RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046110
(130 letters)
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 112 bits (282), Expect = 9e-32
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+S+ N+V+AYEP+W IGTG VA P QAQE HA +R+++ N +V+++ RIIY
Sbjct: 176 DVSDLSNLVIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIY 231
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 111 bits (280), Expect = 1e-31
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ +W VV+AYEPVW IGTGK A P QAQEVH+++R WL NV+A+VA+ RI Y
Sbjct: 153 NVKDWSKVVIAYEPVWAIGTGKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQY 208
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 111 bits (281), Expect = 1e-31
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
K+++W NVV+AYEPVW IGTGK A P QAQ+VH LR+W+ +N++A+V S RI Y
Sbjct: 152 KVNDWSNVVIAYEPVWAIGTGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQY 207
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 111 bits (281), Expect = 2e-31
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
K +W+N+V+AYEPVW IGTGK A QAQEVH +R +LK+ V+ VA +TRIIY
Sbjct: 172 KGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIY 227
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 110 bits (278), Expect = 2e-31
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
I N+DNV+L YEP+W IGTGK A P QAQ VH E+RK +KD + A RI+Y
Sbjct: 153 LIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILY 208
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 110 bits (278), Expect = 2e-31
Identities = 38/56 (67%), Positives = 42/56 (75%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ +W VVLAYEPVW IGTGK A P QAQEVH +LR WLK NV+ VA STRIIY
Sbjct: 153 NVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIY 208
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 110 bits (277), Expect = 4e-31
Identities = 35/66 (53%), Positives = 41/66 (62%)
Query: 23 LGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAA 82
L ++ + L W VV+AYEPVW IGTG VA P QA+EVH LRKW + V AE A
Sbjct: 148 LEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQ 207
Query: 83 STRIIY 88
RIIY
Sbjct: 208 HIRIIY 213
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 109 bits (274), Expect = 8e-31
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
W VV+AYEPVW IGTGKVA P QAQEVH LR+W++ + ++AA RI+Y
Sbjct: 149 SKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILY 204
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas
vaginalis} PDB: 3qsr_A
Length = 255
Score = 109 bits (274), Expect = 1e-30
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
WD+VV+AYEP+W IGTGKVA AQE+ +R L V A++A RI+Y
Sbjct: 157 PAGKWDDVVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILY 212
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 108 bits (273), Expect = 1e-30
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
W+ VVLAYEPVW IGTGKVA P QAQEVH LRKW+ +N+ +VAA RI+Y
Sbjct: 160 WNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILY 211
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 107 bits (271), Expect = 2e-30
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
K ++W VV+AYE VW IGTGKVA P QAQE HA +R W+ + A+VA RI+Y
Sbjct: 155 KKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILY 210
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 107 bits (271), Expect = 3e-30
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
W N++LAYEPVW IGTGK A P QAQEVH +RKW+ +N++ EVA +TRI Y
Sbjct: 162 SKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQY 217
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 101 bits (255), Expect = 8e-28
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
VV+AYEPVW IGTG+VA P QAQEVHA +RK L + + E A S RI+Y
Sbjct: 160 AKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILY 211
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 97.9 bits (245), Expect = 2e-26
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 34 ISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ ++ V+AYEPVW IGTGK A PAQAQ VH +R + V+A +A I Y
Sbjct: 156 AAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQY 209
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 97.1 bits (243), Expect = 4e-26
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+VV+AYEP+W IGTGK + A E+ A +R+ + D + EV+ +TRI Y
Sbjct: 162 LKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQY 213
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 94.5 bits (236), Expect = 6e-25
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+VV+AYEPVW IGTG+VA A AQEV A +RK L + +A + R++Y
Sbjct: 164 IGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLY 215
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 93.7 bits (234), Expect = 7e-25
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ +V+AYEPVW IGTGK A P A+ +H +RK L + A+ RI+Y
Sbjct: 158 PEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILY 209
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 93.3 bits (233), Expect = 1e-24
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
V+AYEP+W IGTGK + P A V +R + E A + RI Y
Sbjct: 158 VKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQY 209
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 92.9 bits (232), Expect = 2e-24
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ ++AYEP+W IGTGK A AQ +HA++R + + + VA + I Y
Sbjct: 161 LEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQY 211
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 91.1 bits (227), Expect = 1e-23
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 34 ISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ +N+++AYEPVW +GTG A A EVHA + + + A R++Y
Sbjct: 179 GATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHS-RFGDEGAKIRLLY 232
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 90.2 bits (225), Expect = 1e-23
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 26 VVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTR 85
+ E L N+ N+V+AYEP+W IGT K A H L++ L
Sbjct: 139 LSEQLENIDLNYPNLVVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKT--------P 190
Query: 86 IIY 88
++Y
Sbjct: 191 LLY 193
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 91.7 bits (228), Expect = 2e-23
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 34 ISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ V+ AYEPVW IG + A V + +R ++ ++ RI+Y
Sbjct: 212 LPRDAPVIFAYEPVWAIGKPQPARVDHVGAVVSGIRSVIER-IDRHRKGEVRILY 265
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 87.2 bits (217), Expect = 3e-22
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 37 WDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+V+AYEPVW IGTGK A QAQ+VHA LR L A+ A ++Y
Sbjct: 184 AARIVVAYEPVWAIGTGKSATAEQAQQVHAFLRGRLA----AKGAGHVSLLY 231
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 81.5 bits (202), Expect = 3e-20
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTV 92
++ ++ NVV+AYEPV IGTG A P AQ++HA +RK+L + + A+ RI+Y +
Sbjct: 152 EVKDFTNVVVAYEPVXAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSA 211
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 75.7 bits (187), Expect = 3e-18
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
++ +A EP +IGTG A + V +R E+ +++
Sbjct: 126 AVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAV------KEINKDVKVLC 175
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 74.2 bits (183), Expect = 2e-17
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
++ + +A EP +IGTG A+ + + + +V +++
Sbjct: 132 AVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVEL------VKKVNPEVKVLC 181
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 74.2 bits (183), Expect = 2e-17
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 33 KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
+ +A EP +IGTG+ + + + + + +I
Sbjct: 129 AAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLV------SRHFPEVSVIT 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.19
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 32/130 (24%)
Query: 3 FEFREDVILLILVKWRGLIDLGSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQ 62
E ++ + V +RG+ + V SN+ ++A P G+VA +
Sbjct: 1777 MSI-ESLVEV--VFYRGMT-MQVAVPRDELGRSNYG--MIAINP------GRVAASFSQE 1824
Query: 63 EVHAELRKWLKD--------NVNAE-----VAASTRIIYRDTVINSTLQLNIQYYYPNL- 108
+ + + K N N E A R + DTV N + +Q +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQ----KID 1878
Query: 109 FIELTLAFSI 118
IEL + S+
Sbjct: 1879 IIELQKSLSL 1888
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 2.4
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 41 VLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINSTLQLN 100
V+AYEP I + +P E+ + +N + + + + D +
Sbjct: 165 VIAYEPFENIA---IELP--PNEILFSENNDMDNNNDGVDELNKKCTFWD---AISKLYY 216
Query: 101 IQYYY 105
+Q+++
Sbjct: 217 VQFFF 221
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.1
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 55 VAVPAQAQEVHAELRKW 71
+A + + +RKW
Sbjct: 74 IAQADRLTQEPESIRKW 90
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 26.1 bits (56), Expect = 5.1
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 68 LRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLF 109
L K R+ + + L ++ +PNL+
Sbjct: 564 LLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLY 605
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 25.6 bits (55), Expect = 6.6
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 68 LRKWLKDNVNAEVAASTRIIYRDTVINSTLQLNIQYYYPNLF 109
+ K AEV R R V + + ++YP L
Sbjct: 583 VLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLL 624
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 25.3 bits (55), Expect = 7.7
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 67 ELRKWLKDNVNAEVAA--STRIIYRDTVINSTLQ 98
+ W N EVA + VIN+T Q
Sbjct: 693 KYAAWSSSNPECEVAHFPEQGLY---CVINNTDQ 723
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle,
structural genomics, PSI-2, protein structure
initiative; NMR {Moorella thermoacetica atcc 39073}
Length = 117
Score = 24.6 bits (54), Expect = 9.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 68 LRKWLKDNVNAEVAASTRIIYRDTV 92
L +WL D + ST Y +
Sbjct: 13 LNRWLTDYAKPHLRQSTWESYETVL 37
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 25.1 bits (54), Expect = 9.7
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 43 AYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIYRDTVINS--TLQLN 100
EP W +GTG A + +++W + EV A +Y+ S + N
Sbjct: 403 LVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVLAERESLYQLLSQTSPENMHRN 462
Query: 101 IQYY-------YPNLFIELTLAFSIRYQGDV 124
+ Y YPNL + ++ D+
Sbjct: 463 VAQYGLDPATRYPNLNLRAVTPNQVQDLYDM 493
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP,
single-stranded DNA, DNA dGTPase, HD superfamily,
structural genomics; 2.20A {Thermus thermophilus}
Length = 376
Score = 25.0 bits (55), Expect = 9.9
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 18 RGLIDL--GSVVETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDN 75
R L+ + +E ++ + V + E V + A+ +A++ L+ +L +
Sbjct: 249 RQLLGYFITAAIEATHRRVE--EAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLMER 306
Query: 76 ------VNAEVAASTRII 87
V E + ++
Sbjct: 307 FYRHPEVLRERRKAEAVL 324
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.435
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,055,859
Number of extensions: 111116
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 41
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.7 bits)