74 (130)
-|.-+++|+...-...+|+++.-
T Consensus 8 Pg~~a~~e~l~~Y~~~L~~Yinl 30 (36)
T smart00309 8 PGDDASPEDLRQYLAALREYINL 30 (36)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 37789999999999999998753
No 190
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=26.80 E-value=37 Score=22.46 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=22.2
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 49 VIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 49 AIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
|=|||.+| +...++..+... ...++.++||-.-..+-
T Consensus 3 agGtGIaP-------~~s~l~~~~~~~----~~~~v~l~~~~r~~~~~ 39 (109)
T PF00175_consen 3 AGGTGIAP-------FLSMLRYLLERN----DNRKVTLFYGARTPEDL 39 (109)
T ss_dssp EEGGGGHH-------HHHHHHHHHHHT----CTSEEEEEEEESSGGGS
T ss_pred ecceeHHH-------HHHHHHHHHHhC----CCCCEEEEEEEcccccc
Confidence 34677766 566666655442 24567888887655443
No 191
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=26.74 E-value=1.1e+02 Score=25.03 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 56 AVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 56 as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
.+++++.++.+.+++ .+++.==|-+|++|+.+++.. .+|++=+
T Consensus 207 ~~~e~lk~~v~~~~~------------~ipi~AsGGI~~~ni~~~a~~---Gvd~Isv 249 (265)
T TIGR00078 207 MKPEEIKEAVQLLKG------------RVLLEASGGITLDNLEEYAET---GVDVISS 249 (265)
T ss_pred CCHHHHHHHHHHhcC------------CCcEEEECCCCHHHHHHHHHc---CCCEEEe
Confidence 456776666655431 267888899999999999864 4576666
No 192
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.62 E-value=37 Score=28.47 Aligned_cols=40 Identities=5% Similarity=-0.066 Sum_probs=29.7
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeecccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVF 125 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F 125 (130)
++||+.+|++ +++.+++++.. -..|.+.+|++.+ .||+-|
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~--g~~D~V~~gR~~l-~dP~~~ 316 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLAD--GDADMVSMARPFL-ADPDFV 316 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHC--CCCChhHhhHHHH-HCccHH
Confidence 5799999987 78889999875 3458888877765 455544
No 193
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.36 E-value=1.3e+02 Score=21.13 Aligned_cols=31 Identities=3% Similarity=-0.208 Sum_probs=20.7
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
+++++.||+..++..+++... . +|++ ++.++
T Consensus 81 ~i~i~~GG~~~~~~~~~~~~~-G--~d~~-~~~~~ 111 (122)
T cd02071 81 DILVVGGGIIPPEDYELLKEM-G--VAEI-FGPGT 111 (122)
T ss_pred CCEEEEECCCCHHHHHHHHHC-C--CCEE-ECCCC
Confidence 688999999887777777653 3 4544 34443
No 194
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=26.31 E-value=98 Score=27.39 Aligned_cols=32 Identities=9% Similarity=-0.197 Sum_probs=22.1
Q ss_pred CcCcEEEcCCCCcccHHHHHc-ccCCCcceEEE
Q 046110 82 ASTRIIYRDTVINSTLQLNIQ-YYYPNLFIELT 113 (130)
Q Consensus 82 ~~irILYGGSV~~~N~~~l~~-~~~~dvdG~Li 113 (130)
..+|++|+||=-.+=.+-|++ ...+.+||++=
T Consensus 182 ~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iD 214 (403)
T PF11144_consen 182 GGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVID 214 (403)
T ss_pred CCCcEEEEecCcHHHHHHHHHhhCccceeEEEe
Confidence 357888877777777777766 55666776654
No 195
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.08 E-value=3.4e+02 Score=23.60 Aligned_cols=88 Identities=17% Similarity=0.067 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC--CChHHHHHHHHHHHHHHHhccChhhcCcCcE-EEcCCCCcc
Q 046110 19 GLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV--AVPAQAQEVHAELRKWLKDNVNAEVAASTRI-IYRDTVINS 95 (130)
Q Consensus 19 ~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~--as~~~i~~v~~~IR~~l~~~~~~~~a~~irI-LYGGSV~~~ 95 (130)
..+.|.++++...........+.--| +|.|.| .+++++.++++.|++.+....+ ..+.+ .-..+++.+
T Consensus 83 y~~~L~~Ei~~~~~~~~~~~~v~~i~-----fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~----~e~tie~~p~~lt~e 153 (453)
T PRK13347 83 YVAALIREIRLVAASLPQRRRVSQLH-----WGGGTPTILNPDQFERLMAALRDAFDFAPE----AEIAVEIDPRTVTAE 153 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEE-----EcCcccccCCHHHHHHHHHHHHHhCCCCCC----ceEEEEeccccCCHH
Confidence 45667777765443322111221112 666655 6799999999999886432111 11111 347788888
Q ss_pred cHHHHHcccCCCcceEEEeeeec
Q 046110 96 TLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 96 N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
.++.+.+. .+.-+-+|.=|+
T Consensus 154 ~l~~L~~~---G~~rvsiGvQS~ 173 (453)
T PRK13347 154 MLQALAAL---GFNRASFGVQDF 173 (453)
T ss_pred HHHHHHHc---CCCEEEECCCCC
Confidence 88888653 456666766655
No 196
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=25.71 E-value=91 Score=26.45 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=37.3
Q ss_pred CceEEEeeeeeecCCCCC-----------CChHHH-HHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccC
Q 046110 38 DNVVLAYEPVWVIGTGKV-----------AVPAQA-QEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYY 105 (130)
Q Consensus 38 ~~vvIAYEPvWAIGtG~~-----------as~~~i-~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~ 105 (130)
+-++|+-|-.. =|...| .|.+|+ +++..+|+. +...+.. ..+..=|++|||=. ++....+...+
T Consensus 59 ~a~~v~lEHRy-YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~-~~~~~~~-~~~~pwI~~GgSY~-G~Laaw~r~ky 134 (434)
T PF05577_consen 59 GALVVALEHRY-YGKSQPFGDLSTENLRYLTSEQALADLAYFIRY-VKKKYNT-APNSPWIVFGGSYG-GALAAWFRLKY 134 (434)
T ss_dssp TEEEEEE--TT-STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHH-HHHHTTT-GCC--EEEEEETHH-HHHHHHHHHH-
T ss_pred CCcEEEeehhh-hcCCCCccccchhhHHhcCHHHHHHHHHHHHHH-HHHhhcC-CCCCCEEEECCcch-hHHHHHHHhhC
Confidence 34666767665 443222 344444 445555543 4444421 12233477799986 67777777788
Q ss_pred CCcceEEEeeeeccc
Q 046110 106 PNLFIELTLAFSIRY 120 (130)
Q Consensus 106 ~dvdG~Lig~~s~~~ 120 (130)
|++.-.=+ ||+++
T Consensus 135 P~~~~ga~--ASSap 147 (434)
T PF05577_consen 135 PHLFDGAW--ASSAP 147 (434)
T ss_dssp TTT-SEEE--EET--
T ss_pred CCeeEEEE--eccce
Confidence 97653333 56543
No 197
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=25.68 E-value=31 Score=28.79 Aligned_cols=27 Identities=4% Similarity=-0.284 Sum_probs=20.9
Q ss_pred cccHHHHHcccCCCcceEEEeeeeccccc
Q 046110 94 NSTLQLNIQYYYPNLFIELTLAFSIRYQG 122 (130)
Q Consensus 94 ~~N~~~l~~~~~~dvdG~Lig~~s~~~~~ 122 (130)
-+|+..|+... -|||+|||-+-++++.
T Consensus 157 l~nLDaIaave--GVDgvFiGPaDLaas~ 183 (255)
T COG3836 157 LDNLDAIAAVE--GVDGVFIGPADLAASL 183 (255)
T ss_pred HHHHHHHHccC--CCCeEEECHHHHHHHc
Confidence 46888888874 4699999988777653
No 198
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=25.64 E-value=84 Score=24.97 Aligned_cols=69 Identities=22% Similarity=0.127 Sum_probs=51.4
Q ss_pred ccccccceeEEEEehhhhHHHHHHHHHHHhcccc-C-CCceE--------EEeeeeee---------cCCCCCCChHHHH
Q 046110 2 LFEFREDVILLILVKWRGLIDLGSVVETLCGKIS-N-WDNVV--------LAYEPVWV---------IGTGKVAVPAQAQ 62 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~Ql~~~l~~i~-~-~~~vv--------IAYEPvWA---------IGtG~~as~~~i~ 62 (130)
+-++|++-.-|.|+.......+.+|++..-+..- . ..+++ +|..|+|. ++.|.-+.....+
T Consensus 5 lTk~r~~l~~l~~~~~~~a~~vi~~i~~~q~~~~~~~g~~fv~~sDEfYl~Ag~p~P~~~~Y~~fpQlenGVGm~r~f~~ 84 (204)
T PF04459_consen 5 LTKHREGLYPLRPFTPEEAREVIDQIESWQREFRKEYGTRFVYLSDEFYLLAGRPLPDAEFYEDFPQLENGVGMVRLFLD 84 (204)
T ss_pred eccccCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEechHHHHHcCCCCCChhhcCCCcccCCCeeEhHHHHH
Confidence 3578888888899988888888888876655432 2 34677 89999998 7888877777777
Q ss_pred HHHHHHHH
Q 046110 63 EVHAELRK 70 (130)
Q Consensus 63 ~v~~~IR~ 70 (130)
+..+.+++
T Consensus 85 e~~~~l~~ 92 (204)
T PF04459_consen 85 EWEEALRK 92 (204)
T ss_pred HHHHHHhh
Confidence 66666665
No 199
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=25.41 E-value=82 Score=26.77 Aligned_cols=41 Identities=10% Similarity=-0.150 Sum_probs=30.0
Q ss_pred cCcEEEcCCC-CcccHHHHHcccCCCcceEEEeeeeccccccccc
Q 046110 83 STRIIYRDTV-INSTLQLNIQYYYPNLFIELTLAFSIRYQGDVFS 126 (130)
Q Consensus 83 ~irILYGGSV-~~~N~~~l~~~~~~dvdG~Lig~~s~~~~~~~F~ 126 (130)
++|++.-|.+ +++.+++++.. -..|.+.+|++.+ .||+-+.
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~--g~~D~V~~gR~~l-adP~l~~ 330 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKS--GILDLIGAARPSI-ADPFLPK 330 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHc--CCCCeeeechHhh-hCchHHH
Confidence 4789998887 57889999975 3458889988776 4555443
No 200
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=25.40 E-value=76 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccC
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYY 105 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~ 105 (130)
|..+++-+-.+....+|+.+.+..+ .......|+|||..+++-++.+..+..
T Consensus 266 gvR~DSGd~~~~~~~~~~~l~~~g~-~~~~~~ii~sg~l~~~~~i~~~~~~~~ 317 (343)
T cd01567 266 GVRLDSGDPVELIKKVRKHLDELGI-DLNKKKIIISGDLDTEEAIELLLEQGA 317 (343)
T ss_pred EEECCCCCHHHHHHHHHHHHHHcCC-CCCCeEEEEECCCCHHHHHHHHHHcCC
Confidence 5566666666777778887776543 223466788899988999998887754
No 201
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=25.20 E-value=4.1e+02 Score=22.97 Aligned_cols=89 Identities=12% Similarity=-0.006 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCC--ChHHHHHHHHHHHHHHHhccChhhcCcCc-EEEcCCCCc
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVA--VPAQAQEVHAELRKWLKDNVNAEVAASTR-IIYRDTVIN 94 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~a--s~~~i~~v~~~IR~~l~~~~~~~~a~~ir-ILYGGSV~~ 94 (130)
+..+.|.++++...+..++..++---| +|.|.+- +++++.++++.||+.+....+ ..+. -.-+.++++
T Consensus 81 ~y~~~L~~Ei~~~~~~~~~~~~v~~I~-----fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~----~eitie~np~~l~~ 151 (455)
T TIGR00538 81 PYLDALEKEIALVAPLFDGNRHVSQLH-----WGGGTPTYLSPEQISRLMKLIRENFPFNAD----AEISIEIDPRYITK 151 (455)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEE-----ECCCCcCCCCHHHHHHHHHHHHHhCCCCCC----CeEEEEeccCcCCH
Confidence 356677777776543322112222223 6766664 899999999999986431111 1111 134678888
Q ss_pred ccHHHHHcccCCCcceEEEeeeec
Q 046110 95 STLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 95 ~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+-++.+.+. .+..+.||.=|+
T Consensus 152 e~l~~lk~~---G~~risiGvqS~ 172 (455)
T TIGR00538 152 DVIDALRDE---GFNRLSFGVQDF 172 (455)
T ss_pred HHHHHHHHc---CCCEEEEcCCCC
Confidence 888877653 456777766655
No 202
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=24.88 E-value=1.5e+02 Score=19.83 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC-CChHHHHHH
Q 046110 18 RGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV-AVPAQAQEV 64 (130)
Q Consensus 18 ~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~-as~~~i~~v 64 (130)
...+.|.+=++.+|......+--.||. | +||||.- .+++++.++
T Consensus 73 ~~~~~L~~~~~~~l~~a~~~~~~sIa~-P--~ig~G~~g~~~~~~a~i 117 (118)
T PF01661_consen 73 NSYEALESAYRNALQKAEENGIKSIAF-P--AIGTGIGGFPWDEVAEI 117 (118)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSEEEE-E--STTSSTTSBTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCccccc-C--cccCCCCCCCHHHHHhh
Confidence 345555555666665443212113444 5 5777754 455555443
No 203
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=36 Score=26.90 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.0
Q ss_pred EEee-eeeecCCCCC
Q 046110 42 LAYE-PVWVIGTGKV 55 (130)
Q Consensus 42 IAYE-PvWAIGtG~~ 55 (130)
|..| ++||||+|..
T Consensus 117 ~epe~~~~aIGSGgn 131 (178)
T COG5405 117 IEPEDDIIAIGSGGN 131 (178)
T ss_pred ecCCCCeEEEcCCch
Confidence 4444 3999999873
No 204
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=24.65 E-value=1e+02 Score=19.54 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCh-hhcCcCcEEEcCCCCccc
Q 046110 65 HAELRKWLKDNVNA-EVAASTRIIYRDTVINST 96 (130)
Q Consensus 65 ~~~IR~~l~~~~~~-~~a~~irILYGGSV~~~N 96 (130)
...+|+.+.+..|- ...++.+++|+|.+-.++
T Consensus 23 V~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~ 55 (77)
T cd01805 23 VAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD 55 (77)
T ss_pred HHHHHHHHHHhhCCCCChhHeEEEECCEEccCC
Confidence 45556666655542 135678999999987666
No 205
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=24.34 E-value=1.2e+02 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceE
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIE 111 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~ 111 (130)
|..+++-+.......+|+.+.+. | -++++|+++|+.+.+-+.+|... +.-+|+.
T Consensus 251 gVR~DSGD~~~l~~~vr~~ld~~-G---~~~vkIi~S~gLde~~i~~l~~~-g~~~d~f 304 (443)
T TIGR01513 251 GVRIDSGDLLYLSKQARKQLDAA-G---LTQVKIVVSNDLDENSIAALKAE-GAPIDVY 304 (443)
T ss_pred eEecCCCCHHHHHHHHHHHHHHc-C---CCCcEEEEeCCCCHHHHHHHHHC-CCceeEE
Confidence 44555555567777788777665 3 34689999999999999999864 3334544
No 206
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=24.33 E-value=3.2e+02 Score=21.95 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=32.0
Q ss_pred CccccccceeEEEEe---hhhhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHH
Q 046110 1 PLFEFREDVILLILV---KWRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWL 72 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l 72 (130)
|++.|++|.+.+.-. .+++.+.+.+++....... +..++.|.| + -+++.+++..+.+++.+
T Consensus 185 PIi~~~~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~~-~~~~i~i~~--------~--~~~e~~~~l~~~l~~~~ 248 (275)
T TIGR00762 185 PILTVDDGKLVPIEKVRGRKKAIKKLVELVKEDIKDG-KPKRVAIIH--------A--DAEEEAEELKEKLKEKF 248 (275)
T ss_pred eEEEEeCCEEEEeeccccHHHHHHHHHHHHHHhhccC-CCcEEEEEe--------C--CCHHHHHHHHHHHHhHC
Confidence 788898887654322 2344444444444333221 123344444 2 25777777776666543
No 207
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=24.29 E-value=57 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 64 VHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 64 v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
....+|+.+.+..| ..+...+++|+|.+-.++
T Consensus 20 TV~~lK~~I~~~~g-i~~~~q~Li~~G~~L~D~ 51 (70)
T cd01794 20 TVGQLKKQLQAAEG-VDPCCQRWFFSGKLLTDK 51 (70)
T ss_pred hHHHHHHHHHHHhC-CCHHHeEEEECCeECCCC
Confidence 45566666666554 335567999999987665
No 208
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.11 E-value=69 Score=24.21 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=23.8
Q ss_pred cCcEEEcCCCCcccHHHHHcccCCCcceEEEeeee
Q 046110 83 STRIIYRDTVINSTLQLNIQYYYPNLFIELTLAFS 117 (130)
Q Consensus 83 ~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~s 117 (130)
-+|+.--|+||++=+-+=+.. ++ ||+|++|-.
T Consensus 32 iIrv~CsGrvn~~fvl~Al~~-Ga--DGV~v~GC~ 63 (132)
T COG1908 32 IIRVMCSGRVNPEFVLKALRK-GA--DGVLVAGCK 63 (132)
T ss_pred EEEeeccCccCHHHHHHHHHc-CC--CeEEEeccc
Confidence 457778999999987776653 45 899997653
No 209
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.00 E-value=4.2e+02 Score=22.55 Aligned_cols=88 Identities=15% Similarity=0.010 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHhccccCCCceEEEeeeeeecCCCC--CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEc--CCC
Q 046110 17 WRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGK--VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYR--DTV 92 (130)
Q Consensus 17 ~~~~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~--~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYG--GSV 92 (130)
++..+.|.++++...+... ..++--.| ||.|. ..+++++.++...||+.+.... ...+ -++. +++
T Consensus 52 ~~Y~~~l~~ei~~~~~~~~-~~~i~siy-----~GGGTPs~L~~~~L~~ll~~i~~~~~~~~----~~ei-t~E~~p~~~ 120 (394)
T PRK08898 52 AAYLDALRADLEQALPLVW-GRQVHTVF-----IGGGTPSLLSAAGLDRLLSDVRALLPLDP----DAEI-TLEANPGTF 120 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceeEEE-----ECCCCcCCCCHHHHHHHHHHHHHhCCCCC----CCeE-EEEECCCCC
Confidence 5678888888875433221 12222224 66554 4789999999999998774321 0112 3454 778
Q ss_pred CcccHHHHHcccCCCcceEEEeeeec
Q 046110 93 INSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 93 ~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
+.+..+.|.. .-++-+-+|.=|+
T Consensus 121 ~~e~L~~l~~---~GvnrisiGvQS~ 143 (394)
T PRK08898 121 EAEKFAQFRA---SGVNRLSIGIQSF 143 (394)
T ss_pred CHHHHHHHHH---cCCCeEEEecccC
Confidence 8877777754 3456777777765
No 210
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.86 E-value=1.7e+02 Score=25.39 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=36.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEeee
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTLAF 116 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig~~ 116 (130)
|..+++...+-++.+.+|+.. -.++|+-||.--.-+.++.+.. .+.+|-++.|=|
T Consensus 75 s~~t~~~~~~~~ia~~iK~~~---------p~~~vv~GG~h~t~~pe~~l~~-~~~vD~Vv~GEg 129 (472)
T TIGR03471 75 HTSTPSFPSDVKTAEALKEQN---------PATKIGFVGAHVAVLPEKTLKQ-GPAIDFVCRREF 129 (472)
T ss_pred ECCCcchHHHHHHHHHHHHhC---------CCCEEEEECCCcccCHHHHHhc-CCCeeEEEeCch
Confidence 556777777777777777542 2467888886655677777753 256787777543
No 211
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.61 E-value=1.1e+02 Score=25.27 Aligned_cols=44 Identities=7% Similarity=-0.118 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 55 VAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 55 ~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
..++++++++.+.++ .++++.==|-+|++|+.++++. .+||+-+
T Consensus 216 ~~~~e~l~~~~~~~~------------~~i~i~AiGGIt~~ni~~~a~~---Gvd~IAv 259 (277)
T PRK08072 216 NRTPDEIREFVKLVP------------SAIVTEASGGITLENLPAYGGT---GVDYISL 259 (277)
T ss_pred CCCHHHHHHHHHhcC------------CCceEEEECCCCHHHHHHHHHc---CCCEEEE
Confidence 367777766665442 1356667889999999999974 5687766
No 212
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=23.26 E-value=59 Score=25.99 Aligned_cols=43 Identities=12% Similarity=-0.070 Sum_probs=31.9
Q ss_pred cCcEEEcCCCC-cccHHHHHcccCCCcceEEEeeeecccc-cccccccc
Q 046110 83 STRIIYRDTVI-NSTLQLNIQYYYPNLFIELTLAFSIRYQ-GDVFSCIC 129 (130)
Q Consensus 83 ~irILYGGSV~-~~N~~~l~~~~~~dvdG~Lig~~s~~~~-~~~F~~I~ 129 (130)
+++|+..|.|+ ++++.+++.. . .|++.+|.+.. .| |+-|.+|+
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~-G--Ad~V~vg~a~~-~~GP~~~~~i~ 287 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMA-G--ASAVQVATALM-WDGPDVIRKIK 287 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-C--ccHheEcHHHH-hcCccHHHHHh
Confidence 57899977775 7999999973 3 58888876665 35 77776654
No 213
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=23.04 E-value=1.1e+02 Score=28.02 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=29.3
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCC
Q 046110 50 IGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPN 107 (130)
Q Consensus 50 IGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~d 107 (130)
=|||++.+-+.++ .+ . .+.+++-.|-++|+|++++++...+.
T Consensus 142 GGtG~~fdw~~~~-------~~-~--------~~~p~iLAGGL~peNV~~ai~~~~p~ 183 (610)
T PRK13803 142 GGSGKSFDWEKFY-------NY-N--------FKFPFFLSGGLSPTNFDRIINLTHPQ 183 (610)
T ss_pred CCCCCccChHHhh-------hc-c--------cCCcEEEEeCCCHHHHHHHHhhhCCC
Confidence 3689988876542 11 1 12468889999999999999855553
No 214
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=22.96 E-value=51 Score=21.84 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 64 VHAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 64 v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
....+|+.+.+..| ..+...|++|+|.+=.++
T Consensus 24 TV~~lK~~i~~~~g-i~~~~QrLi~~Gk~L~D~ 55 (78)
T cd01797 24 KVEELREKIQELFN-VEPECQRLFYRGKQMEDG 55 (78)
T ss_pred cHHHHHHHHHHHhC-CCHHHeEEEeCCEECCCC
Confidence 34455555555544 335567999999997665
No 215
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=22.73 E-value=63 Score=20.37 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHH
Q 046110 64 VHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNI 101 (130)
Q Consensus 64 v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~ 101 (130)
....+|+.+++..|- ..+..+++|+|.+-.++ ..|-
T Consensus 20 tV~~lK~~i~~~~gi-~~~~q~Li~~G~~L~d~-~~l~ 55 (70)
T cd01798 20 DIKQLKEVVAKRQGV-PPDQLRVIFAGKELRNT-TTIQ 55 (70)
T ss_pred hHHHHHHHHHHHHCC-CHHHeEEEECCeECCCC-CcHH
Confidence 445556666665543 34567999999997655 4443
No 216
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=22.47 E-value=46 Score=26.52 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=15.2
Q ss_pred CcCcEEEcCCCCcccHHHHH
Q 046110 82 ASTRIIYRDTVINSTLQLNI 101 (130)
Q Consensus 82 ~~irILYGGSV~~~N~~~l~ 101 (130)
.++=++||||.+|=....+.
T Consensus 21 ~~~v~i~GGSFdP~H~gHl~ 40 (236)
T PLN02945 21 TRVVLVATGSFNPPTYMHLR 40 (236)
T ss_pred ceEEEEEcCCCCCCcHHHHH
Confidence 35568999999998766554
No 217
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.54 E-value=83 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=18.8
Q ss_pred CcEEEcCCCCcccHHHHHcccCC
Q 046110 84 TRIIYRDTVINSTLQLNIQYYYP 106 (130)
Q Consensus 84 irILYGGSV~~~N~~~l~~~~~~ 106 (130)
.|++-+|-++|+|+.+++..-.+
T Consensus 155 ~p~~LAGGi~peNv~~ai~~~~p 177 (210)
T PRK01222 155 KPWILAGGLNPDNVAEAIRQVRP 177 (210)
T ss_pred CCEEEECCCCHHHHHHHHHhcCC
Confidence 37889999999999999975234
No 218
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=21.36 E-value=1.7e+02 Score=17.30 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh
Q 046110 52 TGKVAVPAQAQEVHAELRKWLKD 74 (130)
Q Consensus 52 tG~~as~~~i~~v~~~IR~~l~~ 74 (130)
-|.-+++|+.+.-...+|+++.-
T Consensus 8 Pg~~a~~eel~~Y~~~L~~Yinl 30 (36)
T cd00126 8 PGDDASPEELRQYLAALREYINL 30 (36)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 36778999999999999998753
No 219
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=21.07 E-value=40 Score=23.03 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=17.6
Q ss_pred EEEcCCCCcccHHHHHccc-CCCcc
Q 046110 86 IIYRDTVINSTLQLNIQYY-YPNLF 109 (130)
Q Consensus 86 ILYGGSV~~~N~~~l~~~~-~~dvd 109 (130)
-|| |||++.++.+.++.. +.++|
T Consensus 27 klf-GSVt~~dIa~~l~~~~g~~Id 50 (87)
T PF03948_consen 27 KLF-GSVTSKDIAKALKEQTGIEID 50 (87)
T ss_dssp SBS-SEBSHHHHHHHHHHCCSSSSS
T ss_pred cee-cCcCHHHHHHHHHHhhCCeEe
Confidence 467 599999999988865 55555
No 220
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.02 E-value=3.3e+02 Score=22.00 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=37.5
Q ss_pred eEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEEe
Q 046110 40 VVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELTL 114 (130)
Q Consensus 40 vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Lig 114 (130)
++..=||-. .|+..-++-.++ ++.+|+.+.++ +-+..|-==|+||.+|++.+... .+|.+..|
T Consensus 145 LiMtV~PGf---gGQ~f~~~~l~K-I~~lr~~~~~~-----~~~~~IeVDGGI~~~ti~~l~~a---GaD~~V~G 207 (228)
T PRK08091 145 QILTLDPRT---GTKAPSDLILDR-VIQVENRLGNR-----RVEKLISIDGSMTLELASYLKQH---QIDWVVSG 207 (228)
T ss_pred EEEEECCCC---CCccccHHHHHH-HHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHHC---CCCEEEEC
Confidence 566778833 466655553333 33444444332 22455777899999999998753 44655553
No 221
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.97 E-value=3e+02 Score=23.28 Aligned_cols=33 Identities=6% Similarity=-0.128 Sum_probs=24.8
Q ss_pred cCcEE---EcCCCCcccHHHHHcccCCCcceEEEeeeec
Q 046110 83 STRII---YRDTVINSTLQLNIQYYYPNLFIELTLAFSI 118 (130)
Q Consensus 83 ~irIL---YGGSV~~~N~~~l~~~~~~dvdG~Lig~~s~ 118 (130)
++|++ -||=-+|+|+.+++.. ..||+++|.+-.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~---GAdgVaVGSAI~ 229 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQL---GADGVFVGSGIF 229 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHc---CCCEEEEcHHhh
Confidence 47886 4665599999999974 459999966643
No 222
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.96 E-value=50 Score=27.61 Aligned_cols=31 Identities=6% Similarity=-0.238 Sum_probs=18.2
Q ss_pred EEEcCCCCcccHHHHHc----ccCCCcceEEEeee
Q 046110 86 IIYRDTVINSTLQLNIQ----YYYPNLFIELTLAF 116 (130)
Q Consensus 86 ILYGGSV~~~N~~~l~~----~~~~dvdG~Lig~~ 116 (130)
.+||||.||=....+.- ......|-+++-.+
T Consensus 4 ~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~ 38 (342)
T PRK07152 4 AIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPT 38 (342)
T ss_pred EEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 48999999977644321 11233566665443
No 223
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=20.95 E-value=1.9e+02 Score=17.81 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccChhhcCcCcEEEcCCCCccc
Q 046110 65 HAELRKWLKDNVNAEVAASTRIIYRDTVINST 96 (130)
Q Consensus 65 ~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N 96 (130)
...+|+.+.+..| ....+.+++|+|..-.++
T Consensus 22 v~~lK~~i~~~~g-i~~~~q~L~~~g~~l~d~ 52 (71)
T cd01812 22 FGDLKKMLAPVTG-VEPRDQKLIFKGKERDDA 52 (71)
T ss_pred HHHHHHHHHHhhC-CChHHeEEeeCCcccCcc
Confidence 3444555555443 235567999999876543
No 224
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=20.85 E-value=3.8e+02 Score=20.31 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCceEEEeeeeeecCCCCCCChHHHHHHHHHHHHHHHh
Q 046110 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKD 74 (130)
Q Consensus 37 ~~~vvIAYEPvWAIGtG~~as~~~i~~v~~~IR~~l~~ 74 (130)
.+++ +-| | +|==+..-++|+.+.++++.+.+.|.+
T Consensus 72 ~~~i-vly-P-yAHLSs~La~P~~A~~iL~~le~~L~~ 106 (138)
T PF08915_consen 72 AKRI-VLY-P-YAHLSSSLASPDVAVEILKKLEERLKS 106 (138)
T ss_dssp -SEE-EEE-E--GGGSSSB--HHHHHHHHHHHHHHHHH
T ss_pred CCEE-EEe-C-cccccCCcCChHHHHHHHHHHHHHHHh
Confidence 4554 447 6 555578889999999999999999854
No 225
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=20.67 E-value=1.4e+02 Score=25.20 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHHHHHcccCCCcceEEE
Q 046110 53 GKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLFIELT 113 (130)
Q Consensus 53 G~~as~~~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~~l~~~~~~dvdG~Li 113 (130)
|...++-+..+....+|+.+.+. |. ++++|+++++.+.+-+.+|.+. ..-.|..=|
T Consensus 252 gvR~DSGd~~~~~~~~r~~l~~~-G~---~~~~Iv~Sdgld~~~i~~l~~~-g~~~d~fGv 307 (327)
T cd01570 252 GVRIDSGDLAYLSKEARKMLDEA-GL---TKVKIVASNDLDEYTIAALNAQ-GAPIDAFGV 307 (327)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHC-CC---CCcEEEEeCCCCHHHHHHHHHC-CCeeEEEec
Confidence 33444444556666677777654 32 4579999999999999999863 333454433
No 226
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=20.25 E-value=2.2e+02 Score=20.07 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhccccCCCceEEEeeeeeecCCCCC-CChHHHH
Q 046110 20 LIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKV-AVPAQAQ 62 (130)
Q Consensus 20 ~~~l~~Ql~~~l~~i~~~~~vvIAYEPvWAIGtG~~-as~~~i~ 62 (130)
.+.|.+-++++|....+.+--.||. | +||||.- -+++++.
T Consensus 85 ~~~l~~~~~~~l~~a~~~~~~sIA~-P--~igtG~~g~~~~~~a 125 (133)
T cd03330 85 EESVRKATRAALALADELGIESVAF-P--AMGTGVGGLPKEDVA 125 (133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-C--cccccCCCCCHHHHH
Confidence 3445555555554432222224566 6 6777654 3344433
No 227
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=20.16 E-value=1.1e+02 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccChhhcCcCcEEEcCCCCcccHH
Q 046110 60 QAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQ 98 (130)
Q Consensus 60 ~i~~v~~~IR~~l~~~~~~~~a~~irILYGGSV~~~N~~ 98 (130)
-+...-+.||+.+. ......++|++|-|-+=.+...
T Consensus 25 Tv~~LK~lIR~~~p---~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 25 TVAWLKQLIRERLP---PEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred cHHHHHHHHHhhcC---CCCccccEEeeecCcccCccch
Confidence 33444445555552 2344678999999998765543
Done!