BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046115
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 50/241 (20%)
Query: 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVA-RIMGSTHVISVNVL---- 130
LL+LDDVW+ W LK + +IL+TTR ++V +MG +V+ V
Sbjct: 239 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 131 SEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRS-------- 182
+E S+F ++ K+ +L + I+K+CKG PL I +LLR
Sbjct: 290 KGLEILSLFVNM--------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 341
Query: 183 --KNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRK 240
+ K+++ I ++ ++ EA+++ + +S L +K ++ ++ KD +
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 241 HKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHD 300
L LW + +E+EDI +E+ N F D N G+ ++ +HD+ D
Sbjct: 398 KVLCILW-------DMETEEVEDILQEFVN---KSLLFCDRN----GKSFRYYLHDLQVD 443
Query: 301 F 301
F
Sbjct: 444 F 444
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 43/210 (20%)
Query: 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVA-RIMGSTHVISVNV----L 130
LL+LDDVW +P+ LK ++ +IL+TTR ++V +MG HV+ V
Sbjct: 239 LLILDDVW-------DPWV--LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 131 SEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRS-------- 182
+E S+F ++ K+E+L I+K+CKG PL I +LLR
Sbjct: 290 KGLEILSLFVNM--------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 341
Query: 183 --KNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRK 240
+ K+++ I ++ ++ EA+++ + +S L +K ++ ++ KD +
Sbjct: 342 LRQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 241 HKLIELWMAQGYLSEKGAKEMEDIGEEYFN 270
L LW + +E+EDI +E+ N
Sbjct: 398 KVLCVLWDLE-------TEEVEDILQEFVN 420
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 50/241 (20%)
Query: 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVA-RIMGSTHVISVNVL---- 130
LL+LDDVW+ W LK + +IL+TTR ++V +MG +V+ V
Sbjct: 245 LLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 295
Query: 131 SEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRS-------- 182
+E S+F ++ K+ +L + I+K+CKG PL I +LLR
Sbjct: 296 KGLEILSLFVNM--------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 347
Query: 183 --KNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRK 240
+ K+++ I ++ ++ EA+++ + +S L +K ++ ++ KD +
Sbjct: 348 LKQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPT 403
Query: 241 HKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHD 300
L LW + +E+EDI +E+ N F D N G+ ++ +HD+ D
Sbjct: 404 KVLCILW-------DMETEEVEDILQEFVN---KSLLFCDRN----GKSFRYYLHDLQVD 449
Query: 301 F 301
F
Sbjct: 450 F 450
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 43/210 (20%)
Query: 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVA-RIMGSTHVISVNV----L 130
LL+LDDVW+ W LK ++ +IL+TT ++V +MG HV+ V
Sbjct: 246 LLILDDVWD----PW-----VLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 131 SEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRS-------- 182
+E S+F ++ K+E+L I+K+CKG PL I +LLR
Sbjct: 297 KGLEILSLFVNM--------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 348
Query: 183 --KNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRK 240
+ K+++ I ++ ++ EA+++ + +S L +K ++ ++ KD +
Sbjct: 349 LRQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPT 404
Query: 241 HKLIELWMAQGYLSEKGAKEMEDIGEEYFN 270
L LW + +E+EDI +E+ N
Sbjct: 405 KVLCVLWDLE-------TEEVEDILQEFVN 427
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIE 410
V GL SL +W + + FE L+ ++RE W RNN I+ IP+
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLS-------KLRELWLRNNPIESIPSYAFN 168
Query: 411 KLLHLKYLNLKGQKKIEKLPETLCE-LYNLERLNVDDCQNLRELP 454
++ L L+L KK+E + E E L+NL+ LN+ C N++++P
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP 212
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 350 GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408
G GL L +L + + + V Q FE L+ ++RE W RNN I+ IP+
Sbjct: 77 GAFNGLPSLNTLELFDNRLT---TVPTQAFEYLS-------KLRELWLRNNPIESIPSYA 126
Query: 409 IEKLLHLKYLNLKGQKKIEKLPETLCE-LYNLERLNVDDCQNLRELPRGIGKLR 461
++ L+ L+L K++E + E E L NL LN+ C NL+++P +R
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPNLTALVR 179
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 350 GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408
G GL L +L + + + V Q FE L+ ++RE W RNN I+ IP+
Sbjct: 77 GAFNGLPSLNTLELFDNRLT---TVPTQAFEYLS-------KLRELWLRNNPIESIPSYA 126
Query: 409 IEKLLHLKYLNLKGQKKIEKLPETLCE-LYNLERLNVDDCQNLRELPRGIGKLR 461
++ L+ L+L K++E + E E L NL LN+ C NL+++P +R
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPNLTALVR 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 350 GNVTGLRGLRSLLVKSDEYSWSS-EVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408
G GL L+SL ++ W+ LP L L++L++ RN+ + +
Sbjct: 177 GEHQGLVNLQSLRLE-----WTGIRSLPASIANLQNLKSLKI-------RNSPLSALGPA 224
Query: 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHN 468
I L L+ L+L+G + P L+RL + DC NL LP I +L +L L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL-- 282
Query: 469 EDTGC--LRYLPAGIGEL 484
+ GC L LP+ I +L
Sbjct: 283 DLRGCVNLSRLPSLIAQL 300
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Query: 339 RRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPR 398
+R ASVP I N + L + ++ + ++ P +F+ L L+ L L
Sbjct: 29 KRHASVPAGIPTNA------QILYLHDNQIT---KLEPGVFDSLINLKELYLG------- 72
Query: 399 NNLIKEIPTNI-EKLLHLKYLNLKGQKKIEKLPETLCE-LYNLERLNVDDCQNLRELPRG 456
+N + +P + + L L L+L G ++ LP + + L +L+ L + C L ELPRG
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRG 130
Query: 457 IGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRV-REFVVGGGYDRAC 503
I +L L +L D L+ +P G + RL + ++ G +D C
Sbjct: 131 IERLTHLTHL-ALDQNQLKSIPHGAFD--RLSSLTHAYLFGNPWDCEC 175
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 391 QVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPETLCE-LYNLERLNVDDCQ 448
+++E W RNN I+ IP+ ++ L+ L+L K++ + E E L NL LN+ C
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC- 195
Query: 449 NLRELP 454
NLRE+P
Sbjct: 196 NLREIP 201
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 322 AISSFVEKKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEK 381
+S+ E LHL G ++P S+ G+++ LR L+ W + + ++ ++
Sbjct: 410 TLSNCSELVSLHLSFNYLSG-TIPSSL-GSLSKLRDLKL---------WLNMLEGEIPQE 458
Query: 382 LTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLER 441
L ++ LE + + N+L EIP+ + +L +++L + ++P+ + L NL
Sbjct: 459 LMYVKTLETLILD---FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 442 LNVDDCQNLRELPRGIGKLRKLMYL 466
L + + +P +G R L++L
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWL 540
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 367 EYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI 426
+++ S +P L+ LR L+L W N L EIP + + L+ L L
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKL-----W-LNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 427 EKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 483
++P L NL +++ + + E+P+ IG+L L L + +PA +G+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 322 AISSFVEKKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEK 381
+S+ E LHL G ++P S+ G+++ LR L+ W + + ++ ++
Sbjct: 413 TLSNCSELVSLHLSFNYLSG-TIPSSL-GSLSKLRDLKL---------WLNMLEGEIPQE 461
Query: 382 LTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLER 441
L ++ LE + + N+L EIP+ + +L +++L + ++P+ + L NL
Sbjct: 462 LMYVKTLETLILD---FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 442 LNVDDCQNLRELPRGIGKLRKLMYL 466
L + + +P +G R L++L
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWL 543
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 367 EYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI 426
+++ S +P L+ LR L+L W N L EIP + + L+ L L
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKL-----W-LNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 427 EKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 483
++P L NL +++ + + E+P+ IG+L L L + +PA +G+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
Restriction Endonuclease Bpusi
Length = 878
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 175 TIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPK 234
T+++ + + W N +E EL +I GLL P L+S N P+ C++ P+
Sbjct: 338 TVSAGFNNVXPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGE--DVCSLNPE 395
Query: 235 DYG 237
D+
Sbjct: 396 DFA 398
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 23 FEKRTWVCVSEP-----FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLL 77
++ +W+ EP + +F IAR I+ K+L F + M+ ++ G F
Sbjct: 768 YKSDSWLGRGEPTHIIDYLKFSIARPAID-------KELEAFHNAMKAAKDTEDGAHF-- 818
Query: 78 VLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARI 118
W+ D + F+K + + S +L TT K + +
Sbjct: 819 -----WDPDLASYYTFFKEISDKSRSSALLFTTLKNRIGEV 854
>pdb|1WY6|A Chain A, Crystal Structure Of Hypothetical Protein [st1625p] From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 172
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 150 GKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKG 206
GKR+ LE+IGREI+K + IA+ LR E++ +L +EA +KG
Sbjct: 105 GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL------IEACKKG 155
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 399 NNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIG 458
NNL+ IP I KL L YL + +P+ L ++ L L+ LP I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 459 KLRKLM 464
L L+
Sbjct: 147 SLPNLV 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,505,318
Number of Sequences: 62578
Number of extensions: 649891
Number of successful extensions: 1462
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 39
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)