BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046111
         (520 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P2S|A Chain A, Crystal Structure Of Putative Oxidoreductase (Yp_050235.1)
           From Erwinia Carotovora Atroseptica Scri1043 At 1.25 A
           Resolution
 pdb|2P2S|B Chain B, Crystal Structure Of Putative Oxidoreductase (Yp_050235.1)
           From Erwinia Carotovora Atroseptica Scri1043 At 1.25 A
           Resolution
          Length = 336

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 23/63 (36%)

Query: 402 MLEYAGSERGQVDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWG 461
            L + G+   +V T   +N+ HP  P  EDF +A +                   L  WG
Sbjct: 188 FLYFTGNTNARVVTSQTANYHHPHHPEFEDFGDAXLLGDNGATGYFRCDWFTPDGLSVWG 247

Query: 462 KSK 464
             +
Sbjct: 248 DGR 250


>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
           Synthase At 2.8 Angstroms Resolution
          Length = 429

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 378 AGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDL 417
           A  T+ +D+  +L PK Q R K    ++ G+  GQ+  D+
Sbjct: 1   ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDM 40


>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
           And L-Malate: Mechanistic Implications
 pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
           D-And L- Malate: Mechanistic Implications
 pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
           D-And L- Malate: Mechanistic Implications
 pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
           D-And L- Malate: Mechanistic Implications
 pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
           Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
           Complex With Oxaloacetate And Carboxymethyl Coenzyme A
 pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
           Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
           Complex With Oxaloacetate And Carboxymethyl Coenzyme A
 pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
           Synthase At 2.8 Angstroms Resolution
          Length = 433

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 378 AGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDL 417
           A  T+ +D+  +L PK Q R K    ++ G+  GQ+  D+
Sbjct: 1   ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDM 40


>pdb|3TQK|A Chain A, Structure Of Phospho-2-Dehydro-3-Deoxyheptonate Aldolase
           From Francisella Tularensis Schu S4
          Length = 346

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 294 IEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG 345
           I+K ++L+  +     I  L   T  E V K+R+E+ N+ H NDD +  V G
Sbjct: 7   IKKEKVLIPAEVLIQDIPLLK--TSFETVRKSRKEIANIIHGNDDRVAVVVG 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.126    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,025
Number of Sequences: 62578
Number of extensions: 345440
Number of successful extensions: 827
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 24
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)