BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046111
(520 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
SV=1
Length = 1004
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/523 (73%), Positives = 443/523 (84%), Gaps = 18/523 (3%)
Query: 1 MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
M VR GF+VAASIAA VK+LN+K S S KPS NGE G +K+Q PD
Sbjct: 1 MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGE---------GGDKEQSVDPD 47
Query: 61 GGLREK--KREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID 118
L +K + EEEEEEEEVKLI+S+ ++ RGS S+ D+DILPEFEDLLSGEIEY LP D
Sbjct: 48 YNLNDKNLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPDD 107
Query: 119 --KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVE 176
++AEK + YE EMA N ELERL+ LV EL+EREVKLEGELLEYYGLKEQESDIVE
Sbjct: 108 DNNLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVE 167
Query: 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLD 236
LQRQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+ V+KELEVARNKIKELQRQIQLD
Sbjct: 168 LQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLD 227
Query: 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296
ANQTKGQLLLLKQ VS LQ KEEEA+ KD E+E+KLK+V+DLEV+V+ELKRKN+ELQ EK
Sbjct: 228 ANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEK 287
Query: 297 RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEE 356
REL +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEE
Sbjct: 288 RELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEE 347
Query: 357 LVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTD 416
LVYLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTD
Sbjct: 348 LVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTD 407
Query: 417 LESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARS 476
LESN+S PSSPGS+DFDNAS+DSSTS++S+ SKKP LIQKLKKWGKSKDD+S SSP+RS
Sbjct: 408 LESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRS 467
Query: 477 ISGCSPSRMSMS-HRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
G SP R+S S ++ RGPLESLM+RN +SVAITTFG++DQE
Sbjct: 468 FYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 510
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 56/267 (20%)
Query: 40 EARFEQQQSQGKEKQQFTCPDGGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDI 99
+A +++S+ +QQ DG LREK+R +EE++ +SS + R +
Sbjct: 1621 QASIVKKRSEDDLRQQRDVLDGHLREKQR----TQEELRRLSSEVEALR--------RQL 1668
Query: 100 LPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNAR-------ELERLRSLVLELQE 152
L E E + + +N+ ++ + D +R E+ERL+SL L +
Sbjct: 1669 LQEQESVKQAHL-------------RNEHFQKAIEDKSRSLNESKIEIERLQSLTENLTK 1715
Query: 153 REVKLEGEL----LEY----YGLKEQESD----IVELQRQLKI---KTVEIDMLNITINS 197
+ LE EL LEY G E +SD I+EL+ QL+I +T+E+ L IN
Sbjct: 1716 EHLMLEEELRNLRLEYDDLRRGRSEADSDKNATILELRSQLQISNNRTLELQGL---IND 1772
Query: 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL---LLKQQVSGL 254
LQ ER+ L+++I + + K+ LE A N+I+E + Q + + L+ +L+Q + L
Sbjct: 1773 LQRERENLRQEIEK--FQKQALE-ASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARL 1829
Query: 255 QAKEEEAIKKDVELEKKLKSVKDLEVE 281
Q E+E + LE + + + LE E
Sbjct: 1830 QRLEDELNRAKSTLEAETRVKQRLECE 1856
>sp|Q70FJ1|AKAP9_MOUSE A-kinase anchor protein 9 OS=Mus musculus GN=Akap9 PE=2 SV=2
Length = 3797
Score = 35.4 bits (80), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 36/254 (14%)
Query: 133 MADNARELERLRSLVLELQEREVKLEGELLEYYG----------LKEQESDIVELQRQLK 182
+ D+ E +R + E Q + L+ EL E YG + + S I EL+ Q K
Sbjct: 388 LKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHK 447
Query: 183 --------------IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKE 228
I +++++N IN L +LQE AQ +K EL V +
Sbjct: 448 REMENTLKSDTNAAISKEQVNLMNAAINELNV---RLQETHAQKEELKGELGVVLGEKSA 504
Query: 229 LQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRK 288
LQ Q +N ++ L++QV + E + E K L +V+DL+ E+V
Sbjct: 505 LQSQ----SNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASES 560
Query: 289 NKELQIEKRELL----VKLDAAES-KIASLSNMTESEKVAKAREEVNNLRHANDDLLKQV 343
KEL+++ + +KL+ E K A L M ES++ R L ++L K
Sbjct: 561 RKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQPLFSHEEELSKLK 620
Query: 344 EGLQMNRFGEVEEL 357
E L++ +E+L
Sbjct: 621 EDLEVEHRINIEKL 634
>sp|O77819|ROCK1_RABIT Rho-associated protein kinase 1 OS=Oryctolagus cuniculus GN=ROCK1
PE=1 SV=1
Length = 1354
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 30/219 (13%)
Query: 130 ETEMADNARELERLRSLVLELQEREVKLEGELL----EYYGL----------KEQESDIV 175
TEM+ + +LE SL ELQER LE +YY L + +S+++
Sbjct: 568 HTEMSKSISQLE---SLNRELQERNRILENSKSQTDKDYYQLQAVLEAERRDRGHDSEMI 624
Query: 176 -ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN-KIKELQRQI 233
+LQ ++ E+ L + ++ ERK+ Q+ + S K LE+ N K+K LQ+++
Sbjct: 625 GDLQARITSLQEEVKHLKYNLERMEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL 684
Query: 234 QLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQ 293
+ + N+ K L + ++ + A+ E+EKKLK + K +N+ +Q
Sbjct: 685 EQEVNEHKVTKARLTDKHQSIEEAKSVAM---CEMEKKLKEER-----EAREKAENRVVQ 736
Query: 294 IEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNL 332
IEK+ ++ +D +S+ L ++TE+++ + +EV NL
Sbjct: 737 IEKQCSMLDVDLKQSQ-QKLEHLTENKE--RMEDEVKNL 772
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 56/267 (20%)
Query: 40 EARFEQQQSQGKEKQQFTCPDGGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDI 99
+A +++S+ +QQ DG +REK+R +EE++ +S + R +
Sbjct: 1633 QASIVKKRSEDDLRQQRDVLDGHVREKQR----TQEELRRLSLDVEALR--------RQL 1680
Query: 100 LPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNAR-------ELERLRSLVLELQE 152
+ E E++ + +N+ ++ + D +R E+ERL+SL L +
Sbjct: 1681 VQEQENVKQAHL-------------RNEHFQKAIEDKSRSLNESKIEIERLQSLTENLTK 1727
Query: 153 REVKLEGEL----LEYYGLK--------EQESDIVELQRQLKI---KTVEIDMLNITINS 197
+ LE EL LEY L+ ++ S I EL+ QL+I +T+E+ L IN
Sbjct: 1728 EHLMLEEELRNLRLEYDDLRRGRSEADSDKNSTISELRSQLQISNNRTLELQGL---IND 1784
Query: 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL---LLKQQVSGL 254
LQ ER+ L+++I + + K+ LE A N+I+E + Q + + L+ +L+Q + L
Sbjct: 1785 LQRERENLRQEIEK--FQKQALE-ASNRIQESKSQCTQVVQERESLLVKIKVLEQDKARL 1841
Query: 255 QAKEEEAIKKDVELEKKLKSVKDLEVE 281
Q E+E + LE + + + LE E
Sbjct: 1842 QRLEDELNRAKATLEAESRVKQRLECE 1868
>sp|Q7M6Z5|KIF27_RAT Kinesin-like protein KIF27 OS=Rattus norvegicus GN=Kif27 PE=2 SV=1
Length = 1394
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 9/68 (13%)
Query: 192 NITINSLQAERKKLQEQIA--QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLK- 248
++T+ L+ E KK Q +A Q + +KELE ++EL+RQ+QL A ++KG + LK
Sbjct: 472 HVTVLQLKRELKKYQCALAADQVVFTQKELE-----LEELRRQMQLMAQESKGHAVSLKE 526
Query: 249 -QQVSGLQ 255
Q+V+ LQ
Sbjct: 527 AQKVNRLQ 534
>sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens GN=CGNL1 PE=1 SV=2
Length = 1302
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 56/253 (22%)
Query: 132 EMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDML 191
EMAD +E R+ LELQ +L EY ++ ++ E+QRQLK KT+E +
Sbjct: 956 EMADI---VEASRTSTLELQ-------NQLDEYK--EKNRRELAEMQRQLKEKTLEAEKS 1003
Query: 192 NITINSLQAERKKLQEQIAQSSYVKKELEVAR----NKIKELQRQIQLDANQTKGQLLLL 247
+T +Q E + ++E++ + E R +K+L+ +++ ++ + L+
Sbjct: 1004 RLTAMKMQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHLKDDRSRLV 1063
Query: 248 KQ---QVSGLQAK-EEEAIKKDV-----------------ELEKKLKSVKDLEVEVVELK 286
KQ +VS L+ + EEE D+ EL ++ + +DLE + + L+
Sbjct: 1064 KQMEDKVSQLEMELEEERNNSDLLSERISRSREQMEQLRNELLQERAARQDLECDKISLE 1123
Query: 287 RKNKELQIE-----------KRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHA 335
R+NK+L+ K L+V+++A +IA L + ESE+ +A NL+ +
Sbjct: 1124 RQNKDLKSRIIHLEGSYRSSKEGLVVQMEA---RIAELEDRLESEERDRA-----NLQLS 1175
Query: 336 NDDLLKQVEGLQM 348
N L ++V+ L M
Sbjct: 1176 NRRLERKVKELVM 1188
>sp|O29230|RAD50_ARCFU DNA double-strand break repair Rad50 ATPase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rad50 PE=3 SV=1
Length = 886
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235
+++RQ + K EI+ ++ I S+++ R+KL E++ KELE +++++ L++Q
Sbjct: 184 QIKRQKEEKKAEIERISEEIKSIESLREKLSEEVRNLESRLKELEEHKSRLESLRKQESS 243
Query: 236 DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDL 278
+ +G L++++ L+ + +E +++ +LEKK K VK+L
Sbjct: 244 VLQEVRG----LEEKLRELEKQLKEVVERIEDLEKKAKEVKEL 282
>sp|P32380|SP110_YEAST Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPC110 PE=1 SV=1
Length = 944
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 25/178 (14%)
Query: 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI-- 233
E+ QLK K E L +N L+ K E +QSS + EL++ +NKI EL+ +I
Sbjct: 315 EMDLQLKQKQNESKRLKDELNELET---KFSENGSQSSAKENELKMLKNKIAELEEEIST 371
Query: 234 ---QLDANQTKGQLLL---------LKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEV- 280
QL A + K L+ L Q+ S L ++EEE K + +L+K ++ ++ V
Sbjct: 372 KNSQLIAKEGKLASLMAQLTQLESKLNQRDSQLGSREEELKKTNDKLQKDIRIAREETVS 431
Query: 281 ---EVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHA 335
+++L++K K Q+E ++K +ESK + + + +K+ K E N+L+ A
Sbjct: 432 KDERIIDLQKKVK--QLENDLFVIKKTHSESKTITDNELESKDKLIKILE--NDLKVA 485
>sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens
GN=GCC2 PE=1 SV=4
Length = 1684
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 163 EYYGLKEQE-SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221
E+ +K+Q+ SD+ ELQ++L+ E D L T+N LQ E +KL ++Q V ELE
Sbjct: 504 EFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKL---LSQQELV-PELE- 558
Query: 222 ARNKIKELQ 230
N IK LQ
Sbjct: 559 --NTIKNLQ 565
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.126 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,357,189
Number of Sequences: 539616
Number of extensions: 7923721
Number of successful extensions: 64893
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 3798
Number of HSP's that attempted gapping in prelim test: 48787
Number of HSP's gapped (non-prelim): 12159
length of query: 520
length of database: 191,569,459
effective HSP length: 122
effective length of query: 398
effective length of database: 125,736,307
effective search space: 50043050186
effective search space used: 50043050186
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)