Query 046111
Match_columns 520
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 15:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046111.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046111hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 60.7 31 0.0023 26.1 16.1 22 142-163 19-40 (185)
2 d2ap3a1 a.24.27.1 (A:12-196) H 51.3 45 0.0033 25.1 14.1 22 137-158 4-25 (185)
3 d1ez3a_ a.47.2.1 (A:) Syntaxin 44.7 67 0.0049 25.2 11.9 66 187-252 11-76 (124)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 43.8 18 0.0013 28.5 5.6 33 188-220 10-42 (107)
5 d1f5na1 a.114.1.1 (A:284-583) 39.4 1.1E+02 0.0079 26.1 13.5 6 19-24 19-24 (300)
6 d1i4da_ a.238.1.2 (A:) Arfapti 36.8 97 0.007 24.7 21.1 38 331-369 153-190 (200)
7 d1aoaa2 a.40.1.1 (A:260-375) F 34.8 14 0.001 28.9 3.5 13 357-369 12-24 (116)
8 d1seta1 a.2.7.1 (A:1-110) Sery 32.0 1E+02 0.0076 23.7 9.4 11 310-320 98-108 (110)
9 d1dxxa1 a.40.1.1 (A:9-119) Dys 30.2 12 0.00091 29.4 2.4 17 353-369 7-23 (111)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 29.9 58 0.0043 23.3 6.1 62 278-344 2-63 (66)
11 d1wiia_ g.41.3.4 (A:) Hypothet 27.7 11 0.00077 30.0 1.5 9 358-366 70-78 (85)
12 d1aoaa1 a.40.1.1 (A:121-251) F 27.3 11 0.00077 30.9 1.5 19 351-369 1-19 (131)
13 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.1 1.5E+02 0.011 23.2 11.1 41 191-231 6-46 (133)
14 d1qvra2 c.37.1.20 (A:149-535) 24.6 1.5E+02 0.011 27.9 9.7 36 191-226 287-322 (387)
15 d1seta1 a.2.7.1 (A:1-110) Sery 23.5 1.5E+02 0.011 22.7 9.2 23 187-209 36-58 (110)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=60.65 E-value=31 Score=26.13 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 046111 142 RLRSLVLELQEREVKLEGELLE 163 (520)
Q Consensus 142 ~Lr~lVeeLqERE~~LE~eLLE 163 (520)
.+...+..+..+=..++.++..
T Consensus 19 ~~~~~~~~~~~k~~~~e~~~~~ 40 (185)
T d2ap3a1 19 DDEEPIKTVGKKIAELDEKKKK 40 (185)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 2
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=51.35 E-value=45 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046111 137 ARELERLRSLVLELQEREVKLE 158 (520)
Q Consensus 137 ~~EI~~Lr~lVeeLqERE~~LE 158 (520)
..+|..+...+..+.+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (185)
T d2ap3a1 4 KKEIKAYLKQVDKIKDDEEPIK 25 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444433
No 3
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=44.71 E-value=67 Score=25.17 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111 187 EIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS 252 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~ 252 (520)
+|+.....|..|+....+|+..=.............+.++..+-..+...++..|..|-.|++.+.
T Consensus 11 eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~ 76 (124)
T d1ez3a_ 11 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 76 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444443322222211223445677777777777777777777777777654
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=43.75 E-value=18 Score=28.46 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046111 188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELE 220 (520)
Q Consensus 188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe 220 (520)
+..+...+..+.+....|..++.++..+..+|+
T Consensus 10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555444
No 5
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.39 E-value=1.1e+02 Score=26.06 Aligned_cols=6 Identities=0% Similarity=0.063 Sum_probs=2.7
Q ss_pred HHhhhc
Q 046111 19 KQLNLK 24 (520)
Q Consensus 19 ~~~~~~ 24 (520)
.-+|+|
T Consensus 19 ~ain~g 24 (300)
T d1f5na1 19 NAISSG 24 (300)
T ss_dssp HHHHHT
T ss_pred HHHcCC
Confidence 334544
No 6
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.79 E-value=97 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=28.8
Q ss_pred hhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 046111 331 NLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRY 369 (520)
Q Consensus 331 ~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ 369 (520)
.+-+.|.+|..+|+.|+..|+.++-.-+ ...++|++.|
T Consensus 153 ~fe~~~~~~~~~l~~l~~~r~~~~~~~l-~~~~~~~~~f 190 (200)
T d1i4da_ 153 KYEKLRGDVAIKLKFLEENKIKVMHKQL-LLFHNAVSAY 190 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHH
Confidence 3345678999999999999998765532 4567888876
No 7
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.76 E-value=14 Score=28.86 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 046111 357 LVYLRWVNACLRY 369 (520)
Q Consensus 357 LVYLRWVNACLR~ 369 (520)
=++|+|||..|+.
T Consensus 12 ~~lL~WvN~~l~~ 24 (116)
T d1aoaa2 12 ELLLRWANFHLEN 24 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 3799999999854
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=31.96 E-value=1e+02 Score=23.67 Aligned_cols=11 Identities=0% Similarity=-0.179 Sum_probs=6.7
Q ss_pred HhhcCCCchhH
Q 046111 310 IASLSNMTESE 320 (520)
Q Consensus 310 ~~~lsnv~e~~ 320 (520)
+..++|++.++
T Consensus 98 ll~iPNi~~~~ 108 (110)
T d1seta1 98 LLQVPLPPWPG 108 (110)
T ss_dssp HTTCCCCCCTT
T ss_pred HHcCCCCCCcc
Confidence 45577877543
No 9
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.17 E-value=12 Score=29.35 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 046111 353 EVEELVYLRWVNACLRY 369 (520)
Q Consensus 353 eVEELVYLRWVNACLR~ 369 (520)
+|.+-+|.||||..|..
T Consensus 7 ~~Q~~~ft~WiN~~L~~ 23 (111)
T d1dxxa1 7 DVQKKTFTKWVNAQFSK 23 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc
Confidence 35667899999999973
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=29.95 E-value=58 Score=23.33 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHH
Q 046111 278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344 (520)
Q Consensus 278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVE 344 (520)
++.|+.-|.+....|+.+..-+..||+-- ..+.++| .++|...++-...+...-+.|..++.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~----~F~~kAP-~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASP----GFREKAP-KEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTST----THHHHSC-TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCh----HHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566556666666666666665666521 1233443 45665545544444443344444443
No 11
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.72 E-value=11 Score=29.99 Aligned_cols=9 Identities=56% Similarity=1.560 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 046111 358 VYLRWVNAC 366 (520)
Q Consensus 358 VYLRWVNAC 366 (520)
||=.||.||
T Consensus 70 VYs~WiDac 78 (85)
T d1wiia_ 70 VYSDWIDAC 78 (85)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 12
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.29 E-value=11 Score=30.92 Aligned_cols=19 Identities=26% Similarity=0.763 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 046111 351 FGEVEELVYLRWVNACLRY 369 (520)
Q Consensus 351 ~seVEELVYLRWVNACLR~ 369 (520)
|++-|+=+|.+|||..|+.
T Consensus 1 y~e~ek~~f~~WiN~~L~~ 19 (131)
T d1aoaa1 1 YSEEEKYAFVNWINKALEN 19 (131)
T ss_dssp CCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 4667888999999998875
No 13
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.05 E-value=1.5e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR 231 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk 231 (520)
|...+.-|+.+-..|++++..+.....|++.++.-++.|..
T Consensus 6 L~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 6 IVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444444444445555555555555543
No 14
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=24.63 E-value=1.5e+02 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046111 191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKI 226 (520)
Q Consensus 191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki 226 (520)
+...+..|+.+...|.++-........++-..+.++
T Consensus 287 le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~L 322 (387)
T d1qvra2 287 IEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL 322 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333333333333333
No 15
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=23.50 E-value=1.5e+02 Score=22.69 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046111 187 EIDMLNITINSLQAERKKLQEQI 209 (520)
Q Consensus 187 Ei~~L~~kI~sLEsEn~RL~~qv 209 (520)
+...+..++..|+++.+.+..++
T Consensus 36 ~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 36 EVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554
Done!