BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046111
MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD
GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF
DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ
LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT
KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL
VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL
RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN
FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGC
SPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQELA

High Scoring Gene Products

Symbol, full name Information P value
CHUP1
CHLOROPLAST UNUSUAL POSITIONING 1
protein from Arabidopsis thaliana 3.5e-139
AR791
AT1G52080
protein from Arabidopsis thaliana 1.8e-39

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046111
        (520 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2102385 - symbol:CHUP1 "CHLOROPLAST UNUSUAL PO...  1362  3.5e-139  1
TAIR|locus:2034091 - symbol:AR791 "AT1G52080" species:370...   421  1.8e-39   1


>TAIR|locus:2102385 [details] [associations]
            symbol:CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009707
            "chloroplast outer membrane" evidence=IDA] [GO:0009902 "chloroplast
            relocation" evidence=RCA;IMP] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0019684 "photosynthesis, light reaction" evidence=RCA]
            [GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
            "regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
            "transcription from plastid promoter" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP001313 GO:GO:0009707
            EMBL:AB087408 IPI:IPI00541711 RefSeq:NP_001189974.1
            RefSeq:NP_189197.2 UniGene:At.27741 ProteinModelPortal:Q9LI74
            STRING:Q9LI74 PaxDb:Q9LI74 PRIDE:Q9LI74 EnsemblPlants:AT3G25690.1
            EnsemblPlants:AT3G25690.2 GeneID:822157 KEGG:ath:AT3G25690
            TAIR:At3g25690 eggNOG:NOG310144 HOGENOM:HOG000242560
            InParanoid:Q9LI74 OMA:ELRNYQT PhylomeDB:Q9LI74
            ProtClustDB:CLSN2680868 Genevestigator:Q9LI74 GO:GO:0009902
            Uniprot:Q9LI74
        Length = 1004

 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 304/521 (58%), Positives = 347/521 (66%)

Query:     1 MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFXXXXXXXXXXXXFTCPD 60
             M VR GF+VAASIAA  VK+LN+K S  S    KPS NGE               +   D
Sbjct:     1 MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGEG----GDKEQSVDPDYNLND 52

Query:    61 GGLXXXXXXXXXXXXXVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID-- 118
               L             VKLI+S+ ++ RGS S+  D+DILPEFEDLLSGEIEY LP D  
Sbjct:    53 KNLQEEEEEEEEE---VKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPDDDN 109

Query:   119 KFDEAEKNKVYETEMADNAXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXQESDIVELQ 178
               ++AEK + YE EMA N                  V              QESDIVELQ
Sbjct:   110 NLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVELQ 169

Query:   179 RQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238
             RQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+  V+KELEVARNKIKELQRQIQLDAN
Sbjct:   170 RQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLDAN 229

Query:   239 XXXXXXXXXXXXXXXXXAKEEEAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIEKRE 298
                               KEEEA+                              Q EKRE
Sbjct:   230 QTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEKRE 289

Query:   299 LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358
             L +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEELV
Sbjct:   290 LSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELV 349

Query:   359 YLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLE 418
             YLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTDLE
Sbjct:   350 YLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDLE 409

Query:   419 SNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSI- 477
             SN+S PSSPGS+DFDNAS+DSSTS++S+ SKKP LIQKLKKWGKSKDD+S  SSP+RS  
Sbjct:   410 SNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFY 469

Query:   478 SGCXXXXXXXXXXXXGPLESLMLRNTSDSVAITTFGKMDQE 518
              G             GPLESLM+RN  +SVAITTFG++DQE
Sbjct:   470 GGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 510


>TAIR|locus:2034091 [details] [associations]
            symbol:AR791 "AT1G52080" species:3702 "Arabidopsis
            thaliana" [GO:0003779 "actin binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISM] EMBL:CP002684 HSSP:P05412
            EMBL:AC006216 EMBL:AF367324 EMBL:AY133607 IPI:IPI00521598
            PIR:F96560 RefSeq:NP_564600.1 UniGene:At.23676
            ProteinModelPortal:Q9SAU9 EnsemblPlants:AT1G52080.1 GeneID:841637
            KEGG:ath:AT1G52080 TAIR:At1g52080 InParanoid:Q9SAU9 OMA:LIMEYAN
            PhylomeDB:Q9SAU9 ProtClustDB:CLSN2688702 Genevestigator:Q9SAU9
            Uniprot:Q9SAU9
        Length = 573

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 107/317 (33%), Positives = 169/317 (53%)

Query:   170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKEL 229
             Q+   +EL+ +LK+  +E  + N  I  LQAE +KL+ +  + S V  EL++A+++++ L
Sbjct:   171 QQKIAMELRSRLKLNQMETKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQVQVL 230

Query:   230 QRQIQLDANXXXXXXXXXXXXXXXXXAKEEEAIXXXXXXXXXXXXXXXXXXXXXXXXXXX 289
             ++++ ++                    +E +A+                           
Sbjct:   231 KKKLNINTQQHVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290

Query:   290 XXXQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349
                Q E  EL  KL++ +  I + S + E E++   RE+ N LR  N++L K VE LQ +
Sbjct:   291 TRLQFENFELSEKLESVQ--IIANSKLEEPEEIETLREDCNRLRSENEELKKDVEQLQGD 348

Query:   350 RFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSE 409
             R  ++E+LVYLRW+NACLRYELR YQ PAGKT ARDL+ +LSP S+E+AKQL+LEYA SE
Sbjct:   349 RCTDLEQLVYLRWINACLRYELRTYQPPAGKTVARDLSTTLSPTSEEKAKQLILEYAHSE 408

Query:   410 RGQVDTDLESNFSHPSSPGSEDF--DNASIDSSTSKYSNLSKKPSLIQKLKK--WGKSKD 465
                 D D  S+    SS  ++    D++S+D+  +  +  + K  L+ KL K   GK   
Sbjct:   409 -DNTDYDRWSSSQEESSMITDSMFLDDSSVDTLFATKTKKTGKKKLMHKLMKILHGKDTK 467

Query:   466 DT---SALSSPARSISG 479
             D+   +  S P+ S +G
Sbjct:   468 DSKKRAGSSEPSSSNTG 484


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.126   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      520       405    0.0010  117 3  10 23  0.50    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  301 KB (2156 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  58.20u 0.16s 58.36t   Elapsed:  00:00:03
  Total cpu time:  58.20u 0.16s 58.36t   Elapsed:  00:00:03
  Start:  Fri May 10 21:04:50 2013   End:  Fri May 10 21:04:53 2013

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