Query 046111
Match_columns 520
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.6 0.054 1.2E-06 62.2 29.3 12 394-406 556-567 (1164)
2 PHA02562 46 endonuclease subun 97.6 0.038 8.3E-07 59.3 26.6 89 137-227 180-268 (562)
3 KOG0996 Structural maintenance 97.6 0.017 3.6E-07 68.3 24.9 212 135-356 782-1019(1293)
4 TIGR02168 SMC_prok_B chromosom 97.5 0.19 4.2E-06 57.4 31.6 6 9-14 41-46 (1179)
5 TIGR02168 SMC_prok_B chromosom 97.5 0.13 2.9E-06 58.8 30.2 49 326-374 886-934 (1179)
6 TIGR02169 SMC_prok_A chromosom 97.4 0.27 5.9E-06 56.6 31.2 11 326-336 964-974 (1164)
7 PRK02224 chromosome segregatio 97.4 0.065 1.4E-06 61.0 25.5 99 136-234 480-582 (880)
8 PRK03918 chromosome segregatio 97.4 0.13 2.9E-06 58.2 27.9 46 268-313 607-652 (880)
9 COG1196 Smc Chromosome segrega 97.4 0.14 3E-06 61.0 28.8 63 275-349 837-899 (1163)
10 KOG0971 Microtubule-associated 97.4 0.085 1.8E-06 61.4 25.7 145 151-301 324-493 (1243)
11 KOG0977 Nuclear envelope prote 97.3 0.033 7.1E-07 61.8 21.6 225 136-375 111-383 (546)
12 PRK03918 chromosome segregatio 97.3 0.14 3.1E-06 58.1 27.3 120 137-259 161-283 (880)
13 COG1196 Smc Chromosome segrega 97.3 0.18 4E-06 60.0 28.9 13 471-483 646-658 (1163)
14 TIGR00606 rad50 rad50. This fa 97.3 0.13 2.8E-06 61.9 27.7 68 141-212 795-862 (1311)
15 KOG4673 Transcription factor T 97.3 0.11 2.3E-06 59.3 24.7 142 170-312 472-630 (961)
16 KOG0980 Actin-binding protein 97.2 0.36 7.7E-06 56.3 28.2 102 169-274 355-456 (980)
17 KOG0982 Centrosomal protein Nu 97.2 0.1 2.2E-06 56.7 22.6 178 137-350 249-433 (502)
18 KOG4643 Uncharacterized coiled 97.1 0.055 1.2E-06 63.4 21.0 153 143-302 175-337 (1195)
19 PF05667 DUF812: Protein of un 97.1 0.084 1.8E-06 59.2 21.7 95 264-360 438-541 (594)
20 PF09726 Macoilin: Transmembra 97.0 0.23 4.9E-06 56.8 25.2 170 134-315 421-608 (697)
21 PRK02224 chromosome segregatio 97.0 0.35 7.6E-06 55.2 26.5 25 137-161 212-236 (880)
22 PF04849 HAP1_N: HAP1 N-termin 97.0 0.043 9.3E-07 57.1 17.4 178 136-336 102-306 (306)
23 KOG0161 Myosin class II heavy 97.0 0.35 7.5E-06 60.6 27.3 166 134-308 904-1076(1930)
24 TIGR00606 rad50 rad50. This fa 96.9 0.37 7.9E-06 58.2 26.5 122 189-310 795-925 (1311)
25 PRK11637 AmiB activator; Provi 96.8 0.87 1.9E-05 48.4 26.4 68 276-348 187-254 (428)
26 KOG0161 Myosin class II heavy 96.8 0.67 1.5E-05 58.2 27.8 129 177-308 990-1118(1930)
27 PF12718 Tropomyosin_1: Tropom 96.8 0.14 3.1E-06 47.6 17.1 119 171-310 20-138 (143)
28 KOG0250 DNA repair protein RAD 96.7 0.37 8E-06 57.1 23.6 154 134-287 664-839 (1074)
29 PF07888 CALCOCO1: Calcium bin 96.7 1.5 3.3E-05 49.1 28.2 23 139-161 158-180 (546)
30 PHA02562 46 endonuclease subun 96.7 0.27 5.8E-06 52.9 21.0 47 264-310 349-395 (562)
31 COG1579 Zn-ribbon protein, pos 96.7 0.53 1.1E-05 47.7 21.6 112 177-310 29-140 (239)
32 PF10174 Cast: RIM-binding pro 96.7 1.1 2.5E-05 51.9 26.8 172 172-347 343-541 (775)
33 PRK01156 chromosome segregatio 96.6 2.1 4.6E-05 49.3 29.2 88 133-222 471-558 (895)
34 COG1579 Zn-ribbon protein, pos 96.6 0.71 1.5E-05 46.8 21.8 28 277-304 146-173 (239)
35 PF07888 CALCOCO1: Calcium bin 96.5 1.7 3.8E-05 48.7 26.3 68 172-242 171-238 (546)
36 PF05557 MAD: Mitotic checkpoi 96.4 0.0064 1.4E-07 68.5 7.1 212 136-349 362-588 (722)
37 PRK01156 chromosome segregatio 96.4 2.7 5.9E-05 48.5 30.0 58 128-185 473-535 (895)
38 KOG0976 Rho/Rac1-interacting s 96.4 1.3 2.7E-05 51.8 24.5 66 125-190 86-166 (1265)
39 PF08317 Spc7: Spc7 kinetochor 96.4 1.6 3.4E-05 45.3 26.0 58 265-322 222-279 (325)
40 PRK04863 mukB cell division pr 96.1 2.8 6E-05 52.0 27.4 163 138-306 307-475 (1486)
41 PRK04863 mukB cell division pr 96.1 3.8 8.1E-05 50.9 28.4 82 177-258 381-472 (1486)
42 KOG0977 Nuclear envelope prote 96.1 0.74 1.6E-05 51.5 20.6 117 190-306 53-195 (546)
43 PRK09039 hypothetical protein; 96.1 0.41 8.8E-06 50.2 17.6 102 185-306 80-184 (343)
44 PF05557 MAD: Mitotic checkpoi 96.1 0.0016 3.4E-08 73.2 0.0 230 136-371 190-429 (722)
45 KOG0963 Transcription factor/C 95.9 2.3 5.1E-05 48.2 23.5 134 147-287 120-263 (629)
46 PF09726 Macoilin: Transmembra 95.9 2.4 5.1E-05 48.8 24.1 166 129-304 423-611 (697)
47 KOG0250 DNA repair protein RAD 95.9 4.9 0.00011 48.2 26.8 121 215-350 335-466 (1074)
48 PF14662 CCDC155: Coiled-coil 95.8 2.2 4.8E-05 42.2 23.3 117 185-304 66-189 (193)
49 PF08317 Spc7: Spc7 kinetochor 95.8 0.37 8E-06 49.8 15.8 114 140-256 172-290 (325)
50 COG4942 Membrane-bound metallo 95.8 3.8 8.3E-05 44.8 25.7 83 135-223 42-125 (420)
51 PF05622 HOOK: HOOK protein; 95.8 0.0026 5.6E-08 71.6 0.0 227 137-374 238-507 (713)
52 PF12128 DUF3584: Protein of u 95.8 5.9 0.00013 47.9 27.6 76 129-210 598-673 (1201)
53 PF00038 Filament: Intermediat 95.7 2.8 6E-05 42.3 28.6 114 224-345 169-287 (312)
54 PF09789 DUF2353: Uncharacteri 95.7 2.2 4.7E-05 45.1 20.7 128 131-258 16-177 (319)
55 smart00787 Spc7 Spc7 kinetocho 95.7 0.42 9.1E-06 49.8 15.6 116 138-256 165-285 (312)
56 PF06818 Fez1: Fez1; InterPro 95.6 1.6 3.4E-05 43.5 18.6 79 134-212 27-106 (202)
57 PLN03188 kinesin-12 family pro 95.6 3.6 7.8E-05 50.1 24.3 66 279-356 1172-1247(1320)
58 PF12325 TMF_TATA_bd: TATA ele 95.5 0.66 1.4E-05 42.5 14.4 78 172-249 16-93 (120)
59 KOG1937 Uncharacterized conser 95.5 4.5 9.7E-05 44.8 22.9 158 172-343 345-518 (521)
60 PRK11637 AmiB activator; Provi 95.4 4.6 9.9E-05 43.1 25.9 77 136-218 52-128 (428)
61 PF13851 GAS: Growth-arrest sp 95.3 3.2 7E-05 40.6 23.5 146 133-311 22-167 (201)
62 PF09755 DUF2046: Uncharacteri 95.3 4.8 0.0001 42.5 22.6 21 141-161 23-43 (310)
63 KOG4674 Uncharacterized conser 95.3 11 0.00023 47.8 27.6 109 138-259 1236-1363(1822)
64 PF00261 Tropomyosin: Tropomyo 95.2 2.9 6.3E-05 41.4 19.2 63 274-348 156-218 (237)
65 KOG0612 Rho-associated, coiled 95.2 7.8 0.00017 47.2 25.4 81 142-222 469-551 (1317)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 2.5 5.5E-05 38.5 18.2 84 205-305 47-130 (132)
67 KOG0612 Rho-associated, coiled 95.0 2.6 5.7E-05 51.0 20.9 80 277-356 578-665 (1317)
68 PF05622 HOOK: HOOK protein; 95.0 0.0065 1.4E-07 68.4 0.0 175 189-368 242-425 (713)
69 PF09755 DUF2046: Uncharacteri 94.9 4.2 9.1E-05 42.9 20.1 74 280-362 106-184 (310)
70 PF15070 GOLGA2L5: Putative go 94.9 7 0.00015 44.5 23.3 31 133-163 31-61 (617)
71 KOG0982 Centrosomal protein Nu 94.8 2.5 5.4E-05 46.4 18.6 145 149-303 289-433 (502)
72 KOG0971 Microtubule-associated 94.8 12 0.00026 44.7 29.1 164 143-306 229-443 (1243)
73 PRK09039 hypothetical protein; 94.8 1.5 3.2E-05 46.2 16.6 96 133-231 76-172 (343)
74 PF13851 GAS: Growth-arrest sp 94.8 1.7 3.7E-05 42.5 16.1 119 161-307 14-134 (201)
75 PF15070 GOLGA2L5: Putative go 94.7 10 0.00022 43.4 24.7 50 191-240 85-138 (617)
76 KOG4643 Uncharacterized coiled 94.6 1.6 3.4E-05 52.0 17.5 20 278-297 299-318 (1195)
77 KOG0979 Structural maintenance 94.6 4.3 9.4E-05 48.4 21.0 43 165-207 181-223 (1072)
78 TIGR02680 conserved hypothetic 94.6 11 0.00024 46.4 25.3 18 140-157 744-761 (1353)
79 PF11365 DUF3166: Protein of u 94.6 0.14 3.1E-06 45.4 7.2 91 174-297 3-93 (96)
80 PF00261 Tropomyosin: Tropomyo 94.4 5.8 0.00013 39.3 27.2 217 141-371 4-227 (237)
81 TIGR03007 pepcterm_ChnLen poly 94.2 9.7 0.00021 40.9 22.5 73 276-350 313-385 (498)
82 PF05667 DUF812: Protein of un 94.1 7.5 0.00016 44.1 21.1 164 175-348 345-519 (594)
83 TIGR03007 pepcterm_ChnLen poly 94.1 7.1 0.00015 42.0 20.2 19 349-367 361-379 (498)
84 PF07111 HCR: Alpha helical co 94.1 15 0.00032 42.7 26.0 188 185-402 100-308 (739)
85 KOG0978 E3 ubiquitin ligase in 93.8 16 0.00035 42.4 27.2 173 137-309 399-588 (698)
86 PF10174 Cast: RIM-binding pro 93.8 17 0.00038 42.6 27.5 101 212-312 324-424 (775)
87 PF15254 CCDC14: Coiled-coil d 93.6 2.7 5.9E-05 48.9 16.4 66 185-253 419-484 (861)
88 TIGR01005 eps_transp_fam exopo 93.4 17 0.00038 41.4 23.3 56 255-310 351-406 (754)
89 PRK04778 septation ring format 93.3 16 0.00035 40.8 23.7 83 173-257 257-339 (569)
90 KOG1029 Endocytic adaptor prot 93.2 11 0.00023 44.4 20.4 35 267-301 557-591 (1118)
91 PF05483 SCP-1: Synaptonemal c 93.2 21 0.00045 41.6 24.4 166 139-304 423-625 (786)
92 KOG0933 Structural maintenance 93.2 16 0.00034 44.1 22.0 176 137-314 754-940 (1174)
93 COG0419 SbcC ATPase involved i 93.0 23 0.00049 41.6 27.8 73 143-215 230-303 (908)
94 PF09789 DUF2353: Uncharacteri 93.0 12 0.00027 39.6 19.2 88 174-261 11-119 (319)
95 PRK04778 septation ring format 92.8 19 0.00041 40.2 26.4 53 321-375 477-534 (569)
96 COG4942 Membrane-bound metallo 92.8 18 0.00039 39.8 22.7 30 271-300 159-188 (420)
97 KOG0995 Centromere-associated 92.8 18 0.00039 41.1 20.9 58 174-231 215-273 (581)
98 KOG1029 Endocytic adaptor prot 92.7 15 0.00033 43.3 20.6 163 137-308 326-521 (1118)
99 TIGR01005 eps_transp_fam exopo 92.6 11 0.00025 42.8 19.8 26 324-349 380-405 (754)
100 PF09730 BicD: Microtubule-ass 92.6 18 0.00038 42.2 21.1 130 163-306 18-147 (717)
101 TIGR01000 bacteriocin_acc bact 92.5 16 0.00034 39.4 19.8 24 289-312 238-261 (457)
102 COG2433 Uncharacterized conser 92.5 1.5 3.4E-05 49.6 12.4 73 181-257 417-489 (652)
103 KOG4593 Mitotic checkpoint pro 92.4 26 0.00056 40.7 27.6 189 126-314 93-302 (716)
104 PF10186 Atg14: UV radiation r 92.4 12 0.00026 36.8 18.7 27 188-214 22-48 (302)
105 PF04111 APG6: Autophagy prote 92.4 2.6 5.7E-05 43.8 13.3 33 278-310 90-122 (314)
106 KOG4674 Uncharacterized conser 92.4 42 0.0009 42.9 28.9 27 339-365 1481-1507(1822)
107 PF06785 UPF0242: Uncharacteri 92.1 7 0.00015 42.0 16.0 117 140-259 84-201 (401)
108 PF14662 CCDC155: Coiled-coil 92.1 14 0.0003 36.8 18.0 22 191-212 6-27 (193)
109 PF10168 Nup88: Nuclear pore c 92.0 9.6 0.00021 44.1 18.3 68 170-240 556-623 (717)
110 PF04156 IncA: IncA protein; 91.9 11 0.00024 35.6 15.8 101 173-304 82-182 (191)
111 KOG0946 ER-Golgi vesicle-tethe 91.8 29 0.00064 41.1 21.6 85 259-348 813-899 (970)
112 PF15619 Lebercilin: Ciliary p 91.5 15 0.00033 36.1 20.6 20 322-341 166-185 (194)
113 PF06548 Kinesin-related: Kine 91.4 27 0.00059 38.8 20.0 77 279-357 402-478 (488)
114 KOG0996 Structural maintenance 91.3 44 0.00095 41.1 27.5 28 325-352 505-532 (1293)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.3 11 0.00025 34.3 15.3 71 275-346 61-131 (132)
116 KOG0946 ER-Golgi vesicle-tethe 91.3 34 0.00074 40.6 21.4 46 164-209 662-708 (970)
117 KOG4360 Uncharacterized coiled 91.1 9.8 0.00021 42.8 16.4 100 140-240 106-228 (596)
118 smart00787 Spc7 Spc7 kinetocho 91.0 23 0.00049 37.2 26.7 55 263-317 215-269 (312)
119 KOG0249 LAR-interacting protei 91.0 16 0.00034 42.8 18.2 91 130-227 97-187 (916)
120 KOG0239 Kinesin (KAR3 subfamil 90.8 17 0.00037 41.9 18.7 112 168-307 178-289 (670)
121 PF15619 Lebercilin: Ciliary p 90.8 18 0.00039 35.6 23.5 29 230-258 56-84 (194)
122 PF08614 ATG16: Autophagy prot 90.7 1.7 3.7E-05 41.8 9.3 42 268-309 125-166 (194)
123 KOG0999 Microtubule-associated 90.7 16 0.00034 41.8 17.5 174 134-310 145-348 (772)
124 PF10226 DUF2216: Uncharacteri 90.6 7.6 0.00017 38.6 13.6 93 173-292 42-134 (195)
125 KOG0963 Transcription factor/C 90.6 38 0.00082 39.0 23.4 101 142-242 142-267 (629)
126 TIGR03017 EpsF chain length de 90.5 26 0.00056 37.0 20.3 26 140-165 173-198 (444)
127 PF01486 K-box: K-box region; 90.5 1.1 2.4E-05 38.8 7.1 74 134-211 15-100 (100)
128 PF09730 BicD: Microtubule-ass 90.4 42 0.0009 39.3 29.9 57 202-258 358-414 (717)
129 COG2433 Uncharacterized conser 90.3 4.8 0.0001 45.9 13.4 91 132-228 416-509 (652)
130 KOG0995 Centromere-associated 90.2 38 0.00083 38.6 29.2 64 147-210 261-325 (581)
131 PF10211 Ax_dynein_light: Axon 90.1 5.4 0.00012 38.8 12.2 67 276-346 123-189 (189)
132 PRK12704 phosphodiesterase; Pr 90.1 36 0.00078 38.1 20.0 93 222-320 62-154 (520)
133 COG0419 SbcC ATPase involved i 90.1 46 0.00099 39.2 27.8 9 339-347 731-739 (908)
134 KOG0243 Kinesin-like protein [ 89.9 29 0.00064 42.0 19.8 150 133-307 406-559 (1041)
135 PF00038 Filament: Intermediat 89.4 26 0.00056 35.4 26.4 73 140-212 13-87 (312)
136 KOG0933 Structural maintenance 89.4 59 0.0013 39.6 29.9 68 129-196 665-732 (1174)
137 PF15294 Leu_zip: Leucine zipp 89.3 13 0.00027 38.9 14.6 133 188-333 127-273 (278)
138 PRK10884 SH3 domain-containing 89.0 8.6 0.00019 38.1 12.8 44 188-234 127-170 (206)
139 KOG4673 Transcription factor T 89.0 54 0.0012 38.6 23.8 18 136-153 344-361 (961)
140 PF15035 Rootletin: Ciliary ro 88.8 0.59 1.3E-05 45.4 4.5 105 249-359 16-120 (182)
141 PF10473 CENP-F_leu_zip: Leuci 88.6 22 0.00048 33.6 18.1 112 175-299 6-120 (140)
142 PF05701 WEMBL: Weak chloropla 88.4 46 0.001 37.0 26.5 36 165-200 228-263 (522)
143 COG3883 Uncharacterized protei 88.4 35 0.00075 35.5 20.0 55 181-238 54-108 (265)
144 TIGR03319 YmdA_YtgF conserved 88.3 48 0.001 37.1 20.0 15 306-320 134-148 (514)
145 PF12128 DUF3584: Protein of u 88.2 71 0.0015 39.0 27.7 64 174-237 308-372 (1201)
146 PF05701 WEMBL: Weak chloropla 88.1 49 0.0011 36.9 26.3 51 174-224 213-263 (522)
147 PF06632 XRCC4: DNA double-str 88.0 8.3 0.00018 41.0 12.7 58 195-258 153-210 (342)
148 KOG0978 E3 ubiquitin ligase in 87.9 61 0.0013 37.9 23.3 146 162-307 461-621 (698)
149 COG5185 HEC1 Protein involved 87.9 53 0.0011 37.1 23.7 189 173-369 331-577 (622)
150 PF11559 ADIP: Afadin- and alp 87.8 22 0.00048 32.6 17.0 24 218-241 88-111 (151)
151 PF05483 SCP-1: Synaptonemal c 87.5 65 0.0014 37.7 25.3 104 263-369 388-497 (786)
152 PF09787 Golgin_A5: Golgin sub 87.5 51 0.0011 36.5 21.9 54 324-378 410-465 (511)
153 PF13870 DUF4201: Domain of un 87.3 27 0.00058 33.0 20.5 155 136-294 4-173 (177)
154 KOG4809 Rab6 GTPase-interactin 87.0 39 0.00084 38.6 17.4 143 193-351 313-462 (654)
155 KOG0018 Structural maintenance 86.7 40 0.00086 41.0 18.2 42 193-234 652-693 (1141)
156 KOG3091 Nuclear pore complex, 86.6 26 0.00056 39.3 15.7 110 174-298 336-446 (508)
157 KOG0249 LAR-interacting protei 86.3 21 0.00046 41.8 15.3 70 151-223 69-141 (916)
158 TIGR01000 bacteriocin_acc bact 86.2 54 0.0012 35.4 20.4 27 136-162 95-121 (457)
159 PRK10361 DNA recombination pro 86.1 63 0.0014 36.2 21.2 29 276-304 168-196 (475)
160 PF12718 Tropomyosin_1: Tropom 86.0 30 0.00065 32.4 18.9 37 274-310 81-117 (143)
161 PLN02939 transferase, transfer 85.7 73 0.0016 38.6 19.8 154 137-297 225-400 (977)
162 TIGR00634 recN DNA repair prot 85.5 66 0.0014 35.8 18.9 170 137-306 174-372 (563)
163 PF05700 BCAS2: Breast carcino 84.9 43 0.00093 33.2 18.0 59 97-166 63-130 (221)
164 KOG0976 Rho/Rac1-interacting s 84.7 99 0.0021 37.2 25.6 145 151-298 231-393 (1265)
165 PF00769 ERM: Ezrin/radixin/mo 84.7 36 0.00079 34.4 14.7 70 276-357 57-126 (246)
166 KOG4001 Axonemal dynein light 84.3 11 0.00024 38.2 10.6 64 278-346 190-254 (259)
167 PF10498 IFT57: Intra-flagella 84.0 28 0.00061 37.3 14.3 128 153-285 216-347 (359)
168 PF06160 EzrA: Septation ring 84.0 79 0.0017 35.5 24.5 218 133-364 110-350 (560)
169 PF06005 DUF904: Protein of un 83.8 17 0.00037 30.7 10.1 60 174-233 6-69 (72)
170 PF15035 Rootletin: Ciliary ro 83.7 46 0.001 32.5 16.8 150 136-295 14-163 (182)
171 TIGR01843 type_I_hlyD type I s 83.6 57 0.0012 33.6 21.7 29 135-163 78-106 (423)
172 PRK10884 SH3 domain-containing 83.4 17 0.00037 36.1 11.6 17 282-298 134-150 (206)
173 PF05278 PEARLI-4: Arabidopsis 82.9 65 0.0014 33.7 16.2 121 188-309 128-257 (269)
174 PF10186 Atg14: UV radiation r 82.9 51 0.0011 32.5 19.3 25 140-164 22-46 (302)
175 PF07106 TBPIP: Tat binding pr 82.8 18 0.00039 33.9 11.1 83 276-368 75-163 (169)
176 PF07798 DUF1640: Protein of u 82.8 30 0.00066 33.0 12.7 33 216-248 119-151 (177)
177 TIGR00634 recN DNA repair prot 82.5 88 0.0019 34.9 21.6 79 276-356 304-382 (563)
178 PF06160 EzrA: Septation ring 82.5 90 0.002 35.1 20.8 69 278-346 449-522 (560)
179 PRK00106 hypothetical protein; 82.3 96 0.0021 35.2 22.5 37 284-320 133-169 (535)
180 PF04859 DUF641: Plant protein 82.2 2.2 4.8E-05 39.8 4.7 38 171-208 93-130 (131)
181 PF07106 TBPIP: Tat binding pr 82.2 13 0.00028 34.9 9.8 64 133-200 74-137 (169)
182 KOG0979 Structural maintenance 82.2 1.3E+02 0.0028 36.7 23.2 32 130-161 166-197 (1072)
183 PRK11281 hypothetical protein; 81.5 1.4E+02 0.0031 36.7 25.4 28 137-164 79-106 (1113)
184 PF04111 APG6: Autophagy prote 81.5 30 0.00065 36.2 13.1 32 276-307 102-133 (314)
185 KOG4196 bZIP transcription fac 80.9 16 0.00034 34.6 9.6 81 224-311 32-112 (135)
186 KOG4302 Microtubule-associated 80.9 1.2E+02 0.0025 35.5 18.4 85 275-363 235-319 (660)
187 KOG1003 Actin filament-coating 80.8 66 0.0014 32.4 19.7 37 185-221 3-39 (205)
188 PF09787 Golgin_A5: Golgin sub 80.8 98 0.0021 34.4 23.8 25 133-157 118-143 (511)
189 PF01576 Myosin_tail_1: Myosin 80.8 0.5 1.1E-05 55.1 0.0 36 273-308 419-454 (859)
190 PF05911 DUF869: Plant protein 80.6 1.3E+02 0.0028 35.7 22.7 126 182-308 585-715 (769)
191 KOG0243 Kinesin-like protein [ 80.3 1.5E+02 0.0033 36.3 24.5 84 175-258 479-562 (1041)
192 TIGR02680 conserved hypothetic 80.2 1.7E+02 0.0036 36.6 29.6 35 133-167 225-259 (1353)
193 PRK15422 septal ring assembly 80.1 19 0.00041 31.4 9.2 45 174-218 6-50 (79)
194 KOG0804 Cytoplasmic Zn-finger 79.3 60 0.0013 36.3 14.8 40 212-251 405-444 (493)
195 PF01576 Myosin_tail_1: Myosin 79.3 0.61 1.3E-05 54.4 0.0 98 129-226 354-466 (859)
196 COG1340 Uncharacterized archae 79.2 91 0.002 33.0 27.1 41 126-166 36-76 (294)
197 PF08614 ATG16: Autophagy prot 78.6 22 0.00048 34.3 10.4 41 174-214 104-144 (194)
198 TIGR01843 type_I_hlyD type I s 78.6 85 0.0018 32.3 23.3 18 134-151 84-101 (423)
199 PF15397 DUF4618: Domain of un 78.2 90 0.002 32.4 22.3 34 326-360 199-232 (258)
200 KOG1853 LIS1-interacting prote 77.7 98 0.0021 32.6 20.7 33 278-310 110-142 (333)
201 PRK09343 prefoldin subunit bet 77.0 58 0.0013 29.6 12.6 47 177-223 5-51 (121)
202 KOG1937 Uncharacterized conser 76.4 1.4E+02 0.003 33.7 23.5 45 137-181 230-274 (521)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 76.1 72 0.0016 30.7 12.9 23 220-242 85-107 (158)
204 PRK11281 hypothetical protein; 75.8 1.6E+02 0.0034 36.4 18.4 23 190-212 125-147 (1113)
205 KOG0962 DNA repair protein RAD 75.4 2.3E+02 0.0049 35.6 22.0 112 119-240 173-284 (1294)
206 PF04849 HAP1_N: HAP1 N-termin 75.1 1.2E+02 0.0026 32.3 18.7 93 137-239 159-256 (306)
207 PF12325 TMF_TATA_bd: TATA ele 75.1 39 0.00084 31.2 10.3 96 186-288 16-111 (120)
208 KOG0239 Kinesin (KAR3 subfamil 75.0 1.6E+02 0.0034 34.4 17.4 47 347-396 374-426 (670)
209 PF15290 Syntaphilin: Golgi-lo 74.8 41 0.00089 35.5 11.6 77 128-234 58-134 (305)
210 KOG0964 Structural maintenance 74.4 2.2E+02 0.0048 35.0 21.7 144 164-310 670-822 (1200)
211 KOG0288 WD40 repeat protein Ti 74.3 1.4E+02 0.0031 33.2 15.9 65 143-213 4-68 (459)
212 PF06818 Fez1: Fez1; InterPro 74.2 1E+02 0.0022 31.1 15.5 144 211-361 32-180 (202)
213 PF00769 ERM: Ezrin/radixin/mo 73.4 1.1E+02 0.0024 31.0 15.8 15 194-208 34-48 (246)
214 PF05266 DUF724: Protein of un 73.1 72 0.0016 31.4 12.4 23 275-297 133-155 (190)
215 TIGR01010 BexC_CtrB_KpsE polys 73.0 1.2E+02 0.0027 31.5 16.4 60 171-230 169-234 (362)
216 COG3883 Uncharacterized protei 72.9 1.3E+02 0.0027 31.5 19.9 82 167-258 33-114 (265)
217 PF14197 Cep57_CLD_2: Centroso 72.3 33 0.00072 28.7 8.5 50 186-238 12-61 (69)
218 PF05911 DUF869: Plant protein 71.9 1.7E+02 0.0038 34.7 16.9 109 174-285 591-713 (769)
219 TIGR03545 conserved hypothetic 71.6 29 0.00063 39.2 10.5 66 185-250 190-259 (555)
220 PF05266 DUF724: Protein of un 71.6 88 0.0019 30.8 12.6 67 186-252 110-176 (190)
221 KOG2129 Uncharacterized conser 71.2 1.5E+02 0.0032 33.3 15.1 184 189-389 46-240 (552)
222 TIGR02132 phaR_Bmeg polyhydrox 70.4 95 0.0021 31.0 12.3 101 137-251 71-173 (189)
223 PRK11519 tyrosine kinase; Prov 70.1 1.8E+02 0.0038 33.7 16.4 41 268-308 358-398 (719)
224 KOG0999 Microtubule-associated 69.9 2.2E+02 0.0048 33.1 25.3 168 174-364 52-227 (772)
225 PRK10869 recombination and rep 69.8 2E+02 0.0043 32.5 22.8 172 138-309 171-370 (553)
226 TIGR03752 conj_TIGR03752 integ 69.6 14 0.0003 41.1 7.3 49 262-310 55-103 (472)
227 COG4913 Uncharacterized protei 69.6 2.1E+02 0.0045 34.4 16.4 30 127-157 606-635 (1104)
228 PRK09841 cryptic autophosphory 69.6 1.4E+02 0.0031 34.4 15.6 41 268-308 358-398 (726)
229 PF13514 AAA_27: AAA domain 69.6 2.7E+02 0.0057 33.9 24.3 50 271-320 344-393 (1111)
230 COG4372 Uncharacterized protei 69.5 1.9E+02 0.0041 32.2 19.4 16 10-25 12-27 (499)
231 PF10168 Nup88: Nuclear pore c 69.0 2.4E+02 0.0052 33.2 17.5 17 330-346 692-708 (717)
232 PF11559 ADIP: Afadin- and alp 68.4 98 0.0021 28.4 13.9 51 185-238 65-115 (151)
233 PF07058 Myosin_HC-like: Myosi 68.2 44 0.00096 35.7 10.2 81 223-317 6-96 (351)
234 PF13874 Nup54: Nucleoporin co 67.8 44 0.00095 30.9 9.2 81 175-262 33-113 (141)
235 COG4026 Uncharacterized protei 67.8 69 0.0015 33.2 11.1 25 275-299 158-182 (290)
236 TIGR03185 DNA_S_dndD DNA sulfu 67.6 2.3E+02 0.0049 32.3 27.1 26 281-306 392-417 (650)
237 PF10482 CtIP_N: Tumour-suppre 67.6 47 0.001 30.9 9.1 47 136-182 12-66 (120)
238 PF15254 CCDC14: Coiled-coil d 67.2 2.8E+02 0.0061 33.3 19.1 149 137-301 393-557 (861)
239 KOG0804 Cytoplasmic Zn-finger 66.9 2.2E+02 0.0048 32.1 15.4 19 288-306 436-454 (493)
240 PF06632 XRCC4: DNA double-str 66.5 41 0.00089 36.0 9.8 26 213-238 183-208 (342)
241 PF03962 Mnd1: Mnd1 family; I 66.2 98 0.0021 30.2 11.6 40 211-250 104-143 (188)
242 KOG1962 B-cell receptor-associ 66.2 81 0.0018 32.0 11.2 31 267-297 166-196 (216)
243 PF04094 DUF390: Protein of un 65.6 89 0.0019 36.9 12.7 45 297-346 641-689 (828)
244 PF07407 Seadorna_VP6: Seadorn 65.3 6.7 0.00015 42.0 3.7 26 326-351 38-63 (420)
245 PF14197 Cep57_CLD_2: Centroso 65.0 83 0.0018 26.4 9.6 58 171-228 4-65 (69)
246 TIGR01010 BexC_CtrB_KpsE polys 64.9 1.4E+02 0.003 31.1 13.2 87 140-237 172-262 (362)
247 KOG1899 LAR transmembrane tyro 64.4 1.4E+02 0.0031 34.9 13.8 109 187-312 105-213 (861)
248 PF06156 DUF972: Protein of un 64.3 32 0.0007 31.0 7.3 48 173-220 9-56 (107)
249 PF11365 DUF3166: Protein of u 63.9 27 0.00058 31.3 6.6 30 213-242 4-33 (96)
250 TIGR02338 gimC_beta prefoldin, 63.6 1.1E+02 0.0023 27.1 11.5 39 185-223 9-47 (110)
251 PRK10929 putative mechanosensi 63.6 3.7E+02 0.008 33.4 25.6 17 294-310 265-281 (1109)
252 PF05761 5_nucleotid: 5' nucle 63.5 18 0.0004 39.7 6.7 70 168-238 318-390 (448)
253 PF10267 Tmemb_cc2: Predicted 63.1 2.1E+02 0.0045 31.5 14.4 70 188-257 221-291 (395)
254 PF11180 DUF2968: Protein of u 63.0 1.7E+02 0.0037 29.3 13.3 22 236-257 162-183 (192)
255 TIGR01730 RND_mfp RND family e 63.0 52 0.0011 32.5 9.3 45 189-233 74-118 (322)
256 TIGR03185 DNA_S_dndD DNA sulfu 62.5 2.8E+02 0.006 31.6 26.4 35 133-167 225-259 (650)
257 TIGR02977 phageshock_pspA phag 62.5 1.6E+02 0.0036 28.9 17.5 38 273-310 113-150 (219)
258 TIGR03752 conj_TIGR03752 integ 62.3 94 0.002 34.9 11.8 19 2-20 5-23 (472)
259 PF09744 Jnk-SapK_ap_N: JNK_SA 62.2 1.5E+02 0.0033 28.5 11.9 65 186-253 89-153 (158)
260 PF05529 Bap31: B-cell recepto 62.1 78 0.0017 30.3 10.0 21 274-294 169-189 (192)
261 PF14988 DUF4515: Domain of un 61.9 1.7E+02 0.0038 29.1 24.0 95 137-236 17-111 (206)
262 TIGR03545 conserved hypothetic 61.7 94 0.002 35.3 11.9 41 241-284 190-230 (555)
263 PF14915 CCDC144C: CCDC144C pr 61.6 2.3E+02 0.005 30.3 24.3 189 126-343 58-287 (305)
264 KOG0018 Structural maintenance 61.5 4E+02 0.0087 33.1 24.3 39 272-310 401-439 (1141)
265 PF09728 Taxilin: Myosin-like 61.2 2.2E+02 0.0047 30.0 26.5 101 236-348 182-300 (309)
266 PF12761 End3: Actin cytoskele 61.2 74 0.0016 31.9 9.8 25 233-257 158-182 (195)
267 PF06005 DUF904: Protein of un 61.2 1E+02 0.0022 26.1 10.2 50 239-305 15-64 (72)
268 PF10473 CENP-F_leu_zip: Leuci 60.6 1.6E+02 0.0034 28.0 18.2 71 138-214 10-80 (140)
269 KOG4593 Mitotic checkpoint pro 60.6 3.5E+02 0.0075 32.1 23.9 107 128-234 194-316 (716)
270 KOG4360 Uncharacterized coiled 60.5 3.1E+02 0.0068 31.5 16.1 88 140-231 161-254 (596)
271 PF12126 DUF3583: Protein of u 60.2 2E+02 0.0043 30.8 13.1 57 196-252 6-63 (324)
272 COG4026 Uncharacterized protei 60.1 62 0.0013 33.5 9.2 49 162-210 138-187 (290)
273 KOG4005 Transcription factor X 59.9 72 0.0016 33.2 9.7 61 228-299 56-116 (292)
274 PF06008 Laminin_I: Laminin Do 59.9 2E+02 0.0042 29.0 18.7 34 275-310 129-162 (264)
275 COG1340 Uncharacterized archae 59.8 2.4E+02 0.0052 30.0 24.3 107 189-295 134-243 (294)
276 PRK13729 conjugal transfer pil 59.6 18 0.0004 40.2 5.9 23 187-209 98-120 (475)
277 PF05384 DegS: Sensor protein 59.3 1.7E+02 0.0038 28.2 17.9 82 194-275 28-117 (159)
278 smart00338 BRLZ basic region l 59.0 39 0.00083 27.0 6.3 36 269-304 22-57 (65)
279 TIGR03017 EpsF chain length de 58.9 2.5E+02 0.0054 29.8 19.6 63 171-233 170-238 (444)
280 PF07989 Microtub_assoc: Micro 58.7 81 0.0017 26.8 8.3 61 167-234 2-67 (75)
281 COG1842 PspA Phage shock prote 58.5 2.1E+02 0.0046 28.9 16.8 122 160-308 27-148 (225)
282 PF01920 Prefoldin_2: Prefoldi 58.0 46 0.001 28.1 6.9 33 276-308 65-97 (106)
283 PF12795 MscS_porin: Mechanose 57.9 2E+02 0.0044 28.5 16.5 116 198-313 12-139 (240)
284 KOG1962 B-cell receptor-associ 56.7 51 0.0011 33.4 8.0 20 326-345 192-211 (216)
285 PF12329 TMF_DNA_bd: TATA elem 56.2 1.2E+02 0.0025 25.6 8.9 33 278-310 31-63 (74)
286 COG3074 Uncharacterized protei 55.8 1.2E+02 0.0026 26.3 8.8 47 175-221 7-53 (79)
287 PRK12705 hypothetical protein; 55.5 3.6E+02 0.0077 30.6 19.0 28 220-247 55-82 (508)
288 PF08826 DMPK_coil: DMPK coile 55.3 98 0.0021 25.6 8.0 31 205-235 6-36 (61)
289 PF14077 WD40_alt: Alternative 54.9 12 0.00026 29.8 2.5 20 274-293 19-38 (48)
290 PF04949 Transcrip_act: Transc 54.9 2.1E+02 0.0047 27.9 15.3 78 192-304 55-136 (159)
291 PF04156 IncA: IncA protein; 54.8 1.9E+02 0.0041 27.3 15.3 64 137-206 87-150 (191)
292 TIGR02449 conserved hypothetic 54.7 1.1E+02 0.0024 25.7 8.4 50 185-234 6-59 (65)
293 PF13514 AAA_27: AAA domain 54.6 4.8E+02 0.01 31.8 26.7 41 275-315 891-931 (1111)
294 smart00340 HALZ homeobox assoc 54.6 24 0.00053 27.6 4.1 31 186-216 5-35 (44)
295 PLN02939 transferase, transfer 54.6 4.9E+02 0.011 32.0 17.8 58 291-348 268-338 (977)
296 KOG2398 Predicted proline-seri 54.4 4E+02 0.0087 30.9 17.3 20 339-358 176-195 (611)
297 PF13870 DUF4201: Domain of un 54.4 2E+02 0.0042 27.3 21.8 113 184-299 4-131 (177)
298 PRK13922 rod shape-determining 54.2 37 0.00079 34.1 6.6 39 194-232 70-108 (276)
299 KOG0980 Actin-binding protein 54.2 4.9E+02 0.011 31.8 26.9 249 100-358 307-578 (980)
300 PF04012 PspA_IM30: PspA/IM30 53.6 2.2E+02 0.0047 27.6 18.4 38 273-310 112-149 (221)
301 KOG1103 Predicted coiled-coil 53.2 3.5E+02 0.0077 29.9 19.7 56 171-226 117-172 (561)
302 PF04102 SlyX: SlyX; InterPro 53.1 57 0.0012 27.0 6.4 38 172-209 4-41 (69)
303 PF00170 bZIP_1: bZIP transcri 53.0 62 0.0013 25.9 6.5 36 269-304 22-57 (64)
304 PRK10698 phage shock protein P 52.7 2.5E+02 0.0055 28.0 17.1 43 268-310 108-150 (222)
305 TIGR02977 phageshock_pspA phag 52.6 2.4E+02 0.0052 27.8 21.0 106 136-252 36-146 (219)
306 TIGR02231 conserved hypothetic 52.3 1.7E+02 0.0037 32.2 11.8 26 185-210 70-95 (525)
307 PF13863 DUF4200: Domain of un 52.3 1.7E+02 0.0036 25.8 14.8 105 211-315 8-116 (126)
308 PRK00295 hypothetical protein; 52.1 89 0.0019 26.0 7.4 39 172-210 5-43 (68)
309 cd07652 F-BAR_Rgd1 The F-BAR ( 51.7 2.6E+02 0.0057 28.0 14.2 139 208-378 91-229 (234)
310 PRK15422 septal ring assembly 51.4 1.5E+02 0.0034 25.9 8.9 26 233-258 9-34 (79)
311 PF15294 Leu_zip: Leucine zipp 51.4 3.2E+02 0.0069 28.9 13.0 140 140-286 39-203 (278)
312 KOG0964 Structural maintenance 51.4 5.7E+02 0.012 31.8 25.0 45 264-308 423-467 (1200)
313 PF05769 DUF837: Protein of un 51.1 2.5E+02 0.0054 27.5 19.7 80 138-217 7-94 (181)
314 PF02403 Seryl_tRNA_N: Seryl-t 51.0 98 0.0021 26.8 8.0 28 188-215 38-65 (108)
315 PRK11519 tyrosine kinase; Prov 50.7 4.5E+02 0.0098 30.4 15.7 31 173-203 268-298 (719)
316 PF10212 TTKRSYEDQ: Predicted 50.4 3.1E+02 0.0066 31.4 13.4 47 211-257 456-502 (518)
317 PF10146 zf-C4H2: Zinc finger- 50.4 2.9E+02 0.0063 28.1 15.2 24 187-210 33-56 (230)
318 TIGR00219 mreC rod shape-deter 50.4 44 0.00095 34.5 6.6 38 194-231 67-105 (283)
319 PRK11020 hypothetical protein; 50.2 47 0.001 30.9 6.0 42 302-350 13-54 (118)
320 COG0497 RecN ATPase involved i 50.0 4.6E+02 0.0099 30.3 18.9 45 136-180 169-213 (557)
321 PF04977 DivIC: Septum formati 49.9 70 0.0015 25.6 6.5 28 185-212 23-50 (80)
322 PF02994 Transposase_22: L1 tr 49.9 45 0.00097 35.7 6.8 46 263-311 144-189 (370)
323 PRK04406 hypothetical protein; 49.8 82 0.0018 26.8 7.0 36 172-207 11-46 (75)
324 PRK02793 phi X174 lysis protei 49.7 87 0.0019 26.3 7.1 39 171-209 7-45 (72)
325 KOG1850 Myosin-like coiled-coi 49.7 3.8E+02 0.0083 29.3 22.1 120 191-310 206-329 (391)
326 PRK13169 DNA replication intia 49.5 78 0.0017 28.9 7.3 47 173-219 9-55 (110)
327 PF05010 TACC: Transforming ac 49.4 2.9E+02 0.0063 27.8 22.1 15 331-345 186-200 (207)
328 PF07246 Phlebovirus_NSM: Phle 49.4 1.2E+02 0.0026 31.7 9.5 66 188-254 177-242 (264)
329 PF06428 Sec2p: GDP/GTP exchan 48.7 87 0.0019 28.1 7.3 53 283-347 11-64 (100)
330 PF10205 KLRAQ: Predicted coil 48.6 2.1E+02 0.0047 26.0 10.2 64 238-304 8-71 (102)
331 PRK05431 seryl-tRNA synthetase 48.6 1.1E+02 0.0023 33.4 9.4 25 187-211 36-60 (425)
332 PF12329 TMF_DNA_bd: TATA elem 48.4 1.3E+02 0.0027 25.4 7.9 61 242-306 12-73 (74)
333 PRK00846 hypothetical protein; 48.4 96 0.0021 26.8 7.2 40 171-210 12-51 (77)
334 KOG4787 Uncharacterized conser 48.3 3.9E+02 0.0084 31.4 13.7 150 175-343 388-555 (852)
335 KOG3156 Uncharacterized membra 47.7 70 0.0015 32.6 7.3 42 319-377 108-149 (220)
336 PF08172 CASP_C: CASP C termin 47.6 1.8E+02 0.0039 29.8 10.4 32 176-207 3-34 (248)
337 PRK00888 ftsB cell division pr 47.5 25 0.00054 31.4 3.8 25 325-349 39-63 (105)
338 COG4372 Uncharacterized protei 47.5 4.5E+02 0.0098 29.5 26.3 17 135-151 78-94 (499)
339 PF07227 DUF1423: Protein of u 47.3 4.2E+02 0.009 29.8 13.6 49 172-220 350-399 (446)
340 PF07989 Microtub_assoc: Micro 46.9 1.2E+02 0.0026 25.8 7.5 56 288-347 8-63 (75)
341 PF05010 TACC: Transforming ac 46.5 3.2E+02 0.007 27.5 22.5 49 170-218 7-55 (207)
342 TIGR01069 mutS2 MutS2 family p 46.2 4.4E+02 0.0095 31.2 14.4 44 191-234 513-556 (771)
343 PF03112 DUF244: Uncharacteriz 46.1 1.5E+02 0.0032 28.9 8.8 73 140-212 23-103 (158)
344 PRK10929 putative mechanosensi 46.0 6.9E+02 0.015 31.2 23.9 21 174-194 104-124 (1109)
345 KOG3564 GTPase-activating prot 46.0 1.3E+02 0.0029 34.2 9.7 31 136-166 26-56 (604)
346 PF13935 Ead_Ea22: Ead/Ea22-li 45.8 1.6E+02 0.0035 27.3 8.9 35 189-226 77-113 (139)
347 PRK02119 hypothetical protein; 45.8 1.1E+02 0.0025 25.7 7.2 38 171-208 8-45 (73)
348 PRK12704 phosphodiesterase; Pr 45.6 4.9E+02 0.011 29.4 21.0 41 247-287 98-138 (520)
349 PRK04325 hypothetical protein; 45.6 1.1E+02 0.0024 25.9 7.1 37 172-208 9-45 (74)
350 KOG4403 Cell surface glycoprot 45.3 2.6E+02 0.0057 31.6 11.6 40 266-305 335-375 (575)
351 KOG0994 Extracellular matrix g 45.2 7.7E+02 0.017 31.5 26.2 42 325-368 1687-1728(1758)
352 PF07716 bZIP_2: Basic region 45.1 53 0.0011 25.6 4.9 31 269-299 21-51 (54)
353 TIGR02231 conserved hypothetic 45.0 3.2E+02 0.0069 30.2 12.5 8 298-305 181-188 (525)
354 cd00176 SPEC Spectrin repeats, 44.9 2.3E+02 0.005 25.3 15.0 10 225-234 80-89 (213)
355 PF09738 DUF2051: Double stran 44.6 1.6E+02 0.0035 31.1 9.7 94 139-250 78-173 (302)
356 PRK15178 Vi polysaccharide exp 44.4 3.6E+02 0.0078 30.1 12.7 51 140-190 244-304 (434)
357 TIGR00414 serS seryl-tRNA synt 44.3 1.4E+02 0.003 32.4 9.5 24 188-211 39-62 (418)
358 PF06810 Phage_GP20: Phage min 44.2 2.2E+02 0.0047 27.1 9.7 12 339-350 121-132 (155)
359 COG0497 RecN ATPase involved i 44.2 5.6E+02 0.012 29.6 22.3 58 324-381 329-394 (557)
360 PF12777 MT: Microtubule-bindi 44.1 3.8E+02 0.0082 28.2 12.4 93 167-259 10-106 (344)
361 COG3074 Uncharacterized protei 43.9 95 0.0021 26.9 6.4 30 268-297 13-42 (79)
362 PF00170 bZIP_1: bZIP transcri 43.5 92 0.002 24.9 6.1 28 185-212 25-52 (64)
363 PF06810 Phage_GP20: Phage min 43.5 3E+02 0.0065 26.2 11.5 15 275-289 118-132 (155)
364 TIGR02449 conserved hypothetic 43.0 1.6E+02 0.0035 24.8 7.6 39 272-310 13-51 (65)
365 PRK00736 hypothetical protein; 42.9 1.4E+02 0.0029 24.9 7.2 35 173-207 6-40 (68)
366 PF00804 Syntaxin: Syntaxin; 42.9 1.9E+02 0.0041 23.7 11.4 33 220-252 41-73 (103)
367 PF05278 PEARLI-4: Arabidopsis 41.7 4.5E+02 0.0097 27.7 12.6 15 98-112 93-107 (269)
368 PF08537 NBP1: Fungal Nap bind 41.6 2.5E+02 0.0055 30.2 10.6 46 185-233 174-219 (323)
369 KOG0993 Rab5 GTPase effector R 41.6 5.7E+02 0.012 28.9 13.4 152 194-358 22-178 (542)
370 KOG2264 Exostosin EXT1L [Signa 41.5 1.3E+02 0.0028 35.0 8.9 20 184-203 105-124 (907)
371 PF10205 KLRAQ: Predicted coil 41.5 1.9E+02 0.004 26.4 8.3 59 278-348 10-68 (102)
372 PF11544 Spc42p: Spindle pole 41.4 1.6E+02 0.0035 25.6 7.5 29 174-202 7-35 (76)
373 PF03961 DUF342: Protein of un 41.3 1.5E+02 0.0033 32.2 9.2 79 134-212 330-408 (451)
374 cd00179 SynN Syntaxin N-termin 41.3 2.6E+02 0.0057 25.0 17.1 34 220-253 40-73 (151)
375 smart00338 BRLZ basic region l 41.3 89 0.0019 25.0 5.7 26 186-211 26-51 (65)
376 KOG4715 SWI/SNF-related matrix 41.0 2.4E+02 0.0052 30.6 10.3 75 137-227 220-296 (410)
377 PF08172 CASP_C: CASP C termin 40.6 60 0.0013 33.2 5.7 35 174-208 95-129 (248)
378 PF13166 AAA_13: AAA domain 40.6 5.9E+02 0.013 28.8 18.3 147 129-275 320-471 (712)
379 PF05103 DivIVA: DivIVA protei 40.3 21 0.00045 31.5 2.2 32 276-307 28-59 (131)
380 KOG0994 Extracellular matrix g 40.2 9.1E+02 0.02 30.9 21.2 73 185-257 1590-1669(1758)
381 PF14257 DUF4349: Domain of un 40.0 1.4E+02 0.0031 29.8 8.2 49 185-233 131-185 (262)
382 PRK10246 exonuclease subunit S 40.0 7.8E+02 0.017 30.0 28.9 23 138-160 530-552 (1047)
383 KOG2607 CDK5 activator-binding 40.0 6E+02 0.013 28.8 15.0 102 177-296 386-489 (505)
384 PF05529 Bap31: B-cell recepto 40.0 2.6E+02 0.0056 26.7 9.7 32 221-256 158-189 (192)
385 KOG4005 Transcription factor X 39.7 3.1E+02 0.0068 28.7 10.5 23 349-371 210-233 (292)
386 PF14282 FlxA: FlxA-like prote 39.7 1.2E+02 0.0026 27.1 6.8 39 268-306 46-84 (106)
387 TIGR03495 phage_LysB phage lys 39.1 3.4E+02 0.0075 25.7 11.0 64 184-247 24-87 (135)
388 TIGR00998 8a0101 efflux pump m 38.9 4.3E+02 0.0092 26.7 14.7 85 137-234 79-163 (334)
389 TIGR02209 ftsL_broad cell divi 38.6 1.8E+02 0.004 23.9 7.4 37 178-214 23-59 (85)
390 PF05769 DUF837: Protein of un 37.6 4E+02 0.0088 26.1 14.6 19 290-308 73-91 (181)
391 PTZ00446 vacuolar sorting prot 37.5 4.3E+02 0.0093 26.3 19.6 71 188-258 29-104 (191)
392 KOG0244 Kinesin-like protein [ 37.3 5.3E+02 0.011 31.5 13.2 24 341-364 708-731 (913)
393 TIGR03794 NHPM_micro_HlyD NHPM 37.3 5.4E+02 0.012 27.4 17.6 20 144-163 95-114 (421)
394 KOG4436 Predicted GTPase activ 37.2 2.7E+02 0.0059 33.6 10.8 67 282-357 857-923 (948)
395 PF11932 DUF3450: Protein of u 37.1 4.4E+02 0.0095 26.3 18.3 62 185-256 55-116 (251)
396 KOG4807 F-actin binding protei 37.0 6.6E+02 0.014 28.3 17.5 18 356-373 520-537 (593)
397 PF10458 Val_tRNA-synt_C: Valy 37.0 1.3E+02 0.0028 24.5 6.1 65 277-346 1-65 (66)
398 COG5509 Uncharacterized small 37.0 51 0.0011 27.7 3.7 26 188-213 27-52 (65)
399 PF12001 DUF3496: Domain of un 36.5 3.5E+02 0.0075 25.0 9.4 70 171-243 6-76 (111)
400 PF09731 Mitofilin: Mitochondr 36.4 6.5E+02 0.014 28.1 21.7 17 2-18 8-24 (582)
401 KOG0247 Kinesin-like protein [ 36.3 8.4E+02 0.018 29.4 15.7 29 276-304 581-609 (809)
402 PF09763 Sec3_C: Exocyst compl 36.3 3E+02 0.0066 31.6 11.0 79 147-228 22-100 (701)
403 COG1566 EmrA Multidrug resista 35.8 5.8E+02 0.013 27.6 12.3 59 195-253 129-187 (352)
404 COG4913 Uncharacterized protei 35.4 9E+02 0.02 29.5 21.6 101 136-240 621-721 (1104)
405 PF14257 DUF4349: Domain of un 34.9 2.3E+02 0.005 28.3 8.8 63 133-199 127-189 (262)
406 TIGR03319 YmdA_YtgF conserved 34.8 7.1E+02 0.015 28.1 21.0 45 247-291 85-129 (514)
407 PRK11578 macrolide transporter 34.7 4.2E+02 0.0091 27.6 11.0 28 204-231 131-158 (370)
408 PRK10361 DNA recombination pro 34.7 7.2E+02 0.016 28.1 23.1 36 339-374 152-191 (475)
409 PF15290 Syntaphilin: Golgi-lo 34.2 6.1E+02 0.013 27.2 12.7 24 234-257 116-139 (305)
410 PF12808 Mto2_bdg: Micro-tubul 34.2 98 0.0021 25.0 4.8 37 174-210 6-46 (52)
411 PF05103 DivIVA: DivIVA protei 33.9 62 0.0013 28.5 4.2 29 319-347 99-127 (131)
412 PF11932 DUF3450: Protein of u 33.4 5E+02 0.011 25.9 13.7 10 398-407 157-166 (251)
413 KOG4438 Centromere-associated 33.2 7.5E+02 0.016 27.9 20.9 96 189-287 219-314 (446)
414 PLN02678 seryl-tRNA synthetase 33.0 2.6E+02 0.0056 31.1 9.4 12 364-375 262-273 (448)
415 PF08580 KAR9: Yeast cortical 32.7 8.8E+02 0.019 28.5 18.6 72 131-202 130-229 (683)
416 COG5185 HEC1 Protein involved 32.6 8.3E+02 0.018 28.2 19.8 56 176-231 253-309 (622)
417 PF10146 zf-C4H2: Zinc finger- 32.4 5.6E+02 0.012 26.1 13.2 12 276-287 91-102 (230)
418 PF07851 TMPIT: TMPIT-like pro 32.3 4.8E+02 0.01 28.2 11.0 35 137-171 3-37 (330)
419 PF07851 TMPIT: TMPIT-like pro 32.2 6E+02 0.013 27.5 11.7 59 191-256 2-60 (330)
420 COG4717 Uncharacterized conser 32.1 1E+03 0.023 29.2 18.5 29 137-165 563-591 (984)
421 PF06698 DUF1192: Protein of u 32.1 1E+02 0.0022 25.4 4.8 31 186-216 21-51 (59)
422 KOG0837 Transcriptional activa 32.0 2E+02 0.0044 30.3 7.9 32 268-299 222-253 (279)
423 PF10157 DUF2365: Uncharacteri 32.0 4.7E+02 0.01 25.1 12.7 34 260-293 113-146 (149)
424 PLN02678 seryl-tRNA synthetase 31.7 1.9E+02 0.0042 32.0 8.3 38 281-321 79-116 (448)
425 PF01486 K-box: K-box region; 31.6 3.4E+02 0.0074 23.4 10.9 26 278-303 73-98 (100)
426 KOG4403 Cell surface glycoprot 31.5 2.7E+02 0.0058 31.5 9.1 52 100-159 87-139 (575)
427 PRK00888 ftsB cell division pr 31.0 1.4E+02 0.003 26.8 5.8 30 275-304 29-58 (105)
428 PF10498 IFT57: Intra-flagella 30.9 7.2E+02 0.015 26.9 16.0 126 189-337 216-345 (359)
429 PF07716 bZIP_2: Basic region 30.9 1.1E+02 0.0024 23.8 4.7 28 185-212 24-51 (54)
430 KOG3091 Nuclear pore complex, 30.8 4.1E+02 0.0089 30.3 10.5 28 281-308 398-425 (508)
431 PLN03188 kinesin-12 family pro 30.5 1.3E+03 0.027 29.6 18.5 90 164-259 1109-1211(1320)
432 TIGR03794 NHPM_micro_HlyD NHPM 30.3 6.9E+02 0.015 26.6 19.1 23 137-159 95-117 (421)
433 TIGR02971 heterocyst_DevB ABC 30.2 5.9E+02 0.013 25.8 14.4 63 174-236 92-154 (327)
434 TIGR01554 major_cap_HK97 phage 29.9 4.2E+02 0.009 27.9 10.1 27 273-299 34-60 (378)
435 PTZ00464 SNF-7-like protein; P 29.7 5.9E+02 0.013 25.6 16.5 73 185-258 24-98 (211)
436 PF09006 Surfac_D-trimer: Lung 29.6 1.3E+02 0.0027 24.1 4.6 29 188-216 1-29 (46)
437 PF10481 CENP-F_N: Cenp-F N-te 29.4 7.3E+02 0.016 26.6 17.2 39 197-235 47-85 (307)
438 PTZ00491 major vault protein; 29.4 1E+03 0.022 29.0 13.8 50 150-206 663-712 (850)
439 PF03962 Mnd1: Mnd1 family; I 29.2 5.5E+02 0.012 25.1 11.7 28 319-346 134-161 (188)
440 PF06637 PV-1: PV-1 protein (P 28.9 8.6E+02 0.019 27.2 14.5 24 189-212 288-311 (442)
441 PF09738 DUF2051: Double stran 28.8 4.9E+02 0.011 27.6 10.3 49 168-216 122-170 (302)
442 KOG0796 Spliceosome subunit [R 28.8 6.4E+02 0.014 27.3 11.1 93 140-241 85-180 (319)
443 KOG3433 Protein involved in me 28.6 6.3E+02 0.014 25.6 12.0 98 199-299 42-149 (203)
444 PF07412 Geminin: Geminin; In 28.3 1.6E+02 0.0035 29.7 6.3 47 187-233 126-172 (200)
445 PRK14892 putative transcriptio 28.3 35 0.00076 30.6 1.6 14 358-371 65-78 (99)
446 PF14193 DUF4315: Domain of un 28.3 2.3E+02 0.0049 24.8 6.5 23 213-235 4-26 (83)
447 COG1730 GIM5 Predicted prefold 28.3 2.7E+02 0.0059 26.6 7.6 44 187-230 7-50 (145)
448 PF14932 HAUS-augmin3: HAUS au 28.0 4.1E+02 0.0089 27.0 9.3 34 325-358 119-152 (256)
449 PRK03947 prefoldin subunit alp 28.0 4.6E+02 0.01 23.8 12.8 43 188-230 8-50 (140)
450 PF10481 CENP-F_N: Cenp-F N-te 27.9 2.7E+02 0.0059 29.7 8.0 39 270-308 15-53 (307)
451 KOG2072 Translation initiation 27.7 1.2E+03 0.026 28.6 25.4 33 191-223 668-700 (988)
452 COG1842 PspA Phage shock prote 27.6 6.6E+02 0.014 25.5 18.1 162 189-372 27-189 (225)
453 PRK09841 cryptic autophosphory 27.6 1E+03 0.022 27.7 14.3 26 275-300 372-397 (726)
454 PF09969 DUF2203: Uncharacteri 27.6 4.1E+02 0.0089 24.4 8.4 38 164-205 2-39 (120)
455 PF05308 Mito_fiss_reg: Mitoch 27.4 51 0.0011 33.9 2.8 25 193-217 122-146 (253)
456 TIGR02894 DNA_bind_RsfA transc 27.4 3.4E+02 0.0074 26.6 8.1 61 166-226 91-155 (161)
457 PRK10698 phage shock protein P 27.3 6.4E+02 0.014 25.2 16.1 36 275-310 101-136 (222)
458 PRK05431 seryl-tRNA synthetase 27.1 3.8E+02 0.0081 29.3 9.4 11 365-375 258-268 (425)
459 PF02403 Seryl_tRNA_N: Seryl-t 26.8 4E+02 0.0087 23.0 7.9 17 217-233 43-59 (108)
460 PF04420 CHD5: CHD5-like prote 26.8 1.9E+02 0.0041 27.4 6.3 55 184-238 38-94 (161)
461 PF05377 FlaC_arch: Flagella a 26.5 2.8E+02 0.0062 22.8 6.3 23 189-211 10-32 (55)
462 PF12072 DUF3552: Domain of un 26.3 6.2E+02 0.013 24.7 21.6 96 219-320 55-150 (201)
463 PRK00409 recombination and DNA 26.2 1.2E+03 0.025 27.8 16.3 6 11-16 279-284 (782)
464 PF00901 Orbi_VP5: Orbivirus o 26.2 1E+03 0.022 27.3 14.8 34 224-257 140-173 (508)
465 PLN02320 seryl-tRNA synthetase 26.1 3.5E+02 0.0075 30.7 9.1 23 189-211 103-125 (502)
466 PF02183 HALZ: Homeobox associ 26.1 2.6E+02 0.0057 21.7 5.8 30 183-212 9-38 (45)
467 PRK14160 heat shock protein Gr 26.0 5.6E+02 0.012 26.0 9.7 50 188-240 56-105 (211)
468 PF10046 BLOC1_2: Biogenesis o 25.8 4.6E+02 0.0099 23.0 12.2 87 185-275 13-99 (99)
469 PF04728 LPP: Lipoprotein leuc 25.7 3.8E+02 0.0083 22.1 7.5 40 185-227 9-48 (56)
470 KOG2391 Vacuolar sorting prote 25.7 3.9E+02 0.0085 29.2 8.9 55 198-252 223-277 (365)
471 PF14362 DUF4407: Domain of un 25.5 7.3E+02 0.016 25.3 16.3 27 180-206 136-162 (301)
472 PF05600 DUF773: Protein of un 25.4 6.2E+02 0.014 28.6 10.9 67 165-234 425-491 (507)
473 PF15066 CAGE1: Cancer-associa 25.3 1.1E+03 0.023 27.1 23.3 65 203-272 390-455 (527)
474 PRK14161 heat shock protein Gr 25.2 3.4E+02 0.0074 26.6 7.9 49 189-240 15-63 (178)
475 PF13747 DUF4164: Domain of un 25.2 4.6E+02 0.01 22.9 10.7 33 278-310 51-83 (89)
476 KOG2417 Predicted G-protein co 25.1 5.5E+02 0.012 28.6 9.9 36 171-206 185-220 (462)
477 PF15030 DUF4527: Protein of u 25.0 8.4E+02 0.018 25.8 10.8 47 189-235 12-58 (277)
478 PF12808 Mto2_bdg: Micro-tubul 24.9 1.9E+02 0.004 23.5 4.9 25 325-349 27-51 (52)
479 PRK11556 multidrug efflux syst 24.8 4.8E+02 0.01 28.0 9.6 40 195-234 141-180 (415)
480 PF14916 CCDC92: Coiled-coil d 24.8 1.3E+02 0.0027 25.1 4.1 23 273-295 21-43 (60)
481 TIGR00414 serS seryl-tRNA synt 24.6 4.4E+02 0.0095 28.7 9.3 10 365-374 260-269 (418)
482 PF04350 PilO: Pilus assembly 24.6 45 0.00098 29.5 1.7 27 197-223 10-36 (144)
483 KOG4796 RNA polymerase II elon 24.6 6.3E+02 0.014 29.3 10.6 82 202-294 507-595 (604)
484 cd07590 BAR_Bin3 The Bin/Amphi 24.5 7.5E+02 0.016 25.1 17.8 55 283-352 125-181 (225)
485 KOG4797 Transcriptional regula 24.4 99 0.0021 28.8 3.7 28 137-164 66-93 (123)
486 PF10805 DUF2730: Protein of u 24.0 5.2E+02 0.011 23.0 9.8 63 137-203 34-96 (106)
487 PF14817 HAUS5: HAUS augmin-li 24.0 1.2E+03 0.026 27.3 13.1 105 152-256 49-163 (632)
488 COG4396 Mu-like prophage host- 24.0 4.9E+02 0.011 25.4 8.3 60 185-244 17-81 (170)
489 PF02970 TBCA: Tubulin binding 23.9 4.9E+02 0.011 22.7 8.5 38 185-223 51-88 (90)
490 PF09304 Cortex-I_coil: Cortex 23.8 5.8E+02 0.013 23.6 14.0 34 275-308 60-93 (107)
491 PRK02119 hypothetical protein; 23.8 4.5E+02 0.0097 22.2 7.9 26 190-215 6-31 (73)
492 KOG2391 Vacuolar sorting prote 23.7 4.6E+02 0.0099 28.8 9.0 58 203-260 221-278 (365)
493 PF10805 DUF2730: Protein of u 23.6 5.1E+02 0.011 23.0 8.1 55 183-237 32-92 (106)
494 COG2900 SlyX Uncharacterized p 23.6 4.2E+02 0.0092 22.9 7.1 30 171-200 7-36 (72)
495 PF07544 Med9: RNA polymerase 23.5 2.2E+02 0.0049 24.3 5.6 57 136-195 26-82 (83)
496 PRK13169 DNA replication intia 23.4 3E+02 0.0064 25.3 6.6 35 272-306 21-55 (110)
497 PF01166 TSC22: TSC-22/dip/bun 23.4 79 0.0017 26.3 2.6 30 137-166 13-42 (59)
498 KOG3214 Uncharacterized Zn rib 23.4 46 0.001 30.4 1.4 11 358-368 70-80 (109)
499 PF01166 TSC22: TSC-22/dip/bun 23.4 1E+02 0.0023 25.6 3.3 20 187-206 15-34 (59)
500 PRK13182 racA polar chromosome 23.4 6.2E+02 0.013 24.7 9.2 64 177-240 83-148 (175)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.64 E-value=0.054 Score=62.23 Aligned_cols=12 Identities=25% Similarity=0.291 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHhh
Q 046111 394 SQERAKQLMLEYA 406 (520)
Q Consensus 394 SqekAKqLmleya 406 (520)
+.+.|+.+| +|.
T Consensus 556 ~~~~a~~~i-~~l 567 (1164)
T TIGR02169 556 DDAVAKEAI-ELL 567 (1164)
T ss_pred CHHHHHHHH-HHH
Confidence 445566554 444
No 2
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.64 E-value=0.038 Score=59.30 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
..++..|...+..++.+-..++..+..+... ....+.++++++..-..++..+...+..|+.+-..+..++..+..+.
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~--~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L 257 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK--NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 4555666666666555555444444444331 22346666666666666666666666666666666665555555544
Q ss_pred HHHHHHHHHHH
Q 046111 217 KELEVARNKIK 227 (520)
Q Consensus 217 ~ELe~ar~Kir 227 (520)
.+++.+..+++
T Consensus 258 ~~l~~~~~~~~ 268 (562)
T PHA02562 258 NKLNTAAAKIK 268 (562)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.017 Score=68.31 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=122.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------
Q 046111 135 DNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ------ 208 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q------ 208 (520)
..+.++..+....+.++++...++.++-++. ..+++|+++|..-.+++..+...|+-|+..-..++++
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr------~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~ 855 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLR------ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVV 855 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3445555555556666666555555555543 3567777777777776666655555444444433333
Q ss_pred --------HHhHHhHHHHHHHH-----H-HHHHHHHHHHHHHH----HhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH
Q 046111 209 --------IAQSSYVKKELEVA-----R-NKIKELQRQIQLDA----NQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK 270 (520)
Q Consensus 209 --------v~e~~~v~~ELe~a-----r-~Kir~Lqkk~~~~a----~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek 270 (520)
-..+..+.+|++.+ + .+|+.||.+|.... ...+..+..+.+|+..|.+. +.+....+++
T Consensus 856 d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~---i~k~~~~i~~ 932 (1293)
T KOG0996|consen 856 DKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEAD---IAKLTVAIKT 932 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHH---HHHhHHHHhc
Confidence 22344444555554 4 77888888877543 33455555555555554333 3444444444
Q ss_pred HHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcC-CCchh-HHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 271 KLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLS-NMTES-EKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 271 Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls-nv~e~-~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
.-..+..+...+.+|.+-...+..+...|...+...+.++..+. +..+. .-...++.++..++..=+++.+.+-.|+.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555666556666666666555555554443321 11222 23345678888888888889999999999
Q ss_pred cccchhhH
Q 046111 349 NRFGEVEE 356 (520)
Q Consensus 349 dR~seVEE 356 (520)
+|.. ++=
T Consensus 1013 ~rId-~~~ 1019 (1293)
T KOG0996|consen 1013 ERID-IEN 1019 (1293)
T ss_pred hhcc-HHH
Confidence 8877 553
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.53 E-value=0.19 Score=57.42 Aligned_cols=6 Identities=17% Similarity=-0.175 Sum_probs=2.5
Q ss_pred HHHHHH
Q 046111 9 VAASIA 14 (520)
Q Consensus 9 va~s~a 14 (520)
-|++|+
T Consensus 41 ~ai~~~ 46 (1179)
T TIGR02168 41 DAIRWV 46 (1179)
T ss_pred HHHHHH
Confidence 344444
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.52 E-value=0.13 Score=58.75 Aligned_cols=49 Identities=27% Similarity=0.231 Sum_probs=25.6
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc
Q 046111 326 REEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNY 374 (520)
Q Consensus 326 ~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ELrn~ 374 (520)
..+...++..-..+..+++.++.....--.++-.++.--+=++.++.+.
T Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l 934 (1179)
T TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555565555554444455555555555555555444
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.42 E-value=0.27 Score=56.64 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.9
Q ss_pred HHHHHhhhhhc
Q 046111 326 REEVNNLRHAN 336 (520)
Q Consensus 326 ~eE~~~LR~~N 336 (520)
..++..+...|
T Consensus 964 ~~~i~~l~~vN 974 (1164)
T TIGR02169 964 EEEIRALEPVN 974 (1164)
T ss_pred HHHHHHcCCCC
Confidence 34444444444
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=97.39 E-value=0.065 Score=61.02 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh-
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY- 214 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~- 214 (520)
+..++..|...+..+..+-..|+..+-....+.+....+-++++.+.....+++....++..|+.+-..|++.+.++..
T Consensus 480 ~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~ 559 (880)
T PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444333333221111222222233344444444555555666666666666666666665555
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH
Q 046111 215 ---VKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 215 ---v~~ELe~ar~Kir~Lqkk~~ 234 (520)
+..++..+..++..+++++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~ 582 (880)
T PRK02224 560 AAEAEEEAEEAREEVAELNSKLA 582 (880)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 33344444445555555554
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.13 Score=58.23 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=21.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhc
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASL 313 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~l 313 (520)
++.....+..+..++.+++.....++.+..+|..++...+.++..+
T Consensus 607 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l 652 (880)
T PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444333
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.14 Score=61.05 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
+.+++.++.+|+.....++.+..++..+|..++... ..+..++..++..-++|.+++..+...
T Consensus 837 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------------~~l~~~l~~~~~~~~~l~~~l~~~~~~ 899 (1163)
T COG1196 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEK------------EELEDELKELEEEKEELEEELRELESE 899 (1163)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444332 223334444444444455554444433
No 10
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.36 E-value=0.085 Score=61.43 Aligned_cols=145 Identities=28% Similarity=0.435 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHh-----------
Q 046111 151 QEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDM--------LNITINSLQAERKKLQEQIAQ----------- 211 (520)
Q Consensus 151 qERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~--------L~~kI~sLEsEn~RL~~qv~e----------- 211 (520)
+||--.|+.++.- ||| .+-+|+..|.+-.+|+.. -.-....||.+|.||.+-+..
T Consensus 324 EERaesLQ~eve~---lkE---r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d 397 (1243)
T KOG0971|consen 324 EERAESLQQEVEA---LKE---RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQD 397 (1243)
T ss_pred HHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4555555555443 222 255666666666666543 233456788899999987764
Q ss_pred HHhHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhhhhHHH---HHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111 212 SSYVKKELEVARNKIKELQRQ---IQLDANQTKGQLLLLKQQVSGLQAKE---EEAIKKDVELEKKLKSVKDLEVEVVEL 285 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqkk---~~~~a~q~K~qi~~Lkq~V~~Lq~~E---ee~~~~d~E~EkKl~~l~~LE~Ev~EL 285 (520)
+-++.+|+|.-+.++.+|.+. ++....++..+|+-||+||..-=.-| +....+..++|.|.+-+.+==.++++|
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 557889999999999888764 56677778899999999997533333 334456667776654444433445566
Q ss_pred HHHhHHHHHHHHHHHH
Q 046111 286 KRKNKELQIEKRELLV 301 (520)
Q Consensus 286 Rr~Nk~LQ~EK~eL~~ 301 (520)
+..|.+|++-+++|..
T Consensus 478 ee~~EQL~Esn~ele~ 493 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELEL 493 (1243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888887777643
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.33 E-value=0.033 Score=61.83 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 136 NARELERLRSLVLELQEREVKLEGELL-EYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLL-Ey~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
++.+|..|+.-|.+|+-+=...+..+. .--.+.++...+-.|+.++..-+..++.|...+.-|-.||.||..++....+
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345555555555555444322222221 1223455567788888888888888888888888888888888888877764
Q ss_pred ------------------HHHHHHHHH----HHHHHHHHHHHHHH-HhhHHHHH-HHHHHHhhhhHHHHHHhhh-hHHHH
Q 046111 215 ------------------VKKELEVAR----NKIKELQRQIQLDA-NQTKGQLL-LLKQQVSGLQAKEEEAIKK-DVELE 269 (520)
Q Consensus 215 ------------------v~~ELe~ar----~Kir~Lqkk~~~~a-~q~K~qi~-~Lkq~V~~Lq~~Eee~~~~-d~E~E 269 (520)
+.++|+.++ ..|++++++.+++. ..++.... -|++-+..|.++-+..+.. -.++|
T Consensus 191 ~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE 270 (546)
T KOG0977|consen 191 QLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIE 270 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 667788888 88889998888887 55544332 2444444444444332222 22232
Q ss_pred ----HHHhhHHh-----------HHHHHHHHHHH-------hHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHH
Q 046111 270 ----KKLKSVKD-----------LEVEVVELKRK-------NKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKARE 327 (520)
Q Consensus 270 ----kKl~~l~~-----------LE~Ev~ELRr~-------Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~e 327 (520)
.|++.++. .=-|+..+|.. ..+|+-.|..|..+++.-+.++.......+. ..+.-..
T Consensus 271 ~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~-~L~~kd~ 349 (546)
T KOG0977|consen 271 SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ-ALNDKDA 349 (546)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh-hhhhHHH
Confidence 34444431 11344444444 4444444555555554444443322222211 2222245
Q ss_pred HHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcC
Q 046111 328 EVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQ 375 (520)
Q Consensus 328 E~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ELrn~~ 375 (520)
++..+|..=..|+.+++.|=. ++.-|+-|+--|.
T Consensus 350 ~i~~mReec~~l~~Elq~LlD--------------~ki~Ld~EI~~YR 383 (546)
T KOG0977|consen 350 EIAKMREECQQLSVELQKLLD--------------TKISLDAEIAAYR 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------------hHhHHHhHHHHHH
Confidence 555555555556766666643 4566777876664
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.14 Score=58.06 Aligned_cols=120 Identities=19% Similarity=0.273 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
+.-...++...+.++.+-..|+..+-.+... +..+..++.++.....++..+...+..++.+-..++.++..+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i---~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENI---EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777777777776555443 4456778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhHHHH
Q 046111 217 KELEVARNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
.+++.++.++..+..++... .......+..+++++..|+....
T Consensus 238 ~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777765543 33445556666666666655543
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.18 Score=59.99 Aligned_cols=13 Identities=38% Similarity=0.550 Sum_probs=7.2
Q ss_pred CCCCcccCCCCCC
Q 046111 471 SSPARSISGCSPS 483 (520)
Q Consensus 471 ~~~~~s~~~~sp~ 483 (520)
..|+.+.+||++.
T Consensus 646 ~~~~G~~tGG~~~ 658 (1163)
T COG1196 646 VEPSGSITGGSRN 658 (1163)
T ss_pred EeCCeeeecCCcc
Confidence 4455666666444
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.13 Score=61.91 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 141 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
.++..-+..|+.+=..|+.++..|-+ ...+.+|+.++.....+++.+..++..++.+..+++.++..+
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666665544 336778888888888888888777777777777777766666
No 15
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.27 E-value=0.11 Score=59.28 Aligned_cols=142 Identities=23% Similarity=0.205 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046111 170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQ 249 (520)
Q Consensus 170 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq 249 (520)
|.++|..|....+....=+.+++..|..|++|.++|..-+..-..+.+.+..+=.|......+.+......+..+..|..
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~ 551 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA 551 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34555555554433333377888899999999999999998888888888888888888888888888888888999999
Q ss_pred HHhhhhHHHHHHhhhhHHHHHHHh------hHHhHHHHHHHHHHHh-----------HHHHHHHHHHHHhHHHHHHHHhh
Q 046111 250 QVSGLQAKEEEAIKKDVELEKKLK------SVKDLEVEVVELKRKN-----------KELQIEKRELLVKLDAAESKIAS 312 (520)
Q Consensus 250 ~V~~Lq~~Eee~~~~d~E~EkKl~------~l~~LE~Ev~ELRr~N-----------k~LQ~EK~eL~~kL~~AE~~~~~ 312 (520)
+...+|+.--++.. |--.+.+++ +-..|-..|.+||.+. ..+-+|+++|-.||++||-+...
T Consensus 552 ~~~a~qat~d~a~~-Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 552 QALAEQATNDEARS-DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHhhhhhhh-hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887654322 211222222 2335666777777554 45778999999999999976543
No 16
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.19 E-value=0.36 Score=56.32 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=72.7
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046111 169 EQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLK 248 (520)
Q Consensus 169 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lk 248 (520)
|+..++..+++++..-.++...-......-.+|.++|+.++++..+.+.+++.|...+.++.++.. ....+.-.+|
T Consensus 355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l----~~e~ry~klk 430 (980)
T KOG0980|consen 355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKAL----AAENRYEKLK 430 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH
Confidence 445556666666666666666555555555667779999999999999999999988777776654 3455666777
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111 249 QQVSGLQAKEEEAIKKDVELEKKLKS 274 (520)
Q Consensus 249 q~V~~Lq~~Eee~~~~d~E~EkKl~~ 274 (520)
...+.|.....+.++..+++.+++..
T Consensus 431 ek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 431 EKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766543
No 17
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.19 E-value=0.1 Score=56.67 Aligned_cols=178 Identities=21% Similarity=0.209 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcchhhhhHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 137 ARELERLRSLVLELQE--REVKLEGELLEYYGLKEQESDIVELQRQLK-IKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqE--RE~~LE~eLLEy~~LKEQEa~v~ELe~~L~-~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
.+|...|-..+-+|+| ||+.|.+ .-.|-|.+-...|+.-.+. .+.-+++.|.+++-.|+.||.+|+..++...
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElra----eE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRA----EESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665555544 2222222 1223333334444444333 4567889999999999999999999998887
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHh
Q 046111 214 YVKKELEVAR----NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKN 289 (520)
Q Consensus 214 ~v~~ELe~ar----~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~N 289 (520)
....+|+.-+ -.+..|.-++.-+..--+.+-..|.+ + ++.-...+ -=++|||+..
T Consensus 325 sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr----f--------------q~ekeatq---ELieelrkel 383 (502)
T KOG0982|consen 325 SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR----F--------------QEEKEATQ---ELIEELRKEL 383 (502)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--------------HHhhHHHH---HHHHHHHHHH
Confidence 7777665544 23333333333333333332222222 1 11111222 2367888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111 290 KELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR 350 (520)
Q Consensus 290 k~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR 350 (520)
..||..|..++.--- ...+--+.....++.+||+-|--|..|=|.|++-=
T Consensus 384 ehlr~~kl~~a~p~r-----------grsSaRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 384 EHLRRRKLVLANPVR-----------GRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHHHHHHHhhcccc-----------CchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence 888888877741100 00122233356788888888888888888777643
No 18
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.10 E-value=0.055 Score=63.38 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 046111 143 LRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVA 222 (520)
Q Consensus 143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~a 222 (520)
|.-.+..|+.+=++|+.||-|-. ..+..|+++|....+|++.|+..|.-+..+..|...-..+..+++..-++|
T Consensus 175 L~velAdle~kir~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~ 248 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERP 248 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcC
Confidence 33334444445556666655544 568899999999999999999999999999999999999999998887776
Q ss_pred HHH-------HHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111 223 RNK-------IKELQRQIQLDANQTK---GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL 292 (520)
Q Consensus 223 r~K-------ir~Lqkk~~~~a~q~K---~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L 292 (520)
-.+ +..++-++...-+.++ +.-.||++|+-++.++-+- +....+|-+=-+.+.+|+.+--=.|....+|
T Consensus 249 d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 249 DTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred CCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 422 2223444443333322 3456778888887777643 4455555555566788888877788888888
Q ss_pred HHHHHHHHHh
Q 046111 293 QIEKRELLVK 302 (520)
Q Consensus 293 Q~EK~eL~~k 302 (520)
+.||..|-+.
T Consensus 328 ~eEnstLq~q 337 (1195)
T KOG4643|consen 328 HEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHH
Confidence 8888877443
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.07 E-value=0.084 Score=59.21 Aligned_cols=95 Identities=20% Similarity=0.359 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHh---hcCCCchhHHHHHH---HHHHHhhhhhcH
Q 046111 264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIA---SLSNMTESEKVAKA---REEVNNLRHAND 337 (520)
Q Consensus 264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~---~lsnv~e~~~Va~a---~eE~~~LR~~NE 337 (520)
+..+..++++.++.|..++.++-.....-++.-..|...++..-..++ +..- -=+||.-+ ++|+++.-.-..
T Consensus 438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~R--IlEIv~NI~KQk~eI~KIl~DTr 515 (594)
T PF05667_consen 438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRR--ILEIVKNIRKQKEEIEKILSDTR 515 (594)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence 445555666666666666555555444444444444444433221110 0000 12344333 466666655556
Q ss_pred HHHHHHHHHh---hcccchhhHHHHH
Q 046111 338 DLLKQVEGLQ---MNRFGEVEELVYL 360 (520)
Q Consensus 338 dL~kqVEqLq---~dR~seVEELVYL 360 (520)
.|-|++..|. ..=|+.++||||-
T Consensus 516 ~lQkeiN~l~gkL~RtF~v~dElifr 541 (594)
T PF05667_consen 516 ELQKEINSLTGKLDRTFTVTDELIFR 541 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777766554 3569999999994
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.05 E-value=0.23 Score=56.80 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=93.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
.-++.||.+||.-+...+..|..|..++--|-. .=..+..+|.....+.+.|..++..|....+.=...+....
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~------~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTN------NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999988764332 11244555555555566666665555443332222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhH------------------HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhH
Q 046111 214 YVKKELEVARNKIKELQRQIQLDANQTK------------------GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSV 275 (520)
Q Consensus 214 ~v~~ELe~ar~Kir~Lqkk~~~~a~q~K------------------~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l 275 (520)
+=.++...+|. .|.+++..+.++-+ +--..++++...|+ .|.-+-..|+..|-..+
T Consensus 495 krL~eE~~~R~---~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE---~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 495 KRLAEERRQRA---SLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE---SELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 22222222221 12222222111111 12234555554444 33444455577777777
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN 315 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn 315 (520)
..||.++.+||..+++=+.+-..|..=|.+.|.+...|.|
T Consensus 569 ~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 569 RELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877666566666677777777766555444
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=97.02 E-value=0.35 Score=55.23 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eL 161 (520)
..++..|+..+..++++-..++.++
T Consensus 212 ~~~l~el~~~i~~~~~~~~~l~~~l 236 (880)
T PRK02224 212 ESELAELDEEIERYEEQREQARETR 236 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444
No 22
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.00 E-value=0.043 Score=57.15 Aligned_cols=178 Identities=25% Similarity=0.344 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHH-HHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLK----EQESDIV-ELQRQ----LKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LK----EQEa~v~-ELe~~----L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
++.++..-+..|..|+ -|..+..+||..|.=- +.++... .+... -.-+-..++.|..|+..||.||..|+
T Consensus 102 le~~L~~~~e~v~qLr-HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR 180 (306)
T PF04849_consen 102 LEEQLGAALEQVEQLR-HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLR 180 (306)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665 3677777787777621 1111110 00000 01122457899999999999999999
Q ss_pred HHHHhHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111 207 EQIAQSSY---------------VKKELEVARNKIKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 207 ~qv~e~~~---------------v~~ELe~ar~Kir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~ 268 (520)
.++..+.. .+++|..|..+|..|..-+-...+.+ .++|..|.-+|..||.+-
T Consensus 181 ~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~---------- 250 (306)
T PF04849_consen 181 SEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC---------- 250 (306)
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 99888763 34566666666666665555444333 234444444444444443
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhc
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHAN 336 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~N 336 (520)
+.+-.|.+||+.....-..--+.|+..|...+.+.+.. -.|...+++|+..||+.|
T Consensus 251 -------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~-----~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 251 -------KQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC-----MAMLHEAQEELKTLRKRT 306 (306)
T ss_pred -------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCC
Confidence 22333333333333333333333333333333332111 235666788888877654
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.97 E-value=0.35 Score=60.65 Aligned_cols=166 Identities=27% Similarity=0.364 Sum_probs=80.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
...+.++..+...+++.+++...|+.+.-+. +..+.+|+..+......+..+.++...++.+++.|++++..+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~------~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~ 977 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKL------EQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD 977 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777777765432 2445555555555555555555555555555555555544444
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHH
Q 046111 214 YVKKELEVARNK----IKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELK 286 (520)
Q Consensus 214 ~v~~ELe~ar~K----ir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELR 286 (520)
.....|-..|.. ++.|+-.++..-+++ ......|-+++..++..-+..-+.-.++++. .++||.+...++
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~---~rkle~el~~~~ 1054 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA---KRKLEGELKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 444444444433 333333333222222 2233334444444444443333333344422 244444444444
Q ss_pred HHhHHHHHHHHHHHHhHHHHHH
Q 046111 287 RKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 287 r~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
.....+..++.+|...|...+.
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~ 1076 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKES 1076 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=0.37 Score=58.20 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH------hHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSS------YVKKELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~------~v~~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
..+...|..++.+-..|..++..+. .+..++.....+++.|++++. ....+.+.+|..|+.++..+.....
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~kl 874 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL 874 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666555554332 255666666666666655443 3344445556666555555554443
Q ss_pred HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
.....-.....--..+.+|..++.+++...+++..+-..|..++..++...
T Consensus 875 kl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 875 QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 322211111111112333344444444444444444444555555555443
No 25
>PRK11637 AmiB activator; Provisional
Probab=96.85 E-value=0.87 Score=48.45 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
.+|+.+..+|.....+++.++.+|.......+..+..|..- ......++..|+..-..|.++|+.|+.
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~-----~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESS-----LQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666655554444333222210 111123344444444456666665543
No 26
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.79 E-value=0.67 Score=58.23 Aligned_cols=129 Identities=21% Similarity=0.300 Sum_probs=86.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
||..+.--...+.....++.+|-.-+.+|..++.+.....++=...|..+.-.++|+..+..-.+.++..++.++..|+.
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333334444444555555555555555555555555555555566666667777777777777777778888877765
Q ss_pred HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
. ..+...++..-...+.++...+..+.+..++||-.+.+|.-.|++-..
T Consensus 1070 ~---l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1070 Q---LKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred H---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 445677777777778888888888888888888888888777775443
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.76 E-value=0.14 Score=47.62 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ 250 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~ 250 (520)
++.+..|+.+...+..+|.-|..++..|+.+-..++.++.+......+-+-....+.-|+++|+..=.+
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee----------- 88 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE----------- 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH-----------
Confidence 344667777777888889999999999999999999888888888887777766666666666543221
Q ss_pred HhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 251 VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 251 V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
.-..+.-+..-...++...+.+.++-|..+.|+.+...+-.|++..+.++
T Consensus 89 ----------le~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 89 ----------LEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11222233444455678888889999999999998888888888776655
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.71 E-value=0.37 Score=57.14 Aligned_cols=154 Identities=25% Similarity=0.321 Sum_probs=93.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNIT-------INSLQAERKKL 205 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-------I~sLEsEn~RL 205 (520)
.+++.|+..|.+.+.+|+......+..|-++.. |++=...+..+++++..+..|+..|.-. |..++.+-...
T Consensus 664 e~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei 743 (1074)
T KOG0250|consen 664 EDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREI 743 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHH
Confidence 344555555555555555555555555555543 2333444566677777777777776663 44444444444
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH--------------H
Q 046111 206 QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK--------------K 271 (520)
Q Consensus 206 ~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek--------------K 271 (520)
.....++..-.+.++..+.++..++.+.+...+.=.+.-..|++....|++-+.+.-.+++.+.. .
T Consensus 744 ~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~ 823 (1074)
T KOG0250|consen 744 KKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSR 823 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHh
Confidence 44444555555555666667776666666666666777778888888888888777666555443 3
Q ss_pred HhhHHhHHHHHHHHHH
Q 046111 272 LKSVKDLEVEVVELKR 287 (520)
Q Consensus 272 l~~l~~LE~Ev~ELRr 287 (520)
++.++..|+++..+..
T Consensus 824 l~~l~~~E~~~~~~e~ 839 (1074)
T KOG0250|consen 824 LEELKQKEVEKVNLEE 839 (1074)
T ss_pred hHHHHHHHHHHHhhhc
Confidence 5556666666655544
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.69 E-value=1.5 Score=49.08 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046111 139 ELERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 139 EI~~Lr~lVeeLqERE~~LE~eL 161 (520)
+...|..-+..|+++=.+|+.+|
T Consensus 158 ~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 158 ENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.67 E-value=0.27 Score=52.94 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
....+.........|+.++.+|...+.++..+..+|..+|..+....
T Consensus 349 ~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 349 NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777777777777777777777777777665544
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.66 E-value=0.53 Score=47.71 Aligned_cols=112 Identities=24% Similarity=0.405 Sum_probs=57.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
...-|....+++..++..+..++.+...|+.++..+ ..+|..++.+++..+.++ .+-.+-.++..|...+..++
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~---e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak- 102 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQL---ESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAK- 102 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHH-
Confidence 334444445555555555555555555555554433 345555555555555555 23333334444444444433
Q ss_pred HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
.+...|+.++.+|......|+.+.-.|..++...+..+
T Consensus 103 ----------------~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 103 ----------------ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555444
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.65 E-value=1.1 Score=51.91 Aligned_cols=172 Identities=26% Similarity=0.345 Sum_probs=119.4
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK---GQLLLLK 248 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K---~qi~~Lk 248 (520)
+.|-.|..+|..++..+......|..+++|..++..++.+ +...++....||+.||++|...-.+.+ .++..++
T Consensus 343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~---l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k 419 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED---LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK 419 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999998887765 677888888999999999765555443 4566666
Q ss_pred HHHhh---------hhHHHHHH-------------hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 249 QQVSG---------LQAKEEEA-------------IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 249 q~V~~---------Lq~~Eee~-------------~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
.++.. +...=+++ .+..+ -..+...+..+..++.+++..+..||-+..+....|..+
T Consensus 420 ~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~-e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~ 498 (775)
T PF10174_consen 420 ERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERA-EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDA 498 (775)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 66661 10000000 00111 123455677788899999999999999999999999988
Q ss_pred HHHHhhcCCCc-h-hHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 307 ESKIASLSNMT-E-SEKVAKAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 307 E~~~~~lsnv~-e-~~~Va~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
...++.+...- . ...+..+.=++...|..-++|.+|++.++
T Consensus 499 kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 499 KEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred hhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 87776543322 1 12344555566666777777888888755
No 33
>PRK01156 chromosome segregation protein; Provisional
Probab=96.58 E-value=2.1 Score=49.32 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=41.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...+..+|..|..-+++|.++...|+.++-++-.+.+... ..--++|..+..++..+..++..+..+-..|.+....|
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~ 548 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY 548 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777666666665554222211100 01111223333344444444444444444455555555
Q ss_pred HhHHHHHHHH
Q 046111 213 SYVKKELEVA 222 (520)
Q Consensus 213 ~~v~~ELe~a 222 (520)
..+.+++...
T Consensus 549 ~~l~~~~~~~ 558 (895)
T PRK01156 549 EEIKNRYKSL 558 (895)
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.58 E-value=0.71 Score=46.82 Aligned_cols=28 Identities=43% Similarity=0.606 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 277 DLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
.++.+|.+++..-..+..+..+|+-+|+
T Consensus 146 ~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 146 RLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555555555555544433
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.53 E-value=1.7 Score=48.66 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
..+..|+..|.....+.+.|..+...+...++.|.. +...+..+++.++.+|+.|...+.....+.++
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~---E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKE---ERESLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777766666554 33455666777777887777777666555533
No 36
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.42 E-value=0.0064 Score=68.50 Aligned_cols=212 Identities=23% Similarity=0.318 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
...++..|...+..|+..-..+..++.+|. .++.....+..||+++.+-.-|++.|+.-+.++..|.......-. ...
T Consensus 362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~-~~~ 440 (722)
T PF05557_consen 362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQ-DTQ 440 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchh-HHH
Confidence 456777777777777766666666666553 345566678889999999999999999888888887765543210 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH-----HHhhHHhHHHHHHHHHHHh
Q 046111 215 VKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK-----KLKSVKDLEVEVVELKRKN 289 (520)
Q Consensus 215 v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek-----Kl~~l~~LE~Ev~ELRr~N 289 (520)
-..+++..-..+......+.....+....+...++....+.. +....+....... -...+..|..++.+|++.+
T Consensus 441 ~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~-e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~ 519 (722)
T PF05557_consen 441 RIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEA-ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELEREN 519 (722)
T ss_dssp ------------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111111112222222222222211111 1010000000000 1123455777777777777
Q ss_pred HHHHHHHHHHHHhHHH---------HHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 290 KELQIEKRELLVKLDA---------AESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 290 k~LQ~EK~eL~~kL~~---------AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
..|+.++..|..+|.. ...+|-.+.+-|-.+.....+..+..||.+|++|..+|..|..+
T Consensus 520 ~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 520 ERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7777777777777764 11233333444444444445799999999999999999766544
No 37
>PRK01156 chromosome segregation protein; Provisional
Probab=96.40 E-value=2.7 Score=48.47 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=26.0
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcchhhhhHHHHHHHHHhhhh
Q 046111 128 VYETEMADNARELERLRSLVLELQEREVKLEGELLE-----YYGLKEQESDIVELQRQLKIKT 185 (520)
Q Consensus 128 ~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLE-----y~~LKEQEa~v~ELe~~L~~k~ 185 (520)
.|......+..+|..|.+-++.+...-..++..+-. +..|++....+.+++..|..-.
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~~ 535 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIK 535 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556555555555444443333333222 3334444444444444443333
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.39 E-value=1.3 Score=51.78 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=48.0
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cchh-------hhhHHHHHHHHHhhhhhHHH
Q 046111 125 KNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYY--------GLKE-------QESDIVELQRQLKIKTVEID 189 (520)
Q Consensus 125 ~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~--------~LKE-------QEa~v~ELe~~L~~k~~Ei~ 189 (520)
..+.|-...--++..+.++.+.+..||-+=.+||+|+--+- .||| ..+.+-+|+..|.+++.+|-
T Consensus 86 etriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 86 ETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 35667666666788899999999999999999988876542 2333 34556677888888877775
Q ss_pred H
Q 046111 190 M 190 (520)
Q Consensus 190 ~ 190 (520)
+
T Consensus 166 ~ 166 (1265)
T KOG0976|consen 166 M 166 (1265)
T ss_pred H
Confidence 5
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.36 E-value=1.6 Score=45.32 Aligned_cols=58 Identities=34% Similarity=0.393 Sum_probs=31.5
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH
Q 046111 265 DVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV 322 (520)
Q Consensus 265 d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V 322 (520)
+.+++.+-+.+.+|+.++.+++.....+..++.++...+..|+.........|..++.
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3334444445555666666666666666666666655555555544444555544433
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.13 E-value=2.8 Score=52.01 Aligned_cols=163 Identities=13% Similarity=0.118 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKK 217 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ 217 (520)
.-+.++...+.+|..+...|+.+.-.+..-++....+..+...+......++.|...+...+.....++.++ ..+..
T Consensus 307 ~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel---eelee 383 (1486)
T PRK04863 307 YRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ---EENEA 383 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 446667777778888888887776555443333332222333333333333334333333333333332222 23334
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHH---hhhhHHHHHHHhhHHhHHHHHHHHHHHhHH
Q 046111 218 ELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEA---IKKDVELEKKLKSVKDLEVEVVELKRKNKE 291 (520)
Q Consensus 218 ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~---~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~ 291 (520)
+++.+..++..|+.++. ........++..+++.+..++.-+.=- .-.+.+++. .+..++..+.+++....+
T Consensus 384 EleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~---~LenF~aklee~e~qL~e 460 (1486)
T PRK04863 384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED---WLEEFQAKEQEATEELLS 460 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44444455555544433 334444455555555555554443211 001223332 234444444444444444
Q ss_pred HHHHHHHHHHhHHHH
Q 046111 292 LQIEKRELLVKLDAA 306 (520)
Q Consensus 292 LQ~EK~eL~~kL~~A 306 (520)
|+.+...+...++.-
T Consensus 461 lE~kL~~lea~leql 475 (1486)
T PRK04863 461 LEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.12 E-value=3.8 Score=50.91 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKI----------KELQRQIQLDANQTKGQLLL 246 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki----------r~Lqkk~~~~a~q~K~qi~~ 246 (520)
+++++.....++..+..++..++.+...++.++..+...+..++.|+.=| ......+.....+...++..
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~e 460 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS 460 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555556666666667777777777777777444 33344444555555556666
Q ss_pred HHHHHhhhhHHH
Q 046111 247 LKQQVSGLQAKE 258 (520)
Q Consensus 247 Lkq~V~~Lq~~E 258 (520)
++++...+++.-
T Consensus 461 lE~kL~~lea~l 472 (1486)
T PRK04863 461 LEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.10 E-value=0.74 Score=51.49 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhH------------HHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 190 MLNITINSLQAERKKLQEQIAQSSYV------------KKELEVARNKIKEL---QRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 190 ~L~~kI~sLEsEn~RL~~qv~e~~~v------------~~ELe~ar~Kir~L---qkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
.+-.+|-.||+||.+|+.++.....+ -.||..||.-++.- +.+++.+..+.+.++..|+.++...
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445556666666666555443322 13444444444333 2233444444444444455444443
Q ss_pred hHHH-----------HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 255 QAKE-----------EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 255 q~~E-----------ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
+..- --+..-.+++..-.-+++.||.++..|++-|.+|..+...+-..|+.+
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2111 001112333444445577888888888888888887777776666543
No 43
>PRK09039 hypothetical protein; Validated
Probab=96.06 E-value=0.41 Score=50.24 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEA 261 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~ 261 (520)
..+|..+...+..+++++.+|+.+.+..... ...+..+...|++++. .....+..++..|+++++.|+++
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~---~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q---- 152 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLAELAGA---GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ---- 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----
Confidence 3445555555556666666666655532211 1122233333333332 33344455566666666666655
Q ss_pred hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 262 IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 262 ~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
+..|+.++.+.....++.|.+..+|-.+|+.|
T Consensus 153 -------------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 -------------LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666655
No 44
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.06 E-value=0.0016 Score=73.24 Aligned_cols=230 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhhhHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYY----GLKEQESDIVELQRQLKIKTVEI------DMLNITINSLQAERKKL 205 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~----~LKEQEa~v~ELe~~L~~k~~Ei------~~L~~kI~sLEsEn~RL 205 (520)
+..++..|+..+..++.+-...+.++-++. .+.+.+..+.+|+.+|....... ...-..|..||.+|.+|
T Consensus 190 l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l 269 (722)
T PF05557_consen 190 LESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRL 269 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433333333331 23344666666766555433322 12234678899999999
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111 206 QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL 285 (520)
Q Consensus 206 ~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL 285 (520)
.+++..+....+-.+.++.+++-|++|+... +...+++..|+=++..|+.+-..-..-....--....-.+|-..+..|
T Consensus 270 ~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~l 348 (722)
T PF05557_consen 270 REELKHLRQSQENVELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQL 348 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998864 455556666655555555543221111100000111222333334444
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 046111 286 KRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNA 365 (520)
Q Consensus 286 Rr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNA 365 (520)
|..+.-|..+++.+...+...+..+ ..+ ..-.+.+..++..++.....+.+.+..|+.-+.--+.|.=|||=+=.
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~---~~L--e~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEI---QEL--EQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333222222211 111 11223344556666666666777778888888888888888876555
Q ss_pred HHHHHH
Q 046111 366 CLRYEL 371 (520)
Q Consensus 366 CLR~EL 371 (520)
+.--|.
T Consensus 424 syd~e~ 429 (722)
T PF05557_consen 424 SYDKEE 429 (722)
T ss_dssp ------
T ss_pred Hhhhhh
Confidence 544444
No 45
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.93 E-value=2.3 Score=48.22 Aligned_cols=134 Identities=25% Similarity=0.261 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHH-HHHHHHH-----HHHHHHHHHhHHhHHHHHH
Q 046111 147 VLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNIT-INSLQAE-----RKKLQEQIAQSSYVKKELE 220 (520)
Q Consensus 147 VeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-I~sLEsE-----n~RL~~qv~e~~~v~~ELe 220 (520)
+.+.++--..|+--.-+|-++|.|+..|.-|+..+..-....+..-.. +...+.. +++...-..+-..+.++++
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444566777888888888888877655554443332 2222222 2223333333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 046111 221 VARNKIKELQRQIQLDANQTKGQLLLLKQQ----VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKR 287 (520)
Q Consensus 221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~----V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr 287 (520)
.+..+|..||+.+. .+..++..++.. |+. +-.++.--..+++.--+++-.||-|+..||-
T Consensus 200 ~le~ki~~lq~a~~----~t~~el~~~~s~~dee~~~---k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 200 ELEKKISSLQSAIE----DTQNELFDLKSKYDEEVAA---KAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHH----hhhhHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544443 344455555555 444 2233444555677777888888888888875
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.92 E-value=2.4 Score=48.82 Aligned_cols=166 Identities=21% Similarity=0.270 Sum_probs=83.8
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111 129 YETEMADNARELERLRSLVLELQER-------EVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQA 200 (520)
Q Consensus 129 ~~~~~~~~~~EI~~Lr~lVeeLqER-------E~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 200 (520)
-+.+...+..||...|..=.+|+-+ |..|..+|-....=-|| +..+..|.+....-...+..|.+++...+.
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555555 55555555444331111 223444555555555556667777777777
Q ss_pred HHHHHHHHHHhHHhHHHHHH--HHHH---------H----HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111 201 ERKKLQEQIAQSSYVKKELE--VARN---------K----IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265 (520)
Q Consensus 201 En~RL~~qv~e~~~v~~ELe--~ar~---------K----ir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d 265 (520)
....|++|+.+-.+.+.+-+ +||. . +|.=.+++..+..+-+.++....+++..|+..-.+....+
T Consensus 503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~ 582 (697)
T PF09726_consen 503 QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE 582 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666655432 2222 1 3333344444444444444444444433333322111100
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 266 VELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
++-+.+++.|--+..-+|+.+..|-.-|.
T Consensus 583 ----------~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 583 ----------KESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred ----------hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22244555566666666666666666665
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.89 E-value=4.9 Score=48.23 Aligned_cols=121 Identities=23% Similarity=0.366 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHHHHHhhhhHHH-HHHhhhhHHHHHHHhhHHhHHHHHH
Q 046111 215 VKKELEVARNKIKELQR----------QIQLDANQTKGQLLLLKQQVSGLQAKE-EEAIKKDVELEKKLKSVKDLEVEVV 283 (520)
Q Consensus 215 v~~ELe~ar~Kir~Lqk----------k~~~~a~q~K~qi~~Lkq~V~~Lq~~E-ee~~~~d~E~EkKl~~l~~LE~Ev~ 283 (520)
-.+|++.||+-++.+.+ ......++.|.....+..+|..+++.. .+. ..++.+.-+.++.|+.+|+
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~---~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL---GSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHH
Confidence 34556666655555555 344455555666666666666666655 222 2223333344456666776
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111 284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR 350 (520)
Q Consensus 284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR 350 (520)
.|+-.+..|-.+-.++..++-.-+. -...++.+...||+.=+.-+.++..|.+.-
T Consensus 412 k~e~~~~~L~~e~~~~~~~~~~~~e------------e~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 412 KLEEQINSLREELNEVKEKAKEEEE------------EKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666666666666554442221 112245667778887777777777775543
No 48
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.82 E-value=2.2 Score=42.23 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQIQLDANQTK---GQLLLLKQQVSGLQAK 257 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~~~a~q~K---~qi~~Lkq~V~~Lq~~ 257 (520)
..|++.|+--+.+||+++.+|.++..+.- .+.++++....++..|+........+++ .....|+-||..++.-
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56777777777788888887777765443 3444444444443333332222222221 2445667777665444
Q ss_pred HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 258 EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 258 Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+..+++.+..+.+.+.+|..=|+|.|.++-+|-.|++.|-..|.
T Consensus 146 ---~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 146 ---ICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688999999999999999999999999999999999976664
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.79 E-value=0.37 Score=49.83 Aligned_cols=114 Identities=26% Similarity=0.353 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-----hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGLKEQE-----SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQE-----a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
+..|..++..|.+|-..|+.++-....+...- ..+..|..+|.....+|..++.++..|+.+...+...+.+
T Consensus 172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~--- 248 (325)
T PF08317_consen 172 LEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE--- 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44444444444444444444444333332211 1234444444444444444444444444444444444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 215 VKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 215 v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
+.++.......|..+++.+......+..++..||.++..||.
T Consensus 249 ~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 249 LEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 223333444445555555554444555555555555554443
No 50
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.79 E-value=3.8 Score=44.76 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Q 046111 135 DNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI-AQSS 213 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv-~e~~ 213 (520)
....||..+...+..-+.+-..|+.+ ||+++..+..++.+|..-...++.++..|..+......|+.|- .+-.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~ 115 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQ------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR 115 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999887 5778999999999999999999999999999999999999776 4555
Q ss_pred hHHHHHHHHH
Q 046111 214 YVKKELEVAR 223 (520)
Q Consensus 214 ~v~~ELe~ar 223 (520)
.+.+.|.++.
T Consensus 116 ~La~~L~A~~ 125 (420)
T COG4942 116 RLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 51
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.76 E-value=0.0026 Score=71.57 Aligned_cols=227 Identities=26% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHH---HHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLK---IKTVEIDMLNITINSLQAERKK---LQEQI 209 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLEsEn~R---L~~qv 209 (520)
..++..|+..++.|++.-.+++..+.+|. .+.+.+..+.+|+.+.. ..+.++..|+..+..|.....| |+..|
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556666677777666666666666664 22344555655655432 3344555555555555444333 44455
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHH
Q 046111 210 AQSSYVKKELEVARNKIKELQRQIQL-------------DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVK 276 (520)
Q Consensus 210 ~e~~~v~~ELe~ar~Kir~Lqkk~~~-------------~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~ 276 (520)
.-|.+=.++++..|.+++.|+-+... -+...+.++..++++|..|+.+-.+...+. .
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~----------~ 387 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRA----------D 387 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 55555555555555555555443321 233346778888888887776654433222 2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhHH----------HHHHH---H--------hhcCCCchhHH-HHHHHHHHHhhhh
Q 046111 277 DLEVEVVELKRKNKELQIEKRELLVKLD----------AAESK---I--------ASLSNMTESEK-VAKAREEVNNLRH 334 (520)
Q Consensus 277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~----------~AE~~---~--------~~lsnv~e~~~-Va~a~eE~~~LR~ 334 (520)
.|+.+...|+..+..|+.++..|....+ .++.. . ....++. .++ -..+++.+-+|.+
T Consensus 388 ~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~-~El~~~~l~erl~rLe~ 466 (713)
T PF05622_consen 388 KLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLS-AELNPAELRERLLRLEH 466 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchh-hhccchHHHHHHHHHHH
Confidence 3333444444444444444333322111 11111 0 0011111 122 2345678889999
Q ss_pred hcHHHHHHHHHHhhcccchhh-HHHHHHHHHHHHHHHHhhc
Q 046111 335 ANDDLLKQVEGLQMNRFGEVE-ELVYLRWVNACLRYELRNY 374 (520)
Q Consensus 335 ~NEdL~kqVEqLq~dR~seVE-ELVYLRWVNACLR~ELrn~ 374 (520)
+|..|...++++...++..+. +|-=....+.+|.-+.+..
T Consensus 467 ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 467 ENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888988877876653 3334455666777666544
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.76 E-value=5.9 Score=47.92 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=43.6
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
|......+..++..+...+..++.+...++.+|-.+ ...+..+..++.....++.-...++..|..+...++.+
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI------NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444445566777777777777777766666655432 23455555555555555555555555555555555544
Q ss_pred HH
Q 046111 209 IA 210 (520)
Q Consensus 209 v~ 210 (520)
+.
T Consensus 672 ~~ 673 (1201)
T PF12128_consen 672 IE 673 (1201)
T ss_pred HH
Confidence 43
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.67 E-value=2.8 Score=42.26 Aligned_cols=114 Identities=23% Similarity=0.346 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH-HHHHhhhhHH----HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHH
Q 046111 224 NKIKELQRQIQLDANQTKGQLLLL-KQQVSGLQAK----EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRE 298 (520)
Q Consensus 224 ~Kir~Lqkk~~~~a~q~K~qi~~L-kq~V~~Lq~~----Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~e 298 (520)
..++.++.+....+.+++.++... +.++..++.. ......-..|+-.-...+..|..++.-|+..|..|+....+
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 345556666666666666543322 2223333221 11222223334444445677777777777777777777777
Q ss_pred HHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111 299 LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 299 L~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEq 345 (520)
|-.++...-... ...+...+.++..+|..-.....+.+.
T Consensus 249 le~~~~~~~~~~--------~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 249 LEQRLDEEREEY--------QAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 766665433222 234444455555555544444444433
No 54
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.66 E-value=2.2 Score=45.09 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=89.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhhhh---HHHHHHHHHhhhhhHHHHHHHHH
Q 046111 131 TEMADNARELERLRSLVLELQEREVKLEGELLEYY------------GLKEQES---DIVELQRQLKIKTVEIDMLNITI 195 (520)
Q Consensus 131 ~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~------------~LKEQEa---~v~ELe~~L~~k~~Ei~~L~~kI 195 (520)
.+.+....|-+.++.|++.|++|=..|+...-++- -.+++.+ .+.+...+-..-..|++.|..++
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl 95 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKL 95 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678999999999999999888888665443 1123222 23445555556667777888888
Q ss_pred HHHHHHHHHHHHHHHh----------------HHhHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhH
Q 046111 196 NSLQAERKKLQEQIAQ----------------SSYVKKELEVARNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 196 ~sLEsEn~RL~~qv~e----------------~~~v~~ELe~ar~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
..++.+++-|+..++. ...++.+||.++.++..|++-++.. -+....+-...+++|..|..
T Consensus 96 ~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 96 NEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNH 175 (319)
T ss_pred HHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777776654 5678889999999999999988853 34555666667777777644
Q ss_pred HH
Q 046111 257 KE 258 (520)
Q Consensus 257 ~E 258 (520)
.=
T Consensus 176 EL 177 (319)
T PF09789_consen 176 EL 177 (319)
T ss_pred HH
Confidence 43
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.65 E-value=0.42 Score=49.79 Aligned_cols=116 Identities=24% Similarity=0.309 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQ-----ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
..+..|-.++-.|.++-..|+.++-....+.+. ...+..++..|+.-..+|.....++..++.+...+...+.+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~- 243 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED- 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445555566666666666666666555554444 22345555566666666666666666666555555554443
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 213 SYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
...+....+..|..+++.+......+..++..|+.++..||.
T Consensus 244 --~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 244 --LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666666666666666554
No 56
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.65 E-value=1.6 Score=43.52 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=68.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
.--..||-.||..+++++-.-...+.++.+..+ +......+...+++|..+..++..|+.+|..|+.|...|+..++..
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334689999999999998888888888887775 5666667888999999999999999999999999999999988886
No 57
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.56 E-value=3.6 Score=50.11 Aligned_cols=66 Identities=29% Similarity=0.393 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH----------HHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 279 EVEVVELKRKNKELQIEKRE----------LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 279 E~Ev~ELRr~Nk~LQ~EK~e----------L~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
|.|..=||.-|+.||.|.|+ |.|||-.||.. +.-|++-+...-++|+.+-||||.|+.
T Consensus 1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea------------~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA------------LTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677779999999875 55666655532 233566677777889999999999999
Q ss_pred cccchhhH
Q 046111 349 NRFGEVEE 356 (520)
Q Consensus 349 dR~seVEE 356 (520)
.+-.++.=
T Consensus 1240 kh~~e~~t 1247 (1320)
T PLN03188 1240 KHENEIST 1247 (1320)
T ss_pred HHHHHHHH
Confidence 98666543
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.50 E-value=0.66 Score=42.49 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQ 249 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq 249 (520)
..|-.|..+|.....|+..+...+..|+.+...+.+++.....-..++......+..|+.+++..-.+--.=+-+|.+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456678888888899999999999999999999999999998888888887777777777776555544444444433
No 59
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=4.5 Score=44.76 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ-------------IAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q-------------v~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
..|.+||..|.+.+.||..-..--..|.++.++|-.. +.-..+...++-..-..-++||+++....+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999986555556666666655443 333344444455555666778888887777
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH---HHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111 239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK---KLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN 315 (520)
Q Consensus 239 q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek---Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn 315 (520)
+--.......+.|-. .++.|+...+ =+.+|..-=.++.|+=+.+-.+-.|-++|-.++..-+.+. .+.+
T Consensus 425 ~L~Rsfavtdellf~-------sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~-~l~s 496 (521)
T KOG1937|consen 425 ALNRSFAVTDELLFM-------SAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQ-YLKS 496 (521)
T ss_pred HHhhhHHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHH-HHhh
Confidence 777777777666543 2344444443 3455666667999999999999999999999998765433 2233
Q ss_pred CchhHHHHHHHHHHHhhhhhcHHHHHHH
Q 046111 316 MTESEKVAKAREEVNNLRHANDDLLKQV 343 (520)
Q Consensus 316 v~e~~~Va~a~eE~~~LR~~NEdL~kqV 343 (520)
. .++.+++..+|+.|+.|.++|
T Consensus 497 l------Ekl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 497 L------EKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHH
Confidence 2 456789999999999999887
No 60
>PRK11637 AmiB activator; Provisional
Probab=95.41 E-value=4.6 Score=43.10 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
+..+|..+...+..++.....++.++-.+ +..+..++.+|.....+|..++.+|..++.+...+++++......
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l------~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQ------EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555655555554332 333444444444444455555555555555555554444444444
Q ss_pred HHH
Q 046111 216 KKE 218 (520)
Q Consensus 216 ~~E 218 (520)
.+.
T Consensus 126 l~~ 128 (428)
T PRK11637 126 LAA 128 (428)
T ss_pred HHH
Confidence 433
No 61
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.29 E-value=3.2 Score=40.64 Aligned_cols=146 Identities=19% Similarity=0.277 Sum_probs=103.3
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
-.+|-.-|..|+.-|.+++.++...+..+.+. ..|...|..-+..++.+...|+.++..|
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei--------------------~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEI--------------------SQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46667779999999999999998887766554 4567889999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111 213 SYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL 292 (520)
Q Consensus 213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L 292 (520)
.+-...|..++++++.+++++... +-+-..|.|++..++..-.+...+.. ..+.++-... --.|.-|
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~L----k~e~evL~qr~~kle~ErdeL~~kf~------~~i~evqQk~---~~kn~lL 148 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDL----KWEHEVLEQRFEKLEQERDELYRKFE------SAIQEVQQKT---GLKNLLL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHH
Confidence 999999999999999998888754 44456788888888776544332211 1122222111 1133445
Q ss_pred HHHHHHHHHhHHHHHHHHh
Q 046111 293 QIEKRELLVKLDAAESKIA 311 (520)
Q Consensus 293 Q~EK~eL~~kL~~AE~~~~ 311 (520)
+.--..|...|+..++++.
T Consensus 149 EkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666554
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.27 E-value=4.8 Score=42.48 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046111 141 ERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 141 ~~Lr~lVeeLqERE~~LE~eL 161 (520)
+.|+..|.+|+..=..|..+|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El 43 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKREL 43 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 677777777777655555544
No 63
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.27 E-value=11 Score=47.77 Aligned_cols=109 Identities=28% Similarity=0.284 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----------
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ----------- 206 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~----------- 206 (520)
.+..++-.-+++|+++=.+|+.++. -|++.|.....++..+...+..|+.++.+-.
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~-------------plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k 1302 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELA-------------PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK 1302 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555555555555444 4555555555555555555555555544332
Q ss_pred --------HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111 207 --------EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 207 --------~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
....++..+.+||+.....|-+|..++....++.+.++..+...+..+...-.
T Consensus 1303 ~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ 1363 (1822)
T KOG4674|consen 1303 DSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE 1363 (1822)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22335556667777777777777777777777777777777776666655543
No 64
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.22 E-value=2.9 Score=41.41 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=30.2
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
.++.||.-....=.....++...+.|..+|..|+.++ ..|...+..|-+.+++|-..|..-+.
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra------------e~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA------------EFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555443 22344455555555555555544433
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.21 E-value=7.8 Score=47.21 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046111 142 RLRSLVLELQEREVKLEG--ELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKEL 219 (520)
Q Consensus 142 ~Lr~lVeeLqERE~~LE~--eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~EL 219 (520)
.|.+.+..+.-++..|.. +-+-....++=+..+.+.++++..-..++..+....+-++..|..++.........+++|
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~l 548 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQL 548 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444442 111122233333344455555555555555666666666666666666666666666776
Q ss_pred HHH
Q 046111 220 EVA 222 (520)
Q Consensus 220 e~a 222 (520)
+.+
T Consensus 549 e~~ 551 (1317)
T KOG0612|consen 549 EEA 551 (1317)
T ss_pred HHh
Confidence 643
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.13 E-value=2.5 Score=38.47 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=48.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHH
Q 046111 205 LQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVE 284 (520)
Q Consensus 205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~E 284 (520)
.+.++.-+....++|..+|..+..++.++......+..--..|.+.-..+... -..|+.++.+
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q-----------------k~~le~e~~~ 109 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ-----------------KEQLEKELSE 109 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHH
Confidence 34455566666666666666665555544433332222222222211111111 1458999999
Q ss_pred HHHHhHHHHHHHHHHHHhHHH
Q 046111 285 LKRKNKELQIEKRELLVKLDA 305 (520)
Q Consensus 285 LRr~Nk~LQ~EK~eL~~kL~~ 305 (520)
+++...+|..+|.-|--.|++
T Consensus 110 ~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 110 LEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998777763
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.02 E-value=2.6 Score=51.00 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCC--chhHHHHHHHHHHHhhhhhcHHHHHHHHH------Hhh
Q 046111 277 DLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNM--TESEKVAKAREEVNNLRHANDDLLKQVEG------LQM 348 (520)
Q Consensus 277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv--~e~~~Va~a~eE~~~LR~~NEdL~kqVEq------Lq~ 348 (520)
.++-++.+|...+..||..+..|.....--.+-+..+... ...+|++.+++++..|-.+|+.+..++.. .+.
T Consensus 578 ~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~ 657 (1317)
T KOG0612|consen 578 QELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQ 657 (1317)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333666777778777777766654332222211111111 13567788888888888888776655443 344
Q ss_pred cccchhhH
Q 046111 349 NRFGEVEE 356 (520)
Q Consensus 349 dR~seVEE 356 (520)
.+++++|+
T Consensus 658 e~~~~~ek 665 (1317)
T KOG0612|consen 658 ERISDSEK 665 (1317)
T ss_pred HHHHHHHH
Confidence 56666666
No 68
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.00 E-value=0.0065 Score=68.43 Aligned_cols=175 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~ 268 (520)
..+..++..|+.|+.++.+...++..-.. .....|..|+.+.......++ ....|+..|..|..+-..+.+...++
T Consensus 242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e---~le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 242 ADLRAQLRRLREELERLEEQRDDLKIELE---ELEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444432222 222334444444333222221 23333333333333332222222222
Q ss_pred ---HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH---HHhhcCC-Cc--hhHHHHHHHHHHHhhhhhcHHH
Q 046111 269 ---EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES---KIASLSN-MT--ESEKVAKAREEVNNLRHANDDL 339 (520)
Q Consensus 269 ---EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~---~~~~lsn-v~--e~~~Va~a~eE~~~LR~~NEdL 339 (520)
.+|+..+.+|...|.+|+-.|..|...+..|-..|..+-+ ++..+.. +. +... ......+..|...|..|
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l-~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL-SEESRRADKLEFENKQL 396 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 2466666666666666666666666666555444443322 1111000 00 0011 11234455666777777
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 046111 340 LKQVEGLQMNRFGEVEELVYLRWVNACLR 368 (520)
Q Consensus 340 ~kqVEqLq~dR~seVEELVYLRWVNACLR 368 (520)
...++.|+..+-.-+.|.--|||.+.-|+
T Consensus 397 ~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 397 EEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888887777777778888888766553
No 69
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.95 E-value=4.2 Score=42.89 Aligned_cols=74 Identities=34% Similarity=0.441 Sum_probs=42.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH-hh----cCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchh
Q 046111 280 VEVVELKRKNKELQIEKRELLVKLDAAESKI-AS----LSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEV 354 (520)
Q Consensus 280 ~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~-~~----lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seV 354 (520)
.-...|-|...+|+.||-+|...|..=+..+ .. +..+ +.++++ -..+..+||.+.-||-+.+|+=|
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L-e~e~~~-~q~~le~Lr~EKVdlEn~LE~EQ------- 176 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL-EKEKSA-KQEELERLRREKVDLENTLEQEQ------- 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH-hHHHHHHHHHHHHhHHHHHHHHH-------
Confidence 3445677777888888888888887644221 11 1111 111221 13556677777777777777643
Q ss_pred hHHHHHHH
Q 046111 355 EELVYLRW 362 (520)
Q Consensus 355 EELVYLRW 362 (520)
|-||.-=|
T Consensus 177 E~lvN~L~ 184 (310)
T PF09755_consen 177 EALVNRLW 184 (310)
T ss_pred HHHHHHHH
Confidence 55665555
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.94 E-value=7 Score=44.53 Aligned_cols=31 Identities=26% Similarity=0.206 Sum_probs=17.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLE 163 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLE 163 (520)
+.....+|..|++--.....|-..|+..|-+
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555566666555
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.84 E-value=2.5 Score=46.41 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 046111 149 ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKE 228 (520)
Q Consensus 149 eLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~ 228 (520)
-..+||..|+.+.++. .++.|+.+-..-...|-.|.--+..|..+.+|+.+++....--......-+..+..
T Consensus 289 ~k~eReasle~Enlqm--------r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d 360 (502)
T KOG0982|consen 289 IKKEREASLEKENLQM--------RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMND 360 (502)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444422 22333333333334444444455555555555555544444333333333333333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 229 LQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 229 Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
.=++++.+-+.+.+-|.-|+.+...++..--..+.. -.-.---++-+||.||..||.-|.-|..+|.+|--..
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p--~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRRRKLVLANP--VRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence 334466666666666666666665555443221100 0000114567899999999999999999999985443
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.83 E-value=12 Score=44.73 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=78.7
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 046111 143 LRSLVLELQER-------EVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEID----MLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 143 Lr~lVeeLqER-------E~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~----~L~~kI~sLEsEn~RL~~qv~e 211 (520)
||..|++|.|+ ...=...|+|+..||=|---++|...++-.+.+.+. .-+.....+++=..++..++++
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554 444456788888888777777776666655544332 2333333344434444444433
Q ss_pred HHh------------------HHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHhhhhHHH----
Q 046111 212 SSY------------------VKKELEVARNKIKELQRQIQLDA-----------NQTKGQLLLLKQQVSGLQAKE---- 258 (520)
Q Consensus 212 ~~~------------------v~~ELe~ar~Kir~Lqkk~~~~a-----------~q~K~qi~~Lkq~V~~Lq~~E---- 258 (520)
+.- +.-|++.++.++.+|.--+...- ..+--|..-|-|+...|+..=
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23344444444444433332211 112234444444444443321
Q ss_pred -------HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 259 -------EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 259 -------ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
...-+-..|+|+|-+.+.+|..-.+-|.|....++....+|-...|+|
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122233445555555555555555555555555555555555555554
No 73
>PRK09039 hypothetical protein; Validated
Probab=94.82 E-value=1.5 Score=46.17 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
..++..+|..|+.....++.+..+|+..+-.-+. ..+-+..+..|+..|.....++......|..|..+...|++|
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q--- 152 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ--- 152 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---
Confidence 3456677777777777777777777776554433 233355566666666666666666666666666666666655
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 046111 212 SSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqk 231 (520)
+..+..+|+.++.+.+..+.
T Consensus 153 la~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 153 LAALEAALDASEKRDRESQA 172 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444433333
No 74
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.81 E-value=1.7 Score=42.51 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=80.5
Q ss_pred HHhhhcc--hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 161 LLEYYGL--KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 161 LLEy~~L--KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
+=.||.= ...-..|.-|..++..-..........+..+..||.+| ++-|..|+.++..|++++.. ..
T Consensus 14 iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L----------~epL~~a~~e~~eL~k~L~~-y~ 82 (201)
T PF13851_consen 14 IKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRL----------SEPLKKAEEEVEELRKQLKN-YE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH-HH
Confidence 3446651 23333445555555544445555555555666666654 56677888889999999886 66
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111 239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAE 307 (520)
Q Consensus 239 q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE 307 (520)
+.|..+..++.++..++.. +++|+.|-.-|......|+.|..+|-.|..++=
T Consensus 83 kdK~~L~~~k~rl~~~ek~-----------------l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKE-----------------LKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788887777777654322 577888888888888999999999988887664
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.72 E-value=10 Score=43.36 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 191 LNITINSLQAERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
|...+..|+.|...|..++... ..+-.-...-..++.+|.++++......
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444433322 2222222333566777777666554443
No 76
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.61 E-value=1.6 Score=51.96 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
||-++.-|++....|+.++.
T Consensus 299 leseiiqlkqkl~dm~~erd 318 (1195)
T KOG4643|consen 299 LESEIIQLKQKLDDMRSERD 318 (1195)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444443
No 77
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.59 E-value=4.3 Score=48.41 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=24.7
Q ss_pred hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
+.|.++...-..|+.-+.-++.-+..|...|..|+-+-+++++
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666555555555543
No 78
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.59 E-value=11 Score=46.43 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046111 140 LERLRSLVLELQEREVKL 157 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~L 157 (520)
|..|...+.+|.++-..+
T Consensus 744 i~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 744 IAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 79
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=94.55 E-value=0.14 Score=45.42 Aligned_cols=91 Identities=29% Similarity=0.396 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
..+|..+|..-..|...|+++|.-|+.+|++|..++..|..--..++. ++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~-----------------------------~~~ 53 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS-----------------------------LAK 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------ccc
Confidence 578999999999999999999999999999999988877654443321 011
Q ss_pred hhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHH
Q 046111 254 LQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 254 Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
+-.... -..+.+.++..++. .+.++.+|.+...+||.|||
T Consensus 54 ~~~g~~-~~~~~~~l~~eLk~---a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 54 LSEGGS-PSGREAELQEELKL---AREQINELSGKVMELQYENR 93 (96)
T ss_pred CCCCCC-CccccHHHHHHHHH---HHHHHHHHhhHHHHHhhccc
Confidence 111110 02233345555555 56677888888888888887
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.41 E-value=5.8 Score=39.32 Aligned_cols=217 Identities=21% Similarity=0.210 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046111 141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELE 220 (520)
Q Consensus 141 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe 220 (520)
..|+.-+...++|...++.+|-+. +..+.....++..|+.+|..|+.+..+....+.....=..+++
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~-------------~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEA-------------EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555555555554443332 2222333455555666666665555554443332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh----HHhHHHHHHHHHHHhHHHHHHH
Q 046111 221 VARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEK 296 (520)
Q Consensus 221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~----l~~LE~Ev~ELRr~Nk~LQ~EK 296 (520)
..-..+..-.+.+.......-..+..|..++......-.++-.+..++..|+.. |...|.-+..+-....+|+.+.
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 222222222222222223333444455555555444444444455555544433 2223334444444555555555
Q ss_pred HHHHHhHHHHHHHHhhcCCCchhHHHHH---HHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 046111 297 RELLVKLDAAESKIASLSNMTESEKVAK---AREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYEL 371 (520)
Q Consensus 297 ~eL~~kL~~AE~~~~~lsnv~e~~~Va~---a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~EL 371 (520)
..+.-.|.+.++.-...+.. +..+-.+ ..+.....-..-+..-+.|..|+..-..=-.+|.-.+==+.|++.||
T Consensus 151 ~~~~~~lk~lE~~~~~~~~r-e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 151 KSVGNNLKSLEASEEKASER-EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444444322111111 1111111 11111111112233445555555444433445555666666777666
No 81
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.18 E-value=9.7 Score=40.95 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR 350 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR 350 (520)
..|...+.+++.....|+.+...|...++..+..+..++.. ..-......+++..+..=+.|.+..++.+...
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~--~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~ 385 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEV--EAELTQLNRDYEVNKSNYEQLLTRRESAEVSK 385 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555556666666666666666666666666665555543 33334467777777777788888888887663
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.09 E-value=7.5 Score=44.11 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=82.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
.+++.+++.-++++..+...+...+.++.+++.++.-..++..=|.-+-.-| .|++.....+.+.+..|.++-...
T Consensus 345 ~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni----~kL~~~v~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 345 EELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI----AKLQALVEASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555554444443333333333 344444445555555555554332
Q ss_pred hHHHHHHhhhhHHHHH----HHhhHHhHHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHhhcCC-CchhHHHHHHH
Q 046111 255 QAKEEEAIKKDVELEK----KLKSVKDLEVEVVELKRKNKELQIEK---RELLVKLDAAESKIASLSN-MTESEKVAKAR 326 (520)
Q Consensus 255 q~~Eee~~~~d~E~Ek----Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK---~eL~~kL~~AE~~~~~lsn-v~e~~~Va~a~ 326 (520)
..-=.+ ....+.. +....+..-.++.+||+.-+++..|. .++..+|.+. +..++. ++-+--+.++.
T Consensus 421 R~pL~~---e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e---~e~~~k~~~Rs~Yt~RIl 494 (594)
T PF05667_consen 421 RAPLIE---EYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE---LEKLPKDVNRSAYTRRIL 494 (594)
T ss_pred HhHHHH---HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCCCCHHHHHHHHH
Confidence 221111 1111111 11122334467777777777777664 4455555543 322222 22345666777
Q ss_pred HHHHhhhhhcHHHHHHHH---HHhh
Q 046111 327 EEVNNLRHANDDLLKQVE---GLQM 348 (520)
Q Consensus 327 eE~~~LR~~NEdL~kqVE---qLq~ 348 (520)
+=+.+.|.-++|..|-+. +||+
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQk 519 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQK 519 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777665 4554
No 83
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.09 E-value=7.1 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=11.4
Q ss_pred cccchhhHHHHHHHHHHHH
Q 046111 349 NRFGEVEELVYLRWVNACL 367 (520)
Q Consensus 349 dR~seVEELVYLRWVNACL 367 (520)
.|-.++.+=+|.--+...-
T Consensus 361 ~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 361 NRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666667776666443
No 84
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.07 E-value=15 Score=42.69 Aligned_cols=188 Identities=22% Similarity=0.273 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHH----HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR-NKIKE----LQRQIQLDANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar-~Kir~----Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
.+|++.|...-..-++|-+.|++-++.-..++..||.+. ..+.+ =+.++........+.+..|..++.+|+..
T Consensus 100 a~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~-- 177 (739)
T PF07111_consen 100 AEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKS-- 177 (739)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445555555555556666777776666666666555443 11111 12233333334444444444444444332
Q ss_pred HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHh--------
Q 046111 260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNN-------- 331 (520)
Q Consensus 260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~-------- 331 (520)
+ +.||.............|.|...|-..|.-++..+.+. .-.|...+.-+-.
T Consensus 178 ------------L---~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q-----~tlv~~LR~YvGeq~p~~~~~ 237 (739)
T PF07111_consen 178 ------------L---ESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ-----VTLVEQLRKYVGEQVPPEVHS 237 (739)
T ss_pred ------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhhhCCccccc
Confidence 2 33333333333333344444444444444444332111 0011111111100
Q ss_pred --hhhhcHHHHHHHHHHhhcccc--hhhHHHHHHHHH----HHHHHHHhhcCCCCCCccccccccCCCcchHHHHHHHH
Q 046111 332 --LRHANDDLLKQVEGLQMNRFG--EVEELVYLRWVN----ACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLM 402 (520)
Q Consensus 332 --LR~~NEdL~kqVEqLq~dR~s--eVEELVYLRWVN----ACLR~ELrn~~~p~gk~sA~DLsk~lSpkSqekAKqLm 402 (520)
--...+.|..-|..|+.||.+ -.-||.--|-=+ =||..|=-....|+ +.+|-|.+..|+++|+
T Consensus 238 ~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp--------~d~Le~e~~~K~q~LL 308 (739)
T PF07111_consen 238 QAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQP--------SDPLEPEFSRKCQQLL 308 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------CCCCCchhHHHHHHHH
Confidence 012235588888888888864 345666655322 26766554444432 4577888888888876
No 85
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=16 Score=42.35 Aligned_cols=173 Identities=21% Similarity=0.169 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhhhHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLK---EQESDIVELQRQLKI---KTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LK---EQEa~v~ELe~~L~~---k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
..|++.|+..+..+.+.|..=-.+.-.=..++ +.....-+|+...+. --+|+..-.-.++-+|++|.+|-.++.
T Consensus 399 ~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ 478 (698)
T KOG0978|consen 399 RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELR 478 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544322111111112 334444444444443 346666667778889999999887775
Q ss_pred h----HHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhHHHHH----HhhhhHHHHHHHhhHHhHH
Q 046111 211 Q----SSYVKKELEVARNKIKELQRQIQLDANQ---TKGQLLLLKQQVSGLQAKEEE----AIKKDVELEKKLKSVKDLE 279 (520)
Q Consensus 211 e----~~~v~~ELe~ar~Kir~Lqkk~~~~a~q---~K~qi~~Lkq~V~~Lq~~Eee----~~~~d~E~EkKl~~l~~LE 279 (520)
+ +.++..+...+..+++.|....+....+ .+.+..++...+..|+.++.- ...--.++....+.+..+=
T Consensus 479 ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 479 EKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 4 5678888888888888888877655443 355666666666666666521 1222334444444555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 280 VEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 280 ~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
..+.++.+....||.+......+|...+-+
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~ 588 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQ 588 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665555443
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.80 E-value=17 Score=42.57 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=56.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHH
Q 046111 212 SSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKE 291 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~ 291 (520)
+..+..+|.+.....-.||.-+....-.-...-..|-++-..+..-+++...-..|+...-..+..-+.+|.-|++....
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~ 403 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIEN 403 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554443333332222223333333333344445555566666666666777777777777777
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q 046111 292 LQIEKRELLVKLDAAESKIAS 312 (520)
Q Consensus 292 LQ~EK~eL~~kL~~AE~~~~~ 312 (520)
|+...++=..+|+.+..++.+
T Consensus 404 Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 404 LEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777776654
No 87
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.55 E-value=2.7 Score=48.89 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
......++.++.+||+=|.-|+.|+.+..+ .++..+.|+.+|-|-+......+|.=..+++++=..
T Consensus 419 ~~~~~~~n~El~sLqSlN~~Lq~ql~es~k---~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~ 484 (861)
T PF15254_consen 419 TSGSQDCNLELFSLQSLNMSLQNQLQESLK---SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE 484 (861)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456889999999999999999988765 456778888888888888888887666665554333
No 88
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.43 E-value=17 Score=41.36 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=37.4
Q ss_pred hHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 255 QAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 255 q~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+..+......-.+++.++..+...+.+..+|.|.-.-.+.--..|..|++.+....
T Consensus 351 ~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 351 QARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334446666666777788888888888887777788888888776543
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.35 E-value=16 Score=40.76 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.+..|++++......|.. .++...++.+..+..++..+-.+.+--..|+..+.....++.....+++++...|+..+.
T Consensus 257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333 355667788889999999998888888899999999999999999999999999998888
Q ss_pred hhhHH
Q 046111 253 GLQAK 257 (520)
Q Consensus 253 ~Lq~~ 257 (520)
.++..
T Consensus 335 ~l~~s 339 (569)
T PRK04778 335 RVKQS 339 (569)
T ss_pred HHHHc
Confidence 88765
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=11 Score=44.44 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 046111 267 ELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV 301 (520)
Q Consensus 267 E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~ 301 (520)
|++.|++.+.-+-+.+.|||....-+|..+++|-.
T Consensus 557 E~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 557 ETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777777766666644
No 91
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.20 E-value=21 Score=41.58 Aligned_cols=166 Identities=26% Similarity=0.340 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhcchhhhhH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 046111 139 ELERLRSLVLELQEREVKLEGEL----LEYYGLKEQESD-----------IVELQRQLKIKTVEIDMLNITINSLQAERK 203 (520)
Q Consensus 139 EI~~Lr~lVeeLqERE~~LE~eL----LEy~~LKEQEa~-----------v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~ 203 (520)
+-..+....++|+.+|..|-.-| -+...|+.|-+. |.+|.++|...+.-=..|......|.-||.
T Consensus 423 ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk 502 (786)
T PF05483_consen 423 EKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKK 502 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888887765432 133334333332 334455554433333345556666677777
Q ss_pred HHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHhh-hhHHHHHHhhhhHHH
Q 046111 204 KLQEQIAQSS----YVKKELEVARNKIKELQRQIQ----------LDANQTKGQLLLLKQQVSG-LQAKEEEAIKKDVEL 268 (520)
Q Consensus 204 RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~----------~~a~q~K~qi~~Lkq~V~~-Lq~~Eee~~~~d~E~ 268 (520)
.++-+..... ++.+.+...+.+--.+-++|. -+.+..+.++.--.+.|.. |...++.+.....++
T Consensus 503 ~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~ 582 (786)
T PF05483_consen 503 QLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEI 582 (786)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHH
Confidence 6665444332 233333333322222222222 2233333333333333433 455556666667778
Q ss_pred HHHHhhHHhHHHHHHHHHH-------HhHHHHHHHHHHHHhHH
Q 046111 269 EKKLKSVKDLEVEVVELKR-------KNKELQIEKRELLVKLD 304 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr-------~Nk~LQ~EK~eL~~kL~ 304 (520)
.++.+.++-||.++.-||+ ...+||.+|--|-.+..
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888876 44678888888866654
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=16 Score=44.06 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----H
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ----S 212 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e----~ 212 (520)
.++|......++.-++.=..||.-.-++.. +++..+.+|++.|.....+++......+.=+-+-++|+-++.+ +
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~--~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~ 831 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKA--NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEI 831 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555566666666655 4444555565555554444443333332222222222222211 1
Q ss_pred HhHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111 213 SYVKKELEVA-------RNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL 285 (520)
Q Consensus 213 ~~v~~ELe~a-------r~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL 285 (520)
.....+|+.. +.++-.|..++.......++-...|+.+=..+.....++...-...++.++...+++.++.+|
T Consensus 832 ~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkl 911 (1174)
T KOG0933|consen 832 SSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKL 911 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHH
Confidence 1112222222 222333333332222222222222222222222222333344445566666677777777777
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHhhcC
Q 046111 286 KRKNKELQIEKRELLVKLDAAESKIASLS 314 (520)
Q Consensus 286 Rr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls 314 (520)
-.-...++.++.+...+++.-..+..-++
T Consensus 912 e~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 912 EHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 77778888888888888887776655444
No 93
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.04 E-value=23 Score=41.62 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 143 LRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL-KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L-~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
|+..++.+.++...|+..+-.|-.++-+-..+..++.+. ......++.+...+..++...++|.+...+....
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~ 303 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776666655555333333322222222 2333334444444444444444444433333333
No 94
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.00 E-value=12 Score=39.60 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------hHHHHHHHHHHHHHHHHHHHH-
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS------------------YVKKELEVARNKIKELQRQIQ- 234 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~------------------~v~~ELe~ar~Kir~Lqkk~~- 234 (520)
+.=|-++|.--..|-|.|...++.|+.....|.....+.. .+..-|..+|..++-|+..+.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555556666666666666666555554433322 233444555666655555433
Q ss_pred --HHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 046111 235 --LDANQTKGQLLLLKQQVSGLQAKEEEA 261 (520)
Q Consensus 235 --~~a~q~K~qi~~Lkq~V~~Lq~~Eee~ 261 (520)
.....+++++-+|+++++..+..-..+
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~ 119 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGI 119 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccc
Confidence 333445666777777766665555333
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.84 E-value=19 Score=40.21 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhcHHHHHHHHHHh-----hcccchhhHHHHHHHHHHHHHHHHhhcC
Q 046111 321 KVAKAREEVNNLRHANDDLLKQVEGLQ-----MNRFGEVEELVYLRWVNACLRYELRNYQ 375 (520)
Q Consensus 321 ~Va~a~eE~~~LR~~NEdL~kqVEqLq-----~dR~seVEELVYLRWVNACLR~ELrn~~ 375 (520)
-+..+.+.++.|...-.||...+..|. .+||-..-+-|--..-.|=.-| |+|.
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF--~~~~ 534 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF--REYD 534 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--HhCC
Confidence 345566777777777777777666554 6777555555555555555555 5554
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.81 E-value=18 Score=39.79 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=15.7
Q ss_pred HHhhHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111 271 KLKSVKDLEVEVVELKRKNKELQIEKRELL 300 (520)
Q Consensus 271 Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~ 300 (520)
..+.+..|.....+|...-..+.-|+.+|.
T Consensus 159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 159 RAERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=18 Score=41.14 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEID-MLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~-~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
.-+++.+|+.+=...- -...+|+.|++.|..|.+++.+..+.-.-++-.|.+.+.||.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~ 273 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQD 273 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Confidence 5555555554433332 255666777777777777766555555555555555554443
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=15 Score=43.26 Aligned_cols=163 Identities=28% Similarity=0.310 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----Hh--hhcchhhhhH-HHHHHHHHhhhhhHHHH-----HHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGEL----LE--YYGLKEQESD-IVELQRQLKIKTVEIDM-----LNITINSLQAERKK 204 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eL----LE--y~~LKEQEa~-v~ELe~~L~~k~~Ei~~-----L~~kI~sLEsEn~R 204 (520)
..|+++=|..+++=|.||..=..+. -+ -...+|||-- -.|||++|.- .-||++ -++.|+..|+-.+-
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLer-QReiE~qrEEerkkeie~rEaar~E 404 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLER-QREIERQREEERKKEIERREAAREE 404 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888887776665322211 11 2234444432 3455555542 222222 22233333322222
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhh-----------------
Q 046111 205 LQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKK----------------- 264 (520)
Q Consensus 205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~----------------- 264 (520)
|+. ..+|+.-|+++.+|+.+..++.+.. +++...|.+....|+.+-.+...+
T Consensus 405 lEk--------qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 405 LEK--------QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHH--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 222 2334555577777777776665554 334444444454444443332222
Q ss_pred -hHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 265 -DVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 265 -d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
+--.+..+..+..|-..+.|+...+-.|--|+..|--+|-..++
T Consensus 477 ~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 11122334445556666666777777777778888777776554
No 99
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.62 E-value=11 Score=42.81 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 324 KAREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 324 ~a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
..+.+++..+..=+.|....++.+..
T Consensus 380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 380 ALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554443
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.56 E-value=18 Score=42.24 Aligned_cols=130 Identities=26% Similarity=0.260 Sum_probs=78.8
Q ss_pred hhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 163 EYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 163 Ey~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
|-+.|+|.-+.=..|.+++..-..|++-++..+...++||.||.....++....+.++.-|.++|.=- +..|.
T Consensus 18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~-------ke~K~ 90 (717)
T PF09730_consen 18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI-------KEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33444444444444555555556677777888888888888888888887777777766655543322 22222
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 243 QLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 243 qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
.=.-|=+-.+.|+...+. ++|-+..++.=-+|++-|+--+++|++|..-|--.|+.|
T Consensus 91 rE~rll~dyselEeENis-------lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 91 REARLLQDYSELEEENIS-------LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHhhhhHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233333333322 555556666666777888888888888888776666644
No 101
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.51 E-value=16 Score=39.39 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhh
Q 046111 289 NKELQIEKRELLVKLDAAESKIAS 312 (520)
Q Consensus 289 Nk~LQ~EK~eL~~kL~~AE~~~~~ 312 (520)
..+++.+...|.-.+..++.++..
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444445555544443
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=1.5 Score=49.61 Aligned_cols=73 Identities=14% Similarity=0.360 Sum_probs=50.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 181 L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
+.....++..|..+++.|+.||.-|+..+.++. .+++..++++..+++++.......+ ++.++..++..|+.+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~r-ei~~~~~~I~~L~~~ 489 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKDR-EIRARDRRIERLEKE 489 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHH
Confidence 345566788889999999999999888877765 6677777788777777775544443 344555555554443
No 103
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=26 Score=40.74 Aligned_cols=189 Identities=25% Similarity=0.226 Sum_probs=100.2
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHhhhhhHHHHHHHH----HHHHHH
Q 046111 126 NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLKIKTVEIDMLNIT----INSLQA 200 (520)
Q Consensus 126 ~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k----I~sLEs 200 (520)
.+.|+.+.+-..-....|+.+-..+..+|..|+-++++-- .+++-...+-+|-+.+..+.+|.+-|..+ ++.++-
T Consensus 93 ~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 93 ARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444455566777777888889999999988877 67766666777777777666666555443 444554
Q ss_pred HHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH--
Q 046111 201 ERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQL------DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL-- 268 (520)
Q Consensus 201 En~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~------~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~-- 268 (520)
+-.-+...+... ....++|..-..++....+++.. ...+.++|+.-.-++++.....+.--....+.+
T Consensus 173 e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqe 252 (716)
T KOG4593|consen 173 EVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQE 252 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444333333322 22233333333333333333331 223334444444445444422222111111111
Q ss_pred -HHHHhhHHhHHHHHH---HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcC
Q 046111 269 -EKKLKSVKDLEVEVV---ELKRKNKELQIEKRELLVKLDAAESKIASLS 314 (520)
Q Consensus 269 -EkKl~~l~~LE~Ev~---ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls 314 (520)
+.--.++..+-.|+. +.++++.-||.|+..|-.||--++--.+.+-
T Consensus 253 l~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~ 302 (716)
T KOG4593|consen 253 LEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLL 302 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111222223444 6677888888888888888777665444333
No 104
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.43 E-value=12 Score=36.84 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
+-.+...|..+.+++..|+.++.+...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666665555544
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.36 E-value=2.6 Score=43.85 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
|..+-.+.-+....++.+..++...+++.+.++
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555555555554443
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.36 E-value=42 Score=42.95 Aligned_cols=27 Identities=26% Similarity=0.039 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHH
Q 046111 339 LLKQVEGLQMNRFGEVEELVYLRWVNA 365 (520)
Q Consensus 339 L~kqVEqLq~dR~seVEELVYLRWVNA 365 (520)
...-+||+.+.|..+-|+++-.+-.++
T Consensus 1481 ~~~~le~~k~e~~~e~e~~~~~~~~~~ 1507 (1822)
T KOG4674|consen 1481 KSENLEGTKKELESEKEELKQRLTELA 1507 (1822)
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456778888888888888887665544
No 107
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.10 E-value=7 Score=41.96 Aligned_cols=117 Identities=21% Similarity=0.146 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKEL 219 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~EL 219 (520)
=+.||..-+.++||-...+.=-+----|+.|-..+++ -+.-...++..|.-.|..+.+||.+|+.++.++..-..|-
T Consensus 84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~---vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ek 160 (401)
T PF06785_consen 84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE---VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEK 160 (401)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh
Confidence 3567777777777765443222222334444443333 2233456778899999999999999999999888776544
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111 220 E-VARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 220 e-~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
+ .+..=+|+|..-+...+.=+-+.-..+-+|-+.|..+..
T Consensus 161 eeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~ 201 (401)
T PF06785_consen 161 EEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQA 201 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 3 444555565555544444444444444444444444443
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.07 E-value=14 Score=36.81 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 046111 191 LNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
|...|+.|+.-|++|..+.+.+
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL 27 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKL 27 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3344555666666655554433
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.01 E-value=9.6 Score=44.15 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 170 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
|..+..+++.++..-..+.+.-..++..|+.+.+.|++.+.. +.+.++.|+.+-+.|.+|++...+..
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK---LAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888888877754443 33568888888888888887766554
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.95 E-value=11 Score=35.56 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.+.++++++..-..+++.+...+..++.+...++....... +++...+.++..+...++......
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~------------ 146 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEI------------ 146 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45555555555556666666666666666665555554444 333333333333322222111111
Q ss_pred hhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 253 GLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 253 ~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
.++. +.++++..++.+++....+++.....+..++.
T Consensus 147 -------------~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 147 -------------RELQ---KELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred -------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 33455666666666666666666666655444
No 111
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=29 Score=41.13 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhh--hhhc
Q 046111 259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNL--RHAN 336 (520)
Q Consensus 259 ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~L--R~~N 336 (520)
.+.-+...+++.++..+......+.+|.-.++-+-.++.....||..-+.++...+|. +++.-|....| -..+
T Consensus 813 ~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nl-----i~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 813 SELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNL-----IKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhH-----HHHHhhhhhhHHHhhcc
Confidence 3334445567777777888888888888888888888888888888777777655554 22222333322 2245
Q ss_pred HHHHHHHHHHhh
Q 046111 337 DDLLKQVEGLQM 348 (520)
Q Consensus 337 EdL~kqVEqLq~ 348 (520)
+-|+|.|++-.+
T Consensus 888 e~l~ka~~~~k~ 899 (970)
T KOG0946|consen 888 ETLSKALKTVKS 899 (970)
T ss_pred hHHHHHHHHhhc
Confidence 667888877666
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.48 E-value=15 Score=36.08 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhcHHHHH
Q 046111 322 VAKAREEVNNLRHANDDLLK 341 (520)
Q Consensus 322 Va~a~eE~~~LR~~NEdL~k 341 (520)
+..+..++..|......|..
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444433
No 113
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=91.39 E-value=27 Score=38.84 Aligned_cols=77 Identities=29% Similarity=0.308 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHH
Q 046111 279 EVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEEL 357 (520)
Q Consensus 279 E~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEEL 357 (520)
|.|..=||.-|+.||.+.++-+.-..+|=--+-+|... ++-+.-|++-+....+.|+.+-+|++.|+..+-.+|.=|
T Consensus 402 EkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~ea--eea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 402 EKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREA--EEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677799999999765433333332222222222 122233566677778889999999999999987766433
No 114
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=44 Score=41.09 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhcccc
Q 046111 325 AREEVNNLRHANDDLLKQVEGLQMNRFG 352 (520)
Q Consensus 325 a~eE~~~LR~~NEdL~kqVEqLq~dR~s 352 (520)
++.|..-|-...+.+.+.||.|+..=-+
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888889999988765443
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.28 E-value=11 Score=34.25 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
|..|..++.+++.....|+.+.......|+.++.....--..- ..-+..++.-+.-|..-|.=|-.|||-|
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~l-e~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQL-EKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555555554321111111 1112233444555556666666776654
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=34 Score=40.63 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=25.5
Q ss_pred hhcc-hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 164 YYGL-KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 164 y~~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
|||| ++|...+..|+.+.+.-+.|.+.|+.++..+.++...|.+++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~ 708 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL 708 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544 555555555555555555566666555555555555554444
No 117
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.09 E-value=9.8 Score=42.80 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhhhHH----HH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGL--KEQESDI----VE--LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~L--KEQEa~v----~E--Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
++.-+..|-.|+ -|.....+||..|.- .|.+++. +- =+..-.....-.+.|..++..+++||.+|+..+..
T Consensus 106 v~~~~d~vvql~-hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~l 184 (596)
T KOG4360|consen 106 VDAPWDRVVQLG-HELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKAML 184 (596)
T ss_pred hcchHHHHHHhh-hhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 444444443332 356667778887753 3332211 00 00001111234677888888888888888876654
Q ss_pred ---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 212 ---------------SSYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 212 ---------------~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
|..+++||..+..+++-+++.|+....++
T Consensus 185 lk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el 228 (596)
T KOG4360|consen 185 LKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKEL 228 (596)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888877666554443
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.02 E-value=23 Score=37.24 Aligned_cols=55 Identities=33% Similarity=0.384 Sum_probs=30.8
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCc
Q 046111 263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMT 317 (520)
Q Consensus 263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~ 317 (520)
.-+.+++.+.+.+.+++.++.+++........++.++-..+..|+.........|
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344455555555666666666666666666666666666666655444444444
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.99 E-value=16 Score=42.79 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=65.5
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 130 ETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 130 ~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
+.+.++-..++..+++.+..|++|=.-+|-+|--- ++ -..++++|..|.-...+.-+-..+-...++-.++|..++
T Consensus 97 E~~Lankda~lrq~eekn~slqerLelaE~~l~qs--~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 97 ENELANKDADLRQNEEKNRSLQERLELAEPKLQQS--LR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH--Hh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34456667888899999999999876666666543 33 445788888888888888888888888887777777776
Q ss_pred HhHHhHHHHHHHHHHHHH
Q 046111 210 AQSSYVKKELEVARNKIK 227 (520)
Q Consensus 210 ~e~~~v~~ELe~ar~Kir 227 (520)
.+.. .||..|+-+.+
T Consensus 173 qe~n---aeL~rarqree 187 (916)
T KOG0249|consen 173 EELN---AELQRARQREK 187 (916)
T ss_pred HHHH---HHHHHHHHHHH
Confidence 6543 46666664443
No 120
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.83 E-value=17 Score=41.90 Aligned_cols=112 Identities=28% Similarity=0.316 Sum_probs=70.8
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046111 168 KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLL 247 (520)
Q Consensus 168 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~L 247 (520)
.+.+..+..+..+|......+.........++.++..|++.+. .+..++.+++.|+......-++ |..|
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~~~~----i~~l 246 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-------NYADLRRNIKPLEGLESTIKKK----IQAL 246 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhhHHHhhhhhhhhhhHHHHH----HHHH
Confidence 3445567777777877788888888888888888888888776 4445555555555544433333 7777
Q ss_pred HHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111 248 KQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAE 307 (520)
Q Consensus 248 kq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE 307 (520)
++++..|+... ..|...+..+.+.+.+.....+.+...|..+.
T Consensus 247 ~~~l~~l~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 289 (670)
T KOG0239|consen 247 QQELEELKAEL-----------------KELNDQVSLLTREVQEALKESNTLQSDLESLE 289 (670)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777665553 34555555555555555555566555555443
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.77 E-value=18 Score=35.61 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 230 QRQIQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 230 qkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
+..+-....+..+++..|+.+.-..+..+
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544444444
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.69 E-value=1.7 Score=41.76 Aligned_cols=42 Identities=36% Similarity=0.415 Sum_probs=29.4
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
+..--..+++|+.++.|+.+.|..|+.|.--|-..+..+|.+
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567888888888888888888887776666655443
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=16 Score=41.75 Aligned_cols=174 Identities=26% Similarity=0.336 Sum_probs=106.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
++.+.+=.+||.-+++++.||.+| |-+|-.|.|-...+...=.-|.-..+|.+-|+-.|..|+++..=|-.++.+..
T Consensus 145 ~~~E~qR~rlr~elKe~KfRE~Rl---lseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 145 AAVEDQRRRLRDELKEYKFREARL---LSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999998 66788888877777766667778888899999999999999988888877766
Q ss_pred hHH----HHHHHHHHHH---HHHHHHHHHHHHhh--HHHHHHHHHHHhhhhH-HHHHHhh--hhHH------------HH
Q 046111 214 YVK----KELEVARNKI---KELQRQIQLDANQT--KGQLLLLKQQVSGLQA-KEEEAIK--KDVE------------LE 269 (520)
Q Consensus 214 ~v~----~ELe~ar~Ki---r~Lqkk~~~~a~q~--K~qi~~Lkq~V~~Lq~-~Eee~~~--~d~E------------~E 269 (520)
.++ ++||.|=.-+ |+-+.-++++..|. ...+-.|-...-+|.. ..+..+. +|++ +-
T Consensus 222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~ 301 (772)
T KOG0999|consen 222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLF 301 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhh
Confidence 544 3444442111 12222233333332 2333333333334432 1111111 1222 00
Q ss_pred HHHhh------HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 270 KKLKS------VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 270 kKl~~------l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
.-++- ..-...|+.-|+......+-+|-+|+--|..++.++
T Consensus 302 tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~l 348 (772)
T KOG0999|consen 302 TELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQL 348 (772)
T ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 11100 123455666677777777888888888888887654
No 124
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=90.62 E-value=7.6 Score=38.59 Aligned_cols=93 Identities=31% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.+.+.-++|..--.||..|+ ..|+||+++=.++.-+.=-|.-.|.|.|.|-+.-|.-...| +-+.++.|+
T Consensus 42 lm~evNrrlQ~hl~EIR~LK-------e~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt---a~vmr~eV~ 111 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLK-------EVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT---ASVMRQEVA 111 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH---HHHHHHHHH
Confidence 34444444444445555444 44555555555555555566678888888888877777666 445566666
Q ss_pred hhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111 253 GLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL 292 (520)
Q Consensus 253 ~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L 292 (520)
..+. .|++||..-.+|-+-|.+|
T Consensus 112 ~Y~~-----------------KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 112 QYQQ-----------------KLKELEDKQEELIRENLEL 134 (195)
T ss_pred HHHH-----------------HHHHHHHHHHHHHHhHHHH
Confidence 5433 3577887777777777665
No 125
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.56 E-value=38 Score=38.99 Aligned_cols=101 Identities=25% Similarity=0.222 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc----c------hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------
Q 046111 142 RLRSLVLELQEREVKLEGELLEYYG----L------KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL------ 205 (520)
Q Consensus 142 ~Lr~lVeeLqERE~~LE~eLLEy~~----L------KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL------ 205 (520)
-++..|+-|.+|=..++.++.+.-. . +++--.-..|.++....+.++..+..+|.+|+.-+..-
T Consensus 142 ~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~ 221 (629)
T KOG0963|consen 142 TQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD 221 (629)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3344566666666666555554443 2 22222334556666666778888899999887654332
Q ss_pred ---------HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 206 ---------QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 206 ---------~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
-...+++..+..+|+.|..+|..|++.+.....|...
T Consensus 222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2346788899999999999999999999988877753
No 126
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.48 E-value=26 Score=37.02 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYY 165 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~ 165 (520)
+..|...+.+++.+=...+.+|-.|.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666556666555554
No 127
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.48 E-value=1.1 Score=38.81 Aligned_cols=74 Identities=30% Similarity=0.394 Sum_probs=58.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIK------------TVEIDMLNITINSLQAE 201 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k------------~~Ei~~L~~kI~sLEsE 201 (520)
.....||..|+..+..|+..-..+.++=|+-+.++| +..||.+|... ..+|+.|..++..|+.+
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e----L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE----LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999888888544 66677766533 45667788888888888
Q ss_pred HHHHHHHHHh
Q 046111 202 RKKLQEQIAQ 211 (520)
Q Consensus 202 n~RL~~qv~e 211 (520)
|..|+.++++
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 8888887754
No 128
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.44 E-value=42 Score=39.31 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 202 RKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 202 n~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
..++...+.++..+..||...|.++..++.+...+..+-+..+-.|++++..++...
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~ 414 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSS 414 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555556666666666666666666666655566666777777777765543
No 129
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=4.8 Score=45.86 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=61.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 046111 132 EMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDM---LNITINSLQAERKKLQEQ 208 (520)
Q Consensus 132 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~---L~~kI~sLEsEn~RL~~q 208 (520)
+-..+..+|..|.++|+.|++.=..|+.++.++. ..+..|+++|..-..++.. -+++|..++.++.+|+-.
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELK------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999888888877665 5677788877755554442 455666777777777666
Q ss_pred HHhHHhHHHHHHHHHHHHHH
Q 046111 209 IAQSSYVKKELEVARNKIKE 228 (520)
Q Consensus 209 v~e~~~v~~ELe~ar~Kir~ 228 (520)
+.+-...+++|+.-=.+++.
T Consensus 490 L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 490 LEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555544444433
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.25 E-value=38 Score=38.60 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 147 VLELQEREVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 147 VeeLqERE~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
.+.|+++-.+|+.-.-.|-.-=.| ...-+.+++-|+-.+.||..-...|+.|++++..|+.+|.
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444332111 2233456667777777777777777788888877777664
No 131
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.11 E-value=5.4 Score=38.76 Aligned_cols=67 Identities=30% Similarity=0.423 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
.+|+.++.+|...+.+|+.+..+|..+.+.++.+....-.. ...+-.+|+..|++.|..|..+++++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~----~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE----EEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888888888888888888887665332221 22333789999999999999999864
No 132
>PRK12704 phosphodiesterase; Provisional
Probab=90.11 E-value=36 Score=38.07 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 046111 222 ARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV 301 (520)
Q Consensus 222 ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~ 301 (520)
++.++...+.+++.+.++-+.++ +++=..|..+++..-++...++++.+.+. ..-.+|.+..++|+..+.++..
T Consensus 62 aeeE~~~~R~Ele~e~~~~e~~L---~qrE~rL~~Ree~Le~r~e~Lekke~eL~---~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 62 AKEEIHKLRNEFEKELRERRNEL---QKLEKRLLQKEENLDRKLELLEKREEELE---KKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333332 22222234444443344444444443322 2223333444444444444444
Q ss_pred hHHHHHHHHhhcCCCchhH
Q 046111 302 KLDAAESKIASLSNMTESE 320 (520)
Q Consensus 302 kL~~AE~~~~~lsnv~e~~ 320 (520)
........+..++++|.++
T Consensus 136 ~~~~~~~~l~~~a~lt~~e 154 (520)
T PRK12704 136 LIEEQLQELERISGLTAEE 154 (520)
T ss_pred HHHHHHHHHHHHhCCCHHH
Confidence 4555555566678888655
No 133
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.07 E-value=46 Score=39.20 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 046111 339 LLKQVEGLQ 347 (520)
Q Consensus 339 L~kqVEqLq 347 (520)
+.++++.+.
T Consensus 731 ~~~~~~~~~ 739 (908)
T COG0419 731 LKKELEKLE 739 (908)
T ss_pred HHHHHHHHH
Confidence 444444443
No 134
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.86 E-value=29 Score=41.96 Aligned_cols=150 Identities=24% Similarity=0.304 Sum_probs=82.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
.-|+..||++|++-|...+++.=-.-. +..+.+.+.+...+...|+.+..+|..++.+-..|++...-.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyis-----------ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~ 474 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYIS-----------EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ 474 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEec-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456789999999999888776432211 222334555666667777777777777777777777655433
Q ss_pred H----hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHH
Q 046111 213 S----YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRK 288 (520)
Q Consensus 213 ~----~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~ 288 (520)
. .+.++++..+.++..--..+.. .+.++ ++-...|..++.- .......|.+ +..-+.+||+.
T Consensus 475 ~~~~~~l~~~~~~~k~~L~~~~~el~~----~~ee~---~~~~~~l~~~e~i-i~~~~~se~~------l~~~a~~l~~~ 540 (1041)
T KOG0243|consen 475 LEIKELLKEEKEKLKSKLQNKNKELES----LKEEL---QQAKATLKEEEEI-ISQQEKSEEK------LVDRATKLRRS 540 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHH
Confidence 3 3333333333333222222211 11111 1222222223222 2222223323 23337889999
Q ss_pred hHHHHHHHHHHHHhHHHHH
Q 046111 289 NKELQIEKRELLVKLDAAE 307 (520)
Q Consensus 289 Nk~LQ~EK~eL~~kL~~AE 307 (520)
+..-|.....|..||+.-.
T Consensus 541 ~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 541 LEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999999999988888654
No 135
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.42 E-value=26 Score=35.40 Aligned_cols=73 Identities=25% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhhh-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGLK-EQES-DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LK-EQEa-~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
+..--.-|+.|+..=..|+.++-.+.+=+ .+.+ .-.-.+.+|..-...|+.+......|+.+...+..++.++
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 44445567777888888888877777652 2221 2333455555555555555555555555555555444443
No 136
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.40 E-value=59 Score=39.55 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=50.3
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 046111 129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITIN 196 (520)
Q Consensus 129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~ 196 (520)
|.+..++.-.+|..|.....+|+.-...|+.==-+..+|+-|-.....|+++|..+.-+..++...+.
T Consensus 665 s~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~ 732 (1174)
T KOG0933|consen 665 SRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLE 732 (1174)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666777888888888887777766655555666777777888888999888888888777665
No 137
>PF15294 Leu_zip: Leucine zipper
Probab=89.30 E-value=13 Score=38.90 Aligned_cols=133 Identities=29% Similarity=0.346 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh----HHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhhhHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSY----VKKELEVARNKIKELQRQIQLDANQ------TKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~----v~~ELe~ar~Kir~Lqkk~~~~a~q------~K~qi~~Lkq~V~~Lq~~ 257 (520)
+..|++.|..|++||++|++.+..+.. +..|=......++.||. ++..... .-+++.-|..+|+.++..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 345899999999999999998875544 44455555566666666 3332222 225666777788777654
Q ss_pred HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhh
Q 046111 258 EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK----RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLR 333 (520)
Q Consensus 258 Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK----~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR 333 (520)
=+.. +..+-...+.|+..+.-.+-....+|.+- .+|..|+.. -+.+.|| -+|+.+-..++-.||
T Consensus 206 ~ek~------~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~NM--k~~ltkKn~QiKeLR 273 (278)
T PF15294_consen 206 LEKA------LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYRNM--KEILTKKNEQIKELR 273 (278)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHHHh--HHHHHhccHHHHHHH
Confidence 2221 22222345667777777666666666652 244444442 2235565 455655445555544
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.05 E-value=8.6 Score=38.13 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
+...+..|..|+.+|.+|..++.. +..+++.++.++..+++.+.
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~---~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIV---AQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333566677789999988665544 34444444444444444443
No 139
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.04 E-value=54 Score=38.57 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQER 153 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqER 153 (520)
...|++.+...|.+|.+.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~ 361 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNA 361 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777766543
No 140
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.79 E-value=0.59 Score=45.35 Aligned_cols=105 Identities=28% Similarity=0.335 Sum_probs=63.0
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHH
Q 046111 249 QQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREE 328 (520)
Q Consensus 249 q~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE 328 (520)
+-|.+||++=..-.++|.+++.++..-+.|+..-.. +....+--..-.+...||+..+.+...|+.| + +-.++.
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv--N---~lLReQ 89 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-RRSEEEHSPDLEEALIRLEEEQQRSEELAQV--N---ALLREQ 89 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-ccccccCcccHHHHHHHHHHHHHhHHHHHHH--H---HHHHHH
Confidence 346677777666666777777766332111111111 1111111122223666777666666555544 3 334788
Q ss_pred HHhhhhhcHHHHHHHHHHhhcccchhhHHHH
Q 046111 329 VNNLRHANDDLLKQVEGLQMNRFGEVEELVY 359 (520)
Q Consensus 329 ~~~LR~~NEdL~kqVEqLq~dR~seVEELVY 359 (520)
....+.+|+.|...+..|..++-.-.+||-.
T Consensus 90 LEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 90 LEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999887777764
No 141
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.61 E-value=22 Score=33.60 Aligned_cols=112 Identities=27% Similarity=0.297 Sum_probs=69.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN---QTKGQLLLLKQQV 251 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~---q~K~qi~~Lkq~V 251 (520)
...++.|+.-..+.+.|..+|.+|+++..-.+... ..+..+.+-+++.|.-|+.++...+. +-...+..|.
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~---e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~--- 79 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENK---ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR--- 79 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35677888889999999999999999988777543 34556666777777777666654332 2233333332
Q ss_pred hhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 252 SGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 252 ~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
..... -+.+++++-.+|.+||.-...+++....+..++..+
T Consensus 80 ----sEk~~---L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 80 ----SEKEN---LDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred ----HHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11111 222345555556666666666666666666654444
No 142
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.40 E-value=46 Score=37.03 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=22.1
Q ss_pred hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111 165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQA 200 (520)
Q Consensus 165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 200 (520)
..|+.+......|+..|.....+|..|...+....+
T Consensus 228 ~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 228 EELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666777777666666666666555444
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.36 E-value=35 Score=35.53 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=23.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 181 L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
|.....+|+.+..+|..++.++.+++.++. .+.++++..+..|+..+..+...++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik---~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIK---KLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433332 2344455555555555554444333
No 144
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.33 E-value=48 Score=37.09 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=8.5
Q ss_pred HHHHHhhcCCCchhH
Q 046111 306 AESKIASLSNMTESE 320 (520)
Q Consensus 306 AE~~~~~lsnv~e~~ 320 (520)
....+..++++|.++
T Consensus 134 ~~~~le~~a~lt~~e 148 (514)
T TIGR03319 134 QREELERISGLTQEE 148 (514)
T ss_pred HHHHHHHHhCCCHHH
Confidence 334455567777554
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.25 E-value=71 Score=39.03 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQE-QIAQSSYVKKELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~-qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a 237 (520)
..++..++......+..++.++..++......+. .+.++..-...+..|+..+..++..+....
T Consensus 308 ~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt 372 (1201)
T PF12128_consen 308 RDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLT 372 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777777777766654 455555555555555555555555444333
No 146
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.05 E-value=49 Score=36.87 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN 224 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~ 224 (520)
+..+++.|.....++..|+..+...+.=...|..--.....+..||..++.
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543333333333333444444444444443
No 147
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=88.04 E-value=8.3 Score=41.05 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 195 I~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
-..|+.+..++.+|+.++...+.++| ..|-+|+-...+.=|+.|+.|++.+..++..+
T Consensus 153 nerL~~e~~~~~~qlE~~v~~K~~~E------~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~ 210 (342)
T PF06632_consen 153 NERLESEANKLLKQLEKFVNAKEEHE------EDLYAKFVLVLNEKKAKIRELQRLLASAKEEE 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 33444444555555555555555444 36888999999999999999999988877544
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=61 Score=37.89 Aligned_cols=146 Identities=26% Similarity=0.278 Sum_probs=79.0
Q ss_pred HhhhcchhhhhH-HHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 162 LEYYGLKEQESD-IVELQRQLK---IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 162 LEy~~LKEQEa~-v~ELe~~L~---~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a 237 (520)
-.|-.|+||... +.+|..... .-..+-...+.++..|..+...|..++..+.....=+..--.++.+.-+.++...
T Consensus 461 sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 461 SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 345556666554 233333222 1123444566777777778888887777776665544433333333333333333
Q ss_pred HhhHHHHHHHHHHHhhhhHHHHHHhh-----------hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 238 NQTKGQLLLLKQQVSGLQAKEEEAIK-----------KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 238 ~q~K~qi~~Lkq~V~~Lq~~Eee~~~-----------~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
..-..++..+.+.+...+..=.++.. ....++.=-..+.+++.++.-++..+++||.|...|-+||...
T Consensus 541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444433333333222222 2222222223467778888888888999999999998888854
Q ss_pred H
Q 046111 307 E 307 (520)
Q Consensus 307 E 307 (520)
.
T Consensus 621 k 621 (698)
T KOG0978|consen 621 K 621 (698)
T ss_pred c
Confidence 3
No 149
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.87 E-value=53 Score=37.09 Aligned_cols=189 Identities=18% Similarity=0.248 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERK-------KLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL 245 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~-------RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~ 245 (520)
.+..|+.++..+..||..|...+..|..+-. .++.+.++--.+..||+....++..|.+-|..--..+.+-+.
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~ 410 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK 410 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence 3556777777888888888888888877643 466778888889999999999998888887654444444444
Q ss_pred HHHHHHhhhhHHHHHHhhh----------------------------------hHH----HHHHHhh----HHhHHHHHH
Q 046111 246 LLKQQVSGLQAKEEEAIKK----------------------------------DVE----LEKKLKS----VKDLEVEVV 283 (520)
Q Consensus 246 ~Lkq~V~~Lq~~Eee~~~~----------------------------------d~E----~EkKl~~----l~~LE~Ev~ 283 (520)
.|-..+-.+..--..+... -.| +.-.... -=.||.-+-
T Consensus 411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~ 490 (622)
T COG5185 411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIK 490 (622)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhh
Confidence 3333333322222111111 111 1111111 112666677
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHh---hcccchhhHHH--
Q 046111 284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ---MNRFGEVEELV-- 358 (520)
Q Consensus 284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq---~dR~seVEELV-- 358 (520)
++.-...+|+.+.+-+..+|..|-+.....- ..+.+|.++.|-+-|.|-+++-+|. +.-..+.|++|
T Consensus 491 ~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k--------e~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs 562 (622)
T COG5185 491 NLKHDINELTQILEKLELELSEANSKFELSK--------EENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQS 562 (622)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHH
Confidence 7777778888888888888887755431111 1233445555555556777776654 23334445443
Q ss_pred ----HHHHHHHHHHH
Q 046111 359 ----YLRWVNACLRY 369 (520)
Q Consensus 359 ----YLRWVNACLR~ 369 (520)
-=+-.|+|-||
T Consensus 563 ~~i~ld~~~~~~n~~ 577 (622)
T COG5185 563 TEIKLDELKVDLNRK 577 (622)
T ss_pred HHhhHHHHHHHHHHH
Confidence 44667888765
No 150
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.77 E-value=22 Score=32.65 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 046111 218 ELEVARNKIKELQRQIQLDANQTK 241 (520)
Q Consensus 218 ELe~ar~Kir~Lqkk~~~~a~q~K 241 (520)
++..+..+.+.|+++++......|
T Consensus 88 e~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 88 ELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444443333
No 151
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.52 E-value=65 Score=37.75 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=64.1
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH------HHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhc
Q 046111 263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQ------IEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHAN 336 (520)
Q Consensus 263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ------~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~N 336 (520)
++..+++.....-+.=|+++.+|+....+=| ..-.-.+-.|..++..+.-+-.+++.++ -..+...+..-..|
T Consensus 388 kks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev-~dLe~~l~~~~~~e 466 (786)
T PF05483_consen 388 KKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEV-HDLEIQLTTIKESE 466 (786)
T ss_pred HhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhh
Confidence 3444555444444455666888888776655 2223345667777777766655555443 45677888888888
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 046111 337 DDLLKQVEGLQMNRFGEVEELVYLRWVNACLRY 369 (520)
Q Consensus 337 EdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ 369 (520)
-..++||+.|+.+=-. |.|=|.--.=-|-.-
T Consensus 467 q~yskQVeeLKtELE~--EkLKN~ELt~~~nkL 497 (786)
T PF05483_consen 467 QHYSKQVEELKTELEQ--EKLKNTELTVNCNKL 497 (786)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 8999999999873211 245555443344333
No 152
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.51 E-value=51 Score=36.51 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhhcHHHHHHHH-HHhhcccchhhHHHHHHHH-HHHHHHHHhhcCCCC
Q 046111 324 KAREEVNNLRHANDDLLKQVE-GLQMNRFGEVEELVYLRWV-NACLRYELRNYQAPA 378 (520)
Q Consensus 324 ~a~eE~~~LR~~NEdL~kqVE-qLq~dR~seVEELVYLRWV-NACLR~ELrn~~~p~ 378 (520)
.+--|-+.|+--.|.|..++- .+..+|-+.+- ..|+.|+ +|-.|+.+--...|+
T Consensus 410 ~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~-~~~~~~~~d~~~r~~~~~~~~~~ 465 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLETQLKEEASNNRPSSIL-MKYSNSEDDAESRVPLLMKDSPH 465 (511)
T ss_pred HHHhhhhhccccHHHHHHHHHhhccCCCCchhh-HhhccCCCchhhhhhhhccCCCc
Confidence 334456666666666666665 44445554432 2566664 366777664444443
No 153
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.25 E-value=27 Score=33.02 Aligned_cols=155 Identities=22% Similarity=0.249 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH---------HHHHHHhhhhhHHHHHHHHHH----HHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIV---------ELQRQLKIKTVEIDMLNITIN----SLQAER 202 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~---------ELe~~L~~k~~Ei~~L~~kI~----sLEsEn 202 (520)
-..+|..+|--.-.|+-.-.+++.+|-..-.|-|--..|- .|-..+..++.|+-.|..++. .|.--.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777777778777788887777766666555443 344455556666666555543 233344
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhH--HHHHHHhhHHhHHH
Q 046111 203 KKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDV--ELEKKLKSVKDLEV 280 (520)
Q Consensus 203 ~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~--E~EkKl~~l~~LE~ 280 (520)
++|..-..++..+..+|......+. +++.+..+.+.+...++.+...|+.+..-.....- +..+....+.+|+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~----~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~ 159 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELA----KLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333 33344455566666666666666555432211111 24556666777777
Q ss_pred HHHHHHHHhHHHHH
Q 046111 281 EVVELKRKNKELQI 294 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~ 294 (520)
.|..|++....|+.
T Consensus 160 ~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 160 EIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 154
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=39 Score=38.63 Aligned_cols=143 Identities=21% Similarity=0.324 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH----HHhhhhHH
Q 046111 193 ITINSLQAERKKLQ-EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE----EAIKKDVE 267 (520)
Q Consensus 193 ~kI~sLEsEn~RL~-~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee----e~~~~d~E 267 (520)
.+|..|-....|=+ +...++..-.+|+...+.+|..||+ +.....+++.-||+..+.|.+... +....+..
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~----~l~eke~sl~dlkehassLas~glk~ds~Lk~leIa 388 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQA----ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIA 388 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 34444444333322 2233333344444444444444444 445556778888888888877653 23334555
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHH--HHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKE--LQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~--LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEq 345 (520)
+|.|-..|.+||...+--.....+ .--+-.++...|+-+-..+ .+...+|..++..| =.+++|||+
T Consensus 389 lEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y--------~de~~kaqaevdrl----Leilkeven 456 (654)
T KOG4809|consen 389 LEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYY--------RDECGKAQAEVDRL----LEILKEVEN 456 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHh
Confidence 666666666666543322211111 1123344444455443322 23333444555543 348999999
Q ss_pred Hhhccc
Q 046111 346 LQMNRF 351 (520)
Q Consensus 346 Lq~dR~ 351 (520)
+++|--
T Consensus 457 eKnDkd 462 (654)
T KOG4809|consen 457 EKNDKD 462 (654)
T ss_pred hhcccc
Confidence 988743
No 155
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.73 E-value=40 Score=41.05 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 193 ITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 193 ~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
..+..|-....||..++.++..-..++.....++.-|..+++
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~ 693 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLK 693 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445555555666666666666655566666666666666655
No 156
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=26 Score=39.30 Aligned_cols=110 Identities=26% Similarity=0.329 Sum_probs=78.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
-.+|..+|+....+++..+..|..+.+...+|+ ..+...+..++.+|.|..+|.++|=+.+-+ +..|+.+=-.
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik----qeilr~~G~~ 408 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIK----QEILRKRGYA 408 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCc
Confidence 357999999999999999999999999999999 777888888999999999999998765432 2233333334
Q ss_pred hhHHHHHHhhhhHHHHHHHhhH-HhHHHHHHHHHHHhHHHHHHHHH
Q 046111 254 LQAKEEEAIKKDVELEKKLKSV-KDLEVEVVELKRKNKELQIEKRE 298 (520)
Q Consensus 254 Lq~~Eee~~~~d~E~EkKl~~l-~~LE~Ev~ELRr~Nk~LQ~EK~e 298 (520)
|...|++ +..|++.| +.|..= .|+++....|...-+-
T Consensus 409 L~~~EE~-------Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 409 LTPDEEE-------LRAKLDTLLAQLNAP-NQLKARLDELYEILRM 446 (508)
T ss_pred CCccHHH-------HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHh
Confidence 5555544 55555543 223332 6777777776655443
No 157
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.31 E-value=21 Score=41.79 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhcchhhh---hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 151 QEREVKLEGELLEYYGLKEQE---SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 151 qERE~~LE~eLLEy~~LKEQE---a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
.+|-..++..|+---+ |-- -..-+||++|+.+.+.+.-+..+..+|+..-.-++.++....+ .+-|..+.
T Consensus 69 E~ritt~e~rflnaqr--e~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeve 141 (916)
T KOG0249|consen 69 EERITTLEKRFLNAQR--ESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVE 141 (916)
T ss_pred ccccchHHHHHHhccC--CCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhH
Confidence 3455556666654332 222 1367899999999999998888888888888877777777666 44344433
No 158
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.17 E-value=54 Score=35.41 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELL 162 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLL 162 (520)
+..++..|+..+..|+.+..+|+.++-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888887764
No 159
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=86.13 E-value=63 Score=36.17 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
..|..++..|...|.++..|-..|+.=|-
T Consensus 168 ~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 168 HTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56888889999999999999888877664
No 160
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.00 E-value=30 Score=32.37 Aligned_cols=37 Identities=35% Similarity=0.324 Sum_probs=23.7
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+|+-||.++.......+.....-++.-++.+..+-++
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv 117 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKV 117 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566787777777777666666666666655554443
No 161
>PLN02939 transferase, transferring glycosyl groups
Probab=85.73 E-value=73 Score=38.61 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----------hhHHHHHHHHHhhhhh--------HHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQ-----------ESDIVELQRQLKIKTV--------EIDMLNITINS 197 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----------Ea~v~ELe~~L~~k~~--------Ei~~L~~kI~s 197 (520)
..|+..||.-=-.|++--.-|..+|-+...--|. ++.+.+||..+.+... +++.+-.|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVEN 304 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Confidence 3444444444444444444444444444332222 3456666666554433 33556667777
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ---TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS 274 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q---~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~ 274 (520)
||.=..+.-.|+.....+..+-...+.|+..|..-+.. ++- .-.-+..++|+|..++.. ..+++.++..-+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 378 (977)
T PLN02939 305 LQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE-ANVSKFSSYKVELLQQKLKLLEER---LQASDHEIHSYI-- 378 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hhHhhhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH--
Confidence 77777777777777666666555555555555544431 111 123445667777665544 344666665443
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
+--..++.|++.+.+.|-.|..
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 379 -QLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhh
Confidence 4466778888888887766643
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.46 E-value=66 Score=35.84 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH---H-HHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIK---TVEIDMLNITINSLQAER---K-KLQEQI 209 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k---~~Ei~~L~~kI~sLEsEn---~-RL~~qv 209 (520)
..++..++.-..++++|-..|+.++-|...+.=+.....+|+.+...- ..=...+..-...|..+. . ..-+.+
T Consensus 174 ~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l 253 (563)
T TIGR00634 174 RQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGL 253 (563)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHH
Confidence 445555555555666666666777777766666656666666655421 111222333333342210 0 011111
Q ss_pred H------------hHHhHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhHH-------HHHHhhhhHH
Q 046111 210 A------------QSSYVKKELEVARNKIKELQRQIQLDA---NQTKGQLLLLKQQVSGLQAK-------EEEAIKKDVE 267 (520)
Q Consensus 210 ~------------e~~~v~~ELe~ar~Kir~Lqkk~~~~a---~q~K~qi~~Lkq~V~~Lq~~-------Eee~~~~d~E 267 (520)
. .+..+...|+.+...+.++...++... .-.-+.+..+.+++..++.- -.+....-.+
T Consensus 254 ~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 254 GEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 112222233333333333333333311 11223344444444444432 2334444455
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
+++++..+...+.++.+|+.....++.+-.+++.+|..+
T Consensus 334 l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 334 IKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544
No 163
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.89 E-value=43 Score=33.17 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCcchhhHHhhccc----cc-----cCCCCcccchhhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111 97 EDILPEFEDLLSGE----IE-----YQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYG 166 (520)
Q Consensus 97 ~~llpef~~l~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 166 (520)
.+|--||+.+-+|. || +|.|..... ........-|.......+-+.-|-.+| +||.=||
T Consensus 63 ~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~---------~d~~~w~~al~na~a~lehq~~R~~NL--eLl~~~g 130 (221)
T PF05700_consen 63 PLLQAELERVASGEPMQGLDMSRYELPPPPSGKS---------NDVEAWKEALDNAYAQLEHQRLRLENL--ELLSKYG 130 (221)
T ss_pred hhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 67778888887772 33 222221110 011122345666777777777787777 5788888
No 164
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.70 E-value=99 Score=37.18 Aligned_cols=145 Identities=21% Similarity=0.242 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 046111 151 QEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQ 230 (520)
Q Consensus 151 qERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lq 230 (520)
-+++..|-.++-=+--||-.-+.+.|.---|.+-+.+| ..+...|++-|.+|..++++...+++++...=.-++--.
T Consensus 231 l~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~i---eE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 231 LKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEI---EEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR 307 (1265)
T ss_pred HHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665555555655555555555554444333 346667777788888888777777666543322222111
Q ss_pred HH-----------HHHHHHhhHHHHHHHHH-------HHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111 231 RQ-----------IQLDANQTKGQLLLLKQ-------QVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL 292 (520)
Q Consensus 231 kk-----------~~~~a~q~K~qi~~Lkq-------~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L 292 (520)
.+ +..+...-++|++.|+| ++.+|..+-.+.-+..+++.....+|+++-.-|+++.+....|
T Consensus 308 t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l 387 (1265)
T KOG0976|consen 308 TRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLEL 387 (1265)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11222223455555554 4667777777777777788888888877766677777777766
Q ss_pred HHHHHH
Q 046111 293 QIEKRE 298 (520)
Q Consensus 293 Q~EK~e 298 (520)
|.+..+
T Consensus 388 ~aerqe 393 (1265)
T KOG0976|consen 388 QAERQE 393 (1265)
T ss_pred HHHHHH
Confidence 655433
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.66 E-value=36 Score=34.40 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhh
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVE 355 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVE 355 (520)
.+++.+...|+......+.++..|..++..++..|. .+.++....-...+.|..+++..|.+.-.-.+
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~------------~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA------------RLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888889999999888888876552 22233333333334455566655555444444
Q ss_pred HH
Q 046111 356 EL 357 (520)
Q Consensus 356 EL 357 (520)
+|
T Consensus 125 ~L 126 (246)
T PF00769_consen 125 EL 126 (246)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 166
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=84.31 E-value=11 Score=38.24 Aligned_cols=64 Identities=31% Similarity=0.389 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH-HHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV-AKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V-a~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
++.++..|.-.+++|+....++..|+++++.+-+.. -.++ .+.++++..|..+|--|..|+|+.
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-----r~ieEkk~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-----REIEEKKMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556667777778888888888888999888653211 1233 456899999999999999999985
No 167
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.02 E-value=28 Score=37.32 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 153 REVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAE-RKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 153 RE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsE-n~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
+.+|.-.+-+.-+. +.=....++...+|.--..+|..--.+|.+-|.- |..|+..+.+|..+..+|..++.+.+.+..
T Consensus 216 kDWR~hleqm~~~~-~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 216 KDWRSHLEQMKQHK-KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred chHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45554444333322 1223446777777777778888877888887765 778999999999999999999999999988
Q ss_pred HHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111 232 QIQLDANQTK---GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL 285 (520)
Q Consensus 232 k~~~~a~q~K---~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL 285 (520)
-|....+.-. +++..+|+++ +.++..+...-+=+..| ++|..|..|+.+|
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~em---eerg~~mtD~sPlv~IK-qAl~kLk~EI~qM 347 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEM---EERGSSMTDGSPLVKIK-QALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCHHHHHH-HHHHHHHHHHHHh
Confidence 8776554433 3444444433 33554444444422222 3444555555444
No 168
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.99 E-value=79 Score=35.51 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=112.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVE----IDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~E----i~~L~~kI~sLEsEn~RL~~q 208 (520)
.+..+.+|..++.-+.+|.+.|..-..+..+... ...+|.+.|...... ++.|...+..++.+-..+.+.
T Consensus 110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~------~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 110 LDEIEEDIKEILDELDELLESEEKNREEIEELKE------KYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666655555444332 345555666555543 344666666666666666653
Q ss_pred HH--hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhh-----hHHHHHHHhhHHhHHHH
Q 046111 209 IA--QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKK-----DVELEKKLKSVKDLEVE 281 (520)
Q Consensus 209 v~--e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~-----d~E~EkKl~~l~~LE~E 281 (520)
.. ++..+.+.|..++..+..|...|...=.=-+.=-..+-.|+..|+..=.++... +.++.+. ++.++..
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~---i~~i~~~ 260 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEE---IEQIEEQ 260 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHH
Confidence 33 467777888888888888887776543333322223334444444333222221 1122222 2333333
Q ss_pred H------------HHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 282 V------------VELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 282 v------------~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
+ .+.+..|..++.+...|-..|+. -+.+-..| ..-...+..-++.++..|..|..+++.|+.+
T Consensus 261 l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~---E~~Ak~~V--~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 261 LEEALALLKNLELDEVEEENEEIEERIDQLYDILEK---EVEAKKYV--EKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33444444444444444333321 11111111 1112233466778888888899999999877
Q ss_pred ccchhhHHHHHHHHH
Q 046111 350 RFGEVEELVYLRWVN 364 (520)
Q Consensus 350 R~seVEELVYLRWVN 364 (520)
.-=.=.|+--.|=++
T Consensus 336 Y~L~~~e~~~~~~l~ 350 (560)
T PF06160_consen 336 YTLNHNELEIVRELE 350 (560)
T ss_pred cCCCchHHHHHHHHH
Confidence 644444443333333
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.82 E-value=17 Score=30.72 Aligned_cols=60 Identities=15% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA----QSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~----e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
.-.||..+...-..|..|.++|..|+.+|..|.++-. +...++.+...|..+|+-|=.|+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777777777776663332 22334455555555555554444
No 170
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.66 E-value=46 Score=32.52 Aligned_cols=150 Identities=23% Similarity=0.234 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
..+-|..|..-|..++.|=..|+.++..--.|--.... .. ....-.-.|...+..|++|..|-..-..-...+
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~~------~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL 86 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-RR------SEEEHSPDLEEALIRLEEEQQRSEELAQVNALL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-cc------ccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35556677777777766666666666211000000000 00 000002234448899999999999988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111 216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE 295 (520)
Q Consensus 216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E 295 (520)
+++|+.++..+..|..-+.+...+-..=-.-|..+=..++..++....- +..-=.++=.|=-+|+-+||.-.+|...
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y---~~~eh~rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY---LSSEHSRLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877655544332222233334444444332111 1111223455667888888888877654
No 171
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.58 E-value=57 Score=33.58 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 135 DNARELERLRSLVLELQEREVKLEGELLE 163 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLE 163 (520)
.+..++..|+..+..|+.+-.+|+..+-.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35778888888888888777777665543
No 172
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.41 E-value=17 Score=36.08 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 046111 282 VVELKRKNKELQIEKRE 298 (520)
Q Consensus 282 v~ELRr~Nk~LQ~EK~e 298 (520)
+.+|+..|.+|+.+...
T Consensus 134 ~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 134 INGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 173
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.94 E-value=65 Score=33.70 Aligned_cols=121 Identities=26% Similarity=0.303 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------hhhhHHH
Q 046111 188 IDMLNITINSLQAER-KKLQ-EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV-------SGLQAKE 258 (520)
Q Consensus 188 i~~L~~kI~sLEsEn-~RL~-~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V-------~~Lq~~E 258 (520)
++.|..-|.-|+.-+ +.|. +.+.+...++..|+.|+-++.=|+.++...++. ++....-...+ ..+....
T Consensus 128 Le~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea-~e~~~~~~~~e~eke~~~r~l~~~~ 206 (269)
T PF05278_consen 128 LECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEA-KEIYDQHETREEEKEEKDRKLELKK 206 (269)
T ss_pred HHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555565432 4444 467777778888888887777777777654432 11111111111 1111122
Q ss_pred HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 259 ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
.+.-....++.++-+.++++-..+.|+|....+|+++-..|...+..+.++
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233333334444455555555555555555555555544444443
No 174
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.92 E-value=51 Score=32.47 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 140 LERLRSLVLELQEREVKLEGELLEY 164 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy 164 (520)
+..++..+..++..-..|..++-+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666655555555554443
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.83 E-value=18 Score=33.92 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccc---
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFG--- 352 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~s--- 352 (520)
.+|..++.+|+..+.+|+.+...|...|... .+..|.+++ ...+..|...++.|...++.|+.++..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L------~~~~t~~el----~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ 144 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASL------SSEPTNEEL----REEIEELEEEIEELEEKLEKLRSGSKPVSP 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 3344444444444444444444443333322 223333443 456888888889999999999987655
Q ss_pred -hhhHH--HHHHHHHHHHH
Q 046111 353 -EVEEL--VYLRWVNACLR 368 (520)
Q Consensus 353 -eVEEL--VYLRWVNACLR 368 (520)
+++.+ -|-+|...|-.
T Consensus 145 ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 145 EEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 23322 37788877754
No 176
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.77 E-value=30 Score=32.97 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046111 216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLK 248 (520)
Q Consensus 216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lk 248 (520)
+.+......||.++..|+..+...-|.+|..+|
T Consensus 119 r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 119 REEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 177
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.52 E-value=88 Score=34.92 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhh
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVE 355 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVE 355 (520)
.+++.....+++.....-....++...++..+.++..+.+. ++-++..+++...++..=.++..++=..+..-+...+
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~--~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~ 381 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS--DESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA 381 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433444433333335556777777777777666665 3344556666777666666666666666555554444
Q ss_pred H
Q 046111 356 E 356 (520)
Q Consensus 356 E 356 (520)
+
T Consensus 382 ~ 382 (563)
T TIGR00634 382 K 382 (563)
T ss_pred H
Confidence 3
No 178
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.51 E-value=90 Score=35.07 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchh-----HHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTES-----EKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~-----~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
...++..|.....+.......+...|..|+..+..+..-|.+ .++..+-+=+|+.|..|+++...+.+-
T Consensus 449 ~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~A 522 (560)
T PF06160_consen 449 VSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEA 522 (560)
T ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 334444444444444455566666777777766655554422 244445566788888888887777654
No 179
>PRK00106 hypothetical protein; Provisional
Probab=82.30 E-value=96 Score=35.21 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111 284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~ 320 (520)
+|.....+|+..+.++..........+..++.+|.++
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e 169 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3334444444444444444444445566677777555
No 180
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=82.20 E-value=2.2 Score=39.84 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
|+.+..|+.++..|.+||..|+.++..+...|.+|...
T Consensus 93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 68899999999999999999999999999999999754
No 181
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.19 E-value=13 Score=34.89 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=48.2
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQA 200 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 200 (520)
...+..+|..|+..+.+|+.....|+.+|-.+.. .....+|...+..-..++..+..++..|++
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~----~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS----EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445778999999999999999999999988877 555666666666666666666666666655
No 182
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.18 E-value=1.3e+02 Score=36.71 Aligned_cols=32 Identities=41% Similarity=0.453 Sum_probs=17.7
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 130 ETEMADNARELERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 130 ~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eL 161 (520)
+++.|-..+|+..-..-+.+|+++|..|+.-+
T Consensus 166 eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~ 197 (1072)
T KOG0979|consen 166 ETEKAIGAEELLQYHIELMDLREDEKSLEDKL 197 (1072)
T ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666666665543
No 183
>PRK11281 hypothetical protein; Provisional
Probab=81.49 E-value=1.4e+02 Score=36.71 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEY 164 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy 164 (520)
..+.+.|+..+....++=.....+|.++
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4445555555555555444444444443
No 184
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.49 E-value=30 Score=36.19 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAE 307 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE 307 (520)
..+..+..++......|..+.......|+..+
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445455545555555555544445333
No 185
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.88 E-value=16 Score=34.61 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 224 NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 224 ~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
.-+|+|.++ ....+|+++.-|||+=-.|+-.+....=+- |+++--.+||.+-.+|.+-...|-.|+..+...|
T Consensus 32 mSVReLNr~---LrG~~reEVvrlKQrRRTLKNRGYA~sCR~----KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 32 MSVRELNRH---LRGLSREEVVRLKQRRRTLKNRGYAQSCRV----KRVQQKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred hhHHHHHHH---hcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777774 456789999999999999999987653332 4444446666666666666666666666666666
Q ss_pred HHHHHHHh
Q 046111 304 DAAESKIA 311 (520)
Q Consensus 304 ~~AE~~~~ 311 (520)
++-..+..
T Consensus 105 da~k~k~e 112 (135)
T KOG4196|consen 105 DAYKSKYE 112 (135)
T ss_pred HHHHHHHH
Confidence 65554443
No 186
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.85 E-value=1.2e+02 Score=35.48 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchh
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEV 354 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seV 354 (520)
++.|..+..+.-.....|..+-.+|=-+|++..-.....-.||+.++-..----++.+++ +.++|..|+.=+..-+
T Consensus 235 v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~----ve~Ev~Rl~qlK~s~m 310 (660)
T KOG4302|consen 235 VKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQ----VEKEVDRLEQLKASNM 310 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHH----HHHHHHHHHHHHHHhH
Confidence 666777777777777777777788888887776655555555544433210001111111 2234444444444446
Q ss_pred hHHHHHHHH
Q 046111 355 EELVYLRWV 363 (520)
Q Consensus 355 EELVYLRWV 363 (520)
.|||.-+|+
T Consensus 311 Keli~k~r~ 319 (660)
T KOG4302|consen 311 KELIEKKRS 319 (660)
T ss_pred HHHHHHHHH
Confidence 666666653
No 187
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.84 E-value=66 Score=32.43 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ 221 (520)
.++|..++.+|..|+.+..+-++.+....--..|.+-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999999998888877766655444444443
No 188
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.83 E-value=98 Score=34.36 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=17.0
Q ss_pred hhccHHHHHHHHHHHHHH-HHHHHHH
Q 046111 133 MADNARELERLRSLVLEL-QEREVKL 157 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeL-qERE~~L 157 (520)
.....+|+..|+..+.++ .++-..+
T Consensus 118 l~e~~~El~~l~~~l~~l~~~~~~~~ 143 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQNEKSRIL 143 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 445678888888888888 4443333
No 189
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.82 E-value=0.5 Score=55.06 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
..+.++...+..|+|.|+.|+.|..+|+-.++.+..
T Consensus 419 ~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k 454 (859)
T PF01576_consen 419 NELEELQEQLEELERENKQLQDELEDLTSQLDDAGK 454 (859)
T ss_dssp ------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc
Confidence 345666677778888888888888888777776654
No 190
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.65 E-value=1.3e+02 Score=35.67 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=70.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhhhH
Q 046111 182 KIKTVEIDMLNITINSLQAERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQLDANQTKGQ-LLLLKQQVSGLQA 256 (520)
Q Consensus 182 ~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~q-i~~Lkq~V~~Lq~ 256 (520)
.........+..++..|+++...|...+..+ -....+|..+..++..|+.++.. ++.++.. -.-|+.+....+.
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~-~keS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES-AKESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677888888888888777655433 33444555555566666666652 2222221 1122222222222
Q ss_pred HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
-+.....-..|++.-...+.-||.|+..=|....++--.-++|-.+|+....
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 2211111234455555567778888888888777777777777777776653
No 191
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.31 E-value=1.5e+02 Score=36.26 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=67.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
.+|..++..-...+..-...+.+++++...+++.+....-+..+++..-.++...--+++...+.++..+..|=.++..+
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555555666667777888889999999998888888888888888988888999999999999998888888776
Q ss_pred hHHH
Q 046111 255 QAKE 258 (520)
Q Consensus 255 q~~E 258 (520)
..-.
T Consensus 559 ~~~~ 562 (1041)
T KOG0243|consen 559 DRLD 562 (1041)
T ss_pred hccc
Confidence 5544
No 192
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.17 E-value=1.7e+02 Score=36.62 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=21.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGL 167 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L 167 (520)
++.....++.++..++.|+++-..|+.=+-.|...
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y 259 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRY 259 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777776555444443
No 193
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.12 E-value=19 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKE 218 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~E 218 (520)
+-.||..+...-..|..|.++|+-|.+.|..|..++.....-+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~ 50 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE 50 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 446777777778899999999999999999999877654444433
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.33 E-value=60 Score=36.32 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046111 212 SSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV 251 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V 251 (520)
...+.+.+..|+.|+++++.+.+.....--++|.-|++||
T Consensus 405 n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777766665555555555555554
No 195
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.27 E-value=0.61 Score=54.41 Aligned_cols=98 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------------hhhhhHHHHHHHHHhhhhhHHHHHHH
Q 046111 129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGL---------------KEQESDIVELQRQLKIKTVEIDMLNI 193 (520)
Q Consensus 129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L---------------KEQEa~v~ELe~~L~~k~~Ei~~L~~ 193 (520)
...+..|+..+++..+..+..|..+-.++..+|-++..- +.-.+.+..|.+.+......++.+..
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~ler 433 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELER 433 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566667777777777777777777777777666332 22334455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046111 194 TINSLQAERKKLQEQIAQSSYVKKELEVARNKI 226 (520)
Q Consensus 194 kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki 226 (520)
....|+.|..-|..++.+..+-+.+|+.++..+
T Consensus 434 e~k~L~~El~dl~~q~~~~~k~v~eLek~kr~L 466 (859)
T PF01576_consen 434 ENKQLQDELEDLTSQLDDAGKSVHELEKAKRRL 466 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHhhccchhhhhhhccchHHHHHHHHHH
Confidence 555555555555555555555555566555433
No 196
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.22 E-value=91 Score=33.03 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=25.4
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111 126 NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYG 166 (520)
Q Consensus 126 ~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 166 (520)
.+.|...-+.+-..+..++..+.+|.++--.+--++-+|..
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777777777777666666555555544
No 197
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.59 E-value=22 Score=34.26 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
+.+|+..+......|..|...+..|+.+...|..++.+..+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555544444444433
No 198
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.59 E-value=85 Score=32.35 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=10.2
Q ss_pred hccHHHHHHHHHHHHHHH
Q 046111 134 ADNARELERLRSLVLELQ 151 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLq 151 (520)
..+..++..|+..+..|+
T Consensus 84 ~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 84 AELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666655543
No 199
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.22 E-value=90 Score=32.43 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=28.3
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHH
Q 046111 326 REEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360 (520)
Q Consensus 326 ~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYL 360 (520)
+++++.|......|..+|++|+.++. +|-|.||-
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~~~~-~~Re~iF~ 232 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQAQAQ-DPREVIFA 232 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHhhH
Confidence 67777777777788899999999998 88888874
No 200
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=77.74 E-value=98 Score=32.61 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
|-..|.||.++|..|+--||.-..-|+.-++++
T Consensus 110 l~kyiReLEQaNDdLErakRati~sleDfeqrL 142 (333)
T KOG1853|consen 110 LRKYIRELEQANDDLERAKRATIYSLEDFEQRL 142 (333)
T ss_pred HHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHH
Confidence 344567777888888887776665555555443
No 201
>PRK09343 prefoldin subunit beta; Provisional
Probab=77.03 E-value=58 Score=29.59 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
|..++...-.++..+..+|..+-.....|..++.+...+.+||+...
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP 51 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444445667777778888888888888888888888888777654
No 202
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.43 E-value=1.4e+02 Score=33.67 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL 181 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L 181 (520)
.+||+.|...+++..+=....+..+.+|..|+.-.+-..+..++|
T Consensus 230 ~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~sel 274 (521)
T KOG1937|consen 230 EEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSEL 274 (521)
T ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 556888888888887777777778888888776665554444433
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=76.15 E-value=72 Score=30.67 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 046111 220 EVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 220 e~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
+.|+...+.|+.++...-..+|.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~ 107 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777666666644
No 204
>PRK11281 hypothetical protein; Provisional
Probab=75.85 E-value=1.6e+02 Score=36.36 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 046111 190 MLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 190 ~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
-|...+..++.+-+..+++++++
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666555555555555
No 205
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=75.40 E-value=2.3e+02 Score=35.64 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=69.6
Q ss_pred ccchhhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046111 119 KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSL 198 (520)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sL 198 (520)
+||.......| .--++.|+.+...-..-=...+..|--|.+||+--- .++-.+...-..|+.-+..++.+
T Consensus 173 kfD~IF~~tky-------~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e---~~~l~i~~~~~ki~~~ke~v~e~ 242 (1294)
T KOG0962|consen 173 KFDDIFSATKY-------TKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAE---VLRLNIHSGQRKIEKSKEEVSEL 242 (1294)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666 335666777666655544455555555666665322 12233444555666677777777
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 199 QAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 199 EsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
+.+-....+.+.++.....||+-.-.+++.|+-+.+....+.
T Consensus 243 e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~ 284 (1294)
T KOG0962|consen 243 ENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQI 284 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777766655544443
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.11 E-value=1.2e+02 Score=32.30 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhhhH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYY----GLKEQESD-IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~----~LKEQEa~-v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
-.-++.|+.-++.|++=-..|..+.-... ...|++.. |.+-=++|...+++|..|...++.--+++.+.+++|..
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888776666666554443 33333333 33444677778888888888888777777777776665
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 212 SSYVKKELEVARNKIKELQRQIQLDANQ 239 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqkk~~~~a~q 239 (520)
+. ++|-.||++++..+-.
T Consensus 239 Ll----------sqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 239 LL----------SQIVDLQQRCKQLAAE 256 (306)
T ss_pred HH----------HHHHHHHHHHHHHhhh
Confidence 54 3444555555544433
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.07 E-value=39 Score=31.16 Aligned_cols=96 Identities=24% Similarity=0.321 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d 265 (520)
.-|+.|.-.|..++.|..-|+.+++....-+.+ ++.+|=.|-..... .+....++..|+.++..|+.+....+.-
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~---l~~Eiv~l~~~~e~-~~~~~~~~~~L~~el~~l~~ry~t~Lel- 90 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDE---LREEIVKLMEENEE-LRALKKEVEELEQELEELQQRYQTLLEL- 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345555556666666665555555544433332 22222222222211 1334455666777777776665443222
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHH
Q 046111 266 VELEKKLKSVKDLEVEVVELKRK 288 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~ 288 (520)
+..|...+.+|...|.+||..
T Consensus 91 --lGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 91 --LGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred --hcchHHHHHHHHHHHHHHHHH
Confidence 223334444555555555443
No 208
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.03 E-value=1.6e+02 Score=34.36 Aligned_cols=47 Identities=32% Similarity=0.361 Sum_probs=27.6
Q ss_pred hhcccchhhHHHH--HHHHHHHHHHHHhhcCCCCCCcccccc----ccCCCcchHH
Q 046111 347 QMNRFGEVEELVY--LRWVNACLRYELRNYQAPAGKTSARDL----NKSLSPKSQE 396 (520)
Q Consensus 347 q~dR~seVEELVY--LRWVNACLR~ELrn~~~p~gk~sA~DL----sk~lSpkSqe 396 (520)
|.+=|.+|.+||- |.=-|.|+. .-.|+-+|||.-+.= +.=+=|++-+
T Consensus 374 Q~~VF~e~~~lv~S~lDGYnVCIF---AYGQTGSGKTyTM~G~~~~~~Giipral~ 426 (670)
T KOG0239|consen 374 QDDVFEEVSPLVQSALDGYNVCIF---AYGQTGSGKTYTMSGPTPEDPGIIPRALE 426 (670)
T ss_pred HHHHHHHHHHHHHHHhcCcceeEE---EecccCCCccccccCCCcccCCccHHHHH
Confidence 4555778888873 444455542 223678999966654 3444455543
No 209
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=74.80 E-value=41 Score=35.51 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=44.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 128 VYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 128 ~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
-|-++.---+-=|.+||..+++-+.| |.+.++.|.+|..||.. +.=.=+|+|=.|.++
T Consensus 58 QYLTPLQQKEV~iRHLkakLkes~~~-------------l~dRetEI~eLksQL~R---------MrEDWIEEECHRVEA 115 (305)
T PF15290_consen 58 QYLTPLQQKEVCIRHLKAKLKESENR-------------LHDRETEIDELKSQLAR---------MREDWIEEECHRVEA 115 (305)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 45555444455577777666555443 34456667777777642 223346778888888
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 208 QIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 208 qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
|++ |-.||.+|+-|+.=|.
T Consensus 116 QLA--------LKEARkEIkQLkQvie 134 (305)
T PF15290_consen 116 QLA--------LKEARKEIKQLKQVIE 134 (305)
T ss_pred HHH--------HHHHHHHHHHHHHHHH
Confidence 875 3446666665544433
No 210
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.39 E-value=2.2e+02 Score=35.01 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=83.3
Q ss_pred hhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHHHHHHHHHH---HH
Q 046111 164 YYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ----IAQSSYVKKELEVARNKIKELQRQIQ---LD 236 (520)
Q Consensus 164 y~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q----v~e~~~v~~ELe~ar~Kir~Lqkk~~---~~ 236 (520)
+..+++-...+.+|+..|..-..+|.....+|..+--+-++++.+ ..++..+..|+..++.+.-.+|.-+. ..
T Consensus 670 ~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~ 749 (1200)
T KOG0964|consen 670 LKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKE 749 (1200)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Confidence 355666666677777777777777777777777776666666654 44566666677777766666665443 33
Q ss_pred HHhhHHHHHHHHHHHhhhhHHH-HHH-hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 237 ANQTKGQLLLLKQQVSGLQAKE-EEA-IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 237 a~q~K~qi~~Lkq~V~~Lq~~E-ee~-~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
....+..+..+.++...+++.= .++ ..-.++. .+++..|-.+|..|...+..++.+--++..+-.+-++-+
T Consensus 750 Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee---~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 750 LEEIKTSLHKLESQSNYFESELGSELFSQLTPEE---LERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443321 110 1112222 244566777777777777777777666555555555444
No 211
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.25 E-value=1.4e+02 Score=33.18 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 143 LRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
|-++--++.+|=..|+.+|..+| ..+-.+-.|+.+..++.+-+..++...|.+..+|+++..++.
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~------k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCE------KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666777666554 455566677777788888888888888888888888776654
No 212
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.25 E-value=1e+02 Score=31.05 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=76.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhH
Q 046111 211 QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNK 290 (520)
Q Consensus 211 e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk 290 (520)
++..++.+|-.++++++....++..........- ..|+.-+.+.-+...+.+---..+..|+.|+.+||....
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~-------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQ-------LELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3444444555555555555544443333222222 222222333333333333333457788888888888887
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcC---CCc-hhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHH-HHH
Q 046111 291 ELQIEKRELLVKLDAAESKIASLS---NMT-ESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV-YLR 361 (520)
Q Consensus 291 ~LQ~EK~eL~~kL~~AE~~~~~ls---nv~-e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELV-YLR 361 (520)
.+...+.+...-..+-++++...+ ... --.-|.+.++|+..+|+.+++-....|+=+.-|..+-|=+| |.+
T Consensus 105 ~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQk 180 (202)
T PF06818_consen 105 CAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQK 180 (202)
T ss_pred hhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 773333333321111122221111 111 12356677888888888899888888888888887776543 554
No 213
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.36 E-value=1.1e+02 Score=31.03 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 046111 194 TINSLQAERKKLQEQ 208 (520)
Q Consensus 194 kI~sLEsEn~RL~~q 208 (520)
+|..|+.+.++++.+
T Consensus 34 ~a~~Leek~k~aeee 48 (246)
T PF00769_consen 34 TAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 214
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.13 E-value=72 Score=31.39 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
+.+||..+.+|++....+-.+|.
T Consensus 133 i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 133 IKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444333333
No 215
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=72.98 E-value=1.2e+02 Score=31.48 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHhHHhHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL------QEQIAQSSYVKKELEVARNKIKELQ 230 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL------~~qv~e~~~v~~ELe~ar~Kir~Lq 230 (520)
...+..++.+|.....+++....++...+.+|.-+ .........+..++..++.++..|+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655322 2233344555555555555555554
No 216
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.91 E-value=1.3e+02 Score=31.54 Aligned_cols=82 Identities=30% Similarity=0.436 Sum_probs=50.4
Q ss_pred chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046111 167 LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLL 246 (520)
Q Consensus 167 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~ 246 (520)
+.-|++.+-+++..+.--..+|+.|.-.|+.++..-..+++++.+ +..++...+.+|..+...| +++=..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~---~~~eik~l~~eI~~~~~~I-------~~r~~~ 102 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQ---SKAEIKKLQKEIAELKENI-------VERQEL 102 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 566777888888888888888888888888888777766655443 2334444444444444444 444444
Q ss_pred HHHHHhhhhHHH
Q 046111 247 LKQQVSGLQAKE 258 (520)
Q Consensus 247 Lkq~V~~Lq~~E 258 (520)
|+.|+-.++.-+
T Consensus 103 l~~raRAmq~nG 114 (265)
T COG3883 103 LKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHcC
Confidence 555555554444
No 217
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.33 E-value=33 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
..++.+..+++..+.+|+.|.. +-..+...|..|...|..|+.++....+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~---ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRR---ERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666554 3333444444455555555444444333
No 218
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.95 E-value=1.7e+02 Score=34.68 Aligned_cols=109 Identities=24% Similarity=0.297 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHHHH----------HHh
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQIQLD----------ANQ 239 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~~~----------a~q 239 (520)
..+|+.+|..-..+-+.|...+...+.+.+.++.++.+.. .+..+|+.++.-...+.-+++.. ...
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3455555555555555555544444444444444444332 33444444444444444444333 223
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111 240 TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL 285 (520)
Q Consensus 240 ~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL 285 (520)
+..++..|..+|..|+..=+.....+.|+..| +++||.++.-.
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k---c~~Le~el~r~ 713 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAK---CRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH---HHHHHHHHHhh
Confidence 35666677778888777644444455555544 45666555443
No 219
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.65 E-value=29 Score=39.22 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHH--H--HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAE--R--KKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ 250 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsE--n--~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~ 250 (520)
..+++.+..+|+.|+.. + .-++.-..+...++.|+...+.+++-+++.++.+.++.++++..|++.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 34555555666666553 1 133455556677777777888888888888888888777777666654
No 220
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=71.61 E-value=88 Score=30.80 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.+.+.+..+|..-+.++.+++..+.++..-..+|......++..+.....+..+.+.....|++.+.
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555554444444444444444444444443
No 221
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=71.18 E-value=1.5e+02 Score=33.30 Aligned_cols=184 Identities=22% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhhhhHHHHHHhhhhHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL-LLKQQVSGLQAKEEEAIKKDVE 267 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~-~Lkq~V~~Lq~~Eee~~~~d~E 267 (520)
+.|...|++|..+|+.|..++..+....+=+..-.--++.--..||..++|-.+=|- .|=.++-.|++..+..+...
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Y-- 123 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVY-- 123 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhh--
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH-HHHhhcCCCchhHHHHHH-HHHHHhhhhhc--HHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAE-SKIASLSNMTESEKVAKA-REEVNNLRHAN--DDLLKQV 343 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE-~~~~~lsnv~e~~~Va~a-~eE~~~LR~~N--EdL~kqV 343 (520)
-.+=|.--.+|-|..++|++||..|-.-|.--+ -.. ...+.++ +-|..-+-..| |.|.++-
T Consensus 124 -------e~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~v--------nKlm~ki~Klen~t~~kq~~leQLRre~ 188 (552)
T KOG2129|consen 124 -------EVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFV--------NKLMNKIRKLENKTLLKQNTLEQLRREA 188 (552)
T ss_pred -------hhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHH--------HHHHHHHHHhhhhhHHhhhhHHHHHHHH
Q ss_pred HHHhhcccchhhHHHHHHH-----HHHHHHHHHhhcCCC-CCCccccccccC
Q 046111 344 EGLQMNRFGEVEELVYLRW-----VNACLRYELRNYQAP-AGKTSARDLNKS 389 (520)
Q Consensus 344 EqLq~dR~seVEELVYLRW-----VNACLR~ELrn~~~p-~gk~sA~DLsk~ 389 (520)
=+|-+-=--+-|=||.-=| +|+==||=...|+.| +.+.+-||..|.
T Consensus 189 V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~ 240 (552)
T KOG2129|consen 189 VQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKI 240 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcC
No 222
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=70.36 E-value=95 Score=30.98 Aligned_cols=101 Identities=19% Similarity=0.343 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLE-YYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLE-y~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
..+|.++-.+|-.|++|=-+|+-.|-+ |..|.+|.-.-+-++.. +..|+....+|...+..+..+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~--------------v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD--------------VTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 558999999999999999999999998 55556555444444333 333444444444444444443
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Q 046111 216 KKELEVARNKI-KELQRQIQLDANQTKGQLLLLKQQV 251 (520)
Q Consensus 216 ~~ELe~ar~Ki-r~Lqkk~~~~a~q~K~qi~~Lkq~V 251 (520)
.+=-....-.+ .-+|++|++..+|-.+|++--+..+
T Consensus 137 lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (189)
T TIGR02132 137 LEGQQKTQDELKETIQKQIKTQGEQLQAQLLEKQEAL 173 (189)
T ss_pred HhcCccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33111111111 2367888888888888875544443
No 223
>PRK11519 tyrosine kinase; Provisional
Probab=70.10 E-value=1.8e+02 Score=33.65 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
++.++..+.+.|.+..+|.|...-.+.--..|..|++.+..
T Consensus 358 l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 358 LNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566677777777777766666666667777766653
No 224
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.92 E-value=2.2e+02 Score=33.09 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=89.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQE-QIAQSSYVKKEL----EVARNKIKELQRQIQLDANQTKGQLLLLK 248 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~-qv~e~~~v~~EL----e~ar~Kir~Lqkk~~~~a~q~K~qi~~Lk 248 (520)
+.|||..+.....|++.++...+..++..++--. -...-..+..|= +..--+|-.|+ .+.+|.+..+...+
T Consensus 52 ~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~ele----neLKq~r~el~~~q 127 (772)
T KOG0999|consen 52 LEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELE----NELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6788888888888888888888888777766532 111111111111 11122333333 33444445555555
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHH---
Q 046111 249 QQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKA--- 325 (520)
Q Consensus 249 q~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a--- 325 (520)
.....|.+...+.-...+.+|--- ..|-.|+.|.+=.-.+|-.+-.+|-.- |++--.-|+..
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR---~rlr~elKe~KfRE~RllseYSELEEE------------NIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQR---RRLRDELKEYKFREARLLSEYSELEEE------------NISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh------------cchHHHHHHHHhhh
Confidence 444444444433333333333211 224445555554444444444444211 22222222222
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 046111 326 REEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVN 364 (520)
Q Consensus 326 ~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVN 364 (520)
.=|+..|||.+..|..++|=|.+ -+||.+-|+-|-
T Consensus 193 QVEyEglkheikRleEe~elln~----q~ee~~~Lk~IA 227 (772)
T KOG0999|consen 193 QVEYEGLKHEIKRLEEETELLNS----QLEEAIRLKEIA 227 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 23688899999999999988765 478888888774
No 225
>PRK10869 recombination and repair protein; Provisional
Probab=69.81 E-value=2e+02 Score=32.47 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhh--hhH-HHHHHHHHHHHHH-H-HH---HHH---
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIK--TVE-IDMLNITINSLQA-E-RK---KLQ--- 206 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k--~~E-i~~L~~kI~sLEs-E-n~---RL~--- 206 (520)
.++..|+.--.+..+|---|+-++-|...+.=+.....+|+.+...- ... ...+..-...|.. + .. .|.
T Consensus 171 ~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~ 250 (553)
T PRK10869 171 RDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAK 250 (553)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 33444444444444444555666666666655555566666555421 111 2223333333422 1 00 011
Q ss_pred HHH-------HhHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhhHHH-------HHHhhhhHHHH
Q 046111 207 EQI-------AQSSYVKKELEVARNKIKELQRQIQLDAN---QTKGQLLLLKQQVSGLQAKE-------EEAIKKDVELE 269 (520)
Q Consensus 207 ~qv-------~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~---q~K~qi~~Lkq~V~~Lq~~E-------ee~~~~d~E~E 269 (520)
..+ ..+..+...|+.+...+.++...+..... -.-+.+..+.+++..|+.-. +++...-.+++
T Consensus 251 ~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~ 330 (553)
T PRK10869 251 QLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLL 330 (553)
T ss_pred HHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111 11123444455555555555555544332 12344555555555444432 45566667788
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
.+++.+.+.+....+|+.....+..+-.+++.+|..+..+
T Consensus 331 ~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 331 EEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888766544
No 226
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.65 E-value=14 Score=41.11 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 262 IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 262 ~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
-...+-+-+=.-.+++++.++..|.+-|+.|..||..|..|...-..+|
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445556666777899999999999999999999999988877666665
No 227
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.62 E-value=2.1e+02 Score=34.42 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=21.8
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 046111 127 KVYETEMADNARELERLRSLVLELQEREVKL 157 (520)
Q Consensus 127 ~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~L 157 (520)
..| .---.|..-|+-|+..|+.+.-|+.-+
T Consensus 606 S~Y-~LG~tN~~Kv~TL~~~~k~~~~~~~~~ 635 (1104)
T COG4913 606 STY-RLGSTNDAKVETLRETVKAMLSREDFY 635 (1104)
T ss_pred cee-eecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334 334557888999999999998887543
No 228
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.62 E-value=1.4e+02 Score=34.38 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
++.++..+-..|.+..+|.|...-.+.--..|..|.+.++.
T Consensus 358 l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 358 LNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888877777777777777776654
No 229
>PF13514 AAA_27: AAA domain
Probab=69.56 E-value=2.7e+02 Score=33.88 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=38.8
Q ss_pred HHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111 271 KLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 271 Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~ 320 (520)
....++.|..+...+......++.+..+....+..++.+...++......
T Consensus 344 ~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 393 (1111)
T PF13514_consen 344 ARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPE 393 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCh
Confidence 34567778888888888888888888888888888888887777765444
No 230
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=69.54 E-value=1.9e+02 Score=32.21 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhcC
Q 046111 10 AASIAAYAVKQLNLKA 25 (520)
Q Consensus 10 a~s~a~~~~~~~~~~~ 25 (520)
--.|.||+--++.+|-
T Consensus 12 LgGVIA~~gD~ig~kv 27 (499)
T COG4372 12 LGGVIAYAGDTIGKKV 27 (499)
T ss_pred HHhHHHHHhhHHHhhh
Confidence 3345566656655543
No 231
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.03 E-value=2.4e+02 Score=33.15 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=7.8
Q ss_pred HhhhhhcHHHHHHHHHH
Q 046111 330 NNLRHANDDLLKQVEGL 346 (520)
Q Consensus 330 ~~LR~~NEdL~kqVEqL 346 (520)
+.|++.++.....|.++
T Consensus 692 ~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 692 EILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555444444433
No 232
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.39 E-value=98 Score=28.45 Aligned_cols=51 Identities=14% Similarity=0.340 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
..++..|...+..|+.+...++.++. .+....-.+..+++.++.+++....
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~---~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELA---SAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333 3334444455555555555544443
No 233
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=68.18 E-value=44 Score=35.74 Aligned_cols=81 Identities=28% Similarity=0.384 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHH----------HHHHHHHHhHHH
Q 046111 223 RNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEV----------EVVELKRKNKEL 292 (520)
Q Consensus 223 r~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~----------Ev~ELRr~Nk~L 292 (520)
.+++-+|.+||..-.+.+|===-+-+|+| .|+||=.+.|++||. -|..-+|...+|
T Consensus 6 QN~N~EL~kQiEIcqEENkiLdK~hRQKV--------------~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~el 71 (351)
T PF07058_consen 6 QNQNQELMKQIEICQEENKILDKMHRQKV--------------LEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQEL 71 (351)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45556666666555555543223334444 345666666777764 577889999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCc
Q 046111 293 QIEKRELLVKLDAAESKIASLSNMT 317 (520)
Q Consensus 293 Q~EK~eL~~kL~~AE~~~~~lsnv~ 317 (520)
+.||+.|-+-|.-|.-.+.++..+.
T Consensus 72 neEkrtLeRELARaKV~aNRVA~vv 96 (351)
T PF07058_consen 72 NEEKRTLERELARAKVSANRVATVV 96 (351)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 9999999999998887776666554
No 234
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=67.78 E-value=44 Score=30.93 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
.+|.+++.....++..+...+..+......|+.. .......++.+|.+...|+.++-..+...- .++.+=..|
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~---~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e----ilr~~g~~l 105 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKH---DLETSARLEEARRRHQELSHRLLRVLRKQE----ILRNRGYAL 105 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCC
Confidence 3566666666777777777777777777766333 555666788888888888877766654432 444443444
Q ss_pred hHHHHHHh
Q 046111 255 QAKEEEAI 262 (520)
Q Consensus 255 q~~Eee~~ 262 (520)
...|++..
T Consensus 106 ~~eEe~L~ 113 (141)
T PF13874_consen 106 SPEEEELR 113 (141)
T ss_dssp --------
T ss_pred CHHHHHHH
Confidence 44544433
No 235
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.77 E-value=69 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
+.+||.++.+++-..++|.-||.-|
T Consensus 158 leele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888877
No 236
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.57 E-value=2.3e+02 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 281 EVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
.+.+++.....++.|..++..+|..+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555555556666666666555543
No 237
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=67.55 E-value=47 Score=30.92 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----chhhhhH----HHHHHHHHh
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYG----LKEQESD----IVELQRQLK 182 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~----LKEQEa~----v~ELe~~L~ 182 (520)
.+.||..|..-|.+|.---..=--.|-+||. |+||..+ |..||++|.
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4668888888888887554444445566666 8998876 455777765
No 238
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.22 E-value=2.8e+02 Score=33.27 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=73.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH-----HHhhhcchhhhhHHHHHHHHHhhhhhHH-------HHHHHHHHHHHH
Q 046111 137 ARELERLRSLV----LELQEREVKLEGE-----LLEYYGLKEQESDIVELQRQLKIKTVEI-------DMLNITINSLQA 200 (520)
Q Consensus 137 ~~EI~~Lr~lV----eeLqERE~~LE~e-----LLEy~~LKEQEa~v~ELe~~L~~k~~Ei-------~~L~~kI~sLEs 200 (520)
..|..+||+.+ +.|+|+|..-+.- -+|...|+ +.-+-|++||..-.... +.|-+.|+++..
T Consensus 393 rsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLq---SlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~ 469 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQ---SLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKE 469 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Confidence 44555555444 4566666654111 22333332 22344555555444443 445678888889
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHH
Q 046111 201 ERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEV 280 (520)
Q Consensus 201 En~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~ 280 (520)
||+||...+.+-..- |-.-|..+..=--+|+.+.+++..+...+|=++..-+... .++. -.|+-=+.
T Consensus 470 Enk~~~~~~~ekd~~---l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN-~iL~---------itlrQrDa 536 (861)
T PF15254_consen 470 ENKRLRKMFQEKDQE---LLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN-QILG---------ITLRQRDA 536 (861)
T ss_pred HHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-hHhh---------hHHHHHHH
Confidence 999988776654322 1122222222233444455555444444333322211111 1111 12344456
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 046111 281 EVVELKRKNKELQIEKRELLV 301 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~ 301 (520)
||.-||-.+..||.-...|..
T Consensus 537 Ei~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 777788778888877766643
No 239
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.95 E-value=2.2e+02 Score=32.11 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHhHHHH
Q 046111 288 KNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 288 ~Nk~LQ~EK~eL~~kL~~A 306 (520)
..-+||+|-|+|..-|++-
T Consensus 436 ~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 436 KITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHhHheehhhh
Confidence 3456788888887777643
No 240
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=66.46 E-value=41 Score=35.97 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 213 SYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
.+.+.=|-.=|.|||.||++|.....
T Consensus 183 ~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 183 AKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 33344455667899999988865443
No 241
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.25 E-value=98 Score=30.23 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=20.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111 211 QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ 250 (520)
Q Consensus 211 e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~ 250 (520)
+-..+.++|+..+.+++.|++++..-....-+.+..+++.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3344555555566666666666654444444444444433
No 242
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.19 E-value=81 Score=32.03 Aligned_cols=31 Identities=39% Similarity=0.432 Sum_probs=13.8
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhHHHHHHHH
Q 046111 267 ELEKKLKSVKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 267 E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
+++++-+.++..+..+.+|+..-.+++.|-.
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 3444444444444444444444444444333
No 243
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=65.62 E-value=89 Score=36.91 Aligned_cols=45 Identities=33% Similarity=0.463 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHH----HHHHHHHH
Q 046111 297 RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDD----LLKQVEGL 346 (520)
Q Consensus 297 ~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEd----L~kqVEqL 346 (520)
.+|+-+|.+||..|+-|.-...+. --|+..||-+||= |.+-|++|
T Consensus 641 ~eL~~ql~~a~~t~a~l~~~~~~~-----~gei~alrl~~eigpg~l~dav~rl 689 (828)
T PF04094_consen 641 AELVSQLAAAQSTLADLQRLVQDQ-----AGEIAALRLTNEIGPGQLSDAVSRL 689 (828)
T ss_pred hhHhhhhHHHHHHHHHHHHhhhhh-----hhhHHHHHhhcccCcchhhhHHHHH
Confidence 489999999999887666554333 2478899999985 77777766
No 244
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.31 E-value=6.7 Score=42.03 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhccc
Q 046111 326 REEVNNLRHANDDLLKQVEGLQMNRF 351 (520)
Q Consensus 326 ~eE~~~LR~~NEdL~kqVEqLq~dR~ 351 (520)
++|-.+||.+|++|..+||+|..+|.
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555554
No 245
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.04 E-value=83 Score=26.39 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhHHhHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE----QIAQSSYVKKELEVARNKIKE 228 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~----qv~e~~~v~~ELe~ar~Kir~ 228 (520)
++.+..|+++|...+-.+.........|..|+..... ...++..++.|+++.+.+++.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777654333 333444444444444444433
No 246
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.92 E-value=1.4e+02 Score=31.09 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH---
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK--- 216 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~--- 216 (520)
+.-|...|..++.+=...+.+|.+|.. ...+...+.+ .......|..|+.+-..++.++++....-
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~----~~~~~d~~~~-------~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~ 240 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQI----KNKVFDPKAQ-------SSAQLSLISTLEGELIRVQAQLAQLRSITPEQ 240 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 445555555555555555555555543 1112222222 22233345555555555555555433221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 046111 217 -KELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 217 -~ELe~ar~Kir~Lqkk~~~~a 237 (520)
=++-.++.++..|+++++.+.
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~ 262 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQR 262 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 123345555666666555443
No 247
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.37 E-value=1.4e+02 Score=34.92 Aligned_cols=109 Identities=27% Similarity=0.326 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDV 266 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~ 266 (520)
+-+.+..++..|+-..+.|+=||. -+.++.++-..||+.|.-=|..-.++--+-=.+|+|+.....+-|..
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvs---vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETq------ 175 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVS---VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQ------ 175 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHH---HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHH------
Confidence 344566666777777776665554 34566677778888887666655555444445666665554333321
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhh
Q 046111 267 ELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIAS 312 (520)
Q Consensus 267 E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~ 312 (520)
| =+|..||-+|+=..-.|+.|++|--.|+-.+|.-+-.
T Consensus 176 ----K----lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 176 ----K----LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred ----H----hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 1 2455566666666666666666655555555544433
No 248
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.32 E-value=32 Score=31.03 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELE 220 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe 220 (520)
.+..|+.+|..-..+|..|+..|..|-+||.+|+-+-..+.....+++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999999999999999999998876666555555443
No 249
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=63.86 E-value=27 Score=31.35 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 213 SYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
+-++.+|..++..-.+|.|+|-..-.+++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~ 33 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQ 33 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888887777776653
No 250
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.59 E-value=1.1e+02 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
..+...+..++..+..+...|..++.++..+.++|+...
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~ 47 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445556666777777777777777777777777776653
No 251
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.55 E-value=3.7e+02 Score=33.37 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHHHH
Q 046111 294 IEKRELLVKLDAAESKI 310 (520)
Q Consensus 294 ~EK~eL~~kL~~AE~~~ 310 (520)
..|+.|+.+|..+-.++
T Consensus 265 ~~N~~Ls~~L~~~t~~~ 281 (1109)
T PRK10929 265 KINRELSQALNQQAQRM 281 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444433
No 252
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=63.49 E-value=18 Score=39.74 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 168 KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA---QSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 168 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~---e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
...-++|+||+.++.+-+..-..... +..|+.....++..+. ........++.++..++.+++.++..-+
T Consensus 318 WrT~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn 390 (448)
T PF05761_consen 318 WRTAAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKELFN 390 (448)
T ss_dssp SEEEEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred eEEEEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44578999999999988777665555 8888888888888877 7777777888888888888777765443
No 253
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.14 E-value=2.1e+02 Score=31.48 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 188 IDMLNITINSLQAERKKLQEQI-AQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv-~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
+..+......|+..-.+|++++ .++.-+..-|+..|-+...|..+|.-..+-...+|..|||.++.++++
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3334444455555555555533 366777788888999999999999999999999999999998877654
No 254
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.04 E-value=1.7e+02 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=12.3
Q ss_pred HHHhhHHHHHHHHHHHhhhhHH
Q 046111 236 DANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 236 ~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
+...+..|+..|+.+|-.|+..
T Consensus 162 e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 162 ERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666554
No 255
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=62.99 E-value=52 Score=32.47 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
..+...+..++.+.+|++...........+++.++.++..++.++
T Consensus 74 ~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l 118 (322)
T TIGR01730 74 AAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADL 118 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHH
Confidence 333344555566666666666666667777777777666665554
No 256
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.53 E-value=2.8e+02 Score=31.60 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=22.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGL 167 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L 167 (520)
-....+++..++..+..++.+-..|+.++...=|-
T Consensus 225 ~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 225 YEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34445566777777777777777777766665553
No 257
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.45 E-value=1.6e+02 Score=28.93 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=28.5
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
..+..|...+.+|++...++.-.+..|.-|...|+++.
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~ 150 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRL 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777778888888888888753
No 258
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.28 E-value=94 Score=34.89 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 046111 2 IVRAGFLVAASIAAYAVKQ 20 (520)
Q Consensus 2 lvr~g~~va~s~a~~~~~~ 20 (520)
|+++.+++++-+++|+.-.
T Consensus 5 llk~L~~~v~~~~~~i~ik 23 (472)
T TIGR03752 5 LLKVLVIPVILVVVLIGIK 23 (472)
T ss_pred cceehHHHHHHHHHHhhee
Confidence 5677677766666665433
No 259
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.22 E-value=1.5e+02 Score=28.50 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
.+...|..+|..|+++|+.|+..+..+..-.. .....-..|+++......+-++-+..+++.|..
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~---rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSS---RLEEREAELKKEYNRLHERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788899999999999966655443322 222333445555555555555666666655544
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.09 E-value=78 Score=30.25 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=10.0
Q ss_pred hHHhHHHHHHHHHHHhHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQI 294 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~ 294 (520)
.+++-+.++..|+...+.|+.
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555444444
No 261
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=61.95 E-value=1.7e+02 Score=29.05 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
...|..|+.....-...-..=..+|...|. ..+.+|+.+|.-+..++..+...+..|..=...=..+-.++..+.
T Consensus 17 ~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~-----~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le 91 (206)
T PF14988_consen 17 EKKIEKLWKQYIQQLEEIQRERQELVSRYA-----KQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLE 91 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 556666666543333322222334455554 456778888888888888888888888765555556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046111 217 KELEVARNKIKELQRQIQLD 236 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~~~~ 236 (520)
+|+..++......-.+++..
T Consensus 92 ~e~~~~~~e~~~~l~~~~~q 111 (206)
T PF14988_consen 92 EELEKMRAEHAEKLQEAESQ 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777665554444444433
No 262
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.71 E-value=94 Score=35.31 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHH
Q 046111 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVE 284 (520)
Q Consensus 241 K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~E 284 (520)
+.++..++++|..|+... .+.-.++.+..+.+.+|-.++..
T Consensus 190 ~~~~~~yk~~v~~i~~~~---ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKD---IKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred chhHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777652 23444555555445544444444
No 263
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=61.59 E-value=2.3e+02 Score=30.31 Aligned_cols=189 Identities=22% Similarity=0.275 Sum_probs=101.1
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHH-HHhhhhhHHHH-------------H
Q 046111 126 NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQR-QLKIKTVEIDM-------------L 191 (520)
Q Consensus 126 ~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~-~L~~k~~Ei~~-------------L 191 (520)
..-|......+..|-..|.+-++.=++---+||+++--|+. -=-+++.+.+. +-.-...|..| +
T Consensus 58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rs--RLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm 135 (305)
T PF14915_consen 58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRS--RLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM 135 (305)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh
Confidence 33465556667778888888777666666778888766643 00233444432 22223333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-----------------HHHHhhHHHHHHHHHHHhhh
Q 046111 192 NITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ-----------------LDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 192 ~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~-----------------~~a~q~K~qi~~Lkq~V~~L 254 (520)
+-.|+.|...|.-|..+++ .|.+|+.-|..++. ++..|+..|+--++++.-.=
T Consensus 136 n~d~S~lkd~ne~LsQqLs----------kaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLS----------KAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred cchHHhHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345556665655554443 34444444444444 44444444443333332221
Q ss_pred hHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhh----cCCCc--hhHHHHHHHHH
Q 046111 255 QAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIAS----LSNMT--ESEKVAKAREE 328 (520)
Q Consensus 255 q~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~----lsnv~--e~~~Va~a~eE 328 (520)
+. | +...-+.-.-|.-...+||-||.=|-..|+.|..++.. +.|+- =.+||.+...+
T Consensus 206 ~~--------------k---v~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae 268 (305)
T PF14915_consen 206 QD--------------K---VNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE 268 (305)
T ss_pred HH--------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 1 22233344455666788888888888889998876643 22322 14566665555
Q ss_pred HHh----hhhhcHHHHHHH
Q 046111 329 VNN----LRHANDDLLKQV 343 (520)
Q Consensus 329 ~~~----LR~~NEdL~kqV 343 (520)
... |..-|..|.+.-
T Consensus 269 ~ekq~lllEErNKeL~ne~ 287 (305)
T PF14915_consen 269 SEKQVLLLEERNKELINEC 287 (305)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 554 666666666553
No 264
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.51 E-value=4e+02 Score=33.08 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=27.3
Q ss_pred HhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 272 LKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 272 l~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+.+..++|..+..++....++....+.|+.++.+.+.-.
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~ 439 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSY 439 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777778888888877777665433
No 265
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=61.25 E-value=2.2e+02 Score=29.96 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=63.2
Q ss_pred HHHhhHHHHHHHHH-------HHhhhhHHHHHHh-------hhhHHHH----HHHhhHHhHHHHHHHHHHHhHHHHHHHH
Q 046111 236 DANQTKGQLLLLKQ-------QVSGLQAKEEEAI-------KKDVELE----KKLKSVKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 236 ~a~q~K~qi~~Lkq-------~V~~Lq~~Eee~~-------~~d~E~E----kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
.+.+..++...+++ +|..|...|.+.. .+-.+++ +-......+-.|+..|...++.|..|+.
T Consensus 182 ~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~ 261 (309)
T PF09728_consen 182 EAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQ 261 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666 7777777764431 1122233 3333455567899999999999999999
Q ss_pred HHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 298 ELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 298 eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
.+..|-+.+...+ -+|+ +|...+...-+.+.+++++|.+
T Consensus 262 ~~k~k~e~~n~~l--------~~m~----eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 262 TWKSKWEKSNKAL--------IEMA----EERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHhHHH--------HHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999775433 2333 3444444555556666666643
No 266
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.16 E-value=74 Score=31.87 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 233 IQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 233 ~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
.-.+....+..|.+|.+||.+|+.-
T Consensus 158 ~~~~l~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 158 SGKNLKSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677789999999999998765
No 267
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.16 E-value=1e+02 Score=26.11 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 046111 239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDA 305 (520)
Q Consensus 239 q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~ 305 (520)
++-..|..|+..|..|+.+... |..+-.+|+..|.+|+.+......||++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~-----------------L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNE-----------------LKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555554322 3345556666666666665555555543
No 268
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.56 E-value=1.6e+02 Score=28.05 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
.++.+-++---.|+.+--.|+.+|--.- .+++..+.+.|| ...+|..|.-.|..+-++..+|..++.-+..
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q--~~~e~~~~daEn----~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQ--ENKECLILDAEN----SKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH--HhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555553221 123333443333 4777888888888888888887776665543
No 269
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.56 E-value=3.5e+02 Score=32.05 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=71.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHH------HHHHHHhh-------hcchhhhhHHHHHHHHHhhhhhHHH---HH
Q 046111 128 VYETEMADNARELERLRSLVLELQEREVK------LEGELLEY-------YGLKEQESDIVELQRQLKIKTVEID---ML 191 (520)
Q Consensus 128 ~~~~~~~~~~~EI~~Lr~lVeeLqERE~~------LE~eLLEy-------~~LKEQEa~v~ELe~~L~~k~~Ei~---~L 191 (520)
.|.........+...++.....|++|-.. ++-+|... ..+++|.....+|+.-+.--+.++. .-
T Consensus 194 e~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~ 273 (716)
T KOG4593|consen 194 ELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLREN 273 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666655666666666555432 23344444 2346777777888888777777777 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 192 NITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 192 ~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
...+.-|++|+++|+..+.+...+...+.-+--.+-.|+-+++
T Consensus 274 ~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 274 RETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6788889999999999988888887777766666666666555
No 270
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.52 E-value=3.1e+02 Score=31.52 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 140 LERLRSLVLELQEREVKLEGELLEY------YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy------~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
.+.|+.-+..+.+.-..|..+-.-| |.-|||.. +-.+.++|.-.|+.+..+...|.++=.|+.|++++ ..
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~-y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee---~s 236 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQL-YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEE---NS 236 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 5556666666666555555543332 22233333 23445555555565555555555555555555443 34
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046111 214 YVKKELEVARNKIKELQR 231 (520)
Q Consensus 214 ~v~~ELe~ar~Kir~Lqk 231 (520)
++..+|.-++.|++.+.-
T Consensus 237 kLlsql~d~qkk~k~~~~ 254 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRH 254 (596)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 555666666666665543
No 271
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=60.23 E-value=2e+02 Score=30.83 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHh
Q 046111 196 NSLQAERKKLQEQIAQSSYVKKELEVARNKIKEL-QRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 196 ~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~L-qkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
..|+.+-.-+.+--++...++.+|+.+|....+| +.+++....+.++|=..|=+.|.
T Consensus 6 q~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~ 63 (324)
T PF12126_consen 6 QALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVE 63 (324)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888899999999999888776 34455555544444444434443
No 272
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.11 E-value=62 Score=33.47 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=30.6
Q ss_pred Hhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 162 LEYYG-LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 162 LEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
.++++ |.|....-.+|-.+|....+++..++.++.+|+.||.+|.+.+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 44444555566666666677777777777777777777766543
No 273
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.93 E-value=72 Score=33.21 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 228 ELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 228 ~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
.-++++....-.-|.+-..||.+|+.--+.. +|--+..+||.+|++|--.|..||.|+.-|
T Consensus 56 rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRD-----------rKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 56 RKRRRLDHLSWEEKVQRRKLKNRVAAQTARD-----------RKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHhhcccCHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888889999998744432 444566778888887777777777777655
No 274
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.88 E-value=2e+02 Score=28.96 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+++-+.-+.|||..+ +...+.....-|..|+.-+
T Consensus 129 l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL 162 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLL 162 (264)
T ss_pred HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHH
Confidence 355555567777775 6666666666777776533
No 275
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.77 E-value=2.4e+02 Score=29.98 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVK---KELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~---~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d 265 (520)
..+..+|.-|+.+.+.-+.+......+. +|+..-|.+-+.++.+|+..++++-+--.-+-.-......--.++-.-+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776666555555 7777778888888888888888874433222222222222222222334
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111 266 VELEKKLKSVKDLEVEVVELKRKNKELQIE 295 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E 295 (520)
.++......+..+-.++..++....+|+..
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333333
No 276
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.57 E-value=18 Score=40.24 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
....+..+|+.|++|+.+|++|+
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455677777778887777776
No 277
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=59.32 E-value=1.7e+02 Score=28.22 Aligned_cols=82 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHH----HHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111 194 TINSLQAERKKLQEQIAQSSYVKKEL----EVARNKIKELQRQI----QLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265 (520)
Q Consensus 194 kI~sLEsEn~RL~~qv~e~~~v~~EL----e~ar~Kir~Lqkk~----~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d 265 (520)
....|+.|-..+..++.+.-.-+..| -.||.++.+.-+-+ ..+.+.+=++..-++-++..++.+|.....+-
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333 24556666666665 45555555666666666666666666655555
Q ss_pred HHHHHHHhhH
Q 046111 266 VELEKKLKSV 275 (520)
Q Consensus 266 ~E~EkKl~~l 275 (520)
+++|.++..+
T Consensus 108 D~LErrl~~l 117 (159)
T PF05384_consen 108 DELERRLRNL 117 (159)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 278
>smart00338 BRLZ basic region leucin zipper.
Probab=59.00 E-value=39 Score=27.04 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=25.2
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
++|...+.+||.+|..|...|.+|+.+...|...+.
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666788888888888877777777766644443
No 279
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.85 E-value=2.5e+02 Score=29.81 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ------EQIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~------~qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
......|+.+|..-..++.....++...+.+|.-+. -....+..+..++..++.+...++.+.
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKE 238 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777666664331 112233344445555555544444443
No 280
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.71 E-value=81 Score=26.83 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=28.9
Q ss_pred chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 167 LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL-----QEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 167 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL-----~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
||||+..+-.|.++==- |.++|-.|+.....+ ++-+.+...+.-+++..+..+..+++.|.
T Consensus 2 lrEqe~~i~~L~KENF~-------LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFN-------LKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777766655322 334444444433322 23333333344444444444444444444
No 281
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.52 E-value=2.1e+02 Score=28.94 Aligned_cols=122 Identities=21% Similarity=0.258 Sum_probs=70.1
Q ss_pred HHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 160 ELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ 239 (520)
Q Consensus 160 eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q 239 (520)
.+|+|| +++.+..+.++...+.--.+.-..|.+++..++....+++.++..-... =-...+++
T Consensus 27 ~~l~Q~-ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~----------------g~E~LAr~ 89 (225)
T COG1842 27 KMLEQA-IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA----------------GNEDLARE 89 (225)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHH
Confidence 556655 3666667777777777777777777777777777777777654332211 11344455
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 240 TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 240 ~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
+-+.+..|.+.+.+++..-.... ..+..|+..+..|.....++...+..|..+..+|++
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~----------~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA 148 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAE----------EQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKA 148 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544433221 223445555555555555555666666666666665
No 282
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.04 E-value=46 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
..|+..+..+....+.|......+..++...+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555544443
No 283
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=57.86 E-value=2e+02 Score=28.50 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHH---------HhhhhHHHHHHhhhh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQ---------VSGLQAKEEEAIKKD 265 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~---------V~~Lq~~Eee~~~~d 265 (520)
...+.+.+.+.+..-.....+.+..+.+++.+++.|. ......+++|..++.. -..+..-+.....-.
T Consensus 12 ~~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~ 91 (240)
T PF12795_consen 12 DEPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQ 91 (240)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666665 2333334444444332 001111112222223
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhc
Q 046111 266 VELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASL 313 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~l 313 (520)
..+..--..+..+...+.++.-.-.+++..-.+...+++....++...
T Consensus 92 ~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 92 AQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333344566666777777777777777777777777777766554
No 284
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.73 E-value=51 Score=33.39 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHhhhhhcHHHHHHHHH
Q 046111 326 REEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 326 ~eE~~~LR~~NEdL~kqVEq 345 (520)
..|+++|-..|..|.+||+.
T Consensus 192 ~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 45667776666677778763
No 285
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.22 E-value=1.2e+02 Score=25.63 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+..-|.-||..+++++.+..+|..+++.++..+
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666555444
No 286
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.82 E-value=1.2e+02 Score=26.32 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ 221 (520)
..||.-+.-.-..|..|.+.|+-|-+.|..|..++.+....++.|+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 34555555566678888889999999998888888766666555443
No 287
>PRK12705 hypothetical protein; Provisional
Probab=55.46 E-value=3.6e+02 Score=30.62 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046111 220 EVARNKIKELQRQIQLDANQTKGQLLLL 247 (520)
Q Consensus 220 e~ar~Kir~Lqkk~~~~a~q~K~qi~~L 247 (520)
-.||.++..++.++..+.++.+.++...
T Consensus 55 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 55 LEAKELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555433
No 288
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.34 E-value=98 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=18.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 046111 205 LQEQIAQSSYVKKELEVARNKIKELQRQIQL 235 (520)
Q Consensus 205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~ 235 (520)
|++++...-.+.+||-.+|+-+-.+..+++-
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666665555543
No 289
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=54.93 E-value=12 Score=29.76 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.0
Q ss_pred hHHhHHHHHHHHHHHhHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQ 293 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ 293 (520)
++.+||.||.-||+.|++|=
T Consensus 19 rv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eHHHHHHHHHHHHHHhHHHH
Confidence 47899999999999999984
No 290
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=54.85 E-value=2.1e+02 Score=27.88 Aligned_cols=78 Identities=26% Similarity=0.324 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHH
Q 046111 192 NITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVE 267 (520)
Q Consensus 192 ~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E 267 (520)
....+.++++.+||...-.++. -+++|++..|.+|....++++-...
T Consensus 55 q~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~----------------------------- 105 (159)
T PF04949_consen 55 QAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQ----------------------------- 105 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHH-----------------------------
Confidence 3455666777777664333332 2456666666666666665543221
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
.++.=|.|..+--.+-.+.+.||..|+-+|-
T Consensus 106 ------~cqKKEkEykealea~nEknkeK~~Lv~~L~ 136 (159)
T PF04949_consen 106 ------SCQKKEKEYKEALEAFNEKNKEKAQLVTRLM 136 (159)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344444555556677888888888876
No 291
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.80 E-value=1.9e+02 Score=27.25 Aligned_cols=64 Identities=33% Similarity=0.398 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
..-+..|..-+..++++=..+..++.....- ...+...+.....+++.+...+..+..+-..|.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKED------LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544331 122224444445555555555555555555555
No 292
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=54.70 E-value=1.1e+02 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
...|+.|-.....|+.||.-|.++++.. ..+.+..+.||.+|..|=.+++
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788888888999999888876654 4556666777777777655554
No 293
>PF13514 AAA_27: AAA domain
Probab=54.61 E-value=4.8e+02 Score=31.80 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN 315 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn 315 (520)
...|+.++.++.....+|+.+..++...+..++..+..+..
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666777777777777777777777777777776655544
No 294
>smart00340 HALZ homeobox associated leucin zipper.
Probab=54.60 E-value=24 Score=27.61 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
+.-+.|++=-++|-.||.||+.++.++.++.
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788889999999999999999887653
No 295
>PLN02939 transferase, transferring glycosyl groups
Probab=54.57 E-value=4.9e+02 Score=31.98 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCchhH----------HHHHH---HHHHHhhhhhcHHHHHHHHHHhh
Q 046111 291 ELQIEKRELLVKLDAAESKIASLSNMTESE----------KVAKA---REEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 291 ~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~----------~Va~a---~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
-|+.--++|-.|+.+|+..+..++.+--+- +..++ -+.+-..-+.|.||.++|..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (977)
T PLN02939 268 LLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEA 338 (977)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 344444556667777777766666653222 12222 12233344668888888887653
No 296
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.43 E-value=4e+02 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcccchhhHHH
Q 046111 339 LLKQVEGLQMNRFGEVEELV 358 (520)
Q Consensus 339 L~kqVEqLq~dR~seVEELV 358 (520)
+|.-.+..--.|++.+.+.+
T Consensus 176 ~c~~fQ~~Ee~rl~~lk~~l 195 (611)
T KOG2398|consen 176 LCLKFQEIEESRLSFLKEEL 195 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 297
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=54.36 E-value=2e+02 Score=27.26 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-----HHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHH
Q 046111 184 KTVEIDMLNITINSLQAERKKLQEQIAQSSYVK-----KELEVARNKIKELQRQIQL----------DANQTKGQLLLLK 248 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~-----~ELe~ar~Kir~Lqkk~~~----------~a~q~K~qi~~Lk 248 (520)
+..+|+.++.+...|+....+++.++....-+- -+++..+..+..|..||.. ....+-..+.-.|
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777665544332 2445555555555555531 1122222333333
Q ss_pred HHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 249 QQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 249 q~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++...+... ......++..+-..+..+..++..++.....+...+..|
T Consensus 84 eKl~~~~~~---~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 84 EKLHFLSEE---LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 222333444444445555555555555555555555554
No 298
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=54.17 E-value=37 Score=34.11 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 046111 194 TINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQ 232 (520)
Q Consensus 194 kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk 232 (520)
....+.+||++|+++++++..-..+++..+.++..|++-
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666655543
No 299
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.16 E-value=4.9e+02 Score=31.80 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=117.2
Q ss_pred chhhHHhhccccc-cCCCCcccchhhhhhhhhhh-------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q 046111 100 LPEFEDLLSGEIE-YQLPIDKFDEAEKNKVYETE-------MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQE 171 (520)
Q Consensus 100 lpef~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQE 171 (520)
.|++.+++..+.. .|.|+.--|. .+-.|... .+-....+..=|.++..++.+=..|+++|-+--.+.++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~sqkd~--~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~ 384 (980)
T KOG0980|consen 307 DPEPLDLFEAEPASDPPNASQKDP--RELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN 384 (980)
T ss_pred CCCCccccccCcccCCcccccCCh--hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5778888876644 2323321121 12223222 222344466667777777777778888887766554332
Q ss_pred h----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH---HHhh
Q 046111 172 S----DIVELQRQLKIKTVEIDMLNITINSLQAERKK----LQEQIAQSSYVKKELEVARNKIKELQRQIQLD---ANQT 240 (520)
Q Consensus 172 a----~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~R----L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~---a~q~ 240 (520)
. .++....+|.+...+.+.-...|+.++-.+-- .++...-|..++.+...+..|+...++|+... .-..
T Consensus 385 ~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~ 464 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDV 464 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2 23333444444444444444333443333322 22233334445555555666676666666422 2234
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh----HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCC
Q 046111 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNM 316 (520)
Q Consensus 241 K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~----l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv 316 (520)
..+...|-.+|..++.....+..+..+..+.+.. +..|-.++.+|.+...-+-.........|+....+--.+.
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~-- 542 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA-- 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH--
Confidence 5666677777777776665544444333333322 1122223334444433333334444444444432111100
Q ss_pred chhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHH
Q 046111 317 TESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358 (520)
Q Consensus 317 ~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELV 358 (520)
...+.+ ++|...+|.+ +.+-++||+-++-+.-|.-+
T Consensus 543 --~~~~~~-~~e~~~~~~e---~e~si~ql~l~~~~~~ea~~ 578 (980)
T KOG0980|consen 543 --AELVAR-EEEREALRLE---AERSINQLELDSSASTEAGI 578 (980)
T ss_pred --HHHHHH-HHHHHHHHHH---HHhhHHHhhcccccchHHHH
Confidence 112221 1223334433 23337788888776555544
No 300
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.61 E-value=2.2e+02 Score=27.61 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=27.7
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
..+..|...+.+|+....+++.++..|.-+..+|+++.
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777777777778888888888888777644
No 301
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=53.20 E-value=3.5e+02 Score=29.90 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKI 226 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki 226 (520)
-..|..||..-.+..-....=..-..-||.|.++|+.|+.=.-.-++..|.++.|+
T Consensus 117 rKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 117 RKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555444444333333334455677777777777665555555555555543
No 302
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.12 E-value=57 Score=26.96 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
..|.+||..|.-....|+.|+..|...+.+..+|+.++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666655555555444443
No 303
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.96 E-value=62 Score=25.85 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=25.3
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
++|...+..||..|..|...|..|..+...|...+.
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566788888888888888777777777644444
No 304
>PRK10698 phage shock protein PspA; Provisional
Probab=52.67 E-value=2.5e+02 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
++.--..+..|...+..|+....+....+..|.-|..+|+++.
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344667777788888888888888889999999988743
No 305
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.62 E-value=2.4e+02 Score=27.79 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHH--HhhhhhHHHHHHHH---HHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ--LKIKTVEIDMLNIT---INSLQAERKKLQEQIA 210 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~--L~~k~~Ei~~L~~k---I~sLEsEn~RL~~qv~ 210 (520)
....|...+..|-...-.+..++.++-++-. .+..++++ +.+...+=+.-..- ....+....+|+.++.
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~------~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~ 109 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEA------QVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELA 109 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888888888888888888888666543 33444433 33333333322222 2222333333333333
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 211 QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 211 e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.+...++.++.++..|+.++..- +++...+..+.+.+
T Consensus 110 ---~~~~~v~~l~~~l~~L~~ki~~~--k~k~~~l~ar~~~A 146 (219)
T TIGR02977 110 ---AVEETLAKLQEDIAKLQAKLAEA--RARQKALAIRHQAA 146 (219)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34444445556666666665543 33333333333333
No 306
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.31 E-value=1.7e+02 Score=32.24 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
..++..|+.+|..|+.+..++++++.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~ 95 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGD 95 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677666666666555443
No 307
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.27 E-value=1.7e+02 Score=25.82 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=54.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH----HhhhhHHHHHHHhhHHhHHHHHHHHH
Q 046111 211 QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEE----AIKKDVELEKKLKSVKDLEVEVVELK 286 (520)
Q Consensus 211 e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee----~~~~d~E~EkKl~~l~~LE~Ev~ELR 286 (520)
++..+...|...|..+..+...+......-+..-..|+..+..+...=.+ ..+-.-..+.-.......+.++..|+
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666665555555555555555544432111 00011111122222345666777777
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111 287 RKNKELQIEKRELLVKLDAAESKIASLSN 315 (520)
Q Consensus 287 r~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn 315 (520)
.....|+.++..+-.+|..-...-..|.+
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~ 116 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKKYEEFLEK 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666655544333333
No 308
>PRK00295 hypothetical protein; Provisional
Probab=52.05 E-value=89 Score=25.97 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
..+.+||-++.-....|+.|+..|...+.+..+|+.++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776667777777776666665555554433
No 309
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=51.71 E-value=2.6e+02 Score=27.96 Aligned_cols=139 Identities=22% Similarity=0.248 Sum_probs=66.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 046111 208 QIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKR 287 (520)
Q Consensus 208 qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr 287 (520)
-..++.....+++.+|.+++.--.+++.....+-..+..-|++-. ..|.|.|+-... ..-+.++..++-
T Consensus 91 ~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~----------~~c~e~Ekar~~-~~~~~~~~~~k~ 159 (234)
T cd07652 91 MSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYD----------SLADDLERVKTG-DPGKKLKFGLKG 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcc-CCCccccccccc
Confidence 334455566666666666666655555444444333333222222 233333322111 000000122222
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 046111 288 KNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACL 367 (520)
Q Consensus 288 ~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACL 367 (520)
...-.|+|+ ++..|.+.|.... -..| +.++.+|+.-. ...+..=+..+-+||.- ...||
T Consensus 160 ~~~~~~~Ee-~~~~K~~~A~~~Y--------~~~v----~~~n~~q~e~~------~~~~p~i~~~lq~li~e--~d~~l 218 (234)
T cd07652 160 NKSAAQHED-ELLRKVQAADQDY--------ASKV----NAAQALRQELL------SRHRPEAVKDLFDLILE--IDAAL 218 (234)
T ss_pred hhhHHHhHH-HHHHHHHHHHHHH--------HHHH----HHHHHHHHHHH------HHHhHHHHHHHHHHHHH--HhHHH
Confidence 222235555 7888888776533 1122 23444443221 12333334455566665 47899
Q ss_pred HHHHhhcCCCC
Q 046111 368 RYELRNYQAPA 378 (520)
Q Consensus 368 R~ELrn~~~p~ 378 (520)
+-+|.+|..|.
T Consensus 219 ~~~~~~~~~~~ 229 (234)
T cd07652 219 RLQYQKYALPN 229 (234)
T ss_pred HHHHHHHhhhh
Confidence 99999998874
No 310
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.40 E-value=1.5e+02 Score=25.91 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 233 IQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 233 ~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
+.....++-.-|.+|+-.|..|+.+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777777776666654
No 311
>PF15294 Leu_zip: Leucine zipper
Probab=51.39 E-value=3.2e+02 Score=28.86 Aligned_cols=140 Identities=25% Similarity=0.272 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHH--------HH---HHHHhhhcchhhhhHHHHHHHH-HhhhhhHHHHHHHHHHH----------
Q 046111 140 LERLRSLVLELQEREVK--------LE---GELLEYYGLKEQESDIVELQRQ-LKIKTVEIDMLNITINS---------- 197 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~--------LE---~eLLEy~~LKEQEa~v~ELe~~-L~~k~~Ei~~L~~kI~s---------- 197 (520)
++.|+..|+..-|-|.. |= .+.-+-.+|+.| ..+.+|||+ |....++.+.-...+..
T Consensus 39 ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~-~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~K 117 (278)
T PF15294_consen 39 LDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQ-TDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPK 117 (278)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccc
Confidence 66666666663333321 11 122334558888 788999988 44445555555555554
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ---TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS 274 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q---~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~ 274 (520)
|...+..- ....+..|+.+.+..+..|+.+++..-.+ +-.+-..|+.++..|+...-.. +.-..+-.+.+.
T Consensus 118 L~pl~e~g-----~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~-~~k~~~~~~~q~ 191 (278)
T PF15294_consen 118 LEPLNESG-----GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ-KGKKDLSFKAQD 191 (278)
T ss_pred cccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccccc
Confidence 55555441 12233444444444444444444433222 2333445566666666521111 000112235566
Q ss_pred HHhHHHHHHHHH
Q 046111 275 VKDLEVEVVELK 286 (520)
Q Consensus 275 l~~LE~Ev~ELR 286 (520)
+.+||..|..|+
T Consensus 192 l~dLE~k~a~lK 203 (278)
T PF15294_consen 192 LSDLENKMAALK 203 (278)
T ss_pred hhhHHHHHHHHH
Confidence 777888777765
No 312
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.38 E-value=5.7e+02 Score=31.77 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=33.5
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
-..++++++..+++|+..+.|.+-...++-.+.-++..+++.++.
T Consensus 423 ~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 423 LESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888888877777777777777777776653
No 313
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=51.10 E-value=2.5e+02 Score=27.51 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHh------hhh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLK------IKT--VEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~------~k~--~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
.=|..-+.+|.-|++++.....=+-+...|..+......-+..+. ... ..+..=+..|..|+.||.-|..-+
T Consensus 7 ~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~l 86 (181)
T PF05769_consen 7 QILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSL 86 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 335555666777777766666666666666655554433333321 100 112333566888999999888888
Q ss_pred HhHHhHHH
Q 046111 210 AQSSYVKK 217 (520)
Q Consensus 210 ~e~~~v~~ 217 (520)
.+|-.+.+
T Consensus 87 eEhq~ale 94 (181)
T PF05769_consen 87 EEHQSALE 94 (181)
T ss_pred HHHHHHHH
Confidence 88876654
No 314
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.99 E-value=98 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
-..+..++..|+++.+.+..++......
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 3444555555555555555555554443
No 315
>PRK11519 tyrosine kinase; Provisional
Probab=50.74 E-value=4.5e+02 Score=30.43 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERK 203 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~ 203 (520)
.+..|++||..-..+++.....+...+.+|.
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555555555555555554444443
No 316
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.43 E-value=3.1e+02 Score=31.38 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=39.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 211 QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 211 e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
+......||..+..+|..||..+.+-..-=+.||-++=++++.|.++
T Consensus 456 ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 456 EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33446677888899999999999988888899999999999998776
No 317
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.41 E-value=2.9e+02 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
=|..+...++.|..|...+.+++.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLr 56 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELR 56 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 318
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=50.39 E-value=44 Score=34.45 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHH
Q 046111 194 TINSLQAERKKLQEQIAQS-SYVKKELEVARNKIKELQR 231 (520)
Q Consensus 194 kI~sLEsEn~RL~~qv~e~-~~v~~ELe~ar~Kir~Lqk 231 (520)
....|++||++|+.++.++ ..+...++..+.+++.|++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888887776 3333333335555555444
No 319
>PRK11020 hypothetical protein; Provisional
Probab=50.24 E-value=47 Score=30.88 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111 302 KLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR 350 (520)
Q Consensus 302 kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR 350 (520)
|||.-..+.++.....+.++++....|.+. |.++|+.|+.-|
T Consensus 13 rLD~~~~Klaaa~~rgd~~~i~qf~~E~~~-------l~k~I~~lk~~~ 54 (118)
T PRK11020 13 RLDAIRHKLAAASLRGDAEKYAQFEKEKAT-------LEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 333333333333445677888887777776 888998887655
No 320
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.98 E-value=4.6e+02 Score=30.25 Aligned_cols=45 Identities=31% Similarity=0.248 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~ 180 (520)
...++..++...+++.+|.-.|+-++-|.-.+.=|.....+|+.+
T Consensus 169 ~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e 213 (557)
T COG0497 169 ARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEE 213 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 367788888888888888888888887776665555555555444
No 321
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.94 E-value=70 Score=25.63 Aligned_cols=28 Identities=32% Similarity=0.448 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
..++..+..++..++.+|..|+.++..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566666666665555554
No 322
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.94 E-value=45 Score=35.68 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=35.4
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHh
Q 046111 263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIA 311 (520)
Q Consensus 263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~ 311 (520)
.+-.++|. ++.+||..+.++......++.+...|..+|+..|.++-
T Consensus 144 ~Ri~e~Ee---ris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 144 SRIDELEE---RISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555553 46778889999999999998888888888888777654
No 323
>PRK04406 hypothetical protein; Provisional
Probab=49.83 E-value=82 Score=26.77 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
..+.+||-+|.-...-|+.|+..|...+.+..+|+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ 46 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444443
No 324
>PRK02793 phi X174 lysis protein; Provisional
Probab=49.72 E-value=87 Score=26.32 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
+..+.+||-+|.-...-|+.|+..|...+.+..+|+.++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555555554443
No 325
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=49.67 E-value=3.8e+02 Score=29.25 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHH--H
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVE--L 268 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E--~ 268 (520)
+...|+.+--.-..|..++..|+.--.||...=+|-.++=-+++.+.+.--..|..|-....++..+=+++-+.--. .
T Consensus 206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ 285 (391)
T KOG1850|consen 206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAE 285 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44556666666667778888888888888877777777777777777777777776666665555554332111100 1
Q ss_pred H--HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 269 E--KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 269 E--kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+ -+.+.+..|-..+.-|......||.+-.+|..++...++.+
T Consensus 286 ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v 329 (391)
T KOG1850|consen 286 EKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQV 329 (391)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccc
Confidence 1 12233555666777777788888888888888888777655
No 326
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.52 E-value=78 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKEL 219 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~EL 219 (520)
.+..|+.++..-..++..|+..|..|-+||.+|+-+-..+.....++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888899999999999999999998887666555555544
No 327
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=49.37 E-value=2.9e+02 Score=27.78 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=7.4
Q ss_pred hhhhhcHHHHHHHHH
Q 046111 331 NLRHANDDLLKQVEG 345 (520)
Q Consensus 331 ~LR~~NEdL~kqVEq 345 (520)
.-.+.|++|++--..
T Consensus 186 QK~kEn~ELtkICDe 200 (207)
T PF05010_consen 186 QKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555443
No 328
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.35 E-value=1.2e+02 Score=31.68 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
+..+.-.+..+..+..+++.. .....+..|+....+.+|.-.+++..+..++|..+..++..+..+
T Consensus 177 i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 177 ISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 333444444444444444433 334556666766666677777788888888888887777776554
No 329
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=48.69 E-value=87 Score=28.10 Aligned_cols=53 Identities=30% Similarity=0.407 Sum_probs=38.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhH-HHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 283 VELKRKNKELQIEKRELLVKL-DAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 283 ~ELRr~Nk~LQ~EK~eL~~kL-~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
.++.+...++..|..+|+..| +.| +.||+.++.+-..+...|..|.+++....
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEA------------N~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEA------------NKMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777778888777 433 67999999888888888877877766544
No 330
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.58 E-value=2.1e+02 Score=26.05 Aligned_cols=64 Identities=28% Similarity=0.309 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 238 NQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 238 ~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
.+-|+|...||.=|..=|++... -...+..|-+.|+.++.|+.=|--.|.+|...-..|---|+
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~---L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAE---LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666554444332 34456777778888888888777777776655555544444
No 331
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.56 E-value=1.1e+02 Score=33.39 Aligned_cols=25 Identities=40% Similarity=0.520 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
+-..+..++..|+.+.+.+..++..
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666655554
No 332
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.39 E-value=1.3e+02 Score=25.43 Aligned_cols=61 Identities=34% Similarity=0.373 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh-HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 242 GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS-VKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 242 ~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~-l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
++|..|...-..|-.++-. ...+-+||.. ++++|..+.+|+.....+..+...|..+|..+
T Consensus 12 e~Ia~L~eEGekLSk~el~----~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELK----LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444444321 2233344443 67777888888877777777777777776654
No 333
>PRK00846 hypothetical protein; Provisional
Probab=48.35 E-value=96 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
+..+.+||.+|.-...-|+.|+..|...+....+|+.++.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777777777777777777776666665555443
No 334
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=3.9e+02 Score=31.44 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH------------------HH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ------------------LD 236 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~------------------~~ 236 (520)
++.+...+-+-+-|..+..+-.++-...+.|++.+.=+--++.+-..|+..|+-+|.++. +.
T Consensus 388 ~~~~~~~~r~i~~~~~~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~ 467 (852)
T KOG4787|consen 388 PEMEKDMSKMIVTISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATK 467 (852)
T ss_pred hHhHhHHHHHHHHHHHHHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCC
Q 046111 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNM 316 (520)
Q Consensus 237 a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv 316 (520)
.+|+-.+-++|..++-++.-+..-.+....+..-|+ +.||.|+.==.....+||.|-..+ .
T Consensus 468 LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kI---K~LE~e~R~S~~Ls~~L~~ElE~~----------------~ 528 (852)
T KOG4787|consen 468 LEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKI---KILELEKRLSEKLAIDLVSELEGK----------------I 528 (852)
T ss_pred HHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHH---HHHHHHHHHHHHHHHHHHHHHHhh----------------c
Q ss_pred chhHHHHHHHHHHHhhhhhcHHHHHHH
Q 046111 317 TESEKVAKAREEVNNLRHANDDLLKQV 343 (520)
Q Consensus 317 ~e~~~Va~a~eE~~~LR~~NEdL~kqV 343 (520)
..-+-.+..-+....--.+.-.|+||+
T Consensus 529 ~~~~~~e~~~evL~~~~~~t~~l~Kq~ 555 (852)
T KOG4787|consen 529 PTIDEIEQCCEVLAAVETQTGRLCKQF 555 (852)
T ss_pred CcHhHHHHHHHHHHHHhhhHHHHHHHH
No 335
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.68 E-value=70 Score=32.58 Aligned_cols=42 Identities=38% Similarity=0.473 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQAP 377 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ELrn~~~p 377 (520)
++|+.--+.|...||++||.|-..||+++.+ ||||+-+--+-
T Consensus 108 sel~S~e~sEF~~lr~e~EklkndlEk~ks~-----------------lr~ei~~~~a~ 149 (220)
T KOG3156|consen 108 SELVSIERSEFANLRAENEKLKNDLEKLKSS-----------------LRHEISKTTAE 149 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcchh
Confidence 4455444678899999999999999999875 89999766543
No 336
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.65 E-value=1.8e+02 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 176 ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
+|+.+|..-+.++.....-|..||.....++.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555666666666666666555553
No 337
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.52 E-value=25 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=16.6
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 325 AREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 325 a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
++++...|+..|.+|..+|+.|+.+
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455566666677777777777765
No 338
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=47.45 E-value=4.5e+02 Score=29.45 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=8.3
Q ss_pred ccHHHHHHHHHHHHHHH
Q 046111 135 DNARELERLRSLVLELQ 151 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLq 151 (520)
|.-+.|..+|.-+..-+
T Consensus 78 di~~qlr~~rtel~~a~ 94 (499)
T COG4372 78 DIRPQLRALRTELGTAQ 94 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 339
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=47.32 E-value=4.2e+02 Score=29.82 Aligned_cols=49 Identities=27% Similarity=0.418 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHhHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ-IAQSSYVKKELE 220 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q-v~e~~~v~~ELe 220 (520)
..+-|||+.+.+|.+|.+|+..+..--.-|-++|+.- ++-..++.+|..
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYa 399 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYA 399 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4589999999999999999999999999999999863 344445555444
No 340
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=46.87 E-value=1.2e+02 Score=25.82 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 288 KNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 288 ~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
....|+.||-.|-.|+--.+.++....+-.-.++. .+.-.|+..++.|.++|..++
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~----keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQKLGPESIEELL----KENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655433332222222 233335555555666555544
No 341
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.54 E-value=3.2e+02 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 046111 170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKE 218 (520)
Q Consensus 170 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~E 218 (520)
-++.+..+++++..+..++..+..++.-+...|..+..=+.+|-++..+
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444455544444555555555555555555555555555555444
No 342
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.24 E-value=4.4e+02 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
++.-|+.|+.+...++.+..+......|++..+.+++...++++
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555554444444443
No 343
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=46.13 E-value=1.5e+02 Score=28.91 Aligned_cols=73 Identities=30% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 140 LERLRSLVLELQER--------EVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 140 I~~Lr~lVeeLqER--------E~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
.+.+-.+|++|-+| |..-..+|+||-.-=+=+..-.+....|+..-+||+.+..+++..|.||++....+.+
T Consensus 23 ~d~~~~lVe~lve~SdfY~~gvEfdw~~eFveyV~cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 23 NDTFIKLVEELVERSDFYSSGVEFDWKDEFVEYVDCVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 45566677777665 5666778888876544444444455556666777777877787777777776555544
Q ss_pred H
Q 046111 212 S 212 (520)
Q Consensus 212 ~ 212 (520)
.
T Consensus 103 ~ 103 (158)
T PF03112_consen 103 L 103 (158)
T ss_pred H
Confidence 4
No 344
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.03 E-value=6.9e+02 Score=31.17 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNIT 194 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~k 194 (520)
..+||.++.....++-.+...
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~ 124 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQ 124 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444333
No 345
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=45.98 E-value=1.3e+02 Score=34.16 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYG 166 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 166 (520)
++.|+.+|+.+|+...|+-.++..++-+|..
T Consensus 26 ~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~ 56 (604)
T KOG3564|consen 26 NEDEFIRLRKDFEDFEEKWKRTDAELGKYKD 56 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4889999999999999999999999999976
No 346
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.83 E-value=1.6e+02 Score=27.28 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHH
Q 046111 189 DMLNITINSLQAE--RKKLQEQIAQSSYVKKELEVARNKI 226 (520)
Q Consensus 189 ~~L~~kI~sLEsE--n~RL~~qv~e~~~v~~ELe~ar~Ki 226 (520)
+.+...|..++.. +..+...+.+ +..+|+.+...+
T Consensus 77 E~~~~~i~~~~~~~e~~~~a~~~~~---l~~~Le~ae~~~ 113 (139)
T PF13935_consen 77 ERAQQRIAELEQECENEDIALDVQK---LRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3355555555544 5555544433 333777777766
No 347
>PRK02119 hypothetical protein; Provisional
Probab=45.80 E-value=1.1e+02 Score=25.73 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
+..+.+||-+|.-....|+.|+..|...+.+..+|+.+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444433
No 348
>PRK12704 phosphodiesterase; Provisional
Probab=45.64 E-value=4.9e+02 Score=29.38 Aligned_cols=41 Identities=37% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 046111 247 LKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKR 287 (520)
Q Consensus 247 Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr 287 (520)
|.++...|+.++.+...+..+++.+.+.+.+++.++.++..
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555544444444444444444444444444433
No 349
>PRK04325 hypothetical protein; Provisional
Probab=45.64 E-value=1.1e+02 Score=25.87 Aligned_cols=37 Identities=38% Similarity=0.342 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
..+.+||.+|.-....|+.|+..|..-+.+..+|+.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666555555544443
No 350
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=45.25 E-value=2.6e+02 Score=31.58 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHhHHHHHH-HHHHHHhHHH
Q 046111 266 VELEKKLKSVKDLEVEVVELKRKNKELQIE-KRELLVKLDA 305 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E-K~eL~~kL~~ 305 (520)
..+++=|+.--++|+..-+-+|.|.+-|+. -.|-+.||.-
T Consensus 335 ~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 335 LALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 456777777778888888888877766643 2344445543
No 351
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.18 E-value=7.7e+02 Score=31.48 Aligned_cols=42 Identities=36% Similarity=0.502 Sum_probs=26.6
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 046111 325 AREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLR 368 (520)
Q Consensus 325 a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR 368 (520)
|++-+..||..-++|+-|- +-+++|..++ |++|++=--|-++
T Consensus 1687 ar~rAe~L~~eA~~Ll~~a-~~kl~~l~dL-e~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLLGQA-NEKLDRLKDL-ELEYLRNEQALED 1728 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHhhhhHHHHH
Confidence 5666777888777777664 3456666666 4677765444433
No 352
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=45.13 E-value=53 Score=25.61 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=23.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++|-..+.+|+.+|..|...|..|+.+...|
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667888888888888888887777666
No 353
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.98 E-value=3.2e+02 Score=30.21 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=4.2
Q ss_pred HHHHhHHH
Q 046111 298 ELLVKLDA 305 (520)
Q Consensus 298 eL~~kL~~ 305 (520)
.+.+.|+.
T Consensus 181 ~v~v~l~~ 188 (525)
T TIGR02231 181 TVLVRLEA 188 (525)
T ss_pred EEEEEEec
Confidence 45555554
No 354
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=44.87 E-value=2.3e+02 Score=25.35 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 046111 225 KIKELQRQIQ 234 (520)
Q Consensus 225 Kir~Lqkk~~ 234 (520)
++..|+.+-.
T Consensus 80 ~~~~l~~~w~ 89 (213)
T cd00176 80 RLEELNQRWE 89 (213)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 355
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.59 E-value=1.6e+02 Score=31.11 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 139 ELERLRSLVLELQEREVKLEGELLEYYGLKEQESD--IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 139 EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~--v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
-+..|+.-+.+++|+=.+ ++ ...|.|+=..-.=+|+.|..++..||+..-.|+.++.+ -.
T Consensus 78 s~r~lk~~l~evEekyrk---------------AMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e---K~ 139 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRK---------------AMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE---KI 139 (302)
T ss_pred cHHHHHHHHHHHHHHHHH---------------HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 455566667666665222 22 23455665566678889999999999888888887753 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111 217 KELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ 250 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~ 250 (520)
.+|++-|..+..|+.++.....+-++.=.+|.+.
T Consensus 140 ~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 140 RELERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5677888878777777777776666655555554
No 356
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=44.42 E-value=3.6e+02 Score=30.05 Aligned_cols=51 Identities=22% Similarity=0.025 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc---c-------hhhhhHHHHHHHHHhhhhhHHHH
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYG---L-------KEQESDIVELQRQLKIKTVEIDM 190 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~---L-------KEQEa~v~ELe~~L~~k~~Ei~~ 190 (520)
|...+.-|..-++|=..-...|+.|-. + .-+-..|..||.+|....+++..
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~ 304 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQ 304 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555542 1 11223345555555555555443
No 357
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.29 E-value=1.4e+02 Score=32.44 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
-..+..++..|+++.+.+..++..
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666665554
No 358
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.21 E-value=2.2e+02 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=8.2
Q ss_pred HHHHHHHHhhcc
Q 046111 339 LLKQVEGLQMNR 350 (520)
Q Consensus 339 L~kqVEqLq~dR 350 (520)
|-.||+.||.++
T Consensus 121 ldeqi~~lkes~ 132 (155)
T PF06810_consen 121 LDEQIKALKESD 132 (155)
T ss_pred HHHHHHHHHhcC
Confidence 667777777655
No 359
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.16 E-value=5.6e+02 Score=29.59 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhcHH---HHHHHHHHhhcccchhhHH-----HHHHHHHHHHHHHHhhcCCCCCCc
Q 046111 324 KAREEVNNLRHANDD---LLKQVEGLQMNRFGEVEEL-----VYLRWVNACLRYELRNYQAPAGKT 381 (520)
Q Consensus 324 ~a~eE~~~LR~~NEd---L~kqVEqLq~dR~seVEEL-----VYLRWVNACLR~ELrn~~~p~gk~ 381 (520)
++.+|++.|....++ |-+++..|+...-.--+.| -|..-+.+|+-.||....-+.+++
T Consensus 329 ~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~F 394 (557)
T COG0497 329 KIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKARF 394 (557)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 344555555444332 4444444444333333333 244456788888998877776655
No 360
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.08 E-value=3.8e+02 Score=28.21 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=47.7
Q ss_pred chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 167 LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ----SSYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 167 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e----~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
|++....|.+|+.+|..+..++..-....+.|-.+...=++.+.. ...-..+++.....+...+...+.+...+.-
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P 89 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEP 89 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665555444444333332211111111 1122233344455566666666666666666
Q ss_pred HHHHHHHHHhhhhHHHH
Q 046111 243 QLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 243 qi~~Lkq~V~~Lq~~Ee 259 (520)
.+..-..-|..|.....
T Consensus 90 ~L~~A~~al~~l~k~di 106 (344)
T PF12777_consen 90 ALEEAQEALKSLDKSDI 106 (344)
T ss_dssp HHHHHHHHHHCS-HHHH
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 66666666666666553
No 361
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.95 E-value=95 Score=26.90 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=18.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
++.....+.=|-.||.||+-.|..|+.|-.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 344445566666777777777766665543
No 362
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.53 E-value=92 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...+..|..++..|+.+|..|..++..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665544433
No 363
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.47 E-value=3e+02 Score=26.22 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHHHHh
Q 046111 275 VKDLEVEVVELKRKN 289 (520)
Q Consensus 275 l~~LE~Ev~ELRr~N 289 (520)
+.+|+..+..|+..+
T Consensus 118 ~~Gldeqi~~lkes~ 132 (155)
T PF06810_consen 118 LKGLDEQIKALKESD 132 (155)
T ss_pred cccHHHHHHHHHhcC
Confidence 455666665555444
No 364
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.96 E-value=1.6e+02 Score=24.75 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=31.0
Q ss_pred HhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 272 LKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 272 l~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+..+..|..|=.-||.....++.|.+.|..|.+.|-+++
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777778888888888888888888888888776
No 365
>PRK00736 hypothetical protein; Provisional
Probab=42.94 E-value=1.4e+02 Score=24.91 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
.+.+||-+|.-...-|+.|+..|..-+.+..+|+.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ 40 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRK 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665555544444443
No 366
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=42.87 E-value=1.9e+02 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 220 EVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 220 e~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
...+.++..|...++..+...+..|..|+..+.
T Consensus 41 ~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 41 SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777888888888888888888888777755
No 367
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.67 E-value=4.5e+02 Score=27.73 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=11.0
Q ss_pred CcchhhHHhhccccc
Q 046111 98 DILPEFEDLLSGEIE 112 (520)
Q Consensus 98 ~llpef~~l~~~~~~ 112 (520)
-+.|+|..+|.-=|+
T Consensus 93 ~Vk~S~~silq~If~ 107 (269)
T PF05278_consen 93 QVKPSQVSILQKIFE 107 (269)
T ss_pred EEcHhHHHHHHHHHH
Confidence 478999988885443
No 368
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=41.63 E-value=2.5e+02 Score=30.24 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
.-.|-.|..+|..|+.+...++.+ +..+.+.|.+|+.|+++||--|
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~e---L~~~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKE---LEITKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777665555544 4458888899999998887544
No 369
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.59 E-value=5.7e+02 Score=28.92 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHhhhhHHHHHHhhhhHHH
Q 046111 194 TINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLL-----KQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 194 kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~L-----kq~V~~Lq~~Eee~~~~d~E~ 268 (520)
+-.+|--+|..|++.-.++..++.+|-.|.+.+.-++. |-...+-+|.+...- ...|+.||+--.+- .+..
T Consensus 22 ~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ika-ia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~---~~~y 97 (542)
T KOG0993|consen 22 KEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKA-IATVSEPTKSEAVSAVVRQEEEEVASLQASQKSP---NPTY 97 (542)
T ss_pred hhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHH-HHHhcCcchHHHHHHHHHhhccccchhHHHhcCC---CccH
Confidence 34566677788888888888888888888877766543 444455555443222 12266666543221 1111
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
+ -+....||+|--.+......+..|...|-..|+-++-+. ++ +++| .+|+++..+||.--=-..|+|+.|.+
T Consensus 98 e--~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~----~L-enem-~ka~Ed~eKlrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 98 E--CQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQL----DL-ENEM-DKAKEDEEKLRELVTPMEKEINELKK 169 (542)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh----hh-HHHH-HHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 1 112334455544444444444555555544444433211 11 2233 45667777777655556677776654
Q ss_pred cccchhhHHH
Q 046111 349 NRFGEVEELV 358 (520)
Q Consensus 349 dR~seVEELV 358 (520)
-.+..|++|
T Consensus 170 -kl~~aE~~i 178 (542)
T KOG0993|consen 170 -KLAKAEQRI 178 (542)
T ss_pred -HHHhHHHHH
Confidence 233444443
No 370
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.53 E-value=1.3e+02 Score=35.00 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 046111 184 KTVEIDMLNITINSLQAERK 203 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~ 203 (520)
-+.+|..++.+|+.|+.+..
T Consensus 105 l~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 35566666666666654433
No 371
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.49 E-value=1.9e+02 Score=26.45 Aligned_cols=59 Identities=32% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
|=..+--|+++..+=|.-+..|...|-.-++ -+.+..+|++.|---|..|.|-|+.||.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~------------~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQ------------ALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666677666665444 3356788999999999999999999874
No 372
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=41.43 E-value=1.6e+02 Score=25.59 Aligned_cols=29 Identities=41% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAER 202 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn 202 (520)
..+|.+.|..+..||+.|+.-|++|+..-
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999987653
No 373
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.30 E-value=1.5e+02 Score=32.17 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=47.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
..+..++..|+..++.++++=.+|+..+-.+..++.+...-.+...++..-......|..++..|+.+...|++++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888888888888888888776666655544433344444444444444555555555555555555554443
No 374
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=41.28 E-value=2.6e+02 Score=25.01 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 220 EVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 220 e~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
...+.++..+...+...++..+..|..|+..+..
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~ 73 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESNEQ 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766554
No 375
>smart00338 BRLZ basic region leucin zipper.
Probab=41.27 E-value=89 Score=24.96 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
..+..|..++..|+.+|..|..++..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 376
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=41.02 E-value=2.4e+02 Score=30.64 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hHHh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA--QSSY 214 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~--e~~~ 214 (520)
..-+..|++.|..|.---.+||.+|+ .+|..-..+ -..+..--.+++.|.+||+.... ...+
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~-------------q~Ee~hq~k---Krk~~estdsf~~eLKr~c~~kvevd~eK 283 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELL-------------QIEERHQEK---KRKFLESTDSFNNELKRLCGLKVEVDMEK 283 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH---HHHHHhccHHHHHHHHHhcCCcccccHHH
Confidence 34578899999999999999999998 122222211 22344455678888888885433 3345
Q ss_pred HHHHHHHHHHHHH
Q 046111 215 VKKELEVARNKIK 227 (520)
Q Consensus 215 v~~ELe~ar~Kir 227 (520)
++.++..|-.+.+
T Consensus 284 ~~~~i~q~eeq~r 296 (410)
T KOG4715|consen 284 MAAEIAQAEEQAR 296 (410)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444443
No 377
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.62 E-value=60 Score=33.20 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
+.|||.+|.....+|..|..+|++|+++|-+|=+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666667777777777777766553
No 378
>PF13166 AAA_13: AAA domain
Probab=40.56 E-value=5.9e+02 Score=28.82 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
+......+...+..|...+..+...=..-......-..+..-...+..+...+..-+..|+..+..|..+..+...+...
T Consensus 320 ~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~ 399 (712)
T PF13166_consen 320 FEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDK 399 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHh--HHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhH
Q 046111 209 IAQSSY--VKKELEVARNKIKELQ---RQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSV 275 (520)
Q Consensus 209 v~e~~~--v~~ELe~ar~Kir~Lq---kk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l 275 (520)
+..+.. ....+.....++..++ ..+.......+..+..++.++..|+..-.....-...+.+.|+.+
T Consensus 400 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 400 LWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 379
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.28 E-value=21 Score=31.47 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAE 307 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE 307 (520)
..|..++..|.+.|..|+.+..+|..+|..++
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444555555555555555555555444443
No 380
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.17 E-value=9.1e+02 Score=30.90 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQE-------QIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~-------qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
..-|..-...|...+++..--+. ++.++...+++|..-..++-.--+.+.+.+.-++++.+..+|....||..
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~ 1669 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKY 1669 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555443333 33333444444433333333334444455555555555555555544443
No 381
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.01 E-value=1.4e+02 Score=29.79 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIA------QSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~------e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
+.+.-.+..++..|+.+-.||.+.+. +...+..+|...+..|..++.++
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666543 34444444444444444444333
No 382
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=40.01 E-value=7.8e+02 Score=30.04 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046111 138 RELERLRSLVLELQEREVKLEGE 160 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~e 160 (520)
.++..+...+..+......+..+
T Consensus 530 ~~l~~~~~~~~~~~~~~~~~~~~ 552 (1047)
T PRK10246 530 SRLDALEKEVKKLGEEGAALRGQ 552 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554443
No 383
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=39.99 E-value=6e+02 Score=28.75 Aligned_cols=102 Identities=25% Similarity=0.185 Sum_probs=66.9
Q ss_pred HHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 177 LQRQLKIKTVEIDM-LNITINSLQAERKKLQE-QIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 177 Le~~L~~k~~Ei~~-L~~kI~sLEsEn~RL~~-qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
++-.=.+-+...+. ++.-+.+||---+.|.. |+..+..++..=-++-.=+..||+|.+....=..-+-++++.++..+
T Consensus 386 ~~l~pail~~~tee~~~t~~~slE~iiq~ls~~qlqhlf~i~~sP~yvd~v~e~Lqqk~k~~~~l~l~~elm~q~q~eal 465 (505)
T KOG2607|consen 386 LYLVPAILNQRTEELRNTDTLSLEHIIQALSPMQLQHLFPITISPMYVDIVIELLQQKKKRDLILILNSELMLQRQVEAL 465 (505)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhccCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444443 66667888888888875 77777777777677777778888887766555555555555555554
Q ss_pred hHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHH
Q 046111 255 QAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296 (520)
Q Consensus 255 q~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK 296 (520)
+.+ +.+|++..||=....+||.+.
T Consensus 466 Ee~------------------~~levkL~elle~tr~lqk~I 489 (505)
T KOG2607|consen 466 EEK------------------KHLEVKLRELLEDTRRLQKEI 489 (505)
T ss_pred HHH------------------HhcchHHHHHHHHHHHHHHHH
Confidence 433 567888888877777777764
No 384
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.97 E-value=2.6e+02 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 221 VARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
....++..|++++.. ...++..||.|..++++
T Consensus 158 ~~~~ei~~lk~el~~----~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK----KEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 333444444444443 55566666666666553
No 385
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=39.74 E-value=3.1e+02 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=14.8
Q ss_pred cccchhhHHHHH-HHHHHHHHHHH
Q 046111 349 NRFGEVEELVYL-RWVNACLRYEL 371 (520)
Q Consensus 349 dR~seVEELVYL-RWVNACLR~EL 371 (520)
+--.+|-=+.|| -|.=+|.-..|
T Consensus 210 ~~~~~Is~~~~lt~~~~~c~~~dl 233 (292)
T KOG4005|consen 210 DEEFDISRLEELTESLLACITADL 233 (292)
T ss_pred chhhhHHHHHHHHHHHHHHhhhcc
Confidence 333455556665 48899987666
No 386
>PF14282 FlxA: FlxA-like protein
Probab=39.65 E-value=1.2e+02 Score=27.06 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
.+.|.+.++.|...+..|..-..+||.++.+-...-...
T Consensus 46 ~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~~~ 84 (106)
T PF14282_consen 46 AEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQSS 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445566678888899999988889998888876555433
No 387
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=39.13 E-value=3.4e+02 Score=25.70 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046111 184 KTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLL 247 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~L 247 (520)
-...++.-...+......+..+..++........+-+.+...++....++...+.+-..+|.-|
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL 87 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERL 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555554444444444455544444444444444444333
No 388
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.89 E-value=4.3e+02 Score=26.71 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
..++..++..+..++..-..++.. +..++.++......+......+...+.+-+|.+.-+.......
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~ 145 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLEIT-------------VQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISR 145 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCH
Confidence 345555555555544433333332 2334445555556666666667777778888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046111 217 KELEVARNKIKELQRQIQ 234 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~~ 234 (520)
.+++.++......+.++.
T Consensus 146 ~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 146 EELDHARKALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777766666554
No 389
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.60 E-value=1.8e+02 Score=23.87 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 178 QRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 178 e~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
.........++..+..++..++.+|.+|+.++.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455667777777788888888888877776543
No 390
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=37.60 E-value=4e+02 Score=26.08 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 046111 290 KELQIEKRELLVKLDAAES 308 (520)
Q Consensus 290 k~LQ~EK~eL~~kL~~AE~ 308 (520)
.+||.||++|-.-|+.=|.
T Consensus 73 ~~Lq~EN~eL~~~leEhq~ 91 (181)
T PF05769_consen 73 RQLQQENRELRQSLEEHQS 91 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554443
No 391
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=37.46 E-value=4.3e+02 Score=26.35 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH---HHHHHHH--HHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNK---IKELQRQ--IQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~K---ir~Lqkk--~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
|-.|+..+..|+....+|+..+.......+++-....+ +..|++| ......++-.|+..|.+++..++.-.
T Consensus 29 Il~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 29 ILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444444433322222 2334333 33566788899999999998887765
No 392
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.33 E-value=5.3e+02 Score=31.50 Aligned_cols=24 Identities=17% Similarity=-0.062 Sum_probs=18.6
Q ss_pred HHHHHHhhcccchhhHHHHHHHHH
Q 046111 341 KQVEGLQMNRFGEVEELVYLRWVN 364 (520)
Q Consensus 341 kqVEqLq~dR~seVEELVYLRWVN 364 (520)
-+++++=.+|+.-.-|++-+||.|
T Consensus 708 ~~l~~~~~~ra~~~~d~~~~r~~~ 731 (913)
T KOG0244|consen 708 GTLLYAAEERAVRMWDLKRLRSEG 731 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888888
No 393
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=37.26 E-value=5.4e+02 Score=27.42 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 046111 144 RSLVLELQEREVKLEGELLE 163 (520)
Q Consensus 144 r~lVeeLqERE~~LE~eLLE 163 (520)
...+..++.+-..++.++-.
T Consensus 95 ~~~~~~~~~~l~~~~~q~~~ 114 (421)
T TIGR03794 95 RERLQESYQKLTQLQEQLEE 114 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566665566655533
No 394
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=37.19 E-value=2.7e+02 Score=33.60 Aligned_cols=67 Identities=31% Similarity=0.411 Sum_probs=44.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHH
Q 046111 282 VVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEEL 357 (520)
Q Consensus 282 v~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEEL 357 (520)
+.-|-++|..++.++.+|.-+|+.|+..|..+.-. |....+.-++++ +...++|...+.|+.-||.+
T Consensus 857 ~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~-----v~~l~~~e~~~k----~~l~~le~~~~~~~k~ve~~ 923 (948)
T KOG4436|consen 857 IAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERY-----VEQLLEHENKLK----RALQTLEDEDRARRKTVETL 923 (948)
T ss_pred ccccccchhhhHhhhhhhhhhhccccchhhHHHHH-----hhhhhcchHHHH----HHHhcccchhHHHHhhHHHH
Confidence 45566788999999999999999998877554332 222222223332 26777788888888877765
No 395
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.07 E-value=4.4e+02 Score=26.33 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
..+++.+...+..|+..|.+|+..+..... ++..|+.++.....-.++-.-.+.+++..|+.
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~----------el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQ----------ELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665554333 33344444444443333444455555555544
No 396
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=37.04 E-value=6.6e+02 Score=28.34 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 046111 356 ELVYLRWVNACLRYELRN 373 (520)
Q Consensus 356 ELVYLRWVNACLR~ELrn 373 (520)
|+-||+---.||+.||..
T Consensus 520 EiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 520 EIQYLKQEISSLKDELQT 537 (593)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788999999999999943
No 397
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.04 E-value=1.3e+02 Score=24.48 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 277 DLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
|++.|+.-|.+....++.+..-+..||+.-. .+++.+ .++|..-++....+...=+.|...++.|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~----F~~kAP-~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNEN----FVEKAP-EEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT----HHHHS--CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555665555555666666666655555211 133333 4466554555555444444455555544
No 398
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=37.02 E-value=51 Score=27.66 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
|..|+.+|..||+|..||.+++.--.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677788888888888888776443
No 399
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=36.45 E-value=3.5e+02 Score=24.98 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 046111 171 ESDIVELQRQLK-IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQ 243 (520)
Q Consensus 171 Ea~v~ELe~~L~-~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~q 243 (520)
|-.|.+||.+|. +|+++-+....+ ||.=.+-.-+++.--..+-.+|..+..++.+..-|+-.+.+|++.-
T Consensus 6 ElrIkdLeselsk~Ktsq~d~~~~e---LEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~ 76 (111)
T PF12001_consen 6 ELRIKDLESELSKMKTSQEDSNKTE---LEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLVEKEQNRSL 76 (111)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence 445666777765 444555553222 5555555556777777777788888888888887777777766543
No 400
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.42 E-value=6.5e+02 Score=28.09 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHH
Q 046111 2 IVRAGFLVAASIAAYAV 18 (520)
Q Consensus 2 lvr~g~~va~s~a~~~~ 18 (520)
|+..++++++.++|.+|
T Consensus 8 l~~~~l~~~~~ygG~v~ 24 (582)
T PF09731_consen 8 LLYTTLLGGVGYGGGVY 24 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666553
No 401
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.33 E-value=8.4e+02 Score=29.39 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+++|.-..+++..|..||..-.+...+..
T Consensus 581 ~~i~~l~~el~eq~~~~~~~~~~~~~~~~ 609 (809)
T KOG0247|consen 581 EEIEALDQELEEQKMELQQKFSEKKKAMA 609 (809)
T ss_pred hhhHHHHHHHHhhhHHHHhhccchhHHHh
Confidence 55666666666777777666655544433
No 402
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=36.28 E-value=3e+02 Score=31.57 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046111 147 VLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKI 226 (520)
Q Consensus 147 VeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki 226 (520)
|..|.+.+... ..|+.|- -+-.+.|-+|+..|..=.+++..+...|+.+|++|+.||-+.+-...+..||+..=..+
T Consensus 22 i~~l~~s~~~v-~~l~~~l--d~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 22 IHSLLESEKQV-NSLMEYL--DEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred HHHHHHhhHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhc
Confidence 44444444443 2344433 35566688889999999999999999999999999999999999999998888766555
Q ss_pred HH
Q 046111 227 KE 228 (520)
Q Consensus 227 r~ 228 (520)
..
T Consensus 99 ~i 100 (701)
T PF09763_consen 99 SI 100 (701)
T ss_pred CC
Confidence 43
No 403
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=35.77 E-value=5.8e+02 Score=27.60 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 195 I~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
....+.+-.|...-.....--.++++.++.-+..-+..+..-..+.++++..|...+..
T Consensus 129 l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~ 187 (352)
T COG1566 129 LDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSG 187 (352)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcc
Confidence 55666777777777777777888898888866655555554444445555444444444
No 404
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.39 E-value=9e+02 Score=29.46 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
+..-+.++...+..+..|-.+-+++ |-.|+||--++.++..= .-..-.+..+...|+-|+.+-++|..--.....+
T Consensus 621 L~~~~k~~~~~~~~~~~~i~~~q~e---~~klqeq~~Al~~i~~~-~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~ 696 (1104)
T COG4913 621 LRETVKAMLSREDFYMIKIMRQQGE---YIKLQEQANALAHIQAL-NFASIDLPSAQRQIAELQARLERLTHTQSDIAIA 696 (1104)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhc-chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 4566788888888888777776664 45566776666555433 4444555668888999999988888877778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 216 KKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 216 ~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
...|.+|....+.|.++.+..+...
T Consensus 697 ~~~l~aaQT~~~vler~~~~~~~e~ 721 (1104)
T COG4913 697 KAALDAAQTRQKVLERQYQQEVTEC 721 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988766543
No 405
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.86 E-value=2.3e+02 Score=28.29 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=41.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQ 199 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE 199 (520)
..|.+.+.-.+...++.|+..+.+|..-|-. -.....+.++|++|..-..+|+.+...+..|.
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k----a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEK----AKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888877776543321 22355677788877766666655555544443
No 406
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=34.83 E-value=7.1e+02 Score=28.10 Aligned_cols=45 Identities=33% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHH
Q 046111 247 LKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKE 291 (520)
Q Consensus 247 Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~ 291 (520)
|.++-..|+.++....++..+++.+.+.+...+.++.++.....+
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444555555555555555555444444433
No 407
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.67 E-value=4.2e+02 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=13.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 204 KLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 204 RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
|.+...........+++.++..+...+.
T Consensus 131 r~~~L~~~g~is~~~~~~~~~~~~~~~~ 158 (370)
T PRK11578 131 RQQRLAKTQAVSQQDLDTAATELAVKQA 158 (370)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3333334444445555555554444443
No 408
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.66 E-value=7.2e+02 Score=28.14 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHHHHHhhc----ccchhhHHHHHHHHHHHHHHHHhhc
Q 046111 339 LLKQVEGLQMN----RFGEVEELVYLRWVNACLRYELRNY 374 (520)
Q Consensus 339 L~kqVEqLq~d----R~seVEELVYLRWVNACLR~ELrn~ 374 (520)
..++|+.++.. |++=.+++-.|.=.|.=++.|-.|.
T Consensus 152 f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 152 FRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655533 5555666667777777777765443
No 409
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.22 E-value=6.1e+02 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=17.3
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 234 QLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 234 ~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
|...+.+|.+|.-|||=|..+..-
T Consensus 116 QLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888888888775544
No 410
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=34.18 E-value=98 Score=25.03 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKT----VEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 174 v~ELe~~L~~k~----~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
+.||++.|++.. -+-.-....|+.|+.||..|.+++.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 455666655443 1223356677777777777776654
No 411
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.94 E-value=62 Score=28.49 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
..|+..|..++..++..-++|.++.+..+
T Consensus 99 ~~i~~~A~~~~~~l~~~~~~lk~~~~~~~ 127 (131)
T PF05103_consen 99 EEIIEEARAEAERLREEIEELKRQAEQFR 127 (131)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666676666666655555443
No 412
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.45 E-value=5e+02 Score=25.92 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=4.9
Q ss_pred HHHHHHHhhc
Q 046111 398 AKQLMLEYAG 407 (520)
Q Consensus 398 AKqLmleya~ 407 (520)
|=|.-++|++
T Consensus 157 a~~~E~~yg~ 166 (251)
T PF11932_consen 157 AYQIEMEYGR 166 (251)
T ss_pred HHHHHHHhCC
Confidence 3344456654
No 413
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.16 E-value=7.5e+02 Score=27.87 Aligned_cols=96 Identities=25% Similarity=0.316 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~ 268 (520)
.-+..-|..|++.-..|+.++.... ++|-.+..+.+.+=.+-+...-.--++...|+.+|..|+.-+.+....-.-+
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sP---eKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i 295 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSP---EKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKI 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777665543 2222233333333223233333333455667888888888776643332222
Q ss_pred HHHHhhHHhHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKR 287 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr 287 (520)
.--......+|-.+++|++
T Consensus 296 ~~~~~e~d~~Et~~v~lke 314 (446)
T KOG4438|consen 296 SSDGVEYDSLETKVVELKE 314 (446)
T ss_pred HHhhhhhhhhHHHHHHHHH
Confidence 2222223456666666654
No 414
>PLN02678 seryl-tRNA synthetase
Probab=33.03 E-value=2.6e+02 Score=31.11 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=8.0
Q ss_pred HHHHHHHHhhcC
Q 046111 364 NACLRYELRNYQ 375 (520)
Q Consensus 364 NACLR~ELrn~~ 375 (520)
..|-|+|--.|.
T Consensus 262 s~cfR~Eags~G 273 (448)
T PLN02678 262 STCFRKEAGSHG 273 (448)
T ss_pred ccccccccccCC
Confidence 357888876655
No 415
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=32.71 E-value=8.8e+02 Score=28.54 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=47.1
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhh--------c-----chhhh-h---HHHHHHHHHh
Q 046111 131 TEMADNARELERLRSLVLELQEREVK-----------LEGELLEYY--------G-----LKEQE-S---DIVELQRQLK 182 (520)
Q Consensus 131 ~~~~~~~~EI~~Lr~lVeeLqERE~~-----------LE~eLLEy~--------~-----LKEQE-a---~v~ELe~~L~ 182 (520)
..+.++..||+.+-++|-+|||+-.. |+.=.-+.. . +=.|+ + .+..|+.++.
T Consensus 130 ~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~ 209 (683)
T PF08580_consen 130 DVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQ 209 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccc
Confidence 44677889999999999999987643 332222221 0 01122 1 4667777777
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 046111 183 IKTVEIDMLNITINSLQAER 202 (520)
Q Consensus 183 ~k~~Ei~~L~~kI~sLEsEn 202 (520)
=-.+-+++|=++|+..+.-.
T Consensus 210 PLraSLdfLP~Ri~~F~~ra 229 (683)
T PF08580_consen 210 PLRASLDFLPMRIEEFQSRA 229 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888877665
No 416
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.62 E-value=8.3e+02 Score=28.18 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=44.8
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 176 ELQRQLKIK-TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 176 ELe~~L~~k-~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
.+|.+|++- +..+-.+...|+.|.++|.+|-+++.+..++-.-++..+.|-|.|+.
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~ 309 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS 309 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566543 33455688899999999999999999999999988888888888875
No 417
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.44 E-value=5.6e+02 Score=26.13 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=5.4
Q ss_pred HhHHHHHHHHHH
Q 046111 276 KDLEVEVVELKR 287 (520)
Q Consensus 276 ~~LE~Ev~ELRr 287 (520)
..|-.+|.+||+
T Consensus 91 ~~Lk~~in~~R~ 102 (230)
T PF10146_consen 91 KPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 418
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.34 E-value=4.8e+02 Score=28.19 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQE 171 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQE 171 (520)
..|.+.|..-.++||+.-......+-|...++.+-
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C 37 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKC 37 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666666665555544443
No 419
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.23 E-value=6e+02 Score=27.46 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
+....+.|+.|-+.|++-...|..-.+|+. .+|.+......+.|.++..|+..+..++.
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~-------~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELS-------KLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677778888888877777776666554 34555555555556666666666666644
No 420
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=32.12 E-value=1e+03 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYY 165 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~ 165 (520)
-..++.|-...+.|..|=..-+...-+||
T Consensus 563 r~~ld~leaa~e~lE~r~~~~e~~~~e~~ 591 (984)
T COG4717 563 RKALDQLEAAYEALEGRFAAAEAAMAEWQ 591 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34455555555555555555454444444
No 421
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.12 E-value=1e+02 Score=25.44 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
.-|+.|...|..|++|..|+++.+..-.+.+
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788889999999999998877655544
No 422
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.03 E-value=2e+02 Score=30.27 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=26.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
-.+||++|+.||..|..|+-.|.+|-.+-..|
T Consensus 222 r~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 222 RKRKLDRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 45788999999999999999888888776666
No 423
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=32.02 E-value=4.7e+02 Score=25.13 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH
Q 046111 260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQ 293 (520)
Q Consensus 260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ 293 (520)
....++.|+.+.|+-+..|-.+|.++|+....|+
T Consensus 113 ~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 113 TLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788999999999999999999999988876
No 424
>PLN02678 seryl-tRNA synthetase
Probab=31.68 E-value=1.9e+02 Score=32.02 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHH
Q 046111 281 EVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEK 321 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~ 321 (520)
++.+|+...+.|+.+..++..+|.. .+..++|++.+++
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~---~~~~iPNi~~~~V 116 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDA---KLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCccC
Confidence 3344444444444444444444442 2556789886653
No 425
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.64 E-value=3.4e+02 Score=23.44 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
|..++..|++....|+.+|..|..++
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555666666554443
No 426
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.45 E-value=2.7e+02 Score=31.50 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=31.1
Q ss_pred chhhHHhhccccccCCCCcccchhhhhh-hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 100 LPEFEDLLSGEIEYQLPIDKFDEAEKNK-VYETEMADNARELERLRSLVLELQEREVKLEG 159 (520)
Q Consensus 100 lpef~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~ 159 (520)
+.|-.+.+.+++.|-.|-. |.+ .|.- +|.--=|+.|+..|.+...+-+++|.
T Consensus 87 ~~ESdeFlrEdmky~~~~~------kr~~~fH~--dD~~ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 87 VEESDEFLREDMKYRDSTR------KRSEKFHG--DDKHITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred cccchHHHHHHhhcccchh------hhhhhccC--CccceeHHHHHHHHHhhhhhcchHHH
Confidence 4455555555555443321 122 2332 33334588999999999999888874
No 427
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.95 E-value=1.4e+02 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
..++..++.++++.|.+|+.+|..|..+++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777755444
No 428
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.95 E-value=7.2e+02 Score=26.94 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 046111 189 DMLNITINSLQAERKKLQEQI----AQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKK 264 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv----~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~ 264 (520)
+--+..+..++.-+..+...+ ..+.++..++..+-.||.--.+-|....+...++...++.+++.++.+-.++...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555555544433 3345677777777778877777777777777777777777777766554332222
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcH
Q 046111 265 DVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHAND 337 (520)
Q Consensus 265 d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NE 337 (520)
+..--.+|-+.+.+|..-|.+...| =+.+|+.-.+.++++-+.+||.+.-
T Consensus 296 -------------V~~~t~~L~~IseeLe~vK~emeer----------g~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 296 -------------VSERTRELAEISEELEQVKQEMEER----------GSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111233334444444444443221 3567777777888998898776543
No 429
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.86 E-value=1.1e+02 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.384 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...+..|...|..|+.+|..|+.++..+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888887776654
No 430
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.85 E-value=4.1e+02 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 281 EVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
.+.=||+.=-.|+-.-.+|-.||++-.+
T Consensus 398 kqeilr~~G~~L~~~EE~Lr~Kldtll~ 425 (508)
T KOG3091|consen 398 KQEILRKRGYALTPDEEELRAKLDTLLA 425 (508)
T ss_pred HHHHHhccCCcCCccHHHHHHHHHHHHH
Confidence 3333444444444444555555554443
No 431
>PLN03188 kinesin-12 family protein; Provisional
Probab=30.53 E-value=1.3e+03 Score=29.65 Aligned_cols=90 Identities=29% Similarity=0.248 Sum_probs=48.2
Q ss_pred hhcchhhhhHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHHhHHHH----HHHHHHHHHHHHHH
Q 046111 164 YYGLKEQESDIVELQRQLKIKTVEI-------DMLNITINSLQAERKKLQEQIAQSSYVKKE----LEVARNKIKELQRQ 232 (520)
Q Consensus 164 y~~LKEQEa~v~ELe~~L~~k~~Ei-------~~L~~kI~sLEsEn~RL~~qv~e~~~v~~E----Le~ar~Kir~Lqkk 232 (520)
+-.|=||=+.+.|.-++|.++--.| ++--.+.+-==++.+=..+.++++..++.| -+++|.++|-||-|
T Consensus 1109 har~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q 1188 (1320)
T PLN03188 1109 HARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ 1188 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445566666777777766654443 333333333333444344556666666654 45566677777777
Q ss_pred HHH--HHHhhHHHHHHHHHHHhhhhHHHH
Q 046111 233 IQL--DANQTKGQLLLLKQQVSGLQAKEE 259 (520)
Q Consensus 233 ~~~--~a~q~K~qi~~Lkq~V~~Lq~~Ee 259 (520)
++- +|=|+.+++ +-.|..-|+
T Consensus 1189 lrdtaeav~aagel------lvrl~eaee 1211 (1320)
T PLN03188 1189 LRDTAEAVQAAGEL------LVRLKEAEE 1211 (1320)
T ss_pred HhhHHHHHHHHHHH------HHHHHHHHH
Confidence 763 333444444 445555543
No 432
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=30.35 E-value=6.9e+02 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEG 159 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~ 159 (520)
...+..++..+..++.+-.+|+.
T Consensus 95 ~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 95 RERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655555554
No 433
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=30.20 E-value=5.9e+02 Score=25.78 Aligned_cols=63 Identities=10% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLD 236 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~ 236 (520)
+..++.++..-..++......+...+.+-.|.+..+........+++.++.....++..+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~ 154 (327)
T TIGR02971 92 AAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEA 154 (327)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556666666666677777777777777777777777777777666665554433
No 434
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.92 E-value=4.2e+02 Score=27.89 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=16.1
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
..+++|+.++..+++....++.+..++
T Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 34 LEKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655543
No 435
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.65 E-value=5.9e+02 Score=25.58 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQ--IQLDANQTKGQLLLLKQQVSGLQAKE 258 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk--~~~~a~q~K~qi~~Lkq~V~~Lq~~E 258 (520)
...++.|..+|..|+.|..+...++........+= .-+.=+..|++| ......+.-.++..|.+.+..++.-.
T Consensus 24 ~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~-~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~ 98 (211)
T PTZ00464 24 GGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSR-HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVK 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665555443311110 011112233333 33455666677778888777766554
No 436
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.63 E-value=1.3e+02 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
|.-|+..++.||.+-++|++-+..|-++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999998887763
No 437
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=29.44 E-value=7.3e+02 Score=26.59 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 046111 197 SLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235 (520)
Q Consensus 197 sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~ 235 (520)
.|+-+..+..++-.++..+..|....-.-+..|.+.-++
T Consensus 47 aLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 47 ALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344455555566666666666666666555555554443
No 438
>PTZ00491 major vault protein; Provisional
Probab=29.40 E-value=1e+03 Score=29.04 Aligned_cols=50 Identities=30% Similarity=0.312 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 150 LQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 150 LqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
-||=+.+=+.+.+ ||++ --.||+|--.-.++.+.-+.++-.||+++.-.+
T Consensus 663 sqEa~A~h~a~~~------eQea-~g~Lerqk~~d~~~aE~~r~~llel~a~s~ave 712 (850)
T PTZ00491 663 SQEAAARHQAELL------EQEA-RGRLERQKMHDKAKAEEQRTKLLELQAESAAVE 712 (850)
T ss_pred hHHHHHHHHHHHH------HHHh-hchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHh
Confidence 3444555455443 3454 233555544445555555566666666665544
No 439
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.15 E-value=5.5e+02 Score=25.09 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
.+.+.+.++++..++.+=...+.-|.-|
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555555555554444444444433
No 440
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.90 E-value=8.6e+02 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
+.|+..|...-.||.+|+.|=-+.
T Consensus 288 r~Lr~~I~~VarENs~LqrQKle~ 311 (442)
T PF06637_consen 288 RSLRAGIERVARENSDLQRQKLEA 311 (442)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHH
Confidence 457778888888888888664443
No 441
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.81 E-value=4.9e+02 Score=27.60 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 168 KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 168 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
-|.+-.+.+|++.+..|..+++.++..+..|+.+..-|+++|.+-..+.
T Consensus 122 ee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 122 EELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777776777777777777777666666666665544444
No 442
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=28.79 E-value=6.4e+02 Score=27.26 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhHHhHHH
Q 046111 140 LERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE--QIAQSSYVKK 217 (520)
Q Consensus 140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~--qv~e~~~v~~ 217 (520)
++.|...|.+.+.|=.+-...|.+- ++ ++-.....+..+|..|..+|+.|=.+-+.|-+ .|.+..++..
T Consensus 85 ~~~l~~~v~d~~rri~~~kerL~e~-----~e----e~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~ 155 (319)
T KOG0796|consen 85 LEILERFVADVDRRIEKAKERLAET-----VE----ERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMK 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----hh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6677788888888865566555554 12 22222223345566666666666666665554 6888899999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhH
Q 046111 218 ELEVARN-KIKELQRQIQLDANQTK 241 (520)
Q Consensus 218 ELe~ar~-Kir~Lqkk~~~~a~q~K 241 (520)
++|.+|+ +.............++.
T Consensus 156 e~E~lk~~e~e~~~~~~~~~~~~~~ 180 (319)
T KOG0796|consen 156 EVEELKAKEKEEAEESYNTTMPGAS 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHccCcchhh
Confidence 9999997 55555555555555554
No 443
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.64 E-value=6.3e+02 Score=25.61 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111 199 QAERKKLQEQIAQSSYVKKELEVAR----------NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 199 EsEn~RL~~qv~e~~~v~~ELe~ar----------~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~ 268 (520)
+.=+..||.-|....-..+.+.... -.++-....+.......++.+..|.+.....+...++--.+..++
T Consensus 42 ~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el 121 (203)
T KOG3433|consen 42 QTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDEL 121 (203)
T ss_pred hHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445666666666666665555442 222333333334444455566677776666666655555566678
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
.+++..+++ ...-||--..-+|+=+-..
T Consensus 122 ~kklnslkk---~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 122 TKKLNSLKK---ILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcCHHH
Confidence 888877666 3333444444444433333
No 444
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=28.34 E-value=1.6e+02 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
|.+.|...|+.+++|..+|..+..++..+...+.+...-|..|..+-
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~ 172 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQE 172 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34456667777777777777777777777777777766666665443
No 445
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=28.33 E-value=35 Score=30.59 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHH
Q 046111 358 VYLRWVNACLRYEL 371 (520)
Q Consensus 358 VYLRWVNACLR~EL 371 (520)
||=+||.+|..-.|
T Consensus 65 VY~~wiD~~~eg~i 78 (99)
T PRK14892 65 VYNKFIDLYLEGKI 78 (99)
T ss_pred hHHHHHHHHHhcCC
Confidence 89999999999877
No 446
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.27 E-value=2.3e+02 Score=24.81 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 046111 213 SYVKKELEVARNKIKELQRQIQL 235 (520)
Q Consensus 213 ~~v~~ELe~ar~Kir~Lqkk~~~ 235 (520)
.++.++++-+|.||-++|.|++.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~ 26 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKE 26 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665543
No 447
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=2.7e+02 Score=26.62 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQ 230 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lq 230 (520)
+++.|...+.-|+++-.-|+.++..+.....|+..+..=++.++
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk 50 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLK 50 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555443
No 448
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=28.03 E-value=4.1e+02 Score=26.96 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHH
Q 046111 325 AREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358 (520)
Q Consensus 325 a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELV 358 (520)
.+.....+...|-.+.++++++..+=+.-+.++.
T Consensus 119 l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~ 152 (256)
T PF14932_consen 119 LKKAQKELSAECSKLNNELNQLLGEVSKLASELA 152 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888776666665553
No 449
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.96 E-value=4.6e+02 Score=23.76 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQ 230 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lq 230 (520)
+..|...+..|+.+-..|..++..+.....++..+..-++.|.
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344444444444444444444444444444444444443
No 450
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.88 E-value=2.7e+02 Score=29.67 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.6
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
+-|+.|++||..+.-|++-+.+=|++...|-.-|+-...
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKq 53 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQ 53 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457788899999999998888888887777655554443
No 451
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.75 E-value=1.2e+03 Score=28.60 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
....|+.|+-|++-|+..+....+-.-=+++|+
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566777777777666666555555555554
No 452
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.63 E-value=6.6e+02 Score=25.49 Aligned_cols=162 Identities=25% Similarity=0.281 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL 268 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~ 268 (520)
++|...|.-++++...+...++........|+.=-.++.....+.+..+.. .|+..++..++.-.+-
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~-------------Al~~g~E~LAr~al~~ 93 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL-------------ALQAGNEDLAREALEE 93 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCCCHHHHHHHHHH
Confidence 667777777777777666666665555554444333333333333332222 2333333322221111
Q ss_pred HHHH-hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 269 EKKL-KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 269 EkKl-~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
...+ +.+..++..+.+++.....|...-..|-.|+....++...+- -...++++.+.++..-+.-.- .==
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~---ar~~~akA~~~v~~~~~~~s~------~sa 164 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK---ARKAAAKAQEKVNRSLGGGSS------SSA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCc------hhh
Confidence 1111 112333444444444444444444444444444333321110 112333333333332221100 111
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHh
Q 046111 348 MNRFGEVEELVYLRWVNACLRYELR 372 (520)
Q Consensus 348 ~dR~seVEELVYLRWVNACLR~ELr 372 (520)
+..|..+++-|==+--+|=+.-||-
T Consensus 165 ~~~fer~e~kiee~ea~a~~~~el~ 189 (225)
T COG1842 165 MAAFERMEEKIEEREARAEAAAELA 189 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3456667777777777777777774
No 453
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.63 E-value=1e+03 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELL 300 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~ 300 (520)
+..|+-++.=.|..-..|-....++.
T Consensus 372 ~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 372 VLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555555544444543
No 454
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=27.57 E-value=4.1e+02 Score=24.41 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=22.8
Q ss_pred hhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 046111 164 YYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL 205 (520)
Q Consensus 164 y~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL 205 (520)
|+-|.|-.+.++.|...+ .++..+...|..++++...+
T Consensus 2 ~FTl~EA~~lLP~l~~~~----~~~~~~~~~~~~~~~~l~~~ 39 (120)
T PF09969_consen 2 YFTLEEANALLPLLRPIL----EEIRELKAELEELEERLQEL 39 (120)
T ss_pred ccCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 566777788888777663 34455555555555444433
No 455
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.42 E-value=51 Score=33.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHH
Q 046111 193 ITINSLQAERKKLQEQIAQSSYVKK 217 (520)
Q Consensus 193 ~kI~sLEsEn~RL~~qv~e~~~v~~ 217 (520)
.||..||.|..+|++|++.+..+.+
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5899999999999999998776665
No 456
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.40 E-value=3.4e+02 Score=26.61 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHH
Q 046111 166 GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ----IAQSSYVKKELEVARNKI 226 (520)
Q Consensus 166 ~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q----v~e~~~v~~ELe~ar~Ki 226 (520)
.|+........++++......++..|..++..|+.|+..|... -.+|..+..=++.||..+
T Consensus 91 ~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 91 NLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PRK10698 phage shock protein PspA; Provisional
Probab=27.25 E-value=6.4e+02 Score=25.21 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+..|+.+....+....+|+..-..|-.|+..|..+-
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777666544
No 458
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.15 E-value=3.8e+02 Score=29.30 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=7.7
Q ss_pred HHHHHHHhhcC
Q 046111 365 ACLRYELRNYQ 375 (520)
Q Consensus 365 ACLR~ELrn~~ 375 (520)
.|-|+|...|.
T Consensus 258 ~~fR~Eag~~g 268 (425)
T PRK05431 258 PCFRSEAGSAG 268 (425)
T ss_pred CEecCCCCcCC
Confidence 58888886553
No 459
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.81 E-value=4e+02 Score=22.99 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046111 217 KELEVARNKIKELQRQI 233 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~ 233 (520)
.+++.++++-+.+.++|
T Consensus 43 ~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 43 QELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33333333333333333
No 460
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.79 E-value=1.9e+02 Score=27.45 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 184 KTVEIDMLNITINSLQAERKKLQ--EQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~RL~--~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
...+...|..+|..|..|...+. ++.+.+.++..++..+..++..+++.......
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666554 56777777777777776666666665554433
No 461
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.55 E-value=2.8e+02 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046111 189 DMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
..+...|+.++.||+.+++.+..
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 462
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=26.31 E-value=6.2e+02 Score=24.71 Aligned_cols=96 Identities=20% Similarity=0.365 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHH
Q 046111 219 LEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRE 298 (520)
Q Consensus 219 Le~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~e 298 (520)
.-.|+..+..++..+..+...-+.++..+..++. .++...-++...++++- +.|+..-.+|.+....|.....+
T Consensus 55 ~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~---~rE~~L~~~~~~L~~~e---~~l~~~~~~l~~~~~~l~~~~~e 128 (201)
T PF12072_consen 55 ELEAKEEAQKLRQELERELKERRKELQRLEKRLQ---QREEQLDRRLEQLEKRE---EELEKKEEELEQRKEELEEREEE 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666677766666666554444332 24444334444444443 22333334444445555555555
Q ss_pred HHHhHHHHHHHHhhcCCCchhH
Q 046111 299 LLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 299 L~~kL~~AE~~~~~lsnv~e~~ 320 (520)
+..........+..++++|.++
T Consensus 129 ~~~~~~~~~~~Le~iAglT~eE 150 (201)
T PF12072_consen 129 LEELIEEQQQELEEIAGLTAEE 150 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCHHH
Confidence 6555666666777888998665
No 463
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.25 E-value=1.2e+03 Score=27.84 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.5
Q ss_pred HHHHHH
Q 046111 11 ASIAAY 16 (520)
Q Consensus 11 ~s~a~~ 16 (520)
+|+|-|
T Consensus 279 ~a~a~~ 284 (782)
T PRK00409 279 FARARY 284 (782)
T ss_pred HHHHHH
Confidence 344443
No 464
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.25 E-value=1e+03 Score=27.28 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 224 NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 224 ~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
.+++.|.+-++...+=.+.+-..|++=...|+..
T Consensus 140 ~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE 173 (508)
T PF00901_consen 140 NQIEILEKALKSYGKIVKEENKQLDRLARALQKE 173 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 465
>PLN02320 seryl-tRNA synthetase
Probab=26.11 E-value=3.5e+02 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046111 189 DMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
..+..++..|+++.+.+..++..
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666544
No 466
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.05 E-value=2.6e+02 Score=21.72 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 183 IKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 183 ~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
+-...-+.|...-.+|..||..|++++...
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666555443
No 467
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.96 E-value=5.6e+02 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
+..+...+..|+++...|++++.++ ...+-++.+.+.-.+|+..++..+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~el---kd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEAL---KDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444432 3344444444555555555444443
No 468
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.77 E-value=4.6e+02 Score=22.99 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKK 264 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~ 264 (520)
..++..-......|+.-|+.-.....+.......|...-..++.....+ ..--.+|..|.++|..|+.-=...-..
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l----~~~l~~Id~Ie~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL----QPYLQQIDQIEEQVTELEQTVYELDEY 88 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHhhH
Q 046111 265 DVELEKKLKSV 275 (520)
Q Consensus 265 d~E~EkKl~~l 275 (520)
.-++|.|++.+
T Consensus 89 sk~LE~k~k~l 99 (99)
T PF10046_consen 89 SKELESKFKKL 99 (99)
T ss_pred HHHHHHHhhcC
No 469
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.71 E-value=3.8e+02 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIK 227 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir 227 (520)
..+|..|+-+|..|..+-.-|+.++ ..+..|-++|..+|.
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v---~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADV---QAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455566666666666666666544 356666666666554
No 470
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.66 E-value=3.9e+02 Score=29.24 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
.++|-.+++++.+.+..-.+||..-+.|++.....+...+-.-+.++..|+.+|.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555555555555555555555555555554444444444444444443
No 471
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.48 E-value=7.3e+02 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=13.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 180 QLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 180 ~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
++.....+++.+...+..++.+-.++.
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555444444
No 472
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.40 E-value=6.2e+02 Score=28.56 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=28.0
Q ss_pred hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
+-||-....|--|=..|.-|...++++...+..|+.....++.++. .+.-+|+....+.|.||+.+.
T Consensus 425 ~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~---~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 425 FMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQ---ELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333333222 223334444444444444443
No 473
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.31 E-value=1.1e+03 Score=27.14 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HhhhhHHHHHHhhhhHHHHHHH
Q 046111 203 KKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ-VSGLQAKEEEAIKKDVELEKKL 272 (520)
Q Consensus 203 ~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~-V~~Lq~~Eee~~~~d~E~EkKl 272 (520)
+.|+.-..-+.-..+.|+..|+.-.-||=+ .++.|+.-..|+++ +..+|.+..- +-.+.|+++-|
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqle----lkK~k~nyv~LQEry~~eiQqKnks-vsqclEmdk~L 455 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLE----LKKIKANYVHLQERYMTEIQQKNKS-VSQCLEMDKTL 455 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHh
Confidence 345665566666777888888776666554 45567788888887 5567766654 34455666544
No 474
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.25 E-value=3.4e+02 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
+.+..-+++++++...|++++.++ ...+-++.+.+.-++|+..++..+.
T Consensus 15 ~~~~~~~~~~~~ei~~l~~e~~el---kd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 15 DIAEEIVETANPEITALKAEIEEL---KDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443 3444455555555555555554444
No 475
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.19 E-value=4.6e+02 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
|..+.-........|+.-++++..+|.+|-..|
T Consensus 51 La~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 51 LAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666667777777777665444
No 476
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=25.10 E-value=5.5e+02 Score=28.60 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
|+.+..||++|.....-+=.=++|+.--|-+.++|+
T Consensus 185 e~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~ 220 (462)
T KOG2417|consen 185 ETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQ 220 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666677666544444444444444444444444
No 477
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=24.98 E-value=8.4e+02 Score=25.78 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~ 235 (520)
+.++..|..|.-+-.-|+-|+.+...+-.||.+++.+-.-|+.+++.
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~ 58 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQG 58 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888777777766553
No 478
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.88 E-value=1.9e+02 Score=23.49 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 325 AREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 325 a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
|..++..|+.+|..|..+++-+|+.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999998874
No 479
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=24.82 E-value=4.8e+02 Score=28.04 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 195 I~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
+...+.+..|.+...........+++.++..++.++..++
T Consensus 141 l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~a~a~l~ 180 (415)
T PRK11556 141 LANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIK 180 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777888888777766655543
No 480
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=24.80 E-value=1.3e+02 Score=25.09 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.3
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIE 295 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~E 295 (520)
+.+++|=.||.-|++.|++|+++
T Consensus 21 ~tL~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 21 QTLKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHhcccccee
Confidence 45788999999999999988875
No 481
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.62 E-value=4.4e+02 Score=28.73 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=7.0
Q ss_pred HHHHHHHhhc
Q 046111 365 ACLRYELRNY 374 (520)
Q Consensus 365 ACLR~ELrn~ 374 (520)
.|-|+|...+
T Consensus 260 ~~FR~E~g~~ 269 (418)
T TIGR00414 260 PCFRSEAGSY 269 (418)
T ss_pred ccccCCCCcc
Confidence 6788887544
No 482
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=24.61 E-value=45 Score=29.53 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 197 SLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 197 sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
.|+.+...++..++.+..+.++++..+
T Consensus 10 ~l~~~~~~~~~~~~~l~~~~~~~~~~~ 36 (144)
T PF04350_consen 10 QLQQELAQLKEKVANLEELKKQLEQLE 36 (144)
T ss_dssp --HHHHHHTGGG-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 483
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=24.57 E-value=6.3e+02 Score=29.31 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=52.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH-H------HHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111 202 RKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL-D------ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS 274 (520)
Q Consensus 202 n~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~-~------a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~ 274 (520)
..-++++-.+|..+-+.++.+..+++.|-.++.. . -.+.+++|. .|.+..+.|+.+-+.-.+
T Consensus 507 k~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~-----------qEYeki~~dp~y~eeK~R 575 (604)
T KOG4796|consen 507 KKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQIL-----------QEYEKIRKDPNYMEEKQR 575 (604)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH-----------HHHHHhhcCccHHHHHHH
Confidence 4567788899999999999999999999999993 2 233333331 233333455555555555
Q ss_pred HHhHHHHHHHHHHHhHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQI 294 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~ 294 (520)
+..|-.+..-+++...+...
T Consensus 576 ceYLhsKLaHIK~lI~efDk 595 (604)
T KOG4796|consen 576 CEYLHSKLAHIKTLIGEFDK 595 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666655555555544433
No 484
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.46 E-value=7.5e+02 Score=25.06 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHHHHHHH--HhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccc
Q 046111 283 VELKRKNKELQIEKRELL--VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFG 352 (520)
Q Consensus 283 ~ELRr~Nk~LQ~EK~eL~--~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~s 352 (520)
.-+|...+.|+.-+..-. .||..||. .+..|+++++.+ |+.|..++-+|-..|..
T Consensus 125 D~~r~~~~kl~~K~~k~~~~~KL~kae~------------el~~Ak~~ye~~---N~~L~~ELP~l~~~r~~ 181 (225)
T cd07590 125 ERLQAKVEKLAEKEKTGPNLAKLEQAEK------------ALAAARADFEKQ---NIKLLEELPKFYNGRTD 181 (225)
T ss_pred HHHHHHHHHHHhCccCChhHHHHHHHHH------------HHHHHHHHHHHH---HHHHHHHhHHHHHHccH
Confidence 345555555654333222 55555543 335567777764 89999999999999865
No 485
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.40 E-value=99 Score=28.75 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEY 164 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy 164 (520)
.+||+.||..|.+|.+|-..||.|--=+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998874433
No 486
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.02 E-value=5.2e+02 Score=23.02 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERK 203 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~ 203 (520)
..++..|...+.....|=..+|.++--.=. ...+-.|+-.+..-..+++.++.+|..+.....
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt----~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT----RDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677888888888877777777777765544 333444444444444444444444444443333
No 487
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.97 E-value=1.2e+03 Score=27.30 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcchhhh----------hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046111 152 EREVKLEGELLEYYGLKEQE----------SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221 (520)
Q Consensus 152 ERE~~LE~eLLEy~~LKEQE----------a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ 221 (520)
+|.++--.--+-.||+.+.- ..-.+|+.++..-.++|..+...|..++.|..+-...+.....=..+.-.
T Consensus 49 ~rtV~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 49 QRTVRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HhHHHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111 222 ARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 222 ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
=..-++.-..+.....+.-++-..-|+.+|..++.
T Consensus 129 k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~ 163 (632)
T PF14817_consen 129 KQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQD 163 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=23.97 E-value=4.9e+02 Score=25.42 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKK-----ELEVARNKIKELQRQIQLDANQTKGQL 244 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~-----ELe~ar~Kir~Lqkk~~~~a~q~K~qi 244 (520)
..|+-.+-+.|+-||-|..||+.++.+--.... +++..+.+|.-|++.++.--+.+|-++
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCeanrDEL 81 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEANRDEL 81 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 356777788899999999999987766554443 467777888888888887766666555
No 489
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=23.89 E-value=4.9e+02 Score=22.66 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR 223 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar 223 (520)
..-..++-.....|+.-...|++.+..+.. .++++.|+
T Consensus 51 ~Et~~mipd~~~RL~~a~~~L~~~l~~~~~-~ee~~~ak 88 (90)
T PF02970_consen 51 EETKMMIPDCQQRLEKAVEDLEEFLEEEEG-LEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCSHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCcC-chhHHHHh
Confidence 333444455555555666666666555554 44444443
No 490
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.84 E-value=5.8e+02 Score=23.57 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
+.+|+.+|.|+++-...=-.-|.+|-.+|.-+|.
T Consensus 60 ~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 60 IAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455554444433344455555554443
No 491
>PRK02119 hypothetical protein; Provisional
Probab=23.79 E-value=4.5e+02 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 190 MLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 190 ~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
.+..+|..||....=.+.-+.++..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~ 31 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQA 31 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333334444333
No 492
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=4.6e+02 Score=28.76 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Q 046111 203 KKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEE 260 (520)
Q Consensus 203 ~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee 260 (520)
.|.++++..+.+..+.|.+....++.=++++....+.-++|...|+....-|..+.+|
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444455555555555555555555555555555444444444444444444444433
No 493
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.63 E-value=5.1e+02 Score=23.05 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh------HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 183 IKTVEIDMLNITINSLQAERKKLQEQIAQ------SSYVKKELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 183 ~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e------~~~v~~ELe~ar~Kir~Lqkk~~~~a 237 (520)
++..+++.+..++......-..++..+.. ...+.-++...+..++.|..+++...
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555544444444444444443332 24445555555566666666555543
No 494
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=4.2e+02 Score=22.93 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQA 200 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs 200 (520)
++.+.+||-+++....-|+.|+.-+...+-
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~ 36 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQL 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444333
No 495
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.53 E-value=2.2e+02 Score=24.27 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITI 195 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI 195 (520)
....+..||.-+...+.-=..|.+ =-+...||+..+..|+.++..+..-+..|...+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555444433333332 124558889889999988888888877776554
No 496
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.44 E-value=3e+02 Score=25.26 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=27.9
Q ss_pred HhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 272 LKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 272 l~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
+..+.+|-..|.+|=--|..|+.||..|-.+|+..
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777778888888999999999998888854
No 497
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.44 E-value=79 Score=26.32 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYG 166 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 166 (520)
..||+-||+.|.+|++|=..|+.|---++.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 569999999999999999999887554444
No 498
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=23.42 E-value=46 Score=30.44 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH
Q 046111 358 VYLRWVNACLR 368 (520)
Q Consensus 358 VYLRWVNACLR 368 (520)
||--||.||=+
T Consensus 70 VYSdWiDaCe~ 80 (109)
T KOG3214|consen 70 VYSDWIDACEA 80 (109)
T ss_pred HHHHHHHHHHH
Confidence 89999999954
No 499
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.42 E-value=1e+02 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~ 206 (520)
|++.|+.+|.-|++.|..|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444
No 500
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.39 E-value=6.2e+02 Score=24.72 Aligned_cols=64 Identities=6% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV--KKELEVARNKIKELQRQIQLDANQT 240 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v--~~ELe~ar~Kir~Lqkk~~~~a~q~ 240 (520)
++.++..-......+..+|..|+.....+.+.|+-|..+ +.|+|...+++..|..+|.......
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Done!