RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046110
         (130 letters)



>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 247

 Score = 44.1 bits (103), Expect = 7e-07
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query: 33  KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRIIY 88
           ++ ++ NVV+AYEPVW IGTG  A P  AQ++HA +RK+L   +  + A+  RI+Y
Sbjct: 152 EVKDFTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILY 207


>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 246

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 32/62 (51%), Positives = 40/62 (64%)

Query: 27  VETLCGKISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEVAASTRI 86
           V+     I N+DNV+L YEP+W IGTGK A P QAQ VH E+RK +KD    + A   RI
Sbjct: 145 VKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRI 204

Query: 87  IY 88
           +Y
Sbjct: 205 LY 206


>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
           [TaxId: 2271]}
          Length = 226

 Score = 33.4 bits (75), Expect = 0.005
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 33  KISNWDNVVLAYEPVWVIGTGKVAVPAQAQEVHAELRKWLKDNVNAEV 80
             +      +A EP  +IGTG+     + + +   +    +      V
Sbjct: 129 AAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSV 176


>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
          protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 28.3 bits (63), Expect = 0.10
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 45 EPVWVI--GTGKVAVPAQAQEVHAELRKWLKDNVNAEVA 81
          E V V+    GK    A A  +  +L +WL++N    VA
Sbjct: 17 ERVPVVNKRNGKKMGGAMAPPMK-DLPRWLEENPEFAVA 54


>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
          protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 25.2 bits (55), Expect = 0.84
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 45 EPVWVI--GTGKVAVPAQAQEVHAELRKWLKDNVNAEVA 81
            + VI    G + V   A     EL  WL+ +    V 
Sbjct: 7  TRIPVINKVDGTLLVGEDAPRRA-ELEMWLQGHPEFAVD 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 502,515
Number of extensions: 20465
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)