Query 046111
Match_columns 520
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.2 0.099 3.4E-06 50.6 22.6 30 275-304 106-135 (256)
2 2dfs_A Myosin-5A; myosin-V, in 97.0 0.03 1E-06 64.6 20.2 129 198-344 919-1047(1080)
3 2v71_A Nuclear distribution pr 96.9 0.17 5.7E-06 48.3 21.2 132 136-310 8-139 (189)
4 1i84_S Smooth muscle myosin he 96.8 0.0056 1.9E-07 70.7 11.5 32 179-210 899-930 (1184)
5 3na7_A HP0958; flagellar bioge 96.6 0.34 1.2E-05 46.8 20.9 70 164-233 10-83 (256)
6 2dfs_A Myosin-5A; myosin-V, in 96.5 0.098 3.3E-06 60.5 19.3 111 188-299 930-1042(1080)
7 1i84_S Smooth muscle myosin he 96.3 0.0094 3.2E-07 68.8 9.8 73 138-210 819-902 (1184)
8 3vkg_A Dynein heavy chain, cyt 96.2 0.69 2.4E-05 59.1 25.9 181 149-348 1914-2098(3245)
9 1c1g_A Tropomyosin; contractIl 96.2 0.65 2.2E-05 41.6 30.9 25 137-161 12-36 (284)
10 2v71_A Nuclear distribution pr 93.5 5.4 0.00018 38.0 21.1 100 127-234 13-112 (189)
11 3vkg_A Dynein heavy chain, cyt 93.4 5.2 0.00018 51.5 22.2 19 339-357 2078-2096(3245)
12 3oja_B Anopheles plasmodium-re 92.8 3 0.0001 43.4 16.5 36 275-310 546-581 (597)
13 3oja_B Anopheles plasmodium-re 92.4 1.6 5.4E-05 45.6 13.7 92 136-233 454-560 (597)
14 2fxo_A Myosin heavy chain, car 91.9 6.1 0.00021 34.7 16.7 16 244-259 64-79 (129)
15 3swk_A Vimentin; cytoskeleton, 90.7 0.47 1.6E-05 39.7 6.1 74 281-361 1-83 (86)
16 1ik9_A DNA repair protein XRCC 90.5 1.8 6E-05 41.7 10.7 56 190-251 143-198 (213)
17 3o0z_A RHO-associated protein 90.3 12 0.00041 35.1 19.0 108 191-308 18-132 (168)
18 2fxo_A Myosin heavy chain, car 89.6 10 0.00035 33.3 17.1 11 338-348 115-125 (129)
19 3oja_A Leucine-rich immune mol 89.4 20 0.00068 36.6 18.2 37 274-310 436-472 (487)
20 2ocy_A RAB guanine nucleotide 87.0 19 0.00065 33.3 15.5 27 319-345 100-126 (154)
21 3u1c_A Tropomyosin alpha-1 cha 86.8 6.2 0.00021 33.6 10.5 63 174-236 32-98 (101)
22 2wt7_B Transcription factor MA 86.6 3.7 0.00013 35.0 8.9 81 226-313 8-88 (90)
23 3mq9_A Bone marrow stromal ant 86.0 12 0.00041 38.1 14.1 71 217-293 390-463 (471)
24 3hnw_A Uncharacterized protein 85.3 11 0.00036 34.0 11.8 95 188-303 34-133 (138)
25 3swk_A Vimentin; cytoskeleton, 84.5 11 0.00039 31.3 10.8 33 276-308 45-77 (86)
26 3ol1_A Vimentin; structural ge 84.3 11 0.00039 32.8 11.3 31 136-166 18-48 (119)
27 2jee_A YIIU; FTSZ, septum, coi 84.3 12 0.00043 31.3 10.9 41 174-214 8-48 (81)
28 3o0z_A RHO-associated protein 83.0 31 0.0011 32.4 21.0 38 273-310 111-152 (168)
29 3oja_A Leucine-rich immune mol 82.1 29 0.001 35.4 15.1 64 171-237 420-483 (487)
30 2efr_A General control protein 81.4 33 0.0011 31.6 21.3 95 248-347 55-153 (155)
31 2eqb_B RAB guanine nucleotide 81.0 25 0.00084 30.4 11.7 27 319-345 68-94 (97)
32 2no2_A HIP-I, huntingtin-inter 79.6 30 0.001 30.0 12.0 56 165-220 47-102 (107)
33 3u59_A Tropomyosin beta chain; 79.5 19 0.00064 30.4 10.5 59 177-235 35-97 (101)
34 3s4r_A Vimentin; alpha-helix, 79.4 25 0.00086 29.6 11.2 29 278-306 54-82 (93)
35 3ol1_A Vimentin; structural ge 79.0 22 0.00075 31.0 11.1 29 276-304 65-93 (119)
36 2v66_B Nuclear distribution pr 78.4 11 0.00036 33.3 8.9 56 281-344 4-59 (111)
37 3u59_A Tropomyosin beta chain; 78.1 30 0.001 29.1 12.6 37 274-310 38-74 (101)
38 3ghg_A Fibrinogen alpha chain; 76.1 51 0.0017 36.0 14.9 29 336-364 178-206 (562)
39 1gd2_E Transcription factor PA 75.8 5.9 0.0002 32.2 6.1 36 269-304 25-60 (70)
40 2b9c_A Striated-muscle alpha t 74.0 33 0.0011 31.2 11.2 117 192-308 2-122 (147)
41 1ic2_A Tropomyosin alpha chain 73.6 27 0.00091 28.4 9.6 38 273-310 34-71 (81)
42 2v66_B Nuclear distribution pr 73.2 48 0.0016 29.2 13.3 71 216-310 16-86 (111)
43 2oqq_A Transcription factor HY 72.7 11 0.00036 28.3 6.2 37 172-208 3-39 (42)
44 3i00_A HIP-I, huntingtin-inter 71.8 19 0.00065 31.9 8.8 72 137-217 14-85 (120)
45 2e7s_A RAB guanine nucleotide 71.4 23 0.00079 32.2 9.4 26 319-344 88-113 (135)
46 3mq9_A Bone marrow stromal ant 70.4 83 0.0028 31.9 14.5 101 207-311 363-467 (471)
47 3hnw_A Uncharacterized protein 68.4 36 0.0012 30.5 10.1 67 137-209 67-133 (138)
48 1x79_B RAB GTPase binding effe 67.5 66 0.0022 28.4 12.6 47 195-251 8-54 (112)
49 2jee_A YIIU; FTSZ, septum, coi 67.1 54 0.0018 27.5 10.1 52 182-233 23-78 (81)
50 1t2k_D Cyclic-AMP-dependent tr 67.0 31 0.0011 26.5 8.2 34 270-303 19-52 (61)
51 1go4_E MAD1 (mitotic arrest de 66.5 28 0.00096 30.2 8.5 31 184-214 10-40 (100)
52 2v4h_A NF-kappa-B essential mo 65.8 71 0.0024 28.2 11.6 24 177-200 36-59 (110)
53 1go4_E MAD1 (mitotic arrest de 64.2 9.9 0.00034 33.0 5.3 72 275-346 14-94 (100)
54 2i1j_A Moesin; FERM, coiled-co 64.2 12 0.00041 40.4 7.2 19 137-155 299-317 (575)
55 1p9i_A Cortexillin I/GCN4 hybr 64.1 5.1 0.00018 27.7 2.7 27 189-215 2-28 (31)
56 2v4h_A NF-kappa-B essential mo 63.4 80 0.0027 27.9 11.3 16 241-256 61-76 (110)
57 3bas_A Myosin heavy chain, str 62.6 65 0.0022 26.6 10.2 51 259-309 14-64 (89)
58 3s9g_A Protein hexim1; cyclin 61.0 51 0.0017 28.8 9.0 24 274-297 66-89 (104)
59 2dgc_A Protein (GCN4); basic d 59.0 15 0.0005 29.0 5.0 41 260-302 19-59 (63)
60 2wt7_A Proto-oncogene protein 58.7 62 0.0021 25.1 9.1 31 269-299 19-49 (63)
61 1x79_B RAB GTPase binding effe 58.6 52 0.0018 29.1 8.9 64 285-349 36-99 (112)
62 3a7p_A Autophagy protein 16; c 58.2 1.2E+02 0.004 28.2 11.5 66 136-207 66-131 (152)
63 1jnm_A Proto-oncogene C-JUN; B 56.7 22 0.00074 27.6 5.6 32 269-300 18-49 (62)
64 2lf0_A Uncharacterized protein 56.6 23 0.00078 31.8 6.3 47 298-351 14-60 (123)
65 3a7o_A Autophagy protein 16; c 56.0 22 0.00074 29.4 5.6 41 171-211 31-71 (75)
66 2q6q_A Spindle POLE BODY compo 54.4 74 0.0025 26.2 8.4 27 175-201 6-32 (74)
67 4h22_A Leucine-rich repeat fli 53.7 46 0.0016 29.1 7.6 65 175-242 19-83 (103)
68 3s4r_A Vimentin; alpha-helix, 53.2 1E+02 0.0034 25.9 9.7 79 136-225 14-92 (93)
69 3q8t_A Beclin-1; autophagy, AT 52.5 1.1E+02 0.0036 25.9 13.0 26 139-164 5-30 (96)
70 1m1j_C Fibrinogen gamma chain; 52.5 1.7E+02 0.0058 30.6 13.2 15 138-152 38-52 (409)
71 1dh3_A Transcription factor CR 52.4 42 0.0014 25.7 6.5 31 270-300 19-49 (55)
72 3iv1_A Tumor susceptibility ge 51.8 1E+02 0.0035 25.6 9.7 63 227-299 10-72 (78)
73 2ocy_A RAB guanine nucleotide 51.7 1.5E+02 0.0051 27.4 16.7 123 133-289 15-145 (154)
74 1ik9_A DNA repair protein XRCC 50.7 1.7E+02 0.0057 28.0 11.8 80 160-244 125-209 (213)
75 1m1j_B Fibrinogen beta chain; 50.6 2.6E+02 0.0089 29.9 15.6 20 136-155 98-117 (464)
76 3tnu_A Keratin, type I cytoske 50.2 1.3E+02 0.0044 26.2 10.7 66 137-212 37-103 (131)
77 3a7p_A Autophagy protein 16; c 50.0 1.1E+02 0.0036 28.5 9.9 21 283-303 113-133 (152)
78 3qh9_A Liprin-beta-2; coiled-c 50.0 80 0.0027 26.6 8.2 54 135-194 23-76 (81)
79 2l5g_B Putative uncharacterize 49.5 38 0.0013 25.4 5.5 31 208-238 7-37 (42)
80 3iv1_A Tumor susceptibility ge 48.8 1.2E+02 0.004 25.3 9.3 57 198-254 16-72 (78)
81 2i1j_A Moesin; FERM, coiled-co 48.4 21 0.00071 38.6 5.7 54 175-228 345-398 (575)
82 3fpp_A Macrolide-specific effl 48.3 61 0.0021 31.2 8.5 40 193-232 90-129 (341)
83 1kd8_B GABH BLL, GCN4 acid bas 48.3 30 0.001 25.1 4.6 31 274-304 2-32 (36)
84 2wt7_A Proto-oncogene protein 48.3 47 0.0016 25.8 6.3 27 185-211 22-48 (63)
85 1f5n_A Interferon-induced guan 47.7 2.1E+02 0.0071 31.1 13.4 9 97-105 256-264 (592)
86 1kd8_A GABH AIV, GCN4 acid bas 47.5 25 0.00085 25.6 4.1 28 274-301 2-29 (36)
87 3i00_A HIP-I, huntingtin-inter 47.3 62 0.0021 28.6 7.6 74 134-216 18-91 (120)
88 1deq_A Fibrinogen (alpha chain 46.9 2.8E+02 0.0096 29.2 14.8 26 335-360 180-205 (390)
89 4h22_A Leucine-rich repeat fli 46.8 43 0.0015 29.3 6.4 49 169-217 41-89 (103)
90 1gd2_E Transcription factor PA 46.5 75 0.0026 25.7 7.4 56 224-299 14-69 (70)
91 1hjb_A Ccaat/enhancer binding 46.4 47 0.0016 28.0 6.4 40 185-227 35-74 (87)
92 2f1m_A Acriflavine resistance 46.3 60 0.0021 30.3 8.0 37 196-232 77-113 (277)
93 1ci6_A Transcription factor AT 45.0 56 0.0019 25.6 6.3 26 185-210 22-47 (63)
94 1t2k_D Cyclic-AMP-dependent tr 44.8 48 0.0016 25.5 5.8 28 185-212 21-48 (61)
95 3nmd_A CGMP dependent protein 44.6 71 0.0024 26.3 7.0 22 170-191 38-59 (72)
96 3tnu_A Keratin, type I cytoske 44.4 1.6E+02 0.0055 25.7 12.7 25 184-208 36-60 (131)
97 1dh3_A Transcription factor CR 44.3 32 0.0011 26.4 4.7 29 185-213 21-49 (55)
98 4gkw_A Spindle assembly abnorm 43.3 2E+02 0.0068 26.4 21.1 24 329-352 142-165 (167)
99 3mq7_A Bone marrow stromal ant 43.2 1.8E+02 0.0063 26.0 11.2 20 273-292 85-104 (121)
100 3ghg_A Fibrinogen alpha chain; 42.8 2.1E+02 0.007 31.4 12.1 16 222-237 115-130 (562)
101 1x8y_A Lamin A/C; structural p 42.2 1.2E+02 0.004 25.0 8.1 27 186-212 28-54 (86)
102 1jnm_A Proto-oncogene C-JUN; B 42.2 36 0.0012 26.3 4.8 28 185-212 21-48 (62)
103 3efg_A Protein SLYX homolog; x 42.0 51 0.0017 27.0 5.8 39 171-209 13-51 (78)
104 4emc_A Monopolin complex subun 42.0 91 0.0031 29.8 8.3 24 187-210 14-37 (190)
105 4abm_A Charged multivesicular 41.8 1.2E+02 0.0041 24.8 8.1 22 234-255 58-79 (79)
106 3tnu_B Keratin, type II cytosk 41.7 1.7E+02 0.0059 25.3 13.6 28 183-210 33-60 (129)
107 2xdj_A Uncharacterized protein 40.6 58 0.002 27.1 6.0 29 275-303 29-57 (83)
108 2akf_A Coronin-1A; coiled coil 40.5 31 0.0011 24.2 3.6 24 136-159 4-27 (32)
109 1ci6_A Transcription factor AT 40.4 86 0.0029 24.4 6.7 31 269-299 19-49 (63)
110 3tnu_B Keratin, type II cytosk 39.9 1.9E+02 0.0064 25.1 11.5 67 136-212 34-101 (129)
111 2dgc_A Protein (GCN4); basic d 39.7 35 0.0012 26.9 4.3 29 185-213 29-57 (63)
112 2e7s_A RAB guanine nucleotide 39.5 96 0.0033 28.2 7.8 25 135-159 5-29 (135)
113 2yy0_A C-MYC-binding protein; 39.5 41 0.0014 25.8 4.6 29 276-304 22-50 (53)
114 3trt_A Vimentin; cytoskeleton, 39.4 1.4E+02 0.0047 23.5 9.9 26 274-299 50-75 (77)
115 1ic2_A Tropomyosin alpha chain 38.7 59 0.002 26.3 5.7 39 176-214 31-69 (81)
116 3bas_A Myosin heavy chain, str 38.6 1.7E+02 0.0057 24.2 10.2 23 186-208 35-57 (89)
117 3nmd_A CGMP dependent protein 38.2 65 0.0022 26.5 5.8 31 173-203 20-50 (72)
118 3jsv_C NF-kappa-B essential mo 37.8 1.5E+02 0.0053 25.4 8.3 76 174-256 11-89 (94)
119 1jcd_A Major outer membrane li 37.5 1.4E+02 0.0048 23.0 7.5 40 185-227 10-49 (52)
120 2lw1_A ABC transporter ATP-bin 37.5 1.1E+02 0.0037 25.0 7.3 26 186-211 22-47 (89)
121 1gmj_A ATPase inhibitor; coile 36.7 1E+02 0.0036 26.0 7.0 27 268-294 53-79 (84)
122 3u1c_A Tropomyosin alpha-1 cha 36.7 1.9E+02 0.0065 24.3 14.3 47 188-234 4-54 (101)
123 3mq7_A Bone marrow stromal ant 36.6 2.3E+02 0.008 25.3 12.6 35 222-256 23-60 (121)
124 4dnd_A Syntaxin-10, SYN10; str 36.6 2.2E+02 0.0077 25.1 9.8 65 169-233 64-128 (130)
125 1wle_A Seryl-tRNA synthetase; 36.5 2.4E+02 0.0083 30.1 11.6 24 188-211 79-102 (501)
126 3m48_A General control protein 36.4 35 0.0012 24.4 3.4 25 275-299 2-26 (33)
127 1l8d_A DNA double-strand break 36.0 1.8E+02 0.0063 24.0 10.1 24 138-161 17-40 (112)
128 3qh9_A Liprin-beta-2; coiled-c 35.9 1.6E+02 0.0054 24.8 7.9 17 185-201 25-41 (81)
129 3m91_A Proteasome-associated A 35.4 1.2E+02 0.004 23.3 6.5 32 279-310 8-39 (51)
130 2oxj_A Hybrid alpha/beta pepti 34.6 46 0.0016 23.9 3.8 26 274-299 2-27 (34)
131 4dk0_A Putative MACA; alpha-ha 33.9 62 0.0021 31.4 6.1 30 199-228 97-126 (369)
132 1hjb_A Ccaat/enhancer binding 33.7 1.7E+02 0.0059 24.5 7.9 39 270-308 33-71 (87)
133 2efr_A General control protein 33.5 2.9E+02 0.0098 25.4 23.2 60 242-304 77-136 (155)
134 1wt6_A Myotonin-protein kinase 33.4 1.9E+02 0.0064 24.3 8.0 31 204-234 18-48 (81)
135 3cl3_D NF-kappa-B essential mo 33.2 1E+02 0.0034 28.0 6.7 81 143-223 4-92 (130)
136 4etp_A Kinesin-like protein KA 33.1 1.1E+02 0.0037 31.6 8.0 24 393-417 243-266 (403)
137 2eqb_B RAB guanine nucleotide 32.2 2.4E+02 0.0084 24.2 10.9 40 185-224 11-50 (97)
138 2dq0_A Seryl-tRNA synthetase; 32.2 1.1E+02 0.0037 32.2 7.9 23 189-211 41-63 (455)
139 1nkp_B MAX protein, MYC proto- 31.8 1.3E+02 0.0043 24.2 6.6 11 243-253 20-30 (83)
140 2k48_A Nucleoprotein; viral pr 31.6 2.2E+02 0.0076 25.0 8.4 25 270-294 79-103 (107)
141 3qne_A Seryl-tRNA synthetase, 31.4 1.1E+02 0.0036 32.8 7.8 40 278-320 76-115 (485)
142 3qne_A Seryl-tRNA synthetase, 31.2 1.2E+02 0.0042 32.4 8.2 11 365-375 276-286 (485)
143 1wii_A Hypothetical UPF0222 pr 30.8 21 0.00072 29.9 1.9 9 358-366 70-78 (85)
144 2wvr_A Geminin; DNA replicatio 30.1 1.6E+02 0.0053 28.6 7.9 43 189-231 118-160 (209)
145 2hy6_A General control protein 29.6 70 0.0024 23.0 4.0 26 274-299 2-27 (34)
146 2dq0_A Seryl-tRNA synthetase; 29.5 1E+02 0.0034 32.4 7.2 40 278-320 74-113 (455)
147 2j5u_A MREC protein; bacterial 29.4 27 0.00091 33.9 2.6 35 197-231 23-57 (255)
148 1gu4_A CAAT/enhancer binding p 29.3 1.5E+02 0.0052 24.3 6.7 35 270-304 33-67 (78)
149 1wt6_A Myotonin-protein kinase 29.0 2.6E+02 0.0088 23.5 8.8 17 218-234 46-62 (81)
150 1zxa_A CGMP-dependent protein 28.5 53 0.0018 26.6 3.8 29 168-196 21-49 (67)
151 1ses_A Seryl-tRNA synthetase; 28.5 1.7E+02 0.0058 30.3 8.6 24 188-211 37-60 (421)
152 3q0x_A Centriole protein; cent 28.3 2.3E+02 0.008 27.5 8.9 55 171-225 163-217 (228)
153 2zuo_A MVP, major vault protei 27.6 7.6E+02 0.026 28.5 19.5 52 149-207 667-718 (861)
154 2ve7_A Kinetochore protein HEC 27.1 61 0.0021 32.4 4.8 24 193-216 185-208 (315)
155 4fla_A Regulation of nuclear P 26.5 3.7E+02 0.012 24.4 11.1 54 191-244 77-130 (152)
156 3q8t_A Beclin-1; autophagy, AT 26.5 2.9E+02 0.0098 23.2 13.3 28 283-310 63-90 (96)
157 4etp_A Kinesin-like protein KA 26.3 1.8E+02 0.0061 30.0 8.2 6 376-381 150-155 (403)
158 1l8d_A DNA double-strand break 25.8 2.8E+02 0.0095 22.8 10.2 27 320-346 64-90 (112)
159 3a5t_A Transcription factor MA 25.8 9.8 0.00034 33.3 -1.0 72 226-304 18-89 (107)
160 1gu4_A CAAT/enhancer binding p 25.8 1.3E+02 0.0046 24.7 5.8 26 186-211 36-61 (78)
161 2wt7_B Transcription factor MA 25.8 3E+02 0.01 23.3 8.8 30 179-209 35-64 (90)
162 1s94_A S-syntaxin; three helix 25.8 3.6E+02 0.012 24.1 10.7 37 218-254 75-111 (180)
163 2w6a_A ARF GTPase-activating p 24.8 1.5E+02 0.005 23.8 5.6 22 185-206 40-61 (63)
164 2yy0_A C-MYC-binding protein; 24.7 1.2E+02 0.0039 23.3 4.9 30 280-309 19-48 (53)
165 1f5n_A Interferon-induced guan 24.7 7E+02 0.024 27.0 13.8 12 325-336 572-583 (592)
166 3uux_B Mitochondrial division 24.6 4.7E+02 0.016 25.8 10.3 19 185-203 176-194 (242)
167 1uii_A Geminin; human, DNA rep 24.4 2E+02 0.007 24.2 6.7 20 188-207 55-74 (83)
168 1ez3_A Syntaxin-1A; three heli 23.9 3.1E+02 0.011 22.7 12.1 33 221-253 47-79 (127)
169 3lay_A Zinc resistance-associa 23.9 1.6E+02 0.0056 27.3 6.7 33 223-255 73-105 (175)
170 3m9b_A Proteasome-associated A 23.7 93 0.0032 30.9 5.3 20 188-207 56-75 (251)
171 3u06_A Protein claret segregat 23.7 1.5E+02 0.0051 30.8 7.1 52 174-235 5-56 (412)
172 3ryc_E Stathmin-4; alpha-tubul 23.6 4.3E+02 0.015 24.2 13.2 95 186-293 43-138 (143)
173 1m1j_C Fibrinogen gamma chain; 23.6 6.5E+02 0.022 26.3 13.4 34 205-238 36-69 (409)
174 4f61_I Stathmin-like domain R4 23.1 5.5E+02 0.019 25.3 17.7 111 187-309 43-159 (240)
175 1gk7_A Vimentin; intermediate 22.8 1.6E+02 0.0056 21.2 5.1 26 185-210 12-37 (39)
176 1ses_A Seryl-tRNA synthetase; 22.6 2.8E+02 0.0095 28.7 8.9 39 279-320 70-108 (421)
177 2wq1_A General control protein 22.5 1.3E+02 0.0046 21.4 4.4 25 275-299 2-26 (33)
178 1xaw_A Occludin; coiled-coil, 22.4 2.6E+02 0.009 25.4 7.6 65 172-236 59-128 (140)
179 2zqm_A Prefoldin beta subunit 22.3 3.2E+02 0.011 22.4 11.2 40 183-222 10-49 (117)
180 1i6z_A BAG-family molecular ch 22.0 4.5E+02 0.015 23.9 9.2 77 263-352 11-88 (135)
181 3c3f_A Alpha/beta peptide with 21.3 1.5E+02 0.005 21.3 4.4 26 274-299 2-27 (34)
182 3ni0_A Bone marrow stromal ant 21.1 4.1E+02 0.014 23.0 10.7 68 223-293 17-87 (99)
183 1gk4_A Vimentin; intermediate 21.1 3.3E+02 0.011 22.0 10.8 24 187-210 27-50 (84)
184 3iox_A AGI/II, PA; alpha helix 20.6 8.3E+02 0.028 26.4 14.7 24 214-237 13-36 (497)
185 3lss_A Seryl-tRNA synthetase; 20.6 4.6E+02 0.016 28.0 10.2 21 191-211 49-69 (484)
186 2r2v_A GCN4 leucine zipper; co 20.5 1.5E+02 0.0053 21.2 4.4 27 274-300 2-28 (34)
187 3c3g_A Alpha/beta peptide with 20.5 1.2E+02 0.0041 21.6 3.8 25 275-299 2-26 (33)
188 3m9b_A Proteasome-associated A 20.5 1E+02 0.0034 30.6 4.8 20 275-294 77-96 (251)
189 4fla_A Regulation of nuclear P 20.0 4.9E+02 0.017 23.6 11.6 46 212-257 70-115 (152)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.17 E-value=0.099 Score=50.57 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+..||.++.++-.....++.+..++..++.
T Consensus 106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333333
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.02 E-value=0.03 Score=64.59 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKD 277 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~ 277 (520)
|...+..|++.+.++.. .|+.....++.|+.+++........++..|+..+..|+..+.+ .+.....++.
T Consensus 919 l~~~~~~LE~kl~eLq~---rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e-------~~~~~~~v~~ 988 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQR---KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-------AKNATNRVLS 988 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 33444444444444332 2333333444444443333333333444444444444443322 2222233455
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVE 344 (520)
|+.|+.+|+.....+..|+..|-.+.+..+..+ .+.|...+.+...||+..+||..++.
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L--------~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHET--------EQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665555555544444443222 24455555555556655555554333
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.93 E-value=0.17 Score=48.32 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
...||...|.....++.+=..|+.+|-||-. -=.+||.+|. .+|..+..++.-|+..+.+|.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe------sSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~--------- 69 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQE------GSRELEAELE---AQLVQAEQRNRDLQADNQRLK--------- 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
Confidence 3678999999999999999999999999965 2456666653 456666666666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111 216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE 295 (520)
Q Consensus 216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E 295 (520)
.|++.||.|+...+..... ++..|+..+..|.... ..|-..+++|-..|..|+-.
T Consensus 70 -~E~e~~k~K~~~~~~e~~~-------~~~~Lq~el~~l~~~~-----------------~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 70 -YEVEALKEKLEHQYAQSYK-------QVSVLEDDLSQTRAIK-----------------EQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHH
Confidence 4567777777666655444 4555555555555432 23444556666778888888
Q ss_pred HHHHHHhHHHHHHHH
Q 046111 296 KRELLVKLDAAESKI 310 (520)
Q Consensus 296 K~eL~~kL~~AE~~~ 310 (520)
.|..+.-|+..++++
T Consensus 125 ~R~~~~SleD~e~kl 139 (189)
T 2v71_A 125 KRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 888888777777765
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.76 E-value=0.0056 Score=70.66 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=12.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 179 RQLKIKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 179 ~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
.+|.....++..+...+..|+.+...|+.++.
T Consensus 899 ~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ 930 (1184)
T 1i84_S 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILH 930 (1184)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444443333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.57 E-value=0.34 Score=46.80 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=27.1
Q ss_pred hhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHH
Q 046111 164 YYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 164 y~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~ 233 (520)
++.|++-.+.+..|+.++..--.+|..|...+..++..-..+..++.+.. .+..+++.++.+++..+.++
T Consensus 10 L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333333333333333333332222 22233334444444444444
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.50 E-value=0.098 Score=60.47 Aligned_cols=111 Identities=24% Similarity=0.313 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSS-YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDV 266 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~-~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~ 266 (520)
|..|..++..++.+|..|++.+..+. +...|....+..+.+|+.. ..+...+++++..|.+++..++..=.+..+--.
T Consensus 930 l~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~ 1008 (1080)
T 2dfs_A 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008 (1080)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555443222 2334444444444444442 444445555666666666665554444443333
Q ss_pred HHHHHHhhH-HhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 267 ELEKKLKSV-KDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 267 E~EkKl~~l-~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
+++.+.+.+ .+|+..|..|+..|..|+.+..+|
T Consensus 1009 ~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 244444444444444444444444
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.34 E-value=0.0094 Score=68.82 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhh-------cchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 138 RELERLRSLVLELQEREV----KLEGELLEYY-------GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~----~LE~eLLEy~-------~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
.-+..+...|+....|.. +|-.++-.+. .|++....+.+|+..|......+..+..++..|+.+...++
T Consensus 819 ~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 819 ESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655532 3322222211 22223334444555555444455555555555555555555
Q ss_pred HHHH
Q 046111 207 EQIA 210 (520)
Q Consensus 207 ~qv~ 210 (520)
.++.
T Consensus 899 ~~L~ 902 (1184)
T 1i84_S 899 EKLQ 902 (1184)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4433
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.23 E-value=0.69 Score=59.07 Aligned_cols=181 Identities=18% Similarity=0.238 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHH
Q 046111 149 ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS----SYVKKELEVARN 224 (520)
Q Consensus 149 eLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~ 224 (520)
++.++-.+|+.=|- -|.|....|.+|+.+|..+..++..-+.+.+.+=.+-..=++++.+- ....++++....
T Consensus 1914 el~~~~~rl~~GL~---KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A 1914 QLEEEQLHLNIGLK---KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333 35666667777777777766666555444443322222222222211 122223333334
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 225 KIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 225 Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
++...+...+.+..++.=- .=+++++..+++. .....+.+..+-..|++|+.++.+|+..-.++..||..|....+
T Consensus 1991 ei~~~k~~~e~dL~~A~Pa-~Pkr~~l~~ae~~---l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 1991 EIAVQKVKAYADLEKAEPT-GPLREEVEQLENA---ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHCC--------CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443332100 2244555544433 23344456666667788888888888888888888888877777
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111 305 AAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM 348 (520)
Q Consensus 305 ~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~ 348 (520)
.++.++ .+|..-++.|-.++.+-..++++|+.
T Consensus 2067 ~~~~kl------------~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2067 KVKNKV------------DRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHHhhhhccccHHHHHHHHHH
Confidence 666654 34555566777777777777776654
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.19 E-value=0.65 Score=41.56 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eL 161 (520)
..++..+...+..|...-..++.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.51 E-value=5.4 Score=38.03 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=55.4
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111 127 KVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 127 ~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
..|-..-..+.+.+..|+.-..++++==.-||.+|-. .|...+.....|+..+.--..|++.++.|......+..
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~--eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~--- 87 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA--QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY--- 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3343444555677777777777777766666666521 23334555666666666666666666666655555522
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 207 EQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 207 ~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
.....+..|+...+..+..|+++|.
T Consensus 88 ---~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 88 ---KQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444555555554443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.36 E-value=5.2 Score=51.48 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.2
Q ss_pred HHHHHHHHhhcccchhhHH
Q 046111 339 LLKQVEGLQMNRFGEVEEL 357 (520)
Q Consensus 339 L~kqVEqLq~dR~seVEEL 357 (520)
|...+.+=+..|-..+++|
T Consensus 2078 Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2078 LLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccHHHHHHHH
Confidence 4445555555565555554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.85 E-value=3 Score=43.42 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+.+||....+.++...+|+.|+..+..++..-+.++
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666677777777776666666555544
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.42 E-value=1.6 Score=45.58 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH-----------hhhhhHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL-----------KIKTVEIDMLNITINSLQAERKK 204 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L-----------~~k~~Ei~~L~~kI~sLEsEn~R 204 (520)
...|+..++..|..|+++....+..+-.... .+.+....+ ..-..++..+..++..++.++++
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~------~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 527 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHA------EIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA 527 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4557777777777777776665554432221 111111111 11123344445555666666666
Q ss_pred HHHHH----HhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 205 LQEQI----AQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 205 L~~qv----~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
++.++ .++..+.+|.+..+.+++..++++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 66655 344444444444444444444333
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.94 E-value=6.1 Score=34.74 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhhHHHH
Q 046111 244 LLLLKQQVSGLQAKEE 259 (520)
Q Consensus 244 i~~Lkq~V~~Lq~~Ee 259 (520)
+.-.-++...|.+...
T Consensus 64 l~e~EE~~~~L~~~k~ 79 (129)
T 2fxo_A 64 LADAEERCDQLIKNKI 79 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3334444444444443
No 15
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.69 E-value=0.47 Score=39.68 Aligned_cols=74 Identities=30% Similarity=0.456 Sum_probs=47.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH--HHHHHHHHhhhhh-------cHHHHHHHHHHhhccc
Q 046111 281 EVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV--AKAREEVNNLRHA-------NDDLLKQVEGLQMNRF 351 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V--a~a~eE~~~LR~~-------NEdL~kqVEqLq~dR~ 351 (520)
|+.+||+....+..+|.-|...++.++..+..+-.--|+++. ..++.++..||.. .-||-.+||.|+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~---- 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ---- 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence 356777777777777777777777776655444333344433 2334555555554 345888888886
Q ss_pred chhhHHHHHH
Q 046111 352 GEVEELVYLR 361 (520)
Q Consensus 352 seVEELVYLR 361 (520)
+||.|||
T Consensus 77 ---eEl~fLk 83 (86)
T 3swk_A 77 ---EEIAFLK 83 (86)
T ss_dssp ---HHHHHHT
T ss_pred ---HHHHHHh
Confidence 7899887
No 16
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=90.46 E-value=1.8 Score=41.67 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046111 190 MLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV 251 (520)
Q Consensus 190 ~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V 251 (520)
.|..+...|+.+..+|.+++.++...+.++|.. |=.|+-...|.=|..|+.|++++
T Consensus 143 ~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~------L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 143 HLQKENERLLRDWNDVQGRFEKAVSAKEALETD------LYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555667777777788888888888877753 44555555555566666666554
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.28 E-value=12 Score=35.14 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHh-------h
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAI-------K 263 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~-------~ 263 (520)
++.+...--.-..||+.+.+++.+....++. .+++|+-++... ..+-..|.+.++.||+.=.... .
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~---~~rELq~~~~~L----~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMSKSISQLES---LNRELQERNRIL----ENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445555555555555554443 345555444433 2344566667766666542221 1
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
.-.+++. ++..|..|+..+|-.-..++.+|+.|..|+..-|.
T Consensus 91 ~~~elq~---ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 91 MIGDLQA---RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233443 35668888888888888888888888888776654
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.59 E-value=10 Score=33.31 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 046111 338 DLLKQVEGLQM 348 (520)
Q Consensus 338 dL~kqVEqLq~ 348 (520)
+|-++++.+..
T Consensus 115 ~Lk~~led~e~ 125 (129)
T 2fxo_A 115 ELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.38 E-value=20 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
..+..-.++..|++.|.+|+.+.+++-.++..|.+.+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3455556777788888888888888888888776654
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.01 E-value=19 Score=33.33 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVEq 345 (520)
+.||+.|+.+-..+-.-|+.|.+|+..
T Consensus 100 N~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 100 NNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877777777777777776653
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.79 E-value=6.2 Score=33.60 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH----HHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN----KIKELQRQIQLD 236 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~----Kir~Lqkk~~~~ 236 (520)
+..++....-...+|..|..+|..|+.+-.+++..+.+......+-+.... .+..|+|||+..
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555667788889999999999988888888877666665555554 777788877753
No 22
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.62 E-value=3.7 Score=35.03 Aligned_cols=81 Identities=26% Similarity=0.311 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 046111 226 IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDA 305 (520)
Q Consensus 226 ir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~ 305 (520)
+++|.+.+ ..-+++++..|||+=-.|+-++.. .+| =.+|++...+||.++..|.+....|..|+..+..-+++
T Consensus 8 VreLN~~L---~gls~eev~~lKq~RRtlKNRgyA--q~C--R~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 8 VRELNRHL---RGFTKDEVIRLKQKRRTLKNRGYA--QSC--RYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHhhhhhHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 367889999999998888888854 334 34788888999999999999999999999999887777
Q ss_pred HHHHHhhc
Q 046111 306 AESKIASL 313 (520)
Q Consensus 306 AE~~~~~l 313 (520)
...+...|
T Consensus 81 ~k~k~~~L 88 (90)
T 2wt7_B 81 YKVKSEKL 88 (90)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 76666544
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.02 E-value=12 Score=38.12 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH
Q 046111 217 KELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQ 293 (520)
Q Consensus 217 ~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ 293 (520)
..-..+++...+||+||. ...-+.+.|...----|..|++-=+. +.-.-.+++++||.||.+|-...+++.
T Consensus 390 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 390 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA------EKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666677777664 44455666666555556666543211 111122467777777766544444333
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.30 E-value=11 Score=34.03 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHH-HHHhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHh
Q 046111 188 IDMLNITINSLQAE--RKKLQE-QIAQSS--YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAI 262 (520)
Q Consensus 188 i~~L~~kI~sLEsE--n~RL~~-qv~e~~--~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~ 262 (520)
+..++.+|..+... +.++.. .++-.+ -+.-|+-.++.++..|..++... ..++-.||..+..++.+-
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~----~kE~~~lK~el~~~~~k~---- 105 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK----DKEIYDLKHELIAAQIKA---- 105 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----
Confidence 34556666666633 555542 222222 24556666666666666555543 445555666555544443
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
..+..++.+|++.+..||.++..|-..|
T Consensus 106 -------------e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 106 -------------ESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777664333
No 25
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.53 E-value=11 Score=31.27 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
..+|.+++-||+-...+-.-+.+|-.|+++-..
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999777665443
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.35 E-value=11 Score=32.77 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYG 166 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~ 166 (520)
++.+|..||..|..+.---.+|+.++--...
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999888777788777654443
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.28 E-value=12 Score=31.32 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
+-.||..+...-..|..|.++|+-|..+|..|..++.+...
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777767777888888888888888888877666444
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.97 E-value=31 Score=32.37 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=24.5
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHHH----HhHHHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKRELL----VKLDAAESKI 310 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~----~kL~~AE~~~ 310 (520)
.++..++.+...|--....|+.++..+- .+|-+++.++
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345566666666666677777776666 6677777654
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.10 E-value=29 Score=35.40 Aligned_cols=64 Identities=23% Similarity=0.175 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a 237 (520)
+....++|++....+.+.+....+|..|.+|++|++..+.++.. +++.|+.+.+.+-.+-+..|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL---ALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh---hhHhcccHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555444332 33344444444444433333
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.39 E-value=33 Score=31.63 Aligned_cols=95 Identities=23% Similarity=0.300 Sum_probs=58.0
Q ss_pred HHHHhhhhHHHHHHhhhhHHHHHHHh----hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHH
Q 046111 248 KQQVSGLQAKEEEAIKKDVELEKKLK----SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVA 323 (520)
Q Consensus 248 kq~V~~Lq~~Eee~~~~d~E~EkKl~----~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va 323 (520)
.+.+-.|+..+.....+....+.++. .+++-|.-+..--|....||.+...|-.+|.++..+...+ .+...
T Consensus 55 ~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i-----~~eLd 129 (155)
T 2efr_A 55 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI-----SEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34444566666666666555555443 3566666777777888888888888888888776554222 22233
Q ss_pred HHHHHHHhhhhhcHHHHHHHHHHh
Q 046111 324 KAREEVNNLRHANDDLLKQVEGLQ 347 (520)
Q Consensus 324 ~a~eE~~~LR~~NEdL~kqVEqLq 347 (520)
.+-.+++.+-.-|..|-++|-.|+
T Consensus 130 ~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 130 QLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHhh
Confidence 344555555555666666666654
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.97 E-value=25 Score=30.44 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVEq 345 (520)
+.||+.++.+-..+-.-|+.|..||..
T Consensus 68 N~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 68 NNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 679999988888888888888877753
No 32
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=79.61 E-value=30 Score=29.96 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=48.1
Q ss_pred hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046111 165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELE 220 (520)
Q Consensus 165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe 220 (520)
--+++|-..+..|.++|..+..++..|+..+..++.++..+...+.++.+-+..|.
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999988876666555544
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.48 E-value=19 Score=30.40 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH----HHHHHHHHHHHH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR----NKIKELQRQIQL 235 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar----~Kir~Lqkk~~~ 235 (520)
++....-...+|.-|..+|..|+.+-.+.+..+.....-..+-+..+ ..+..|+|+|+.
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567777888888888888777777766554443333333 366677777664
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.40 E-value=25 Score=29.60 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAA 306 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A 306 (520)
.|.++.+||+....+..+|..|...++..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888886666643
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.99 E-value=22 Score=30.97 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
..+|.+++-||+...+.-.-+-+|-.+++
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 34677777777777666666666644444
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.35 E-value=11 Score=33.30 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHH
Q 046111 281 EVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344 (520)
Q Consensus 281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVE 344 (520)
...+|+..|.+|..|..++-.|+..+.... ...+...+.|+..||+.|+.|.+.|-
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~--------~~~~~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQS--------YKQVSVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888776543 22334456778888888888765443
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.13 E-value=30 Score=29.14 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=30.1
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
....+|.+|..|++.+..|+.+......+|..|...+
T Consensus 38 ~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 38 RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999888888888777655
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.10 E-value=51 Score=36.01 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 046111 336 NDDLLKQVEGLQMNRFGEVEELVYLRWVN 364 (520)
Q Consensus 336 NEdL~kqVEqLq~dR~seVEELVYLRWVN 364 (520)
-+++.|||||+-.-..--++..=||.=+.
T Consensus 178 Y~~~QKQLeQv~a~dL~p~~~~q~Lp~lK 206 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDLLPSRDRQHLPLIK 206 (562)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCCC------
T ss_pred HHHHHHHHHHHhhcccCCccccccchhcc
Confidence 36699999999887777777777776554
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.83 E-value=5.9 Score=32.19 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=25.9
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+.|-+.|++||..|.+|...+..|+.|+..|-..+.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567888999999888888877777766644333
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.02 E-value=33 Score=31.20 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHH
Q 046111 192 NITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKK 271 (520)
Q Consensus 192 ~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkK 271 (520)
+++|..|+.+-.+-+.-+.....=..+.+.+-.......+-+..-.-..-..+..|-.++......-+++-++..++..|
T Consensus 2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RK 81 (147)
T 2b9c_A 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK 81 (147)
T ss_dssp ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555566555544433333222222222222222222222333333444455556555555555555566677777776
Q ss_pred HhhH----HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 272 LKSV----KDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 272 l~~l----~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
+..+ ..-|..+...-....+|+.+.+.+.-.|.+-++
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6542 223445555666677777777777666666554
No 41
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.60 E-value=27 Score=28.37 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=31.2
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 273 KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
++...+|.+|..|.+.+..|+.+....--+|..|+.++
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999888888888887665
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.24 E-value=48 Score=29.15 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111 216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE 295 (520)
Q Consensus 216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E 295 (520)
.-|++.||.|++..++ .+-.++..|+..+..|...... |=..+++|-..|.+|+-.
T Consensus 16 ~~E~e~~k~K~~~~~~-------e~~~~~~~Lq~El~~lr~~~~~-----------------l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 16 KYEVEALKEKLEHQYA-------QSYKQVSVLEDDLSQTRAIKEQ-----------------LHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhchHHHHH
Confidence 3445556665554433 3334566666666666655433 334456667788888888
Q ss_pred HHHHHHhHHHHHHHH
Q 046111 296 KRELLVKLDAAESKI 310 (520)
Q Consensus 296 K~eL~~kL~~AE~~~ 310 (520)
.|.-+.=|...|+++
T Consensus 72 ~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 72 KRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 888888777777765
No 43
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.74 E-value=11 Score=28.31 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
+++.+||.+.+........|..+|+.|+.||.-|+.-
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5677888888877778888999999999999988753
No 44
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.77 E-value=19 Score=31.90 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
+..|++|+.-|..|+..=-++ +-|...+|..|++++..-..+++.-+...-..-.||..|+.++.......
T Consensus 14 D~~Ie~Lkreie~lk~ele~l---------~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM---------KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777665432222 23445556666666666556655555555555566666666665544333
Q ss_pred H
Q 046111 217 K 217 (520)
Q Consensus 217 ~ 217 (520)
.
T Consensus 85 ~ 85 (120)
T 3i00_A 85 E 85 (120)
T ss_dssp C
T ss_pred h
Confidence 3
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.42 E-value=23 Score=32.22 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhhhhhcHHHHHHHH
Q 046111 319 SEKVAKAREEVNNLRHANDDLLKQVE 344 (520)
Q Consensus 319 ~~~Va~a~eE~~~LR~~NEdL~kqVE 344 (520)
+.||+.|+.+-..+-.-|+.|..|+.
T Consensus 88 N~MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 88 NNLVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888877777776666666665543
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.42 E-value=83 Score=31.92 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH----HhhhhHHHHHHHhhHHhHHHHH
Q 046111 207 EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEE----AIKKDVELEKKLKSVKDLEVEV 282 (520)
Q Consensus 207 ~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee----~~~~d~E~EkKl~~l~~LE~Ev 282 (520)
.-+.....+.+=|+.+..+++.+=.+....+ +.+.--..|++++...|+.=.. +..+.- +-+.-..-||.+|
T Consensus 363 ~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 363 NAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH---TVMALMASLDAEK 438 (471)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch---hHHHHHHHHHHHH
Confidence 3333334455555555555555544444443 3334455566666666554322 112211 1112223466666
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHh
Q 046111 283 VELKRKNKELQIEKRELLVKLDAAESKIA 311 (520)
Q Consensus 283 ~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~ 311 (520)
..-.+..++|+-|.-+|-.+|..+++++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 439 AQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66556667777777777777777776653
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.43 E-value=36 Score=30.53 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
..|+..++..+..|+..=..+ --|.|.||.+ +..++-.+.....++..|..++..|+.++.+|+..+
T Consensus 67 adEl~k~~~~~~~L~~~l~~~---~kE~~~lK~e---l~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENK---DKEIYDLKHE---LIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554322222 2233444442 223333444444444555555555555555554433
No 48
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.46 E-value=66 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046111 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV 251 (520)
Q Consensus 195 I~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V 251 (520)
...|+.+...|+.++......+. .|...++.-.+.++.|+..|..++
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~----------~Le~~w~~k~E~~k~qV~~L~~~~ 54 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQ----------ELEDFIKQSSEDSSHQISALVLRA 54 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444444444 444445555556666655555544
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=67.11 E-value=54 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 182 KIKTVEIDMLNITINSLQAERKKLQE----QIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 182 ~~k~~Ei~~L~~kI~sLEsEn~RL~~----qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
..-.+||+.|+.+-..|..++.-++. -..+...+..|...|..+|+.|=.|+
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455566666666666666655554 33444556667777888877776654
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.01 E-value=31 Score=26.54 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
+|...+.+||.+|..|...|..|+.+...|...+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888888887777766664333
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.52 E-value=28 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 184 KTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
.+.++..|..+|.+|+.||.+|..++..+-.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558889999999999999999988776543
No 52
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.78 E-value=71 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 046111 177 LQRQLKIKTVEIDMLNITINSLQA 200 (520)
Q Consensus 177 Le~~L~~k~~Ei~~L~~kI~sLEs 200 (520)
.|..|..+..+|+.|..+|..++.
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666665555555
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.21 E-value=9.9 Score=33.00 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=38.5
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH----HH-----HHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDA----AE-----SKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG 345 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~----AE-----~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEq 345 (520)
+..|-.++.+|++-|.+|-.+|..|-.+|.- .+ .++--+.+-+-......+++++..|+..++.|..-|-.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666665555543 11 12223344333444345678888877777776655544
Q ss_pred H
Q 046111 346 L 346 (520)
Q Consensus 346 L 346 (520)
|
T Consensus 94 l 94 (100)
T 1go4_E 94 M 94 (100)
T ss_dssp C
T ss_pred H
Confidence 3
No 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.19 E-value=12 Score=40.40 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREV 155 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~ 155 (520)
..||...+..-++=+.|-.
T Consensus 299 ~~e~qqm~~~a~e~~~~~~ 317 (575)
T 2i1j_A 299 TIDVQQMKAQAREEKLAKQ 317 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4667777766655544433
No 55
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=64.06 E-value=5.1 Score=27.69 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
+.|+.-+.+|++||+.|.+.+.++.+-
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999988877653
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.40 E-value=80 Score=27.90 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhhH
Q 046111 241 KGQLLLLKQQVSGLQA 256 (520)
Q Consensus 241 K~qi~~Lkq~V~~Lq~ 256 (520)
-+.|-+|++||.-...
T Consensus 61 lE~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 61 METVPVLKAQADIYKA 76 (110)
T ss_dssp HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678888888877544
No 57
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.63 E-value=65 Score=26.65 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 259 ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
+++...+.++.+--..+...+....+|...+..|..+|.+|...|..|+-+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~ 64 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDK 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344445555555555566677778888888999999999998776555543
No 58
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=60.96 E-value=51 Score=28.79 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=18.7
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKR 297 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~ 297 (520)
++.+|+.||..||+-|..|-.|+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877653
No 59
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.96 E-value=15 Score=29.03 Aligned_cols=41 Identities=37% Similarity=0.381 Sum_probs=31.2
Q ss_pred HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 046111 260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVK 302 (520)
Q Consensus 260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~k 302 (520)
++++++- ++|...+.+||.+|.+|...|..|..+...|...
T Consensus 19 eAArrsR--~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 19 EAARRSR--ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 5778889999999999999999988877776443
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.67 E-value=62 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=24.7
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
.+|...+.+|+.+|..|...|..|+.+...|
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999988888888888776655
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.60 E-value=52 Score=29.05 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111 285 LKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349 (520)
Q Consensus 285 LRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d 349 (520)
+...+.+=..+-.+|..+...+|+.+..+... =+.....+.+.+..|-...+.++.++..||.+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~-fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQG-LSQAKRDVQEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666666666666666666655443332 12233344566777777777777777777765
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.24 E-value=1.2e+02 Score=28.19 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
....|..|+.....|+.|=..|+.+ |++....+..|.-++..-+.+...+..++..|+.||..|=+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeee------l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEV------IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777666666666554 45566667777777777777777777777777777766543
No 63
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.72 E-value=22 Score=27.58 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=26.4
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~ 300 (520)
++|...+.+||.+|.+|...|..|..+...|.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999988888888777663
No 64
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=56.59 E-value=23 Score=31.79 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhccc
Q 046111 298 ELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRF 351 (520)
Q Consensus 298 eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~ 351 (520)
.|.-|||....+.++.....+.++++....|.+. |.++|++|+.-|-
T Consensus 14 ~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~-------l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 14 RLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT-------LEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3444555555555555666678899877777766 8999999886553
No 65
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=55.96 E-value=22 Score=29.42 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
+-.|..|+..+.+++.-.+.|+..|=+|-=||.-|++.+..
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999887654
No 66
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=54.43 E-value=74 Score=26.19 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAE 201 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsE 201 (520)
.+|.+.|..+..||+.|+.-|++|.+-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~K 32 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSK 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998764
No 67
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.69 E-value=46 Score=29.11 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~ 242 (520)
..|-|+=..-.=+|+.|+.+++-+++....++.+..+.. .+++.-|-.+..|+.++.....+-++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~---re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN---KEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667888888888888888887777666653 34555555566666555554444333
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=53.15 E-value=1e+02 Score=25.87 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v 215 (520)
+-.-+...-.-|+.|++.=..|++++-.+++ +.. .-+.. .-..+|..|+..|..+..++.+|.-++.. +
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~---~~~--~~~~~---~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn---l 82 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKG---QGK--SRLGD---LYEEEMRELRRQVDQLTNDKARVEVERDN---L 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccC--CCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3344555556788888888888888877664 221 11221 23567888889999999999988887765 5
Q ss_pred HHHHHHHHHH
Q 046111 216 KKELEVARNK 225 (520)
Q Consensus 216 ~~ELe~ar~K 225 (520)
..+++..|.|
T Consensus 83 ~~~~~~~k~K 92 (93)
T 3s4r_A 83 AEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5566655554
No 69
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.54 E-value=1.1e+02 Score=25.90 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111 139 ELERLRSLVLELQEREVKLEGELLEY 164 (520)
Q Consensus 139 EI~~Lr~lVeeLqERE~~LE~eLLEy 164 (520)
++..|..-+..|+.-|.+|-.+|.+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~l 30 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDV 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776665543
No 70
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.52 E-value=1.7e+02 Score=30.63 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 046111 138 RELERLRSLVLELQE 152 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqE 152 (520)
..|..|..+|.++..
T Consensus 38 ~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 38 GELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444443
No 71
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.39 E-value=42 Score=25.70 Aligned_cols=31 Identities=42% Similarity=0.404 Sum_probs=24.1
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELL 300 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~ 300 (520)
.|..-+.+||.+|..|...|..|..+...|.
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445688999999888888888888777764
No 72
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=51.80 E-value=1e+02 Score=25.61 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 227 KELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 227 r~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
..|+++++-...|+.+++..|++-=..|......+ +. .+..|+.|..+|.....-|+.-+.||
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL-------~~---mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKL-------EE---MVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888877777766665331 11 13445555555555444444444444
No 73
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.70 E-value=1.5e+02 Score=27.39 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=65.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
..+++.++..+|.-+..++.|-..|+..=-+|.. |+.+ ......+..+|.+.+.+-
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----------l~~~--------------~~~~~~e~~~L~~~l~~E 70 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----------LKRE--------------LSDRDDEVKRLREDIAKE 70 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----------HHTH--------------HHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--------------HhhhhHHHHHHHHHHHHH
Confidence 4567888999999998888887777653222222 2222 233445555555555555
Q ss_pred HhHHHHHHHHHHH----HHHHHHHHHHHH----HhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHH
Q 046111 213 SYVKKELEVARNK----IKELQRQIQLDA----NQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVE 284 (520)
Q Consensus 213 ~~v~~ELe~ar~K----ir~Lqkk~~~~a----~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~E 284 (520)
...+.+.|..+.+ +..|-.-+=.+| ..++.+-..+..++..|+.+-.+ +-..+..|...+.+
T Consensus 71 ~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e----------~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 71 NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE----------KDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 5554444444433 233333332222 23444555556666665554322 22335667777777
Q ss_pred HHHHh
Q 046111 285 LKRKN 289 (520)
Q Consensus 285 LRr~N 289 (520)
|+...
T Consensus 141 LK~v~ 145 (154)
T 2ocy_A 141 LKKVM 145 (154)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 77654
No 74
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.66 E-value=1.7e+02 Score=27.97 Aligned_cols=80 Identities=20% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 160 ELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA-----QSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 160 eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~-----e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
+|+++|+.. +..|+.++..-+.+.+.|...+..|.++.+++-..=. =|.+-+-=|-.=|.|||.||.++-
T Consensus 125 elfd~~~~~-----~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 125 ELIAYALDT-----IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555522 3344444444444444555555555444443332111 122333335556788888888887
Q ss_pred HHHHhhHHHH
Q 046111 235 LDANQTKGQL 244 (520)
Q Consensus 235 ~~a~q~K~qi 244 (520)
..+.+....+
T Consensus 200 ~~~~~~~~~~ 209 (213)
T 1ik9_A 200 NAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 7776665443
No 75
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.63 E-value=2.6e+02 Score=29.86 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREV 155 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~ 155 (520)
....|..|+..|.+|.....
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhh
Confidence 45667888888877755543
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.17 E-value=1.3e+02 Score=26.24 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
..||..||..|..| +.++--..+++.. +..+.++|.+. ..++..+..+|..|+++..+++.+++..
T Consensus 37 k~Ei~elrr~iq~L-------~~el~~l~~~~~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 37 KSEISELRRTMQNL-------EIELQSQLSMKASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp ----CHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444 4444333333222 23344444443 3456667777777777777776655543
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.05 E-value=1.1e+02 Score=28.45 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhH
Q 046111 283 VELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 283 ~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
..+...+..||.||..|+.|+
T Consensus 113 n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455554444443
No 78
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.01 E-value=80 Score=26.55 Aligned_cols=54 Identities=30% Similarity=0.466 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 046111 135 DNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNIT 194 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k 194 (520)
++-+||..||--|.+|..--.--| .-||-.-+.+..|+.+|..+.++|..|...
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyE------kKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYE------WKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567888888888887754222111 123333344555555555555555554433
No 79
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.54 E-value=38 Score=25.37 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.9
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 208 QIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 208 qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
-+..+.+|-.|++.++.+|..||+|++..-+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888876543
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.81 E-value=1.2e+02 Score=25.32 Aligned_cols=57 Identities=16% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
|.+....-++++.-+.....||..-+.||..+=.+++.+......-|..|+.+-..|
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778888888888888888888887777777777766666666655444
No 81
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.36 E-value=21 Score=38.59 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 046111 175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKE 228 (520)
Q Consensus 175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~ 228 (520)
..+|.+....+.++..-..++..|+++.++.+++...+..-+.+++.++.+++.
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 345 RQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555555555555555555555555444444443
No 82
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.34 E-value=61 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 046111 193 ITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQ 232 (520)
Q Consensus 193 ~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk 232 (520)
..+...+.+-+|.+...........+++.++..+...+.+
T Consensus 90 ~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~ 129 (341)
T 3fpp_A 90 AELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQ 129 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666677777776665544433
No 83
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.31 E-value=30 Score=25.14 Aligned_cols=31 Identities=35% Similarity=0.275 Sum_probs=23.1
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+++.||..|+||-..|..|+.|-.-|-..|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4577888888888888888888776654443
No 84
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.30 E-value=47 Score=25.83 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
...+..|..++..|+.+|..|..++..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888899999888887754
No 85
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.72 E-value=2.1e+02 Score=31.12 Aligned_cols=9 Identities=44% Similarity=0.826 Sum_probs=4.9
Q ss_pred CCcchhhHH
Q 046111 97 EDILPEFED 105 (520)
Q Consensus 97 ~~llpef~~ 105 (520)
+.|=|+|-.
T Consensus 256 ~~L~peF~~ 264 (592)
T 1f5n_A 256 EELDPEFVQ 264 (592)
T ss_dssp GGSCHHHHH
T ss_pred hhCCHHHHH
Confidence 445566653
No 86
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.50 E-value=25 Score=25.56 Aligned_cols=28 Identities=36% Similarity=0.334 Sum_probs=19.2
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELLV 301 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~ 301 (520)
+++.||.+|+||=..|..|+.|-.-|-.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3466777787777777777777665533
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.29 E-value=62 Score=28.62 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=41.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
..+..||+.|+.-++.++..-.+.=.+|. ..|..|+.+|.............-+.|..+...|+.......
T Consensus 18 e~Lkreie~lk~ele~l~~E~q~~v~ql~---------~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~ 88 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKTESQRVVLQLK---------GHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTE 88 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34567777777777776666655555442 235566666666665555555555566666666655555554
Q ss_pred hHH
Q 046111 214 YVK 216 (520)
Q Consensus 214 ~v~ 216 (520)
.+.
T Consensus 89 ~~q 91 (120)
T 3i00_A 89 KAQ 91 (120)
T ss_dssp ---
T ss_pred HHH
Confidence 444
No 88
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.87 E-value=2.8e+02 Score=29.16 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=16.8
Q ss_pred hcHHHHHHHHHHhhcccchhhHHHHH
Q 046111 335 ANDDLLKQVEGLQMNRFGEVEELVYL 360 (520)
Q Consensus 335 ~NEdL~kqVEqLq~dR~seVEELVYL 360 (520)
.+++..||++|+.....--....=||
T Consensus 180 ~ye~qqKQL~qv~a~~llP~~~~q~l 205 (390)
T 1deq_A 180 DYKNQQKQLEQVIAINLLPSRDIQYL 205 (390)
T ss_pred HHHHHHHHHHhhhhhccccccccccc
Confidence 45678888888876665555554444
No 89
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.76 E-value=43 Score=29.25 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 046111 169 EQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKK 217 (520)
Q Consensus 169 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ 217 (520)
|++-.+.++.+++..|..+++.+...+..|+.+..-|++++.+-..+..
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577788888888999999999999999999999999988665544
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.47 E-value=75 Score=25.70 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 224 NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 224 ~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
..+|.-|+-+. ..-+++|..|..+|..|+... ..|..|...||..+..|+.|+..|
T Consensus 14 ~qNR~AQRafR---eRK~~~i~~LE~~v~~le~~~-----------------~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 14 AQNRAAQRAFR---KRKEDHLKALETQVVTLKELH-----------------SSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555544 233456666677776655432 235677778888888888877654
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.35 E-value=47 Score=27.96 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIK 227 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir 227 (520)
......+..++..|+.||..|+.+|.+ +..|+...|.-+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~---L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQ---LSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 334455677888888888888888774 4455555554443
No 92
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=46.31 E-value=60 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 046111 196 NSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQ 232 (520)
Q Consensus 196 ~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk 232 (520)
...+.+-+|.+...........+++.++..+...+.+
T Consensus 77 ~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~ 113 (277)
T 2f1m_A 77 NIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAA 113 (277)
T ss_dssp HHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555566666666655544433
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.03 E-value=56 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
..++..|..++..|+.+|..|..++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666665553
No 94
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.76 E-value=48 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...+..|..++..|+.+|..|..++..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777778888887777766543
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.64 E-value=71 Score=26.28 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHhhhhhHHHHH
Q 046111 170 QESDIVELQRQLKIKTVEIDML 191 (520)
Q Consensus 170 QEa~v~ELe~~L~~k~~Ei~~L 191 (520)
++..|.+|+.+|..+..+|..|
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 96
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.43 E-value=1.6e+02 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111 184 KTVEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 184 k~~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
...||..++..|.+|+.|...+..+
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555444443
No 97
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=44.26 E-value=32 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
..-++.|..++..|+.||..|..++..+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788899999999988877654
No 98
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=43.32 E-value=2e+02 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=15.7
Q ss_pred HHhhhhhcHHHHHHHHHHhhcccc
Q 046111 329 VNNLRHANDDLLKQVEGLQMNRFG 352 (520)
Q Consensus 329 ~~~LR~~NEdL~kqVEqLq~dR~s 352 (520)
...|..+||.+..-+---+.-||+
T Consensus 142 FE~LkvENE~vkerl~mYR~QRfs 165 (167)
T 4gkw_A 142 FEKLSMENENLKEKIAHYRAQRFS 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhhhhHhHHHHHHHHHHhccC
Confidence 456777777777666666666665
No 99
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.22 E-value=1.8e+02 Score=25.99 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=10.0
Q ss_pred hhHHhHHHHHHHHHHHhHHH
Q 046111 273 KSVKDLEVEVVELKRKNKEL 292 (520)
Q Consensus 273 ~~l~~LE~Ev~ELRr~Nk~L 292 (520)
+.|++.+.||+.||+-|-.|
T Consensus 85 q~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 85 HKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhh
Confidence 34455555555555544433
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.77 E-value=2.1e+02 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 046111 222 ARNKIKELQRQIQLDA 237 (520)
Q Consensus 222 ar~Kir~Lqkk~~~~a 237 (520)
.+.+|-.|+.+|+...
T Consensus 115 LRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 101
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.21 E-value=1.2e+02 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
.++..+...|..|+++..+++.++...
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666665554433
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.15 E-value=36 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...+..|..++..|+.+|..|..++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666544
No 103
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.04 E-value=51 Score=27.04 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
+..+.+||-+|+-....|+.|+..|...+.+..+|+.++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555555555444443
No 104
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.01 E-value=91 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
+++.-..-|..|+.||..|..++.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455668888888888877765
No 105
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=41.83 E-value=1.2e+02 Score=24.84 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHHhhhh
Q 046111 234 QLDANQTKGQLLLLKQQVSGLQ 255 (520)
Q Consensus 234 ~~~a~q~K~qi~~Lkq~V~~Lq 255 (520)
.....++-+++..|-++|..|+
T Consensus 58 E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 58 EKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4666777788888888777653
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.67 E-value=1.7e+02 Score=25.30 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 183 IKTVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 183 ~k~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
....||..++..|.+|+.|...|..+-+
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3345555566666655555554444433
No 107
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.60 E-value=58 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKRELLVKL 303 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL 303 (520)
+..|..||..||=.+.+++++...+..+.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554433
No 108
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.51 E-value=31 Score=24.20 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 136 NARELERLRSLVLELQEREVKLEG 159 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~ 159 (520)
+++++..|...|++||+|=-+||-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888874
No 109
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.38 E-value=86 Score=24.45 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=22.2
Q ss_pred HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 269 EKKLKSVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++|...+..|+.++.+|...|.+|..+...|
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788888877777777777666555
No 110
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.87 E-value=1.9e+02 Score=25.11 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111 136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS 212 (520)
Q Consensus 136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~ 212 (520)
...||..||..|..| +.++--..+++.. +..+.++|.+. ..++..+..+|..|+++..+++.+++..
T Consensus 34 ~k~Ei~elrr~iq~L-------~~el~~l~~~~~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 34 TKHEISEMNRMIQRL-------RAEIDNVKKQCANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356677777666554 3444333333222 23344444443 3456677777888888777777665544
No 111
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.71 E-value=35 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSS 213 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~ 213 (520)
...+..|..++..|+.+|..|..++..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888777665543
No 112
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.54 E-value=96 Score=28.17 Aligned_cols=25 Identities=4% Similarity=-0.008 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 135 DNARELERLRSLVLELQEREVKLEG 159 (520)
Q Consensus 135 ~~~~EI~~Lr~lVeeLqERE~~LE~ 159 (520)
+++.++..+|..+...+.|...++.
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666665
No 113
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.45 E-value=41 Score=25.83 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 276 KDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
..|-.|..+||..+..|+.+..+|..||.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777766654
No 114
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.38 E-value=1.4e+02 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=18.0
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
.++.-..|+.||||....|+.|...|
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677888888888887765443
No 115
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.67 E-value=59 Score=26.32 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 176 ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
+.+.+......+|.-|.++|..||.+-.+.++.+.....
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455667777888888888877777776655443
No 116
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.55 E-value=1.7e+02 Score=24.17 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 046111 186 VEIDMLNITINSLQAERKKLQEQ 208 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~q 208 (520)
.....|..+...|..+...|..+
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555
No 117
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.24 E-value=65 Score=26.52 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 046111 173 DIVELQRQLKIKTVEIDMLNITINSLQAERK 203 (520)
Q Consensus 173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~ 203 (520)
.|++|+..|..+..||......|..|+.+-.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666655555555554444433
No 118
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.82 E-value=1.5e+02 Score=25.43 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQA---ERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ 250 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEs---En~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~ 250 (520)
+..-|.-|..+...|+.|..+|..++. ...-|++|+.-|. ..+.+-|+ =+-++..+-++-..++..|+.+
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~---~DF~aERa----dREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK---ADFQAERH----AREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHhHHHHHHHHHHHHHHH
Confidence 445566677788888888888888773 4444555554442 33333222 1223333334444566666666
Q ss_pred HhhhhH
Q 046111 251 VSGLQA 256 (520)
Q Consensus 251 V~~Lq~ 256 (520)
+..|..
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 666654
No 119
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.55 E-value=1.4e+02 Score=23.01 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIK 227 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir 227 (520)
..+|..|+-+|..|.++-.-|+..+. .+..|-++|..+|.
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~---~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQ---AAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 55667777777777777776666544 66676666666654
No 120
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.46 E-value=1.1e+02 Score=25.02 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
-|++.|..+|..|+.+...|++++++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677888888888888888888875
No 121
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.73 E-value=1e+02 Score=25.96 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHhhHHhHHHHHHHHHHHhHHHHH
Q 046111 268 LEKKLKSVKDLEVEVVELKRKNKELQI 294 (520)
Q Consensus 268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~ 294 (520)
+..-.+.|+.||.++.-.+...+.|..
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444556666666666666665544
No 122
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.72 E-value=1.9e+02 Score=24.33 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH----HHHHHHHHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEV----ARNKIKELQRQIQ 234 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~----ar~Kir~Lqkk~~ 234 (520)
++....||..|.-+.....+.+.++-.-.++++. +-..|..|++|++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556677777777766666665555443333333 2244455555554
No 123
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.64 E-value=2.3e+02 Score=25.32 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhH
Q 046111 222 ARNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQA 256 (520)
Q Consensus 222 ar~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~ 256 (520)
-++.-..|+.++..- ..++.+|...-.+-|..|.+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~ 60 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 60 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677666533 44455555555555555543
No 124
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=36.61 E-value=2.2e+02 Score=25.12 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 046111 169 EQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI 233 (520)
Q Consensus 169 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~ 233 (520)
|-...-.||++-|..-.-.++.|...|...+..-.++.=...++..=+.=+...|.+|+.++..|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556778888888888999999999998887766653222233333333444555555555443
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.53 E-value=2.4e+02 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
-..+..++..|+++.+.+..++..
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666554
No 126
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.37 E-value=35 Score=24.36 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
+..||..|+||-..|.+|+.|-.-|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3568899999999999988886655
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.02 E-value=1.8e+02 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 138 RELERLRSLVLELQEREVKLEGEL 161 (520)
Q Consensus 138 ~EI~~Lr~lVeeLqERE~~LE~eL 161 (520)
.+|..|+.....++.+-..++..+
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 128
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.87 E-value=1.6e+02 Score=24.80 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAE 201 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsE 201 (520)
--||..|+.+|+.|+.|
T Consensus 25 ~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 25 LQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666655443
No 129
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.36 E-value=1.2e+02 Score=23.30 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 279 EVEVVELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 279 E~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
+....+|++.+..|-..|..|+.-|..|..+|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567899999999999999988888777655
No 130
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.65 E-value=46 Score=23.88 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=20.9
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++..||..|+||=..|.+|+.|..-|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45678888888888888888887666
No 131
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.86 E-value=62 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 046111 199 QAERKKLQEQIAQSSYVKKELEVARNKIKE 228 (520)
Q Consensus 199 EsEn~RL~~qv~e~~~v~~ELe~ar~Kir~ 228 (520)
+.+-+|++...........+++.++..+..
T Consensus 97 ~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~ 126 (369)
T 4dk0_A 97 LSNYQRLSKLYGQKATSLDTLNTAKATLNN 126 (369)
T ss_dssp TTTHHHHHHGGGSSCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 132
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.74 E-value=1.7e+02 Score=24.49 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES 308 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~ 308 (520)
++-.+-.+++.+|.+|.+.|..|..+...|...+..-..
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666777777777776666666555554443
No 133
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.51 E-value=2.9e+02 Score=25.41 Aligned_cols=60 Identities=27% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 242 GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 242 ~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
.+|..|..++-..+.+-+.+-+...-+++- |.+||.++..-+..++.++.+......-|.
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~---id~lEd~L~~~Kek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKS---IDDLEDELYAQKLKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333322 455677776666677766666655444443
No 134
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.38 E-value=1.9e+02 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=16.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111 204 KLQEQIAQSSYVKKELEVARNKIKELQRQIQ 234 (520)
Q Consensus 204 RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~ 234 (520)
.|++++.--..+.+||...|.-+-.++++++
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 135
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=33.17 E-value=1e+02 Score=27.96 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhh----HHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111 143 LRSLVLELQEREVKLEGELLEYYGLKEQES----DIVELQRQLKI----KTVEIDMLNITINSLQAERKKLQEQIAQSSY 214 (520)
Q Consensus 143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa----~v~ELe~~L~~----k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~ 214 (520)
.-+++.+|+|+..+|+.=..+-..|++.-- .+..++.++.. -.++||.|.+.+.+++++.+==+.-+.+--.
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998877666666655322 23344555543 4688999999999999887633333333333
Q ss_pred HHHHHHHHH
Q 046111 215 VKKELEVAR 223 (520)
Q Consensus 215 v~~ELe~ar 223 (520)
-.++|..|-
T Consensus 84 kLAqLQ~AY 92 (130)
T 3cl3_D 84 KLAQLQVAY 92 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 136
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.05 E-value=1.1e+02 Score=31.63 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=7.9
Q ss_pred chHHHHHHHHHHhhcCCCCCccCCC
Q 046111 393 KSQERAKQLMLEYAGSERGQVDTDL 417 (520)
Q Consensus 393 kSqekAKqLmleya~~e~~~~~~d~ 417 (520)
.|.+.+-+|| +.|..-|....|.+
T Consensus 243 ~s~~e~~~ll-~~g~~~R~~~~T~~ 266 (403)
T 4etp_A 243 ESEEMVEIIL-KKANKLRSTASTAS 266 (403)
T ss_dssp CCHHHHHHHH-HHHC--C----CHH
T ss_pred CCHHHHHHHH-HHHHHhcccccccC
Confidence 3444455544 33443343334443
No 137
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.24 E-value=2.4e+02 Score=24.25 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN 224 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~ 224 (520)
..++..|.......+.+..+|.+.+.+-...+.+.|..+.
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555665555555555554444443
No 138
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.22 E-value=1.1e+02 Score=32.18 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046111 189 DMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
..+..++..|+++.+.+..++..
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555543
No 139
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.78 E-value=1.3e+02 Score=24.19 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 046111 243 QLLLLKQQVSG 253 (520)
Q Consensus 243 qi~~Lkq~V~~ 253 (520)
-+..|+.-|-.
T Consensus 20 ~f~~Lr~lvP~ 30 (83)
T 1nkp_B 20 SFHSLRDSVPS 30 (83)
T ss_dssp HHHHHHTTSGG
T ss_pred HHHHHHHHCCC
Confidence 34444444443
No 140
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.59 E-value=2.2e+02 Score=24.98 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=15.8
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQI 294 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~ 294 (520)
.+-..+..|+.++.||+|...++..
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777776665543
No 141
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.44 E-value=1.1e+02 Score=32.83 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~ 320 (520)
|-.++.+|+...+.|+.+-.++..+|.. .+..++|++.++
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~---~l~~iPN~~~~~ 115 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRS---KINQVGNIVHES 115 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCcc
Confidence 4445556666666666666666555552 355678887544
No 142
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.24 E-value=1.2e+02 Score=32.37 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.8
Q ss_pred HHHHHHHhhcC
Q 046111 365 ACLRYELRNYQ 375 (520)
Q Consensus 365 ACLR~ELrn~~ 375 (520)
.|-|+|...|.
T Consensus 276 ~cfR~Eag~~G 286 (485)
T 3qne_A 276 SCFRREAGSHG 286 (485)
T ss_dssp EEECSCCC---
T ss_pred ccccCCCCCCC
Confidence 47888776554
No 143
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.77 E-value=21 Score=29.94 Aligned_cols=9 Identities=56% Similarity=1.560 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 046111 358 VYLRWVNAC 366 (520)
Q Consensus 358 VYLRWVNAC 366 (520)
||=.||.||
T Consensus 70 VYs~WiDac 78 (85)
T 1wii_A 70 VYSDWIDAC 78 (85)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 344444444
No 144
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.10 E-value=1.6e+02 Score=28.63 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
+.|...|..|+.|...|..+..++..+.++....-.-|..|-.
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555556555555555555566655555555555443
No 145
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.62 E-value=70 Score=22.98 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=19.6
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
+++.||..|+||=..|..|+.|-.-|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678888888888888888776655
No 146
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.51 E-value=1e+02 Score=32.39 Aligned_cols=40 Identities=30% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~ 320 (520)
|-.++.+|+...+.|+.+-.++..+|.. .+..++|++.++
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ipN~~~~~ 113 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY---YLWRLPNITHPS 113 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCcc
Confidence 4445566666666666666666665543 355678887544
No 147
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.36 E-value=27 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 197 SLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 197 sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
.|.+||++|+++++++.....+++..+.++..|++
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666666666666666555555544
No 148
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.25 E-value=1.5e+02 Score=24.33 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 270 KKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 270 kKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
++-....+++..|.+|.+.|..|+.+...|...+.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777777666644444
No 149
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.05 E-value=2.6e+02 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046111 218 ELEVARNKIKELQRQIQ 234 (520)
Q Consensus 218 ELe~ar~Kir~Lqkk~~ 234 (520)
+|..+..+++.|...|+
T Consensus 46 kL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544433
No 150
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.50 E-value=53 Score=26.62 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 046111 168 KEQESDIVELQRQLKIKTVEIDMLNITIN 196 (520)
Q Consensus 168 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~ 196 (520)
+.++..+.+||..|..+..+|..|+..+-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444433
No 151
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.47 E-value=1.7e+02 Score=30.26 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
-..+..++..|+++.+.+..++..
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555566666666655544
No 152
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.30 E-value=2.3e+02 Score=27.55 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046111 171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNK 225 (520)
Q Consensus 171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~K 225 (520)
+.+..-|-.++..-+.+...|+.++...++|+..+.++++++....+|+-.|--|
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455566666667788889999999999999999999998888877666544
No 153
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=27.58 E-value=7.6e+02 Score=28.49 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111 149 ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 149 eLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~ 207 (520)
.-||.+.+-+.+.+| |++ --.||+|--.-.++.+..+.++-.||+++...+.
T Consensus 667 ~sqEa~Ar~~A~~~e------Qea-~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves 718 (861)
T 2zuo_A 667 NSQEAAAKHEAQRLE------QEA-RGRLERQKILDQSEAEKARKELLELEAMSMAVES 718 (861)
T ss_dssp HHHHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH------HHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 567777777776654 444 4556666666677777777777778888777665
No 154
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.12 E-value=61 Score=32.38 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHH
Q 046111 193 ITINSLQAERKKLQEQIAQSSYVK 216 (520)
Q Consensus 193 ~kI~sLEsEn~RL~~qv~e~~~v~ 216 (520)
..|++|++++.+|++++.++.+.+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777766664433
No 155
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.53 E-value=3.7e+02 Score=24.43 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQL 244 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi 244 (520)
++.....|.+=|.||.+++.+-..+..-|+.+..-.+..-.+.+..++..|...
T Consensus 77 veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 77 VDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888888777777777766666666555555555555444
No 156
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.50 E-value=2.9e+02 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111 283 VELKRKNKELQIEKRELLVKLDAAESKI 310 (520)
Q Consensus 283 ~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~ 310 (520)
..+++...+++.+..-|-.++.-|+.++
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666555544
No 157
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.25 E-value=1.8e+02 Score=29.98 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=3.2
Q ss_pred CCCCCc
Q 046111 376 APAGKT 381 (520)
Q Consensus 376 ~p~gk~ 381 (520)
+-+|||
T Consensus 150 TGSGKT 155 (403)
T 4etp_A 150 TGSGKT 155 (403)
T ss_dssp TTSSHH
T ss_pred CCCCCc
Confidence 445555
No 158
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.84 E-value=2.8e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111 320 EKVAKAREEVNNLRHANDDLLKQVEGL 346 (520)
Q Consensus 320 ~~Va~a~eE~~~LR~~NEdL~kqVEqL 346 (520)
.++.....+...++..=.+|..++..|
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556665544444455444444
No 159
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.82 E-value=9.8 Score=33.30 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111 226 IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD 304 (520)
Q Consensus 226 ir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~ 304 (520)
+++|.+.+ ..=+++++..||++=-.++-++.. .+| =.+|+..+.+||.++..|......|..|+..|..-++
T Consensus 18 v~elN~~L---~~Ls~~e~~~lK~~RR~lKNR~yA--q~C--R~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 18 VRELNQHL---RGLSKEEIIQLKQRRRTLKNRGYA--ASC--RVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp HHHHHHTT---TTCCHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHhhhhHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554 245678888888887777766643 333 2477777888888887777777777777666654444
No 160
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.81 E-value=1.3e+02 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e 211 (520)
.....+..++..|+.||..|+.+|..
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888899999988888774
No 161
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.81 E-value=3e+02 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 179 RQLKIKTVEIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 179 ~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
|+..+.+-....+. .+..||.++..|+.++
T Consensus 35 NRgyAq~CR~Kr~~-q~~~LE~e~~~L~~e~ 64 (90)
T 2wt7_B 35 NRGYAQSCRYKRVQ-QKHHLENEKTQLIQQV 64 (90)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33334444444442 2345555555554443
No 162
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=25.76 E-value=3.6e+02 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111 218 ELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254 (520)
Q Consensus 218 ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L 254 (520)
.....+.++..|...+...+++.|..|..|++.+...
T Consensus 75 ~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 75 TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567777777777777777777777777666544
No 163
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.84 E-value=1.5e+02 Score=23.82 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQ 206 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~ 206 (520)
..|+..+..+|..||+||..|+
T Consensus 40 s~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 40 SDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhhc
Confidence 4566667777777777776664
No 164
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.69 E-value=1.2e+02 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111 280 VEVVELKRKNKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 280 ~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
.+|..||+-|.+|+....+|..+++...++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555544443
No 165
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.67 E-value=7e+02 Score=27.05 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=6.4
Q ss_pred HHHHHHhhhhhc
Q 046111 325 AREEVNNLRHAN 336 (520)
Q Consensus 325 a~eE~~~LR~~N 336 (520)
+..|++.|++.+
T Consensus 572 ~~~ei~~l~~~~ 583 (592)
T 1f5n_A 572 MKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 345566655543
No 166
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.58 E-value=4.7e+02 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERK 203 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~ 203 (520)
..||..+..||+.|+.-.+
T Consensus 176 ~sEI~EID~KI~~L~~mR~ 194 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKE 194 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666677766655444
No 167
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.40 E-value=2e+02 Score=24.19 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~ 207 (520)
|+.+...|..|..+|..|++
T Consensus 55 ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666554
No 168
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.92 E-value=3.1e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111 221 VARNKIKELQRQIQLDANQTKGQLLLLKQQVSG 253 (520)
Q Consensus 221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~ 253 (520)
..+.++..+-..+...++..|..|-.|++.+..
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777777777777666554
No 169
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.90 E-value=1.6e+02 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 046111 223 RNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQ 255 (520)
Q Consensus 223 r~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq 255 (520)
+.+++.|..+.+......++++...++++..|-
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666666555555443
No 170
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.69 E-value=93 Score=30.85 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQE 207 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~ 207 (520)
+..|...+..|++.|++|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~ 75 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLME 75 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 171
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.67 E-value=1.5e+02 Score=30.76 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 046111 174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235 (520)
Q Consensus 174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~ 235 (520)
...|+.+|.....+++.+..+|..+++++..+.+++.+ .-.+-|.|+++++.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~----------~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ----------SNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 45666666666666666777777777777666655433 23344555555543
No 172
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=23.63 E-value=4.3e+02 Score=24.20 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 046111 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIK-ELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKK 264 (520)
Q Consensus 186 ~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir-~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~ 264 (520)
.-++.+..++..-++..+.+++++-.. |..-|..++ .||+.+..+.+..+.-=..|.+++..... .+
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea~~lk~------laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kE------nR 110 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEAELLKH------LAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE------NR 110 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hH
Confidence 334455566666666666666665333 344444433 34444444443333333333444333222 24
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHhHHHH
Q 046111 265 DVELEKKLKSVKDLEVEVVELKRKNKELQ 293 (520)
Q Consensus 265 d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ 293 (520)
.+-+...+.++++-+.-+.|.|+ |++++
T Consensus 111 eA~laal~erLkek~kha~eVrr-~Ke~~ 138 (143)
T 3ryc_E 111 EAHLAAMLERLQEKDKHAEEVRK-NKELK 138 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence 44555566667777777777755 55544
No 173
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.56 E-value=6.5e+02 Score=26.29 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 205 LQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238 (520)
Q Consensus 205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~ 238 (520)
+..++.++..++.|++...+.+..|.+.|+.-.+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555666666666666666665533
No 174
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=23.13 E-value=5.5e+02 Score=25.31 Aligned_cols=111 Identities=16% Similarity=0.304 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKEL-QRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~L-qkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d 265 (520)
-++.+..++..-++..+.+++++-.. |..-|..+++. |+.+..+.+.++.-=-.|.+++..... .+.
T Consensus 43 SleEIqkKLeAAEERRks~Ea~~lk~------laekrEhe~evlqKa~Een~~F~k~aeEkL~~KME~~kE------nRe 110 (240)
T 4f61_I 43 SLEEIQKKLEAAEERRKYQEAELLKH------LAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE------NRE 110 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHH
Confidence 34444555555555555555554433 33333344433 333333333333222223333322222 234
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHH-----hHHHHHHHHHHHHhHHHHHHH
Q 046111 266 VELEKKLKSVKDLEVEVVELKRK-----NKELQIEKRELLVKLDAAESK 309 (520)
Q Consensus 266 ~E~EkKl~~l~~LE~Ev~ELRr~-----Nk~LQ~EK~eL~~kL~~AE~~ 309 (520)
+-+...+.++++-+--|.+.|+. +.-.+.=..++-.||++|+.+
T Consensus 111 A~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeEr 159 (240)
T 4f61_I 111 AHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKEN 159 (240)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44445555666667777777764 333444566778888888864
No 175
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.82 E-value=1.6e+02 Score=21.23 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 185 TVEIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
+...-.+-.++..||.+|..|+.++.
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566788899999999988764
No 176
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.61 E-value=2.8e+02 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111 279 EVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320 (520)
Q Consensus 279 E~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~ 320 (520)
-.++.+|+...+.|+.+-.++..+|.. .+..++|++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ipN~~~~~ 108 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA---LLLQVPLPPWPG 108 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCCCC
Confidence 344555555555555555555555542 255688988554
No 177
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.46 E-value=1.3e+02 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++.||..|+||=..|..|+.|-.-|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567777877777777777765544
No 178
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=22.39 E-value=2.6e+02 Score=25.43 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH-----HHHHHHHHHHHHHHHHHH
Q 046111 172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKE-----LEVARNKIKELQRQIQLD 236 (520)
Q Consensus 172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~E-----Le~ar~Kir~Lqkk~~~~ 236 (520)
+...+|..+|..-+..+..|...+..|.......+.-+.+|..+..- +-..|.+|.-|+.||...
T Consensus 59 ~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHI 128 (140)
T 1xaw_A 59 QEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHI 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.34 E-value=3.2e+02 Score=22.37 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 046111 183 IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVA 222 (520)
Q Consensus 183 ~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~a 222 (520)
....+...+..++..|..+...|..++.++..+..||+..
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l 49 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445666677777777777777777777777777777654
No 180
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=22.00 E-value=4.5e+02 Score=23.86 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=42.4
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHH-HhhhhhcHHHHH
Q 046111 263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEV-NNLRHANDDLLK 341 (520)
Q Consensus 263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~-~~LR~~NEdL~k 341 (520)
+.++|.+-.++.++++|.-|..+-+...++..+-..+ -...-+.+.++.+-..+ -++.-.+|.+++
T Consensus 11 K~~peee~~lKkL~dveksv~~~~k~l~~l~~el~~i-------------ekGFL~k~l~~ea~~kl~Krik~~~E~~Mk 77 (135)
T 1i6z_A 11 KSNPEEEVELKKLKDLEVSAEKIANHLQELNKELSGI-------------QQGFLAKELQAEALCKLDRKVKATIEQFMK 77 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HTSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888887766555555444443333 11222333333332222 344556778888
Q ss_pred HHHHHhhcccc
Q 046111 342 QVEGLQMNRFG 352 (520)
Q Consensus 342 qVEqLq~dR~s 352 (520)
-+|+|-.=.+.
T Consensus 78 ~LE~LDs~~ip 88 (135)
T 1i6z_A 78 ILEEIDTMVLP 88 (135)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHhccccCC
Confidence 88877554443
No 181
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.30 E-value=1.5e+02 Score=21.34 Aligned_cols=26 Identities=8% Similarity=0.117 Sum_probs=17.2
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++..||..|++|=..|..|+.|-.-|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34567777777777777777665444
No 182
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.12 E-value=4.1e+02 Score=23.03 Aligned_cols=68 Identities=28% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH
Q 046111 223 RNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQ 293 (520)
Q Consensus 223 r~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ 293 (520)
|+--+.|++++..- ..++.+|...-.+-|..|.+-=... -+--.+...++++|+.||..|.....++.
T Consensus 17 rNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~ke---kaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 17 RNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKK---VSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677666543 3667778888888887776542221 11123334567888888877776555544
No 183
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.07 E-value=3.3e+02 Score=22.03 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQIA 210 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~ 210 (520)
++..+..+|..|+++-.+++.++.
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 184
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.62 E-value=8.3e+02 Score=26.44 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 046111 214 YVKKELEVARNKIKELQRQIQLDA 237 (520)
Q Consensus 214 ~v~~ELe~ar~Kir~Lqkk~~~~a 237 (520)
....||++.+..+..++..-+...
T Consensus 13 ~yq~elarvqkana~aka~Ye~~~ 36 (497)
T 3iox_A 13 AYQTELARVQKANADAKAAYEAAV 36 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 185
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.58 E-value=4.6e+02 Score=27.98 Aligned_cols=21 Identities=0% Similarity=-0.059 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 046111 191 LNITINSLQAERKKLQEQIAQ 211 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e 211 (520)
+..++..|+++.+.+..++..
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 186
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.54 E-value=1.5e+02 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=19.4
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111 274 SVKDLEVEVVELKRKNKELQIEKRELL 300 (520)
Q Consensus 274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~ 300 (520)
+++.||..|+||=..+..|+.|-.-|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456788888888777777777765553
No 187
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.51 E-value=1.2e+02 Score=21.64 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQIEKREL 299 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL 299 (520)
++.||..|+||=..|..|+.|-.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567778888777777777765544
No 188
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.46 E-value=1e+02 Score=30.62 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHHhHHHHH
Q 046111 275 VKDLEVEVVELKRKNKELQI 294 (520)
Q Consensus 275 l~~LE~Ev~ELRr~Nk~LQ~ 294 (520)
++.+..|+..||..+++|+.
T Consensus 77 Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666664
No 189
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.01 E-value=4.9e+02 Score=23.56 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111 212 SSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257 (520)
Q Consensus 212 ~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~ 257 (520)
...+.++++.|-..+.+..+++..+.+.=+.=+.+|..-..-.+..
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~ 115 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDV 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777666666666655544443
Done!