Query 046115
Match_columns 505
No_of_seqs 194 out of 3494
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.9E-60 1.1E-64 496.7 33.2 476 1-496 187-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.1E-46 9E-51 412.1 34.5 446 1-495 215-714 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.3E-38 7.1E-43 300.6 8.7 252 1-255 27-284 (287)
4 PRK04841 transcriptional regul 99.5 6.1E-12 1.3E-16 139.3 23.9 268 1-307 40-333 (903)
5 KOG0617 Ras suppressor protein 99.3 4.1E-14 8.9E-19 115.9 -2.8 146 330-492 34-180 (264)
6 KOG0617 Ras suppressor protein 99.3 3.1E-14 6.7E-19 116.6 -4.5 135 332-483 59-194 (264)
7 COG2909 MalT ATP-dependent tra 99.3 2.4E-10 5.2E-15 116.3 19.0 273 1-309 45-341 (894)
8 PLN00113 leucine-rich repeat r 99.2 1.4E-11 2.9E-16 137.4 9.3 136 349-493 157-292 (968)
9 PLN00113 leucine-rich repeat r 99.2 1.3E-11 2.9E-16 137.4 8.5 152 330-493 165-316 (968)
10 KOG0472 Leucine-rich repeat pr 99.1 9.6E-12 2.1E-16 115.4 -2.0 146 330-493 389-536 (565)
11 KOG0444 Cytoskeletal regulator 99.1 3.8E-11 8.3E-16 117.4 1.0 147 331-492 105-252 (1255)
12 TIGR03015 pepcterm_ATPase puta 99.0 3.9E-08 8.5E-13 92.6 19.6 173 1-180 51-242 (269)
13 PRK00411 cdc6 cell division co 99.0 1.3E-07 2.9E-12 94.3 24.2 278 1-295 63-374 (394)
14 PF14580 LRR_9: Leucine-rich r 99.0 4.8E-10 1E-14 96.1 5.2 130 354-499 17-154 (175)
15 KOG0444 Cytoskeletal regulator 99.0 3.2E-11 6.8E-16 117.9 -3.1 147 330-493 223-370 (1255)
16 PLN03210 Resistant to P. syrin 98.9 4.6E-09 1E-13 117.9 10.6 133 330-479 590-722 (1153)
17 TIGR02928 orc1/cdc6 family rep 98.9 1.1E-06 2.4E-11 86.7 24.3 269 1-283 48-352 (365)
18 PF05729 NACHT: NACHT domain 98.8 2.6E-08 5.6E-13 86.3 10.2 135 1-143 8-163 (166)
19 KOG0472 Leucine-rich repeat pr 98.8 4E-10 8.7E-15 104.8 -3.3 119 347-481 197-316 (565)
20 KOG4194 Membrane glycoprotein 98.8 1.5E-09 3.3E-14 105.6 0.2 126 354-491 291-422 (873)
21 COG3903 Predicted ATPase [Gene 98.7 5.2E-08 1.1E-12 92.2 8.7 286 1-309 22-317 (414)
22 KOG0532 Leucine-rich repeat (L 98.7 1.8E-09 3.8E-14 104.9 -1.3 123 354-492 119-241 (722)
23 PLN03150 hypothetical protein; 98.7 5.3E-08 1.1E-12 102.0 8.7 113 357-478 419-532 (623)
24 PF01637 Arch_ATPase: Archaeal 98.6 3.3E-07 7.2E-12 84.2 10.3 169 1-175 28-233 (234)
25 PF14580 LRR_9: Leucine-rich r 98.6 8.9E-08 1.9E-12 82.2 5.3 123 330-470 20-149 (175)
26 PLN03150 hypothetical protein; 98.6 1.1E-07 2.3E-12 99.7 6.8 94 385-484 420-513 (623)
27 COG2256 MGS1 ATPase related to 98.5 2.9E-06 6.3E-11 80.0 15.2 143 1-171 56-207 (436)
28 TIGR00635 ruvB Holliday juncti 98.5 8.3E-06 1.8E-10 78.3 18.9 234 1-279 38-287 (305)
29 PRK06893 DNA replication initi 98.5 1E-06 2.2E-11 80.3 11.9 148 1-180 47-207 (229)
30 PRK00080 ruvB Holliday junctio 98.5 2E-06 4.3E-11 83.2 14.3 242 1-279 59-308 (328)
31 KOG4658 Apoptotic ATPase [Sign 98.5 9.8E-08 2.1E-12 102.3 5.1 131 354-496 521-653 (889)
32 KOG1259 Nischarin, modulator o 98.5 2.2E-08 4.7E-13 90.0 -0.1 129 330-478 285-415 (490)
33 KOG4194 Membrane glycoprotein 98.5 1.3E-07 2.8E-12 92.5 4.4 165 321-493 164-349 (873)
34 PRK15370 E3 ubiquitin-protein 98.5 4.7E-07 1E-11 95.6 8.8 102 330-456 200-301 (754)
35 KOG0532 Leucine-rich repeat (L 98.4 1E-08 2.2E-13 99.8 -3.9 131 335-484 81-211 (722)
36 PRK15370 E3 ubiquitin-protein 98.4 6.1E-07 1.3E-11 94.8 8.6 124 330-481 179-302 (754)
37 COG3899 Predicted ATPase [Gene 98.4 6.2E-06 1.4E-10 88.9 16.3 219 71-308 152-388 (849)
38 KOG1259 Nischarin, modulator o 98.4 8.1E-08 1.8E-12 86.4 0.8 124 354-493 282-407 (490)
39 KOG0618 Serine/threonine phosp 98.4 4.5E-08 9.8E-13 100.6 -1.3 110 355-477 44-153 (1081)
40 KOG0618 Serine/threonine phosp 98.3 1.3E-07 2.9E-12 97.2 1.3 110 350-472 377-487 (1081)
41 PF13855 LRR_8: Leucine rich r 98.3 4.9E-07 1.1E-11 63.5 3.8 58 413-472 1-60 (61)
42 PRK15387 E3 ubiquitin-protein 98.3 3.6E-06 7.9E-11 88.7 11.3 34 330-370 223-256 (788)
43 PRK15387 E3 ubiquitin-protein 98.3 7E-07 1.5E-11 93.9 5.3 86 383-483 382-467 (788)
44 PF13401 AAA_22: AAA domain; P 98.3 9.8E-07 2.1E-11 73.0 5.1 107 1-112 12-125 (131)
45 TIGR03420 DnaA_homol_Hda DnaA 98.3 9.9E-06 2.1E-10 74.1 12.1 148 1-180 46-205 (226)
46 TIGR00678 holB DNA polymerase 98.2 2.7E-05 5.8E-10 68.9 12.6 90 72-171 95-186 (188)
47 PF13173 AAA_14: AAA domain 98.2 5.4E-06 1.2E-10 68.2 7.6 111 1-134 10-126 (128)
48 cd00116 LRR_RI Leucine-rich re 98.2 1.7E-06 3.6E-11 83.7 4.5 157 330-494 82-259 (319)
49 cd00116 LRR_RI Leucine-rich re 98.2 1.2E-06 2.7E-11 84.6 3.5 156 330-492 109-285 (319)
50 PTZ00112 origin recognition co 98.2 0.00014 3.1E-09 75.9 18.2 178 1-180 789-986 (1164)
51 COG4886 Leucine-rich repeat (L 98.1 2.3E-06 5E-11 85.4 3.8 123 354-491 161-283 (394)
52 PRK13342 recombination factor 98.1 6.6E-05 1.4E-09 75.0 13.5 149 1-178 44-198 (413)
53 PRK14949 DNA polymerase III su 98.1 8.6E-05 1.9E-09 78.4 14.5 101 71-175 117-220 (944)
54 KOG3207 Beta-tubulin folding c 98.0 1.4E-06 3E-11 82.6 1.3 155 330-495 122-281 (505)
55 PRK08084 DNA replication initi 98.0 8.7E-05 1.9E-09 67.9 13.0 148 1-180 53-213 (235)
56 PF13855 LRR_8: Leucine rich r 98.0 6.3E-06 1.4E-10 57.8 4.2 57 384-448 2-60 (61)
57 PRK07003 DNA polymerase III su 98.0 5.4E-05 1.2E-09 78.3 12.5 103 72-178 118-223 (830)
58 PRK14961 DNA polymerase III su 98.0 0.00015 3.4E-09 71.0 15.4 96 72-171 118-215 (363)
59 PRK08727 hypothetical protein; 98.0 0.00011 2.4E-09 67.1 13.5 141 1-173 49-201 (233)
60 PF12799 LRR_4: Leucine Rich r 98.0 6.2E-06 1.4E-10 53.0 3.7 34 414-448 2-35 (44)
61 KOG4237 Extracellular matrix p 98.0 7.7E-07 1.7E-11 83.2 -0.9 136 340-493 57-196 (498)
62 PRK14960 DNA polymerase III su 98.0 0.00013 2.9E-09 74.6 14.4 96 72-171 117-214 (702)
63 cd01128 rho_factor Transcripti 98.0 1.4E-05 3.1E-10 73.1 6.4 83 1-84 24-114 (249)
64 PRK14963 DNA polymerase III su 98.0 4.7E-05 1E-09 77.2 10.5 98 72-173 115-214 (504)
65 COG4886 Leucine-rich repeat (L 98.0 4.5E-06 9.8E-11 83.3 3.2 145 330-492 117-262 (394)
66 PRK14957 DNA polymerase III su 97.9 0.00024 5.2E-09 72.3 15.0 104 71-178 117-223 (546)
67 PRK05642 DNA replication initi 97.9 0.00015 3.2E-09 66.4 12.3 147 2-180 54-212 (234)
68 PRK05564 DNA polymerase III su 97.9 0.00025 5.4E-09 68.1 14.3 147 1-173 34-187 (313)
69 PRK12323 DNA polymerase III su 97.9 0.00014 3E-09 74.3 12.9 104 71-178 122-228 (700)
70 PRK14964 DNA polymerase III su 97.9 0.00039 8.6E-09 69.8 15.1 96 72-171 115-212 (491)
71 PRK06645 DNA polymerase III su 97.9 7.3E-05 1.6E-09 75.5 9.8 97 71-171 126-224 (507)
72 KOG3207 Beta-tubulin folding c 97.8 8.3E-06 1.8E-10 77.5 2.4 114 354-478 195-317 (505)
73 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 50.6 3.5 40 437-478 1-40 (44)
74 PF14516 AAA_35: AAA-like doma 97.8 0.0017 3.6E-08 62.8 18.3 171 2-183 40-246 (331)
75 PRK08691 DNA polymerase III su 97.8 0.00035 7.6E-09 72.2 13.3 103 72-178 118-223 (709)
76 PRK09087 hypothetical protein; 97.8 0.00042 9.2E-09 62.8 12.5 100 76-180 90-199 (226)
77 PRK07994 DNA polymerase III su 97.8 0.00041 8.9E-09 71.9 13.8 102 71-176 117-221 (647)
78 PRK08903 DnaA regulatory inact 97.8 0.00031 6.7E-09 64.2 11.8 144 1-180 50-203 (227)
79 COG1474 CDC6 Cdc6-related prot 97.8 0.0057 1.2E-07 59.6 20.9 263 1-284 50-337 (366)
80 PRK14962 DNA polymerase III su 97.8 0.0011 2.4E-08 66.8 16.5 118 72-193 116-239 (472)
81 PRK07940 DNA polymerase III su 97.8 0.00054 1.2E-08 67.3 13.6 92 72-172 116-209 (394)
82 PRK14958 DNA polymerase III su 97.7 0.0005 1.1E-08 70.0 13.6 101 72-176 118-221 (509)
83 cd00009 AAA The AAA+ (ATPases 97.7 0.00014 3E-09 61.1 8.4 99 1-114 27-131 (151)
84 PRK12402 replication factor C 97.7 0.00088 1.9E-08 65.3 15.0 99 73-175 125-225 (337)
85 PRK09376 rho transcription ter 97.7 5.4E-05 1.2E-09 72.6 6.1 83 1-84 177-267 (416)
86 PRK14956 DNA polymerase III su 97.7 0.00013 2.8E-09 72.4 8.8 97 71-171 119-217 (484)
87 PF00308 Bac_DnaA: Bacterial d 97.7 0.00033 7.2E-09 63.2 10.7 156 2-180 43-212 (219)
88 PRK14951 DNA polymerase III su 97.7 0.0008 1.7E-08 69.6 14.4 98 72-173 123-222 (618)
89 PRK14087 dnaA chromosomal repl 97.7 0.00064 1.4E-08 68.3 13.0 160 2-180 150-323 (450)
90 PRK15386 type III secretion pr 97.7 5.9E-05 1.3E-09 73.0 5.3 115 330-471 53-187 (426)
91 PRK07471 DNA polymerase III su 97.6 0.0012 2.7E-08 64.2 14.2 97 72-176 140-238 (365)
92 PLN03025 replication factor C 97.6 0.0007 1.5E-08 65.2 12.6 96 72-171 98-195 (319)
93 PRK09112 DNA polymerase III su 97.6 0.0016 3.4E-08 63.2 14.7 97 72-174 140-238 (351)
94 TIGR02397 dnaX_nterm DNA polym 97.6 0.0022 4.8E-08 63.0 15.8 102 72-177 116-219 (355)
95 PRK05707 DNA polymerase III su 97.6 0.0014 3.1E-08 62.8 13.8 92 74-173 107-200 (328)
96 PRK15386 type III secretion pr 97.6 7.1E-05 1.5E-09 72.5 4.7 85 354-459 50-136 (426)
97 KOG4579 Leucine-rich repeat (L 97.6 1.3E-05 2.9E-10 64.0 -0.2 88 355-454 52-139 (177)
98 PRK14969 DNA polymerase III su 97.6 0.0009 1.9E-08 68.6 12.9 104 71-178 117-223 (527)
99 KOG2028 ATPase related to the 97.5 0.0014 3.1E-08 61.3 12.2 147 1-170 170-330 (554)
100 PRK14955 DNA polymerase III su 97.5 0.0014 3E-08 65.2 13.3 98 72-173 126-225 (397)
101 PF05496 RuvB_N: Holliday junc 97.5 0.00068 1.5E-08 60.0 9.7 138 1-171 58-216 (233)
102 PRK14959 DNA polymerase III su 97.5 0.0024 5.2E-08 65.8 15.0 106 71-180 117-225 (624)
103 PRK09111 DNA polymerase III su 97.5 0.0025 5.5E-08 66.0 15.2 100 72-175 131-232 (598)
104 PRK05896 DNA polymerase III su 97.5 0.0023 4.9E-08 65.6 14.5 102 73-178 119-223 (605)
105 PRK07764 DNA polymerase III su 97.5 0.0022 4.7E-08 68.9 15.0 104 71-178 118-224 (824)
106 PRK06620 hypothetical protein; 97.5 0.0026 5.6E-08 57.2 13.3 96 75-176 87-189 (214)
107 PRK13341 recombination factor 97.5 0.0014 3E-08 69.4 12.6 97 72-171 108-212 (725)
108 PRK14952 DNA polymerase III su 97.4 0.0055 1.2E-07 63.2 16.4 105 72-180 117-224 (584)
109 TIGR00767 rho transcription te 97.4 0.00032 7E-09 67.7 6.8 82 1-84 176-266 (415)
110 PRK00440 rfc replication facto 97.4 0.0053 1.2E-07 59.3 15.4 96 73-172 102-199 (319)
111 PRK14950 DNA polymerase III su 97.4 0.0042 9.1E-08 64.9 15.2 102 72-177 119-222 (585)
112 PRK04195 replication factor C 97.4 0.0046 1E-07 63.1 15.3 153 1-180 47-206 (482)
113 KOG4237 Extracellular matrix p 97.4 2.1E-05 4.5E-10 73.9 -1.7 103 384-493 68-172 (498)
114 PF05621 TniB: Bacterial TniB 97.4 0.0042 9.2E-08 57.7 13.0 167 2-170 70-255 (302)
115 PRK14953 DNA polymerase III su 97.4 0.0085 1.8E-07 60.8 16.4 102 71-176 117-220 (486)
116 TIGR00362 DnaA chromosomal rep 97.3 0.0038 8.2E-08 62.4 13.3 154 1-177 144-311 (405)
117 PRK14954 DNA polymerase III su 97.3 0.0074 1.6E-07 62.8 15.6 100 72-175 126-228 (620)
118 COG3267 ExeA Type II secretory 97.3 0.013 2.8E-07 52.7 14.7 174 2-179 60-248 (269)
119 PRK12422 chromosomal replicati 97.3 0.0089 1.9E-07 60.0 15.0 147 1-170 149-307 (445)
120 PRK14970 DNA polymerase III su 97.2 0.0089 1.9E-07 58.9 14.9 96 72-171 107-204 (367)
121 PRK07133 DNA polymerase III su 97.2 0.0085 1.8E-07 62.8 15.1 102 72-177 117-221 (725)
122 CHL00181 cbbX CbbX; Provisiona 97.2 0.011 2.4E-07 55.7 14.5 126 1-145 67-211 (287)
123 PRK08116 hypothetical protein; 97.2 0.0013 2.7E-08 61.4 8.0 95 2-112 123-220 (268)
124 KOG0531 Protein phosphatase 1, 97.2 0.00013 2.9E-09 73.1 1.5 104 354-472 93-197 (414)
125 TIGR01242 26Sp45 26S proteasom 97.2 0.0026 5.5E-08 62.6 10.5 143 1-170 164-328 (364)
126 smart00382 AAA ATPases associa 97.2 0.0018 3.9E-08 53.8 8.2 107 1-112 10-125 (148)
127 PRK06305 DNA polymerase III su 97.2 0.0098 2.1E-07 59.9 14.6 102 72-177 120-224 (451)
128 KOG0531 Protein phosphatase 1, 97.2 9.3E-05 2E-09 74.2 -0.0 106 354-474 70-175 (414)
129 PRK14088 dnaA chromosomal repl 97.2 0.0084 1.8E-07 60.3 13.9 173 1-195 138-331 (440)
130 PRK14948 DNA polymerase III su 97.2 0.016 3.4E-07 60.7 16.2 100 72-175 120-221 (620)
131 PRK14086 dnaA chromosomal repl 97.2 0.0085 1.8E-07 61.6 13.8 154 2-178 323-490 (617)
132 PF00004 AAA: ATPase family as 97.2 0.0013 2.9E-08 54.1 6.9 92 1-113 6-112 (132)
133 PRK00149 dnaA chromosomal repl 97.1 0.0076 1.7E-07 61.1 13.6 153 1-176 156-322 (450)
134 TIGR02880 cbbX_cfxQ probable R 97.1 0.0097 2.1E-07 56.1 13.2 70 75-144 123-209 (284)
135 PRK08769 DNA polymerase III su 97.1 0.007 1.5E-07 57.6 12.2 92 72-173 112-205 (319)
136 PRK08451 DNA polymerase III su 97.1 0.0034 7.4E-08 63.8 10.6 99 72-174 116-216 (535)
137 TIGR02903 spore_lon_C ATP-depe 97.1 0.006 1.3E-07 63.9 12.3 113 62-178 281-397 (615)
138 KOG1859 Leucine-rich repeat pr 97.1 3.8E-05 8.2E-10 77.7 -3.8 124 330-472 165-290 (1096)
139 KOG4579 Leucine-rich repeat (L 97.1 0.00012 2.7E-09 58.6 -0.3 85 379-472 49-134 (177)
140 COG0593 DnaA ATPase involved i 97.0 0.0081 1.8E-07 58.6 11.4 130 2-149 122-263 (408)
141 COG1373 Predicted ATPase (AAA+ 97.0 0.0091 2E-07 59.1 12.1 141 2-176 46-192 (398)
142 PRK14971 DNA polymerase III su 97.0 0.027 5.8E-07 59.0 15.9 97 72-172 120-218 (614)
143 PHA02544 44 clamp loader, smal 97.0 0.0077 1.7E-07 58.1 11.3 117 1-141 51-171 (316)
144 PRK14965 DNA polymerase III su 96.9 0.033 7.2E-07 58.0 16.1 103 72-178 118-223 (576)
145 KOG3665 ZYG-1-like serine/thre 96.9 0.0012 2.6E-08 69.7 5.4 114 354-477 146-266 (699)
146 PRK07399 DNA polymerase III su 96.9 0.026 5.7E-07 53.9 13.8 97 72-175 123-220 (314)
147 KOG0741 AAA+-type ATPase [Post 96.9 0.019 4E-07 56.8 12.7 139 1-166 546-704 (744)
148 PRK04132 replication factor C 96.9 0.034 7.4E-07 59.7 15.8 149 1-171 574-726 (846)
149 TIGR02881 spore_V_K stage V sp 96.9 0.017 3.8E-07 53.8 12.2 70 75-144 107-192 (261)
150 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.9E-08 56.5 4.1 62 409-472 60-124 (233)
151 PRK06647 DNA polymerase III su 96.8 0.051 1.1E-06 56.2 16.2 98 71-172 117-216 (563)
152 PRK06871 DNA polymerase III su 96.8 0.032 6.9E-07 53.3 13.5 91 72-171 106-198 (325)
153 KOG2739 Leucine-rich acidic nu 96.8 0.00063 1.4E-08 60.9 1.8 85 411-497 63-155 (260)
154 PRK08181 transposase; Validate 96.7 0.0039 8.4E-08 57.9 6.7 94 1-113 114-209 (269)
155 PF04665 Pox_A32: Poxvirus A32 96.7 0.0039 8.4E-08 56.4 6.3 29 1-31 21-49 (241)
156 PRK03992 proteasome-activating 96.7 0.013 2.8E-07 58.1 10.6 143 1-170 173-337 (389)
157 KOG2120 SCF ubiquitin ligase, 96.7 0.00032 6.9E-09 63.8 -0.7 134 349-493 227-371 (419)
158 KOG2123 Uncharacterized conser 96.7 0.00012 2.6E-09 65.8 -3.5 61 411-474 39-101 (388)
159 KOG3665 ZYG-1-like serine/thre 96.7 0.00097 2.1E-08 70.3 2.5 108 356-472 122-231 (699)
160 PRK07952 DNA replication prote 96.6 0.0028 6.1E-08 57.9 5.1 94 2-112 108-204 (244)
161 PRK08058 DNA polymerase III su 96.6 0.019 4E-07 55.5 11.0 70 72-141 109-180 (329)
162 PF01695 IstB_IS21: IstB-like 96.6 0.0021 4.5E-08 55.9 4.0 93 1-112 55-149 (178)
163 PRK05563 DNA polymerase III su 96.6 0.08 1.7E-06 55.0 16.2 98 71-172 117-216 (559)
164 KOG1859 Leucine-rich repeat pr 96.6 0.00019 4.2E-09 72.8 -2.8 121 357-493 165-287 (1096)
165 PRK06090 DNA polymerase III su 96.6 0.048 1E-06 51.9 13.3 91 72-174 107-199 (319)
166 PRK07993 DNA polymerase III su 96.6 0.042 9.2E-07 52.9 13.1 91 72-171 107-199 (334)
167 TIGR03345 VI_ClpV1 type VI sec 96.6 0.021 4.6E-07 62.2 12.1 98 72-170 279-390 (852)
168 PRK12377 putative replication 96.6 0.003 6.6E-08 57.8 4.8 93 2-112 110-205 (248)
169 KOG0989 Replication factor C, 96.6 0.0092 2E-07 54.9 7.6 92 75-170 131-224 (346)
170 KOG2543 Origin recognition com 96.5 0.086 1.9E-06 50.2 13.9 136 2-142 39-192 (438)
171 PRK08939 primosomal protein Dn 96.4 0.0072 1.6E-07 57.4 6.5 92 2-112 165-260 (306)
172 PRK06835 DNA replication prote 96.4 0.0052 1.1E-07 58.9 5.5 94 2-112 192-288 (329)
173 PRK06921 hypothetical protein; 96.4 0.015 3.3E-07 54.1 8.5 90 2-112 126-224 (266)
174 KOG1644 U2-associated snRNP A' 96.4 0.0062 1.3E-07 52.5 5.2 80 381-470 62-149 (233)
175 PTZ00361 26 proteosome regulat 96.4 0.021 4.5E-07 56.9 9.7 122 1-143 225-367 (438)
176 PF13177 DNA_pol3_delta2: DNA 96.4 0.024 5.1E-07 48.6 8.8 59 72-130 101-161 (162)
177 PRK11331 5-methylcytosine-spec 96.4 0.009 2E-07 58.9 6.9 83 1-87 202-286 (459)
178 TIGR02640 gas_vesic_GvpN gas v 96.3 0.089 1.9E-06 49.1 12.9 35 1-40 29-63 (262)
179 PRK06964 DNA polymerase III su 96.3 0.078 1.7E-06 51.1 12.6 89 72-172 131-221 (342)
180 PRK08699 DNA polymerase III su 96.3 0.045 9.8E-07 52.5 11.0 69 73-141 113-183 (325)
181 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.021 4.5E-07 48.3 7.5 110 2-113 11-138 (159)
182 PF13191 AAA_16: AAA ATPase do 96.2 0.0064 1.4E-07 53.3 4.7 20 1-22 32-51 (185)
183 PRK09361 radB DNA repair and r 96.2 0.012 2.6E-07 53.6 6.6 36 1-39 31-66 (225)
184 PRK09183 transposase/IS protei 96.2 0.008 1.7E-07 55.8 5.4 93 1-112 110-205 (259)
185 TIGR03689 pup_AAA proteasome A 96.2 0.023 4.9E-07 57.6 8.9 130 1-143 224-378 (512)
186 TIGR02639 ClpA ATP-dependent C 96.2 0.041 8.9E-07 59.3 11.4 125 1-143 211-358 (731)
187 PRK12608 transcription termina 96.2 0.021 4.6E-07 55.0 8.2 81 2-84 142-231 (380)
188 PTZ00454 26S protease regulato 96.2 0.075 1.6E-06 52.5 12.3 144 1-170 187-351 (398)
189 KOG2227 Pre-initiation complex 96.2 0.39 8.6E-06 47.2 16.6 163 2-170 184-362 (529)
190 KOG2739 Leucine-rich acidic nu 96.0 0.0045 9.7E-08 55.6 2.5 86 410-499 40-130 (260)
191 CHL00176 ftsH cell division pr 95.9 0.13 2.7E-06 54.2 13.2 142 1-168 224-386 (638)
192 PRK06526 transposase; Provisio 95.9 0.015 3.3E-07 53.6 5.9 94 1-113 106-201 (254)
193 cd01120 RecA-like_NTPases RecA 95.9 0.034 7.4E-07 47.4 7.8 34 1-36 7-40 (165)
194 KOG1909 Ran GTPase-activating 95.9 0.0049 1.1E-07 57.6 2.5 111 354-472 90-224 (382)
195 CHL00095 clpC Clp protease ATP 95.9 0.067 1.5E-06 58.5 11.3 124 1-142 208-353 (821)
196 TIGR02237 recomb_radB DNA repa 95.8 0.023 5E-07 51.1 6.4 37 1-40 20-56 (209)
197 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.033 7.1E-07 51.1 7.4 46 1-47 27-76 (235)
198 TIGR01241 FtsH_fam ATP-depende 95.7 0.16 3.4E-06 52.2 12.8 150 1-176 96-267 (495)
199 KOG2123 Uncharacterized conser 95.6 0.0014 2.9E-08 59.2 -2.2 99 356-468 19-124 (388)
200 COG2812 DnaX DNA polymerase II 95.6 0.071 1.5E-06 53.8 9.6 97 71-171 117-215 (515)
201 COG0470 HolB ATPase involved i 95.6 0.047 1E-06 52.7 8.1 115 1-134 32-172 (325)
202 PTZ00202 tuzin; Provisional 95.5 0.44 9.5E-06 47.0 13.9 133 1-142 294-433 (550)
203 COG1222 RPT1 ATP-dependent 26S 95.5 0.16 3.4E-06 48.1 10.5 153 1-180 193-371 (406)
204 TIGR03346 chaperone_ClpB ATP-d 95.5 0.13 2.8E-06 56.5 11.7 71 72-142 265-348 (852)
205 PF08423 Rad51: Rad51; InterP 95.4 0.047 1E-06 50.6 7.1 48 1-49 46-97 (256)
206 PRK04296 thymidine kinase; Pro 95.4 0.025 5.4E-07 49.9 5.1 105 2-113 11-116 (190)
207 PF00560 LRR_1: Leucine Rich R 95.4 0.0071 1.5E-07 32.2 1.0 9 439-447 2-10 (22)
208 cd01394 radB RadB. The archaea 95.4 0.039 8.4E-07 49.9 6.4 34 1-36 27-60 (218)
209 KOG0735 AAA+-type ATPase [Post 95.4 0.13 2.8E-06 53.0 10.3 153 2-177 440-617 (952)
210 TIGR00602 rad24 checkpoint pro 95.3 0.11 2.4E-06 54.3 9.9 48 123-170 267-317 (637)
211 CHL00195 ycf46 Ycf46; Provisio 95.3 0.1 2.2E-06 52.9 9.5 146 1-170 267-429 (489)
212 cd01393 recA_like RecA is a b 95.3 0.067 1.5E-06 48.7 7.6 80 1-83 27-124 (226)
213 PRK07276 DNA polymerase III su 95.2 0.23 4.9E-06 46.6 10.9 68 72-140 103-172 (290)
214 PRK07132 DNA polymerase III su 95.2 0.42 9E-06 45.3 12.8 94 72-175 89-184 (299)
215 PF00560 LRR_1: Leucine Rich R 95.2 0.01 2.2E-07 31.6 1.2 21 414-435 1-21 (22)
216 KOG0733 Nuclear AAA ATPase (VC 95.2 0.27 5.8E-06 49.9 11.5 147 1-170 553-718 (802)
217 PRK11034 clpA ATP-dependent Cl 95.1 0.15 3.2E-06 54.7 10.6 71 72-143 277-362 (758)
218 COG1484 DnaC DNA replication p 95.1 0.027 5.9E-07 52.0 4.5 71 2-90 114-184 (254)
219 TIGR00708 cobA cob(I)alamin ad 95.1 0.074 1.6E-06 45.5 6.6 111 2-113 14-140 (173)
220 TIGR01243 CDC48 AAA family ATP 95.1 0.22 4.7E-06 53.9 11.9 144 1-170 495-657 (733)
221 PRK08118 topology modulation p 95.1 0.0093 2E-07 51.4 1.1 28 1-28 9-37 (167)
222 COG0468 RecA RecA/RadA recombi 94.9 0.11 2.4E-06 48.2 7.8 82 1-84 68-152 (279)
223 cd01133 F1-ATPase_beta F1 ATP 94.9 0.1 2.2E-06 48.3 7.5 43 2-46 78-122 (274)
224 PF07693 KAP_NTPase: KAP famil 94.9 0.84 1.8E-05 44.0 14.4 53 65-117 162-218 (325)
225 PRK10536 hypothetical protein; 94.6 0.1 2.2E-06 47.7 6.6 37 74-113 177-213 (262)
226 TIGR03346 chaperone_ClpB ATP-d 94.6 0.098 2.1E-06 57.4 7.8 103 1-112 603-717 (852)
227 TIGR03345 VI_ClpV1 type VI sec 94.6 0.045 9.9E-07 59.7 5.1 103 1-112 604-718 (852)
228 PRK07261 topology modulation p 94.6 0.077 1.7E-06 45.9 5.6 15 1-15 8-22 (171)
229 PRK05541 adenylylsulfate kinas 94.5 0.065 1.4E-06 46.6 5.1 28 1-30 15-42 (176)
230 CHL00095 clpC Clp protease ATP 94.5 0.081 1.8E-06 57.8 6.8 102 1-112 547-661 (821)
231 PRK05986 cob(I)alamin adenolsy 94.5 0.13 2.8E-06 44.7 6.7 111 2-113 31-158 (191)
232 cd00544 CobU Adenosylcobinamid 94.5 0.15 3.2E-06 43.9 7.1 32 2-38 8-39 (169)
233 PRK10865 protein disaggregatio 94.5 0.11 2.3E-06 57.0 7.6 90 1-99 606-696 (857)
234 PRK10865 protein disaggregatio 94.4 0.48 1E-05 52.0 12.5 72 72-143 270-354 (857)
235 COG0542 clpA ATP-binding subun 94.4 0.047 1E-06 57.5 4.5 91 1-100 529-620 (786)
236 PF05673 DUF815: Protein of un 94.4 1.9 4E-05 39.2 13.9 90 2-117 61-155 (249)
237 TIGR02012 tigrfam_recA protein 94.4 0.084 1.8E-06 50.2 5.8 76 1-83 63-143 (321)
238 cd00983 recA RecA is a bacter 94.4 0.08 1.7E-06 50.4 5.6 76 1-83 63-143 (325)
239 KOG1909 Ran GTPase-activating 94.4 0.032 6.9E-07 52.3 2.8 133 354-493 56-221 (382)
240 KOG2982 Uncharacterized conser 94.3 0.026 5.7E-07 51.7 2.1 161 330-497 98-291 (418)
241 cd03247 ABCC_cytochrome_bd The 94.2 0.19 4.2E-06 43.7 7.5 55 63-117 106-161 (178)
242 cd03214 ABC_Iron-Siderophores_ 94.1 0.39 8.5E-06 41.9 9.2 114 1-117 33-162 (180)
243 PRK09354 recA recombinase A; P 94.1 0.11 2.3E-06 50.0 5.9 76 1-83 68-148 (349)
244 COG4608 AppF ABC-type oligopep 94.1 0.4 8.7E-06 43.9 9.2 136 2-140 48-199 (268)
245 PRK06067 flagellar accessory p 94.1 0.18 3.9E-06 46.2 7.2 107 1-112 33-164 (234)
246 cd01125 repA Hexameric Replica 94.0 0.4 8.7E-06 44.0 9.5 135 1-137 9-198 (239)
247 KOG0991 Replication factor C, 94.0 1.4 3E-05 39.4 11.8 15 1-15 56-70 (333)
248 PLN00020 ribulose bisphosphate 94.0 0.9 2E-05 43.8 11.6 64 101-172 266-334 (413)
249 cd01122 GP4d_helicase GP4d_hel 93.9 0.54 1.2E-05 44.1 10.4 43 1-47 38-81 (271)
250 KOG2120 SCF ubiquitin ligase, 93.9 0.011 2.4E-07 54.1 -1.1 114 352-472 256-374 (419)
251 COG2255 RuvB Holliday junction 93.9 0.71 1.5E-05 42.5 10.3 161 1-182 60-226 (332)
252 PF02562 PhoH: PhoH-like prote 93.8 0.088 1.9E-06 46.6 4.4 108 1-113 27-156 (205)
253 COG1066 Sms Predicted ATP-depe 93.8 0.17 3.8E-06 48.8 6.6 74 2-84 102-179 (456)
254 TIGR02639 ClpA ATP-dependent C 93.8 0.18 3.9E-06 54.4 7.6 87 1-99 492-579 (731)
255 KOG2982 Uncharacterized conser 93.7 0.036 7.8E-07 50.8 1.8 88 354-448 69-157 (418)
256 PRK05973 replicative DNA helic 93.7 0.39 8.5E-06 43.6 8.4 32 1-34 72-103 (237)
257 KOG0733 Nuclear AAA ATPase (VC 93.6 0.48 1E-05 48.1 9.5 154 1-180 231-410 (802)
258 KOG0730 AAA+-type ATPase [Post 93.6 1.1 2.4E-05 46.0 12.2 144 1-170 476-637 (693)
259 PF07724 AAA_2: AAA domain (Cd 93.6 0.031 6.8E-07 48.2 1.2 34 1-36 11-45 (171)
260 PRK04301 radA DNA repair and r 93.5 0.21 4.5E-06 48.1 6.9 48 1-49 110-161 (317)
261 PF07728 AAA_5: AAA domain (dy 93.4 0.032 6.8E-07 46.4 1.0 35 1-41 7-42 (139)
262 TIGR02236 recomb_radA DNA repa 93.4 0.24 5.2E-06 47.5 7.1 48 1-49 103-154 (310)
263 PF13504 LRR_7: Leucine rich r 93.4 0.052 1.1E-06 26.7 1.3 11 438-448 2-12 (17)
264 TIGR02238 recomb_DMC1 meiotic 93.3 0.26 5.6E-06 47.1 7.1 48 1-49 104-155 (313)
265 KOG0744 AAA+-type ATPase [Post 93.3 0.81 1.8E-05 42.8 9.7 71 1-82 185-259 (423)
266 KOG1514 Origin recognition com 93.3 1.4 3E-05 45.7 12.2 77 2-83 431-518 (767)
267 TIGR00763 lon ATP-dependent pr 93.1 0.42 9.1E-06 52.0 9.1 130 1-143 355-505 (775)
268 cd03228 ABCC_MRP_Like The MRP 93.1 0.6 1.3E-05 40.3 8.5 53 66-118 107-160 (171)
269 PLN03187 meiotic recombination 93.1 0.21 4.5E-06 48.2 6.0 48 1-49 134-185 (344)
270 KOG0473 Leucine-rich repeat pr 93.0 0.005 1.1E-07 54.2 -4.6 88 379-475 38-125 (326)
271 KOG0731 AAA+-type ATPase conta 92.9 1.3 2.9E-05 46.8 11.9 145 1-170 352-518 (774)
272 PRK05800 cobU adenosylcobinami 92.9 0.15 3.2E-06 44.0 4.3 40 2-47 10-49 (170)
273 COG4088 Predicted nucleotide k 92.9 0.63 1.4E-05 40.6 7.9 21 1-23 9-29 (261)
274 TIGR01243 CDC48 AAA family ATP 92.7 0.65 1.4E-05 50.3 9.9 144 1-170 220-381 (733)
275 cd03216 ABC_Carb_Monos_I This 92.7 0.39 8.4E-06 41.1 6.6 109 1-117 34-146 (163)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.93 2E-05 37.8 8.8 96 2-117 35-131 (144)
277 PF13207 AAA_17: AAA domain; P 92.6 0.068 1.5E-06 43.1 1.8 15 1-15 7-21 (121)
278 cd01121 Sms Sms (bacterial rad 92.6 0.2 4.3E-06 49.1 5.3 74 2-83 91-168 (372)
279 PRK04328 hypothetical protein; 92.6 0.39 8.5E-06 44.4 7.0 33 1-35 31-63 (249)
280 cd03223 ABCD_peroxisomal_ALDP 92.5 1.4 3E-05 37.8 9.9 110 1-117 35-152 (166)
281 PRK10787 DNA-binding ATP-depen 92.5 0.43 9.3E-06 51.7 8.1 130 1-143 357-506 (784)
282 PLN03186 DNA repair protein RA 92.5 0.42 9E-06 46.2 7.2 48 1-49 131-182 (342)
283 COG0466 Lon ATP-dependent Lon 92.4 0.62 1.4E-05 48.4 8.5 129 1-143 358-508 (782)
284 KOG2004 Mitochondrial ATP-depe 92.2 0.97 2.1E-05 46.9 9.6 131 1-144 446-597 (906)
285 cd03115 SRP The signal recogni 92.2 0.92 2E-05 39.2 8.5 82 1-84 8-93 (173)
286 PRK08233 hypothetical protein; 92.1 0.4 8.7E-06 41.7 6.3 15 1-15 11-25 (182)
287 KOG0473 Leucine-rich repeat pr 92.1 0.0056 1.2E-07 53.9 -5.4 87 351-449 37-123 (326)
288 PF13481 AAA_25: AAA domain; P 92.0 0.063 1.4E-06 47.4 0.9 34 1-34 40-81 (193)
289 PRK08533 flagellar accessory p 91.9 1 2.2E-05 41.0 8.7 40 1-44 32-71 (230)
290 cd03246 ABCC_Protease_Secretio 91.8 0.87 1.9E-05 39.4 7.9 55 63-117 104-160 (173)
291 cd03238 ABC_UvrA The excision 91.8 1.4 3E-05 38.2 8.9 107 1-117 29-153 (176)
292 KOG2035 Replication factor C, 91.7 2.4 5.3E-05 38.9 10.5 120 76-199 130-261 (351)
293 KOG1969 DNA replication checkp 91.7 0.38 8.2E-06 49.9 6.1 64 1-85 334-399 (877)
294 PF01583 APS_kinase: Adenylyls 91.6 0.15 3.2E-06 43.0 2.7 28 1-30 10-37 (156)
295 cd03222 ABC_RNaseL_inhibitor T 91.6 1.4 3.1E-05 38.2 8.9 102 1-118 33-137 (177)
296 KOG0729 26S proteasome regulat 91.6 0.2 4.3E-06 45.3 3.5 93 1-115 219-328 (435)
297 COG0464 SpoVK ATPases of the A 91.6 2.1 4.4E-05 44.2 11.6 123 1-144 284-424 (494)
298 TIGR02239 recomb_RAD51 DNA rep 91.4 0.46 1E-05 45.5 6.1 48 1-49 104-155 (316)
299 PF00158 Sigma54_activat: Sigm 91.2 0.41 8.8E-06 41.2 5.1 101 2-112 31-143 (168)
300 PRK11034 clpA ATP-dependent Cl 91.2 0.39 8.4E-06 51.6 6.0 86 1-98 496-582 (758)
301 PF10443 RNA12: RNA12 protein; 91.1 17 0.00037 36.0 17.6 115 74-188 149-290 (431)
302 TIGR03881 KaiC_arch_4 KaiC dom 91.0 1.2 2.6E-05 40.5 8.4 33 1-35 28-60 (229)
303 PF08433 KTI12: Chromatin asso 90.9 0.28 6.1E-06 45.7 4.1 15 1-15 9-23 (270)
304 COG1223 Predicted ATPase (AAA+ 90.9 2.3 4.9E-05 38.7 9.4 143 1-170 159-319 (368)
305 TIGR03877 thermo_KaiC_1 KaiC d 90.8 0.62 1.3E-05 42.7 6.3 32 1-34 29-60 (237)
306 PRK10733 hflB ATP-dependent me 90.7 2.8 6.1E-05 44.6 11.8 122 1-143 193-335 (644)
307 PF13238 AAA_18: AAA domain; P 90.6 0.15 3.2E-06 41.4 1.8 15 1-15 6-20 (129)
308 COG0563 Adk Adenylate kinase a 90.5 0.38 8.2E-06 41.8 4.3 16 1-16 8-23 (178)
309 PF00154 RecA: recA bacterial 90.5 0.32 6.9E-06 46.3 4.1 74 2-82 62-140 (322)
310 COG0396 sufC Cysteine desulfur 90.5 3 6.6E-05 37.3 9.7 61 62-122 151-213 (251)
311 PF13306 LRR_5: Leucine rich r 90.5 1.2 2.5E-05 36.1 7.1 117 352-487 8-128 (129)
312 KOG0736 Peroxisome assembly fa 90.4 1.8 3.9E-05 45.4 9.4 63 1-84 713-775 (953)
313 COG1121 ZnuC ABC-type Mn/Zn tr 90.3 2.2 4.8E-05 39.0 9.1 60 57-118 141-204 (254)
314 PRK14974 cell division protein 90.3 1.4 3.1E-05 42.4 8.3 82 1-85 148-234 (336)
315 PF07726 AAA_3: ATPase family 90.1 0.099 2.1E-06 42.1 0.3 21 2-24 8-28 (131)
316 cd03230 ABC_DR_subfamily_A Thi 90.1 0.8 1.7E-05 39.6 6.0 54 64-117 104-159 (173)
317 PRK13539 cytochrome c biogenes 90.0 2.4 5.2E-05 37.9 9.2 65 66-133 138-204 (207)
318 cd03229 ABC_Class3 This class 89.9 0.92 2E-05 39.4 6.3 55 63-117 108-165 (178)
319 PRK13849 putative crown gall t 89.9 1.1 2.4E-05 40.7 7.0 36 2-39 11-46 (231)
320 COG2884 FtsE Predicted ATPase 89.8 3.5 7.7E-05 35.7 9.2 66 55-120 137-204 (223)
321 cd01131 PilT Pilus retraction 89.7 0.35 7.6E-06 42.9 3.5 101 1-114 9-110 (198)
322 PRK00771 signal recognition pa 89.7 1.8 3.9E-05 43.4 8.8 48 1-50 103-151 (437)
323 PRK11889 flhF flagellar biosyn 89.6 1.9 4.2E-05 42.2 8.6 105 1-108 249-357 (436)
324 TIGR02974 phageshock_pspF psp 89.6 1.8 4E-05 41.7 8.6 101 2-112 31-143 (329)
325 cd01135 V_A-ATPase_B V/A-type 89.4 1.8 3.9E-05 40.2 7.9 45 2-46 78-125 (276)
326 PRK05917 DNA polymerase III su 89.4 4.9 0.00011 37.8 10.9 59 72-130 94-154 (290)
327 TIGR01650 PD_CobS cobaltochela 89.4 5.3 0.00011 38.2 11.2 32 1-37 72-103 (327)
328 TIGR01040 V-ATPase_V1_B V-type 89.3 0.76 1.6E-05 45.8 5.7 83 2-84 150-258 (466)
329 COG5635 Predicted NTPase (NACH 89.3 0.37 7.9E-06 52.9 4.0 128 67-195 299-446 (824)
330 KOG0730 AAA+-type ATPase [Post 89.3 3.4 7.4E-05 42.7 10.3 144 1-170 226-386 (693)
331 PRK11823 DNA repair protein Ra 89.2 0.4 8.6E-06 48.4 3.9 31 2-34 89-119 (446)
332 TIGR03574 selen_PSTK L-seryl-t 89.2 0.72 1.6E-05 42.6 5.3 15 1-15 7-21 (249)
333 COG2607 Predicted ATPase (AAA+ 89.1 1.7 3.6E-05 39.1 7.0 24 2-27 94-117 (287)
334 smart00370 LRR Leucine-rich re 89.1 0.34 7.5E-06 26.7 1.9 19 437-456 2-20 (26)
335 smart00369 LRR_TYP Leucine-ric 89.1 0.34 7.5E-06 26.7 1.9 19 437-456 2-20 (26)
336 PHA02244 ATPase-like protein 89.1 1.2 2.6E-05 43.2 6.7 15 1-15 127-141 (383)
337 PF01656 CbiA: CobQ/CobB/MinD/ 89.1 0.4 8.7E-06 42.2 3.5 35 2-38 8-42 (195)
338 TIGR00416 sms DNA repair prote 89.0 0.52 1.1E-05 47.6 4.6 31 2-34 103-133 (454)
339 TIGR03575 selen_PSTK_euk L-ser 89.0 0.91 2E-05 43.7 5.9 15 1-15 7-21 (340)
340 KOG0743 AAA+-type ATPase [Post 89.0 15 0.00033 36.4 14.1 15 1-15 243-257 (457)
341 COG1618 Predicted nucleotide k 89.0 0.3 6.6E-06 40.8 2.3 22 1-24 13-35 (179)
342 PF13671 AAA_33: AAA domain; P 88.9 0.26 5.5E-06 41.0 2.0 15 1-15 7-21 (143)
343 KOG0728 26S proteasome regulat 88.8 8.3 0.00018 34.9 11.2 26 1-33 189-214 (404)
344 PRK13531 regulatory ATPase Rav 88.8 1.5 3.2E-05 44.2 7.3 67 76-142 110-193 (498)
345 TIGR02902 spore_lonB ATP-depen 88.8 1.7 3.7E-05 45.0 8.2 71 73-143 175-276 (531)
346 PF14532 Sigma54_activ_2: Sigm 88.7 0.31 6.8E-06 40.3 2.3 41 73-113 69-110 (138)
347 cd03244 ABCC_MRP_domain2 Domai 88.5 4.3 9.3E-05 36.6 9.9 53 66-118 150-203 (221)
348 COG2109 BtuR ATP:corrinoid ade 88.5 3.6 7.8E-05 35.5 8.4 110 2-112 37-164 (198)
349 PRK12597 F0F1 ATP synthase sub 88.5 1.5 3.3E-05 44.0 7.3 81 2-84 152-248 (461)
350 PF00006 ATP-synt_ab: ATP synt 88.5 0.77 1.7E-05 41.2 4.8 75 2-82 24-114 (215)
351 cd00267 ABC_ATPase ABC (ATP-bi 88.4 1.3 2.7E-05 37.6 6.0 110 2-118 34-145 (157)
352 KOG0734 AAA+-type ATPase conta 88.4 2.3 5.1E-05 42.7 8.2 16 1-16 345-360 (752)
353 smart00534 MUTSac ATPase domai 88.3 0.6 1.3E-05 40.9 4.0 54 65-119 68-128 (185)
354 TIGR02858 spore_III_AA stage I 88.3 1.6 3.4E-05 40.8 6.9 108 1-117 119-233 (270)
355 COG5238 RNA1 Ran GTPase-activa 88.3 0.91 2E-05 41.4 5.0 112 352-472 88-225 (388)
356 cd02019 NK Nucleoside/nucleoti 88.3 0.31 6.8E-06 34.7 1.8 15 1-15 7-21 (69)
357 TIGR03878 thermo_KaiC_2 KaiC d 88.3 1.4 3E-05 41.0 6.5 33 1-35 44-76 (259)
358 PRK03839 putative kinase; Prov 88.3 0.27 5.9E-06 42.8 1.8 15 1-15 8-22 (180)
359 TIGR00064 ftsY signal recognit 88.2 1.6 3.5E-05 40.8 7.0 82 1-84 80-165 (272)
360 COG0542 clpA ATP-binding subun 88.2 2.3 4.9E-05 45.4 8.6 86 58-143 246-346 (786)
361 PRK12678 transcription termina 88.2 1.1 2.3E-05 45.9 6.0 82 1-84 424-514 (672)
362 PTZ00035 Rad51 protein; Provis 88.2 1.8 4E-05 41.8 7.5 48 1-49 126-177 (337)
363 COG0572 Udk Uridine kinase [Nu 88.1 0.92 2E-05 40.3 4.9 19 2-22 17-35 (218)
364 PRK06217 hypothetical protein; 88.1 0.68 1.5E-05 40.5 4.2 16 1-16 9-24 (183)
365 PF00448 SRP54: SRP54-type pro 88.1 1.2 2.6E-05 39.4 5.8 49 1-51 9-58 (196)
366 cd02027 APSK Adenosine 5'-phos 88.1 1.4 3E-05 37.1 5.9 15 1-15 7-21 (149)
367 TIGR01313 therm_gnt_kin carboh 88.1 2.9 6.3E-05 35.6 8.1 15 1-15 6-20 (163)
368 KOG1051 Chaperone HSP104 and r 88.0 1.7 3.6E-05 47.1 7.6 85 1-99 599-686 (898)
369 COG1192 Soj ATPases involved i 88.0 0.45 9.8E-06 44.3 3.2 31 2-34 12-43 (259)
370 PRK09519 recA DNA recombinatio 88.0 1.2 2.6E-05 47.7 6.5 76 1-83 68-148 (790)
371 KOG3347 Predicted nucleotide k 87.9 0.95 2.1E-05 37.3 4.4 60 2-72 16-75 (176)
372 PRK07414 cob(I)yrinic acid a,c 87.8 2.1 4.5E-05 36.9 6.7 111 2-113 30-158 (178)
373 PRK13538 cytochrome c biogenes 87.7 5.1 0.00011 35.6 9.7 57 65-121 139-197 (204)
374 PRK14722 flhF flagellar biosyn 87.6 1.2 2.7E-05 43.4 5.9 80 1-85 145-227 (374)
375 PRK08972 fliI flagellum-specif 87.6 1.8 3.8E-05 43.1 7.0 79 2-84 171-263 (444)
376 cd03263 ABC_subfamily_A The AB 87.5 4.4 9.6E-05 36.5 9.3 53 66-118 144-197 (220)
377 PRK06793 fliI flagellum-specif 87.4 2 4.2E-05 42.9 7.2 80 2-84 165-257 (432)
378 PHA02518 ParA-like protein; Pr 87.4 0.7 1.5E-05 41.3 4.0 35 2-38 10-44 (211)
379 PRK00625 shikimate kinase; Pro 87.4 0.33 7.2E-06 41.9 1.7 15 1-15 8-22 (173)
380 PRK09280 F0F1 ATP synthase sub 87.2 2.4 5.2E-05 42.5 7.8 81 2-84 153-249 (463)
381 PRK15429 formate hydrogenlyase 87.1 1.2 2.6E-05 47.9 6.2 102 2-112 408-520 (686)
382 cd03215 ABC_Carb_Monos_II This 87.1 7.9 0.00017 33.6 10.4 54 65-118 114-169 (182)
383 cd03281 ABC_MSH5_euk MutS5 hom 87.0 0.88 1.9E-05 40.9 4.3 49 71-119 106-160 (213)
384 PRK12724 flagellar biosynthesi 87.0 2.7 5.9E-05 41.6 7.8 15 1-15 231-245 (432)
385 KOG0735 AAA+-type ATPase [Post 87.0 14 0.00031 38.8 13.0 144 1-170 709-870 (952)
386 PRK05818 DNA polymerase III su 86.9 8.5 0.00018 35.4 10.5 58 73-130 88-147 (261)
387 cd01124 KaiC KaiC is a circadi 86.9 0.59 1.3E-05 40.9 3.1 32 1-34 7-38 (187)
388 CHL00206 ycf2 Ycf2; Provisiona 86.8 8.8 0.00019 45.2 12.6 70 71-140 1730-1814(2281)
389 COG2842 Uncharacterized ATPase 86.8 8.4 0.00018 35.9 10.4 94 1-103 102-195 (297)
390 PRK10867 signal recognition pa 86.8 1.7 3.6E-05 43.5 6.4 15 1-15 108-122 (433)
391 KOG3864 Uncharacterized conser 86.7 0.14 3.1E-06 44.4 -0.9 83 357-446 102-185 (221)
392 cd01132 F1_ATPase_alpha F1 ATP 86.7 2.3 5E-05 39.4 6.9 41 2-46 78-121 (274)
393 TIGR03324 alt_F1F0_F1_al alter 86.6 1.9 4.1E-05 43.6 6.7 41 2-46 171-214 (497)
394 PRK06762 hypothetical protein; 86.6 0.4 8.6E-06 41.1 1.8 15 1-15 10-24 (166)
395 COG0467 RAD55 RecA-superfamily 86.5 0.52 1.1E-05 43.9 2.6 31 2-34 32-62 (260)
396 COG0488 Uup ATPase components 86.3 2.2 4.7E-05 43.9 7.2 89 38-129 416-511 (530)
397 PF12775 AAA_7: P-loop contain 86.3 0.34 7.3E-06 45.4 1.3 72 1-86 41-113 (272)
398 PF07015 VirC1: VirC1 protein; 86.3 0.81 1.8E-05 41.1 3.6 31 2-34 11-41 (231)
399 cd03217 ABC_FeS_Assembly ABC-t 86.3 3.5 7.5E-05 36.6 7.7 57 61-117 110-168 (200)
400 PTZ00185 ATPase alpha subunit; 86.3 3.8 8.1E-05 41.6 8.5 81 2-84 198-300 (574)
401 cd02025 PanK Pantothenate kina 86.2 3.1 6.6E-05 37.6 7.4 15 1-15 7-21 (220)
402 PRK05703 flhF flagellar biosyn 86.2 4.6 0.0001 40.5 9.2 79 1-84 229-310 (424)
403 TIGR00959 ffh signal recogniti 86.1 1.6 3.5E-05 43.6 5.9 15 1-15 107-121 (428)
404 PRK06002 fliI flagellum-specif 86.1 3.1 6.8E-05 41.6 7.8 78 2-84 174-265 (450)
405 TIGR03499 FlhF flagellar biosy 86.0 2.5 5.4E-05 39.8 7.0 77 1-82 202-281 (282)
406 cd01136 ATPase_flagellum-secre 86.0 3.8 8.2E-05 39.3 8.1 42 2-47 78-120 (326)
407 PRK11608 pspF phage shock prot 85.7 1.9 4.2E-05 41.6 6.2 102 2-112 38-150 (326)
408 PF03969 AFG1_ATPase: AFG1-lik 85.6 0.7 1.5E-05 45.1 3.1 94 2-113 71-167 (362)
409 TIGR01039 atpD ATP synthase, F 85.5 2.4 5.1E-05 42.5 6.7 81 2-84 152-248 (461)
410 cd00227 CPT Chloramphenicol (C 85.5 0.52 1.1E-05 40.9 2.0 15 1-15 10-24 (175)
411 PRK13947 shikimate kinase; Pro 85.4 0.47 1E-05 40.9 1.7 15 1-15 9-23 (171)
412 cd02021 GntK Gluconate kinase 85.4 0.52 1.1E-05 39.6 1.9 15 1-15 7-21 (150)
413 cd03282 ABC_MSH4_euk MutS4 hom 85.3 1.7 3.6E-05 38.7 5.2 48 71-120 106-158 (204)
414 PF13604 AAA_30: AAA domain; P 85.3 0.55 1.2E-05 41.6 2.1 37 74-112 94-130 (196)
415 cd03369 ABCC_NFT1 Domain 2 of 85.3 9.7 0.00021 33.9 10.2 53 66-118 136-189 (207)
416 PRK12726 flagellar biosynthesi 85.2 6.8 0.00015 38.3 9.4 81 1-84 214-296 (407)
417 cd03243 ABC_MutS_homologs The 85.2 1.1 2.4E-05 39.9 4.0 47 72-120 107-158 (202)
418 PF00485 PRK: Phosphoribulokin 85.1 0.51 1.1E-05 41.7 1.8 74 1-77 7-87 (194)
419 TIGR01817 nifA Nif-specific re 85.1 4.3 9.3E-05 42.3 8.9 101 2-112 228-340 (534)
420 KOG0727 26S proteasome regulat 85.1 7.7 0.00017 35.1 8.9 21 1-23 197-217 (408)
421 PRK00889 adenylylsulfate kinas 85.0 0.65 1.4E-05 40.2 2.4 15 1-15 12-26 (175)
422 PF00910 RNA_helicase: RNA hel 85.0 0.4 8.6E-06 37.7 0.9 15 1-15 6-20 (107)
423 cd02042 ParA ParA and ParB of 85.0 0.55 1.2E-05 36.5 1.8 14 2-15 9-22 (104)
424 PRK00131 aroK shikimate kinase 84.9 0.51 1.1E-05 40.7 1.7 15 1-15 12-26 (175)
425 cd03253 ABCC_ATM1_transporter 84.8 9.4 0.0002 34.8 10.1 55 64-118 146-201 (236)
426 cd02028 UMPK_like Uridine mono 84.7 1.6 3.4E-05 38.0 4.6 15 1-15 7-21 (179)
427 PF13306 LRR_5: Leucine rich r 84.6 2.8 6.1E-05 33.8 6.0 99 378-491 7-109 (129)
428 COG1157 FliI Flagellar biosynt 84.6 5.3 0.00012 39.1 8.3 78 2-83 172-263 (441)
429 PF02367 UPF0079: Uncharacteri 84.5 0.57 1.2E-05 37.7 1.6 14 3-16 25-38 (123)
430 PTZ00301 uridine kinase; Provi 84.5 0.87 1.9E-05 40.7 3.0 15 1-15 11-25 (210)
431 COG1136 SalX ABC-type antimicr 84.4 15 0.00031 33.2 10.6 65 57-121 144-211 (226)
432 PTZ00088 adenylate kinase 1; P 84.4 1.3 2.8E-05 40.2 4.1 15 1-15 14-28 (229)
433 PRK08006 replicative DNA helic 84.3 6.2 0.00014 40.2 9.3 43 2-48 233-276 (471)
434 PF03029 ATP_bind_1: Conserved 84.3 0.89 1.9E-05 41.6 3.0 29 1-31 4-32 (238)
435 PRK12723 flagellar biosynthesi 84.3 8 0.00017 38.2 9.7 82 1-85 182-266 (388)
436 TIGR03496 FliI_clade1 flagella 84.3 3.2 6.9E-05 41.3 7.0 40 2-45 146-186 (411)
437 COG1131 CcmA ABC-type multidru 84.3 5.1 0.00011 38.0 8.2 53 66-118 147-202 (293)
438 PRK09099 type III secretion sy 84.3 3.1 6.6E-05 41.7 6.9 42 2-46 172-213 (441)
439 TIGR03600 phage_DnaB phage rep 84.2 6.3 0.00014 39.6 9.4 44 1-48 202-246 (421)
440 TIGR03498 FliI_clade3 flagella 84.2 2.7 5.8E-05 41.8 6.5 80 2-84 149-241 (418)
441 TIGR03497 FliI_clade2 flagella 84.1 3 6.4E-05 41.5 6.7 14 2-15 146-159 (413)
442 PRK13543 cytochrome c biogenes 84.1 14 0.00031 33.1 10.8 54 65-118 147-202 (214)
443 KOG2228 Origin recognition com 84.0 12 0.00025 35.7 10.0 139 1-143 57-219 (408)
444 COG0529 CysC Adenylylsulfate k 84.0 0.79 1.7E-05 39.0 2.3 20 1-22 31-50 (197)
445 PRK06547 hypothetical protein; 84.0 0.63 1.4E-05 40.2 1.8 15 1-15 23-37 (172)
446 COG1116 TauB ABC-type nitrate/ 83.8 2.6 5.7E-05 38.2 5.6 44 39-82 109-157 (248)
447 TIGR03305 alt_F1F0_F1_bet alte 83.7 3.6 7.9E-05 41.2 7.1 43 2-46 147-191 (449)
448 PRK00279 adk adenylate kinase; 83.7 3.8 8.2E-05 36.8 6.9 15 1-15 8-22 (215)
449 PF03796 DnaB_C: DnaB-like hel 83.6 4.8 0.0001 37.4 7.7 43 2-48 28-71 (259)
450 TIGR01818 ntrC nitrogen regula 83.5 4.5 9.7E-05 41.3 8.1 102 2-112 166-278 (463)
451 cd02036 MinD Bacterial cell di 83.5 0.87 1.9E-05 39.4 2.5 31 1-33 8-38 (179)
452 cd03233 ABC_PDR_domain1 The pl 83.5 7.9 0.00017 34.4 8.7 15 2-16 42-56 (202)
453 cd02034 CooC The accessory pro 83.4 3.4 7.4E-05 32.9 5.7 28 1-30 7-34 (116)
454 smart00487 DEXDc DEAD-like hel 83.4 3.9 8.5E-05 35.5 6.8 38 76-113 132-170 (201)
455 PRK09544 znuC high-affinity zi 83.3 11 0.00024 34.8 9.9 54 65-118 130-186 (251)
456 PRK05922 type III secretion sy 83.3 2.4 5.2E-05 42.2 5.7 79 2-84 166-258 (434)
457 KOG1532 GTPase XAB1, interacts 83.2 4.5 9.8E-05 37.1 6.8 76 1-78 27-121 (366)
458 PRK14269 phosphate ABC transpo 83.2 11 0.00023 34.7 9.8 55 63-117 150-205 (246)
459 cd02037 MRP-like MRP (Multiple 83.1 2.8 6.1E-05 36.0 5.5 29 2-32 9-37 (169)
460 COG3640 CooC CO dehydrogenase 83.0 1.5 3.2E-05 39.3 3.6 35 2-37 9-43 (255)
461 PRK03846 adenylylsulfate kinas 83.0 1 2.2E-05 40.0 2.7 15 1-15 32-46 (198)
462 COG0003 ArsA Predicted ATPase 82.9 1.3 2.9E-05 42.2 3.7 35 1-37 10-44 (322)
463 PLN03211 ABC transporter G-25; 82.9 9.5 0.00021 40.8 10.4 79 67-147 218-306 (659)
464 PRK08506 replicative DNA helic 82.9 8.5 0.00018 39.3 9.7 44 1-48 200-243 (472)
465 COG0488 Uup ATPase components 82.9 10 0.00022 39.2 10.1 64 62-128 160-224 (530)
466 COG1102 Cmk Cytidylate kinase 82.9 0.71 1.5E-05 38.7 1.5 37 1-50 8-44 (179)
467 PRK04040 adenylate kinase; Pro 82.8 0.83 1.8E-05 40.1 2.1 15 1-15 10-24 (188)
468 PRK05022 anaerobic nitric oxid 82.8 3.3 7.1E-05 42.8 6.8 102 2-112 219-331 (509)
469 TIGR02868 CydC thiol reductant 82.7 9.6 0.00021 39.7 10.3 46 65-110 480-526 (529)
470 PRK08927 fliI flagellum-specif 82.7 4.5 9.7E-05 40.4 7.3 79 2-84 167-259 (442)
471 cd02040 NifH NifH gene encodes 82.7 1.2 2.7E-05 41.6 3.4 34 2-37 10-43 (270)
472 TIGR01359 UMP_CMP_kin_fam UMP- 82.6 0.75 1.6E-05 40.1 1.8 15 1-15 7-21 (183)
473 COG3265 GntK Gluconate kinase 82.6 4 8.7E-05 33.7 5.7 17 2-20 4-20 (161)
474 cd00071 GMPK Guanosine monopho 82.4 0.93 2E-05 37.5 2.2 15 1-15 7-21 (137)
475 PRK09580 sufC cysteine desulfu 82.4 10 0.00023 34.8 9.4 54 65-118 155-210 (248)
476 TIGR03522 GldA_ABC_ATP gliding 82.4 11 0.00025 35.8 9.9 52 66-117 144-196 (301)
477 PRK13949 shikimate kinase; Pro 82.3 0.81 1.8E-05 39.4 1.8 15 1-15 9-23 (169)
478 COG1149 MinD superfamily P-loo 82.2 1 2.2E-05 41.2 2.4 31 2-34 11-41 (284)
479 PHA00729 NTP-binding motif con 82.2 0.77 1.7E-05 41.2 1.7 15 1-15 25-39 (226)
480 cd03232 ABC_PDR_domain2 The pl 82.2 7.5 0.00016 34.2 8.0 52 63-114 116-169 (192)
481 PRK06696 uridine kinase; Valid 82.1 0.79 1.7E-05 41.5 1.8 15 1-15 30-44 (223)
482 PRK06731 flhF flagellar biosyn 82.1 8 0.00017 36.1 8.4 80 2-85 84-166 (270)
483 PRK13231 nitrogenase reductase 82.0 1.6 3.5E-05 40.7 3.9 30 2-34 11-40 (264)
484 PRK06761 hypothetical protein; 82.0 1.7 3.6E-05 40.7 3.9 15 1-15 11-25 (282)
485 cd02024 NRK1 Nicotinamide ribo 82.0 0.8 1.7E-05 40.0 1.7 14 2-15 8-21 (187)
486 PF08303 tRNA_lig_kinase: tRNA 81.9 1.8 3.8E-05 36.6 3.5 43 2-48 8-50 (168)
487 cd03283 ABC_MutS-like MutS-lik 81.8 6.2 0.00014 34.9 7.3 46 72-119 104-154 (199)
488 PF02374 ArsA_ATPase: Anion-tr 81.8 1.4 2.9E-05 42.1 3.3 14 2-15 10-23 (305)
489 TIGR02322 phosphon_PhnN phosph 81.8 0.86 1.9E-05 39.6 1.8 15 1-15 9-23 (179)
490 PRK07594 type III secretion sy 81.6 4.9 0.00011 40.1 7.2 40 2-45 164-204 (433)
491 cd03289 ABCC_CFTR2 The CFTR su 81.5 5.3 0.00012 37.5 7.1 54 65-118 148-202 (275)
492 TIGR03411 urea_trans_UrtD urea 81.5 17 0.00037 33.2 10.5 53 66-118 154-207 (242)
493 PF02572 CobA_CobO_BtuR: ATP:c 81.5 0.92 2E-05 38.9 1.8 53 61-113 83-139 (172)
494 TIGR00235 udk uridine kinase. 81.4 0.88 1.9E-05 40.7 1.8 15 1-15 14-28 (207)
495 PRK11545 gntK gluconate kinase 81.4 0.91 2E-05 38.8 1.8 15 1-15 3-17 (163)
496 TIGR01360 aden_kin_iso1 adenyl 81.3 0.93 2E-05 39.6 1.9 15 1-15 11-25 (188)
497 cd00464 SK Shikimate kinase (S 81.3 0.92 2E-05 38.2 1.8 15 1-15 7-21 (154)
498 PRK05480 uridine/cytidine kina 81.2 0.9 2E-05 40.7 1.8 15 1-15 14-28 (209)
499 CHL00060 atpB ATP synthase CF1 81.2 4.1 8.9E-05 41.2 6.5 43 2-46 170-214 (494)
500 PF09848 DUF2075: Uncharacteri 81.1 3.7 8.1E-05 40.1 6.2 32 1-34 9-42 (352)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-60 Score=496.68 Aligned_cols=476 Identities=33% Similarity=0.542 Sum_probs=395.1
Q ss_pred CCCCcHHHHHHHHhcCcc-cccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCCh-hcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGD-VERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDL-VEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~l~~~l~~~r~Llv 78 (505)
|||+||||||++++++.. +.++|+.++||.+++.++...++.+|+..++....... ...++....+.+.|+++|++||
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 899999999999999876 88999999999999999999999999999986444333 2346778889999999999999
Q ss_pred EeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHH
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEK 157 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~ 157 (505)
+||||+.. .|+.+...+|...+||+|++|||+..++.. ++....+++..|+.+|||+||++.++.... ..++..++
T Consensus 267 LDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~ 343 (889)
T KOG4658|consen 267 LDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEE 343 (889)
T ss_pred Eecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHH
Confidence 99999987 599999999999999999999999999987 666778999999999999999999976543 34455899
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhh----hhcccCchhhHhhccccCChhhhhhhhhhccCC
Q 046115 158 IGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWEL----EAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFP 233 (505)
Q Consensus 158 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l----~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~ 233 (505)
+|++++++|+|+|||++++|+.|+.+.+..+|.++++...... ......++.++..||+.|+++.|.||+|||.||
T Consensus 344 lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFP 423 (889)
T KOG4658|consen 344 LAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFP 423 (889)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999998765442 223467889999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCCC-CCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHHHHHHHHhhc-----
Q 046115 234 KDYGIRKHKLIELWMAQGYLSE-KGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHDFAQYLCS----- 307 (505)
Q Consensus 234 ~~~~i~~~~l~~~w~~~~~~~~-~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv~~~~~~~~~----- 307 (505)
+++.++.+.++.+|+++|++.. .....+++.+++++.+|++++|+...... ++...|.|||+||++|..++.
T Consensus 424 ED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~ 501 (889)
T KOG4658|consen 424 EDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQ 501 (889)
T ss_pred cccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhcccccc
Confidence 9999999999999999999877 44678999999999999999999876644 455589999999999999999
Q ss_pred cceEEeecc-cCcccccccccccceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccc
Q 046115 308 NECLAVEIH-SGEELAISSFVEKKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLR 386 (505)
Q Consensus 308 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 386 (505)
.+....... ......-...+ ...++.++..+....++... .++.|++|.+.+|.. +.....+.+|..|+.|+
T Consensus 502 ~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 502 EENQIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLR 574 (889)
T ss_pred ccceEEECCcCccccccccch-hheeEEEEeccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceE
Confidence 555333322 11111111222 37899999999888777766 566899999999963 22233566788999999
Q ss_pred eEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCcee
Q 046115 387 ALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYL 466 (505)
Q Consensus 387 ~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 466 (505)
+|||+ .+....++|..++.|-+|+||+++++. +..+|..+++|..|.+|++..+.....+|.....|++|++|
T Consensus 575 VLDLs------~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 575 VLDLS------GNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred EEECC------CCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 99999 467789999999999999999999999 99999999999999999999988777887777779999999
Q ss_pred ecCCCcccccccccccCCccCCccceeEec
Q 046115 467 HNEDTGCLRYLPAGIGELIRLRRVREFVVG 496 (505)
Q Consensus 467 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 496 (505)
.+.... ...-...++++.+|+.|....+.
T Consensus 648 ~l~~s~-~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 648 RLPRSA-LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred Eeeccc-cccchhhHHhhhcccchhhheee
Confidence 987653 11111224445555555544443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-46 Score=412.14 Aligned_cols=446 Identities=22% Similarity=0.335 Sum_probs=315.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe---CCCC------------CHHHHHHHHHHHcCCCCCCChhcHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV---SEPF------------DEFRIARAIIESLTPGSAKDLVEFQSLMQH 65 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~---~~~~------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 65 (505)
|||+||||||+++|+ ++..+|++.+|++. .... ....++..++.++........... ..
T Consensus 215 ~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~ 288 (1153)
T PLN03210 215 SSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GA 288 (1153)
T ss_pred CCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH----HH
Confidence 799999999999999 78889999888753 1110 012344455555432211111111 35
Q ss_pred HHHHcCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeCCCCChhhHHHHHHHhhhC
Q 046115 66 IEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAIS 145 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 145 (505)
+++.++++|+||||||||+.. +|+.+.....++++|++||||||++.++..++..++|+++.++.+||++||+..||.
T Consensus 289 ~~~~L~~krvLLVLDdv~~~~--~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQD--VLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCHH--HHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 677789999999999997654 677777766777899999999999999877666789999999999999999999986
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhhcccCchhhHhhccccCCh-hhhh
Q 046115 146 GKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPS-KVKR 224 (505)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~L~~-~~~~ 224 (505)
... ++++..+++++|+++|+|+||||+++|++|+++ +..+|...+++.... .+..+..++.+||+.|++ ..|.
T Consensus 367 ~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~ 440 (1153)
T PLN03210 367 KNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKA 440 (1153)
T ss_pred CCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhh
Confidence 543 345678899999999999999999999999876 789999999875443 345799999999999986 6999
Q ss_pred hhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHHHHHHHH
Q 046115 225 CFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHDFAQY 304 (505)
Q Consensus 225 ~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv~~~~~~ 304 (505)
+|+++|+|+.+..++ .+..|.+.+... ++..++.|++++|++.... .+.||+++|+++++
T Consensus 441 ~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~ 500 (1153)
T PLN03210 441 IFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKE 500 (1153)
T ss_pred hhheehhhcCCCCHH---HHHHHHHhcCCC----------chhChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHH
Confidence 999999999875543 244455544332 2234889999999975321 58999999999999
Q ss_pred hhccceE-------EeecccCcccccccccccceeEEEEEecCCCccccccccCCCCCCCceEE----------------
Q 046115 305 LCSNECL-------AVEIHSGEELAISSFVEKKILHLLLTLRRGASVPISIWGNVTGLRGLRSL---------------- 361 (505)
Q Consensus 305 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L---------------- 361 (505)
++..+.. ...................++++.+.......+.. ....|.+|.+|+.|
T Consensus 501 i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 501 IVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred HHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee-cHHHHhcCccccEEEEecccccccccceee
Confidence 9876531 11100000000000011133333333222221111 01123344444444
Q ss_pred ---------------EecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccc
Q 046115 362 ---------------LVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI 426 (505)
Q Consensus 362 ---------------~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 426 (505)
.+.++.+.. +|..+ .+.+|+.|++. ++.+..+|..++.+++|++|+|++|..+
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~----lP~~f-~~~~L~~L~L~-------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRC----MPSNF-RPENLVKLQMQ-------GSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCC----CCCcC-CccCCcEEECc-------CccccccccccccCCCCCEEECCCCCCc
Confidence 444443322 33333 35677777777 6667788888888899999999988778
Q ss_pred cccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccceeEe
Q 046115 427 EKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVV 495 (505)
Q Consensus 427 ~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 495 (505)
..+|. ++.+++|+.|+|++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|+.|++..|
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 88886 8888999999999988888899888889999999999888788888766 6777777776544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.3e-38 Score=300.62 Aligned_cols=252 Identities=38% Similarity=0.635 Sum_probs=199.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC--ChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK--DLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
|||+||||||++++++..+..+|++++|++++...+...++..|+.+++..... ...+.++....+.+.++++++|||
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlV 106 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLV 106 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccceee
Confidence 799999999999999555889999999999999999999999999999866432 567778899999999999999999
Q ss_pred EeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCC-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHH
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGS-THVISVNVLSEMECWSVFQSLAISGKTIGKRENLEK 157 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~ 157 (505)
|||||+.. .|+.+...++.+..+|+||||||++.+...... ...+++++|+.+||++||.+.++... .......++
T Consensus 107 lDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~ 183 (287)
T PF00931_consen 107 LDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLED 183 (287)
T ss_dssp EEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCT
T ss_pred eeeecccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99998765 677777777777789999999999887665543 66899999999999999999986554 122334456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhh---cccCchhhHhhccccCChhhhhhhhhhccCCC
Q 046115 158 IGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEA---IEKGLLAPLLLSYNELPSKVKRCFSYCAVFPK 234 (505)
Q Consensus 158 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~---~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~ 234 (505)
.+++|++.|+|+||||+++|++++.+.+...|+..++........ ....+..++..||+.|+++.|.||+++|+||.
T Consensus 184 ~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~ 263 (287)
T PF00931_consen 184 LAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPE 263 (287)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCC
Confidence 789999999999999999999996654567888888765544432 34678899999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHcCCCCC
Q 046115 235 DYGIRKHKLIELWMAQGYLSE 255 (505)
Q Consensus 235 ~~~i~~~~l~~~w~~~~~~~~ 255 (505)
++.++.+.++.+|.+++++..
T Consensus 264 ~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 264 GVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp TS-EEHHHHHHHHTT-HHTC-
T ss_pred CceECHHHHHHHHHHCCCCcc
Confidence 999999999999999988765
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=6.1e-12 Score=139.29 Aligned_cols=268 Identities=17% Similarity=0.219 Sum_probs=166.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCC------------ChhcHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-PFDEFRIARAIIESLTPGSAK------------DLVEFQSLMQHIE 67 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~------------~~~~~~~~~~~l~ 67 (505)
++|.||||++.+++. .. +.++|+++.. ..+...+...++..+...... ...+.......+.
T Consensus 40 paG~GKTtl~~~~~~--~~----~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 40 PAGYGKTTLISQWAA--GK----NNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred CCCCCHHHHHHHHHH--hC----CCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 589999999999886 22 2688999864 446666666666666311111 1122233334444
Q ss_pred HHcC--CceEEEEEeCCCCCCccChhHHHHhhcC-CCCCcEEEEEeCchH-H--HHHhCCcceEeCC----CCChhhHHH
Q 046115 68 ECVA--GKKFLLVLDDVWNEDYYKWEPFYKCLKN-SLHESKILITTRKET-V--ARIMGSTHVISVN----VLSEMECWS 137 (505)
Q Consensus 68 ~~l~--~~r~LlvlDdv~~~~~~~~~~~~~~~~~-~~~~~~iLiTtr~~~-~--~~~~~~~~~~~l~----~l~~~ea~~ 137 (505)
..+. +.+++||+||+.+.+.......+..+.. ...+.+++||||... + ..........++. +|+.+|+.+
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ 193 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQ 193 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHH
Confidence 4443 5789999999987654455544444444 456678889999831 1 1111112245555 999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCC-HHHHHHHHhhhhhhhhhc-ccCchhhHh-hc
Q 046115 138 VFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNT-EKEWQNILENEIWELEAI-EKGLLAPLL-LS 214 (505)
Q Consensus 138 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~-~~~~~~~l~~~~~~l~~~-~~~~~~~l~-~s 214 (505)
+|....... -..+.+.++.+.|+|+|+++..++..++.... .... . ..+... ...+...+. ..
T Consensus 194 ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v 259 (903)
T PRK04841 194 FFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RRLAGINASHLSDYLVEEV 259 (903)
T ss_pred HHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----HhhcCCCchhHHHHHHHHH
Confidence 997654211 12455788999999999999999988755431 1111 1 111111 223455443 44
Q ss_pred cccCChhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeee
Q 046115 215 YNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKM 294 (505)
Q Consensus 215 ~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~ 294 (505)
++.|+++.+..++..|+++ .+..+.+.... + .+...+.+++|.+.+++....+.. + .+|++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~----------~~~~~~~L~~l~~~~l~~~~~~~~-~--~~yr~ 320 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G----------EENGQMRLEELERQGLFIQRMDDS-G--EWFRY 320 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C----------CCcHHHHHHHHHHCCCeeEeecCC-C--CEEeh
Confidence 8899999999999999986 34433332211 1 112467799999999964322111 1 26889
Q ss_pred hHHHHHHHHHhhc
Q 046115 295 HDIVHDFAQYLCS 307 (505)
Q Consensus 295 H~lv~~~~~~~~~ 307 (505)
|++++++++....
T Consensus 321 H~L~r~~l~~~l~ 333 (903)
T PRK04841 321 HPLFASFLRHRCQ 333 (903)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998763
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=4.1e-14 Score=115.89 Aligned_cols=146 Identities=29% Similarity=0.401 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+.++.++.+....+|+++. ++.+|+.|++.+|++.. +|..++++.+|+.|++. -+.+..+|.+|
T Consensus 34 ~ITrLtLSHNKl~~vppnia----~l~nlevln~~nnqie~----lp~~issl~klr~lnvg-------mnrl~~lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIA----ELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVG-------MNRLNILPRGF 98 (264)
T ss_pred hhhhhhcccCceeecCCcHH----Hhhhhhhhhcccchhhh----cChhhhhchhhhheecc-------hhhhhcCcccc
Confidence 55666666666665655554 66667777776666432 45556666677777666 55566666667
Q ss_pred cCCCCcceeeccCCccc-cccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 410 EKLLHLKYLNLKGQKKI-EKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
+.++-|+.|||..|... ..+|..+..+.-|+.|.++.|- .+.+|+.++++++|+.|.+..|. +-++|..++.++.|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHH
Confidence 77777777777666632 2566666666666666666666 67777777777777777777776 446777777777776
Q ss_pred ccce
Q 046115 489 RVRE 492 (505)
Q Consensus 489 ~L~~ 492 (505)
.|++
T Consensus 177 elhi 180 (264)
T KOG0617|consen 177 ELHI 180 (264)
T ss_pred HHhc
Confidence 6654
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=3.1e-14 Score=116.60 Aligned_cols=135 Identities=33% Similarity=0.434 Sum_probs=67.7
Q ss_pred eEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccc-ccccCcccc
Q 046115 332 LHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNL-IKEIPTNIE 410 (505)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~p~~~~ 410 (505)
..+.++++.++.+|.++. .++.|+.|++.-|.+.. +|.-|+.++-|++|||. .++. -..+|.+|.
T Consensus 59 evln~~nnqie~lp~~is----sl~klr~lnvgmnrl~~----lprgfgs~p~levldlt------ynnl~e~~lpgnff 124 (264)
T KOG0617|consen 59 EVLNLSNNQIEELPTSIS----SLPKLRILNVGMNRLNI----LPRGFGSFPALEVLDLT------YNNLNENSLPGNFF 124 (264)
T ss_pred hhhhcccchhhhcChhhh----hchhhhheecchhhhhc----CccccCCCchhhhhhcc------ccccccccCCcchh
Confidence 344444444444444332 45555555555444322 44445555555555555 1221 123455555
Q ss_pred CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccC
Q 046115 411 KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 483 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~ 483 (505)
.+..|+-|.|+.|. ..-+|+.++++.+||.|.++.|. +-.+|.+++.+..|+.|++.+|. +..+|+.+++
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr-l~vlppel~~ 194 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR-LTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce-eeecChhhhh
Confidence 55555555555555 45555555555555555555554 55555555555555555555554 4445554444
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.28 E-value=2.4e-10 Score=116.31 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=174.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCC------------ChhcHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-PFDEFRIARAIIESLTPGSAK------------DLVEFQSLMQHIE 67 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~------------~~~~~~~~~~~l~ 67 (505)
++|.|||||+.+.+. .. ..=..+.|+++.+ ..++..+..-++..+..-.+. ...+.....+.+.
T Consensus 45 PAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~ 121 (894)
T COG2909 45 PAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLL 121 (894)
T ss_pred CCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHH
Confidence 589999999999986 22 2335788999766 557888888888888632222 2233344455555
Q ss_pred HHcCC--ceEEEEEeCCCCCCccChhHHHHhhc-CCCCCcEEEEEeCchHHHHHhC---CcceEeC----CCCChhhHHH
Q 046115 68 ECVAG--KKFLLVLDDVWNEDYYKWEPFYKCLK-NSLHESKILITTRKETVARIMG---STHVISV----NVLSEMECWS 137 (505)
Q Consensus 68 ~~l~~--~r~LlvlDdv~~~~~~~~~~~~~~~~-~~~~~~~iLiTtr~~~~~~~~~---~~~~~~l----~~l~~~ea~~ 137 (505)
..+.+ ++..+||||..-........=..++. ...++..++||||.+--..... .....++ -.|+.+|+.+
T Consensus 122 ~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~ 201 (894)
T COG2909 122 NELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAA 201 (894)
T ss_pred HHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHH
Confidence 55533 68999999975544444444344433 4457889999999852211100 0112222 3489999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhhcccCchhh-Hhhccc
Q 046115 138 VFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAP-LLLSYN 216 (505)
Q Consensus 138 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-l~~s~~ 216 (505)
+|..... .+-....++.+++..+|++-|+..++-.++.+.+.+.-...+. ...+-+... ..-.++
T Consensus 202 fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld 267 (894)
T COG2909 202 FLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLD 267 (894)
T ss_pred HHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHh
Confidence 9977531 1112344789999999999999999999985544433222221 111222222 336789
Q ss_pred cCChhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehH
Q 046115 217 ELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHD 296 (505)
Q Consensus 217 ~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~ 296 (505)
.||++.|..++.+++++. +.. .+...... ++....++++|..+++.-.--++. -.+|+.|.
T Consensus 268 ~Lp~~l~~FLl~~svl~~---f~~-eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~---~~WfryH~ 328 (894)
T COG2909 268 RLPPELRDFLLQTSVLSR---FND-ELCNALTG------------EENGQAMLEELERRGLFLQRLDDE---GQWFRYHH 328 (894)
T ss_pred cCCHHHHHHHHHHHhHHH---hhH-HHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCC---CceeehhH
Confidence 999999999999999865 222 22222211 234667799999999965322211 12899999
Q ss_pred HHHHHHHHhhccc
Q 046115 297 IVHDFAQYLCSNE 309 (505)
Q Consensus 297 lv~~~~~~~~~~~ 309 (505)
++.+|.+.....+
T Consensus 329 LFaeFL~~r~~~~ 341 (894)
T COG2909 329 LFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHhhhccc
Confidence 9999999887764
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.4e-11 Score=137.36 Aligned_cols=136 Identities=21% Similarity=0.305 Sum_probs=97.2
Q ss_pred ccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccc
Q 046115 349 WGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEK 428 (505)
Q Consensus 349 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 428 (505)
+..+..+++|++|++.+|.+.+. +|..+.++++|++|+|+ ++...+.+|..++.+++|++|++++|...+.
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGK---IPNSLTNLTSLEFLTLA------SNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred ChHHhcCCCCCEEECccCccccc---CChhhhhCcCCCeeecc------CCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 33455677777777777765543 66667777777777776 3444456677777777788888777775557
Q ss_pred cchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 429 LPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 429 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
+|..++.+++|+.|++++|.....+|..++++++|++|++++|...+.+|..+.++++|+.|++.
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 77777777788888887777556777777777788888887777666777777777777777654
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.24 E-value=1.3e-11 Score=137.45 Aligned_cols=152 Identities=26% Similarity=0.247 Sum_probs=122.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
+++.+.+..+... ...+..+.++++|++|++.+|.+.+. +|..+.++.+|+.|+|+ ++...+.+|..+
T Consensus 165 ~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~------~n~l~~~~p~~l 232 (968)
T PLN00113 165 SLKVLDLGGNVLV---GKIPNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLG------YNNLSGEIPYEI 232 (968)
T ss_pred CCCEEECccCccc---ccCChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECc------CCccCCcCChhH
Confidence 4555555554432 23344556899999999999987654 77788999999999998 344556788889
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|++|++++|...+.+|..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 99999999999999866688888999999999999999866788888999999999999999877788888888898888
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 313 L~l~ 316 (968)
T PLN00113 313 LHLF 316 (968)
T ss_pred EECC
Confidence 8764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=9.6e-12 Score=115.38 Aligned_cols=146 Identities=25% Similarity=0.432 Sum_probs=120.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceE-EEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRS-LLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.++.+....+|.... .++.+.+ +.++.|..++ +|.+++.+.+|..|+|+ ++.+..+|..
T Consensus 389 ~Vt~VnfskNqL~elPk~L~----~lkelvT~l~lsnn~isf----v~~~l~~l~kLt~L~L~-------NN~Ln~LP~e 453 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLV----ELKELVTDLVLSNNKISF----VPLELSQLQKLTFLDLS-------NNLLNDLPEE 453 (565)
T ss_pred ceEEEecccchHhhhhhhhH----HHHHHHHHHHhhcCcccc----chHHHHhhhcceeeecc-------cchhhhcchh
Confidence 36777777777777766554 5555544 4455555544 78889999999999998 9999999999
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCccC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
++.+..|+.|+++.|+ ...+|..+..+.-|+++-.++|+ ++.+|+. +++|.+|.+|++.+|. +.++|+.+++|++|
T Consensus 454 ~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNL 530 (565)
T ss_pred hhhhhhhheecccccc-cccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCc-hhhCChhhccccce
Confidence 9999999999999998 88999988888888888778777 7877765 9999999999999887 78899999999999
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
++|.+.
T Consensus 531 ~hLeL~ 536 (565)
T KOG0472|consen 531 RHLELD 536 (565)
T ss_pred eEEEec
Confidence 988764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=3.8e-11 Score=117.37 Aligned_cols=147 Identities=23% Similarity=0.265 Sum_probs=74.8
Q ss_pred eeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcccc
Q 046115 331 ILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIE 410 (505)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~ 410 (505)
+..+.++.+.....|.++. .-+++-+|+|++|++... +.+.|-++..|-+|||+ ++.++.+|+.+.
T Consensus 105 Lt~lDLShNqL~EvP~~LE----~AKn~iVLNLS~N~IetI---Pn~lfinLtDLLfLDLS-------~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLE----YAKNSIVLNLSYNNIETI---PNSLFINLTDLLFLDLS-------NNRLEMLPPQIR 170 (1255)
T ss_pred ceeeecchhhhhhcchhhh----hhcCcEEEEcccCccccC---CchHHHhhHhHhhhccc-------cchhhhcCHHHH
Confidence 3444444444444444443 445555666666654322 22234455556666665 555666666665
Q ss_pred CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcC-ccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 411 KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQN-LRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
.|.+|++|.|++|+..-.--.++-.+.+|++|.+++++. +..+|.++-.|.+|+.++++.|. +..+|..+.++.+|+.
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRR 249 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhhe
Confidence 666666666665552110001111223333444443321 23456666666666666666665 5566666666666666
Q ss_pred cce
Q 046115 490 VRE 492 (505)
Q Consensus 490 L~~ 492 (505)
|++
T Consensus 250 LNL 252 (1255)
T KOG0444|consen 250 LNL 252 (1255)
T ss_pred ecc
Confidence 664
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=3.9e-08 Score=92.59 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=106.0
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHH----HHHHHHHHc-CCce
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQS----LMQHIEECV-AGKK 74 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~l~~~l-~~~r 74 (505)
++|+||||+++.+++ ... +.+ ..+|+ +....+..+++..++..++.+... .+... ..+.+.... .+++
T Consensus 51 ~~G~GKTtl~~~l~~--~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 51 EVGAGKTTLIRNLLK--RLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG--RDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred CCCCCHHHHHHHHHH--hcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHHHHHHHhCCCC
Confidence 479999999999998 333 211 12233 333456778888999888754332 22222 222333322 5678
Q ss_pred EEEEEeCCCCCCccChhHHHHhhc---CCCCCcEEEEEeCchHHHHHh----------CCcceEeCCCCChhhHHHHHHH
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLK---NSLHESKILITTRKETVARIM----------GSTHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~---~~~~~~~iLiTtr~~~~~~~~----------~~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
.+||+|+++......++.+..... .......|++|.... ..... .....+.+++++.+|..+++..
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~ 203 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEH 203 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHH
Confidence 999999998866444554433221 112233455555432 21111 1133678999999999999977
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 142 LAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.....+......-.++++..|++.++|.|..|+.++..+
T Consensus 204 ~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 204 RLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 653222111122345789999999999999999998876
No 13
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.00 E-value=1.3e-07 Score=94.25 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=156.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHHHHHHHHHHHcCC-CCCCChhcHHHHHHHHHHHcC--CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPFDEFRIARAIIESLTP-GSAKDLVEFQSLMQHIEECVA--GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~~l~--~~r~ 75 (505)
++|+|||++++.+++ +..... -..+++++....+...++..++.++.. .......+.++..+.+.+.+. +++.
T Consensus 63 ~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (394)
T PRK00411 63 PPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVL 140 (394)
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 479999999999998 444333 345678888778888999999999874 222223345666666666664 4578
Q ss_pred EEEEeCCCCCC----ccChhHHHHhhcCCC-CCcEEEEEeCchHHHHHhC-------CcceEeCCCCChhhHHHHHHHhh
Q 046115 76 LLVLDDVWNED----YYKWEPFYKCLKNSL-HESKILITTRKETVARIMG-------STHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 76 LlvlDdv~~~~----~~~~~~~~~~~~~~~-~~~~iLiTtr~~~~~~~~~-------~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+||+|+++.-. ...+..+...+.... ....+|.++.+........ ....+.+++++.++..+++...+
T Consensus 141 viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 141 IVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred EEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 99999996632 122333333322221 1233566665543322111 13467899999999999998765
Q ss_pred hCCCCCCCCchHHHHHHHHHHH----cCCChHHHHHHHHHhc----cC---CCHHHHHHHHhhhhhhhhhcccCchhhHh
Q 046115 144 ISGKTIGKRENLEKIGREIVKK----CKGLPLAAKTIASLLR----SK---NTEKEWQNILENEIWELEAIEKGLLAPLL 212 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~----~~g~Plal~~~~~~l~----~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 212 (505)
...-. ...-.++++..+++. .|..+.|+.++-.... +. -+.+.....++.. ....+.
T Consensus 221 ~~~~~--~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~~~ 288 (394)
T PRK00411 221 EEGFY--PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIVHLS 288 (394)
T ss_pred Hhhcc--cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHHHHH
Confidence 32110 011112333444443 4557777776654321 11 1444444444432 112234
Q ss_pred hccccCChhhhhhhhhhccCCC--CCCCChHHHHHHHH--HcCCCCCCCCCCHHHHHHHHHHHHHHccccccccc--CCC
Q 046115 213 LSYNELPSKVKRCFSYCAVFPK--DYGIRKHKLIELWM--AQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNK--YDD 286 (505)
Q Consensus 213 ~s~~~L~~~~~~~ll~la~f~~--~~~i~~~~l~~~w~--~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~--~~~ 286 (505)
-.+..|+.+++..+..++.... ...+....+..... +..... .........++++.|...|++..... +..
T Consensus 289 ~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~---~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~ 365 (394)
T PRK00411 289 EVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY---EPRTHTRFYEYINKLDMLGIINTRYSGKGGR 365 (394)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC---CcCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 5678899988888877664432 12345555443221 111110 11123456779999999999986543 223
Q ss_pred CCeeEeeeh
Q 046115 287 GEIYKCKMH 295 (505)
Q Consensus 287 ~~~~~~~~H 295 (505)
++...+..+
T Consensus 366 g~~~~~~~~ 374 (394)
T PRK00411 366 GRTRLISLS 374 (394)
T ss_pred CCeEEEEec
Confidence 444445443
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.8e-10 Score=96.13 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCCceEEEecCCCccccccchhHHhh-cCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFE-KLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~ 432 (505)
+...++.|++.+|.++.... +. .+.+|+.|+|+ ++.+..++ .+..+++|+.|++++|. ++.++..
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-------~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-------NNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T-------TS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC-------CCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 56678999999998765322 44 57899999999 88888886 47889999999999999 8888655
Q ss_pred h-hcCCCCcEEecCCCcCccccch--hccccccCceeecCCCcccccccc----cccCCccCCccceeEecCcC
Q 046115 433 L-CELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREFVVGGGY 499 (505)
Q Consensus 433 ~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~~~ 499 (505)
+ ..+++|+.|.+++|. +..+-. .+..+++|++|++.+|+.. ..+. .|..+++|+.|+...|...-
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHHH
Confidence 5 469999999999998 666543 4788999999999999854 3333 36889999999999888743
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.97 E-value=3.2e-11 Score=117.94 Aligned_cols=147 Identities=24% Similarity=0.300 Sum_probs=116.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.++.+.++.+....+|.-+. ++.+|+.|+|++|+++... -..+.+.+|+.|+|+ .+.+..+|..+
T Consensus 223 NL~dvDlS~N~Lp~vPecly----~l~~LrrLNLS~N~iteL~----~~~~~W~~lEtLNlS-------rNQLt~LP~av 287 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPECLY----KLRNLRRLNLSGNKITELN----MTEGEWENLETLNLS-------RNQLTVLPDAV 287 (1255)
T ss_pred hhhhccccccCCCcchHHHh----hhhhhheeccCcCceeeee----ccHHHHhhhhhhccc-------cchhccchHHH
Confidence 56666667776666665554 7788888888888776542 224567778888887 77888889889
Q ss_pred cCCCCcceeeccCCcc-ccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 410 EKLLHLKYLNLKGQKK-IEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
++|+.|+.|.+.+|+. ...+|+.|++|.+|+.+...+|. ++-+|+++..+++|+.|.++.|. +-.+|..|.-++.|.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcc
Confidence 9999999999888884 34788899999999999888887 89999999999999999999887 567898888888888
Q ss_pred cccee
Q 046115 489 RVREF 493 (505)
Q Consensus 489 ~L~~~ 493 (505)
.|++.
T Consensus 366 vLDlr 370 (1255)
T KOG0444|consen 366 VLDLR 370 (1255)
T ss_pred eeecc
Confidence 88765
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.91 E-value=4.6e-09 Score=117.90 Aligned_cols=133 Identities=27% Similarity=0.383 Sum_probs=102.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
+++.+.+..+....+|..+ .+.+|+.|.+.++.+.. +|..+..+.+|+.|+|+ .++.++.+|. +
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L~~s~l~~----L~~~~~~l~~Lk~L~Ls------~~~~l~~ip~-l 653 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-----RPENLVKLQMQGSKLEK----LWDGVHSLTGLRNIDLR------GSKNLKEIPD-L 653 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-----CccCCcEEECcCccccc----cccccccCCCCCEEECC------CCCCcCcCCc-c
Confidence 3455555555555555444 46789999999987653 55556788999999998 3555677774 7
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA 479 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 479 (505)
+.+++|+.|++++|..+..+|..++.+++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 888999999999998888999989999999999999998888998876 688888888888876666654
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.85 E-value=1.1e-06 Score=86.68 Aligned_cols=269 Identities=12% Similarity=0.072 Sum_probs=146.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCC------CceEEEEeCCCCCHHHHHHHHHHHcC---CCCCCChhcHHHHHHHHHHHc-
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF------EKRTWVCVSEPFDEFRIARAIIESLT---PGSAKDLVEFQSLMQHIEECV- 70 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~l~~~l- 70 (505)
++|+|||++++.+++ +..... -..+|+++....+...++..++.++. ........+.++....+...+
T Consensus 48 ~~GtGKT~l~~~~~~--~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 125 (365)
T TIGR02928 48 KTGTGKTAVTKYVMK--ELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN 125 (365)
T ss_pred CCCCCHHHHHHHHHH--HHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999997 332221 13568888887788889999999883 222222233445555555555
Q ss_pred -CCceEEEEEeCCCCCC---ccChhHHHHhh--cCC-CCCcEEEEEeCchHHHHHh----C-C--cceEeCCCCChhhHH
Q 046115 71 -AGKKFLLVLDDVWNED---YYKWEPFYKCL--KNS-LHESKILITTRKETVARIM----G-S--THVISVNVLSEMECW 136 (505)
Q Consensus 71 -~~~r~LlvlDdv~~~~---~~~~~~~~~~~--~~~-~~~~~iLiTtr~~~~~~~~----~-~--~~~~~l~~l~~~ea~ 136 (505)
.+++++||||+++.-. ...+..+.... ... +....++.+++........ . . ...+.+++.+.++..
T Consensus 126 ~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~ 205 (365)
T TIGR02928 126 ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELR 205 (365)
T ss_pred hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHH
Confidence 3568899999996642 11122222211 111 1334455555544332211 1 1 246889999999999
Q ss_pred HHHHHhhhCC-CCCCCCchHHHHHHHHHHHcCCChH-HHHHHHHHh----ccC---CCHHHHHHHHhhhhhhhhhcccCc
Q 046115 137 SVFQSLAISG-KTIGKRENLEKIGREIVKKCKGLPL-AAKTIASLL----RSK---NTEKEWQNILENEIWELEAIEKGL 207 (505)
Q Consensus 137 ~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l----~~~---~~~~~~~~~l~~~~~~l~~~~~~~ 207 (505)
+++...+... ....-.++..+.+..++....|.|- |+.++-... ..+ -+.+.....++.. -
T Consensus 206 ~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~----------~ 275 (365)
T TIGR02928 206 DILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI----------E 275 (365)
T ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------H
Confidence 9998776311 1111122333445566777778884 333322211 111 1333333333321 0
Q ss_pred hhhHhhccccCChhhhhhhhhhccCC--CCCCCChHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHHHHHHccccccccc
Q 046115 208 LAPLLLSYNELPSKVKRCFSYCAVFP--KDYGIRKHKLIELWMAQ-GYLSEKGAKEMEDIGEEYFNILASRSFFQDFNK 283 (505)
Q Consensus 208 ~~~l~~s~~~L~~~~~~~ll~la~f~--~~~~i~~~~l~~~w~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~ 283 (505)
.....-.+..|+.+++.++..++... .+..+....+...+... ..+. ........+.++++.|...|++.....
T Consensus 276 ~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 276 KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG--VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 12233466788888877766655322 22335555554422211 1111 112334667888999999999987543
No 18
>PF05729 NACHT: NACHT domain
Probab=98.82 E-value=2.6e-08 Score=86.32 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=81.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC------CCceEEEEeCCCCCHH---HHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN------FEKRTWVCVSEPFDEF---RIARAIIESLTPGSAKDLVEFQSLMQHIEECVA 71 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~------f~~~~wv~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 71 (505)
.+|+||||+++.++.. .... +...+|++.+...... .+...+..+... .. ........ .....
T Consensus 8 ~~G~GKStll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~---~~~~~~~~--~~~~~ 79 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQ--LAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPE-SI---APIEELLQ--ELLEK 79 (166)
T ss_pred CCCCChHHHHHHHHHH--HHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhcc-ch---hhhHHHHH--HHHHc
Confidence 3899999999999873 3222 3456677766544332 333444344331 11 11111111 11225
Q ss_pred CceEEEEEeCCCCCCcc-------ChhHHHHhhcC--CCCCcEEEEEeCchHH---HHHhCCcceEeCCCCChhhHHHHH
Q 046115 72 GKKFLLVLDDVWNEDYY-------KWEPFYKCLKN--SLHESKILITTRKETV---ARIMGSTHVISVNVLSEMECWSVF 139 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~-------~~~~~~~~~~~--~~~~~~iLiTtr~~~~---~~~~~~~~~~~l~~l~~~ea~~Lf 139 (505)
.++++||+|+++.-... .+..+...+.. ..++++++||+|.... .........+++.+|++++..+++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYL 159 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 68999999999553321 12233333333 2568999999999665 333344568999999999999999
Q ss_pred HHhh
Q 046115 140 QSLA 143 (505)
Q Consensus 140 ~~~~ 143 (505)
.++.
T Consensus 160 ~~~f 163 (166)
T PF05729_consen 160 RKYF 163 (166)
T ss_pred HHHh
Confidence 7653
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.76 E-value=4e-10 Score=104.80 Aligned_cols=119 Identities=29% Similarity=0.539 Sum_probs=92.4
Q ss_pred ccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcccc-CCCCcceeeccCCcc
Q 046115 347 SIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIE-KLLHLKYLNLKGQKK 425 (505)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~ 425 (505)
.+|+++++|..|..|++..|++.. +|+ |..+..|..|++. .+.++.+|...+ .+.++..||++.|+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~----lPe-f~gcs~L~Elh~g-------~N~i~~lpae~~~~L~~l~vLDLRdNk- 263 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRF----LPE-FPGCSLLKELHVG-------ENQIEMLPAEHLKHLNSLLVLDLRDNK- 263 (565)
T ss_pred cCChhhcchhhhHHHHhhhccccc----CCC-CCccHHHHHHHhc-------ccHHHhhHHHHhcccccceeeeccccc-
Confidence 345556688888888888888754 553 6777888888887 777888887766 78888888888888
Q ss_pred ccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccc
Q 046115 426 IEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 426 ~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i 481 (505)
++++|..++.+++|+.||+|+|. +..+|.+++++ .|+.|-+.||+ +..+-+.|
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~i 316 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP-LRTIRREI 316 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc-hHHHHHHH
Confidence 88888888888888888888888 88888888888 78888888887 33343333
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.75 E-value=1.5e-09 Score=105.61 Aligned_cols=126 Identities=21% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccch-
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPE- 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~- 431 (505)
+++.|+.|+++.|.+..+ .++.+.-..+|.+|+|+ ++.+..+++ .+..|..|+.|+|+.|. +..+..
T Consensus 291 gLt~L~~L~lS~NaI~ri---h~d~WsftqkL~~LdLs-------~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~ 359 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRI---HIDSWSFTQKLKELDLS-------SNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEG 359 (873)
T ss_pred ccchhhhhccchhhhhee---ecchhhhcccceeEecc-------ccccccCChhHHHHHHHhhhhcccccc-hHHHHhh
Confidence 555555555555554433 23334444455555555 444444432 23344444444444444 333322
Q ss_pred hhhcCCCCcEEecCCCcCccccch---hccccccCceeecCCCcccccccc-cccCCccCCccc
Q 046115 432 TLCELYNLERLNVDDCQNLRELPR---GIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVR 491 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~lp~---~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 491 (505)
.+..+.+|+.|||++|.....+.+ .+..|++|+.|++.||+ +.++|. .|..+++|++|+
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceec
Confidence 233444444444444443333322 13344444444444444 233332 244444444444
No 21
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.70 E-value=5.2e-08 Score=92.15 Aligned_cols=286 Identities=19% Similarity=0.163 Sum_probs=185.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.|||||||++-.+.. +...|. +++++++....+.......+...++.+..+..... ..+.....++|.++|+
T Consensus 22 ~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~----~~~~~~~~~rr~llvl 94 (414)
T COG3903 22 AGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAV----DTLVRRIGDRRALLVL 94 (414)
T ss_pred cCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHH----HHHHHHHhhhhHHHHh
Confidence 489999999988886 556675 45567777777777777777777876655433333 3455566788999999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeCCCCChh-hHHHHHHHhhhCCCC-CCCCchHHH
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEM-ECWSVFQSLAISGKT-IGKRENLEK 157 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l~~l~~~-ea~~Lf~~~~~~~~~-~~~~~~~~~ 157 (505)
||...-- ..-......+......-.++.|+|+.... .....+.++.++.. ++.++|...+.-... ..-......
T Consensus 95 dncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a 170 (414)
T COG3903 95 DNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAA 170 (414)
T ss_pred cCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCchH
Confidence 9984322 13334455566666667799999976543 34556777777766 788888655422111 122233456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhhc-------ccCchhhHhhccccCChhhhhhhhhhc
Q 046115 158 IGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAI-------EKGLLAPLLLSYNELPSKVKRCFSYCA 230 (505)
Q Consensus 158 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-------~~~~~~~l~~s~~~L~~~~~~~ll~la 230 (505)
.+..|++..+|.|++|..+++..+.-. ...-...+......+... +......+..||.-|....+-.+..++
T Consensus 171 ~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa 249 (414)
T COG3903 171 AVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLA 249 (414)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchh
Confidence 789999999999999999999887653 333333333322222222 246777899999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHHHHHHHHhhccc
Q 046115 231 VFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHDFAQYLCSNE 309 (505)
Q Consensus 231 ~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv~~~~~~~~~~~ 309 (505)
.|...+...... |.+.+-.. ....-.....+..+++.+++.-..... ...|+.-+.++.|+..+..+.
T Consensus 250 ~~~g~f~~~l~~----~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~---~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 250 VFVGGFDLGLAL----AVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLG---RARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhcccHHH----HHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhh---HHHHHHHHHHHHHHHHHHHhh
Confidence 998866554322 22221111 011223444567788888875433221 114777788888887766543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.8e-09 Score=104.92 Aligned_cols=123 Identities=29% Similarity=0.418 Sum_probs=87.6
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+..|+.|+++.|+++- +|..++.+ -|++|-++ ++.++.+|..++.+.+|..|+.+.|. +..+|+++
T Consensus 119 ~L~~lt~l~ls~NqlS~----lp~~lC~l-pLkvli~s-------NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSH----LPDGLCDL-PLKVLIVS-------NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhHHHHhhhccchhhc----CChhhhcC-cceeEEEe-------cCccccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 66777777777777654 44434433 46777777 77777777777777777777777777 77777777
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
+.+.+|+.|+++.|+ +..+|+++..|+ |..|+++.|+ +..+|-.|.+|..|++|.+
T Consensus 186 ~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNk-is~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNK-ISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCc-eeecchhhhhhhhheeeee
Confidence 777777777777777 777777776554 7777777776 5677777777777777654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=5.3e-08 Score=102.00 Aligned_cols=113 Identities=21% Similarity=0.285 Sum_probs=90.0
Q ss_pred CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcC
Q 046115 357 GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCEL 436 (505)
Q Consensus 357 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 436 (505)
.++.|.|.+|.+.+. +|..+..+.+|+.|+|+ ++...+.+|..++.+++|++|+|++|...+.+|..++++
T Consensus 419 ~v~~L~L~~n~L~g~---ip~~i~~L~~L~~L~Ls------~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGF---IPNDISKLRHLQSINLS------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCcccc---CCHHHhCCCCCCEEECC------CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 477888888887654 77778889999999998 344456788888899999999999998667888888999
Q ss_pred CCCcEEecCCCcCccccchhcccc-ccCceeecCCCccccccc
Q 046115 437 YNLERLNVDDCQNLRELPRGIGKL-RKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p 478 (505)
++|+.|+|++|.....+|..++.+ .++..+++.+|..+...|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988777888887654 467788888887555443
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=3.3e-07 Score=84.24 Aligned_cols=169 Identities=19% Similarity=0.130 Sum_probs=81.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHH-------------HHHHcCCCCC-----CChhcHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARA-------------IIESLTPGSA-----KDLVEFQSL 62 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-------------l~~~l~~~~~-----~~~~~~~~~ 62 (505)
+.|+|||+|++++.+ .....-..++|+...+.......... +...+..... .........
T Consensus 28 ~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (234)
T PF01637_consen 28 PRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSA 105 (234)
T ss_dssp STTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--
T ss_pred CCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHH
Confidence 479999999999998 45332224555555444322211111 1111111000 111222333
Q ss_pred HHHHHHHcC--CceEEEEEeCCCCCC------ccChhHHHHhhcC---CCCCcEEEEEeCchHHHHH--------hCCcc
Q 046115 63 MQHIEECVA--GKKFLLVLDDVWNED------YYKWEPFYKCLKN---SLHESKILITTRKETVARI--------MGSTH 123 (505)
Q Consensus 63 ~~~l~~~l~--~~r~LlvlDdv~~~~------~~~~~~~~~~~~~---~~~~~~iLiTtr~~~~~~~--------~~~~~ 123 (505)
...+.+.+. +++++||+|++.... ..-...+...+.. ..+.+.| ++.....+... .+...
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~ 184 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV-ITGSSDSLMEEFLDDKSPLFGRFS 184 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE-EEESSHHHHHHTT-TTSTTTT---
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE-EECCchHHHHHhhcccCccccccc
Confidence 333333332 345999999996544 1111223333333 3344444 44444433322 23344
Q ss_pred eEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 124 VISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 124 ~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.+.+++|+.+++++++....... ..- +..++...+|++.+||+|..|..
T Consensus 185 ~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 185 HIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 69999999999999998865332 111 22356679999999999988764
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=8.9e-08 Score=82.20 Aligned_cols=123 Identities=27% Similarity=0.273 Sum_probs=54.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
+.+.+.+..+.+..+..-.. .+.+|+.|++++|.++.... +..++.|+.|+++ ++.+..++..+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~----~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~-------~N~I~~i~~~l 83 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGA----TLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLS-------NNRISSISEGL 83 (175)
T ss_dssp ----------------S--T----T-TT--EEE-TTS--S--TT---------TT--EEE---------SS---S-CHHH
T ss_pred ccccccccccccccccchhh----hhcCCCEEECCCCCCccccC-----ccChhhhhhcccC-------CCCCCccccch
Confidence 44666777776665432111 47899999999999876432 6678999999999 88888886655
Q ss_pred -cCCCCcceeeccCCccccccc--hhhhcCCCCcEEecCCCcCccccchh----ccccccCceeecCC
Q 046115 410 -EKLLHLKYLNLKGQKKIEKLP--ETLCELYNLERLNVDDCQNLRELPRG----IGKLRKLMYLHNED 470 (505)
Q Consensus 410 -~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~ 470 (505)
..+++|+.|++++|+ +..+. ..++.+++|+.|++.+|+ +...+.+ +..+|+|+.||-..
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 468999999999998 54432 247889999999999999 6655653 78899999998543
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-07 Score=99.72 Aligned_cols=94 Identities=28% Similarity=0.420 Sum_probs=83.7
Q ss_pred cceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCc
Q 046115 385 LRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLM 464 (505)
Q Consensus 385 L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 464 (505)
++.|+|. ++...+.+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|.....+|..++++++|+
T Consensus 420 v~~L~L~------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECC------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 6778887 4555567899999999999999999996679999999999999999999997779999999999999
Q ss_pred eeecCCCcccccccccccCC
Q 046115 465 YLHNEDTGCLRYLPAGIGEL 484 (505)
Q Consensus 465 ~L~l~~~~~~~~~p~~i~~l 484 (505)
+|++++|.+.+.+|..++.+
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred EEECcCCcccccCChHHhhc
Confidence 99999999889999887653
No 27
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.9e-06 Score=80.03 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=87.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHH-HHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIE-ECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~r~Llvl 79 (505)
++|+||||||+.++. .....| ..++...+- ..+..+..+.-+ ....+++.+|++
T Consensus 56 PPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~g------------------vkdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 56 PPGTGKTTLARLIAG--TTNAAF-----EALSAVTSG------------------VKDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred CCCCCHHHHHHHHHH--hhCCce-----EEecccccc------------------HHHHHHHHHHHHHHHhcCCceEEEE
Confidence 589999999999998 555554 333322222 222333333332 233478999999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEE--EeCchHHH---HHhCCcceEeCCCCChhhHHHHHHHhhhCC-CCCC--C
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILI--TTRKETVA---RIMGSTHVISVNVLSEMECWSVFQSLAISG-KTIG--K 151 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLi--Ttr~~~~~---~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~-~~~~--~ 151 (505)
|.|.+-...+-+.++..+. +|.-|+| ||.++... .......++.+++|+.+|..+++.+..... .... .
T Consensus 111 DEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~ 187 (436)
T COG2256 111 DEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQI 187 (436)
T ss_pred ehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccc
Confidence 9998866545455544443 5666666 77775321 112345699999999999999998843222 2211 0
Q ss_pred CchHHHHHHHHHHHcCCChH
Q 046115 152 RENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 152 ~~~~~~~~~~i~~~~~g~Pl 171 (505)
..-.+++...++..++|---
T Consensus 188 ~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 188 IVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred ccCCHHHHHHHHHhcCchHH
Confidence 11234577788888888664
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.53 E-value=8.3e-06 Score=78.26 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=123.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcH----HHHHHHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEF----QSLMQHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~l~~~l~~~r~L 76 (505)
++|+|||+||+.+++ +....+ ..+... .......+...+..+....---.++. ....+.+...+.+.+..
T Consensus 38 p~G~GKT~la~~ia~--~~~~~~---~~~~~~-~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 38 PPGLGKTTLAHIIAN--EMGVNL---KITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD 111 (305)
T ss_pred CCCCCHHHHHHHHHH--HhCCCE---EEeccc-hhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhee
Confidence 589999999999998 443332 112111 11111222233333332210000000 11223344455555566
Q ss_pred EEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHh-CC-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCch
Q 046115 77 LVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIM-GS-THVISVNVLSEMECWSVFQSLAISGKTIGKREN 154 (505)
Q Consensus 77 lvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~-~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~ 154 (505)
+|+|+...... + . ....+.+-|..||+...+.... .. ...+.+++++.+|..+++...+...+. .-
T Consensus 112 ~v~~~~~~~~~--~---~---~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~ 179 (305)
T TIGR00635 112 IVIGKGPSARS--V---R---LDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV----EI 179 (305)
T ss_pred eeeccCccccc--e---e---ecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC----Cc
Confidence 66666543321 0 0 0112356677777765443322 11 346789999999999999887753322 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhcc------CC--CHHHHHHHHhhhhhhhhhcccCchhhHhhccccCChhhhhhh
Q 046115 155 LEKIGREIVKKCKGLPLAAKTIASLLRS------KN--TEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCF 226 (505)
Q Consensus 155 ~~~~~~~i~~~~~g~Plal~~~~~~l~~------~~--~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~L~~~~~~~l 226 (505)
.++++..|++.|+|.|-.+..++..+.. .. +.+..... ...+...+..+++..+.++
T Consensus 180 ~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~---------------l~~l~~~~~~l~~~~~~~L 244 (305)
T TIGR00635 180 EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA---------------LEMLMIDELGLDEIDRKLL 244 (305)
T ss_pred CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH---------------HHHhCCCCCCCCHHHHHHH
Confidence 3567889999999999766555543310 00 11111111 1114556788888888877
Q ss_pred hhh-ccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH-HHHHccccc
Q 046115 227 SYC-AVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFN-ILASRSFFQ 279 (505)
Q Consensus 227 l~l-a~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~Ll~ 279 (505)
..+ +.+..+ .+....+.... |. ....+..+++ .|++.+++.
T Consensus 245 ~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 245 SVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcc
Confidence 734 555433 45444433322 11 1234666678 699999996
No 29
>PRK06893 DNA replication initiation factor; Validated
Probab=98.53 E-value=1e-06 Score=80.33 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=90.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||.||..+++ +...+...+.|++...... ... ...+.+. +.-+||+|
T Consensus 47 ~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~~---~~~----------------------~~~~~~~-~~dlLilD 98 (229)
T PRK06893 47 GKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQY---FSP----------------------AVLENLE-QQDLVCLD 98 (229)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhhh---hhH----------------------HHHhhcc-cCCEEEEe
Confidence 479999999999998 5554555667887642100 000 1111222 23489999
Q ss_pred CCCCCC-ccChh-HHHHhhcCC-CCCcEEEE-EeCc---------hHHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 81 DVWNED-YYKWE-PFYKCLKNS-LHESKILI-TTRK---------ETVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 81 dv~~~~-~~~~~-~~~~~~~~~-~~~~~iLi-Ttr~---------~~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
|++... ...|+ .+...+... ..+..++| |++. +.+...+.....+++++++.++.++++++.+...+
T Consensus 99 Di~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 99 DLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 997642 22343 233333322 23455654 4443 34455555566899999999999999998876443
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
. . -.++++..|++.+.|..-.+..+-..+
T Consensus 179 l-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 179 I-E---LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred C-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2 1 224677889999988776665555444
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.52 E-value=2e-06 Score=83.18 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=125.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHH----HHHHHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQ----SLMQHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~l~~~l~~~r~L 76 (505)
++|+|||+||+.+++ +....+ .++. +........+..++..+.....--.++.+ ...+.+...+.+.+..
T Consensus 59 ppG~GKT~la~~ia~--~l~~~~---~~~~-~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 59 PPGLGKTTLANIIAN--EMGVNI---RITS-GPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLD 132 (328)
T ss_pred CCCccHHHHHHHHHH--HhCCCe---EEEe-cccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhccee
Confidence 589999999999998 444332 1222 11122222333444444322110001111 1122334444455555
Q ss_pred EEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhC-C-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCch
Q 046115 77 LVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMG-S-THVISVNVLSEMECWSVFQSLAISGKTIGKREN 154 (505)
Q Consensus 77 lvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~-~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~ 154 (505)
+++|+..+.... ...+ .+.+-|..|++...+..... . ...+.+++++.++..+++.+.+...+. .-
T Consensus 133 ~~l~~~~~~~~~-----~~~l---~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~ 200 (328)
T PRK00080 133 IMIGKGPAARSI-----RLDL---PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EI 200 (328)
T ss_pred eeeccCccccce-----eecC---CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----Cc
Confidence 666655332210 0011 12456677777544433221 1 246889999999999999987754332 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhhcccCchhhHhhccccCChhhhhhhh-hhccCC
Q 046115 155 LEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFS-YCAVFP 233 (505)
Q Consensus 155 ~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~L~~~~~~~ll-~la~f~ 233 (505)
.++++..|++.|+|.|-.+..+...+. .|...-.... -....-......+...+..|++..+.++. .+..|.
T Consensus 201 ~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~-I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 201 DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV-ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC-CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 346788999999999965544444321 1111000000 00000011223345677788888888886 555565
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH-HHHHccccc
Q 046115 234 KDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFN-ILASRSFFQ 279 (505)
Q Consensus 234 ~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~Ll~ 279 (505)
.+ .+..+.+.... ....+.+++.++ .|++.++++
T Consensus 274 ~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 274 GG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred CC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHHcCCcc
Confidence 44 56655554332 111234566677 899999996
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=9.8e-08 Score=102.35 Aligned_cols=131 Identities=32% Similarity=0.484 Sum_probs=104.3
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccc-cccccCcc-ccCCCCcceeeccCCccccccch
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNN-LIKEIPTN-IEKLLHLKYLNLKGQKKIEKLPE 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~ 431 (505)
.....|.+.+.+|.... ++.. .....|+.|-+. .+. .+...+.. |..++.|++|||++|..++.+|.
T Consensus 521 ~~~~~rr~s~~~~~~~~----~~~~-~~~~~L~tLll~------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH----IAGS-SENPKLRTLLLQ------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred chhheeEEEEeccchhh----ccCC-CCCCccceEEEe------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 44677888888887532 2221 223368888776 122 14455444 67899999999999998999999
Q ss_pred hhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccceeEec
Q 046115 432 TLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVG 496 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 496 (505)
.|+.|-+|++|+++++. +..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++...
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999999999988 89999999999999999999998777776666779999999998765
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.2e-08 Score=90.00 Aligned_cols=129 Identities=28% Similarity=0.280 Sum_probs=99.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.++.+.+.++..+.. -.+.++.|++++|.+.- +.+ +..+.+|+.|||+ +|.+.++-.+-
T Consensus 285 ~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~N~i~~----v~n-La~L~~L~~LDLS-------~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVK----LAPKLRRLILSQNRIRT----VQN-LAELPQLQLLDLS-------GNLLAECVGWH 348 (490)
T ss_pred hhhhccccccchhhhhhhhh----hccceeEEeccccceee----ehh-hhhcccceEeecc-------cchhHhhhhhH
Confidence 55666666676666655543 56889999999998653 333 6778899999998 67677766555
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccc--hhccccccCceeecCCCccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p 478 (505)
-+|.+++.|.|++|. +..+.. +++|.+|..||+++|+ ++.+. .+|+++|.|+++.+.+|+ +..+|
T Consensus 349 ~KLGNIKtL~La~N~-iE~LSG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETLSG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhhhh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 678899999999988 777766 8899999999999988 77664 368999999999999998 44444
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=1.3e-07 Score=92.49 Aligned_cols=165 Identities=21% Similarity=0.219 Sum_probs=110.3
Q ss_pred cccccccc-cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEeccccc----
Q 046115 321 LAISSFVE-KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRES---- 395 (505)
Q Consensus 321 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---- 395 (505)
.....++. ..+.++.+..+.+..+..+ .|.++.+|.+|.|+.|.++.. ++..|.++.+|+.|+|..+..
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~~---~F~~lnsL~tlkLsrNrittL---p~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLETG---HFDSLNSLLTLKLSRNRITTL---PQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred ccCCCCCCCCCceEEeeccccccccccc---cccccchheeeecccCccccc---CHHHhhhcchhhhhhccccceeeeh
Confidence 33334444 5788888888887766543 345777999999999988765 566677799999999873210
Q ss_pred ------CC-------ccccccccCc-cccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchhcccc
Q 046115 396 ------WP-------RNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRGIGKL 460 (505)
Q Consensus 396 ------~~-------~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 460 (505)
++ ..+.+..+-. .|-.|.++++|+|..|+ ++.+-. .+..|..|+.|++|+|.+-+.-+.++...
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 00 0111222211 23456678888888888 655543 45788889999999988334445667777
Q ss_pred ccCceeecCCCcccccccc-cccCCccCCcccee
Q 046115 461 RKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREF 493 (505)
Q Consensus 461 ~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 493 (505)
++|+.|++++|. +..+++ .|..|..|++|++-
T Consensus 317 qkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 317 QKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeEeccccc-cccCChhHHHHHHHhhhhccc
Confidence 899999999987 445554 47777777777754
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.46 E-value=4.7e-07 Score=95.62 Aligned_cols=102 Identities=29% Similarity=0.432 Sum_probs=64.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....+|..+. .+|++|++++|.++. +|..+. .+|+.|+|+ ++.+..+|..+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~------~nL~~L~Ls~N~Lts----LP~~l~--~~L~~L~Ls-------~N~L~~LP~~l 260 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ------GNIKTLYANSNQLTS----IPATLP--DTIQEMELS-------INRITELPERL 260 (754)
T ss_pred CCcEEEecCCCCCcCChhhc------cCCCEEECCCCcccc----CChhhh--ccccEEECc-------CCccCcCChhH
Confidence 66777777777776665442 478888888887664 333222 357777776 55566666554
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchh
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRG 456 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 456 (505)
. .+|++|++++|. +..+|..+. .+|+.|++++|. +..+|..
T Consensus 261 ~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~ 301 (754)
T PRK15370 261 P--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAH 301 (754)
T ss_pred h--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCccc
Confidence 2 467777777666 556665443 367777777765 5555543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=1e-08 Score=99.79 Aligned_cols=131 Identities=27% Similarity=0.385 Sum_probs=85.2
Q ss_pred EEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCC
Q 046115 335 LLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLH 414 (505)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~ 414 (505)
.++.+....+|.... .+..|..+.++.|.+.. +|..++++..|++|+|+ .+.+..+|..+|.|+
T Consensus 81 DlsrNR~~elp~~~~----~f~~Le~liLy~n~~r~----ip~~i~~L~~lt~l~ls-------~NqlS~lp~~lC~lp- 144 (722)
T KOG0532|consen 81 DLSRNRFSELPEEAC----AFVSLESLILYHNCIRT----IPEAICNLEALTFLDLS-------SNQLSHLPDGLCDLP- 144 (722)
T ss_pred hccccccccCchHHH----HHHHHHHHHHHhcccee----cchhhhhhhHHHHhhhc-------cchhhcCChhhhcCc-
Confidence 334444444444443 45566666666665532 55566777777777776 666666777676666
Q ss_pred cceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCC
Q 046115 415 LKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 484 (505)
Q Consensus 415 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 484 (505)
|+.|-+++|+ ++.+|..++.+..|..||.+.|. +..+|..++++.+|+.|++..|. +..+|..+..|
T Consensus 145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L 211 (722)
T KOG0532|consen 145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL 211 (722)
T ss_pred ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC
Confidence 7777777776 77777777766777777777766 77777777777777777777665 45666665543
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=6.1e-07 Score=94.81 Aligned_cols=124 Identities=24% Similarity=0.393 Sum_probs=95.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
....+.+.......+|..++ ++|+.|++.+|.++. +|..+. .+|+.|+++ ++.+..+|..+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~Lts----LP~~l~--~nL~~L~Ls-------~N~LtsLP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP------EQITTLILDNNELKS----LPENLQ--GNIKTLYAN-------SNQLTSIPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCCcccc------cCCcEEEecCCCCCc----CChhhc--cCCCEEECC-------CCccccCChhh
Confidence 44566666666676776554 579999999998875 444333 589999998 66778888755
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i 481 (505)
..+|+.|+|++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|. +..+|..+
T Consensus 240 --~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l 302 (754)
T PRK15370 240 --PDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHL 302 (754)
T ss_pred --hccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccc
Confidence 3589999999999 789998764 589999999988 788998764 589999999997 45666543
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.42 E-value=6.2e-06 Score=88.91 Aligned_cols=219 Identities=15% Similarity=0.144 Sum_probs=137.3
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCC------CCcEEEEEeCch--HHHHHhCCcceEeCCCCChhhHHHHHHHh
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSL------HESKILITTRKE--TVARIMGSTHVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~------~~~~iLiTtr~~--~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
+.++.++|+||+.|.+.....-+...+..-. +....+.|.+.. .+.........+.+.+|+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 4469999999998877655544443333221 122333344432 22222344568999999999999999876
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCC------CHHHHHHHHhhhhhhhhhcccCchhhHhhccc
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKN------TEKEWQNILENEIWELEAIEKGLLAPLLLSYN 216 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~------~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~ 216 (505)
...... ........|+++..|+|+.+..+-+.+.... +...|+.-+... .... ....+...+....+
T Consensus 232 l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~-~~~~vv~~l~~rl~ 304 (849)
T COG3899 232 LGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILA-TTDAVVEFLAARLQ 304 (849)
T ss_pred hCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCch-hhHHHHHHHHHHHh
Confidence 532122 2234578899999999999999999887742 334444332211 1111 11224556888999
Q ss_pred cCChhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCC-CCCeeEe---
Q 046115 217 ELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYD-DGEIYKC--- 292 (505)
Q Consensus 217 ~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~-~~~~~~~--- 292 (505)
.|+...|+.+...||+.. .|+...+...+- ......+.+.++.|....++...+... .......
T Consensus 305 kL~~~t~~Vl~~AA~iG~--~F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 305 KLPGTTREVLKAAACIGN--RFDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred cCCHHHHHHHHHHHHhCc--cCCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence 999999999999999976 455666655441 134566777788887777765432111 1111122
Q ss_pred eehHHHHHHHHHhhcc
Q 046115 293 KMHDIVHDFAQYLCSN 308 (505)
Q Consensus 293 ~~H~lv~~~~~~~~~~ 308 (505)
..|+.|++.+-....+
T Consensus 373 F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 373 FLHDRVQQAAYNLIPE 388 (849)
T ss_pred hhHHHHHHHHhccCch
Confidence 6899999988665543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=8.1e-08 Score=86.38 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=99.9
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.-..|+.|++++|.++. +.....-.++++.|+++ .|.+....+ +..|++|..|||++|. ++++...=
T Consensus 282 TWq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS-------~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ----IDESVKLAPKLRRLILS-------QNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhh----hhhhhhhccceeEEecc-------ccceeeehh-hhhcccceEeecccch-hHhhhhhH
Confidence 34679999999998876 44445667899999999 666666554 7889999999999999 88887744
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccc--cccccCCccCCcccee
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYL--PAGIGELIRLRRVREF 493 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~~~ 493 (505)
-+|.|.++|+|++|. ++.+ .+++++.+|..|++++|+ +..+ ...|++++-|+++.+.
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhc
Confidence 689999999999988 7877 478999999999999997 4444 2468888888877654
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=4.5e-08 Score=100.58 Aligned_cols=110 Identities=28% Similarity=0.431 Sum_probs=71.6
Q ss_pred CCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhh
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLC 434 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 434 (505)
...|.+|++++|..+. .|..+..+.+|+.|+++ .+.+.+.|.+++.+.+|++|.|.+|. ++.+|.+++
T Consensus 44 ~v~L~~l~lsnn~~~~----fp~~it~l~~L~~ln~s-------~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~ 111 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS----FPIQITLLSHLRQLNLS-------RNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASIS 111 (1081)
T ss_pred eeeeEEeecccccccc----CCchhhhHHHHhhcccc-------hhhHhhCchhhhhhhcchhheeccch-hhcCchhHH
Confidence 4446677777766554 34446666667777776 66666667666677777777777666 667777677
Q ss_pred cCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccc
Q 046115 435 ELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYL 477 (505)
Q Consensus 435 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 477 (505)
.+.+|+.|++++|. ...+|.-+..+..+..+..++|..+.++
T Consensus 112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhh
Confidence 77777777777766 6666666666666666666666333333
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.35 E-value=1.3e-07 Score=97.23 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=57.6
Q ss_pred cCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccccc
Q 046115 350 GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKL 429 (505)
Q Consensus 350 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l 429 (505)
+-+.++++|+.|.|++|.+..+ +...+.++..|+.|+|+ ++.++.+|..+..++.|++|-..+|. +..+
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~f---pas~~~kle~LeeL~LS-------GNkL~~Lp~tva~~~~L~tL~ahsN~-l~~f 445 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSF---PASKLRKLEELEELNLS-------GNKLTTLPDTVANLGRLHTLRAHSNQ-LLSF 445 (1081)
T ss_pred hhhccccceeeeeecccccccC---CHHHHhchHHhHHHhcc-------cchhhhhhHHHHhhhhhHHHhhcCCc-eeec
Confidence 3344555555555555554432 33344555555555555 55555555555555555555555555 5555
Q ss_pred chhhhcCCCCcEEecCCCcCcc-ccchhccccccCceeecCCCc
Q 046115 430 PETLCELYNLERLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~ 472 (505)
| ++.+++.|+.+|++.|.... .+|..... ++|++|+++||.
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 5 35566666666666555221 22222211 566666666664
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.9e-07 Score=63.51 Aligned_cols=58 Identities=28% Similarity=0.528 Sum_probs=40.3
Q ss_pred CCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCc
Q 046115 413 LHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 413 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 472 (505)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 357777777776 666664 45677777777777777 566654 46777777777777775
No 42
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.32 E-value=3.6e-06 Score=88.68 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=17.5
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSW 370 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 370 (505)
.+..+.+..+....+|. .+++|++|++.+|.++.
T Consensus 223 ~L~~L~L~~N~Lt~LP~-------lp~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTS 256 (788)
T ss_pred CCCEEEccCCcCCCCCC-------CCCCCcEEEecCCccCc
Confidence 45555555555554432 23456666666665543
No 43
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.29 E-value=7e-07 Score=93.94 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=61.0
Q ss_pred cccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhcccccc
Q 046115 383 TCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRK 462 (505)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 462 (505)
.+|+.|+++ ++.+..+|.. .++|+.|++++|+ +..+|.. +.+|+.|++++|. +..+|..+.++++
T Consensus 382 ~~L~~LdLs-------~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~ 446 (788)
T PRK15387 382 SGLKELIVS-------GNRLTSLPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSS 446 (788)
T ss_pred cccceEEec-------CCcccCCCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccC
Confidence 356777776 5556666643 3567788888887 6677753 3457778888887 7788888888888
Q ss_pred CceeecCCCcccccccccccC
Q 046115 463 LMYLHNEDTGCLRYLPAGIGE 483 (505)
Q Consensus 463 L~~L~l~~~~~~~~~p~~i~~ 483 (505)
|+.|++++|++.+..|..+.+
T Consensus 447 L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCeEECCCCCCCchHHHHHHH
Confidence 888888888876666555533
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=9.8e-07 Score=73.03 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=73.5
Q ss_pred CCCCcHHHHHHHHhcCcccccC-----CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCc-e
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-----FEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGK-K 74 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-r 74 (505)
.+|+|||++++++++ ..... -..++|+++....+...+...++.+++..... ..+..+..+.+.+.+.+. .
T Consensus 12 ~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~l~~~~~ 88 (131)
T PF13401_consen 12 PPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLIDALDRRRV 88 (131)
T ss_dssp -TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHHHHHCTE
T ss_pred CCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHHHHhcCC
Confidence 379999999999998 33322 34567999888889999999999999855544 445555667777777554 4
Q ss_pred EEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCc
Q 046115 75 FLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 75 ~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
.+||+|+++.- ....++.+.. +.+ ..+.++++..+.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred eEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 69999999665 4333344433 333 566777777664
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.28 E-value=9.9e-06 Score=74.06 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=86.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ +........+++++..-.+.. . .+...+.+ .-+||+|
T Consensus 46 ~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~~~---~----------------------~~~~~~~~-~~lLvID 97 (226)
T TIGR03420 46 ESGSGKSHLLQAACA--AAEERGKSAIYLPLAELAQAD---P----------------------EVLEGLEQ-ADLVCLD 97 (226)
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHHhH---H----------------------HHHhhccc-CCEEEEe
Confidence 479999999999998 443334455677654321100 0 01111222 2389999
Q ss_pred CCCCCCccC--hhHHHHhhcCC-CCCcEEEEEeCchH---------HHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 81 DVWNEDYYK--WEPFYKCLKNS-LHESKILITTRKET---------VARIMGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 81 dv~~~~~~~--~~~~~~~~~~~-~~~~~iLiTtr~~~---------~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
|++...... ...+...+... ..+..+++||+... +...+.....+.+++++.++...++.........
T Consensus 98 di~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~ 177 (226)
T TIGR03420 98 DVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL 177 (226)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC
Confidence 997643221 33344433321 23347888887532 2222222457899999999989988765432111
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.-.++++..+++.+.|.|..+..+...+
T Consensus 178 ----~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 178 ----QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred ----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1234667888888999998776665443
No 46
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.20 E-value=2.7e-05 Score=68.86 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+.+-++|+||+..........+...+.+....+.++++|++. .+...+ .....+.+.+++.++..+.+.... .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG-----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC-----C
Confidence 456789999997766556777888887766666676666653 332222 234589999999999999887751 1
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.++.+..+++.++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 14668899999999885
No 47
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=5.4e-06 Score=68.17 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
+.|+|||||+++++.+ .. .-..++++++...........+ ..+.+.+....++.++++|
T Consensus 10 ~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~i~iD 68 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLADPD------------------LLEYFLELIKPGKKYIFID 68 (128)
T ss_pred CCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHhhhh------------------hHHHHHHhhccCCcEEEEe
Confidence 3699999999999973 22 3356777876653221100000 1222333333477899999
Q ss_pred CCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHH-----h-CCcceEeCCCCChhh
Q 046115 81 DVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARI-----M-GSTHVISVNVLSEME 134 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~-----~-~~~~~~~l~~l~~~e 134 (505)
+++... .|...+..+.+..+..+|++|+........ . +....+++.+|+..|
T Consensus 69 Eiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 69 EIQYLP--DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhhhc--cHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 996653 788888888887777899999998665532 1 224577899998877
No 48
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.17 E-value=1.7e-06 Score=83.72 Aligned_cols=157 Identities=19% Similarity=0.139 Sum_probs=98.4
Q ss_pred ceeEEEEEecCCCc-cccccccCCCCCCCceEEEecCCCcccc-ccchhHHhhcC-cccceEEecccccCCcccccc---
Q 046115 330 KILHLLLTLRRGAS-VPISIWGNVTGLRGLRSLLVKSDEYSWS-SEVLPQLFEKL-TCLRALELQVRESWPRNNLIK--- 403 (505)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~--- 403 (505)
++..+.+..+.... .+..+..-... ++|+.|.+++|.++.. ...+...+..+ .+|+.|+++ ++.+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-------~n~l~~~~ 153 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-------RNRLEGAS 153 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-------CCcCCchH
Confidence 66777776665542 12222111112 4599999999987631 11234446666 889999998 33333
Q ss_pred --ccCccccCCCCcceeeccCCcccc----ccchhhhcCCCCcEEecCCCcCc----cccchhccccccCceeecCCCcc
Q 046115 404 --EIPTNIEKLLHLKYLNLKGQKKIE----KLPETLCELYNLERLNVDDCQNL----RELPRGIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 404 --~~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~ 473 (505)
.++..+..+++|++|++++|.... .++..+..+++|+.|++++|... ..++..+..+++|++|++++|..
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 344456778899999999998331 34455666789999999998732 23444567788999999999975
Q ss_pred ccccccccc-----CCccCCccceeE
Q 046115 474 LRYLPAGIG-----ELIRLRRVREFV 494 (505)
Q Consensus 474 ~~~~p~~i~-----~l~~L~~L~~~~ 494 (505)
...-+..+. ..+.|+.|++..
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccC
Confidence 432222221 135666666543
No 49
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.16 E-value=1.2e-06 Score=84.61 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=100.4
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCC-CCceEEEecCCCccccc-cchhHHhhcCcccceEEecccccCCcccccc---
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGL-RGLRSLLVKSDEYSWSS-EVLPQLFEKLTCLRALELQVRESWPRNNLIK--- 403 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--- 403 (505)
.+..+.+..+....... .+...+..+ ++|+.|++.+|.+++.. ..++..+..+++|+.|+++ ++.+.
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~-------~n~l~~~~ 181 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA-------NNGIGDAG 181 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc-------CCCCchHH
Confidence 37777777766542111 112223356 89999999999987421 1255567778899999998 33333
Q ss_pred --ccCccccCCCCcceeeccCCccc----cccchhhhcCCCCcEEecCCCcCccccchhc-c----ccccCceeecCCCc
Q 046115 404 --EIPTNIEKLLHLKYLNLKGQKKI----EKLPETLCELYNLERLNVDDCQNLRELPRGI-G----KLRKLMYLHNEDTG 472 (505)
Q Consensus 404 --~~p~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~----~l~~L~~L~l~~~~ 472 (505)
.++..+..+++|++|++++|... ..++..+..+++|+.|++++|.....-+..+ . ..++|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 34445566789999999999832 2345556788999999999998332112222 1 23799999999997
Q ss_pred cc----ccccccccCCccCCccce
Q 046115 473 CL----RYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 473 ~~----~~~p~~i~~l~~L~~L~~ 492 (505)
+. ..++..+..+++|+.+++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEEC
Confidence 54 223334445555555543
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.15 E-value=0.00014 Score=75.93 Aligned_cols=178 Identities=9% Similarity=0.030 Sum_probs=95.9
Q ss_pred CCCCcHHHHHHHHhcCcccc-----cCCC--ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC--
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-----RNFE--KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA-- 71 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-----~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-- 71 (505)
++|.|||+.++.+++ ++. .... .+++|++....+...++..|..++............+....+...+.
T Consensus 789 ~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~ 866 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD 866 (1164)
T ss_pred CCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc
Confidence 489999999999987 332 1222 35688888888888899999998853333333334445555555442
Q ss_pred -CceEEEEEeCCCCCCccChhHHHHhhcCC-CCCcEEEE--EeCchH----HHHHhCC---cceEeCCCCChhhHHHHHH
Q 046115 72 -GKKFLLVLDDVWNEDYYKWEPFYKCLKNS-LHESKILI--TTRKET----VARIMGS---THVISVNVLSEMECWSVFQ 140 (505)
Q Consensus 72 -~~r~LlvlDdv~~~~~~~~~~~~~~~~~~-~~~~~iLi--Ttr~~~----~~~~~~~---~~~~~l~~l~~~ea~~Lf~ 140 (505)
+...+||||+++.-....-+.+...+.+. ..+++|+| +|.+.+ +...+.. ...+...+.+.++-.+++.
T Consensus 867 ~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 867 NRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred cccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHH
Confidence 23468999999653211112222222221 23444444 343311 1122111 2246679999999999998
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 141 SLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
..+.........+..+-+|+.++..-|-.=.||.++-.+.
T Consensus 947 ~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 947 ERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 8775322212222222333333333344445555554443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.3e-06 Score=85.41 Aligned_cols=123 Identities=32% Similarity=0.512 Sum_probs=58.6
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+++|+.|.+..|.++. +|........|+.|+++ ++.+..+|..+..+..|++|.+++|. ....+..+
T Consensus 161 ~l~~L~~L~l~~N~l~~----l~~~~~~~~~L~~L~ls-------~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~ 228 (394)
T COG4886 161 NLPNLKNLDLSFNDLSD----LPKLLSNLSNLNNLDLS-------GNKISDLPPEIELLSALEELDLSNNS-IIELLSSL 228 (394)
T ss_pred ccccccccccCCchhhh----hhhhhhhhhhhhheecc-------CCccccCchhhhhhhhhhhhhhcCCc-ceecchhh
Confidence 44444444444444332 22212234444444444 44444444444444445555555554 33333334
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccc
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVR 491 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 491 (505)
.++.++..+.+.+|+ +..+|..++.+++|+.|++++|. +..++. ++.+.+|+.|.
T Consensus 229 ~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 229 SNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELD 283 (394)
T ss_pred hhcccccccccCCce-eeeccchhccccccceecccccc-cccccc-ccccCccCEEe
Confidence 555555555555544 44445555666666666666665 334443 44555554444
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.06 E-value=6.6e-05 Score=75.00 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=85.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHH-cCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEEC-VAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~r~Llvl 79 (505)
++|+||||||+.+++ .....| +.++........++.++.. .... ..+++.+|++
T Consensus 44 ppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~~ir~ii~~------------------~~~~~~~g~~~vL~I 98 (413)
T PRK13342 44 PPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVKDLREVIEE------------------ARQRRSAGRRTILFI 98 (413)
T ss_pred CCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHHHHHHHHHH------------------HHHhhhcCCceEEEE
Confidence 489999999999998 333332 3222211111112222221 1111 1357789999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEE--EeCchH--HHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCch
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILI--TTRKET--VAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKREN 154 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLi--Ttr~~~--~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~ 154 (505)
|+++.......+.+...+.. +..++| ||.++. +.. .......+.+.+++.++...++.+....... ....-
T Consensus 99 DEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i 174 (413)
T PRK13342 99 DEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVEL 174 (413)
T ss_pred echhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCC
Confidence 99987654455555555443 444444 344432 111 1223468899999999999999875432111 00122
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHH
Q 046115 155 LEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 155 ~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
.+++...+++.|+|.+..+..+..
T Consensus 175 ~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 175 DDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356788899999999876544443
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=8.6e-05 Score=78.39 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=71.1
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|++.......+..+++.+......+++|++|.+ ..+... ......+.+.+++.++....+.......+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 456789999999887777788888888876666666655544 444322 223468999999999999998876533221
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL-AAKT 175 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 175 (505)
...++.+..|++.++|.|- |+.+
T Consensus 197 ----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 ----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2235678899999999885 4433
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.4e-06 Score=82.60 Aligned_cols=155 Identities=19% Similarity=0.134 Sum_probs=98.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
+++.+++.+...+..+.. .....|++++.|+|++|-++.... +-....++++|+.|+|+ .+.+....++
T Consensus 122 kL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls-------~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLS-------SNRLSNFISSN 191 (505)
T ss_pred hhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccc-------cccccCCcccc
Confidence 555566555554433321 223378999999999998876633 66678899999999998 4444333322
Q ss_pred -ccCCCCcceeeccCCcccc-ccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc--ccccCC
Q 046115 409 -IEKLLHLKYLNLKGQKKIE-KLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP--AGIGEL 484 (505)
Q Consensus 409 -~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~i~~l 484 (505)
-..+++|+.|.|+.|.... ++-...-.+++|+.|.|.+|..+...-.....+..|+.|++++|+.. .++ ..++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccc
Confidence 2367889999999998433 34444456788888888877433322223344567778888877743 444 235666
Q ss_pred ccCCccceeEe
Q 046115 485 IRLRRVREFVV 495 (505)
Q Consensus 485 ~~L~~L~~~~~ 495 (505)
+.|+.|++..+
T Consensus 271 ~~L~~Lnls~t 281 (505)
T KOG3207|consen 271 PGLNQLNLSST 281 (505)
T ss_pred cchhhhhcccc
Confidence 66666665433
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=8.7e-05 Score=67.94 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||..+++ .....-..+.++++..... . ..+..+ .+.+ --+|++|
T Consensus 53 p~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~---~------------------~~~~~~----~~~~-~dlliiD 104 (235)
T PRK08084 53 REGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW---F------------------VPEVLE----GMEQ-LSLVCID 104 (235)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh---h------------------hHHHHH----Hhhh-CCEEEEe
Confidence 479999999999988 4443334456776543100 0 011111 1111 1378999
Q ss_pred CCCCCCc-cChhHHH-HhhcCC--CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 81 DVWNEDY-YKWEPFY-KCLKNS--LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 81 dv~~~~~-~~~~~~~-~~~~~~--~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
|++.... ..|+... ..+... ..+.++|+||+.+ ++...+....++++.+++.++-.+++.+.+...+
T Consensus 105 di~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~ 184 (235)
T PRK08084 105 NIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG 184 (235)
T ss_pred ChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC
Confidence 9965321 2333222 222221 1224799999763 3333445557999999999999999877554322
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
. .-.++++..|++.+.|..-.+..+-..+
T Consensus 185 ~----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 185 F----ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred C----CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1 1235677888888887776555544443
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=6.3e-06 Score=57.78 Aligned_cols=57 Identities=30% Similarity=0.543 Sum_probs=38.9
Q ss_pred ccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCc
Q 046115 384 CLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQ 448 (505)
Q Consensus 384 ~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 448 (505)
+|++|+++ ++.+..+|. .+..+++|++|++++|. +..+|+ .+..+++|+.|++++|+
T Consensus 2 ~L~~L~l~-------~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-------NNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-------SSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-------CCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56677776 555666653 45677777777777777 566654 55777777777777775
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=5.4e-05 Score=78.32 Aligned_cols=103 Identities=10% Similarity=0.087 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++.-++|||+++......+..+++.+.......++|+||.+. .+... ......+.+..++.++..+.+.......+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 455688899998877666788888887776677777777764 33221 233468899999999999999876643322
Q ss_pred CCCchHHHHHHHHHHHcCCCh-HHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLP-LAAKTIAS 178 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 178 (505)
.-.++.+..|++.++|.. -++..+-.
T Consensus 197 ---~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 197 ---AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 123567888999998865 45555433
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00015 Score=70.97 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++......+..+...+......+.+|++|.+. .+...+ .....+++.+++.++..+.+...+...+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 356699999997766555677888777766666666666553 333322 23468899999999999888776533221
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.-.++++..|++.++|.|-
T Consensus 197 ---~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 197 ---DTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred ---CCCHHHHHHHHHHcCCCHH
Confidence 1234667889999999885
No 59
>PRK08727 hypothetical protein; Validated
Probab=98.03 E-value=0.00011 Score=67.13 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=82.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||.||..+++ +..++...+++++..+. ...+. ... +.+ ...-+||+|
T Consensus 49 ~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~------~~~~~---------------~~~----~~l-~~~dlLiID 100 (233)
T PRK08727 49 PAGTGKTHLALALCA--AAEQAGRSSAYLPLQAA------AGRLR---------------DAL----EAL-EGRSLVALD 100 (233)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHh------hhhHH---------------HHH----HHH-hcCCEEEEe
Confidence 379999999999988 44444445667764321 11110 011 111 123489999
Q ss_pred CCCCCCc-cChh-HHHHhhcCC-CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 81 DVWNEDY-YKWE-PFYKCLKNS-LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 81 dv~~~~~-~~~~-~~~~~~~~~-~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
|+..... ..+. .+...+... ..+..+|+|++.. ++.........+++++++.++-.+++.+.+...+.
T Consensus 101 Di~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 101 GLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred CcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 9964321 1222 233322221 2456799999862 22223334568899999999999999986644322
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Plal 173 (505)
.-.++++..|++.+.|..-.+
T Consensus 181 ----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 181 ----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred ----CCCHHHHHHHHHhCCCCHHHH
Confidence 122466778888887665444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.2e-06 Score=53.03 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=15.8
Q ss_pred CcceeeccCCccccccchhhhcCCCCcEEecCCCc
Q 046115 414 HLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQ 448 (505)
Q Consensus 414 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 448 (505)
+|++|++++|+ ++.+|+.+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 34455555554 44444444555555555555544
No 61
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=7.7e-07 Score=83.24 Aligned_cols=136 Identities=24% Similarity=0.292 Sum_probs=96.7
Q ss_pred CCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCccee
Q 046115 340 RGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHLKYL 418 (505)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L~~L 418 (505)
...++|.++| .....+.|..|.++.. +|..|+.+.+||.|+|+ +|.+..+ |..|.++..|..|
T Consensus 57 GL~eVP~~LP------~~tveirLdqN~I~~i---P~~aF~~l~~LRrLdLS-------~N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 57 GLTEVPANLP------PETVEIRLDQNQISSI---PPGAFKTLHRLRRLDLS-------KNNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred CcccCcccCC------CcceEEEeccCCcccC---Chhhccchhhhceeccc-------ccchhhcChHhhhhhHhhhHH
Confidence 3455666655 4566777888877654 67778888888888888 5555554 6778888887777
Q ss_pred eccCCccccccch-hhhcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccccccc-cccCCccCCcccee
Q 046115 419 NLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREF 493 (505)
Q Consensus 419 ~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 493 (505)
-+-++..++.+|+ .+..|..|+.|.+.-|+ +.-++ ..++.|++|..|.+-.|. +.+++. .|..+.+++++++-
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 7666444888886 45788888888888887 55444 457888888888887776 556665 57777777777654
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00013 Score=74.60 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHH-HHhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVA-RIMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~-~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+...+.....+..+|++|.+. .+. +.......+++.+++.++..+.+.......+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 466789999998766556777888777766666777766653 222 22234568999999999999998876643322
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.-..+++..|++.++|.+.
T Consensus 196 ---~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 196 ---AADQDAIWQIAESAQGSLR 214 (702)
T ss_pred ---CCCHHHHHHHHHHcCCCHH
Confidence 2235668889999999774
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.98 E-value=1.4e-05 Score=73.13 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC--CCHHHHHHHHHHHcCCCCCCCh--h---cHHHHHHHHHHH-cCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP--FDEFRIARAIIESLTPGSAKDL--V---EFQSLMQHIEEC-VAG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~l~~~l~~~~~~~~--~---~~~~~~~~l~~~-l~~ 72 (505)
.+|+|||||++.+++.... .+|+.++|+.+... .+..++++.+...+-......+ . -.....+..... -.+
T Consensus 24 ~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G 102 (249)
T cd01128 24 PPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHG 102 (249)
T ss_pred CCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 4799999999999985322 37899999986665 7888999998333321111111 1 111222222222 247
Q ss_pred ceEEEEEeCCCC
Q 046115 73 KKFLLVLDDVWN 84 (505)
Q Consensus 73 ~r~LlvlDdv~~ 84 (505)
+++++++|++.+
T Consensus 103 ~~vll~iDei~r 114 (249)
T cd01128 103 KDVVILLDSITR 114 (249)
T ss_pred CCEEEEEECHHH
Confidence 899999999954
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=4.7e-05 Score=77.23 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++......+..+...+......+.+|+++.. ..+...+ .....+++.+++.++..+.+...+...+.
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999776655677788887776555555555543 3333222 23568999999999999999887643332
Q ss_pred CCCchHHHHHHHHHHHcCCChHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal 173 (505)
.-.++++..|++.++|.+--+
T Consensus 194 ---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 ---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 113567889999999998544
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=4.5e-06 Score=83.30 Aligned_cols=145 Identities=28% Similarity=0.397 Sum_probs=99.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCC-CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLR-GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
....+.+..+....++.... .+. +|+.|++..|.+.. +|..+..+++|+.|+++ .+.+..+|..
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~----~~~~nL~~L~l~~N~i~~----l~~~~~~l~~L~~L~l~-------~N~l~~l~~~ 181 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIG----LLKSNLKELDLSDNKIES----LPSPLRNLPNLKNLDLS-------FNDLSDLPKL 181 (394)
T ss_pred ceeEEecCCcccccCccccc----cchhhcccccccccchhh----hhhhhhccccccccccC-------Cchhhhhhhh
Confidence 45666666666666655442 342 78888888887643 43446777888888887 7777777776
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
.+.++.|+.|++++|+ +..+|..+..+.+|+++.+++|+ ....|..+.+++++..+.+.+|. ...+|..++.+++|+
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~ 258 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccccccc
Confidence 6677888888888888 77787766677778888888876 55666667777777777777776 334455566666666
Q ss_pred ccce
Q 046115 489 RVRE 492 (505)
Q Consensus 489 ~L~~ 492 (505)
.|++
T Consensus 259 ~L~~ 262 (394)
T COG4886 259 TLDL 262 (394)
T ss_pred eecc
Confidence 6554
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00024 Score=72.33 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=69.7
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|++..........++..+......+.+| +||....+... ......+++.+++.++....+.......+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 3566799999997776667778888888765555555 55544434322 233568999999999988888765432221
Q ss_pred CCCCchHHHHHHHHHHHcCCCh-HHHHHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLP-LAAKTIAS 178 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 178 (505)
.-.++++..|++.++|.+ .|+..+-.
T Consensus 197 ----~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 197 ----NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 223566788999999966 45555543
No 67
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00015 Score=66.38 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=86.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||.||+.+++ +...+-..++|++..+ +... .. .+.+.+.+-. +||+||
T Consensus 54 ~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~~d-~LiiDD 105 (234)
T PRK05642 54 DGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQYE-LVCLDD 105 (234)
T ss_pred CCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhhCC-EEEEec
Confidence 69999999999987 4443334567777532 1110 01 1222222222 688999
Q ss_pred CCCCC-ccChhH-HHHhhcCC-CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 82 VWNED-YYKWEP-FYKCLKNS-LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 82 v~~~~-~~~~~~-~~~~~~~~-~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+.... ...|+. +...+... ..|.++|+|++.. ++...+....++++.+++.++-.++++..+...+.
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~- 184 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL- 184 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 96432 123333 33333322 3466799988752 22223334468899999999999999865543221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
. -.++++..|++.+.+..-.+..+-..|
T Consensus 185 ~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 185 H---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred C---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 124677888888888776555554444
No 68
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00025 Score=68.15 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHHHhcCc----ccccCCCceEEEEe-CCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceE
Q 046115 1 MGGIGKTTLAQFAYNNG----DVERNFEKRTWVCV-SEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~ 75 (505)
+.|+|||++|+.++..- ....+.|...|... +......+ .+++.+.+.. .-..+++-
T Consensus 34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~-----------------~p~~~~~k 95 (313)
T PRK05564 34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNK-----------------KPYEGDKK 95 (313)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhc-----------------CcccCCce
Confidence 46999999999998721 11223343344331 22222212 3333333321 01124556
Q ss_pred EEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHH-HHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCc
Q 046115 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETV-ARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRE 153 (505)
Q Consensus 76 LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~-~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~ 153 (505)
++|+|+++......+..+.+.+.+...++.+|++|.+.+- .+. ......+.+.+++.++....+..... .
T Consensus 96 v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~---~----- 167 (313)
T PRK05564 96 VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN---D----- 167 (313)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc---C-----
Confidence 7778888666666788899999988888888888876532 221 12245889999999999888865431 1
Q ss_pred hHHHHHHHHHHHcCCChHHH
Q 046115 154 NLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 154 ~~~~~~~~i~~~~~g~Plal 173 (505)
..++.+..++..++|.|.-.
T Consensus 168 ~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 168 IKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 11344678899999988643
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00014 Score=74.29 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEE-EeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILI-TTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLi-Ttr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.++.-++|+|+++......+..+++.+.....++.+|+ ||....+...+ .....+.+..++.++..+.+.......+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 34667999999988776677888888877655555554 55444443322 22458899999999999988876533222
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
....+.+..|++.++|.|. ++..+-.
T Consensus 202 ----~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 202 ----AHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1224567889999999985 3433333
No 70
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00039 Score=69.76 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++.-++|+|++..........+.+.+.+....+.+|++| ....+...+ .....+++.+++.++..+.+...+...+.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi- 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI- 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-
Confidence 456689999997766656778888888766666665555 434444332 33568899999999999999887643332
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.-.++++..|++.++|.+-
T Consensus 194 ---~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 194 ---EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred ---CCCHHHHHHHHHHcCCCHH
Confidence 1235668889999999875
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=7.3e-05 Score=75.55 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|+++......+..+...+......+.+| +||+...+...+ .....+++.+++.++....+...+...+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567789999998766667788888887766666655 455555554433 23457899999999999999877643332
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.-.++++..|++.++|.+-
T Consensus 206 ----~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 206 ----KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred ----CCCHHHHHHHHHHcCCCHH
Confidence 1234667889999999774
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=8.3e-06 Score=77.53 Aligned_cols=114 Identities=24% Similarity=0.317 Sum_probs=82.0
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc--h
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP--E 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp--~ 431 (505)
.+++|..|.+++|.++|. .+......+++|.+|+|+ .|+.+........-++.|+.|+|++|.++. ++ .
T Consensus 195 ~l~~lK~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~------~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~ 265 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWK--DVQWILLTFPSLEVLYLE------ANEIILIKATSTKILQTLQELDLSNNNLID-FDQGY 265 (505)
T ss_pred hhhhhheEEeccCCCCHH--HHHHHHHhCCcHHHhhhh------cccccceecchhhhhhHHhhccccCCcccc-ccccc
Confidence 567899999999998864 366677888999999998 233333333334567889999999998443 33 3
Q ss_pred hhhcCCCCcEEecCCCcCccc--cchh-----ccccccCceeecCCCccccccc
Q 046115 432 TLCELYNLERLNVDDCQNLRE--LPRG-----IGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~--lp~~-----~~~l~~L~~L~l~~~~~~~~~p 478 (505)
.++.++.|+.|+++.|. +.+ +|+. ...+++|+.|++..|+ +..++
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~ 317 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWR 317 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc-ccccc
Confidence 47888999999999888 443 3443 4667889999999987 44454
No 73
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.1e-05 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=33.2
Q ss_pred CCCcEEecCCCcCccccchhccccccCceeecCCCccccccc
Q 046115 437 YNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 478 (505)
++|++|++++|. +..+|+.+++|++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 479999999998 88999989999999999999997 44443
No 74
>PF14516 AAA_35: AAA-like domain
Probab=97.83 E-value=0.0017 Score=62.81 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceEEEEeCCC-----CCHHHHHHHH----HHHcCCCCCC------ChhcHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEP-----FDEFRIARAI----IESLTPGSAK------DLVEFQSLMQH 65 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~-----~~~~~~~~~l----~~~l~~~~~~------~~~~~~~~~~~ 65 (505)
-.+|||+|..++.+ .... .| .++++++... .+....++.+ .++++..... ...........
T Consensus 40 Rq~GKTSll~~l~~--~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~ 116 (331)
T PF14516_consen 40 RQMGKTSLLLRLLE--RLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEY 116 (331)
T ss_pred ccCCHHHHHHHHHH--HHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHH
Confidence 36899999999887 4433 34 4447876652 2344444444 4454432210 01111122233
Q ss_pred HHHHc---CCceEEEEEeCCCCCCc-c-----ChhHHHHhhcCCC----CCcE--EEEEeCchHHHHH-----hCCcceE
Q 046115 66 IEECV---AGKKFLLVLDDVWNEDY-Y-----KWEPFYKCLKNSL----HESK--ILITTRKETVARI-----MGSTHVI 125 (505)
Q Consensus 66 l~~~l---~~~r~LlvlDdv~~~~~-~-----~~~~~~~~~~~~~----~~~~--iLiTtr~~~~~~~-----~~~~~~~ 125 (505)
+.+.+ .+++.+|++|+++..-. . -+..+........ ...- |++.+........ ......+
T Consensus 117 ~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i 196 (331)
T PF14516_consen 117 FEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPI 196 (331)
T ss_pred HHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccce
Confidence 33322 25899999999954221 1 1122222222111 1112 2333222111111 1224478
Q ss_pred eCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 046115 126 SVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSK 183 (505)
Q Consensus 126 ~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 183 (505)
.+++|+.+|...|...+... . ....+.+|...++|||..+..++..+...
T Consensus 197 ~L~~Ft~~ev~~L~~~~~~~-----~---~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 197 ELPDFTPEEVQELAQRYGLE-----F---SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred eCCCCCHHHHHHHHHhhhcc-----C---CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 89999999999999876421 1 12338899999999999999999999765
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00035 Score=72.22 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+++.+......+++|++|.+ ..+... ......+.+..++.++....+.......+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999766554566677777765555666666654 322211 223346788899999999999876643332
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
.-.++.+..|++.++|.+. ++..+-.
T Consensus 197 ---~id~eAL~~Ia~~A~GslRdAlnLLDq 223 (709)
T PRK08691 197 ---AYEPPALQLLGRAAAGSMRDALSLLDQ 223 (709)
T ss_pred ---CcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1235678899999999884 4444433
No 76
>PRK09087 hypothetical protein; Validated
Probab=97.78 E-value=0.00042 Score=62.84 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCccChhHHHHhhcCC-CCCcEEEEEeCc---------hHHHHHhCCcceEeCCCCChhhHHHHHHHhhhC
Q 046115 76 LLVLDDVWNEDYYKWEPFYKCLKNS-LHESKILITTRK---------ETVARIMGSTHVISVNVLSEMECWSVFQSLAIS 145 (505)
Q Consensus 76 LlvlDdv~~~~~~~~~~~~~~~~~~-~~~~~iLiTtr~---------~~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 145 (505)
+|++||+..... .-+.+...+... ..|..+|+|++. +++...+....++++++++.++-.+++++.+..
T Consensus 90 ~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 90 PVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred eEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 788899954321 122333333322 236789999874 344445556679999999999999999887744
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 146 GKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.+. . -.++++..|++.+.|..-++..+-..+
T Consensus 169 ~~~-~---l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 169 RQL-Y---VDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred cCC-C---CCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 322 1 225677888888888777666544433
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00041 Score=71.89 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=69.7
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|+++.........+++.+......+++|.+|.+ ..+... ......+.+.+++.++....+.......+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999887776788888888876666555554444 444322 223568899999999999988776532221
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL-AAKTI 176 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 176 (505)
...++.+..|++.++|.+- |+..+
T Consensus 197 ----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 197 ----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1234667889999999875 44443
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.78 E-value=0.00031 Score=64.15 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ +....=..+++++...... .+ ... ...-+||+|
T Consensus 50 ~~G~GKT~La~ai~~--~~~~~~~~~~~i~~~~~~~----------~~-------------------~~~-~~~~~liiD 97 (227)
T PRK08903 50 EAGSGRSHLLQALVA--DASYGGRNARYLDAASPLL----------AF-------------------DFD-PEAELYAVD 97 (227)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCcEEEEehHHhHH----------HH-------------------hhc-ccCCEEEEe
Confidence 379999999999998 3322222445666443110 00 011 123478899
Q ss_pred CCCCCCccChhHHHHhhcCC-CCCc-EEEEEeCchHH--------HHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 81 DVWNEDYYKWEPFYKCLKNS-LHES-KILITTRKETV--------ARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~-~~~~-~iLiTtr~~~~--------~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
|+..........+...+... ..+. .+++|++.... ...+.....+.+++++.++-..++...+-..+.
T Consensus 98 di~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-- 175 (227)
T PRK08903 98 DVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL-- 175 (227)
T ss_pred ChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 99654433334444444332 1233 46666664321 112223368899999998877777654322221
Q ss_pred CCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 151 KRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.-.++++..+++.+.|.+..+..+-..+
T Consensus 176 --~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 176 --QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred --CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1234678888889999998877776665
No 79
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0057 Score=59.55 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=140.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC-c-eEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC--CceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE-K-RTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA--GKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~L 76 (505)
.+|+|||+.++.+++ ++..... . +++|++....+...++..|+++++ ..........+....+.+.+. ++.++
T Consensus 50 ~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~I 126 (366)
T COG1474 50 PTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVI 126 (366)
T ss_pred CCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEE
Confidence 379999999999998 5555432 2 689999999999999999999998 444445566667777777774 47899
Q ss_pred EEEeCCCCCCccChhHHHHhhcCCCC-CcE--EEEEeCchHHHHHh----C---CcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 77 LVLDDVWNEDYYKWEPFYKCLKNSLH-ESK--ILITTRKETVARIM----G---STHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 77 lvlDdv~~~~~~~~~~~~~~~~~~~~-~~~--iLiTtr~~~~~~~~----~---~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+|||+++.-....-+.+...+..... .++ ++..+.+-...... . ....+..++-+.+|-.+++...+...
T Consensus 127 vvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 127 VILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred EEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 99999955322111222222222222 233 34444443322211 1 12347788888999888887766321
Q ss_pred -CCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHH--HhccCC-----CHHHHHHHHhhhhhhhhhcccCchhhHhhcccc
Q 046115 147 -KTIGKRENLEKIGREIVKKCKG-LPLAAKTIAS--LLRSKN-----TEKEWQNILENEIWELEAIEKGLLAPLLLSYNE 217 (505)
Q Consensus 147 -~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~--~l~~~~-----~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~ 217 (505)
.....++..-+.+..++..-+| -=.|+..+.. .+++.. +...-....+ ..-...+.-.+..
T Consensus 207 ~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~----------~~~~~~~~~~~~~ 276 (366)
T COG1474 207 FSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQE----------EIERDVLEEVLKT 276 (366)
T ss_pred ccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH----------HhhHHHHHHHHHc
Confidence 1112223333334444444443 3344433332 222210 1111111100 0111223344677
Q ss_pred CChhhhhhhhhhccCCCCCCCChHHHHHHH--HHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccC
Q 046115 218 LPSKVKRCFSYCAVFPKDYGIRKHKLIELW--MAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKY 284 (505)
Q Consensus 218 L~~~~~~~ll~la~f~~~~~i~~~~l~~~w--~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~ 284 (505)
|+.+++..++.++... ..+....+-... +...+-. ......+++.+|...|++.....+
T Consensus 277 L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~------~~~~~~~ii~~L~~lgiv~~~~~~ 337 (366)
T COG1474 277 LPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT------SQRRFSDIISELEGLGIVSASLIS 337 (366)
T ss_pred CCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc------hHHHHHHHHHHHHhcCeEEeeecc
Confidence 7777776665555443 233333322221 1111111 334566778888888888754443
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0011 Score=66.78 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.-.......+...+......+.++++|.+ ..+...+ .....+.+.+++.++....+...+...+.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 46679999999665544556677776665444554444433 3333322 33568899999999999988876643222
Q ss_pred CCCchHHHHHHHHHHHcCC-ChHHHHHHHHHhcc---CCCHHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKG-LPLAAKTIASLLRS---KNTEKEWQNIL 193 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l~~---~~~~~~~~~~l 193 (505)
.-.++++..|++.++| .+.++..+-..... .-+.+.....+
T Consensus 195 ---~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 195 ---EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred ---CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1224667888887865 46677766554322 12444444444
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00054 Score=67.30 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+.+.+.....++.+|++|.+. .+...+ .....+.+.+++.++..+.+.....
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 455588889998876656677888777766667666666663 333222 2346889999999999988874321
Q ss_pred CCCchHHHHHHHHHHHcCCChHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
- .++.+..++..++|.|..
T Consensus 191 -~---~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 191 -V---DPETARRAARASQGHIGR 209 (394)
T ss_pred -C---CHHHHHHHHHHcCCCHHH
Confidence 1 135577899999999953
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0005 Score=70.04 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++.-++|+|+++.........+.+.+......+++|++|.+ ..+...+ .....+++.+++.++....+.......+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668899999877666777788887776566666655544 3333221 22457889999999988877666533222
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKTI 176 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 176 (505)
.-.++.+..|++.++|.+. |+..+
T Consensus 197 ---~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 197 ---EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred ---CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1234567889999999884 43334
No 83
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.74 E-value=0.00014 Score=61.13 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+++++ .....-..+++++..+..........+... ............++.+||+|
T Consensus 27 ~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~lilD 91 (151)
T cd00009 27 PPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF-------------LVRLLFELAEKAKPGVLFID 91 (151)
T ss_pred CCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh-------------hHhHHHHhhccCCCeEEEEe
Confidence 479999999999998 443333456677665533322211111100 01111122334567899999
Q ss_pred CCCCCCccChhHHHHhhcCC------CCCcEEEEEeCchH
Q 046115 81 DVWNEDYYKWEPFYKCLKNS------LHESKILITTRKET 114 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~------~~~~~iLiTtr~~~ 114 (505)
|++.........+...+... ..++.+++||....
T Consensus 92 e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 92 EIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 99754222223333333332 36788888888653
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.74 E-value=0.00088 Score=65.29 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=62.7
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
.+-+||+||+..........+...+......+++++|+..+ .+.... .....+.+.+++.++...++...+...+..
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 34589999996554333445555555555557777777543 222222 224578889999999999998765432221
Q ss_pred CCchHHHHHHHHHHHcCCChHHHHH
Q 046115 151 KRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
-.++++..+++.++|.+-.+..
T Consensus 204 ---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 ---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2356788899999887755443
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=5.4e-05 Score=72.55 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCChhcHH-----HHHHHHHHH-cCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF--DEFRIARAIIESLTPGSAKDLVEFQ-----SLMQHIEEC-VAG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~l~~~-l~~ 72 (505)
++|+||||||+++++... .++|+..+||.+.+.. +..++++.+...+-....+...... ...+.-... ..+
T Consensus 177 ppGvGKTTLaK~Ian~I~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G 255 (416)
T PRK09376 177 PPKAGKTVLLQNIANSIT-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHG 255 (416)
T ss_pred CCCCChhHHHHHHHHHHH-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999998422 2379999999888776 7777777776433222222221111 111111121 257
Q ss_pred ceEEEEEeCCCC
Q 046115 73 KKFLLVLDDVWN 84 (505)
Q Consensus 73 ~r~LlvlDdv~~ 84 (505)
++++|++|++..
T Consensus 256 ~dVlL~iDsItR 267 (416)
T PRK09376 256 KDVVILLDSITR 267 (416)
T ss_pred CCEEEEEEChHH
Confidence 899999999944
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00013 Score=72.45 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.++.-++|+|+++......+..++..+......+.+| .||....+...+ .....|.+.+++.++..+.+.......+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 4566799999998877667888888887655555544 444434443222 23457999999999998888776543222
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.-.++++..|++.++|.+.
T Consensus 199 ----~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 199 ----QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ----CCCHHHHHHHHHHcCChHH
Confidence 1235678899999999983
No 87
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.72 E-value=0.00033 Score=63.24 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=88.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCC--ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFE--KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.|+|||.|..++++ +..+... .+++++.. +....+...+.. ... ..+...+. .-=+|++
T Consensus 43 ~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~------~~~----~~~~~~~~-~~DlL~i 103 (219)
T PF00308_consen 43 SGLGKTHLLQAIAN--EAQKQHPGKRVVYLSAE------EFIREFADALRD------GEI----EEFKDRLR-SADLLII 103 (219)
T ss_dssp TTSSHHHHHHHHHH--HHHHHCTTS-EEEEEHH------HHHHHHHHHHHT------TSH----HHHHHHHC-TSSEEEE
T ss_pred CCCCHHHHHHHHHH--HHHhccccccceeecHH------HHHHHHHHHHHc------ccc----hhhhhhhh-cCCEEEE
Confidence 69999999999998 5554432 35566633 444455554441 111 22333333 2348899
Q ss_pred eCCCCCCcc-Ch-hHHHHhhcCC-CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 80 DDVWNEDYY-KW-EPFYKCLKNS-LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 80 Ddv~~~~~~-~~-~~~~~~~~~~-~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
||++.-... .| +.+...+... ..|.++|+|++.. ++...+.+...+++.+.+.++-.+++.+.+...+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 999653321 12 2233323222 3466899999652 2334445566899999999999999998875433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.. -.++++.-|++.+.+..-.|..+-..+
T Consensus 184 ~~----l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 184 IE----LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp ------S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CC----CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 32 235677788888877766655554433
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0008 Score=69.60 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=67.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++.-++|+|+++......+..+++.+......+.+|++| ....+.. .......+.+..++.++..+.+.......+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi- 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV- 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 345688999998877667777888877765565555554 4333332 2233568999999999999999876543322
Q ss_pred CCCchHHHHHHHHHHHcCCChHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal 173 (505)
.-.++.+..|++.++|.+-.+
T Consensus 202 ---~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 202 ---PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 123466888999999977443
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00064 Score=68.29 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=95.8
Q ss_pred CCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.|+|||.|++.+++ .+.... ..+++++. .++...+...+.... .....+.+.+++ .-+||+
T Consensus 150 ~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~--------~~~~~~~~~~~~-~dvLiI 212 (450)
T PRK14087 150 SGMGKTHLLKAAKN--YIESNFSDLKVSYMSG------DEFARKAVDILQKTH--------KEIEQFKNEICQ-NDVLII 212 (450)
T ss_pred CCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------hHHHHHHHHhcc-CCEEEE
Confidence 69999999999988 544322 23345543 355666666554110 122333444433 347889
Q ss_pred eCCCCCCc--cChhHHHHhhcCC-CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 80 DDVWNEDY--YKWEPFYKCLKNS-LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 80 Ddv~~~~~--~~~~~~~~~~~~~-~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
||++.... ...+.+...+... ..+..|++|+... .+...+....++.+.+++.++-.+++.+.+...+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 99965431 1122333333321 3445788887642 1222334455888999999999999988774322
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
. ...-.++++..|++.+.|.|-.+..+...+
T Consensus 293 l--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 293 I--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred C--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 1 012335788999999999998877776544
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=5.9e-05 Score=73.04 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=65.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
+..++.+.......+| .+ ..+|++|.+.++..- ..+|..+. .+|+.|.++ .+..+..+|+.
T Consensus 53 ~l~~L~Is~c~L~sLP-~L------P~sLtsL~Lsnc~nL---tsLP~~LP--~nLe~L~Ls------~Cs~L~sLP~s- 113 (426)
T PRK15386 53 ASGRLYIKDCDIESLP-VL------PNELTEITIENCNNL---TTLPGSIP--EGLEKLTVC------HCPEISGLPES- 113 (426)
T ss_pred CCCEEEeCCCCCcccC-CC------CCCCcEEEccCCCCc---ccCCchhh--hhhhheEcc------Ccccccccccc-
Confidence 5567777766666555 22 246888888774321 11343332 468888887 23355566653
Q ss_pred cCCCCcceeeccCCc--cccccchhhhcC------------------CCCcEEecCCCcCccccchhccccccCceeecC
Q 046115 410 EKLLHLKYLNLKGQK--KIEKLPETLCEL------------------YNLERLNVDDCQNLRELPRGIGKLRKLMYLHNE 469 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~--~~~~lp~~~~~l------------------~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 469 (505)
|+.|++.++. .+..+|+++..| .+|++|++++|. ...+|..+. .+|++|.++
T Consensus 114 -----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~-~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS-NIILPEKLP--ESLQSITLH 185 (426)
T ss_pred -----cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC-cccCccccc--ccCcEEEec
Confidence 4445555433 256677655443 257778888777 334554433 367777776
Q ss_pred CC
Q 046115 470 DT 471 (505)
Q Consensus 470 ~~ 471 (505)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0012 Score=64.23 Aligned_cols=97 Identities=9% Similarity=0.094 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++..+......+.+.+.....++.+|++|.+.. +...+ .....+.+.+++.++..+++.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~----- 214 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP----- 214 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-----
Confidence 4567899999988877777888888887766677777776643 32222 3356899999999999999977531
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
... .+.+..++..++|.|.....+
T Consensus 215 -~~~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 215 -DLP--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -cCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 111 122367899999999754333
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=97.65 E-value=0.0007 Score=65.21 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++.-++|+|+++.........+...+......+++++++... .+...+ .....+++.+++.++....+...+...+..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 346799999997765544555666565555566676666442 222211 123478999999999999888776433321
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
-.++.+..|++.++|..-
T Consensus 178 ----i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 178 ----YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred ----CCHHHHHHHHHHcCCCHH
Confidence 124567889999988763
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0016 Score=63.16 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+++.+......+.+|++|.. ..+...+ .....+.+.+++.++..+++......
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---- 215 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---- 215 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----
Confidence 45678999999887766677788888766555554444443 3332222 23458999999999999999874311
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAK 174 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~ 174 (505)
.. -.++.+..+++.++|.|....
T Consensus 216 -~~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 216 -QG-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred -cC-CCHHHHHHHHHHcCCCHHHHH
Confidence 11 123457789999999997543
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.61 E-value=0.0022 Score=62.99 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+...+......+.+|++|.+.. +...+ .....++..+++.++..+++...+...+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 3556888999866554456677777766556666666665543 33222 23457888999999998888876533221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 177 (505)
.-.++++..+++.++|.|..+....
T Consensus 195 ---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 ---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 1124678889999999886554443
No 95
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0014 Score=62.85 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCCC
Q 046115 74 KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIGK 151 (505)
Q Consensus 74 r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~ 151 (505)
+-++|+|+++.........+.+.+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+..... .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~---~--- 180 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP---E--- 180 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc---c---
Confidence 33446799988777778888888888767777777777643 3322 23355789999999999998876420 1
Q ss_pred CchHHHHHHHHHHHcCCChHHH
Q 046115 152 RENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 152 ~~~~~~~~~~i~~~~~g~Plal 173 (505)
...+.+..++..++|.|...
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRA 200 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHH
Confidence 11233567788999999643
No 96
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=7.1e-05 Score=72.53 Aligned_cols=85 Identities=20% Similarity=0.333 Sum_probs=57.0
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+.+++.|.+++|.+..+ |. -..+|+.|.+. ++..+..+|..+ ..+|++|++++|..+..+|.+
T Consensus 50 ~~~~l~~L~Is~c~L~sL----P~---LP~sLtsL~Ls------nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s- 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESL----PV---LPNELTEITIE------NCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES- 113 (426)
T ss_pred HhcCCCEEEeCCCCCccc----CC---CCCCCcEEEcc------CCCCcccCCchh--hhhhhheEccCcccccccccc-
Confidence 568899999998876543 32 12368889887 456667777644 468999999998667777764
Q ss_pred hcCCCCcEEecCCC--cCccccchhccc
Q 046115 434 CELYNLERLNVDDC--QNLRELPRGIGK 459 (505)
Q Consensus 434 ~~l~~L~~L~l~~~--~~~~~lp~~~~~ 459 (505)
|+.|+++++ ..+..+|+++..
T Consensus 114 -----Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred -----cceEEeCCCCCcccccCcchHhh
Confidence 455555543 335667765443
No 97
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=1.3e-05 Score=64.01 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhh
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLC 434 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 434 (505)
...|....+++|.+..+ ++.+-..++..+.|+|+ ++.+...|..+..++.|+.|+++.|+ +...|.-+.
T Consensus 52 ~~el~~i~ls~N~fk~f---p~kft~kf~t~t~lNl~-------~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKF---PKKFTIKFPTATTLNLA-------NNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhC---CHHHhhccchhhhhhcc-------hhhhhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 33444444555443322 33333333444445554 44444444444445555555555444 444444444
Q ss_pred cCCCCcEEecCCCcCccccc
Q 046115 435 ELYNLERLNVDDCQNLRELP 454 (505)
Q Consensus 435 ~l~~L~~L~l~~~~~~~~lp 454 (505)
+|.+|-.|+..+|. ...+|
T Consensus 121 ~L~~l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAEID 139 (177)
T ss_pred HHHhHHHhcCCCCc-cccCc
Confidence 44444444444444 33343
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0009 Score=68.64 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|+++.........+.+.+......+.+|.+|.+ +.+... ......+++..++.++....+.......+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 346679999999776655567788888776555555554443 333211 122458889999999999888766532221
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
...++.+..|++.++|.+- |+..+-.
T Consensus 197 ----~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 197 ----PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1234667889999999774 4444443
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.55 E-value=0.0014 Score=61.32 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+||||||+-++.. -+.+ ...||..+.......-++.++++-. -...+.++|.+|.+|
T Consensus 170 ppG~GKTtlArlia~t--sk~~--SyrfvelSAt~a~t~dvR~ife~aq----------------~~~~l~krkTilFiD 229 (554)
T KOG2028|consen 170 PPGTGKTTLARLIAST--SKKH--SYRFVELSATNAKTNDVRDIFEQAQ----------------NEKSLTKRKTILFID 229 (554)
T ss_pred CCCCchHHHHHHHHhh--cCCC--ceEEEEEeccccchHHHHHHHHHHH----------------HHHhhhcceeEEEeH
Confidence 4899999999999984 2222 1456776665444444455444332 122456789999999
Q ss_pred CCCCCCccChhHHHHhhcCCCCCcEEEE--EeCchHH---HHHhCCcceEeCCCCChhhHHHHHHHhhh---C-CCCCC-
Q 046115 81 DVWNEDYYKWEPFYKCLKNSLHESKILI--TTRKETV---ARIMGSTHVISVNVLSEMECWSVFQSLAI---S-GKTIG- 150 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~~~~~iLi--Ttr~~~~---~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~---~-~~~~~- 150 (505)
.|.+....+-+.++ |--.+|.-++| ||.++.. ...+..-.++.++.|+.++-..++.+..- . .+.+.
T Consensus 230 EiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~ 306 (554)
T KOG2028|consen 230 EIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDP 306 (554)
T ss_pred Hhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCC
Confidence 99775443333333 22235665665 7777532 22233456889999999999888876321 1 11111
Q ss_pred -CC---chHHHHHHHHHHHcCCCh
Q 046115 151 -KR---ENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 151 -~~---~~~~~~~~~i~~~~~g~P 170 (505)
+. .-...++..++..|+|-.
T Consensus 307 l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 307 LPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred CCCcchhhhHHHHHHHHHhcCchH
Confidence 11 134566777788888865
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0014 Score=65.15 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++.......+..+...+.+..+.+.+|++| +...+.+.+ .....+++.+++.++....+....-..+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999997766556778888887766666665555 434443322 12347889999999998888776532221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal 173 (505)
.-.++.+..+++.++|.+--+
T Consensus 205 ---~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 205 ---SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 123567889999999977533
No 101
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.54 E-value=0.00068 Score=59.95 Aligned_cols=138 Identities=21% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+||||||.-+++ +....|. +.+. ...+...-+..++.. ++ ++-+|.+|
T Consensus 58 PPG~GKTTLA~IIA~--e~~~~~~---~~sg-~~i~k~~dl~~il~~----------------------l~-~~~ILFID 108 (233)
T PF05496_consen 58 PPGLGKTTLARIIAN--ELGVNFK---ITSG-PAIEKAGDLAAILTN----------------------LK-EGDILFID 108 (233)
T ss_dssp STTSSHHHHHHHHHH--HCT--EE---EEEC-CC--SCHHHHHHHHT-------------------------TT-EEEEC
T ss_pred CCccchhHHHHHHHh--ccCCCeE---eccc-hhhhhHHHHHHHHHh----------------------cC-CCcEEEEe
Confidence 589999999999999 5655542 2221 111111111222222 22 33466678
Q ss_pred CCCCCCccChhHHHHhhcCCC-------------------CCcEEEEEeCchHHHHHhCC-cce-EeCCCCChhhHHHHH
Q 046115 81 DVWNEDYYKWEPFYKCLKNSL-------------------HESKILITTRKETVARIMGS-THV-ISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~-------------------~~~~iLiTtr~~~~~~~~~~-~~~-~~l~~l~~~ea~~Lf 139 (505)
.+..-...+-+.+...+.++. +-+-|=.|||.-.+...... ..+ ..++..+.+|-.++.
T Consensus 109 EIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv 188 (233)
T PF05496_consen 109 EIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIV 188 (233)
T ss_dssp TCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHH
T ss_pred chhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHH
Confidence 886655444444444444321 12234458887554433322 333 468999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCChH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.+.+..-+ -+-.++.+.+|++.+.|-|-
T Consensus 189 ~r~a~~l~----i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 189 KRSARILN----IEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp HHCCHCTT-----EE-HHHHHHHHHCTTTSHH
T ss_pred HHHHHHhC----CCcCHHHHHHHHHhcCCChH
Confidence 87664322 23346789999999999995
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0024 Score=65.79 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|+++.........++..+........+|++|.+ ..+... ......+++..++.++....+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 345679999999776655677788877765445555554444 444322 223457889999999999888776543221
Q ss_pred CCCCchHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 046115 149 IGKRENLEKIGREIVKKCKGLP-LAAKTIASLL 180 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 180 (505)
.-..+.+..|++.++|.+ .|+..+...+
T Consensus 197 ----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 ----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 123467888999999965 6777776544
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0025 Score=66.02 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=67.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+.+.+......+.+|++| ....+...+ .....+++..++.++....+...+...+.
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi- 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV- 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 355678999997766556777888877766666665544 434433222 23458899999999999999876643322
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.-.++.+..|++.++|.+..+..
T Consensus 210 ---~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 210 ---EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12246788899999999865443
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0023 Score=65.60 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
++-++|+|+++......+..+...+......+.+|++| ....+... ......+++.+++.++....+...+...+.
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-- 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-- 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--
Confidence 34469999997766556677888777665555555444 43344322 233558899999999999888876533221
Q ss_pred CCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 151 KRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
.-.++++..+++.++|.+- |+..+-.
T Consensus 197 --~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 197 --KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred --CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1124567889999999664 4444443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0022 Score=68.92 Aligned_cols=104 Identities=8% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.++.-++|||+++.........+++.+.+....+.+|++| ....+...+ .....|++..++.++..+++.......+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 3456678899998877777788888888776666655555 444444332 33568899999999988888775432222
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
.-.++.+..|++.++|.+. ++..+-+
T Consensus 198 ----~id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 198 ----PVEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1234567789999999884 3333333
No 106
>PRK06620 hypothetical protein; Validated
Probab=97.50 E-value=0.0026 Score=57.18 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=57.4
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
-++++||++......+-.+...+.. .|..+|+|++.+ ++...+....++++++++.++-..++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999964321122222222223 456899998752 2333344455899999999998888877654222
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
. . -.++++..|++.+.|.--.+.-+
T Consensus 165 l-~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 V-T---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred C-C---CCHHHHHHHHHHccCCHHHHHHH
Confidence 1 1 22466777888777665444433
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.45 E-value=0.0014 Score=69.42 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEE--eCchH--HHHH-hCCcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILIT--TRKET--VARI-MGSTHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiT--tr~~~--~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+++.+|++|+++.-.....+.+...+. .+..++|+ |.++. +... ......+.+++++.++...++.+.....
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 457799999997655434445554333 34555553 44432 2111 1224578999999999999998765310
Q ss_pred CC---CCCCchHHHHHHHHHHHcCCChH
Q 046115 147 KT---IGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 147 ~~---~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.. .....-.++++..|++.+.|..-
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 00 01112235677888888888653
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0055 Score=63.23 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=70.2
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........++..+......+.+| +||....+...+ .....++...++.++..+.+.......+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 455688999998777667778888888765555555 455444444332 33568999999999998888776543322
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHHHHHHh
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKTIASLL 180 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l 180 (505)
.-.++.+..|++.++|.+- ++..+-..+
T Consensus 196 ---~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 196 ---VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1124567888999999774 555554433
No 109
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.43 E-value=0.00032 Score=67.72 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCCcHHHHHHHHhcCccccc-CCCceEEEEeCCC--CCHHHHHHHHHHHcCCCCCCChhcH-----HHHHHHHHHH-cC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEP--FDEFRIARAIIESLTPGSAKDLVEF-----QSLMQHIEEC-VA 71 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~l~~~-l~ 71 (505)
.+|+|||||++.+++ .+.. +|+..+|+.+.+. .+..++++.+...+-.......... ....+..... -.
T Consensus 176 ~~g~GKTtL~~~i~~--~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~ 253 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQ--AITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 253 (415)
T ss_pred CCCCChhHHHHHHHH--hhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHc
Confidence 479999999999998 4433 5998899987755 6888999988654432222221111 1112222222 25
Q ss_pred CceEEEEEeCCCC
Q 046115 72 GKKFLLVLDDVWN 84 (505)
Q Consensus 72 ~~r~LlvlDdv~~ 84 (505)
+++++|++|.+..
T Consensus 254 GkdVVLlIDEitR 266 (415)
T TIGR00767 254 KKDVVILLDSITR 266 (415)
T ss_pred CCCeEEEEEChhH
Confidence 7899999999955
No 110
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.42 E-value=0.0053 Score=59.26 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=61.8
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
.+-++++|+++.-.......+...+......+.+++++..+ .+... ......+.+.+++.++....+...+...+.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-- 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-- 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC--
Confidence 35689999986554334455666666555556777766432 22111 122447899999999999988877643322
Q ss_pred CCchHHHHHHHHHHHcCCChHH
Q 046115 151 KRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Pla 172 (505)
.-.++++..+++.++|.+.-
T Consensus 180 --~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 180 --EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred --CCCHHHHHHHHHHcCCCHHH
Confidence 12256788899999998765
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0042 Score=64.91 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.......+.+...+......+.+|+++.+ ..+...+ .....+.+..++..+....+...+...+..
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999766555677788777776566666665544 3333322 234578899999999988887765432221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 177 (505)
-.++.+..+++.++|.+..+...-
T Consensus 199 ----i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 199 ----LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 224678899999999886544433
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=97.40 E-value=0.0046 Score=63.15 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=86.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+||||+|+.+++ +.. |+ ++-++.+..... .....++....... .....++-+||+|
T Consensus 47 ppG~GKTtla~ala~--el~--~~-~ielnasd~r~~-~~i~~~i~~~~~~~---------------sl~~~~~kvIiID 105 (482)
T PRK04195 47 PPGVGKTSLAHALAN--DYG--WE-VIELNASDQRTA-DVIERVAGEAATSG---------------SLFGARRKLILLD 105 (482)
T ss_pred CCCCCHHHHHHHHHH--HcC--CC-EEEEcccccccH-HHHHHHHHHhhccC---------------cccCCCCeEEEEe
Confidence 489999999999998 432 22 233444433222 22222222221000 0111357799999
Q ss_pred CCCCCCc----cChhHHHHhhcCCCCCcEEEEEeCchH-HHH-Hh-CCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCc
Q 046115 81 DVWNEDY----YKWEPFYKCLKNSLHESKILITTRKET-VAR-IM-GSTHVISVNVLSEMECWSVFQSLAISGKTIGKRE 153 (505)
Q Consensus 81 dv~~~~~----~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~-~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~ 153 (505)
+++.... ..+..+...+.. .++.||+|+.+.. ... .. .....+.+.+++..+....+.......+..
T Consensus 106 EaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---- 179 (482)
T PRK04195 106 EVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---- 179 (482)
T ss_pred cCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC----
Confidence 9966432 234556555553 2345666665432 111 11 234578899999999988887766433321
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 154 NLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 154 ~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
-.++++..|++.++|..-.+......+
T Consensus 180 i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 180 CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 125678899999998775554433333
No 113
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.38 E-value=2.1e-05 Score=73.90 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=85.2
Q ss_pred ccceEEecccccCCccccccccCcc-ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchh-ccccc
Q 046115 384 CLRALELQVRESWPRNNLIKEIPTN-IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRG-IGKLR 461 (505)
Q Consensus 384 ~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~ 461 (505)
.-..++|. .|.+..+|+. |+.+++|+.|||+.|....--|..+..+..|.+|-+.++..++.+|.. ++.|.
T Consensus 68 ~tveirLd-------qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLD-------QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEec-------cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 56778888 8889998764 789999999999999933344788999999988888775559999975 89999
Q ss_pred cCceeecCCCcccccccccccCCccCCcccee
Q 046115 462 KLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 462 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
+|+.|.+.-|.........|.+|++|..|.+|
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLY 172 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhccc
Confidence 99999999998555555668999999888887
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.36 E-value=0.0042 Score=57.65 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCC-ceEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERN----FEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAG-KKFL 76 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~L 76 (505)
+|+|||++++++.+.+-.... --.|+.|..-..++...+...|+.+++.+.... ....+........++. +--+
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-~~~~~~~~~~~~llr~~~vrm 148 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-DRVAKLEQQVLRLLRRLGVRM 148 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC-CCHHHHHHHHHHHHHHcCCcE
Confidence 689999999999874211111 114666777788899999999999999665332 2333333333333322 3348
Q ss_pred EEEeCCCCC------CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH-----hCCcceEeCCCCChhhH-HHHHHHhh-
Q 046115 77 LVLDDVWNE------DYYKWEPFYKCLKNSLHESKILITTRKETVARI-----MGSTHVISVNVLSEMEC-WSVFQSLA- 143 (505)
Q Consensus 77 lvlDdv~~~------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~-----~~~~~~~~l~~l~~~ea-~~Lf~~~~- 143 (505)
||+|.+.+- .+...-..++.+.+.-.=+-|.+-|++-..+-. ...+..+.++....++- ..|+....
T Consensus 149 LIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 149 LIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred EEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHH
Confidence 999998652 122233334444443344557777776322111 12355677777776654 44443332
Q ss_pred -hCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 144 -ISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
.+-+. ...-..++.++.|.+.++|+.
T Consensus 229 ~LPLr~-~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 229 ALPLRK-PSNLASPELARRIHERSEGLI 255 (302)
T ss_pred hCCCCC-CCCCCCHHHHHHHHHHcCCch
Confidence 11111 112234678999999999987
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0085 Score=60.80 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe-CchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT-RKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt-r~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|+++.........+...+........+|++| +...+... ......+.+.+++.++....+...+-..+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3466799999997665545667777777655455555444 43333322 223458899999999998888776533221
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
...++++..+++.++|.+..+...
T Consensus 197 ----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 197 ----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123466788999999977544333
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.32 E-value=0.0038 Score=62.42 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC--ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE--KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||.||+.+++ +..++.. .+++++.. ++...+...+... ..+. +.+.+++ .-+||
T Consensus 144 ~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~----~~~~~~~-~dlLi 204 (405)
T TIGR00362 144 GVGLGKTHLLHAIGN--EILENNPNAKVVYVSSE------KFTNDFVNALRNN------KMEE----FKEKYRS-VDLLL 204 (405)
T ss_pred CCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC------CHHH----HHHHHHh-CCEEE
Confidence 379999999999998 5555442 34566532 3344455544311 1222 2223322 23889
Q ss_pred EeCCCCCCccC--hhHHHHhhcCC-CCCcEEEEEeCc-hHHH--------HHhCCcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 79 LDDVWNEDYYK--WEPFYKCLKNS-LHESKILITTRK-ETVA--------RIMGSTHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 79 lDdv~~~~~~~--~~~~~~~~~~~-~~~~~iLiTtr~-~~~~--------~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+||++...... .+.+...+... ..+..+++|+.. +... ..+.....+.+++.+.++-..++...+...
T Consensus 205 iDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 205 IDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 99996532111 12233323221 234568888764 2211 112223468899999999999998877443
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 046115 147 KTIGKRENLEKIGREIVKKCKGLPLAAKTIA 177 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 177 (505)
+. .-.++++..|++.+.+..-.+..+-
T Consensus 285 ~~----~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 285 GL----ELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CC----CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 22 1125677888888888776554443
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0074 Score=62.78 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+.+-++|+|+++.........+...+......+.+| +|++...+... ......+++.+++.++....+...+...+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi- 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI- 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 345578999997766556777888887765555544 45444444432 234568999999999988888765532221
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~ 175 (505)
.-.++.+..+++.++|..- |+..
T Consensus 205 ---~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 205 ---QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred ---CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 1134668889999999654 4443
No 118
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.013 Score=52.65 Aligned_cols=174 Identities=15% Similarity=0.166 Sum_probs=101.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChh-cHHHHHHHHHHHc-CCce-EEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLV-EFQSLMQHIEECV-AGKK-FLLV 78 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~l~~~l-~~~r-~Llv 78 (505)
-|+|||.+++.+... ..++=..+ -+......+...+...++..+......... ..++.-..+.... +++| ..++
T Consensus 60 vGsGKTv~~Ral~~s--~~~d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~ 136 (269)
T COG3267 60 VGSGKTVLRRALLAS--LNEDQVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLM 136 (269)
T ss_pred CCCchhHHHHHHHHh--cCCCceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEe
Confidence 389999999955442 22221122 233445566778888888888742222222 2233333444444 4566 9999
Q ss_pred EeCCCCCCccChhHHHHhhcC---CCCCcEEEEEeCc--------hHHHHHhCCcce-EeCCCCChhhHHHHHHHhhhCC
Q 046115 79 LDDVWNEDYYKWEPFYKCLKN---SLHESKILITTRK--------ETVARIMGSTHV-ISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~---~~~~~~iLiTtr~--------~~~~~~~~~~~~-~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+|+..+.....++.+.-...- .+..-+|+..-.. ......-....+ |++.+++.++...++.......
T Consensus 137 vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a 216 (269)
T COG3267 137 VDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGA 216 (269)
T ss_pred ehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhcc
Confidence 999977665555555544332 2111223332221 111111122334 8999999999999987765443
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHHHHHHH
Q 046115 147 KTIGKRENLEKIGREIVKKCKGLPLAAKTIASL 179 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 179 (505)
....+--..+++..|.+...|.|.+++.++..
T Consensus 217 -~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 217 -GLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred -CCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 22233334577888999999999999988763
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.25 E-value=0.0089 Score=59.98 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
..|+|||+||+.+++ ++...-..+++++. ..+...+...+..+ . ...+....+ ..-+|++|
T Consensus 149 ~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~------~~f~~~~~~~l~~~------~----~~~f~~~~~-~~dvLiID 209 (445)
T PRK12422 149 PEGSGKTHLMQAAVH--ALRESGGKILYVRS------ELFTEHLVSAIRSG------E----MQRFRQFYR-NVDALFIE 209 (445)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCCEEEeeH------HHHHHHHHHHHhcc------h----HHHHHHHcc-cCCEEEEc
Confidence 479999999999998 55433334556653 23444555554311 1 122333333 33488889
Q ss_pred CCCCCCcc--ChhHHHHhhcCC-CCCcEEEEEeCc-hHH--------HHHhCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 81 DVWNEDYY--KWEPFYKCLKNS-LHESKILITTRK-ETV--------ARIMGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 81 dv~~~~~~--~~~~~~~~~~~~-~~~~~iLiTtr~-~~~--------~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
|++..... ..+.+...+... ..|..||+||.. +.. ...+.....+++.+++.++-..++.+.+...+.
T Consensus 210 Diq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 210 DIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred chhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 98553211 112222222211 235578888854 221 222333458889999999999999887643322
Q ss_pred CCCCchHHHHHHHHHHHcCCCh
Q 046115 149 IGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~P 170 (505)
. -.++++..|++.+.+.-
T Consensus 290 -~---l~~evl~~la~~~~~di 307 (445)
T PRK12422 290 -R---IEETALDFLIEALSSNV 307 (445)
T ss_pred -C---CCHHHHHHHHHhcCCCH
Confidence 1 12455666777776544
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0089 Score=58.92 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=60.6
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeC-chHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTR-KETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr-~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++++|+++......+..+...+......+.+++++. ...+... .....+++..+++.++....+...+...+..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 3455899999966544446667666655444555555553 3333222 2234588999999999988887766433221
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
-.++++..+++.++|.+-
T Consensus 187 ----i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 ----FEDDALHIIAQKADGALR 204 (367)
T ss_pred ----CCHHHHHHHHHhCCCCHH
Confidence 124678888899998664
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0085 Score=62.85 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcE-EEEEeCchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESK-ILITTRKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iLiTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++.......+..++..+......+. |++|++...+... ......+++.+++.++....+...+...+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 4666889999977665567778877776554444 5555554444432 233468999999999999888765432222
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 177 (505)
....+++..+++.++|.+- |+..+-
T Consensus 196 ---~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 ---SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1124568889999999764 444433
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=97.22 E-value=0.011 Score=55.73 Aligned_cols=126 Identities=12% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCCCcHHHHHHHHhcCccccc-CC-CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVER-NF-EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||++|+.++. .... .+ ...-|+.++. ..+...+. +.. .......+... ..-+|+
T Consensus 67 ~pGtGKT~lAr~la~--~~~~~g~~~~~~~~~v~~--------~~l~~~~~-g~~-----~~~~~~~l~~a---~ggVLf 127 (287)
T CHL00181 67 SPGTGKTTVALKMAD--ILYKLGYIKKGHLLTVTR--------DDLVGQYI-GHT-----APKTKEVLKKA---MGGVLF 127 (287)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCCCCCceEEecH--------HHHHHHHh-ccc-----hHHHHHHHHHc---cCCEEE
Confidence 489999999999987 3211 11 1112444431 12222221 111 01111222222 224999
Q ss_pred EeCCCCC---------CccChhHHHHhhcCCCCCcEEEEEeCchHHHHHh--------CCcceEeCCCCChhhHHHHHHH
Q 046115 79 LDDVWNE---------DYYKWEPFYKCLKNSLHESKILITTRKETVARIM--------GSTHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 79 lDdv~~~---------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~--------~~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
+|++... .......+...+.+...+..||.++....+.... .-...+..++++.+|..+++..
T Consensus 128 IDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 128 IDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred EEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 9999542 1112344555555555667777777644332111 1134789999999999999987
Q ss_pred hhhC
Q 046115 142 LAIS 145 (505)
Q Consensus 142 ~~~~ 145 (505)
....
T Consensus 208 ~l~~ 211 (287)
T CHL00181 208 MLEE 211 (287)
T ss_pred HHHH
Confidence 7643
No 123
>PRK08116 hypothetical protein; Validated
Probab=97.21 E-value=0.0013 Score=61.44 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||.||..+++ ....+...++++++ .+++..+...+.... ... ...+.+.+.+-. ||||||
T Consensus 123 ~GtGKThLa~aia~--~l~~~~~~v~~~~~------~~ll~~i~~~~~~~~---~~~----~~~~~~~l~~~d-lLviDD 186 (268)
T PRK08116 123 VGTGKTYLAACIAN--ELIEKGVPVIFVNF------PQLLNRIKSTYKSSG---KED----ENEIIRSLVNAD-LLILDD 186 (268)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCeEEEEEH------HHHHHHHHHHHhccc---ccc----HHHHHHHhcCCC-EEEEec
Confidence 69999999999999 55444445667763 234444444443111 111 112333344333 899999
Q ss_pred CCCCCccCh--hHHHHhhcCC-CCCcEEEEEeCc
Q 046115 82 VWNEDYYKW--EPFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~--~~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
+..+....| ..+...+... ..+..+||||..
T Consensus 187 lg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 187 LGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 965433334 3344333322 345679999975
No 124
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.20 E-value=0.00013 Score=73.07 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+++|..|++.+|.+... ...+..+.+|++|+++ .+.+..+.. +..++.|+.|++++|. +..++. +
T Consensus 93 ~~~~l~~l~l~~n~i~~i----~~~l~~~~~L~~L~ls-------~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~ 158 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKI----ENLLSSLVNLQVLDLS-------FNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-L 158 (414)
T ss_pred cccceeeeeccccchhhc----ccchhhhhcchheecc-------ccccccccc-hhhccchhhheeccCc-chhccC-C
Confidence 556666666666665432 1114456666666666 555555543 4555556666666666 555554 4
Q ss_pred hcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCc
Q 046115 434 CELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTG 472 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 472 (505)
..+.+|+.+++++|+ +..++.. ...+.+|+.+.+.+|.
T Consensus 159 ~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 446666666666666 4444432 3555666666666654
No 125
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.20 E-value=0.0026 Score=62.60 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=74.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHH-HHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIE-ECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~r~Llvl 79 (505)
++|+|||++|+.+++ +....| +.+.. ..+..... .........+. ..-...+.+|++
T Consensus 164 ppGtGKT~lakaia~--~l~~~~-----~~v~~--------~~l~~~~~-------g~~~~~i~~~f~~a~~~~p~il~i 221 (364)
T TIGR01242 164 PPGTGKTLLAKAVAH--ETNATF-----IRVVG--------SELVRKYI-------GEGARLVREIFELAKEKAPSIIFI 221 (364)
T ss_pred CCCCCHHHHHHHHHH--hCCCCE-----Eecch--------HHHHHHhh-------hHHHHHHHHHHHHHHhcCCcEEEh
Confidence 479999999999998 454443 22211 11111110 00111111222 222345789999
Q ss_pred eCCCCCC-----------c---cChhHHHHhhcC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNED-----------Y---YKWEPFYKCLKN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~-----------~---~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++... . ..+..+...+.. ...+..|+.||....... .. +. ...+.++..+.++..++
T Consensus 222 DEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~I 301 (364)
T TIGR01242 222 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI 301 (364)
T ss_pred hhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHH
Confidence 9985421 0 012222222222 134677888887643221 11 11 35788999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|..+...... ....+ ...+++.+.|..
T Consensus 302 l~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 302 LKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 9887643222 11122 446777776654
No 126
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0018 Score=53.80 Aligned_cols=107 Identities=17% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCc-eEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGK-KFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-r~Llvl 79 (505)
.+|+||||+|+.++. ........+++++............. .... ....................... ..+|++
T Consensus 10 ~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~viii 84 (148)
T smart00382 10 PPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIV-GGKKASGSGELRLRLALALARKLKPDVLIL 84 (148)
T ss_pred CCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhh-hccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 479999999999998 44444345666765554332222221 1111 11111222222223333333333 489999
Q ss_pred eCCCCCCccChhHHHH--------hhcCCCCCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYK--------CLKNSLHESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~--------~~~~~~~~~~iLiTtr~ 112 (505)
|++............. .......+..++.|+..
T Consensus 85 Dei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 9997754322222111 11122345667777773
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0098 Score=59.91 Aligned_cols=102 Identities=12% Similarity=0.153 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+...+.+....+.+|++|.+ ..+... ......+++.+++.++....+...+...+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45678899999665544556677777776556666655543 333322 223458899999999999888776532221
Q ss_pred CCCchHHHHHHHHHHHcCCChH-HHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL-AAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 177 (505)
.-.++++..|++.++|.+- |+..+-
T Consensus 199 ---~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 ---ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1235678889999999764 444433
No 128
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=9.3e-05 Score=74.18 Aligned_cols=106 Identities=27% Similarity=0.391 Sum_probs=85.2
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+..+..+.+..|.+.. +-..++.+++|..|++. ++.+..+...+..+.+|++|++++|. ++.+.. +
T Consensus 70 ~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-L 136 (414)
T ss_pred HhHhHHhhccchhhhhh----hhcccccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-cccccc-h
Confidence 45556666666666543 22236788999999998 77788877668899999999999999 888887 8
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCccc
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 474 (505)
..+..|+.|++++|. +..++ .+..+++|+.+++++|...
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhh
Confidence 889999999999999 88875 4566899999999999844
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.16 E-value=0.0084 Score=60.27 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=96.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-C-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-E-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||.||..+++ ++...+ . .++|++. .++...+...+... ..++ .........-+|+
T Consensus 138 ~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~~~~~dvLl 199 (440)
T PRK14088 138 GVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKYRKKVDVLL 199 (440)
T ss_pred CCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHHHhcCCEEE
Confidence 379999999999998 555543 2 3557764 34555665555411 1122 2223323345899
Q ss_pred EeCCCCCCc-cCh-hHHHHhhcCC-CCCcEEEEEeC-chHHH----H----HhCCcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 79 LDDVWNEDY-YKW-EPFYKCLKNS-LHESKILITTR-KETVA----R----IMGSTHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 79 lDdv~~~~~-~~~-~~~~~~~~~~-~~~~~iLiTtr-~~~~~----~----~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+||++.... ... +.+...+... ..+..|++||. .+.-. . .+.....+.+++.+.++-..++++.+...
T Consensus 200 IDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 200 IDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred EechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 999964311 011 1222222211 23457888874 33221 1 22334478899999999999998876432
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh------cc-CCCHHHHHHHHhh
Q 046115 147 KTIGKRENLEKIGREIVKKCKGLPLAAKTIASLL------RS-KNTEKEWQNILEN 195 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~-~~~~~~~~~~l~~ 195 (505)
+. . -.++++..|++.+.|.--.|..+-..+ .+ ..+....++.+..
T Consensus 280 ~~-~---l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 280 HG-E---LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred CC-C---CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 22 1 124678888888887665554443332 11 1255555555553
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.016 Score=60.67 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........++..+......+.+|++|.+ ..+...+ .....+++..++.++....+...+...+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 45568899999776655677788888776555555444444 3333222 23457888899999988888765533221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.-.++++..+++.++|.+.....
T Consensus 199 ---~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 199 ---EIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11245688899999998754433
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.16 E-value=0.0085 Score=61.58 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=88.6
Q ss_pred CCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.|+|||.|+..+++ +....+ ..+++++.. ++...+...+... . ...+.+.+.+ -=+|||
T Consensus 323 sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitae------ef~~el~~al~~~------~----~~~f~~~y~~-~DLLlI 383 (617)
T PRK14086 323 SGLGKTHLLHAIGH--YARRLYPGTRVRYVSSE------EFTNEFINSIRDG------K----GDSFRRRYRE-MDILLV 383 (617)
T ss_pred CCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc------c----HHHHHHHhhc-CCEEEE
Confidence 69999999999998 554433 234566643 3444444444310 1 1122233332 247889
Q ss_pred eCCCCCCcc-Ch-hHHHHhhcCC-CCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 80 DDVWNEDYY-KW-EPFYKCLKNS-LHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 80 Ddv~~~~~~-~~-~~~~~~~~~~-~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
||++..... .+ +.+...+... ..+..|||||+.. .+...+....++.+...+.+.-..++.+.+....
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 999653221 11 2233333222 2356788888762 2333344566889999999999999988775433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
. .. .++++..|++.+.+..-.|..+-.
T Consensus 464 l-~l---~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 464 L-NA---PPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred C-CC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 2 11 246777788887766555544433
No 132
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0013 Score=54.08 Aligned_cols=92 Identities=18% Similarity=0.078 Sum_probs=50.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCC-ceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAG-KKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~Llvl 79 (505)
.+|+|||++|+.+++ ... ...+.++...-. . .............+.+.-.. ++.+|++
T Consensus 6 ~~G~GKT~l~~~la~--~l~---~~~~~i~~~~~~-------------~---~~~~~~~~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 6 PPGTGKTTLARALAQ--YLG---FPFIEIDGSELI-------------S---SYAGDSEQKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp STTSSHHHHHHHHHH--HTT---SEEEEEETTHHH-------------T---SSTTHHHHHHHHHHHHHHHTSTSEEEEE
T ss_pred cCCCCeeHHHHHHHh--hcc---cccccccccccc-------------c---ccccccccccccccccccccccceeeee
Confidence 479999999999998 432 123455543210 0 01112222223333332223 4799999
Q ss_pred eCCCCCCccC-----------hhHHHHhhcCCC---CCcEEEEEeCch
Q 046115 80 DDVWNEDYYK-----------WEPFYKCLKNSL---HESKILITTRKE 113 (505)
Q Consensus 80 Ddv~~~~~~~-----------~~~~~~~~~~~~---~~~~iLiTtr~~ 113 (505)
||++.-.... ...+...+.... .+..|+.||...
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 9996543333 445555555443 346777777763
No 133
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.15 E-value=0.0076 Score=61.07 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=87.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC--ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE--KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||.||+.+++ +...++. .+++++.. ++...+...+... .. ..+.+.++ ..-+||
T Consensus 156 ~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~----~~~~~~~~-~~dlLi 216 (450)
T PRK00149 156 GVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TM----EEFKEKYR-SVDVLL 216 (450)
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cH----HHHHHHHh-cCCEEE
Confidence 379999999999999 6655543 34466543 2334444444311 11 22233333 234899
Q ss_pred EeCCCCCCcc--ChhHHHHhhcCC-CCCcEEEEEeCch-H----H----HHHhCCcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 79 LDDVWNEDYY--KWEPFYKCLKNS-LHESKILITTRKE-T----V----ARIMGSTHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 79 lDdv~~~~~~--~~~~~~~~~~~~-~~~~~iLiTtr~~-~----~----~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+||++..... ..+.+...+... ..+..+++||... . + ...+.....+++++.+.++-..++...+...
T Consensus 217 iDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 217 IDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 9999653211 112222222211 2345688887653 1 1 2223334578999999999999998877432
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 147 KTIGKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
+. .-.++++..|++.+.|..-.+..+
T Consensus 297 ~~----~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 297 GI----DLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred CC----CCCHHHHHHHHcCcCCCHHHHHHH
Confidence 21 123567888999998887655444
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.13 E-value=0.0097 Score=56.12 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=43.4
Q ss_pred EEEEEeCCCCC---------CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH--hC------CcceEeCCCCChhhHHH
Q 046115 75 FLLVLDDVWNE---------DYYKWEPFYKCLKNSLHESKILITTRKETVARI--MG------STHVISVNVLSEMECWS 137 (505)
Q Consensus 75 ~LlvlDdv~~~---------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~--~~------~~~~~~l~~l~~~ea~~ 137 (505)
-+|++|++..- .......+...+.....+.+||.++........ .. -...+.+++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999532 111234555666555566677777654322111 11 13478899999999999
Q ss_pred HHHHhhh
Q 046115 138 VFQSLAI 144 (505)
Q Consensus 138 Lf~~~~~ 144 (505)
++....-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9887753
No 135
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.007 Score=57.65 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+++.+.....++.+|++|.++ .+... ......+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 356789999998777667778888888877777777777653 33322 2335578899999999998886531
Q ss_pred CCCchHHHHHHHHHHHcCCChHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAA 173 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal 173 (505)
.+ ++.+..++..++|.|+..
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLA 205 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHH
Confidence 11 223667899999999754
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0034 Score=63.79 Aligned_cols=99 Identities=9% Similarity=0.102 Sum_probs=68.1
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........++..+......+++|++|.++ .+... ......+++.+++.++....+...+...+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999998777666777888887766667766666553 22221 123468899999999999988766533222
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAK 174 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~ 174 (505)
.-.++++..|++.++|.+.-+.
T Consensus 195 ---~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 195 ---SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ---CCCHHHHHHHHHHcCCcHHHHH
Confidence 1235678899999999884433
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.08 E-value=0.006 Score=63.92 Aligned_cols=113 Identities=12% Similarity=0.014 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEE--EeCchHH-HHHh-CCcceEeCCCCChhhHHH
Q 046115 62 LMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILI--TTRKETV-ARIM-GSTHVISVNVLSEMECWS 137 (505)
Q Consensus 62 ~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLi--Ttr~~~~-~~~~-~~~~~~~l~~l~~~ea~~ 137 (505)
.+..+.+.+.++++.++-|+.|..+...|..+...+....+...++| ||+++.. ...+ .....+.+.+++.+|...
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 34566667777777777666666555556666555555555555666 6665431 1111 223467789999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 046115 138 VFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 138 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
++...+..... .-.+++...|.+.+..-+-++..++.
T Consensus 361 Il~~~a~~~~v----~ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINV----HLAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99886642211 11134455555544433455554443
No 138
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=3.8e-05 Score=77.69 Aligned_cols=124 Identities=22% Similarity=0.247 Sum_probs=90.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
++..++++.+.......++ .-++.|+.|+|++|++... . ++..+++|+.|||+ .|.+...|.--
T Consensus 165 ~L~~a~fsyN~L~~mD~SL----qll~ale~LnLshNk~~~v----~-~Lr~l~~LkhLDls-------yN~L~~vp~l~ 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESL----QLLPALESLNLSHNKFTKV----D-NLRRLPKLKHLDLS-------YNCLRHVPQLS 228 (1096)
T ss_pred hHhhhhcchhhHHhHHHHH----HHHHHhhhhccchhhhhhh----H-HHHhcccccccccc-------cchhccccccc
Confidence 4444555444443333333 2568999999999998653 2 47889999999998 67777777522
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccch--hccccccCceeecCCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~ 472 (505)
..=.+|..|.++||. ++.+-. +.+|.+|+.||++.|- +..... -++.|..|+.|.+.||+
T Consensus 229 ~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGCKLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 222349999999998 888877 8899999999999987 544432 25778889999999998
No 139
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.06 E-value=0.00012 Score=58.60 Aligned_cols=85 Identities=28% Similarity=0.351 Sum_probs=49.3
Q ss_pred hhcCcccceEEecccccCCccccccccCccccC-CCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhc
Q 046115 379 FEKLTCLRALELQVRESWPRNNLIKEIPTNIEK-LLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGI 457 (505)
Q Consensus 379 ~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~ 457 (505)
+.....|...+|+ +|.++.+|+.+.. .+.++.|++++|. +..+|..+..++.|+.|+++.|+ +...|.-+
T Consensus 49 l~~~~el~~i~ls-------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLS-------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEecc-------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 3444455555665 5555556555542 3356666666666 66666666666666666666666 55555555
Q ss_pred cccccCceeecCCCc
Q 046115 458 GKLRKLMYLHNEDTG 472 (505)
Q Consensus 458 ~~l~~L~~L~l~~~~ 472 (505)
..|.+|-.|+..+|.
T Consensus 120 ~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA 134 (177)
T ss_pred HHHHhHHHhcCCCCc
Confidence 556666666655554
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0081 Score=58.56 Aligned_cols=130 Identities=17% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|.|||-|+.++++ ...........+.+.. +......+..+.. ...+...+.. .-=++++||
T Consensus 122 ~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~----------~~~~~Fk~~y--~~dlllIDD 183 (408)
T COG0593 122 VGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD----------NEMEKFKEKY--SLDLLLIDD 183 (408)
T ss_pred CCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh----------hhHHHHHHhh--ccCeeeech
Confidence 59999999999999 6666655333333322 2344444444441 1222333333 223889999
Q ss_pred CCCCCc--cChhHHHHhhcCC-CCCcEEEEEeCc---------hHHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 82 VWNEDY--YKWEPFYKCLKNS-LHESKILITTRK---------ETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 82 v~~~~~--~~~~~~~~~~~~~-~~~~~iLiTtr~---------~~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
++-..- ..-+.+...+..- ..|-+|++|++. +.+.....+...+++.+.+.+....++...+...+..
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~ 263 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE 263 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 855221 1122233323221 233489998865 2334445566789999999999999998876544443
No 141
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.99 E-value=0.0091 Score=59.13 Aligned_cols=141 Identities=20% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
-++||||+++.+.. ...+. .++++.-+......-+.+..... ...-..++..|+||.
T Consensus 46 R~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~~~------------------~~~~~~~~~yifLDE 102 (398)
T COG1373 46 RQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLRAY------------------IELKEREKSYIFLDE 102 (398)
T ss_pred ccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHHHH------------------HHhhccCCceEEEec
Confidence 47999999977766 33333 55665443222211111111111 111112788999999
Q ss_pred CCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHH-----H-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCchH
Q 046115 82 VWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR-----I-MGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENL 155 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-----~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~ 155 (505)
|+... .|...+..+.+.++. +|++|+.+..+.. . .+....+.+.||+..|-..+-. ...... ..
T Consensus 103 Iq~v~--~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~------~~~~~~-~~ 172 (398)
T COG1373 103 IQNVP--DWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG------EEIEPS-KL 172 (398)
T ss_pred ccCch--hHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc------cccchh-HH
Confidence 97654 899999999988877 8899888754432 2 2346688999999999655432 000000 11
Q ss_pred HHHHHHHHHHcCCChHHHHHH
Q 046115 156 EKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 156 ~~~~~~i~~~~~g~Plal~~~ 176 (505)
.. .-+-.-..||.|.++..-
T Consensus 173 ~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 173 EL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred HH-HHHHHHHhCCCcHHHhCc
Confidence 11 333445679999876543
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.027 Score=58.97 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEE-EeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILI-TTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLi-Ttr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+...+......+.+|+ |++...+...+ ....++++.+++.++....+...+...+.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi- 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI- 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 3455889999977766667788888887655565544 54544444332 33568999999999999988876543322
Q ss_pred CCCchHHHHHHHHHHHcCCChHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
.-.++++..|++.++|..--
T Consensus 199 ---~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 199 ---TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred ---CCCHHHHHHHHHHcCCCHHH
Confidence 12245688899999997643
No 143
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.97 E-value=0.0077 Score=58.08 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHH-HcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEE-CVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~r~Llvl 79 (505)
.+|+|||++|+.+++ +... ....++... .. ....+..+..+. .. ...+.+-++|+
T Consensus 51 ~~G~GKT~la~~l~~--~~~~---~~~~i~~~~-~~-~~~i~~~l~~~~-----------------~~~~~~~~~~vlii 106 (316)
T PHA02544 51 SPGTGKTTVAKALCN--EVGA---EVLFVNGSD-CR-IDFVRNRLTRFA-----------------STVSLTGGGKVIII 106 (316)
T ss_pred cCCCCHHHHHHHHHH--HhCc---cceEeccCc-cc-HHHHHHHHHHHH-----------------HhhcccCCCeEEEE
Confidence 479999999999998 4322 223444443 11 111111111110 00 01234567899
Q ss_pred eCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchH-HHHH-hCCcceEeCCCCChhhHHHHHHH
Q 046115 80 DDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKET-VARI-MGSTHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 80 Ddv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~-~~~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
|++... .......+...+.....++.+++||.... +... ......+.++..+.++..+++..
T Consensus 107 De~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 107 DEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 999654 22222334444555566788888887542 1111 12234677777788887766543
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.033 Score=58.02 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+...+......+.+| +||....+...+ .....+++..++.++....+.......+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi- 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI- 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-
Confidence 355678899997766556777888887765555555 455444444332 23457889999999988888765432221
Q ss_pred CCCchHHHHHHHHHHHcCCCh-HHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLP-LAAKTIAS 178 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 178 (505)
.-..+.+..|++.++|.. .|+..+-.
T Consensus 197 ---~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 197 ---SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122466788999999866 55555433
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.0012 Score=69.65 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=82.6
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccc-ccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIE-KLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~ 432 (505)
-+++|++|.+.+-.+.... .-..+.++++|++||++ ++.+..+ .+++.|++|+.|.+.+-.... ..-..
T Consensus 146 ~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS-------~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDIS-------GTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hCcccceEEecCceecchh--HHHHhhccCccceeecC-------CCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 3589999999987764321 44557789999999999 7777777 678999999999999877332 22234
Q ss_pred hhcCCCCcEEecCCCcCccc--cch----hccccccCceeecCCCcccccc
Q 046115 433 LCELYNLERLNVDDCQNLRE--LPR----GIGKLRKLMYLHNEDTGCLRYL 477 (505)
Q Consensus 433 ~~~l~~L~~L~l~~~~~~~~--lp~----~~~~l~~L~~L~l~~~~~~~~~ 477 (505)
+..|.+|+.||+|....... +.. --..||.|+.|+.+++.+...+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 78899999999998653321 111 1255899999999988754433
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.026 Score=53.91 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
+++-++|+|++..........+++.+....+..-||+|++...+.+.+ .....+.+.+++.++..+.+........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---
Confidence 466789999997776666777888887766444444554444443332 3356899999999999999987542111
Q ss_pred CCchHHHHHHHHHHHcCCChHHHHH
Q 046115 151 KRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.+.....++..++|.|.....
T Consensus 200 ----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ----chhHHHHHHHHcCCCHHHHHH
Confidence 111135788899999965433
No 147
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.019 Score=56.77 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=81.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||.+++.+ ..|..+--++-..- .+ -.+............+..+..=-.||+|
T Consensus 546 p~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG---~sEsaKc~~i~k~F~DAYkS~lsiivvD 605 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IG---LSESAKCAHIKKIFEDAYKSPLSIIVVD 605 (744)
T ss_pred CCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cC---ccHHHHHHHHHHHHHHhhcCcceEEEEc
Confidence 4799999999999973 56766554432211 01 1112222333444555667777899999
Q ss_pred CCCCCCccCh------------hH---HHHhhcCCCCCcEEEEEeCchHHHHHhCC----cceEeCCCCCh-hhHHHHHH
Q 046115 81 DVWNEDYYKW------------EP---FYKCLKNSLHESKILITTRKETVARIMGS----THVISVNVLSE-MECWSVFQ 140 (505)
Q Consensus 81 dv~~~~~~~~------------~~---~~~~~~~~~~~~~iLiTtr~~~~~~~~~~----~~~~~l~~l~~-~ea~~Lf~ 140 (505)
|+.. ..+| +. +++..|+.++..-|+-||..+.+...++- ...+.++.++. ++..+.++
T Consensus 606 diEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 606 DIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred chhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 9933 2232 22 22333444455567778888888887654 34778888887 66667666
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHHc
Q 046115 141 SLAISGKTIGKRENLEKIGREIVKKC 166 (505)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (505)
..- ...+.+.+.++.+....|
T Consensus 684 ~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 684 ELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred Hcc-----CCCcchhHHHHHHHhccc
Confidence 542 122333444555555555
No 148
>PRK04132 replication factor C small subunit; Provisional
Probab=96.88 E-value=0.034 Score=59.68 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=94.5
Q ss_pred CCCCcHHHHHHHHhcCccc-ccCCC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDV-ERNFE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
+.++||||+|..+++ +. .+.++ .++-++.+...... ..++++..+...... -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~--~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALAR--ELFGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHH--hhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCEEEE
Confidence 457999999999999 44 22332 35567766644443 334444333211110 012457999
Q ss_pred EeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHH
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLE 156 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~ 156 (505)
+|+++.........+...+......++++.++.+. .+...+ .....+.+.+++.++....+...+...+. . -.+
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~---i~~ 711 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LTE 711 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C---CCH
Confidence 99998877667777888887766667777666653 333222 23568899999999988888766532221 1 124
Q ss_pred HHHHHHHHHcCCChH
Q 046115 157 KIGREIVKKCKGLPL 171 (505)
Q Consensus 157 ~~~~~i~~~~~g~Pl 171 (505)
+.+..|++.++|.+.
T Consensus 712 e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 712 EGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHHHcCCCHH
Confidence 578899999999884
No 149
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.85 E-value=0.017 Score=53.84 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=40.9
Q ss_pred EEEEEeCCCCCC--------ccChhHHHHhhcCCCCCcEEEEEeCchHHHH------Hh-CC-cceEeCCCCChhhHHHH
Q 046115 75 FLLVLDDVWNED--------YYKWEPFYKCLKNSLHESKILITTRKETVAR------IM-GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 75 ~LlvlDdv~~~~--------~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~------~~-~~-~~~~~l~~l~~~ea~~L 138 (505)
.+|++|++..-. ......+...+........+++++....+.. .. .. ...+.+++++.+|-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 488999996421 1123445555555444445555554432211 11 11 24688999999999999
Q ss_pred HHHhhh
Q 046115 139 FQSLAI 144 (505)
Q Consensus 139 f~~~~~ 144 (505)
+.+...
T Consensus 187 l~~~~~ 192 (261)
T TIGR02881 187 AERMVK 192 (261)
T ss_pred HHHHHH
Confidence 987764
No 150
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0013 Score=56.50 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=26.6
Q ss_pred ccCCCCcceeeccCCccccccchhhh-cCCCCcEEecCCCcCccccch--hccccccCceeecCCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLC-ELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~ 472 (505)
+..++.|.+|.+.+|+ ++.+-+.+. .+++|..|.|.+|+ +..+-+ .+..+|+|++|.+-+|+
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCc
Confidence 3444445555555444 433333232 33445555555544 333321 12334445555544444
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.051 Score=56.25 Aligned_cols=98 Identities=9% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|++.......+..+...+......+.+|.+|.+ ..+...+ .....++..+++.++....+...+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999776665677788887766566666555543 3443322 23457889999999998888776533222
Q ss_pred CCCCchHHHHHHHHHHHcCCChHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
.-.++++..|++.++|.+-.
T Consensus 197 ----~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 197 ----KYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred ----CCCHHHHHHHHHHcCCCHHH
Confidence 12356788899999998743
No 152
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.032 Score=53.31 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+++.+.....++.+|++|.++ .+... ...-..+.+.+++.+++.+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 456688899998887777888999998887777877777764 33322 23356889999999999998876531
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
.+ ...+...+..++|.|.
T Consensus 181 --~~--~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 181 --AE--ISEILTALRINYGRPL 198 (325)
T ss_pred --cC--hHHHHHHHHHcCCCHH
Confidence 11 1225567889999995
No 153
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00063 Score=60.91 Aligned_cols=85 Identities=25% Similarity=0.227 Sum_probs=41.5
Q ss_pred CCCCcceeeccCC--ccccccchhhhcCCCCcEEecCCCcCccccc--hhccccccCceeecCCCcccccccc----ccc
Q 046115 411 KLLHLKYLNLKGQ--KKIEKLPETLCELYNLERLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLPA----GIG 482 (505)
Q Consensus 411 ~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~i~ 482 (505)
.|++|++|.++.| .....++-..-++++|++|++++|+ ++.+- +.+..+.+|..|++..|.... +-. .|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccc-cccHHHHHHH
Confidence 3455555555555 3334444434444566666666655 33211 123444555556655554322 211 244
Q ss_pred CCccCCccceeEecC
Q 046115 483 ELIRLRRVREFVVGG 497 (505)
Q Consensus 483 ~l~~L~~L~~~~~~~ 497 (505)
-+++|++|+.+.|.+
T Consensus 141 ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDG 155 (260)
T ss_pred HhhhhccccccccCC
Confidence 556666666665554
No 154
>PRK08181 transposase; Validated
Probab=96.73 E-value=0.0039 Score=57.92 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||.||..+++ +...+...++|++. .+++..+..... ....++.. ..+. +-=|||+|
T Consensus 114 p~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l----~~l~-~~dLLIID 174 (269)
T PRK08181 114 PPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARR------ELQLESAI----AKLD-KFDLLILD 174 (269)
T ss_pred cCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHH----HHHh-cCCEEEEe
Confidence 479999999999988 44444445566653 234444432211 11122222 2222 23499999
Q ss_pred CCCCCCccCh--hHHHHhhcCCCCCcEEEEEeCch
Q 046115 81 DVWNEDYYKW--EPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 81 dv~~~~~~~~--~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
|+.......+ ..+...+........+||||+-+
T Consensus 175 Dlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9965432222 23444444332234689998853
No 155
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.71 E-value=0.0039 Score=56.38 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
.+|+|||+|+..+.. .....|.++++++-
T Consensus 21 ~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 21 KSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 379999999999998 67888988887754
No 156
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.71 E-value=0.013 Score=58.06 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHH-HHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQH-IEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-l~~~l~~~r~Llvl 79 (505)
++|+|||++|+.+++ +.... |+.+.. ..+..... + +....... +...-...+.+|+|
T Consensus 173 ppGtGKT~lAkaia~--~~~~~-----~i~v~~--------~~l~~~~~-g------~~~~~i~~~f~~a~~~~p~Ilfi 230 (389)
T PRK03992 173 PPGTGKTLLAKAVAH--ETNAT-----FIRVVG--------SELVQKFI-G------EGARLVRELFELAREKAPSIIFI 230 (389)
T ss_pred CCCCChHHHHHHHHH--HhCCC-----EEEeeh--------HHHhHhhc-c------chHHHHHHHHHHHHhcCCeEEEE
Confidence 489999999999998 44333 232221 11111111 0 01111122 22222345789999
Q ss_pred eCCCCCC----------ccCh-hHHHHhh---cC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNED----------YYKW-EPFYKCL---KN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~----------~~~~-~~~~~~~---~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++.-. ...+ ..+...+ .. ...+..||.||...+... .. +. ...+.++..+.++-.++
T Consensus 231 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~I 310 (389)
T PRK03992 231 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEI 310 (389)
T ss_pred echhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHH
Confidence 9985420 0011 1122222 21 123566777887643322 11 11 35789999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|+.+...... ....+ ...+++.+.|+-
T Consensus 311 l~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 311 LKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred HHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 9877532221 22222 345666666644
No 157
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00032 Score=63.78 Aligned_cols=134 Identities=19% Similarity=0.141 Sum_probs=59.8
Q ss_pred ccCCCCCCCceEEEecCCCcccccc-chhHHhhcCcccceEEecccccCCccccccc-cCc-ccc-CCCCcceeeccCCc
Q 046115 349 WGNVTGLRGLRSLLVKSDEYSWSSE-VLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPT-NIE-KLLHLKYLNLKGQK 424 (505)
Q Consensus 349 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~-~~~-~l~~L~~L~l~~~~ 424 (505)
...+.+-.+|+.|+++.+. |+++ .+.-.+.+++.|..|+|+ .+.... .-. .+. -=.+|..|+|+|+.
T Consensus 227 ~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~~LNls-------Wc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLDELNLS-------WCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred HHHHhccccceeecccccc--ccchhHHHHHHHhhhhHhhcCch-------HhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 3344466777777777664 2221 122235566666666665 111100 000 000 01234455555553
Q ss_pred cc---cccchhhhcCCCCcEEecCCCcCccc-cchhccccccCceeecCCCccccccccc---ccCCccCCcccee
Q 046115 425 KI---EKLPETLCELYNLERLNVDDCQNLRE-LPRGIGKLRKLMYLHNEDTGCLRYLPAG---IGELIRLRRVREF 493 (505)
Q Consensus 425 ~~---~~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~---i~~l~~L~~L~~~ 493 (505)
.. ..+..-..++++|..|||+.|-.++. .-..+.+++.|++|.++-|. +..|.. +...++|.+|+.+
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence 21 12222223556666666666544332 11234555566666666554 233332 3444555555544
No 158
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00012 Score=65.76 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccch--hccccccCceeecCCCccc
Q 046115 411 KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~ 474 (505)
+++.|++|.|+-|. ++.+.+ +..|.+|++|.|+.|. +..+-+ .+.++|+|++|-+..|+..
T Consensus 39 kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence 44444444444444 444443 4444444444444444 333322 2444444444444444433
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.66 E-value=0.00097 Score=70.28 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhc
Q 046115 356 RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCE 435 (505)
Q Consensus 356 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 435 (505)
.+|+.|++.|.... ....+...-..+++|+.|.+.++.. ....+-.-+.++++|..||++++. ++.+ ..++.
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCC-ccCc-HHHhc
Confidence 57788888776532 1122333334688999999984321 111223335689999999999999 8888 45999
Q ss_pred CCCCcEEecCCCcCccccc--hhccccccCceeecCCCc
Q 046115 436 LYNLERLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 436 l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~ 472 (505)
|+|||.|.+.+=. ....+ ..+-+|++|+.||++...
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 9999999988733 33322 247889999999998775
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.0028 Score=57.89 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||+||..+++ .....-..++++++ .+++..+-.... . ...... .+.+.+. +.=+||+||
T Consensus 108 ~GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~-~---~~~~~~----~~l~~l~-~~dlLvIDD 170 (244)
T PRK07952 108 PGTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFS-N---SETSEE----QLLNDLS-NVDLLVIDE 170 (244)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHh-h---ccccHH----HHHHHhc-cCCEEEEeC
Confidence 79999999999998 55444445566643 334443333321 0 111111 2333344 334888899
Q ss_pred CCCCCccChhH--HHHhhcCC-CCCcEEEEEeCc
Q 046115 82 VWNEDYYKWEP--FYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~--~~~~~~~~-~~~~~iLiTtr~ 112 (505)
+.......|+. +...+... .....+||||.-
T Consensus 171 ig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 171 IGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 97765555543 33333322 234568888874
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.019 Score=55.51 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHHH
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
+.+-++|+|++..........+++.+.+...++.+|.+|.++ .+.+.+ .....+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 455679999997777666778888888877777777777653 233222 3356899999999999888865
No 162
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.0021 Score=55.93 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
..|+|||.||..+++ +...+=..+.|++. .+++..+...... ....+... .+.+ -=|||||
T Consensus 55 ~~G~GKThLa~ai~~--~~~~~g~~v~f~~~----------~~L~~~l~~~~~~--~~~~~~~~----~l~~-~dlLilD 115 (178)
T PF01695_consen 55 PPGTGKTHLAVAIAN--EAIRKGYSVLFITA----------SDLLDELKQSRSD--GSYEELLK----RLKR-VDLLILD 115 (178)
T ss_dssp STTSSHHHHHHHHHH--HHHHTT--EEEEEH----------HHHHHHHHCCHCC--TTHCHHHH----HHHT-SSCEEEE
T ss_pred hHhHHHHHHHHHHHH--HhccCCcceeEeec----------Cceeccccccccc--cchhhhcC----cccc-ccEeccc
Confidence 379999999999988 44333234567763 2344444322111 11222222 2222 2388899
Q ss_pred CCCCCCccCh--hHHHHhhcCCCCCcEEEEEeCc
Q 046115 81 DVWNEDYYKW--EPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~--~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
|+.......| ..+...+........+||||.-
T Consensus 116 DlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 116 DLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp TCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 9966543332 2222222222122368888884
No 163
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.08 Score=54.97 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEE-EEeCchHHHHHh-CCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKIL-ITTRKETVARIM-GSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iL-iTtr~~~~~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.+++-++|+|++.......+..+...+......+.+| +||....+...+ .....++..+++.++....+...+...+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 3456788999997766556777777776654444444 454443333222 23457889999999998888776533222
Q ss_pred CCCCchHHHHHHHHHHHcCCChHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
.-.++++..|++.++|.+..
T Consensus 197 ----~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 197 ----EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred ----CCCHHHHHHHHHHcCCCHHH
Confidence 11246678889999887753
No 164
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.62 E-value=0.00019 Score=72.75 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=85.6
Q ss_pred CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhh-c
Q 046115 357 GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLC-E 435 (505)
Q Consensus 357 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~ 435 (505)
.|.+-+.++|.+.- +...+.-+..|+.|+|+ +|.+.+.- .+..|++|++|||+.|. +..+|. ++ .
T Consensus 165 ~L~~a~fsyN~L~~----mD~SLqll~ale~LnLs-------hNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~-l~~~ 230 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL----MDESLQLLPALESLNLS-------HNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQ-LSMV 230 (1096)
T ss_pred hHhhhhcchhhHHh----HHHHHHHHHHhhhhccc-------hhhhhhhH-HHHhcccccccccccch-hccccc-cchh
Confidence 35555566666542 55567778889999998 55555544 57889999999999999 888887 43 2
Q ss_pred CCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc-ccccCCccCCcccee
Q 046115 436 LYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREF 493 (505)
Q Consensus 436 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~ 493 (505)
-..|+.|+|+||- ++.+. ++.+|++|+.|++++|-..+.-- ..+..|.+|+.|.+.
T Consensus 231 gc~L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred hhhheeeeecccH-HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 2349999999988 77773 78999999999999995332211 113455566655543
No 165
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.048 Score=51.95 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+.+.+.....++.+|.+|.++ .+..- ...-..+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 345688999998877777788999988877777777766664 33332 3345688999999999999886531 1
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAK 174 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~ 174 (505)
. .+..++..++|.|+...
T Consensus 182 --~-----~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 182 --T-----VPAYALKLNMGSPLKTL 199 (319)
T ss_pred --c-----hHHHHHHHcCCCHHHHH
Confidence 1 13467889999998543
No 166
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.042 Score=52.95 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+++.+.+...++.+|.+|.++ .+..- ......+.+.+++.+++.+.+....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV------ 180 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc------
Confidence 466789999998877777788999998877777777777664 34332 2334578899999999988886532
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 046115 150 GKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
..+ .+.+..++..++|.|.
T Consensus 181 ~~~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 181 TMS---QDALLAALRLSAGAPG 199 (334)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 2336678999999995
No 167
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.59 E-value=0.021 Score=62.16 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCCC-------CccChhHHHHhhcCCCCCcEEEEEeCchHHHH-------HhCCcceEeCCCCChhhHHH
Q 046115 72 GKKFLLVLDDVWNE-------DYYKWEPFYKCLKNSLHESKILITTRKETVAR-------IMGSTHVISVNVLSEMECWS 137 (505)
Q Consensus 72 ~~r~LlvlDdv~~~-------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-------~~~~~~~~~l~~l~~~ea~~ 137 (505)
+.+++|++|++..- ...+...++......+. -++|-+|.....-+ .......+.+++++.+++.+
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~-l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~ 357 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE-LRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIR 357 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC-eEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHH
Confidence 46899999998542 11222334444444443 34444444322111 11345689999999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 138 VFQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 138 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
++....-.-.....-.-.+++...+++.+.++.
T Consensus 358 iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 358 MLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 975443111110011123566777777776554
No 168
>PRK12377 putative replication protein; Provisional
Probab=96.57 E-value=0.003 Score=57.84 Aligned_cols=93 Identities=20% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||.||..+++ ........++++++. +++..+-..... ..... .+.+.+ .+--|||+||
T Consensus 110 ~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~----~~l~~l-~~~dLLiIDD 171 (248)
T PRK12377 110 PGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGE----KFLQEL-CKVDLLVLDE 171 (248)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHH----HHHHHh-cCCCEEEEcC
Confidence 69999999999999 555554456677653 334443333321 00111 122223 3456999999
Q ss_pred CCCCCccChh--HHHHhhcCC-CCCcEEEEEeCc
Q 046115 82 VWNEDYYKWE--PFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~--~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
+.......|. .+...+... .....+||||.-
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9554433343 333333332 233458888874
No 169
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.56 E-value=0.0092 Score=54.88 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=64.7
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcCCCCCcE-EEEEeCchHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCC
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKNSLHESK-ILITTRKETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTIGKR 152 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~-iLiTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~ 152 (505)
-.||||+++......|..+...+.+.....+ ||||+--..+-.. ...-.-+..+++..++.+.-++..+..++..
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--- 207 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--- 207 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC---
Confidence 5789999999888899999999998766555 5555544332221 1223467788999999988888877544432
Q ss_pred chHHHHHHHHHHHcCCCh
Q 046115 153 ENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 153 ~~~~~~~~~i~~~~~g~P 170 (505)
-.+++.+.|++.++|.-
T Consensus 208 -~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 208 -IDDDALKLIAKISDGDL 224 (346)
T ss_pred -CCHHHHHHHHHHcCCcH
Confidence 23567888999888854
No 170
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.52 E-value=0.086 Score=50.22 Aligned_cols=136 Identities=16% Similarity=0.205 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-CCChhc-----HHHHHHHHHH--Hc--C
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS-AKDLVE-----FQSLMQHIEE--CV--A 71 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~-----~~~~~~~l~~--~l--~ 71 (505)
+|.|||.+.+++.+. . =...+|+++.+.++...++..|+.+....+ +..... .-.....+.+ .. +
T Consensus 39 sgTGKT~~~r~~l~~--~---n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~ 113 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRK--L---NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNR 113 (438)
T ss_pred CCCchhHHHHHHHhh--c---CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc
Confidence 699999999999983 3 224689999999999999999999995222 221111 1122222333 12 2
Q ss_pred CceEEEEEeCCCCCCccC---hhHHHHhhcCCCCCcEEEEEeCchHHHHH---hCC--cceEeCCCCChhhHHHHHHHh
Q 046115 72 GKKFLLVLDDVWNEDYYK---WEPFYKCLKNSLHESKILITTRKETVARI---MGS--THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~---~~~~~~~~~~~~~~~~iLiTtr~~~~~~~---~~~--~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
++.++||+||++.-.+.. +..+.+...-.....-+|+++...-.... .+. ..++..+.-+.+|..+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 468999999996543211 22222222222223445666654322222 222 235557888999999888764
No 171
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.42 E-value=0.0072 Score=57.45 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+|||.||..+++ +...+-..+.++.+. .++..+-.....+ ...+. .+.++ +-=||||||
T Consensus 165 ~G~GKThLa~Aia~--~l~~~g~~v~~~~~~------~l~~~lk~~~~~~------~~~~~----l~~l~-~~dlLiIDD 225 (306)
T PRK08939 165 FGVGKSYLLAAIAN--ELAKKGVSSTLLHFP------EFIRELKNSISDG------SVKEK----IDAVK-EAPVLMLDD 225 (306)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCCEEEEEHH------HHHHHHHHHHhcC------cHHHH----HHHhc-CCCEEEEec
Confidence 69999999999999 554433345566543 3444444444311 11222 22222 345899999
Q ss_pred CCCCCccChhH--HHHhhcC-C-CCCcEEEEEeCc
Q 046115 82 VWNEDYYKWEP--FYKCLKN-S-LHESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~--~~~~~~~-~-~~~~~iLiTtr~ 112 (505)
+..+....|.. +...+.+ . ..+..+++||.-
T Consensus 226 iG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 226 IGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 98776666653 4454432 2 345678889883
No 172
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.0052 Score=58.91 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+|||.||..+++ +...+-..++++++.. ++..+...-. .. ..+.... .+.+.+ -=|||+||
T Consensus 192 ~GtGKThLa~aIa~--~l~~~g~~V~y~t~~~------l~~~l~~~~~-~~---~~~~~~~----~~~l~~-~DLLIIDD 254 (329)
T PRK06835 192 TGTGKTFLSNCIAK--ELLDRGKSVIYRTADE------LIEILREIRF-NN---DKELEEV----YDLLIN-CDLLIIDD 254 (329)
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEEHHH------HHHHHHHHHh-cc---chhHHHH----HHHhcc-CCEEEEec
Confidence 69999999999998 5544444566776432 2332222111 00 1111111 122222 23899999
Q ss_pred CCCCCccCh--hHHHHhhcCC-CCCcEEEEEeCc
Q 046115 82 VWNEDYYKW--EPFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~--~~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
+..+....| ..+...+... ..+..+||||.-
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 966543333 3344433332 234568888884
No 173
>PRK06921 hypothetical protein; Provisional
Probab=96.41 E-value=0.015 Score=54.13 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHhcCcccccC-CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 2 GGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.|+|||.||..+++ +...+ ...+++++.. +++..+...+ +.. ....+.+. .-=|||+|
T Consensus 126 ~G~GKThLa~aia~--~l~~~~g~~v~y~~~~------~l~~~l~~~~-----------~~~-~~~~~~~~-~~dlLiID 184 (266)
T PRK06921 126 PGSGKTHLLTAAAN--ELMRKKGVPVLYFPFV------EGFGDLKDDF-----------DLL-EAKLNRMK-KVEVLFID 184 (266)
T ss_pred CCCcHHHHHHHHHH--HHhhhcCceEEEEEHH------HHHHHHHHHH-----------HHH-HHHHHHhc-CCCEEEEe
Confidence 69999999999998 55544 4456677742 2223322211 111 11122232 34599999
Q ss_pred CCCC-----CCccChh--HHHHhhcCC-CCCcEEEEEeCc
Q 046115 81 DVWN-----EDYYKWE--PFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 81 dv~~-----~~~~~~~--~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
|+.. +....|. .+...+... ..+..+||||..
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9932 3222333 244433332 234568888874
No 174
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.0062 Score=52.51 Aligned_cols=80 Identities=29% Similarity=0.285 Sum_probs=35.6
Q ss_pred cCcccceEEecccccCCccccccccCcccc-CCCCcceeeccCCccccc---cchhhhcCCCCcEEecCCCcCccccchh
Q 046115 381 KLTCLRALELQVRESWPRNNLIKEIPTNIE-KLLHLKYLNLKGQKKIEK---LPETLCELYNLERLNVDDCQNLRELPRG 456 (505)
Q Consensus 381 ~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 456 (505)
.+..|..|.|. ++.+..+.+.+. .+++|..|.|.+|. +.+ +-+ +..|+.|+.|.+-+|+ ....+.+
T Consensus 62 ~l~rL~tLll~-------nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p-La~~p~L~~Ltll~Np-v~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLN-------NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP-LASCPKLEYLTLLGNP-VEHKKNY 131 (233)
T ss_pred CccccceEEec-------CCcceeeccchhhhccccceEEecCcc-hhhhhhcch-hccCCccceeeecCCc-hhcccCc
Confidence 34445555554 444444433333 23445555555544 222 222 3344455555555544 3333322
Q ss_pred ----ccccccCceeecCC
Q 046115 457 ----IGKLRKLMYLHNED 470 (505)
Q Consensus 457 ----~~~l~~L~~L~l~~ 470 (505)
+..+|+|++|++..
T Consensus 132 R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeEEEEecCcceEeehhh
Confidence 44555555555443
No 175
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.39 E-value=0.021 Score=56.93 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ +....| +.+..+. +..... + .........+.......+.+|+||
T Consensus 225 PPGTGKT~LAraIA~--el~~~f---i~V~~se----------L~~k~~-G-----e~~~~vr~lF~~A~~~~P~ILfID 283 (438)
T PTZ00361 225 PPGTGKTLLAKAVAN--ETSATF---LRVVGSE----------LIQKYL-G-----DGPKLVRELFRVAEENAPSIVFID 283 (438)
T ss_pred CCCCCHHHHHHHHHH--hhCCCE---EEEecch----------hhhhhc-c-----hHHHHHHHHHHHHHhCCCcEEeHH
Confidence 479999999999998 554443 1222111 111111 0 001111222222234567899999
Q ss_pred CCCCCC------c--------cChhHHHHhhcC--CCCCcEEEEEeCchHHHHH-h---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED------Y--------YKWEPFYKCLKN--SLHESKILITTRKETVARI-M---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~------~--------~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++... . ..+..++..+.. ...+..||.||...+.... + +. ...+.++..+.++..++|
T Consensus 284 EID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il 363 (438)
T PTZ00361 284 EIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIF 363 (438)
T ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHH
Confidence 973210 0 001122222222 1345678888876544332 1 11 457889999999999999
Q ss_pred HHhh
Q 046115 140 QSLA 143 (505)
Q Consensus 140 ~~~~ 143 (505)
..+.
T Consensus 364 ~~~~ 367 (438)
T PTZ00361 364 EIHT 367 (438)
T ss_pred HHHH
Confidence 8765
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.36 E-value=0.024 Score=48.55 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=40.1
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-H-HHHhCCcceEeCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-V-ARIMGSTHVISVNVL 130 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~-~~~~~~~~~~~l~~l 130 (505)
+++=++|+||++.........+++.+......+.++++|++.. + .+.......+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 3567899999988887788899999999888899998888754 2 222233445555554
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.36 E-value=0.009 Score=58.94 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc--CCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV--AGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~Llv 78 (505)
++|+|||++|+++++.......|+.+.||.+++..+..+.+... .+....-....+-..+.+.+.. .+++++||
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vli 277 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFI 277 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCCCCCeEecCchHHHHHHHHHhcccCCcEEE
Confidence 68999999999999843233456777799999887765554322 1111110000111112222222 24689999
Q ss_pred EeCCCCCCc
Q 046115 79 LDDVWNEDY 87 (505)
Q Consensus 79 lDdv~~~~~ 87 (505)
+|++.....
T Consensus 278 IDEINRani 286 (459)
T PRK11331 278 IDEINRANL 286 (459)
T ss_pred EehhhccCH
Confidence 999966543
No 178
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.29 E-value=0.089 Score=49.07 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRI 40 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 40 (505)
.+|+|||+||+.++. .... ..+.+++....+..++
T Consensus 29 ~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 29 PAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred CCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 479999999999987 3322 2345566555444443
No 179
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.078 Score=51.10 Aligned_cols=89 Identities=12% Similarity=0.174 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+++.+....+++.+|.+|.+ ..+... ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34568889999888777788899999887777766666655 333332 2335688999999999999887642 1
Q ss_pred CCCchHHHHHHHHHHHcCCChHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
. + ...++..++|.|..
T Consensus 206 --~-~----~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 206 --A-D----ADALLAEAGGAPLA 221 (342)
T ss_pred --C-h----HHHHHHHcCCCHHH
Confidence 1 1 12356788999964
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.045 Score=52.54 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHHh-CCcceEeCCCCChhhHHHHHHH
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARIM-GSTHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~~-~~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
++-++|+|++...+......+.+.+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 334445688877666666777777766555666777777643 33322 2245788999999999888865
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.24 E-value=0.021 Score=48.27 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceE--EEEeCCCCCHHHHHHHHH--H--HcCCCC----CCChhc---HHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRT--WVCVSEPFDEFRIARAII--E--SLTPGS----AKDLVE---FQSLMQHIE 67 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~--wv~~~~~~~~~~~~~~l~--~--~l~~~~----~~~~~~---~~~~~~~l~ 67 (505)
.|.||||+|...+- +..+ .+...+ |+...........+..+- . +++.+. .....+ ..+..+...
T Consensus 11 ~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a~ 88 (159)
T cd00561 11 NGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGWAFAK 88 (159)
T ss_pred CCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 59999999977766 3333 333222 454443344444444431 0 001110 111111 112333344
Q ss_pred HHcCC-ceEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 68 ECVAG-KKFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 68 ~~l~~-~r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
+.+.. .-=|+|||.+-. -.....+.+.+.+.....+..+++|.|+.
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44433 456999999833 23345667777777777788999999983
No 182
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.22 E-value=0.0064 Score=53.35 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHhcCcccccC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN 22 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~ 22 (505)
.+|+|||+|.++++. .....
T Consensus 32 ~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHhc
Confidence 479999999999988 55544
No 183
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.22 E-value=0.012 Score=53.59 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFR 39 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 39 (505)
.+|+|||++|.+++. .....-..++|++.. ..+...
T Consensus 31 ~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 31 PPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHH
Confidence 479999999999987 444445678899987 444433
No 184
>PRK09183 transposase/IS protein; Provisional
Probab=96.20 E-value=0.008 Score=55.82 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||..++. .....-..+.+++.. ++...+...... .... ..+...+ ...-++|+|
T Consensus 110 p~GtGKThLa~al~~--~a~~~G~~v~~~~~~------~l~~~l~~a~~~------~~~~---~~~~~~~-~~~dlLiiD 171 (259)
T PRK09183 110 PSGVGKTHLAIALGY--EAVRAGIKVRFTTAA------DLLLQLSTAQRQ------GRYK---TTLQRGV-MAPRLLIID 171 (259)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEEeHH------HHHHHHHHHHHC------CcHH---HHHHHHh-cCCCEEEEc
Confidence 479999999999987 332222234455422 233332222110 0111 1222222 344699999
Q ss_pred CCCCCCccChh--HHHHhhcCC-CCCcEEEEEeCc
Q 046115 81 DVWNEDYYKWE--PFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~--~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
|+.-....... .+...+... ..+ .+||||..
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 99653222222 344444332 233 48888885
No 185
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.20 E-value=0.023 Score=57.63 Aligned_cols=130 Identities=14% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-----CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCce
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-----EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKK 74 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r 74 (505)
++|+|||++|+.+++ +....+ ....|+++..+ +++.... ...........+..+... .+++
T Consensus 224 PPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~~--------eLl~kyv---Gete~~ir~iF~~Ar~~a~~g~p 290 (512)
T TIGR03689 224 PPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKGP--------ELLNKYV---GETERQIRLIFQRAREKASDGRP 290 (512)
T ss_pred CCCCcHHHHHHHHHH--hhccccccccCCceeEEeccch--------hhccccc---chHHHHHHHHHHHHHHHhhcCCC
Confidence 589999999999998 444332 23445554431 1111111 000111112222222222 3468
Q ss_pred EEEEEeCCCCCC-------ccC-----hhHHHHhhcCC--CCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhH
Q 046115 75 FLLVLDDVWNED-------YYK-----WEPFYKCLKNS--LHESKILITTRKETVAR-IM---GS-THVISVNVLSEMEC 135 (505)
Q Consensus 75 ~LlvlDdv~~~~-------~~~-----~~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea 135 (505)
++|+||+++... ... +..+...+... ..+..||.||...+... .+ +. ...+.++..+.++.
T Consensus 291 ~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 291 VIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred ceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHH
Confidence 999999995421 001 12333333322 13445666666544322 22 12 34689999999999
Q ss_pred HHHHHHhh
Q 046115 136 WSVFQSLA 143 (505)
Q Consensus 136 ~~Lf~~~~ 143 (505)
.++|..+.
T Consensus 371 ~~Il~~~l 378 (512)
T TIGR03689 371 ADIFSKYL 378 (512)
T ss_pred HHHHHHHh
Confidence 99998875
No 186
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.18 E-value=0.041 Score=59.32 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHhcCcccccC-----C-CceEE-EEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-----F-EKRTW-VCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-----f-~~~~w-v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 72 (505)
.+|+|||++|+.++. ++... + +..+| ++.+ .++.. .. ...+.++....+.+.+ ..
T Consensus 211 ~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~~----------~l~a~----~~-~~g~~e~~l~~i~~~~~~~ 273 (731)
T TIGR02639 211 EPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDMG----------SLLAG----TK-YRGDFEERLKAVVSEIEKE 273 (731)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecHH----------HHhhh----cc-ccchHHHHHHHHHHHHhcc
Confidence 479999999999998 44221 1 22232 2311 11110 00 1112333333333333 34
Q ss_pred ceEEEEEeCCCCCC--------ccChhHHHHhhcCCCCCcEEEEEeCchHH------HHH-hCCcceEeCCCCChhhHHH
Q 046115 73 KKFLLVLDDVWNED--------YYKWEPFYKCLKNSLHESKILITTRKETV------ARI-MGSTHVISVNVLSEMECWS 137 (505)
Q Consensus 73 ~r~LlvlDdv~~~~--------~~~~~~~~~~~~~~~~~~~iLiTtr~~~~------~~~-~~~~~~~~l~~l~~~ea~~ 137 (505)
++.+|++|++..-. ......++......+. -++|-+|...+. ... ......+.++.++.++..+
T Consensus 274 ~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~-i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~ 352 (731)
T TIGR02639 274 PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK-LRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVK 352 (731)
T ss_pred CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-eEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHH
Confidence 57899999985321 1122334444443333 334444433221 111 1235688999999999999
Q ss_pred HHHHhh
Q 046115 138 VFQSLA 143 (505)
Q Consensus 138 Lf~~~~ 143 (505)
+++...
T Consensus 353 il~~~~ 358 (731)
T TIGR02639 353 ILKGLK 358 (731)
T ss_pred HHHHHH
Confidence 998654
No 187
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.18 E-value=0.021 Score=55.01 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHhcCcccccCC-Cc-eEEEEeCC-CCCHHHHHHHHHHHcCCCCCCChhcH----H-HHHHHHHHHc-CC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EK-RTWVCVSE-PFDEFRIARAIIESLTPGSAKDLVEF----Q-SLMQHIEECV-AG 72 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~-~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~----~-~~~~~l~~~l-~~ 72 (505)
+|+|||||++.+++ .+..+. +. ++|+-+++ ..+..++.+.+...+.....+..... . ...+...... .+
T Consensus 142 pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~G 219 (380)
T PRK12608 142 PRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQG 219 (380)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 79999999999988 554443 43 35666655 45777888888887764332222111 1 1112222221 57
Q ss_pred ceEEEEEeCCCC
Q 046115 73 KKFLLVLDDVWN 84 (505)
Q Consensus 73 ~r~LlvlDdv~~ 84 (505)
++++||+|++..
T Consensus 220 kdVVLvlDsltr 231 (380)
T PRK12608 220 KDVVILLDSLTR 231 (380)
T ss_pred CCEEEEEeCcHH
Confidence 899999999943
No 188
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.18 E-value=0.075 Score=52.54 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ .....| +.+.. ..+..... + .......+.+.......+.+|++|
T Consensus 187 ppGTGKT~LAkalA~--~l~~~f-----i~i~~--------s~l~~k~~-g-----e~~~~lr~lf~~A~~~~P~ILfID 245 (398)
T PTZ00454 187 PPGTGKTMLAKAVAH--HTTATF-----IRVVG--------SEFVQKYL-G-----EGPRMVRDVFRLARENAPSIIFID 245 (398)
T ss_pred CCCCCHHHHHHHHHH--hcCCCE-----EEEeh--------HHHHHHhc-c-----hhHHHHHHHHHHHHhcCCeEEEEE
Confidence 479999999999998 443332 22211 11111111 0 001111222223334568999999
Q ss_pred CCCCCC----------ccC----hhHHHHhhcC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED----------YYK----WEPFYKCLKN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~----------~~~----~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++... ... +..+...+.. ...+..||.||...+... .+ +. ...+.++..+.++..++|
T Consensus 246 EID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il 325 (398)
T PTZ00454 246 EVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 325 (398)
T ss_pred CHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHH
Confidence 975310 001 1222332322 124567888887654322 11 11 456888888888888888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+.+...-.. ....+ ...+++.+.|+.
T Consensus 326 ~~~~~~~~l-~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 326 QTITSKMNL-SEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred HHHHhcCCC-CcccC----HHHHHHHcCCCC
Confidence 866532221 22223 345666665553
No 189
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.39 Score=47.16 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCC--ceEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAG--KKFLL 77 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~Ll 77 (505)
+|.|||.+...++.+ ..... ..++.+++..-....+++..|...+.......... .+....+..+... +-+++
T Consensus 184 PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~ll 260 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLL 260 (529)
T ss_pred CCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEE
Confidence 699999999988873 33333 24578888776777777887777762111111111 2333444444433 46899
Q ss_pred EEeCCCCCCccChhHHHHhhcCC-CCCcE-EEEEeCch------HHHHH---h-CCcceEeCCCCChhhHHHHHHHhhhC
Q 046115 78 VLDDVWNEDYYKWEPFYKCLKNS-LHESK-ILITTRKE------TVARI---M-GSTHVISVNVLSEMECWSVFQSLAIS 145 (505)
Q Consensus 78 vlDdv~~~~~~~~~~~~~~~~~~-~~~~~-iLiTtr~~------~~~~~---~-~~~~~~~l~~l~~~ea~~Lf~~~~~~ 145 (505)
|+|..+.-....-..+...+.|. -++++ |||---+. .+... . -....+..++.+.++.+++|....-.
T Consensus 261 VlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 261 VLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred EechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 99998542211222222222222 23344 44432221 11111 1 12447778899999999999877532
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 146 GKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
... ......++.-++++|.|..
T Consensus 341 ~~t---~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 341 EST---SIFLNAAIELCARKVAAPS 362 (529)
T ss_pred ccc---cccchHHHHHHHHHhccCc
Confidence 222 2222334455555554444
No 190
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0045 Score=55.58 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCC--cCccccchhccccccCceeecCCCccccccccc---ccCC
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDC--QNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG---IGEL 484 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~---i~~l 484 (505)
-.+..|+.|++.++. ++.+-. +-.|++|+.|.++.| +....++....++|+|+++++++|... .++. +..+
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhh
Confidence 345566666677666 444433 446789999999999 655567766777799999999999843 2333 4566
Q ss_pred ccCCccceeEecCcC
Q 046115 485 IRLRRVREFVVGGGY 499 (505)
Q Consensus 485 ~~L~~L~~~~~~~~~ 499 (505)
.+|..|.++.|+.-+
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 777788877776543
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=95.94 E-value=0.13 Score=54.15 Aligned_cols=142 Identities=14% Similarity=0.200 Sum_probs=75.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.++. +... -|+.++.. ++ ..... + .........+.......+++|++|
T Consensus 224 PpGTGKT~LAralA~--e~~~-----p~i~is~s----~f----~~~~~-g-----~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 224 PPGTGKTLLAKAIAG--EAEV-----PFFSISGS----EF----VEMFV-G-----VGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred CCCCCHHHHHHHHHH--HhCC-----CeeeccHH----HH----HHHhh-h-----hhHHHHHHHHHHHhcCCCcEEEEe
Confidence 489999999999998 3322 23333211 11 11110 0 011222333444455678999999
Q ss_pred CCCCCC----------ccC----hhHHHHhhcC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED----------YYK----WEPFYKCLKN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~----------~~~----~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.-. ... +..++..+.. ...+..|+.||...+... .+ +. ...+.++..+.++-.+++
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 994321 011 2223322222 234556777776654322 11 11 357788888999988888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCC
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKG 168 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 168 (505)
..+...... ........+++.+.|
T Consensus 363 ~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 363 KVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred HHHHhhccc-----chhHHHHHHHhcCCC
Confidence 877643111 112345677888877
No 192
>PRK06526 transposase; Provisional
Probab=95.93 E-value=0.015 Score=53.61 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||..++. +....-..+.|++. .+++..+..... . .... ..+. .+ .+.-+||+|
T Consensus 106 p~GtGKThLa~al~~--~a~~~g~~v~f~t~------~~l~~~l~~~~~----~--~~~~---~~l~-~l-~~~dlLIID 166 (254)
T PRK06526 106 PPGTGKTHLAIGLGI--RACQAGHRVLFATA------AQWVARLAAAHH----A--GRLQ---AELV-KL-GRYPLLIVD 166 (254)
T ss_pred CCCCchHHHHHHHHH--HHHHCCCchhhhhH------HHHHHHHHHHHh----c--CcHH---HHHH-Hh-ccCCEEEEc
Confidence 479999999999987 33322223334322 233333332211 0 0111 1222 22 234589999
Q ss_pred CCCCCCccCh--hHHHHhhcCCCCCcEEEEEeCch
Q 046115 81 DVWNEDYYKW--EPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 81 dv~~~~~~~~--~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
|+.......+ ..+...+........+|+||..+
T Consensus 167 D~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 167 EVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 9965422122 22333333222223488888854
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.92 E-value=0.034 Score=47.39 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFD 36 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~ 36 (505)
.+|+|||++|..++. ....+-..++|++......
T Consensus 7 ~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 7 PTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 379999999999988 4444435677888766543
No 194
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.92 E-value=0.0049 Score=57.56 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCCceEEEecCCCcccc-ccchhHHhhcCcccceEEecccccCCccccccccC--------------ccccCCCCccee
Q 046115 354 GLRGLRSLLVKSDEYSWS-SEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP--------------TNIEKLLHLKYL 418 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p--------------~~~~~l~~L~~L 418 (505)
+++.|+.|+|+.|-+..- ...+...+.++..|+.|.|. |+.++... ..+..-+.|+++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-------N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-------NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-------cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 566777777777765321 11133345566667777776 33332211 113344566666
Q ss_pred eccCCccccccc-----hhhhcCCCCcEEecCCCcCcc----ccchhccccccCceeecCCCc
Q 046115 419 NLKGQKKIEKLP-----ETLCELYNLERLNVDDCQNLR----ELPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 419 ~l~~~~~~~~lp-----~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~ 472 (505)
...+|+ +..-+ ..+...+.|+.+.+..|.+-. .+-.++..++.|+.|++..|.
T Consensus 163 i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 163 ICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred Eeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 666666 43333 223444555665555544111 111234555566666666554
No 195
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.85 E-value=0.067 Score=58.49 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCCCcHHHHHHHHhcCccccc-----CC-CceEE-EEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER-----NF-EKRTW-VCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~-----~f-~~~~w-v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 72 (505)
.+|+|||++|+.++. ++.. .. +..+| ++.+ .++. +.. ...+.++....+.+.+ ..
T Consensus 208 ~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~l~~~----------~l~a----g~~-~~ge~e~rl~~i~~~~~~~ 270 (821)
T CHL00095 208 EPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVITLDIG----------LLLA----GTK-YRGEFEERLKRIFDEIQEN 270 (821)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeHH----------HHhc----cCC-CccHHHHHHHHHHHHHHhc
Confidence 489999999999988 4421 11 23333 2211 1111 111 1122333333333332 34
Q ss_pred ceEEEEEeCCCC-------CCccChhHHHHhhcCCCCCcEEEEEeCchHHHH------H-hCCcceEeCCCCChhhHHHH
Q 046115 73 KKFLLVLDDVWN-------EDYYKWEPFYKCLKNSLHESKILITTRKETVAR------I-MGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 73 ~r~LlvlDdv~~-------~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~------~-~~~~~~~~l~~l~~~ea~~L 138 (505)
++.+|++|++.. ........++......+.=..|-.||.++ ... . ......+.+...+.++...+
T Consensus 271 ~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~e-y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aI 349 (821)
T CHL00095 271 NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDE-YRKHIEKDPALERRFQPVYVGEPSVEETIEI 349 (821)
T ss_pred CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHH-HHHHHhcCHHHHhcceEEecCCCCHHHHHHH
Confidence 689999999842 11113344555444444433344444433 211 1 12345778888999998888
Q ss_pred HHHh
Q 046115 139 FQSL 142 (505)
Q Consensus 139 f~~~ 142 (505)
+...
T Consensus 350 Lr~l 353 (821)
T CHL00095 350 LFGL 353 (821)
T ss_pred HHHH
Confidence 7643
No 196
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.80 E-value=0.023 Score=51.06 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRI 40 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 40 (505)
.+|+|||++|.+++. ...+.-..++|++... ++...+
T Consensus 20 ~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl 56 (209)
T TIGR02237 20 PPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERF 56 (209)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHH
Confidence 479999999999887 4444456788999876 544433
No 197
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.76 E-value=0.033 Score=51.07 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN----FEKRTWVCVSEPFDEFRIARAIIES 47 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~l~~~ 47 (505)
.+|+|||+||.+++........ -..++|++....++...+ .+++..
T Consensus 27 ~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 27 EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 3799999999999752122221 257889998877665433 333443
No 198
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.70 E-value=0.16 Score=52.24 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.++. +.... ++.++.. + +..... + .........+.......+.+|++|
T Consensus 96 ppGtGKT~la~alA~--~~~~~-----~~~i~~~----~----~~~~~~-g-----~~~~~l~~~f~~a~~~~p~Il~iD 154 (495)
T TIGR01241 96 PPGTGKTLLAKAVAG--EAGVP-----FFSISGS----D----FVEMFV-G-----VGASRVRDLFEQAKKNAPCIIFID 154 (495)
T ss_pred CCCCCHHHHHHHHHH--HcCCC-----eeeccHH----H----HHHHHh-c-----ccHHHHHHHHHHHHhcCCCEEEEe
Confidence 589999999999998 33222 2222211 1 111111 0 011122223333334567899999
Q ss_pred CCCCCC----------ccC----hhHHHHhhcC--CCCCcEEEEEeCchHH-HHHh---C-CcceEeCCCCChhhHHHHH
Q 046115 81 DVWNED----------YYK----WEPFYKCLKN--SLHESKILITTRKETV-ARIM---G-STHVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~----------~~~----~~~~~~~~~~--~~~~~~iLiTtr~~~~-~~~~---~-~~~~~~l~~l~~~ea~~Lf 139 (505)
+++.-. ... ...+...+.. ...+..||.||..+.. ...+ + -...+.++..+.++-.+++
T Consensus 155 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il 234 (495)
T TIGR01241 155 EIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEIL 234 (495)
T ss_pred chhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHH
Confidence 984411 001 1122222221 2234556667766432 2211 1 1457888888888888888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGL-PLAAKTI 176 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 176 (505)
..+...... ... .....+++.+.|+ +-.|..+
T Consensus 235 ~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 235 KVHAKNKKL-APD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHH
Confidence 776532211 111 2245777788764 3444443
No 199
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0014 Score=59.22 Aligned_cols=99 Identities=26% Similarity=0.266 Sum_probs=67.0
Q ss_pred CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccch--hh
Q 046115 356 RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPE--TL 433 (505)
Q Consensus 356 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~ 433 (505)
.+.+-|+.-|+.++.. . .+.+|+.|++|.|+ -|.+..+.+ +..+++|+.|.|+.|. +..+-. .+
T Consensus 19 ~~vkKLNcwg~~L~DI----s-ic~kMp~lEVLsLS-------vNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI----S-ICEKMPLLEVLSLS-------VNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYL 84 (388)
T ss_pred HHhhhhcccCCCccHH----H-HHHhcccceeEEee-------ccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 3444455555554432 2 25678888888888 555666544 6788888888888888 555543 35
Q ss_pred hcCCCCcEEecCCCcCccccchh-----ccccccCceeec
Q 046115 434 CELYNLERLNVDDCQNLRELPRG-----IGKLRKLMYLHN 468 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~-----~~~l~~L~~L~l 468 (505)
.++++|+.|.|..|+....-+.. +..||+|+.|+-
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 68888999999888866655542 567788888773
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.071 Score=53.82 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
.++--..|+|.|.-.....+..+++-+.........|..|.+ ..+.. .....+.|.+..++.++-...+...+...+.
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI 196 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC
Confidence 345568899999777767788888888876665655555544 33322 2344568899999999998888887754433
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
...++++..|++..+|...
T Consensus 197 ----~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 197 ----NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred ----ccCHHHHHHHHHHcCCChh
Confidence 2335667778888887543
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.047 Score=52.75 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC---------------------CCceEEEEeCCCCC---HHHHHHHHHHHcCCCCCCCh
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN---------------------FEKRTWVCVSEPFD---EFRIARAIIESLTPGSAKDL 56 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~---------------------f~~~~wv~~~~~~~---~~~~~~~l~~~l~~~~~~~~ 56 (505)
++|+||||+|.++++. +... ...+..++.+.... ..+..+++.+.......
T Consensus 32 p~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~--- 106 (325)
T COG0470 32 PPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL--- 106 (325)
T ss_pred CCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC---
Confidence 4699999999999883 3221 23444444443333 23333333333321111
Q ss_pred hcHHHHHHHHHHHcCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhh
Q 046115 57 VEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEME 134 (505)
Q Consensus 57 ~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~e 134 (505)
.++.-++++|+++.........+...+......+.++++|..+ .+...+ .....+.+.+.+..+
T Consensus 107 --------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 107 --------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred --------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 3567799999998776656677777777777778888888753 222212 223456666633333
No 202
>PTZ00202 tuzin; Provisional
Probab=95.52 E-value=0.44 Score=46.98 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcH-HHHHHHHHHHc-C-CceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEF-QSLMQHIEECV-A-GKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~l-~-~~r~Ll 77 (505)
++|+|||||++.+... .. ...++++.. +..+++..++.+|+.+......+. ....+.+.+.- . +++.+|
T Consensus 294 ~~G~GKTTLlR~~~~~--l~---~~qL~vNpr---g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVL 365 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRK--EG---MPAVFVDVR---GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLL 365 (550)
T ss_pred CCCCCHHHHHHHHHhc--CC---ceEEEECCC---CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4799999999999973 22 123344444 679999999999996333222222 33333333332 2 566666
Q ss_pred EEeCCCCCCcc-ChhHHHHhhcCCCCCcEEEEEeCchHHHH---HhCCcceEeCCCCChhhHHHHHHHh
Q 046115 78 VLDDVWNEDYY-KWEPFYKCLKNSLHESKILITTRKETVAR---IMGSTHVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 78 vlDdv~~~~~~-~~~~~~~~~~~~~~~~~iLiTtr~~~~~~---~~~~~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
|+-==.-.+.. .+.... .+--...-|+|++----+.+.. ..+....|.++.|+.++|..+-+..
T Consensus 366 II~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 366 VLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred EEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 65321111100 011111 1111234577776433322211 1234568899999999998877654
No 203
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.16 Score=48.13 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=81.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC-CceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA-GKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~Llvl 79 (505)
++|.|||-||+++++ +....| +.+.. .+++++.-. +-.+.+..+.+.-+ ..+..|.+
T Consensus 193 PPGTGKTLLAkAVA~--~T~AtF-----Irvvg--------SElVqKYiG-------EGaRlVRelF~lArekaPsIIFi 250 (406)
T COG1222 193 PPGTGKTLLAKAVAN--QTDATF-----IRVVG--------SELVQKYIG-------EGARLVRELFELAREKAPSIIFI 250 (406)
T ss_pred CCCCcHHHHHHHHHh--ccCceE-----EEecc--------HHHHHHHhc-------cchHHHHHHHHHHhhcCCeEEEE
Confidence 589999999999999 555555 44333 223332220 01122333333333 35789999
Q ss_pred eCCCC--------------CCccChhHHHHhhcCCC--CCcEEEEEeCchHHHHHh----CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWN--------------EDYYKWEPFYKCLKNSL--HESKILITTRKETVARIM----GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~--------------~~~~~~~~~~~~~~~~~--~~~~iLiTtr~~~~~~~~----~~-~~~~~l~~l~~~ea~~L 138 (505)
|.++. +-+-.+-+++..+.-|+ ...+||..|...+++... +. .+.++++.-+.+--.++
T Consensus 251 DEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~I 330 (406)
T COG1222 251 DEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEI 330 (406)
T ss_pred echhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHH
Confidence 98833 11112344555555443 467888888766554321 22 45778875555555666
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh----HHHHHHHHHh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP----LAAKTIASLL 180 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal~~~~~~l 180 (505)
|.-++-. -.....-+. ..+++.|.|.. -|+.+=|+++
T Consensus 331 l~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 331 LKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred HHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHH
Confidence 6655422 222333343 35666666654 3444445543
No 204
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.47 E-value=0.13 Score=56.52 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCCC-------ccChhHHHHhhcCCCCCcEEEEEeCchH---H--HH-HhCCcceEeCCCCChhhHHHH
Q 046115 72 GKKFLLVLDDVWNED-------YYKWEPFYKCLKNSLHESKILITTRKET---V--AR-IMGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iLiTtr~~~---~--~~-~~~~~~~~~l~~l~~~ea~~L 138 (505)
+++.+|++|++..-. ..+...++......+.=..|-.||.++. + .. .......+.++..+.++...+
T Consensus 265 ~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~i 344 (852)
T TIGR03346 265 EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISI 344 (852)
T ss_pred CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHH
Confidence 468999999985321 0112333443333333333334454432 1 11 112355788999999999998
Q ss_pred HHHh
Q 046115 139 FQSL 142 (505)
Q Consensus 139 f~~~ 142 (505)
+...
T Consensus 345 L~~~ 348 (852)
T TIGR03346 345 LRGL 348 (852)
T ss_pred HHHH
Confidence 8755
No 205
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.44 E-value=0.047 Score=50.56 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHhcCcccccC---C-CceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN---F-EKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||.+++-...+... . ..++||+-...+....+. +|+++..
T Consensus 46 ~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp STTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred ecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3799999999888753233222 2 347799988888876654 4666554
No 206
>PRK04296 thymidine kinase; Provisional
Probab=95.43 E-value=0.025 Score=49.88 Aligned_cols=105 Identities=12% Similarity=-0.013 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-ChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK-DLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.|.||||+|..++. +...+...++.+. ..++.......+..+++..... ......+....+.+ ..++.-+||+|
T Consensus 11 ~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviID 85 (190)
T PRK04296 11 MNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLID 85 (190)
T ss_pred CCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEEE
Confidence 59999999988887 4444433444442 1112222233445555422111 12233444444444 33345689999
Q ss_pred CCCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 81 DVWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
.++--+..++..+...+ ...|..|++|.++.
T Consensus 86 Eaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 86 EAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred ccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 99553322233333333 24577899999874
No 207
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.43 E-value=0.0071 Score=32.20 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.6
Q ss_pred CcEEecCCC
Q 046115 439 LERLNVDDC 447 (505)
Q Consensus 439 L~~L~l~~~ 447 (505)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 334444444
No 208
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.42 E-value=0.039 Score=49.94 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=24.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFD 36 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~ 36 (505)
.+|+||||+|.+++. ....+-..++|++....+.
T Consensus 27 ~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 27 PPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 379999999999987 4444445677887655543
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.13 Score=53.03 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=79.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF--DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.|+|||+||+++++... +..+-++.+++++.-. ..+.+++.+-. ....++.-.+-+|||
T Consensus 440 ~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~------------------vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN------------------VFSEALWYAPSIIVL 500 (952)
T ss_pred CCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH------------------HHHHHHhhCCcEEEE
Confidence 69999999999999322 3445556677776532 22333333222 233456678889999
Q ss_pred eCCCC------CCccCh-------hHH----HHhhcCCCCCcEEEEEeCchHHHHH-h---CC-cceEeCCCCChhhHHH
Q 046115 80 DDVWN------EDYYKW-------EPF----YKCLKNSLHESKILITTRKETVARI-M---GS-THVISVNVLSEMECWS 137 (505)
Q Consensus 80 Ddv~~------~~~~~~-------~~~----~~~~~~~~~~~~iLiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~ 137 (505)
||++- ..-.+| ..+ ...+...+..-.+|.|......... . .. ...+.++.+..++-.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 99832 111111 111 2222223333345556655332211 1 11 3356788888777666
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHH
Q 046115 138 VFQSLAISGKTIGKRENLEKIGREIVKKCKGL-PLAAKTIA 177 (505)
Q Consensus 138 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 177 (505)
+++... .... ... ..+...-+..+|+|+ |..+.+.-
T Consensus 581 IL~~~~-s~~~--~~~-~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 581 ILTTIF-SKNL--SDI-TMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred HHHHHH-Hhhh--hhh-hhHHHHHHHHhcCCccchhHHHHH
Confidence 665532 2121 111 122233488888774 55555443
No 210
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.11 Score=54.30 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=28.6
Q ss_pred ceEeCCCCChhhHHHHHHHhhhCCCCCCCC---chHHHHHHHHHHHcCCCh
Q 046115 123 HVISVNVLSEMECWSVFQSLAISGKTIGKR---ENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 123 ~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~---~~~~~~~~~i~~~~~g~P 170 (505)
..+..++++..+-.+.+............. -..++++..|+..++|--
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 468899999999777776665332111101 112456777777777744
No 211
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.29 E-value=0.1 Score=52.94 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||.+|+.+++ +....| +-++.+. +..... ........+.+...-...+++|++|
T Consensus 267 PpGTGKTllAkaiA~--e~~~~~---~~l~~~~----------l~~~~v------Gese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 267 IQGTGKSLTAKAIAN--DWQLPL---LRLDVGK----------LFGGIV------GESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred CCCCcHHHHHHHHHH--HhCCCE---EEEEhHH----------hccccc------ChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 589999999999998 432222 1222211 111110 0011112222222223468999999
Q ss_pred CCCCCC-------cc-----ChhHHHHhhcCCCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHHHHHhh
Q 046115 81 DVWNED-------YY-----KWEPFYKCLKNSLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 81 dv~~~~-------~~-----~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+++.-- .. ....+...+.....+..|+.||....... .+ +. ...+.++..+.++-.++|..+.
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 985310 00 11223333444445556777887654321 11 22 3467788888999899998776
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
......... ......+++.+.|+.
T Consensus 406 ~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 406 QKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred hhcCCCccc---ccCHHHHHhhcCCCC
Confidence 432211100 112456777776655
No 212
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.27 E-value=0.067 Score=48.66 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCC------CceEEEEeCCCCCHHHHHHHHHHHcCCCC--------CCChhcHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF------EKRTWVCVSEPFDEFRIARAIIESLTPGS--------AKDLVEFQSLMQHI 66 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~l 66 (505)
.+|+|||+||.+++. ...... ..++|++....++...+ ..+........ -....+.++....+
T Consensus 27 ~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 103 (226)
T cd01393 27 EFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIV 103 (226)
T ss_pred CCCCChhHHHHHHHH--HhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHHHHHHHH
Confidence 379999999999886 333333 56789998776665443 33333322110 01112334444444
Q ss_pred HHHc----CCceEEEEEeCCC
Q 046115 67 EECV----AGKKFLLVLDDVW 83 (505)
Q Consensus 67 ~~~l----~~~r~LlvlDdv~ 83 (505)
.... ..+.-++|+|.+.
T Consensus 104 ~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 104 EELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHhhcCCeeEEEEcCcc
Confidence 4333 2345588999974
No 213
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.23 Score=46.64 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=46.8
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHh-CCcceEeCCCCChhhHHHHHH
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIM-GSTHVISVNVLSEMECWSVFQ 140 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~-~~~~~~~l~~l~~~ea~~Lf~ 140 (505)
+++-++|+|+++.........+++.+.....++.+|.+|.++ .+..-+ .....+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 456789999998887777888999999887777777777654 333322 2345667765 6666666664
No 214
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.42 Score=45.28 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc-hHHHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK-ETVARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~-~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..........+.+.+......+.+|++|.+ ..+.+. ......+++.+++.++..+.+....
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~------ 162 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN------ 162 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC------
Confidence 46778889998776655667788888887777777765544 444432 2346689999999999888776531
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.+ ++.+..++...+|.--|+..
T Consensus 163 -~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 -KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -CC---hhHHHHHHHHcCCHHHHHHH
Confidence 11 23355555566653344444
No 215
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.01 Score=31.60 Aligned_cols=21 Identities=29% Similarity=0.801 Sum_probs=15.0
Q ss_pred CcceeeccCCccccccchhhhc
Q 046115 414 HLKYLNLKGQKKIEKLPETLCE 435 (505)
Q Consensus 414 ~L~~L~l~~~~~~~~lp~~~~~ 435 (505)
+|++|++++|. ++.+|..+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47788888886 6677776554
No 216
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.27 Score=49.86 Aligned_cols=147 Identities=18% Similarity=0.299 Sum_probs=82.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||-||+++++ +-.-+| +.+..+ ++++... ..+.....+..++.-..-++.|.||
T Consensus 553 PPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYV------GESErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYV------GESERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred CCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHh------hhHHHHHHHHHHHhhcCCCeEEEec
Confidence 589999999999999 666665 655542 3333332 1122233344444445679999999
Q ss_pred CCCCC-------Ccc----ChhHHHHhhcC--CCCCcEEEEEeCchHHHHH-h---CC-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNE-------DYY----KWEPFYKCLKN--SLHESKILITTRKETVARI-M---GS-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~-------~~~----~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
.++.- ... .+.+++.-+.. ...|..||-.|..+++-.. + +. ....-|+.-+.+|-.++++..
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~ 691 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTI 691 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHH
Confidence 98431 111 12333333332 2346667766666554221 1 11 345667777888888999887
Q ss_pred hhCCCC-CCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKT-IGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~~i~~~~~g~P 170 (505)
....+. ...+-+++++++. .+|.|+.
T Consensus 692 tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 692 TKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred hccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 753221 1333455555542 3566655
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.14 E-value=0.15 Score=54.73 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=42.1
Q ss_pred CceEEEEEeCCCCC--------CccChhHHHHhhcCCCCCcEEEEEeCchHHHH-------HhCCcceEeCCCCChhhHH
Q 046115 72 GKKFLLVLDDVWNE--------DYYKWEPFYKCLKNSLHESKILITTRKETVAR-------IMGSTHVISVNVLSEMECW 136 (505)
Q Consensus 72 ~~r~LlvlDdv~~~--------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-------~~~~~~~~~l~~l~~~ea~ 136 (505)
..+.+|++|++..- ...+...+...+...+. -++|-+|......+ .......+.+++.+.+++.
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~-i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~ 355 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK-IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCC-eEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHH
Confidence 45789999998531 12233444555554443 34444444333211 1134568999999999999
Q ss_pred HHHHHhh
Q 046115 137 SVFQSLA 143 (505)
Q Consensus 137 ~Lf~~~~ 143 (505)
+++....
T Consensus 356 ~IL~~~~ 362 (758)
T PRK11034 356 QIINGLK 362 (758)
T ss_pred HHHHHHH
Confidence 9998653
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.027 Score=52.04 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||.||.++++ ++.+.--.+.++++. +++.+|...... +.....+.+.++ +-=||||||
T Consensus 114 ~G~GKThLa~Ai~~--~l~~~g~sv~f~~~~------el~~~Lk~~~~~---------~~~~~~l~~~l~-~~dlLIiDD 175 (254)
T COG1484 114 PGVGKTHLAIAIGN--ELLKAGISVLFITAP------DLLSKLKAAFDE---------GRLEEKLLRELK-KVDLLIIDD 175 (254)
T ss_pred CCCcHHHHHHHHHH--HHHHcCCeEEEEEHH------HHHHHHHHHHhc---------CchHHHHHHHhh-cCCEEEEec
Confidence 79999999999999 665332345566533 455555544441 111222333222 223899999
Q ss_pred CCCCCccCh
Q 046115 82 VWNEDYYKW 90 (505)
Q Consensus 82 v~~~~~~~~ 90 (505)
+..+....|
T Consensus 176 lG~~~~~~~ 184 (254)
T COG1484 176 IGYEPFSQE 184 (254)
T ss_pred ccCccCCHH
Confidence 976544443
No 219
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.09 E-value=0.074 Score=45.52 Aligned_cols=111 Identities=20% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE--EEEeCCCCCHHHHHHHHHH---HcCCCC----CCCh---hcHHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT--WVCVSEPFDEFRIARAIIE---SLTPGS----AKDL---VEFQSLMQHIEEC 69 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~l~~---~l~~~~----~~~~---~~~~~~~~~l~~~ 69 (505)
.|.||||.|..++-. .....+...+ |+.-.........+..+.- +++.+. .... ....+..+...+.
T Consensus 14 ~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~~~ 92 (173)
T TIGR00708 14 NGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQHAKEM 92 (173)
T ss_pred CCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHHHHHHH
Confidence 589999999777662 2233344322 6655433344444443300 111110 0111 1122334444555
Q ss_pred cCC-ceEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 70 VAG-KKFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 70 l~~-~r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
+.. .-=|+|||.+-. -...+.+.+.+.+.....+..|++|-|+.
T Consensus 93 l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 93 LADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 544 445999999832 22345566777777777788999999984
No 220
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.07 E-value=0.22 Score=53.94 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ +....| +.+.. .+++.... ..............-...+.+|+||
T Consensus 495 ppGtGKT~lakalA~--e~~~~f-----i~v~~--------~~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiD 553 (733)
T TIGR01243 495 PPGTGKTLLAKAVAT--ESGANF-----IAVRG--------PEILSKWV------GESEKAIREIFRKARQAAPAIIFFD 553 (733)
T ss_pred CCCCCHHHHHHHHHH--hcCCCE-----EEEeh--------HHHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 479999999999998 443333 33322 11222111 0111112222223334567999999
Q ss_pred CCCCC--------Cc----cChhHHHHhhcC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHHHHH
Q 046115 81 DVWNE--------DY----YKWEPFYKCLKN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 81 dv~~~--------~~----~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~Lf~~ 141 (505)
+++.- .. ....+++..+.. ...+..||.||..++... .. +. ...+.++..+.++-.++|..
T Consensus 554 Eid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~ 633 (733)
T TIGR01243 554 EIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI 633 (733)
T ss_pred ChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHH
Confidence 98431 00 012233333432 223455666776654322 11 12 45778888888888888876
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 142 LAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+...... ....+ ...+++.+.|+.
T Consensus 634 ~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 634 HTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 5422111 22222 456777777654
No 221
>PRK08118 topology modulation protein; Reviewed
Probab=95.07 E-value=0.0093 Score=51.36 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTW 28 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~w 28 (505)
++|+||||||+.+++...+. -+|+..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999843222 34666766
No 222
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.11 Score=48.24 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCC---CCCCChhcHHHHHHHHHHHcCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTP---GSAKDLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
+.|+||||+|.+++- .....-..++||+....++++.+..-....+.. .......+-.+..+.+.+....+--|+
T Consensus 68 ~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~Lv 145 (279)
T COG0468 68 PESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLL 145 (279)
T ss_pred CCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEE
Confidence 469999999988876 344444478899999988886654433332321 222233333344444444444445689
Q ss_pred EEeCCCC
Q 046115 78 VLDDVWN 84 (505)
Q Consensus 78 vlDdv~~ 84 (505)
|+|.+..
T Consensus 146 VVDSvaa 152 (279)
T COG0468 146 VVDSVAA 152 (279)
T ss_pred EEecCcc
Confidence 9999833
No 223
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.89 E-value=0.1 Score=48.31 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE-EEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT-WVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|.|||+||..+++ .++.+|..++ ++-+++.. +..++..++..
T Consensus 78 ~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 78 AGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 69999999999999 7776775444 55566544 44455555544
No 224
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.88 E-value=0.84 Score=44.04 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHHHc--CCceEEEEEeCCCCCCccChhHHHHhhcCC--CCCcEEEEEeCchHHHH
Q 046115 65 HIEECV--AGKKFLLVLDDVWNEDYYKWEPFYKCLKNS--LHESKILITTRKETVAR 117 (505)
Q Consensus 65 ~l~~~l--~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~ 117 (505)
.+...+ .++|.++++||+++-.......+...+... .+++.+|+..-.+.+..
T Consensus 162 ~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ 218 (325)
T PF07693_consen 162 KIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEK 218 (325)
T ss_pred HHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHH
Confidence 344444 347999999999886554444444443321 25666666655444433
No 225
>PRK10536 hypothetical protein; Provisional
Probab=94.63 E-value=0.1 Score=47.72 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 74 KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 74 r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
.-++|+|.+++-+..++..++. ..+.+|++++|--..
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk~v~~GD~~ 213 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLT---RLGENVTVIVNGDIT 213 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHh---hcCCCCEEEEeCChh
Confidence 4599999998877655555554 445789999886643
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.61 E-value=0.098 Score=57.43 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-CChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA-KDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
++|+|||++|+.++. ...+.-...+.++++...+... ...+ ++.+.. ....+.+.....++ +....+|+|
T Consensus 603 p~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~-~~~l---~g~~~g~~g~~~~g~l~~~v~---~~p~~vlll 673 (852)
T TIGR03346 603 PTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHS-VARL---IGAPPGYVGYEEGGQLTEAVR---RKPYSVVLF 673 (852)
T ss_pred CCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccch-HHHh---cCCCCCccCcccccHHHHHHH---cCCCcEEEE
Confidence 479999999999998 4433333445566554332211 1111 221111 11111122222222 233459999
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|++.......+..+.+.+.... ..+-||.||.-
T Consensus 674 Deieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 674 DEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred eccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 9998776666677777664331 23446777764
No 227
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.58 E-value=0.045 Score=59.66 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-CCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS-AKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
++|+|||.||+.++. ..-+.....+-++++...+.... ..-++.+. .......+.....++ +....+|+|
T Consensus 604 p~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~~~~----~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvll 674 (852)
T TIGR03345 604 PSGVGKTETALALAE--LLYGGEQNLITINMSEFQEAHTV----SRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLL 674 (852)
T ss_pred CCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhhhhh----ccccCCCCCcccccccchHHHHHH---hCCCcEEEE
Confidence 479999999999987 44333333344444432211111 11112111 111111112222222 245679999
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|++.......+..+.+.+.... ..+-||+||.-
T Consensus 675 DEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 675 DEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred echhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 9997666555566666555432 45567777664
No 228
>PRK07261 topology modulation protein; Provisional
Probab=94.57 E-value=0.077 Score=45.86 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||||++++.
T Consensus 8 ~~GsGKSTla~~l~~ 22 (171)
T PRK07261 8 YSGSGKSTLARKLSQ 22 (171)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999986
No 229
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.52 E-value=0.065 Score=46.63 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC 30 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~ 30 (505)
++|+||||+|+.++. .....+..+++++
T Consensus 15 ~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 579999999999998 6666666677664
No 230
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.49 E-value=0.081 Score=57.84 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-CCChhcHHHHHHHHHHHcCC-ceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS-AKDLVEFQSLMQHIEECVAG-KKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~-~r~Llv 78 (505)
+.|+|||+||+.+++ ..-+.-...+-++.++..+.... ..+ ++.+. .....+.+ .+...++. ...+++
T Consensus 547 p~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~-~~l---~g~~~gyvg~~~~~----~l~~~~~~~p~~Vvl 616 (821)
T CHL00095 547 PTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV-SKL---IGSPPGYVGYNEGG----QLTEAVRKKPYTVVL 616 (821)
T ss_pred CCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH-HHh---cCCCCcccCcCccc----hHHHHHHhCCCeEEE
Confidence 479999999999997 44222234445555543322211 111 22111 11111111 23333433 346899
Q ss_pred EeCCCCCCccChhHHHHhhcCC-----------CCCcEEEEEeCc
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNS-----------LHESKILITTRK 112 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~-----------~~~~~iLiTtr~ 112 (505)
||++.......+..+.+.+... ...+-||.||.-
T Consensus 617 lDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 617 FDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred ECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 9999776665666667665542 134556666664
No 231
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.49 E-value=0.13 Score=44.74 Aligned_cols=111 Identities=18% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE--EEEeCCCCCHHHHHHHHH--HH--cCCC----CCCCh---hcHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT--WVCVSEPFDEFRIARAII--ES--LTPG----SAKDL---VEFQSLMQHIEE 68 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~l~--~~--l~~~----~~~~~---~~~~~~~~~l~~ 68 (505)
.|-||||.|...+-. .....+...+ |+.-.........+..+- .. .+.+ ..... ....+..+...+
T Consensus 31 ~GkGKtt~a~g~a~r-a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a~~ 109 (191)
T PRK05986 31 NGKGKSTAAFGMALR-AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEAKR 109 (191)
T ss_pred CCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHHHH
Confidence 589999999777652 2223343322 555443334444444321 11 1111 01111 111223444455
Q ss_pred HcCC-ceEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 69 CVAG-KKFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 69 ~l~~-~r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
.+.. +-=|+|||.+-. ....+.+.+.+.+.....+..|++|-|+.
T Consensus 110 ~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 110 MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 5544 456999999732 23345667777777777788999999983
No 232
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.47 E-value=0.15 Score=43.89 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
+|+|||++|.+++. . ....++++.-.+..+.+
T Consensus 8 ~~sGKS~~a~~~~~--~---~~~~~~y~at~~~~d~e 39 (169)
T cd00544 8 ARSGKSRFAERLAA--E---LGGPVTYIATAEAFDDE 39 (169)
T ss_pred CCCCHHHHHHHHHH--h---cCCCeEEEEccCcCCHH
Confidence 69999999999987 3 22456677666666553
No 233
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.47 E-value=0.11 Score=57.01 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC-CceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA-GKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~Llvl 79 (505)
+.|+|||++|+.+++ ...+.-...+.++++...+. .....+ ++.+ ......++. ..+...++ ...-+|+|
T Consensus 606 p~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~~-~~~~~L---iG~~--pgy~g~~~~-g~l~~~v~~~p~~vLll 676 (857)
T PRK10865 606 PTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFMEK-HSVSRL---VGAP--PGYVGYEEG-GYLTEAVRRRPYSVILL 676 (857)
T ss_pred CCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhhh-hhHHHH---hCCC--Ccccccchh-HHHHHHHHhCCCCeEEE
Confidence 479999999999997 44333233455555442211 111111 2211 111111110 11222222 23469999
Q ss_pred eCCCCCCccChhHHHHhhcC
Q 046115 80 DDVWNEDYYKWEPFYKCLKN 99 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~ 99 (505)
|++.......+..+...+..
T Consensus 677 DEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 677 DEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred eehhhCCHHHHHHHHHHHhh
Confidence 99976666566666665543
No 234
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.43 E-value=0.48 Score=52.04 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCCC-------ccChhHHHHhhcCCCCCcEEEEEeCchH-----HHHH-hCCcceEeCCCCChhhHHHH
Q 046115 72 GKKFLLVLDDVWNED-------YYKWEPFYKCLKNSLHESKILITTRKET-----VARI-MGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iLiTtr~~~-----~~~~-~~~~~~~~l~~l~~~ea~~L 138 (505)
.++++|++|++..-. ..+...++......+.=..|-.||.++. .... ......+.+...+.++...+
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~i 349 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 349 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHH
Confidence 468999999985421 1122344444444443333334555442 1111 12344677888899999888
Q ss_pred HHHhh
Q 046115 139 FQSLA 143 (505)
Q Consensus 139 f~~~~ 143 (505)
+....
T Consensus 350 L~~l~ 354 (857)
T PRK10865 350 LRGLK 354 (857)
T ss_pred HHHHh
Confidence 86543
No 235
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.047 Score=57.55 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=52.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceE-EEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKF-LLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~-Llvl 79 (505)
+.|+|||-||+.++. ..-+.=+..+-++.++.-....+ ..|- +.++.-...++ -..|-+..++++| +|+|
T Consensus 529 PTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~EkHsV-----SrLI-GaPPGYVGyee-GG~LTEaVRr~PySViLl 599 (786)
T COG0542 529 PTGVGKTELAKALAE--ALFGDEQALIRIDMSEYMEKHSV-----SRLI-GAPPGYVGYEE-GGQLTEAVRRKPYSVILL 599 (786)
T ss_pred CCcccHHHHHHHHHH--HhcCCCccceeechHHHHHHHHH-----HHHh-CCCCCCceecc-ccchhHhhhcCCCeEEEe
Confidence 579999999999998 44322255566666653322221 2222 22222222222 2234445566655 8889
Q ss_pred eCCCCCCccChhHHHHhhcCC
Q 046115 80 DDVWNEDYYKWEPFYKCLKNS 100 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~ 100 (505)
|.|.......+..+.+.+.+.
T Consensus 600 DEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 600 DEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred chhhhcCHHHHHHHHHHhcCC
Confidence 999777766777777776654
No 236
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.37 E-value=1.9 Score=39.17 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|.|||++++.+.+ +....=--+ |.+. ..+..+.....+.++. ...|++|.+||
T Consensus 61 rGtGKSSlVkall~--~y~~~GLRl--Iev~--------------------k~~L~~l~~l~~~l~~--~~~kFIlf~DD 114 (249)
T PF05673_consen 61 RGTGKSSLVKALLN--EYADQGLRL--IEVS--------------------KEDLGDLPELLDLLRD--RPYKFILFCDD 114 (249)
T ss_pred CCCCHHHHHHHHHH--HHhhcCceE--EEEC--------------------HHHhccHHHHHHHHhc--CCCCEEEEecC
Confidence 69999999999988 343321111 2221 1122333333344432 34699999999
Q ss_pred CCCC-CccChhHHHHhhcC----CCCCcEEEEEeCchHHHH
Q 046115 82 VWNE-DYYKWEPFYKCLKN----SLHESKILITTRKETVAR 117 (505)
Q Consensus 82 v~~~-~~~~~~~~~~~~~~----~~~~~~iLiTtr~~~~~~ 117 (505)
+.=+ ....+..+...+.- ...+..|..||.-+++.+
T Consensus 115 LsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 115 LSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 8322 22344444433321 223455666776666544
No 237
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.37 E-value=0.084 Score=50.25 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=46.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. .....-..++||+..+.++.. .+.+++.... ..+...++....+....+ +..-
T Consensus 63 ~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 63 PESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 479999999999887 444444567799888766653 2344432211 112334455555554443 3567
Q ss_pred EEEEeCCC
Q 046115 76 LLVLDDVW 83 (505)
Q Consensus 76 LlvlDdv~ 83 (505)
++|+|.|.
T Consensus 136 lIVIDSv~ 143 (321)
T TIGR02012 136 IIVVDSVA 143 (321)
T ss_pred EEEEcchh
Confidence 99999984
No 238
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.37 E-value=0.08 Score=50.43 Aligned_cols=76 Identities=20% Similarity=0.160 Sum_probs=47.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC----CCChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS----AKDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. ...+.-..++||+....++.. .+..++... ...+.+.++....+....+ +.--
T Consensus 63 p~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 63 PESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 479999999999887 444444567899988777653 233343211 1122234455555554443 3467
Q ss_pred EEEEeCCC
Q 046115 76 LLVLDDVW 83 (505)
Q Consensus 76 LlvlDdv~ 83 (505)
++|+|.|.
T Consensus 136 lIVIDSva 143 (325)
T cd00983 136 LIVVDSVA 143 (325)
T ss_pred EEEEcchH
Confidence 89999974
No 239
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.35 E-value=0.032 Score=52.31 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=81.3
Q ss_pred CCCCceEEEecCCCccccccchhHH-------hhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccc
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQL-------FEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI 426 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 426 (505)
..++|+...++..........+|+. +....+|++|+|+++.. .-+.+..+-.-+.++..|+.|.|.+|. +
T Consensus 56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~--G~~g~~~l~~ll~s~~~L~eL~L~N~G-l 132 (382)
T KOG1909|consen 56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF--GPKGIRGLEELLSSCTDLEELYLNNCG-L 132 (382)
T ss_pred hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc--CccchHHHHHHHHhccCHHHHhhhcCC-C
Confidence 4557777776665543332223332 34556899999983221 001111122235678889999999988 5
Q ss_pred cccch--------------hhhcCCCCcEEecCCCcCccccch-----hccccccCceeecCCCcccccccc-------c
Q 046115 427 EKLPE--------------TLCELYNLERLNVDDCQNLRELPR-----GIGKLRKLMYLHNEDTGCLRYLPA-------G 480 (505)
Q Consensus 427 ~~lp~--------------~~~~l~~L~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~l~~~~~~~~~p~-------~ 480 (505)
+.... .+..-+.|+++....|+ +...+. .+...+.|+.+.+..|.. -|. .
T Consensus 133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I---~~eG~~al~ea 208 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGI---RPEGVTALAEA 208 (382)
T ss_pred ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccc---cCchhHHHHHH
Confidence 43322 23345778999888888 776664 367778899999888852 233 3
Q ss_pred ccCCccCCcccee
Q 046115 481 IGELIRLRRVREF 493 (505)
Q Consensus 481 i~~l~~L~~L~~~ 493 (505)
+.++++|+.|++.
T Consensus 209 l~~~~~LevLdl~ 221 (382)
T KOG1909|consen 209 LEHCPHLEVLDLR 221 (382)
T ss_pred HHhCCcceeeecc
Confidence 5677777777764
No 240
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.026 Score=51.71 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=88.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEeccccc---CCccccccccC
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRES---WPRNNLIKEIP 406 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~~~~p 406 (505)
.++.+.++.+..+......| ....+|++|.|+|..++|.. ..+++..++.++.|.++++.- .-..+.++...
T Consensus 98 ~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~--~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 98 ALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQ--STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred cceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhh--hhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 34445555554443222222 35789999999999988753 566677777777777762100 00011111100
Q ss_pred cc---cc-----------------CCCCcceeeccCCccccccc--hhhhcCCCCcEEecCCCcCccccc--hhcccccc
Q 046115 407 TN---IE-----------------KLLHLKYLNLKGQKKIEKLP--ETLCELYNLERLNVDDCQNLRELP--RGIGKLRK 462 (505)
Q Consensus 407 ~~---~~-----------------~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~ 462 (505)
.. +. .++++..+-+-.|+ +.... ...-.++.+..|+|+.++ +.+.- ..+..++.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQ 250 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCch
Confidence 00 01 12233333333333 22111 123345666677777766 44332 35678889
Q ss_pred CceeecCCCcccccccc------cccCCccCCccceeEecC
Q 046115 463 LMYLHNEDTGCLRYLPA------GIGELIRLRRVREFVVGG 497 (505)
Q Consensus 463 L~~L~l~~~~~~~~~p~------~i~~l~~L~~L~~~~~~~ 497 (505)
|+.|++++++..+.+-. -|+.+++++.|+.-.+++
T Consensus 251 l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred hheeeccCCcccccccCCcceEEEEeeccceEEecCcccch
Confidence 99999999886665533 267888888888765554
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.23 E-value=0.19 Score=43.72 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
.-.+.+.+..++=++++|..... +......+...+.....+..||++|.+.....
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 33455566667788899997542 22223333343333223677888888876654
No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.14 E-value=0.39 Score=41.86 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=59.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC--CCCHHH------HHHHHHHHcCCCC-----CCChhcHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE--PFDEFR------IARAIIESLTPGS-----AKDLVEFQSLMQHIE 67 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~------~~~~l~~~l~~~~-----~~~~~~~~~~~~~l~ 67 (505)
..|+|||||++.++. .. .-..+.++++-.. ..+... ...++++.++... ....+.-+...-.+.
T Consensus 33 ~nGsGKStLl~~i~G--~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 33 PNGAGKSTLLKTLAG--LL-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred CCCCCHHHHHHHHhC--CC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 369999999999987 32 2245555543211 111111 1222445444221 112222233334456
Q ss_pred HHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CC-CcEEEEEeCchHHHH
Q 046115 68 ECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LH-ESKILITTRKETVAR 117 (505)
Q Consensus 68 ~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~-~~~iLiTtr~~~~~~ 117 (505)
+.+...+-++++|..... +......+...+... .. +..||++|.+.....
T Consensus 110 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 666677789999997442 222333444444332 12 567888888866543
No 243
>PRK09354 recA recombinase A; Provisional
Probab=94.12 E-value=0.11 Score=50.05 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=47.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. ...+.=..++||+....++.. .+..++.... ..+...++....+...++ +..-
T Consensus 68 ~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 68 PESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 479999999999887 444444667899988877763 2344432210 112234455555555443 3566
Q ss_pred EEEEeCCC
Q 046115 76 LLVLDDVW 83 (505)
Q Consensus 76 LlvlDdv~ 83 (505)
++|+|.|.
T Consensus 141 lIVIDSva 148 (349)
T PRK09354 141 LIVVDSVA 148 (349)
T ss_pred EEEEeChh
Confidence 89999984
No 244
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.06 E-value=0.4 Score=43.87 Aligned_cols=136 Identities=16% Similarity=0.106 Sum_probs=75.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC-----CCCHHHHHHHHHHHcCCCCC------CChhcHHHHHHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-----PFDEFRIARAIIESLTPGSA------KDLVEFQSLMQHIEECV 70 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~l~~~l 70 (505)
+|.||||+++.+.. -..- -.+.+++.... .....+...+++...+.... .+.+.-+...-.+.+.+
T Consensus 48 SG~GKSTlgr~i~~--L~~p-t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILG--LEEP-TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHc--CcCC-CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 79999999999998 3322 23444443222 22344556677777664331 22333344445577777
Q ss_pred CCceEEEEEeCCCCCCccCh-hHHHHhhcC--CCCCcEEEEEeCchHHHHHhCC-cceEeC-CCCChhhHHHHHH
Q 046115 71 AGKKFLLVLDDVWNEDYYKW-EPFYKCLKN--SLHESKILITTRKETVARIMGS-THVISV-NVLSEMECWSVFQ 140 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~-~~~~~~~~~--~~~~~~iLiTtr~~~~~~~~~~-~~~~~l-~~l~~~ea~~Lf~ 140 (505)
.-++-++|.|...+.-+... .++...+.+ ...|...|..|-+-.+...+.. ..++.+ .-.+...+.++|.
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 88889999999755322222 334433332 2346677888887666655432 112222 2234445555554
No 245
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.06 E-value=0.18 Score=46.18 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-------------------CChhcHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA-------------------KDLVEFQS 61 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~-------------------~~~~~~~~ 61 (505)
.+|+|||+||.+++. ....+=..++|++..+.+ .++.+.+ .+++.... ....+.++
T Consensus 33 ~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ 107 (234)
T PRK06067 33 DHGTGKSVLSQQFVY--GALKQGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLANK 107 (234)
T ss_pred CCCCChHHHHHHHHH--HHHhCCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHHH
Confidence 379999999999976 333333567789886543 3444432 22321110 01123345
Q ss_pred HHHHHHHHcCC-ceEEEEEeCCCC----CCccChhHHHHhhcC-CCCCcEEEEEeCc
Q 046115 62 LMQHIEECVAG-KKFLLVLDDVWN----EDYYKWEPFYKCLKN-SLHESKILITTRK 112 (505)
Q Consensus 62 ~~~~l~~~l~~-~r~LlvlDdv~~----~~~~~~~~~~~~~~~-~~~~~~iLiTtr~ 112 (505)
..+.+...... +.-++|+|.+.. .+......+...+.. ...+..+++|+..
T Consensus 108 ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 108 LLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 55556555543 556899999752 111122333222321 1235567777653
No 246
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.00 E-value=0.4 Score=44.01 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=66.1
Q ss_pred CCCCcHHHHHHHHhcCccccc------------CCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCC----------C--
Q 046115 1 MGGIGKTTLAQFAYNNGDVER------------NFEKRTWVCVSEPF-DEFRIARAIIESLTPGSAK----------D-- 55 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~------------~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~----------~-- 55 (505)
++|+|||+||..++. .+.. .=..+++++...+. ...+-+..+...+...... .
T Consensus 9 ~~G~GKS~lal~la~--~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~~~~l 86 (239)
T cd01125 9 PGGTGKSSLLLVLAL--AMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGRIQPI 86 (239)
T ss_pred CCCCCHHHHHHHHHH--HHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccCCCce
Confidence 589999999988876 2221 11134455555443 3344455555544211000 0
Q ss_pred ---h---hcHHHHHHHHHHHc-CCceEEEEEeCCCC------CCccChhHHHHhhcC--CCCCcEEEEEeCchHHHH---
Q 046115 56 ---L---VEFQSLMQHIEECV-AGKKFLLVLDDVWN------EDYYKWEPFYKCLKN--SLHESKILITTRKETVAR--- 117 (505)
Q Consensus 56 ---~---~~~~~~~~~l~~~l-~~~r~LlvlDdv~~------~~~~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~--- 117 (505)
. .......+.+.+.+ ..+.-++|+|.+.. .+......+...+.. ...++.|++++-......
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~ 166 (239)
T cd01125 87 SIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDG 166 (239)
T ss_pred ecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCc
Confidence 0 01112233333333 34567999997632 122233344444432 134677888776542111
Q ss_pred -----------HhC-CcceEeCCCCChhhHHH
Q 046115 118 -----------IMG-STHVISVNVLSEMECWS 137 (505)
Q Consensus 118 -----------~~~-~~~~~~l~~l~~~ea~~ 137 (505)
..+ ....+.+.+++.+|+.+
T Consensus 167 ~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 167 DTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 001 12366677777777665
No 247
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.98 E-value=1.4 Score=39.35 Aligned_cols=15 Identities=33% Similarity=0.189 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
|+|+||||-+..+++
T Consensus 56 pPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 56 PPGTGKTTSILCLAR 70 (333)
T ss_pred CCCCchhhHHHHHHH
Confidence 689999999888887
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.95 E-value=0.9 Score=43.85 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCchHHHHH-h---CC-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 046115 101 LHESKILITTRKETVARI-M---GS-THVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 101 ~~~~~iLiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
..+..||+||.++..... + +. ...| ..-+.++-.++++.+.-. .. .+ ...+.+|+....|-|+-
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~-~~--l~---~~dv~~Lv~~f~gq~~D 334 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD-DG--VS---REDVVKLVDTFPGQPLD 334 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc-CC--CC---HHHHHHHHHcCCCCCch
Confidence 456778999988664322 1 11 1233 334566666676655422 11 11 23466677777777753
No 249
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.90 E-value=0.54 Score=44.05 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CCceEEEEeCCCCCHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEPFDEFRIARAIIES 47 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ 47 (505)
.+|+|||++|.+++. ....+ =..++|++...+ ..++...+...
T Consensus 38 ~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 38 GTGVGKTTFLREYAL--DLITQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 379999999999987 44333 356778887663 34445554443
No 250
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.011 Score=54.13 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhc-CcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccc-cc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEK-LTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIE-KL 429 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~l 429 (505)
+..|+.|..|+++-+.++... +.-.+.. -.+|..|+|+|+.. +-....+.--...+++|..|||+.|-.++ ..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rr---nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRR---NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHh---hhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 346788888888777653221 2211222 34788888886521 11111222224578999999999987665 33
Q ss_pred chhhhcCCCCcEEecCCCcCccccch---hccccccCceeecCCCc
Q 046115 430 PETLCELYNLERLNVDDCQNLRELPR---GIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~l~~L~~L~l~~~~ 472 (505)
...+.+++.|++|.++.|.. ..|. .++..|+|.+|++.||-
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 44578999999999999883 2333 36888999999998874
No 251
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.71 Score=42.48 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=82.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHH----HHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLM----QHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~l~~~l~~~r~L 76 (505)
++|.||||||.-+++ +...++ -+..+...+-..-+..++..+..++.--.++..+.. +.+.-.+.+-+.=
T Consensus 60 PPGlGKTTLA~IIA~--Emgvn~----k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 60 PPGLGKTTLAHIIAN--ELGVNL----KITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred CCCCcHHHHHHHHHH--HhcCCe----EecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Confidence 589999999999999 554443 223333333333344445545433322222222211 2223333333333
Q ss_pred EEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCC--cceEeCCCCChhhHHHHHHHhhhCCCCCCCCch
Q 046115 77 LVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGS--THVISVNVLSEMECWSVFQSLAISGKTIGKREN 154 (505)
Q Consensus 77 lvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~--~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~ 154 (505)
|++.-=.... .+.-.++ +-.-|=.|||--.+...... ..+..++-.+.+|-.++..+.+..-.. +-
T Consensus 134 I~IG~gp~Ar-----sv~ldLp---pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i 201 (332)
T COG2255 134 IIIGKGPAAR-----SIRLDLP---PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EI 201 (332)
T ss_pred EEEccCCccc-----eEeccCC---CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CC
Confidence 3333221111 0111222 22335568886544332211 225567778889998888887733222 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 046115 155 LEKIGREIVKKCKGLPLAAKTIASLLRS 182 (505)
Q Consensus 155 ~~~~~~~i~~~~~g~Plal~~~~~~l~~ 182 (505)
.++.+.+|++...|-|- ++.+.+++
T Consensus 202 ~~~~a~eIA~rSRGTPR---IAnRLLrR 226 (332)
T COG2255 202 DEEAALEIARRSRGTPR---IANRLLRR 226 (332)
T ss_pred ChHHHHHHHHhccCCcH---HHHHHHHH
Confidence 34668899999999994 44444443
No 252
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.82 E-value=0.088 Score=46.57 Aligned_cols=108 Identities=22% Similarity=0.174 Sum_probs=49.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe----CCCC-----CHHH----HHHHHHHHcCCCCCCChhcHHHHHHH--
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV----SEPF-----DEFR----IARAIIESLTPGSAKDLVEFQSLMQH-- 65 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~----~~~~-----~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~-- 65 (505)
++|.|||.||.+.+-+.-..++|+.++++.- ++.. +..+ .+.-+...+..-. .....+...+.
T Consensus 27 ~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~ 104 (205)
T PF02562_consen 27 PAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF--GKEKLEELIQNGK 104 (205)
T ss_dssp -TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS---TTCHHHHHHTTS
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh--ChHhHHHHhhcCe
Confidence 4799999999888764333578888887641 1111 1111 1112222222100 11112221110
Q ss_pred ----HHHHcCC---ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 66 ----IEECVAG---KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 66 ----l~~~l~~---~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
-...+++ ...++|+|.+++-...++..++. ..+.+|+++++--..
T Consensus 105 Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~ 156 (205)
T PF02562_consen 105 IEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPS 156 (205)
T ss_dssp EEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE---
T ss_pred EEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCce
Confidence 0012334 35899999998876555555544 456889999987654
No 253
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.17 Score=48.81 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHHHHHHHHHcCCceEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
+|+|||||..+++. ..+.+. .+++|+-.++..- .+--+.+++.+... ...+++...+.+.+ .+.-++
T Consensus 102 PGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~p~lv 172 (456)
T COG1066 102 PGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ---EKPDLV 172 (456)
T ss_pred CCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHHh---cCCCEE
Confidence 79999999999998 666665 7888987765433 33334555533322 23444444444443 577899
Q ss_pred EEeCCCC
Q 046115 78 VLDDVWN 84 (505)
Q Consensus 78 vlDdv~~ 84 (505)
|+|.++.
T Consensus 173 VIDSIQT 179 (456)
T COG1066 173 VIDSIQT 179 (456)
T ss_pred EEeccce
Confidence 9999855
No 254
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.76 E-value=0.18 Score=54.43 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-CChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA-KDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
++|+|||.||+.++. .. +...+.++.++..+... +-..++.+.. ......+.....++ .....+++|
T Consensus 492 p~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~----~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~Vvll 559 (731)
T TIGR02639 492 PTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHT----VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLL 559 (731)
T ss_pred CCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhccc----HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEE
Confidence 479999999999998 44 23445666554322111 1111221111 11111122222222 234579999
Q ss_pred eCCCCCCccChhHHHHhhcC
Q 046115 80 DDVWNEDYYKWEPFYKCLKN 99 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~ 99 (505)
|+++......+..+.+.+..
T Consensus 560 DEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 560 DEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred echhhcCHHHHHHHHHhhcc
Confidence 99977666566666665553
No 255
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.036 Score=50.84 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=59.9
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccc-ccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIE-KLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~ 432 (505)
.++.++.|+|.+|.++..++ +...+.+|+.|++|+|+-+.. ++.++.+| -.+.+|++|-|.|+...+ ..-+.
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L---~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSL---SSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcC---CCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 45788888999998887766 666688899999999881111 22344444 346688888888877432 44444
Q ss_pred hhcCCCCcEEecCCCc
Q 046115 433 LCELYNLERLNVDDCQ 448 (505)
Q Consensus 433 ~~~l~~L~~L~l~~~~ 448 (505)
+..++.++.|.++.|.
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 5677777777777764
No 256
>PRK05973 replicative DNA helicase; Provisional
Probab=93.66 E-value=0.39 Score=43.65 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
.+|+|||++|.+++. ....+-..+++++...+
T Consensus 72 ~PG~GKT~lalqfa~--~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 72 RPGHGKTLLGLELAV--EAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEEEeCC
Confidence 379999999999987 44344456777877665
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.48 Score=48.14 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||.||+++++ +.. +-|+.++.+ +|+..+. ....+...+...+.-..-++++++|
T Consensus 231 PPGCGKT~lA~AiAg--el~-----vPf~~isAp--------eivSGvS------GESEkkiRelF~~A~~~aPcivFiD 289 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAG--ELG-----VPFLSISAP--------EIVSGVS------GESEKKIRELFDQAKSNAPCIVFID 289 (802)
T ss_pred CCCccHHHHHHHHhh--hcC-----CceEeecch--------hhhcccC------cccHHHHHHHHHHHhccCCeEEEee
Confidence 589999999999999 443 334544431 2232222 2223334444444556679999999
Q ss_pred CCCCCC------cc-----ChhHHHHhhcCC------CCCcEEEE-EeCchHHHHH---hCC-cceEeCCCCChhhHHHH
Q 046115 81 DVWNED------YY-----KWEPFYKCLKNS------LHESKILI-TTRKETVARI---MGS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 81 dv~~~~------~~-----~~~~~~~~~~~~------~~~~~iLi-Ttr~~~~~~~---~~~-~~~~~l~~l~~~ea~~L 138 (505)
+++-.. +. ...+++..+..- +.+.-||- |+|-..+... .+. .+.+.+..-+...-.++
T Consensus 290 eIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 290 EIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEI 369 (802)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHH
Confidence 984411 11 123444444322 12222333 4443333222 222 45677777777776677
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCC----ChHHHHHHHHHh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKG----LPLAAKTIASLL 180 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g----~Plal~~~~~~l 180 (505)
+....-+-+. ...-+ .++|++..-| --.||...|+..
T Consensus 370 L~~~~~~lrl-~g~~d----~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 370 LRIICRGLRL-SGDFD----FKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred HHHHHhhCCC-CCCcC----HHHHHhcCCCccchhHHHHHHHHHHH
Confidence 7655432222 12223 3345555544 335555555543
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=1.1 Score=46.03 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||++|+.+++ +-..+| +.+.. .+++..+. ........+..++.-.--.++|.||
T Consensus 476 PPGC~KT~lAkalAn--e~~~nF-----lsvkg--------pEL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfD 534 (693)
T KOG0730|consen 476 PPGCGKTLLAKALAN--EAGMNF-----LSVKG--------PELFSKYV------GESERAIREVFRKARQVAPCIIFFD 534 (693)
T ss_pred CCCcchHHHHHHHhh--hhcCCe-----eeccC--------HHHHHHhc------CchHHHHHHHHHHHhhcCCeEEehh
Confidence 589999999999999 555555 33322 12222222 1111112222222223345788888
Q ss_pred CCCCCC-----------ccChhHHHHhhcCCCCCcEEEE---EeCchHHHHHh-C--C-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNED-----------YYKWEPFYKCLKNSLHESKILI---TTRKETVARIM-G--S-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~-----------~~~~~~~~~~~~~~~~~~~iLi---Ttr~~~~~~~~-~--~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
.++.-. .-.+.+++..+.-......|+| |-|...+...+ . . ..++-++.-+.+.-.++|+.+
T Consensus 535 EiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 535 EIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred hHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHH
Confidence 773311 0112233333332222223333 33333333322 2 2 456777777888888899888
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+..-.. .+..+ ..+|++..+|+.
T Consensus 615 ~kkmp~-~~~vd----l~~La~~T~g~S 637 (693)
T KOG0730|consen 615 AKKMPF-SEDVD----LEELAQATEGYS 637 (693)
T ss_pred HhcCCC-Ccccc----HHHHHHHhccCC
Confidence 743332 22233 345555555544
No 259
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.60 E-value=0.031 Score=48.21 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTWVCVSEPFD 36 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~wv~~~~~~~ 36 (505)
+.|+|||.+|+.++. ... +.....+-++++...+
T Consensus 11 psGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 11 PSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp STTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred CCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 479999999999998 665 5666777788776444
No 260
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.54 E-value=0.21 Score=48.06 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN----FEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||++|.+++........ =..++||+....++...+. ++++.++
T Consensus 110 ~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 110 EFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 4799999999998863222111 1368899998887776554 4445544
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.45 E-value=0.032 Score=46.40 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCc-eEEEEeCCCCCHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEK-RTWVCVSEPFDEFRIA 41 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~ 41 (505)
.+|+|||+||+.+++ .. .. ..-+.+....+..++.
T Consensus 7 ~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 7 PPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp SSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHH
T ss_pred CCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccce
Confidence 479999999999998 44 22 2235666666665444
No 262
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.40 E-value=0.24 Score=47.51 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN----FEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||++|.+++........ =..++||+....++...+. +++..++
T Consensus 103 ~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 103 EFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3799999999998763222111 1268899998888776544 4455544
No 263
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.40 E-value=0.052 Score=26.75 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.1
Q ss_pred CCcEEecCCCc
Q 046115 438 NLERLNVDDCQ 448 (505)
Q Consensus 438 ~L~~L~l~~~~ 448 (505)
+|+.|+|++|+
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444444
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.33 E-value=0.26 Score=47.06 Aligned_cols=48 Identities=25% Similarity=0.228 Sum_probs=32.3
Q ss_pred CCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER----NFEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||.+++-..+... .=..++||+....+..+.+. ++++.++
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 479999999988764222221 12367899998888776654 4566665
No 265
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.81 Score=42.83 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHhcCc--ccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCce--EE
Q 046115 1 MGGIGKTTLAQFAYNNG--DVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKK--FL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r--~L 76 (505)
++|.|||+|+++++..- +...+|....-+.++. ..+..++...+. .-.....+.+.+.+.++. +.
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------hsLFSKWFsESg---KlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------HSLFSKWFSESG---KLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------hHHHHHHHhhhh---hHHHHHHHHHHHHHhCCCcEEE
Confidence 68999999999999863 2335565555555443 223333321111 122334455555555543 45
Q ss_pred EEEeCC
Q 046115 77 LVLDDV 82 (505)
Q Consensus 77 lvlDdv 82 (505)
+.+|.|
T Consensus 254 vLIDEV 259 (423)
T KOG0744|consen 254 VLIDEV 259 (423)
T ss_pred EEeHHH
Confidence 557887
No 266
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.25 E-value=1.4 Score=45.74 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHhcCcc---cc---cCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-----
Q 046115 2 GGIGKTTLAQFAYNNGD---VE---RNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV----- 70 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~---~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l----- 70 (505)
+|+|||+....|.+.-+ .+ ..|+ -+.|+...-....++...|+.++...... +....+.|..+.
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~----~~~al~~L~~~f~~~k~ 505 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVT----WDAALEALNFRFTVPKP 505 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCccc----HHHHHHHHHHhhccCCC
Confidence 69999999999987311 11 2233 33566666677899999999999733333 333344444444
Q ss_pred CCceEEEEEeCCC
Q 046115 71 AGKKFLLVLDDVW 83 (505)
Q Consensus 71 ~~~r~LlvlDdv~ 83 (505)
+.+.+++++|+++
T Consensus 506 ~~~~~VvLiDElD 518 (767)
T KOG1514|consen 506 KRSTTVVLIDELD 518 (767)
T ss_pred CCCCEEEEeccHH
Confidence 2357899999873
No 267
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.09 E-value=0.42 Score=52.02 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ .....| +-++++...+..+ +... ...-.....+...+.+.... ..+-+|+||
T Consensus 355 ppG~GKT~lAk~iA~--~l~~~~---~~i~~~~~~~~~~----i~g~---~~~~~g~~~g~i~~~l~~~~-~~~~villD 421 (775)
T TIGR00763 355 PPGVGKTSLGKSIAK--ALNRKF---VRFSLGGVRDEAE----IRGH---RRTYVGAMPGRIIQGLKKAK-TKNPLFLLD 421 (775)
T ss_pred CCCCCHHHHHHHHHH--HhcCCe---EEEeCCCcccHHH----HcCC---CCceeCCCCchHHHHHHHhC-cCCCEEEEe
Confidence 479999999999998 554443 2223333222211 1110 00000111122233333332 333478999
Q ss_pred CCCCCCcc----ChhHHHHhhcC--------C------C-CCcEEEEEeCchH-HHH-HhCCcceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDYY----KWEPFYKCLKN--------S------L-HESKILITTRKET-VAR-IMGSTHVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~~----~~~~~~~~~~~--------~------~-~~~~iLiTtr~~~-~~~-~~~~~~~~~l~~l~~~ea~~Lf 139 (505)
.++..... ....+...+.+ . + .+.-+|.||.... +.. ......++++.+++.++-.+++
T Consensus 422 Eidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~ 501 (775)
T TIGR00763 422 EIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIA 501 (775)
T ss_pred chhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHH
Confidence 98553211 11223332221 0 0 2333444554432 111 1234568899999998888887
Q ss_pred HHhh
Q 046115 140 QSLA 143 (505)
Q Consensus 140 ~~~~ 143 (505)
..+.
T Consensus 502 ~~~l 505 (775)
T TIGR00763 502 KKYL 505 (775)
T ss_pred HHHH
Confidence 6643
No 268
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.6 Score=40.30 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.+.+..++-++++|.-... +......+...+.....+..||++|.+......
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 55556667789999997542 222233344444333235678888888766543
No 269
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.05 E-value=0.21 Score=48.19 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCCCcHHHHHHHHhcCccccc---C-CCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER---N-FEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+|+.+++-..+... . -..++||+....+...++.+ +++.++
T Consensus 134 ~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 134 EFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 379999999988864322221 1 24678999999888766544 566665
No 270
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.00 E-value=0.005 Score=54.20 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=63.6
Q ss_pred hhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhcc
Q 046115 379 FEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIG 458 (505)
Q Consensus 379 ~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 458 (505)
+-.+...++||++ .+..-.+...++.++.|..|+++.|. +..+|..++++..+..+++..|. ....|.+.+
T Consensus 38 i~~~kr~tvld~~-------s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLS-------SNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhh-------hhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 5566777777777 55555666667777777777887777 77777777777777777776665 777777777
Q ss_pred ccccCceeecCCCcccc
Q 046115 459 KLRKLMYLHNEDTGCLR 475 (505)
Q Consensus 459 ~l~~L~~L~l~~~~~~~ 475 (505)
+++.+++++..+|.+..
T Consensus 109 k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccCCcchhhhccCcchH
Confidence 77878777777776443
No 271
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=1.3 Score=46.79 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=80.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||-||++++.. . ++-|++++.+ +.++.+. ........+.....-.+.+++|.+|
T Consensus 352 PPGTGKTLLAKAiAGE--A-----gVPF~svSGS--------EFvE~~~------g~~asrvr~lf~~ar~~aP~iifid 410 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGE--A-----GVPFFSVSGS--------EFVEMFV------GVGASRVRDLFPLARKNAPSIIFID 410 (774)
T ss_pred CCCCcHHHHHHHHhcc--c-----CCceeeechH--------HHHHHhc------ccchHHHHHHHHHhhccCCeEEEec
Confidence 5899999999999983 2 3445666542 2223232 0111122222222334567888888
Q ss_pred CCCCC---------------CccChhHHHHhhcCCCC--CcEEEEEeCchHHHHHh----CC-cceEeCCCCChhhHHHH
Q 046115 81 DVWNE---------------DYYKWEPFYKCLKNSLH--ESKILITTRKETVARIM----GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 81 dv~~~---------------~~~~~~~~~~~~~~~~~--~~~iLiTtr~~~~~~~~----~~-~~~~~l~~l~~~ea~~L 138 (505)
.++.. ....+.+++..+..+.. +.-+|-+|+.+++.... +. .+.+.++.-+...-.++
T Consensus 411 eida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 411 EIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASI 490 (774)
T ss_pred ccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHH
Confidence 87331 11223445555554433 33344566665553321 22 45677777788888899
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|..++-.-.. ..+..++.+ ++...-|++
T Consensus 491 ~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ 518 (774)
T KOG0731|consen 491 LKVHLRKKKL---DDEDVDLSK-LASLTPGFS 518 (774)
T ss_pred HHHHhhccCC---CcchhhHHH-HHhcCCCCc
Confidence 9888743332 223344455 888888877
No 272
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.90 E-value=0.15 Score=43.97 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIES 47 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 47 (505)
+|+|||++|..++. .... .++++.-.... ..+....+...
T Consensus 10 ~~sGKS~~a~~l~~--~~~~---~~~~iat~~~~-~~e~~~ri~~h 49 (170)
T PRK05800 10 ARSGKSRFAERLAA--QSGL---QVLYIATAQPF-DDEMAARIAHH 49 (170)
T ss_pred CCccHHHHHHHHHH--HcCC---CcEeCcCCCCC-hHHHHHHHHHH
Confidence 69999999999987 3211 23444444333 33555555443
No 273
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.86 E-value=0.63 Score=40.62 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF 23 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f 23 (505)
.+|+||||+|++++. ..+++-
T Consensus 9 yPgsGKTtfakeLak--~L~~~i 29 (261)
T COG4088 9 YPGSGKTTFAKELAK--ELRQEI 29 (261)
T ss_pred CCCCCchHHHHHHHH--HHHHhh
Confidence 489999999999987 554443
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.73 E-value=0.65 Score=50.33 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ +....| +.++... +..... ..........+.......+.+|++|
T Consensus 220 ppGtGKT~laraia~--~~~~~~---i~i~~~~----------i~~~~~------g~~~~~l~~lf~~a~~~~p~il~iD 278 (733)
T TIGR01243 220 PPGTGKTLLAKAVAN--EAGAYF---ISINGPE----------IMSKYY------GESEERLREIFKEAEENAPSIIFID 278 (733)
T ss_pred CCCCChHHHHHHHHH--HhCCeE---EEEecHH----------Hhcccc------cHHHHHHHHHHHHHHhcCCcEEEee
Confidence 479999999999998 443322 2232111 111110 0111122223333334567899999
Q ss_pred CCCCCCc-----------cChhHHHHhhcCC-CCCcEEEE-EeCchH-HHHHhC---C-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNEDY-----------YKWEPFYKCLKNS-LHESKILI-TTRKET-VARIMG---S-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~~-----------~~~~~~~~~~~~~-~~~~~iLi-Ttr~~~-~~~~~~---~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
+++.... .....+...+... ..+..++| ||.... +..... . ...+.+...+.++-.+++...
T Consensus 279 Eid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 279 EIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred hhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 9844210 0122333333322 22333444 554432 222111 1 346777888888888888755
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
.-. ...... .....+++.+.|+.
T Consensus 359 ~~~-~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 359 TRN-MPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred hcC-CCCccc----cCHHHHHHhCCCCC
Confidence 421 111111 22556777887765
No 275
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.66 E-value=0.39 Score=41.11 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF--DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
..|+|||||.+.++.. . .-..+.++++..... +..... ...+. .....+.-+...-.+.+.+...+-+++
T Consensus 34 ~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~---~~~i~--~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 34 ENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSFASPRDAR---RAGIA--MVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCcCCHHHHH---hcCeE--EEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 3699999999999873 2 234555655422211 111111 11111 001122333334445566666778888
Q ss_pred EeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHH
Q 046115 79 LDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVAR 117 (505)
Q Consensus 79 lDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~ 117 (505)
+|+.... +......+...+... ..+..||++|.+.....
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9997442 222333444444332 23667888888876443
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.65 E-value=0.93 Score=37.83 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|.|||||++.++.. . .-..+.+|++... .+. -....+.-+...-.+.+.+..++-++++|+
T Consensus 35 nGsGKStLl~~l~G~--~-~~~~G~i~~~~~~-------------~i~--~~~~lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 35 NGAGKSTLLKLIAGE--L-EPDEGIVTWGSTV-------------KIG--YFEQLSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred CCCCHHHHHHHHcCC--C-CCCceEEEECCeE-------------EEE--EEccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 699999999999873 2 2234555553210 000 000022222333345556666777899999
Q ss_pred CCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 82 VWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 82 v~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
.... +......+...+... +..||++|.+.....
T Consensus 97 P~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7442 222334444444433 346888888766554
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.64 E-value=0.068 Score=43.09 Aligned_cols=15 Identities=40% Similarity=0.359 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.+++
T Consensus 7 ~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 7 PPGSGKSTLAKELAE 21 (121)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999998
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.62 E-value=0.2 Score=49.06 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHHHHHHHHHcCCceEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
+|+|||||+.+++. .....-..++|++..+..+ ....-+..++..... ...+.++..+.+. ..+.-++
T Consensus 91 pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs~~---qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~---~~~~~lV 162 (372)
T cd01121 91 PGIGKSTLLLQVAA--RLAKRGGKVLYVSGEESPE---QIKLRADRLGISTENLYLLAETNLEDILASIE---ELKPDLV 162 (372)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEECCcCHH---HHHHHHHHcCCCcccEEEEccCcHHHHHHHHH---hcCCcEE
Confidence 79999999999987 4444445677887655422 222223445422211 1123333333332 2245578
Q ss_pred EEeCCC
Q 046115 78 VLDDVW 83 (505)
Q Consensus 78 vlDdv~ 83 (505)
|+|.+.
T Consensus 163 VIDSIq 168 (372)
T cd01121 163 IIDSIQ 168 (372)
T ss_pred EEcchH
Confidence 888873
No 279
>PRK04328 hypothetical protein; Provisional
Probab=92.56 E-value=0.39 Score=44.36 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
.+|+|||+||.+++. +..++-..++|++..+.+
T Consensus 31 ~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 31 GPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEHP 63 (249)
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCCH
Confidence 379999999998876 333444677889877644
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.54 E-value=1.4 Score=37.83 Aligned_cols=110 Identities=14% Similarity=0.022 Sum_probs=53.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE-------eCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC-------VSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGK 73 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 73 (505)
..|.|||||++.++.. ... ..+.++++ +.+...... ..+.+.+........+.-++..-.+.+.+..+
T Consensus 35 ~nGsGKSTLl~~l~G~--~~~-~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 35 PSGTGKSSLFRALAGL--WPW-GSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred CCCCCHHHHHHHHhcC--CCC-CCceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence 3699999999999874 211 12222221 112111110 01222221111222333334444456666667
Q ss_pred eEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 74 KFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 74 r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
+-++++|.-... +......+...+... +..||++|.+.....
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 778889986442 222233344434333 356888888766543
No 281
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.54 E-value=0.43 Score=51.66 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=64.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.++. .....| +-++++...+..++...-....+ ...+...+.+... ...+-+|+||
T Consensus 357 ppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~~~~g-------~~~G~~~~~l~~~-~~~~~villD 423 (784)
T PRK10787 357 PPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRRTYIG-------SMPGKLIQKMAKV-GVKNPLFLLD 423 (784)
T ss_pred CCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchhccCC-------CCCcHHHHHHHhc-CCCCCEEEEE
Confidence 489999999999997 444433 22334443333211111000011 1112223333322 2234578899
Q ss_pred CCCCCCccC----hhHHHHhhcCC--------------C-CCcEEEEEeCchHHHHH-hCCcceEeCCCCChhhHHHHHH
Q 046115 81 DVWNEDYYK----WEPFYKCLKNS--------------L-HESKILITTRKETVARI-MGSTHVISVNVLSEMECWSVFQ 140 (505)
Q Consensus 81 dv~~~~~~~----~~~~~~~~~~~--------------~-~~~~iLiTtr~~~~~~~-~~~~~~~~l~~l~~~ea~~Lf~ 140 (505)
.++...... ...+...+.+. + ...-+|.|+....+... .+...++++.+++.+|-.++..
T Consensus 424 Eidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~ 503 (784)
T PRK10787 424 EIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAK 503 (784)
T ss_pred ChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHH
Confidence 985533211 24444443321 1 23334445544332221 2345688899999999888877
Q ss_pred Hhh
Q 046115 141 SLA 143 (505)
Q Consensus 141 ~~~ 143 (505)
.+.
T Consensus 504 ~~L 506 (784)
T PRK10787 504 RHL 506 (784)
T ss_pred Hhh
Confidence 654
No 282
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.45 E-value=0.42 Score=46.20 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHhcCccccc---CC-CceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER---NF-EKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||..++-...... .- ..++||+....+..+++ .++++.++
T Consensus 131 ~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 131 EFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred CCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 379999999988874222211 11 25889999998887655 45566654
No 283
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.62 Score=48.36 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-ChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK-DLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
++|+|||.|++.+++ ...+.| +-+.++.-.|..++ ...... -..-.+..++.+.+ .+.++-+++|
T Consensus 358 PPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI--------RGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LL 423 (782)
T COG0466 358 PPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI--------RGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLL 423 (782)
T ss_pred CCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh--------ccccccccccCChHHHHHHHH-hCCcCCeEEe
Confidence 689999999999998 666666 33445554443221 101000 11112233333332 2456778999
Q ss_pred eCCCCCCc----------------cChhHHHHhhcC--CCCCcEEEEEeCch-H-H-HHHhCCcceEeCCCCChhhHHHH
Q 046115 80 DDVWNEDY----------------YKWEPFYKCLKN--SLHESKILITTRKE-T-V-ARIMGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~~----------------~~~~~~~~~~~~--~~~~~~iLiTtr~~-~-~-~~~~~~~~~~~l~~l~~~ea~~L 138 (505)
|.++.... .+-..|.+.+.+ .+-.-.+.|+|-+. + + .+..+...++++.+-+.+|-.++
T Consensus 424 DEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~I 503 (782)
T COG0466 424 DEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEI 503 (782)
T ss_pred echhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHH
Confidence 99844211 122233333332 12333466666652 2 2 33345667999999999998877
Q ss_pred HHHhh
Q 046115 139 FQSLA 143 (505)
Q Consensus 139 f~~~~ 143 (505)
-.++.
T Consensus 504 Ak~~L 508 (782)
T COG0466 504 AKRHL 508 (782)
T ss_pred HHHhc
Confidence 77665
No 284
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.97 Score=46.95 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||.+|+.+++ ...+.| +-++++.-.|..++- +.-..--..-.+..++.|.+. +..+-|+.+|
T Consensus 446 PPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk-------GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiD 512 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK-------GHRRTYVGAMPGKIIQCLKKV-KTENPLILID 512 (906)
T ss_pred CCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc-------ccceeeeccCChHHHHHHHhh-CCCCceEEee
Confidence 589999999999998 666665 223455544432211 000001112223344444333 3456688888
Q ss_pred CCCCC----------------CccChhHHHHhhcC--CCCCcEEEEEeCch-H--HHHHhCCcceEeCCCCChhhHHHHH
Q 046115 81 DVWNE----------------DYYKWEPFYKCLKN--SLHESKILITTRKE-T--VARIMGSTHVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~----------------~~~~~~~~~~~~~~--~~~~~~iLiTtr~~-~--~~~~~~~~~~~~l~~l~~~ea~~Lf 139 (505)
.|+.- +..+-..|.+.+.+ .+-.....|.|-+. + .....+...++++.+...+|-+.+-
T Consensus 513 EvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA 592 (906)
T KOG2004|consen 513 EVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIA 592 (906)
T ss_pred hhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHH
Confidence 88331 11223334444443 12222344555542 1 1222345568999999999977777
Q ss_pred HHhhh
Q 046115 140 QSLAI 144 (505)
Q Consensus 140 ~~~~~ 144 (505)
.++..
T Consensus 593 ~~yLi 597 (906)
T KOG2004|consen 593 ERYLI 597 (906)
T ss_pred HHhhh
Confidence 66553
No 285
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.21 E-value=0.92 Score=39.18 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHHHHcCCCC--CCChhcHHHHH-HHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAIIESLTPGS--AKDLVEFQSLM-QHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~-~~l~~~l~~~r~L 76 (505)
++|+||||+++.++. .....=..++.++.... ....+.+.....+.+.+. .....+..+.. +.+........-+
T Consensus 8 ~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (173)
T cd03115 8 LQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDV 85 (173)
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 589999999999987 44333123344443322 122333444444443211 11222333332 3333334444445
Q ss_pred EEEeCCCC
Q 046115 77 LVLDDVWN 84 (505)
Q Consensus 77 lvlDdv~~ 84 (505)
+|+|-...
T Consensus 86 viiDt~g~ 93 (173)
T cd03115 86 VIVDTAGR 93 (173)
T ss_pred EEEECccc
Confidence 66888744
No 286
>PRK08233 hypothetical protein; Provisional
Probab=92.14 E-value=0.4 Score=41.74 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||..++.
T Consensus 11 ~~GsGKtTla~~L~~ 25 (182)
T PRK08233 11 VSGGGKTTLTERLTH 25 (182)
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 287
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.07 E-value=0.0056 Score=53.90 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc
Q 046115 351 NVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 351 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
++......+.|+++.|.+.. +...++.++-|.-|+++ .+.+..+|..++.+..+..+++.+|. ....|
T Consensus 37 ei~~~kr~tvld~~s~r~vn----~~~n~s~~t~~~rl~~s-------knq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p 104 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN----LGKNFSILTRLVRLDLS-------KNQIKFLPKDAKQQRETVNAASHKNN-HSQQP 104 (326)
T ss_pred hhhccceeeeehhhhhHHHh----hccchHHHHHHHHHhcc-------HhhHhhChhhHHHHHHHHHHHhhccc-hhhCC
Confidence 34467888899999887654 44446667778888888 88899999999999999999999888 89999
Q ss_pred hhhhcCCCCcEEecCCCcC
Q 046115 431 ETLCELYNLERLNVDDCQN 449 (505)
Q Consensus 431 ~~~~~l~~L~~L~l~~~~~ 449 (505)
.++++++.++.+++.+|..
T Consensus 105 ~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccccCCcchhhhccCcc
Confidence 9999999999999999774
No 288
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.98 E-value=0.063 Score=47.45 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCC--------CceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF--------EKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f--------~~~~wv~~~~~ 34 (505)
.+|+|||+++..++........| ..++|++...+
T Consensus 40 ~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp CSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 47999999998887632111122 36778887766
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.89 E-value=1 Score=41.04 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=24.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAI 44 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 44 (505)
.+|+||||+|.+++. ...++=..+++++... +..++.+.+
T Consensus 32 ~~G~GKTtl~~~~~~--~~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 32 DESTGKSILSQRLAY--GFLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 379999999977766 2322224566777444 334445544
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.79 E-value=0.87 Score=39.38 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVAR 117 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~ 117 (505)
.-.+.+.+..++-++++|+.... +......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33455556666678899997442 222223333333321 23667888888876554
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.75 E-value=1.4 Score=38.24 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHhcC-ccc--ccC---C--CceEEEEeCCCCCHHHHHHHHHHHcCCCCC------CChhcHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNN-GDV--ERN---F--EKRTWVCVSEPFDEFRIARAIIESLTPGSA------KDLVEFQSLMQHI 66 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~-~~~--~~~---f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~l 66 (505)
..|+|||||.+.+..+ .++ ..+ | ..+.|+. + .+.+..++.... ...+.-+...-.+
T Consensus 29 ~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 29 VSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred CCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 4799999999988632 111 111 1 0122321 1 345565553221 1112222333345
Q ss_pred HHHcCCc--eEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHH
Q 046115 67 EECVAGK--KFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVAR 117 (505)
Q Consensus 67 ~~~l~~~--r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~ 117 (505)
.+.+..+ +-++++|..... +......+...+... ..|..||++|.+.....
T Consensus 99 aral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5555556 678888987442 222333344433332 24667888888876654
No 292
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.74 E-value=2.4 Score=38.92 Aligned_cols=120 Identities=10% Similarity=0.108 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc--hHHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCc
Q 046115 76 LLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK--ETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRE 153 (505)
Q Consensus 76 LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~--~~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~ 153 (505)
++|+-.++.-..+.-+.+..-+..-...|++|+.-.+ +.+...-...-.+.+++.+++|....++.....++...+
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--
Confidence 4445445443333445566666666677887774433 222222122347889999999999999887755554322
Q ss_pred hHHHHHHHHHHHcCCCh-HHHHHHHHHhccC---------CCHHHHHHHHhhhhhh
Q 046115 154 NLEKIGREIVKKCKGLP-LAAKTIASLLRSK---------NTEKEWQNILENEIWE 199 (505)
Q Consensus 154 ~~~~~~~~i~~~~~g~P-lal~~~~~~l~~~---------~~~~~~~~~l~~~~~~ 199 (505)
++.+.+|+++++|.- .||-+.-..-..+ ....+|+..+.+....
T Consensus 208 --~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 208 --KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 678999999998864 3333222211111 1345888877764433
No 293
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.73 E-value=0.38 Score=49.90 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc--CCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV--AGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~Llv 78 (505)
++|.||||||..+++. ..| .++=|+++...+...+-..|...+.... .+ .+++.-||
T Consensus 334 ppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------~l~adsrP~CLV 392 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS----------------VLDADSRPVCLV 392 (877)
T ss_pred CCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc----------------ccccCCCcceEE
Confidence 5899999999999983 223 4556788877776666666555543111 22 25778888
Q ss_pred EeCCCCC
Q 046115 79 LDDVWNE 85 (505)
Q Consensus 79 lDdv~~~ 85 (505)
+|.++-.
T Consensus 393 iDEIDGa 399 (877)
T KOG1969|consen 393 IDEIDGA 399 (877)
T ss_pred EecccCC
Confidence 8988543
No 294
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.62 E-value=0.15 Score=42.99 Aligned_cols=28 Identities=29% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC 30 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~ 30 (505)
++|+||||||+++.. +....-..+.+++
T Consensus 10 lsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 10 LSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 589999999999998 6666666777776
No 295
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.60 E-value=1.4 Score=38.19 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=51.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
..|+|||||++.++.. .. -..+.++++..... .+ ......+.-++..-.+.+.+..++-++++|
T Consensus 33 ~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~i~-----------~~--~q~~~LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 33 PNGTGKTTAVKILAGQ--LI-PNGDNDEWDGITPV-----------YK--PQYIDLSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred CCCChHHHHHHHHHcC--CC-CCCcEEEECCEEEE-----------EE--cccCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3699999999999873 21 12333333210000 00 000002223334444556666677899999
Q ss_pred CCCCC-CccChhHHHHhhcCC--CCCcEEEEEeCchHHHHH
Q 046115 81 DVWNE-DYYKWEPFYKCLKNS--LHESKILITTRKETVARI 118 (505)
Q Consensus 81 dv~~~-~~~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~ 118 (505)
.-... +......+...+... ..+..||++|-+......
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 97442 222233333333322 122568888887665543
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.2 Score=45.27 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCC-ceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAG-KKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~Llvl 79 (505)
++|.|||.+|+++++ +. ..+||.+-.+ +++..-. .+-.+.+..+.+-.+. |-++|.|
T Consensus 219 ppgtgktl~aravan--rt-----dacfirvigs--------elvqkyv-------gegarmvrelf~martkkaciiff 276 (435)
T KOG0729|consen 219 PPGTGKTLCARAVAN--RT-----DACFIRVIGS--------ELVQKYV-------GEGARMVRELFEMARTKKACIIFF 276 (435)
T ss_pred CCCCchhHHHHHHhc--cc-----CceEEeehhH--------HHHHHHh-------hhhHHHHHHHHHHhcccceEEEEe
Confidence 589999999999999 33 3345554331 1222111 0011222333333334 5688888
Q ss_pred eCCCC--------------CCccChhHHHHhhcCCC--CCcEEEEEeCchHH
Q 046115 80 DDVWN--------------EDYYKWEPFYKCLKNSL--HESKILITTRKETV 115 (505)
Q Consensus 80 Ddv~~--------------~~~~~~~~~~~~~~~~~--~~~~iLiTtr~~~~ 115 (505)
|.++. +-+..+-.++..+..++ .+-+||..|..++.
T Consensus 277 deidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 277 DEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred eccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 88732 11112333445555443 34678887766554
No 297
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=2.1 Score=44.18 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=69.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||.||+++++ +....| +.+... .++.... ...............+..++.|.+|
T Consensus 284 pPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 284 PPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKWV------GESEKNIRELFEKARKLAPSIIFID 342 (494)
T ss_pred CCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhcccc------chHHHHHHHHHHHHHcCCCcEEEEE
Confidence 589999999999999 444444 333321 1122111 1111222333333445678999999
Q ss_pred CCCCC------C-----ccChhHHHHhhc--CCCCCcEEEEEeCchHHHHHh----CC-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNE------D-----YYKWEPFYKCLK--NSLHESKILITTRKETVARIM----GS-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~------~-----~~~~~~~~~~~~--~~~~~~~iLiTtr~~~~~~~~----~~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
.++.- . .....+++..+. ....+..||-+|..+...... +. ...+.++.-+.++..+.|..+
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~ 422 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIH 422 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHH
Confidence 98431 1 012344444443 233445566666655443321 12 457888999999999999887
Q ss_pred hh
Q 046115 143 AI 144 (505)
Q Consensus 143 ~~ 144 (505)
..
T Consensus 423 ~~ 424 (494)
T COG0464 423 LR 424 (494)
T ss_pred hc
Confidence 64
No 298
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.39 E-value=0.46 Score=45.50 Aligned_cols=48 Identities=21% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER----NFEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||..++....... .-..++|++....+.... +.++++.++
T Consensus 104 ~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 104 EFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 379999999998875212211 113568999888777765 444555554
No 299
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.23 E-value=0.41 Score=41.18 Aligned_cols=101 Identities=18% Similarity=0.084 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCC-hhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKD-LVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.|+||+.+|+.+.+. -.+.-..-+-|+++.- +.+.+-.++...-....... ....+ .+. . ...--|+||
T Consensus 31 ~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~~~~G----~l~-~--A~~GtL~Ld 100 (168)
T PF00158_consen 31 TGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARSDKKG----LLE-Q--ANGGTLFLD 100 (168)
T ss_dssp TTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSSEBEH----HHH-H--TTTSEEEEE
T ss_pred CCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhhhhhhccccccccccccccCC----cee-e--ccceEEeec
Confidence 699999999999882 2222222334455532 22333333333222111111 11111 111 1 123368899
Q ss_pred CCCCCCccChhHHHHhhcCC-----------CCCcEEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNS-----------LHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~-----------~~~~~iLiTtr~ 112 (505)
+|.+-....-..+...+... ...++||.||..
T Consensus 101 ~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 101 EIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred chhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 99776554445555555432 126788888875
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.21 E-value=0.39 Score=51.62 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC-CceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA-GKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~Llvl 79 (505)
++|+|||.+|+.++. ... ...+.++++...+... ...+ ++.+......+.. ..+...++ ....+|+|
T Consensus 496 P~GvGKT~lAk~LA~--~l~---~~~i~id~se~~~~~~-~~~L---iG~~~gyvg~~~~---g~L~~~v~~~p~sVlll 563 (758)
T PRK11034 496 PTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT-VSRL---IGAPPGYVGFDQG---GLLTDAVIKHPHAVLLL 563 (758)
T ss_pred CCCCCHHHHHHHHHH--HhC---CCcEEeechhhccccc-HHHH---cCCCCCccccccc---chHHHHHHhCCCcEEEe
Confidence 479999999999988 442 2334555554322211 1121 2211110011111 11222232 34579999
Q ss_pred eCCCCCCccChhHHHHhhc
Q 046115 80 DDVWNEDYYKWEPFYKCLK 98 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~ 98 (505)
|++.......+..+...+.
T Consensus 564 DEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 564 DEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred ccHhhhhHHHHHHHHHHHh
Confidence 9997766555666666554
No 301
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=91.09 E-value=17 Score=35.97 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCCCc---cChhHHHHhh--cCCCCCcEEEEEeCchHHH----HHhC--CcceEeCCCCChhhHHHHHHHh
Q 046115 74 KFLLVLDDVWNEDY---YKWEPFYKCL--KNSLHESKILITTRKETVA----RIMG--STHVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 74 r~LlvlDdv~~~~~---~~~~~~~~~~--~~~~~~~~iLiTtr~~~~~----~~~~--~~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
|-++|+||...... ..|+.+.+.- .-..+=.+||+.|-+.... +.++ ..+.+.+...+.+-|..+....
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 67899999854321 1123333221 1123445788888775433 3333 3567889999999999999887
Q ss_pred hhCCCCC------------CC----CchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHH
Q 046115 143 AISGKTI------------GK----RENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKE 188 (505)
Q Consensus 143 ~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 188 (505)
....... .. ...........++.+||=-.-|..+++.++.+.++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 6432110 00 0123445677889999999999999999999875543
No 302
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.00 E-value=1.2 Score=40.49 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
.+|+|||+||.+++. .....-..++|++.....
T Consensus 28 ~~G~GKT~l~~~~~~--~~~~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 28 EPGTGKTIFCLHFAY--KGLRDGDPVIYVTTEESR 60 (229)
T ss_pred CCCCChHHHHHHHHH--HHHhcCCeEEEEEccCCH
Confidence 379999999998876 222334577889875543
No 303
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=90.92 E-value=0.28 Score=45.69 Aligned_cols=15 Identities=33% Similarity=0.169 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+++..
T Consensus 9 ~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 9 LPCSGKTTRAKELKK 23 (270)
T ss_dssp -TTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 489999999999987
No 304
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.87 E-value=2.3 Score=38.71 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Llvl 79 (505)
++|.|||.+|+++++ +.+--| +.+.. ..-|-+..+ +-.+.+..+.++- +.-+|.+.+
T Consensus 159 ppGTGKTm~Akalan--e~kvp~-----l~vka-------t~liGehVG--------dgar~Ihely~rA~~~aPcivFi 216 (368)
T COG1223 159 PPGTGKTMMAKALAN--EAKVPL-----LLVKA-------TELIGEHVG--------DGARRIHELYERARKAAPCIVFI 216 (368)
T ss_pred CCCccHHHHHHHHhc--ccCCce-----EEech-------HHHHHHHhh--------hHHHHHHHHHHHHHhcCCeEEEe
Confidence 579999999999999 332222 22221 111111221 2223334444443 335899999
Q ss_pred eCCCCCC----c----cC----hhHHHHhhc--CCCCCcEEEEEeCchHHHHH-hCC--cceEeCCCCChhhHHHHHHHh
Q 046115 80 DDVWNED----Y----YK----WEPFYKCLK--NSLHESKILITTRKETVARI-MGS--THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 80 Ddv~~~~----~----~~----~~~~~~~~~--~~~~~~~iLiTtr~~~~~~~-~~~--~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
|.++... . .+ ...++..+. ..+.|...|-.|..++++.. +.+ ...++..--+++|-.+++...
T Consensus 217 DE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y 296 (368)
T COG1223 217 DELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYY 296 (368)
T ss_pred hhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHH
Confidence 9873311 0 11 122222222 23457667777776665442 222 335566666788888888877
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+..-.. + .+...+.+++..+|+.
T Consensus 297 ~k~~Pl---p--v~~~~~~~~~~t~g~S 319 (368)
T COG1223 297 AKKFPL---P--VDADLRYLAAKTKGMS 319 (368)
T ss_pred HHhCCC---c--cccCHHHHHHHhCCCC
Confidence 632221 1 1122556666666654
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.84 E-value=0.62 Score=42.70 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
.+|+|||+||.+++. +..++-..++|++...+
T Consensus 29 ~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 29 GPGTGKSIFSQQFLW--NGLQMGEPGIYVALEEH 60 (237)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeCC
Confidence 379999999998876 33344567888887664
No 306
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.68 E-value=2.8 Score=44.57 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.++. +....| +.++.+. +..... + .......+.+.......+++|++|
T Consensus 193 ~~G~GKt~~~~~~a~--~~~~~f---~~is~~~----------~~~~~~-g-----~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 193 PPGTGKTLLAKAIAG--EAKVPF---FTISGSD----------FVEMFV-G-----VGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred CCCCCHHHHHHHHHH--HcCCCE---EEEehHH----------hHHhhh-c-----ccHHHHHHHHHHHHhcCCcEEEeh
Confidence 479999999999998 443332 2222221 011110 0 011122222333334467899999
Q ss_pred CCCCCC----------ccCh----hHHHHhhcCC--CCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED----------YYKW----EPFYKCLKNS--LHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~----------~~~~----~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.-. .... ..++..+... ..+.-+|.||..++... .. +. ...+.++..+.++-.+++
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il 331 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 331 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHH
Confidence 984420 0011 2222222222 23445556777655322 11 12 357778888888888888
Q ss_pred HHhh
Q 046115 140 QSLA 143 (505)
Q Consensus 140 ~~~~ 143 (505)
..+.
T Consensus 332 ~~~~ 335 (644)
T PRK10733 332 KVHM 335 (644)
T ss_pred HHHh
Confidence 7765
No 307
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.62 E-value=0.15 Score=41.42 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+++..
T Consensus 6 ~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 6 IPGSGKTTIAKELAE 20 (129)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.54 E-value=0.38 Score=41.77 Aligned_cols=16 Identities=38% Similarity=0.384 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
.+|+||||+|+.++..
T Consensus 8 ~pGaGK~T~A~~La~~ 23 (178)
T COG0563 8 PPGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4899999999999983
No 309
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.50 E-value=0.32 Score=46.28 Aligned_cols=74 Identities=23% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKFL 76 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~L 76 (505)
.|+||||||.++.. +..+.-..++||+....++.. .+..++...+ ..+...++......+.++ +..-+
T Consensus 62 ~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~l 134 (322)
T PF00154_consen 62 ESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDL 134 (322)
T ss_dssp TTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESE
T ss_pred CCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccE
Confidence 68999999998887 454444567799998876653 3344443221 112333444455555443 34568
Q ss_pred EEEeCC
Q 046115 77 LVLDDV 82 (505)
Q Consensus 77 lvlDdv 82 (505)
+|+|.|
T Consensus 135 VVvDSv 140 (322)
T PF00154_consen 135 VVVDSV 140 (322)
T ss_dssp EEEE-C
T ss_pred EEEecC
Confidence 899998
No 310
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=3 Score=37.27 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHHHhCCc
Q 046115 62 LMQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVARIMGST 122 (505)
Q Consensus 62 ~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~~~~~~ 122 (505)
-...+.+.+-=++-+.|||..++- +...+..+...+... ..++.+||.|-.+.++..+...
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 334455555556679999998663 222333333333321 3455677777777777766543
No 311
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.46 E-value=1.2 Score=36.12 Aligned_cols=117 Identities=12% Similarity=0.231 Sum_probs=55.2
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
|.++++|+.+.+... +... -...|..+.+|+.+.+. ++ +..++ ..+..+..++.+.+.+ . +..++
T Consensus 8 F~~~~~l~~i~~~~~-~~~I---~~~~F~~~~~l~~i~~~-------~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKI---GENAFSNCTSLKSINFP-------NN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETST---EE----TTTTTT-TT-SEEEES-------ST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECCC-eeEe---Chhhccccccccccccc-------cc-ccccceeeeecccccccccccc-c-ccccc
Confidence 457778888887642 2221 33346667788888886 43 44443 3456676788888865 3 44454
Q ss_pred h-hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccc-cccCCccC
Q 046115 431 E-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPA-GIGELIRL 487 (505)
Q Consensus 431 ~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L 487 (505)
. .+..+.+|+.+.+..+ +..++.. +.+. +|+.+.+..+ ...++. .|.++++|
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 4 3456888888888653 5555544 5555 7888877653 233333 35666555
No 312
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=1.8 Score=45.44 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||-+|++|+. +..-. |+++..+ ++++.-- .++.+...+...+.-...+|.|.||
T Consensus 713 PPGTGKTLlAKAVAT--EcsL~-----FlSVKGP--------ELLNMYV------GqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVAT--ECSLN-----FLSVKGP--------ELLNMYV------GQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred CCCCchHHHHHHHHh--hceee-----EEeecCH--------HHHHHHh------cchHHHHHHHHHHhhccCCeEEEec
Confidence 589999999999998 33333 4666552 3333222 1222333444444556689999999
Q ss_pred CCCC
Q 046115 81 DVWN 84 (505)
Q Consensus 81 dv~~ 84 (505)
.+++
T Consensus 772 ELDS 775 (953)
T KOG0736|consen 772 ELDS 775 (953)
T ss_pred cccc
Confidence 9855
No 313
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.35 E-value=2.2 Score=39.01 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=37.1
Q ss_pred hcHHHHHHHHHHHcCCceEEEEEeCCCCC-C---ccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 57 VEFQSLMQHIEECVAGKKFLLVLDDVWNE-D---YYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 57 ~~~~~~~~~l~~~l~~~r~LlvlDdv~~~-~---~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.-+...-.+.+.|.+.+=||+||.-... + ...+-.++..+... |+.||++|-|-.....
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHh
Confidence 33344455677888888999999985331 2 22223333333333 8899999998665543
No 314
>PRK14974 cell division protein FtsY; Provisional
Probab=90.28 E-value=1.4 Score=42.42 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCC--ChhcHHH-HHHHHHHHcCCceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEP-FDEFRIARAIIESLTPGSAK--DLVEFQS-LMQHIEECVAGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~--~~~~~~~-~~~~l~~~l~~~r~ 75 (505)
++|+||||++..++. ....+ + .++.++.... ....+.++.....++.+... ...+... ..+.+........-
T Consensus 148 ~~GvGKTTtiakLA~--~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~D 224 (336)
T PRK14974 148 VNGTGKTTTIAKLAY--YLKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGID 224 (336)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999888886 44332 3 2334442211 12334455666666643221 1122222 22333332222233
Q ss_pred EEEEeCCCCC
Q 046115 76 LLVLDDVWNE 85 (505)
Q Consensus 76 LlvlDdv~~~ 85 (505)
++++|-....
T Consensus 225 vVLIDTaGr~ 234 (336)
T PRK14974 225 VVLIDTAGRM 234 (336)
T ss_pred EEEEECCCcc
Confidence 8999998654
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.12 E-value=0.099 Score=42.09 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFE 24 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~ 24 (505)
+|+|||++|+.++. .+...|.
T Consensus 8 PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 8 PGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp --HHHHHHHHHHHH--HTT--EE
T ss_pred CccHHHHHHHHHHH--HcCCcee
Confidence 79999999999998 6666664
No 316
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.10 E-value=0.8 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHH
Q 046115 64 QHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVAR 117 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~ 117 (505)
-.+.+.+..++-++++|+.... +......+.+.+... ..|..||++|.+.....
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 3466666778889999997442 222223333333322 23567888888876554
No 317
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.00 E-value=2.4 Score=37.86 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=37.5
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcC-CCCCcEEEEEeCchHHHHHhCCcceEeCCCCChh
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKN-SLHESKILITTRKETVARIMGSTHVISVNVLSEM 133 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iLiTtr~~~~~~~~~~~~~~~l~~l~~~ 133 (505)
+.+.+..++-++++|.-... +......+...+.. ...|..||++|.+...... ..++.++.++.+
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~~ 204 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAAE 204 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccCC
Confidence 44555566779999997442 22223334444432 1246678999888665443 456777665443
No 318
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.90 E-value=0.92 Score=39.43 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CC-CcEEEEEeCchHHHH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LH-ESKILITTRKETVAR 117 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~-~~~iLiTtr~~~~~~ 117 (505)
.-.+.+.+..++=++++|.-... +......+...+... .. +..||++|-+.....
T Consensus 108 r~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 33455566667788999997442 222333444444332 12 567888888766554
No 319
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=89.86 E-value=1.1 Score=40.74 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFR 39 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 39 (505)
||+||||+|..++. .....=..++-++...+.+...
T Consensus 11 GGvGKTT~a~nLA~--~la~~G~~VlliD~DpQ~s~~~ 46 (231)
T PRK13849 11 GGAGKTTALMGLCA--ALASDGKRVALFEADENRPLTR 46 (231)
T ss_pred CCccHHHHHHHHHH--HHHhCCCcEEEEeCCCCCCHHH
Confidence 89999999999887 4443323455677666555443
No 320
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=89.76 E-value=3.5 Score=35.73 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=39.6
Q ss_pred ChhcHHHHHHHHHHHcCCceEEEEEeCCC-CCCccChhHHHHhhcC-CCCCcEEEEEeCchHHHHHhC
Q 046115 55 DLVEFQSLMQHIEECVAGKKFLLVLDDVW-NEDYYKWEPFYKCLKN-SLHESKILITTRKETVARIMG 120 (505)
Q Consensus 55 ~~~~~~~~~~~l~~~l~~~r~LlvlDdv~-~~~~~~~~~~~~~~~~-~~~~~~iLiTtr~~~~~~~~~ 120 (505)
+.+.-++..-.+.+.+-+++-+|+-|.-. +-+...-..+...+.. +..|..|++.|-+..+...+.
T Consensus 137 ~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444555556677777888888888641 1111111222333332 346889999999998887654
No 321
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.75 E-value=0.35 Score=42.93 Aligned_cols=101 Identities=10% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH-HHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF-RIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
..|+||||++..++. .........++. +..+.... .-...++.+-. ...+.....+.+...+....=.|++
T Consensus 9 ptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aLr~~pd~ii~ 80 (198)
T cd01131 9 PTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIEFVHESKRSLINQRE-----VGLDTLSFENALKAALRQDPDVILV 80 (198)
T ss_pred CCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCccccccCccceeeecc-----cCCCccCHHHHHHHHhcCCcCEEEE
Confidence 369999999998887 444343334333 22221110 00000111100 0111122334566666666779999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET 114 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~ 114 (505)
|.+.+.. .+....... ..|..++.|+-...
T Consensus 81 gEird~e--~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 81 GEMRDLE--TIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred cCCCCHH--HHHHHHHHH---HcCCEEEEEecCCc
Confidence 9996543 233323322 24555666665443
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.69 E-value=1.8 Score=43.40 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHHHHcCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAIIESLTP 50 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~ 50 (505)
.+|+||||.|..++. ....+-..+.-+++... +...+.+..+..+++.
T Consensus 103 ~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 103 LQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 479999999999987 44433123334443321 1234555666666653
No 323
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.62 E-value=1.9 Score=42.17 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=49.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC-CceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA-GKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~Llv 78 (505)
.+|+||||++..++. ....+=..+..++..... ...+.+....+.++.+.. ...+.....+.+...-. .+.=+++
T Consensus 249 ptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~lk~~~~~DvVL 325 (436)
T PRK11889 249 PTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKEEARVDYIL 325 (436)
T ss_pred CCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHHHhccCCCEEE
Confidence 479999999999987 443332234455543322 233334444444442221 11233333333333221 1235778
Q ss_pred EeCCCCCC--ccChhHHHHhhcCCCCCcEEEE
Q 046115 79 LDDVWNED--YYKWEPFYKCLKNSLHESKILI 108 (505)
Q Consensus 79 lDdv~~~~--~~~~~~~~~~~~~~~~~~~iLi 108 (505)
+|-..+.. ...+..+...+....+...+||
T Consensus 326 IDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 326 IDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred EeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 88875532 2224444444433333333444
No 324
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.60 E-value=1.8 Score=41.74 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHH-HHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARA-IIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.|+||+++|+.+... -...-...+-|++.... ...+.. +...-. +........ ....+. ....--|+||
T Consensus 31 ~GtGK~~lAr~iH~~--s~r~~~pfv~vnc~~~~--~~~l~~~lfG~~~-g~~~ga~~~--~~G~~~---~a~gGtL~Ld 100 (329)
T TIGR02974 31 RGTGKELIAARLHYL--SKRWQGPLVKLNCAALS--ENLLDSELFGHEA-GAFTGAQKR--HQGRFE---RADGGTLFLD 100 (329)
T ss_pred CCChHHHHHHHHHHh--cCccCCCeEEEeCCCCC--hHHHHHHHhcccc-ccccCcccc--cCCchh---hCCCCEEEeC
Confidence 699999999998762 22121233445665432 222222 211110 000000000 000011 1223468999
Q ss_pred CCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
+|..-.......+...+.... ...+||.||..
T Consensus 101 ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 101 ELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 997766555556666554321 34577777753
No 325
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=89.43 E-value=1.8 Score=40.19 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhcCccc--ccCCCceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDV--ERNFEKRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+..+++.... +++-+.++++-+++.. +..++..++..
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 689999999998874221 1223567788777654 44555555544
No 326
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=89.38 E-value=4.9 Score=37.75 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHH-hCCcceEeCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARI-MGSTHVISVNVL 130 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~-~~~~~~~~l~~l 130 (505)
+++-++|+|+++.........+++.+.....++.+|++|.++ .+... ......+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 456688999998887778888999888877777766666663 33322 222345556544
No 327
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.35 E-value=5.3 Score=38.19 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
.+|+|||++|+.++. .....| +.|.+....+.
T Consensus 72 ~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~ 103 (327)
T TIGR01650 72 YHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSR 103 (327)
T ss_pred CCCChHHHHHHHHHH--HHCCCe---EEEEecCCCCh
Confidence 479999999999998 443332 24444444333
No 328
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=89.32 E-value=0.76 Score=45.77 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHhcCccc-----c----c--CCCceEEEEeCCCCCHHHHHHHHHHHcC-CCC------CCChhcHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDV-----E----R--NFEKRTWVCVSEPFDEFRIARAIIESLT-PGS------AKDLVEFQSLM 63 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~-----~----~--~f~~~~wv~~~~~~~~~~~~~~l~~~l~-~~~------~~~~~~~~~~~ 63 (505)
+|+|||+|+..+++.... . + .=..+++.-+++..+..+.+...+.+-+ ... ..+.....+..
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 699999999999874321 0 0 0014557777777666665655555443 110 11111111111
Q ss_pred -----HHHHHHc---CCceEEEEEeCCCC
Q 046115 64 -----QHIEECV---AGKKFLLVLDDVWN 84 (505)
Q Consensus 64 -----~~l~~~l---~~~r~LlvlDdv~~ 84 (505)
-.+.+.+ +++++|+++||+.+
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1123333 46899999999833
No 329
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=89.31 E-value=0.37 Score=52.88 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=65.3
Q ss_pred HHHcCCceEEEEEeCCCCCCccC----hhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeCCCCChhhHHHHHH--
Q 046115 67 EECVAGKKFLLVLDDVWNEDYYK----WEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQ-- 140 (505)
Q Consensus 67 ~~~l~~~r~LlvlDdv~~~~~~~----~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l~~l~~~ea~~Lf~-- 140 (505)
.+.++..++++++|.++...... ...+...++.. +.+++|+|+|.............+++..+.++.-.....
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~-~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY-PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc-cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 56778899999999985533222 22233333333 467899999875444333334455555555554332221
Q ss_pred ------HhhhCCCCCC---CCchHHHHHHHHHHHcCCChHHHHHHHHHhccC-----CCHHHHHHHHhh
Q 046115 141 ------SLAISGKTIG---KRENLEKIGREIVKKCKGLPLAAKTIASLLRSK-----NTEKEWQNILEN 195 (505)
Q Consensus 141 ------~~~~~~~~~~---~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-----~~~~~~~~~l~~ 195 (505)
...+...... ....+..-...-++.....|++|.+.+...... ...+.|+..++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1111111100 000011112233344488899999998655421 145556655554
No 330
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=3.4 Score=42.66 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCc-eEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGK-KFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-r~Llvl 79 (505)
++|.|||-+++++++ +...+ +-... ..+++..+. .+........+.+..+.+ +..|.+
T Consensus 226 ppg~Gkt~l~~aVa~--e~~a~------~~~i~-------~peli~k~~------gEte~~LR~~f~~a~k~~~psii~I 284 (693)
T KOG0730|consen 226 PPGTGKTFLVRAVAN--EYGAF------LFLIN-------GPELISKFP------GETESNLRKAFAEALKFQVPSIIFI 284 (693)
T ss_pred CCCCChHHHHHHHHH--HhCce------eEecc-------cHHHHHhcc------cchHHHHHHHHHHHhccCCCeeEeH
Confidence 479999999999999 33321 11111 123333333 122233455556666677 888888
Q ss_pred eCCCCCC----------ccChhHHHHhhcCCC--CCcEEEEEeCchHHHH-HhC--C-cceEeCCCCChhhHHHHHHHhh
Q 046115 80 DDVWNED----------YYKWEPFYKCLKNSL--HESKILITTRKETVAR-IMG--S-THVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 80 Ddv~~~~----------~~~~~~~~~~~~~~~--~~~~iLiTtr~~~~~~-~~~--~-~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
|++.... .....++...+...+ .+.-||-+|+.++... ... . .+.+.++..+..+-.++++...
T Consensus 285 dEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~ 364 (693)
T KOG0730|consen 285 DELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLT 364 (693)
T ss_pred HhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHH
Confidence 8874421 111233344333433 3444555676654322 111 2 3467777777777777776654
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
..-+. ..+.++. .++..+.|+-
T Consensus 365 k~~~~-~~~~~l~----~iA~~thGyv 386 (693)
T KOG0730|consen 365 KKMNL-LSDVDLE----DIAVSTHGYV 386 (693)
T ss_pred HhcCC-cchhhHH----HHHHHccchh
Confidence 32222 2234444 4555555544
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.22 E-value=0.4 Score=48.39 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
+|+|||||+.+++. ....+-..++|++..+.
T Consensus 89 pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 89 PGIGKSTLLLQVAA--RLAAAGGKVLYVSGEES 119 (446)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEEcccc
Confidence 79999999999987 44433346778887654
No 332
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.21 E-value=0.72 Score=42.64 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|++++.
T Consensus 7 ~pGSGKST~a~~La~ 21 (249)
T TIGR03574 7 LPGVGKSTFSKELAK 21 (249)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 333
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.10 E-value=1.7 Score=39.11 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT 27 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~ 27 (505)
-|+|||.|.+++.+ ++....--.+
T Consensus 94 RGtGKSSLVKA~~~--e~~~~glrLV 117 (287)
T COG2607 94 RGTGKSSLVKALLN--EYADEGLRLV 117 (287)
T ss_pred CCCChHHHHHHHHH--HHHhcCCeEE
Confidence 48999999999988 6666554433
No 334
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.09 E-value=0.34 Score=26.74 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=11.7
Q ss_pred CCCcEEecCCCcCccccchh
Q 046115 437 YNLERLNVDDCQNLRELPRG 456 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~ 456 (505)
.+|+.|+|++|. +..+|++
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666665 6666654
No 335
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.09 E-value=0.34 Score=26.74 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=11.7
Q ss_pred CCCcEEecCCCcCccccchh
Q 046115 437 YNLERLNVDDCQNLRELPRG 456 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~ 456 (505)
.+|+.|+|++|. +..+|++
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666665 6666654
No 336
>PHA02244 ATPase-like protein
Probab=89.09 E-value=1.2 Score=43.17 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||+||++++.
T Consensus 127 ppGtGKTtLA~aLA~ 141 (383)
T PHA02244 127 GAGSGKNHIAEQIAE 141 (383)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 337
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=89.08 E-value=0.4 Score=42.22 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ....+-..++-++........
T Consensus 8 GG~GKTt~a~~la~--~la~~g~~VlliD~D~~~~~~ 42 (195)
T PF01656_consen 8 GGVGKTTIAANLAQ--ALARKGKKVLLIDLDPQAPNL 42 (195)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTS-EEEEEESTTSHHH
T ss_pred CCccHHHHHHHHHh--ccccccccccccccCcccccH
Confidence 89999999999988 565554566667775544433
No 338
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.04 E-value=0.52 Score=47.60 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
+|+|||||+.+++. ....+-..++|++..++
T Consensus 103 pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 103 PGIGKSTLLLQVAC--QLAKNQMKVLYVSGEES 133 (454)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCcEEEEECcCC
Confidence 79999999999977 44333345778887654
No 339
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=89.03 E-value=0.91 Score=43.72 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.+..
T Consensus 7 l~GaGKST~~~~l~~ 21 (340)
T TIGR03575 7 LPAAGKSTLARSLSA 21 (340)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999986
No 340
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=15 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|.|||++..++|+
T Consensus 243 PPGTGKSS~IaAmAn 257 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMAN 257 (457)
T ss_pred CCCCCHHHHHHHHHh
Confidence 689999999999998
No 341
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.96 E-value=0.3 Score=40.78 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FE 24 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~ 24 (505)
|+|+||||++..+++ ..+.+ |.
T Consensus 13 ~PGvGKtTl~~ki~e--~L~~~g~k 35 (179)
T COG1618 13 RPGVGKTTLVLKIAE--KLREKGYK 35 (179)
T ss_pred CCCccHHHHHHHHHH--HHHhcCce
Confidence 689999999999998 55444 53
No 342
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.94 E-value=0.26 Score=41.00 Aligned_cols=15 Identities=40% Similarity=0.372 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 7 ~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAK 21 (143)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999986
No 343
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=8.3 Score=34.89 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=19.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
++|.|||.||+++++ +....|+.++.
T Consensus 189 ppgtGktLlaraVah-------ht~c~firvsg 214 (404)
T KOG0728|consen 189 PPGTGKTLLARAVAH-------HTDCTFIRVSG 214 (404)
T ss_pred CCCCchhHHHHHHHh-------hcceEEEEech
Confidence 479999999999998 33444666665
No 344
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.80 E-value=1.5 Score=44.22 Aligned_cols=67 Identities=12% Similarity=0.246 Sum_probs=38.8
Q ss_pred EEEEeCCCCCCccChhHHHHhhcCCC---------CCcEEEEEeCchHHH------HHhCC-cceEeCCCCChhhH-HHH
Q 046115 76 LLVLDDVWNEDYYKWEPFYKCLKNSL---------HESKILITTRKETVA------RIMGS-THVISVNVLSEMEC-WSV 138 (505)
Q Consensus 76 LlvlDdv~~~~~~~~~~~~~~~~~~~---------~~~~iLiTtr~~~~~------~~~~~-~~~~~l~~l~~~ea-~~L 138 (505)
++++|+++.........+...+.... -..++++++.++... ..... ...+.+++++.++. .++
T Consensus 110 lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~l 189 (498)
T PRK13531 110 IVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSM 189 (498)
T ss_pred EEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHH
Confidence 89999998766655666666663221 123466655553221 11222 23577888986554 677
Q ss_pred HHHh
Q 046115 139 FQSL 142 (505)
Q Consensus 139 f~~~ 142 (505)
+...
T Consensus 190 L~~~ 193 (498)
T PRK13531 190 LTSQ 193 (498)
T ss_pred HHcc
Confidence 7653
No 345
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=88.78 E-value=1.7 Score=45.05 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=42.2
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCC----------------------------CCCcEEEE-EeCchH-HHHHh-CC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNS----------------------------LHESKILI-TTRKET-VARIM-GS 121 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~----------------------------~~~~~iLi-Ttr~~~-~~~~~-~~ 121 (505)
..-.|++|++..........+...+... ....++|. ||+++. +.... ..
T Consensus 175 ~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR 254 (531)
T TIGR02902 175 HGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSR 254 (531)
T ss_pred CCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhh
Confidence 4468999999776655566666544321 11235554 455432 11111 12
Q ss_pred cceEeCCCCChhhHHHHHHHhh
Q 046115 122 THVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 122 ~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
...+.+.+++.+|-.+++...+
T Consensus 255 ~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 255 CVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred hheeeCCCCCHHHHHHHHHHHH
Confidence 3467788999998888887765
No 346
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=88.68 E-value=0.31 Score=40.34 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCC-CCCcEEEEEeCch
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNS-LHESKILITTRKE 113 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~-~~~~~iLiTtr~~ 113 (505)
+.--|+++|++.-.......+...+... ....++|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 3345779999776655556666666543 5678999998853
No 347
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.52 E-value=4.3 Score=36.58 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.+.+..++-++++|+.... +......+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44445556678999997542 222233344444433334678888888765543
No 348
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.50 E-value=3.6 Score=35.51 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE--EEEeCCCCCHHHHHHHH---HHHcCCCC------CC---ChhcHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT--WVCVSEPFDEFRIARAI---IESLTPGS------AK---DLVEFQSLMQHIE 67 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~l---~~~l~~~~------~~---~~~~~~~~~~~l~ 67 (505)
.|=||||=|--.+-. .+...+...+ |+.-.-.......+..+ +...+.+. .. +........+...
T Consensus 37 ~GKGKTTAAlG~alR-a~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~a~ 115 (198)
T COG2109 37 NGKGKTTAALGLALR-ALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADIAAAKAGWEHAK 115 (198)
T ss_pred CCCChhHHHHHHHHH-HhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHHHHHHHHHHHHH
Confidence 488999998544431 3334454332 77665444444444443 11111111 10 1122233444555
Q ss_pred HHcCCce-EEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCc
Q 046115 68 ECVAGKK-FLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 68 ~~l~~~r-~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
+.+.+.+ =|+|||.+.- -....++.+...+........|++|-|.
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ 164 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRG 164 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCC
Confidence 5666654 4889999722 2334667778877777778899999997
No 349
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=88.47 E-value=1.5 Score=43.98 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceEEEEeCCCC-CHHHHHHHHHHHcCCC------CCCChhcHHHH-----HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEPF-DEFRIARAIIESLTPG------SAKDLVEFQSL-----MQHIEE 68 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~------~~~~~~~~~~~-----~~~l~~ 68 (505)
+|+|||+|+.++++ ...+ +-+.++++-+++.. +..++...+...-... ...+.....+. .-.+.+
T Consensus 152 ~G~GKt~Ll~~~~~--~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE 229 (461)
T PRK12597 152 AGVGKTVLMMELIF--NISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229 (461)
T ss_pred CCCChhHHHHHHHH--HHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999887 4443 33566677666543 4455555554421100 01111111111 111222
Q ss_pred Hc---CCceEEEEEeCCCC
Q 046115 69 CV---AGKKFLLVLDDVWN 84 (505)
Q Consensus 69 ~l---~~~r~LlvlDdv~~ 84 (505)
.+ .++++|+++||+.+
T Consensus 230 yfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 230 YLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHhcCCceEEEeccchH
Confidence 33 37899999999933
No 350
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=88.45 E-value=0.77 Score=41.15 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHHHH--cC-----CCCCCChhcHH--------HHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAIIES--LT-----PGSAKDLVEFQ--------SLMQH 65 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~--l~-----~~~~~~~~~~~--------~~~~~ 65 (505)
+|+|||+|+.++++ ... -+.++++-+++. .+..++..++... +. ....++..... ...+.
T Consensus 24 ~g~GKt~Ll~~i~~--~~~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 24 AGVGKTVLLQEIAN--NQD--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp TTSSHHHHHHHHHH--HCT--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHh--ccc--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 69999999999988 332 244577777765 3455555555432 10 01111111111 11122
Q ss_pred HHHHcCCceEEEEEeCC
Q 046115 66 IEECVAGKKFLLVLDDV 82 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv 82 (505)
++. .++++|+++||+
T Consensus 100 frd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 100 FRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHH--TTSEEEEEEETH
T ss_pred Hhh--cCCceeehhhhh
Confidence 332 689999999998
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.41 E-value=1.3 Score=37.59 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=55.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|.|||||++.++. ... ...+.++++........ .......+....+ .+.-+...-.+...+...+-++++|.
T Consensus 34 nGsGKStll~~l~g--~~~-~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 34 NGSGKSTLLRAIAG--LLK-PTSGEILIDGKDIAKLP--LEELRRRIGYVPQ--LSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred CCCCHHHHHHHHhC--CCC-CCccEEEECCEEcccCC--HHHHHhceEEEee--CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 69999999999988 332 24555555432211100 0011111110000 22223333345556666678999999
Q ss_pred CCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHHH
Q 046115 82 VWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVARI 118 (505)
Q Consensus 82 v~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~~ 118 (505)
.... +......+...+... ..+..++++|-+......
T Consensus 107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8542 222233333333321 124678888888766554
No 352
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=2.3 Score=42.70 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
++|.|||-||++++..
T Consensus 345 PPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGE 360 (752)
T ss_pred CCCCchhHHHHHhhcc
Confidence 5899999999999983
No 353
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=88.34 E-value=0.6 Score=40.92 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=31.2
Q ss_pred HHHHHcCC--ceEEEEEeCCCCCCccC-h----hHHHHhhcCCCCCcEEEEEeCchHHHHHh
Q 046115 65 HIEECVAG--KKFLLVLDDVWNEDYYK-W----EPFYKCLKNSLHESKILITTRKETVARIM 119 (505)
Q Consensus 65 ~l~~~l~~--~r~LlvlDdv~~~~~~~-~----~~~~~~~~~~~~~~~iLiTtr~~~~~~~~ 119 (505)
++...+.. ++-++++|......+.. - ..+...+.. ..++.++++|-..++...+
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 34444433 78899999985543211 1 222333322 2367899999987766544
No 354
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.32 E-value=1.6 Score=40.78 Aligned_cols=108 Identities=15% Similarity=0.010 Sum_probs=52.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCC------CCC-CChhcHHHHHHHHHHHcCCc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTP------GSA-KDLVEFQSLMQHIEECVAGK 73 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~------~~~-~~~~~~~~~~~~l~~~l~~~ 73 (505)
..|+|||||.+.++. .+. ...+.++++-..-... +...++...... ... ..............-.....
T Consensus 119 ~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~ 194 (270)
T TIGR02858 119 PPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMS 194 (270)
T ss_pred CCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCC
Confidence 379999999999998 443 2345555532111100 011222222210 000 00111111111111222246
Q ss_pred eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 74 KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 74 r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
+-++++|.+.... .+..+...+. .|..+|+||-+..+..
T Consensus 195 P~villDE~~~~e--~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 195 PDVIVVDEIGREE--DVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred CCEEEEeCCCcHH--HHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 7799999985432 3444555442 4778999998765533
No 355
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.32 E-value=0.91 Score=41.44 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCCCCCceEEEecCCCccc-cccchhHHhhcCcccceEEecccccCCccccccccCc--------------cccCCCCcc
Q 046115 352 VTGLRGLRSLLVKSDEYSW-SSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT--------------NIEKLLHLK 416 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~--------------~~~~l~~L~ 416 (505)
+.+|+.|+..+|+.|-+.. .+..+..++.+-+.|..|.|+ |+.++.+.. ....-+.|+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~-------NnGlGp~aG~rigkal~~la~nKKaa~kp~Le 160 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN-------NNGLGPIAGGRIGKALFHLAYNKKAADKPKLE 160 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee-------cCCCCccchhHHHHHHHHHHHHhhhccCCCce
Confidence 3477888888888877643 223344556677778888887 444433221 123445666
Q ss_pred eeeccCCccccccchh-----hhcCCCCcEEecCCCcCcccc------chhccccccCceeecCCCc
Q 046115 417 YLNLKGQKKIEKLPET-----LCELYNLERLNVDDCQNLREL------PRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 417 ~L~l~~~~~~~~lp~~-----~~~l~~L~~L~l~~~~~~~~l------p~~~~~l~~L~~L~l~~~~ 472 (505)
+.....|+ +...|.. +..=.+|.++.+..|. ++.- -.++..+.+|+.|++..|.
T Consensus 161 ~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 161 VVICGRNR-LENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred EEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 66666666 4433321 1111355555555544 2110 0123444555555555554
No 356
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=88.30 E-value=0.31 Score=34.72 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+.+.+
T Consensus 7 ~~gsGKst~~~~l~~ 21 (69)
T cd02019 7 GSGSGKSTVAKKLAE 21 (69)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999998
No 357
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.28 E-value=1.4 Score=41.01 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=23.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
.+|+|||++|.+++. ...++=..+++++...+.
T Consensus 44 ~pGtGKT~l~~qf~~--~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 44 VSDTGKSLMVEQFAV--TQASRGNPVLFVTVESPA 76 (259)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCcEEEEEecCCc
Confidence 479999999999876 333333467788887543
No 358
>PRK03839 putative kinase; Provisional
Probab=88.26 E-value=0.27 Score=42.83 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
|+|+||||+|+.+++
T Consensus 8 ~pGsGKsT~~~~La~ 22 (180)
T PRK03839 8 TPGVGKTTVSKLLAE 22 (180)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999998
No 359
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.21 E-value=1.6 Score=40.81 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCC--CChhcHHH-HHHHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGSA--KDLVEFQS-LMQHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~~~~~-~~~~l~~~l~~~r~L 76 (505)
++|+||||.+..++. .....-..+..++..... ...+.+....+..+.+.. ....+... ....+.....+..=+
T Consensus 80 ~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ 157 (272)
T TIGR00064 80 VNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDV 157 (272)
T ss_pred CCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 489999999999987 444332345566644321 123444555555552211 11122222 223344433444568
Q ss_pred EEEeCCCC
Q 046115 77 LVLDDVWN 84 (505)
Q Consensus 77 lvlDdv~~ 84 (505)
+++|-...
T Consensus 158 ViIDT~G~ 165 (272)
T TIGR00064 158 VLIDTAGR 165 (272)
T ss_pred EEEeCCCC
Confidence 88898754
No 360
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=2.3 Score=45.38 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHc-CCceEEEEEeCCCCC----C----ccChhHHHHhhcCCCCCcEEEEEeCchH---HHH---HhCCc
Q 046115 58 EFQSLMQHIEECV-AGKKFLLVLDDVWNE----D----YYKWEPFYKCLKNSLHESKILITTRKET---VAR---IMGST 122 (505)
Q Consensus 58 ~~~~~~~~l~~~l-~~~r~LlvlDdv~~~----~----~~~~~~~~~~~~~~~~~~~iLiTtr~~~---~~~---~~~~~ 122 (505)
+.++....+.+.+ +.+++.|.+|.+... . ..+...++++....+.--.|=.||-++. +.+ ....+
T Consensus 246 eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRF 325 (786)
T COG0542 246 EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRF 325 (786)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcC
Confidence 3444444444444 345899999997331 1 2456677777777776666778887642 222 12347
Q ss_pred ceEeCCCCChhhHHHHHHHhh
Q 046115 123 HVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 123 ~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+.+.+...+.++++.++....
T Consensus 326 Q~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 326 QKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred ceeeCCCCCHHHHHHHHHHHH
Confidence 789999999999999997654
No 361
>PRK12678 transcription termination factor Rho; Provisional
Probab=88.19 E-value=1.1 Score=45.91 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEE-EEeCCCCC-HHHHHHHHHHHcCCCCCCChhcHHH----HHHHHHHHc--C
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTW-VCVSEPFD-EFRIARAIIESLTPGSAKDLVEFQS----LMQHIEECV--A 71 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~w-v~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~l~~~l--~ 71 (505)
.+|+|||+|+..+++ .+..+. +..++ +-+++-+. ..++.+.+-.++-............ ..-.+.+.+ .
T Consensus 424 pp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~ 501 (672)
T PRK12678 424 PPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEL 501 (672)
T ss_pred CCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 379999999999998 564433 33333 33444332 3333222211111111222211111 111122333 5
Q ss_pred CceEEEEEeCCCC
Q 046115 72 GKKFLLVLDDVWN 84 (505)
Q Consensus 72 ~~r~LlvlDdv~~ 84 (505)
++.+||++|++..
T Consensus 502 G~dVlillDSlTR 514 (672)
T PRK12678 502 GKDVVVLLDSITR 514 (672)
T ss_pred CCCEEEEEeCchH
Confidence 7899999999943
No 362
>PTZ00035 Rad51 protein; Provisional
Probab=88.19 E-value=1.8 Score=41.82 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHhcCcccc----cCCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVE----RNFEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+|+..++-..+.. +.=..++||+....+.... +.++++.++
T Consensus 126 ~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 126 EFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 37999999998887532211 1223566999877776655 444455544
No 363
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.12 E-value=0.92 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHhcCcccccC
Q 046115 2 GGIGKTTLAQFAYNNGDVERN 22 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~ 22 (505)
+|+||||+|++++. .+...
T Consensus 17 SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 17 SGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CCCCHHHHHHHHHH--HhCcC
Confidence 69999999999998 55544
No 364
>PRK06217 hypothetical protein; Validated
Probab=88.11 E-value=0.68 Score=40.47 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
++|+||||+|++++..
T Consensus 9 ~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 9 ASGSGTTTLGAALAER 24 (183)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999973
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.11 E-value=1.2 Score=39.35 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHHHHcCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAIIESLTPG 51 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~ 51 (505)
+.|+||||.+.+++. ....+=..+..++.... ....+.++...+.++.+
T Consensus 9 ptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp STTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 479999999988887 44444334557775543 34456677777777644
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.08 E-value=1.4 Score=37.05 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+.+..
T Consensus 7 ~~GsGKSTla~~L~~ 21 (149)
T cd02027 7 LSGSGKSTIARALEE 21 (149)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 367
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.07 E-value=2.9 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.+..
T Consensus 6 ~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 6 VAGSGKSTIASALAH 20 (163)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 368
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=1.7 Score=47.06 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC--CChhcHHHHHHHHHHHcCCc-eEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA--KDLVEFQSLMQHIEECVAGK-KFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~-r~Ll 77 (505)
+.|+|||-||++++. .+-+..+.-+-++.++.-+ ..++..... ..-. ....|-..++++ -..|
T Consensus 599 pdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e--------vskligsp~gyvG~e----~gg~LteavrrrP~sVV 664 (898)
T KOG1051|consen 599 PDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE--------VSKLIGSPPGYVGKE----EGGQLTEAVKRRPYSVV 664 (898)
T ss_pred CCchhHHHHHHHHHH--HHcCCccceEEechhhhhh--------hhhccCCCcccccch----hHHHHHHHHhcCCceEE
Confidence 469999999999998 6656666666677665211 333321111 1122 223556666665 5678
Q ss_pred EEeCCCCCCccChhHHHHhhcC
Q 046115 78 VLDDVWNEDYYKWEPFYKCLKN 99 (505)
Q Consensus 78 vlDdv~~~~~~~~~~~~~~~~~ 99 (505)
+||||...+......+.+.+..
T Consensus 665 LfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 665 LFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred EEechhhcCHHHHHHHHHHHhc
Confidence 8999977665444444444443
No 369
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.00 E-value=0.45 Score=44.27 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHhcCcccccCC-CceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..+..- ..++-|+...+
T Consensus 12 GGvGKTT~a~nLa~--~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 12 GGVGKTTTAVNLAA--ALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred CCccHHHHHHHHHH--HHHHhcCCcEEEEeCCCc
Confidence 89999999999998 666333 56777876654
No 370
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=87.99 E-value=1.2 Score=47.66 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=47.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++..+.++.. .++.++.... ......++....+...+. ++--
T Consensus 68 ~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 68 PESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 379999999988776 333333567899988877742 5555653321 112233444455555443 3567
Q ss_pred EEEEeCCC
Q 046115 76 LLVLDDVW 83 (505)
Q Consensus 76 LlvlDdv~ 83 (505)
|+|+|.+.
T Consensus 141 LVVIDSI~ 148 (790)
T PRK09519 141 IVVIDSVA 148 (790)
T ss_pred EEEEcchh
Confidence 89999984
No 371
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=87.89 E-value=0.95 Score=37.32 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAG 72 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 72 (505)
+|+||||+|.+++.. . +.-|++++.-....+ +.......-.--..+.+...+.|...+..
T Consensus 16 PG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~----l~~gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEK--T-----GLEYIEISDLVKENN----LYEGYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCCchhHHHHHHHH--h-----CCceEehhhHHhhhc----chhcccccccCccccHHHHHHHHHHHHhc
Confidence 799999999999972 2 334666665322222 22223222233345566666776666644
No 372
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.77 E-value=2.1 Score=36.87 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceE--EEEeCCCCCHHHHHHHHH----HHcCCCC---CCC-----hhcHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRT--WVCVSEPFDEFRIARAII----ESLTPGS---AKD-----LVEFQSLMQHIE 67 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~l~----~~l~~~~---~~~-----~~~~~~~~~~l~ 67 (505)
.|=||||-|.-.+-. .....+...+ |+.-.........+..+- .+++.+. ..+ .....+..+..+
T Consensus 30 dGKGKTTAAlGlalR-AaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~ 108 (178)
T PRK07414 30 SQRNFFTSVMAQALR-IAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQYTQ 108 (178)
T ss_pred CCCCchHHHHHHHHH-HhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHHHHH
Confidence 478999999555431 2233343322 555443334434433321 1111110 011 111123344455
Q ss_pred HHcCC-ceEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 68 ECVAG-KKFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 68 ~~l~~-~r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
+.+.. .-=|+|||.+-. -...+.+.+...+.....+..|++|-|+.
T Consensus 109 ~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 109 AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 55544 456999999732 23345667777777777888999999983
No 373
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.67 E-value=5.1 Score=35.62 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHHHhCC
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVARIMGS 121 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~~~~~ 121 (505)
.+...+...+-++++|.-... +......+...+... ..+..||++|.+......++.
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 345555566778899997442 222233333333321 235678888888766655444
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.57 E-value=1.2 Score=43.41 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=42.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCC--CceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEP-FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
+.|+||||++.+++. .....+ ..+..++.... ....+.++...+.++.+... ..+..+....+ ..+.++ -++
T Consensus 145 ptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-~~~~~~l~~~l-~~l~~~-DlV 219 (374)
T PRK14722 145 PTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-VKDGGDLQLAL-AELRNK-HMV 219 (374)
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe-cCCcccHHHHH-HHhcCC-CEE
Confidence 479999999999987 433333 34556654332 23455666666666643321 11111122222 334444 456
Q ss_pred EEeCCCCC
Q 046115 78 VLDDVWNE 85 (505)
Q Consensus 78 vlDdv~~~ 85 (505)
++|.....
T Consensus 220 LIDTaG~~ 227 (374)
T PRK14722 220 LIDTIGMS 227 (374)
T ss_pred EEcCCCCC
Confidence 69998543
No 375
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.57 E-value=1.8 Score=43.13 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEEC 69 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~~ 69 (505)
.|+|||||++.+++ ... .+.++..-+++.. +..++...++..-.... ..+.....+. .-.+.+.
T Consensus 171 sG~GKSTLL~~I~~--~~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 171 SGVGKSVLLGMMTR--GTT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CCCChhHHHHHhcc--CCC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999987 222 2455566666544 34445555444311110 1111111111 0112222
Q ss_pred c--CCceEEEEEeCCCC
Q 046115 70 V--AGKKFLLVLDDVWN 84 (505)
Q Consensus 70 l--~~~r~LlvlDdv~~ 84 (505)
+ .++++|+++||+.+
T Consensus 247 frd~G~~VLl~~DslTR 263 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHcCCCEEEEEcChHH
Confidence 2 57899999999843
No 376
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=87.49 E-value=4.4 Score=36.48 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+...+..++-++++|..... +......+...+.....+..||++|.+......
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 44555667789999997542 222233344433332234678888888765543
No 377
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=87.40 E-value=2 Score=42.87 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCC-------CCCChhcHHH----HHHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPG-------SAKDLVEFQS----LMQHIEECV 70 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~----~~~~l~~~l 70 (505)
+|+|||||+..++.. ... ..+++.+.-.+..+..+.....+..-+.. ...+..-... ....+.+.+
T Consensus 165 sG~GKTtLl~~Ia~~--~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 165 SGVGKSTLLGMIAKN--AKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred CCCChHHHHHHHhcc--CCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 699999999999873 321 22344433334456666666555442211 1111111111 111122222
Q ss_pred --CCceEEEEEeCCCC
Q 046115 71 --AGKKFLLVLDDVWN 84 (505)
Q Consensus 71 --~~~r~LlvlDdv~~ 84 (505)
.++++||++|++.+
T Consensus 242 r~~G~~VLlilDslTr 257 (432)
T PRK06793 242 RDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHcCCcEEEEecchHH
Confidence 47899999999955
No 378
>PHA02518 ParA-like protein; Provisional
Probab=87.37 E-value=0.7 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ..+.+=..++-|+...+.+..
T Consensus 10 GGvGKTT~a~~la~--~la~~g~~vlliD~D~q~~~~ 44 (211)
T PHA02518 10 GGAGKTTVATNLAS--WLHADGHKVLLVDLDPQGSST 44 (211)
T ss_pred CCCCHHHHHHHHHH--HHHhCCCeEEEEeCCCCCChH
Confidence 89999999998877 444332345567766555443
No 379
>PRK00625 shikimate kinase; Provisional
Probab=87.37 E-value=0.33 Score=41.91 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
|+|+||||+|+.++.
T Consensus 8 ~pGsGKTT~~k~La~ 22 (173)
T PRK00625 8 LPTVGKTSFGKALAK 22 (173)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999987
No 380
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=87.20 E-value=2.4 Score=42.54 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCC-CHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPF-DEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEE 68 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~ 68 (505)
+|+|||+|+..++. ....+. +.++++-+++.. +..++..++...=.... ..+.....+. .-.+.+
T Consensus 153 ~GvGKt~Ll~~i~~--~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE 230 (463)
T PRK09280 153 AGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE 230 (463)
T ss_pred CCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 69999999998876 343332 345566666543 45566666554321100 0111111111 111223
Q ss_pred Hc---CCceEEEEEeCCCC
Q 046115 69 CV---AGKKFLLVLDDVWN 84 (505)
Q Consensus 69 ~l---~~~r~LlvlDdv~~ 84 (505)
.+ .++++||++|++.+
T Consensus 231 yfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 231 YFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHhcCCceEEEecchHH
Confidence 33 67899999999943
No 381
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=87.15 E-value=1.2 Score=47.88 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+|||.+|+.+.+. -...-...+.+++....+ ..+...+...-. +..... .......+. ....-.|+||+
T Consensus 408 ~GTGK~~lA~~ih~~--s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~-~~~~g~--~~~~~g~le---~a~~GtL~Lde 478 (686)
T PRK15429 408 TGTGKELIARAIHNL--SGRNNRRMVKMNCAAMPA-GLLESDLFGHER-GAFTGA--SAQRIGRFE---LADKSSLFLDE 478 (686)
T ss_pred CCcCHHHHHHHHHHh--cCCCCCCeEEEecccCCh-hHhhhhhcCccc-cccccc--ccchhhHHH---hcCCCeEEEec
Confidence 699999999999873 222223445566665321 112222222111 000000 001111121 12235799999
Q ss_pred CCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 82 VWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|..-......++...+.... .+.+||.||..
T Consensus 479 i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 479 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 97765555556666554321 34578888764
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.14 E-value=7.9 Score=33.64 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHHH
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVARI 118 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~~ 118 (505)
.+.+.+..++-++++|+-... +......+.+.+... ..+..||++|.+......
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 355556667789999997442 222233333333322 236678999888654443
No 383
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.03 E-value=0.88 Score=40.89 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCCCCcc-C----hhHHHHhhcCCC-CCcEEEEEeCchHHHHHh
Q 046115 71 AGKKFLLVLDDVWNEDYY-K----WEPFYKCLKNSL-HESKILITTRKETVARIM 119 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~-~----~~~~~~~~~~~~-~~~~iLiTtr~~~~~~~~ 119 (505)
...+-|+++|......+. + ...+...+...+ .+..+|+||-...+....
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 467899999998664321 1 123344443332 245799999987766543
No 384
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.96 E-value=2.7 Score=41.59 Aligned_cols=15 Identities=33% Similarity=0.135 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|..++.
T Consensus 231 ptGvGKTTtaaKLA~ 245 (432)
T PRK12724 231 PTGSGKTTSIAKLAA 245 (432)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999986
No 385
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=14 Score=38.81 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||-||.+++.. - ..-+|++..+ +++.+.- ..+.+...+...+.-.-++|.|.||
T Consensus 709 ppGcGKT~la~a~a~~--~-----~~~fisvKGP--------ElL~KyI------GaSEq~vR~lF~rA~~a~PCiLFFD 767 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASN--S-----NLRFISVKGP--------ELLSKYI------GASEQNVRDLFERAQSAKPCILFFD 767 (952)
T ss_pred CCCCcHHHHHHHHHhh--C-----CeeEEEecCH--------HHHHHHh------cccHHHHHHHHHHhhccCCeEEEec
Confidence 5899999999999872 1 2235776653 3333322 1122333444445556689999999
Q ss_pred CCCCCC-----------ccChhHHHHhhcCC--CCCcEEEE-EeCchHHHHHh---CC-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNED-----------YYKWEPFYKCLKNS--LHESKILI-TTRKETVARIM---GS-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~-----------~~~~~~~~~~~~~~--~~~~~iLi-Ttr~~~~~~~~---~~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
..++.. +....+++..+... -.|.-|+. |||-.-+.... +. .+.+.-+.-++.|-.++|+..
T Consensus 768 EfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~l 847 (952)
T KOG0735|consen 768 EFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVL 847 (952)
T ss_pred cccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHH
Confidence 985421 12234444444422 13555555 55543332221 22 456666777888888888776
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
.-.-.. ... -..+.++...+|+.
T Consensus 848 s~s~~~-~~~----vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 848 SNSLLK-DTD----VDLECLAQKTDGFT 870 (952)
T ss_pred hhccCC-ccc----cchHHHhhhcCCCc
Confidence 521111 111 22556777777766
No 386
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=86.91 E-value=8.5 Score=35.45 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=38.9
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHhCC-cceEeCCCC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIMGS-THVISVNVL 130 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~~~-~~~~~l~~l 130 (505)
++-++|+|+++.........+++.+.....++.+|.+|.++ .+..-+.+ ...+.+...
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 45677899998877778888999998887777777777664 33332222 235555554
No 387
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=86.86 E-value=0.59 Score=40.90 Aligned_cols=32 Identities=28% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
.+|+|||+||.+++. ...++=..++|++...+
T Consensus 7 ~~G~GKT~l~~~~~~--~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 7 GPGTGKTTFALQFLY--AGLARGEPGLYVTLEES 38 (187)
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCC
Confidence 479999999999887 33333356778887654
No 388
>CHL00206 ycf2 Ycf2; Provisional
Probab=86.85 E-value=8.8 Score=45.23 Aligned_cols=70 Identities=9% Similarity=0.085 Sum_probs=38.6
Q ss_pred CCceEEEEEeCCCCCCc-----cChhHHHHhhcCC-----CCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhH
Q 046115 71 AGKKFLLVLDDVWNEDY-----YKWEPFYKCLKNS-----LHESKILITTRKETVAR-IM---GS-THVISVNVLSEMEC 135 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~-----~~~~~~~~~~~~~-----~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea 135 (505)
+..+++|.+|+++.-.. ..+..++..+... ..+.-||.+|..++... +. +. .+.+.++.++..+-
T Consensus 1730 k~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R 1809 (2281)
T CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809 (2281)
T ss_pred HCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhH
Confidence 45689999999865321 1245666555532 23444566665554422 21 22 45777776666555
Q ss_pred HHHHH
Q 046115 136 WSVFQ 140 (505)
Q Consensus 136 ~~Lf~ 140 (505)
.+.|.
T Consensus 1810 ~kiL~ 1814 (2281)
T CHL00206 1810 RKHFF 1814 (2281)
T ss_pred HHHHH
Confidence 55443
No 389
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=86.80 E-value=8.4 Score=35.90 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+-++++++. .+..+-+..+..++...++..+........... .-.....+..++.+..-+++.|
T Consensus 102 ~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~---~~d~~~~~~~~l~~~~~~iivD 172 (297)
T COG2842 102 YAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDGT---INDLTERLMIRLRDTVRLIIVD 172 (297)
T ss_pred cccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccchh---HHHHHHHHHHHHccCcceeeee
Confidence 4799999999999983 223333456666666566665555544222221 2223334444557777889999
Q ss_pred CCCCCCccChhHHHHhhcCCCCC
Q 046115 81 DVWNEDYYKWEPFYKCLKNSLHE 103 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~~~ 103 (505)
+.+.-....++.+.......+-+
T Consensus 173 EA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 173 EADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred hhhccChHHHHHHHHHHHhhCce
Confidence 98775555566666555544444
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=86.78 E-value=1.7 Score=43.53 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||.|..++.
T Consensus 108 ~~GsGKTTtaakLA~ 122 (433)
T PRK10867 108 LQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCCcHHHHHHHHHH
Confidence 479999998888876
No 391
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=0.14 Score=44.35 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=39.2
Q ss_pred CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc-hhhhc
Q 046115 357 GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP-ETLCE 435 (505)
Q Consensus 357 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 435 (505)
.+..++-++..+... --..+..++.++.|.+.+++.+.+. .++.+. +..++|+.|++++|+.+++-. ..+.+
T Consensus 102 ~IeaVDAsds~I~~e---Gle~L~~l~~i~~l~l~~ck~~dD~-~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE---GLEHLRDLRSIKSLSLANCKYFDDW-CLERLG---GLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHH---HHHHHhccchhhhheeccccchhhH-HHHHhc---ccccchheeeccCCCeechhHHHHHHH
Confidence 355555555544321 2222555556666666532211100 011111 134566677777666655432 23456
Q ss_pred CCCCcEEecCC
Q 046115 436 LYNLERLNVDD 446 (505)
Q Consensus 436 l~~L~~L~l~~ 446 (505)
+++|+.|.|++
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 66666666555
No 392
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=86.70 E-value=2.3 Score=39.44 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCce-EEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEKR-TWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|| ..+++ +. +-+.+ +++-+++.. +..++..++..
T Consensus 78 ~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~ 121 (274)
T cd01132 78 RQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEE 121 (274)
T ss_pred CCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHh
Confidence 579999996 55555 22 23444 455566643 44555555553
No 393
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=86.63 E-value=1.9 Score=43.57 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCc-eEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEK-RTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|| ..+++ +. .-+. ++++-+++.. +..++...+..
T Consensus 171 ~g~GKT~Lal~~I~~--q~--~~dv~~V~~~IGeR~rev~e~i~~l~~ 214 (497)
T TIGR03324 171 RQTGKTAIAIDTILN--QK--GRNVLCIYCAIGQRASAVAKVVANLRE 214 (497)
T ss_pred CCCCHHHHHHHHHHH--hc--CCCcEEEEEEeccCcHHHHHHHHHhhh
Confidence 499999997 57777 32 3344 5677777754 44555555544
No 394
>PRK06762 hypothetical protein; Provisional
Probab=86.58 E-value=0.4 Score=41.14 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 10 ~~GsGKST~A~~L~~ 24 (166)
T PRK06762 10 NSGSGKTTIAKQLQE 24 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 395
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.49 E-value=0.52 Score=43.90 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
+|+|||++|.+++. +..++...++||+..+.
T Consensus 32 pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 32 PGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred CCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 79999999999998 66777888999998875
No 396
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=86.32 E-value=2.2 Score=43.92 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCCCCC------hhcHHHHHHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEe
Q 046115 38 FRIARAIIESLTPGSAKD------LVEFQSLMQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITT 110 (505)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~------~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTt 110 (505)
....+..+..++.+.... .+.-+...-.+...+..+.-+||||.-.+. +....+.+...+..+. | .||+.|
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-G-tvl~VS 493 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVS 493 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-C-eEEEEe
Confidence 344555555555443322 222233444566666778899999997553 4445566666666553 4 488889
Q ss_pred CchHHHHHhCCcceEeCCC
Q 046115 111 RKETVARIMGSTHVISVNV 129 (505)
Q Consensus 111 r~~~~~~~~~~~~~~~l~~ 129 (505)
-++.....+. ..++.+.+
T Consensus 494 HDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 494 HDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred CCHHHHHhhc-ceEEEEcC
Confidence 9988777655 34666654
No 397
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.31 E-value=0.34 Score=45.35 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.+|+|||++++.+.. ..... . .+.-++++...+... ++.+++.-....... ...--.+|+.++.+
T Consensus 41 ~~GtGKT~li~~~l~--~l~~~-~~~~~~~~~s~~Tts~~-~q~~ie~~l~k~~~~----------~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 41 PSGTGKTSLIQNFLS--SLDSD-KYLVITINFSAQTTSNQ-LQKIIESKLEKRRGR----------VYGPPGGKKLVLFI 106 (272)
T ss_dssp STTSSHHHHHHHHHH--CSTTC-CEEEEEEES-TTHHHHH-HHHCCCTTECECTTE----------EEEEESSSEEEEEE
T ss_pred CCCCchhHHHHhhhc--cCCcc-ccceeEeeccCCCCHHH-HHHHHhhcEEcCCCC----------CCCCCCCcEEEEEe
Confidence 479999999999886 33221 2 123455554433322 222222111000000 00012468899999
Q ss_pred eCCCCCC
Q 046115 80 DDVWNED 86 (505)
Q Consensus 80 Ddv~~~~ 86 (505)
||+.-+.
T Consensus 107 DDlN~p~ 113 (272)
T PF12775_consen 107 DDLNMPQ 113 (272)
T ss_dssp ETTT-S-
T ss_pred cccCCCC
Confidence 9995544
No 398
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.29 E-value=0.81 Score=41.06 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||.||||++..++. ....+=..+.-|+...+
T Consensus 11 GGaGKTT~~~~LAs--~la~~G~~V~lIDaDpn 41 (231)
T PF07015_consen 11 GGAGKTTAAMALAS--ELAARGARVALIDADPN 41 (231)
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEeCCCC
Confidence 89999999999998 66555455556665443
No 399
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=86.28 E-value=3.5 Score=36.58 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchHHHH
Q 046115 61 SLMQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKETVAR 117 (505)
Q Consensus 61 ~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~~~~ 117 (505)
...-.+.+.+...+-++++|+.... +......+...+... ..+..||++|.+.....
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3344456666667789999997442 222233333333322 23667888888876655
No 400
>PTZ00185 ATPase alpha subunit; Provisional
Probab=86.28 E-value=3.8 Score=41.56 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCCcHHHHH-HHHhcCcccc-----cCCCceEEEEeCCCCCHHHHHHHHHHHcCC---C-----CCCChhcHH-------
Q 046115 2 GGIGKTTLA-QFAYNNGDVE-----RNFEKRTWVCVSEPFDEFRIARAIIESLTP---G-----SAKDLVEFQ------- 60 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~---~-----~~~~~~~~~------- 60 (505)
.|+|||+|| ..+++...+. ++-..++++-+++......-+...+++-+. . ...+..-..
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a 277 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSG 277 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHH
Confidence 599999998 5666632111 233456688888866554444444444331 0 011111111
Q ss_pred -HHHHHHHHHcCCceEEEEEeCCCC
Q 046115 61 -SLMQHIEECVAGKKFLLVLDDVWN 84 (505)
Q Consensus 61 -~~~~~l~~~l~~~r~LlvlDdv~~ 84 (505)
...+.+++ .++.+|+|+||+.+
T Consensus 278 ~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 278 VTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHH--cCCCEEEEEcCchH
Confidence 11222332 47899999999843
No 401
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=86.18 E-value=3.1 Score=37.61 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+.++.
T Consensus 7 ~sGSGKTTla~~L~~ 21 (220)
T cd02025 7 SVAVGKSTTARVLQA 21 (220)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 402
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.16 E-value=4.6 Score=40.49 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHhcCcccc--cCCCceEEEEeCCCCC-HHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVE--RNFEKRTWVCVSEPFD-EFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~--~~f~~~~wv~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
++|+||||++..++. ... ..-..+..|+...... ..+.+....+.++.+... ..+..+....+.+ +. ..=++
T Consensus 229 ptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~-~~~~~~l~~~l~~-~~-~~DlV 303 (424)
T PRK05703 229 PTGVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV-VYDPKELAKALEQ-LR-DCDVI 303 (424)
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc-cCCHHhHHHHHHH-hC-CCCEE
Confidence 479999999988876 333 2223555676543221 123333334444432211 1222333333333 23 35688
Q ss_pred EEeCCCC
Q 046115 78 VLDDVWN 84 (505)
Q Consensus 78 vlDdv~~ 84 (505)
++|....
T Consensus 304 lIDt~G~ 310 (424)
T PRK05703 304 LIDTAGR 310 (424)
T ss_pred EEeCCCC
Confidence 8997644
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.10 E-value=1.6 Score=43.60 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||.|..++.
T Consensus 107 ~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 107 LQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCCcHHHHHHHHHH
Confidence 479999999988887
No 404
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=86.05 E-value=3.1 Score=41.58 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCC-----CCCChhcHHH---------HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPG-----SAKDLVEFQS---------LMQHIE 67 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~---------~~~~l~ 67 (505)
+|+|||||++.++.. . ....+++++......+..++....+...... ...+.....+ ..+.++
T Consensus 174 SGsGKTTLL~~Ia~l--~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 174 SGVGKSTLLAMLARA--D-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCCHHHHHHHHhCC--C-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999988862 2 2223455554334445544444333322110 1111111111 112222
Q ss_pred HHcCCceEEEEEeCCCC
Q 046115 68 ECVAGKKFLLVLDDVWN 84 (505)
Q Consensus 68 ~~l~~~r~LlvlDdv~~ 84 (505)
. .++++|+++||+.+
T Consensus 251 d--~G~~Vll~~DslTr 265 (450)
T PRK06002 251 D--RGENVLLIVDSVTR 265 (450)
T ss_pred H--cCCCEEEeccchHH
Confidence 2 47899999999843
No 405
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.02 E-value=2.5 Score=39.83 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC-C-CceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-F-EKRTWVCVSEPF-DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f-~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
.+|+||||++..++. ....+ - ..+..|+..... ...+.+....+.++.+.. ...+.......+. .+.+ .=++
T Consensus 202 ptGvGKTTt~~kLa~--~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~-~~~~-~d~v 276 (282)
T TIGR03499 202 PTGVGKTTTLAKLAA--RFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALD-RLRD-KDLI 276 (282)
T ss_pred CCCCCHHHHHHHHHH--HHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHH-HccC-CCEE
Confidence 479999999999887 44332 1 345566654322 223334444444442221 1122233333333 3333 3477
Q ss_pred EEeCC
Q 046115 78 VLDDV 82 (505)
Q Consensus 78 vlDdv 82 (505)
++|..
T Consensus 277 liDt~ 281 (282)
T TIGR03499 277 LIDTA 281 (282)
T ss_pred EEeCC
Confidence 77753
No 406
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=85.97 E-value=3.8 Score=39.29 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeC-CCCCHHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVS-EPFDEFRIARAIIES 47 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~l~~~ 47 (505)
.|.|||||++.++. .... +.++..-++ ...+..++.......
T Consensus 78 sG~GKTtLl~~Ia~--~~~~--~~~vi~~iGer~~ev~~~~~~~~~~ 120 (326)
T cd01136 78 SGVGKSTLLGMIAR--GTTA--DVNVIALIGERGREVREFIEKDLGE 120 (326)
T ss_pred CCCChHHHHHHHhC--CCCC--CEEEEEEEecCCccHHHHHHHHHhc
Confidence 69999999999987 3322 233333333 334555555555443
No 407
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=85.74 E-value=1.9 Score=41.56 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+||+++|+.+... -...-...+.|++....+ ..+...+...-. +....... .....+. ....-.|+||+
T Consensus 38 ~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~-~~~~g~~~--~~~g~l~---~a~gGtL~l~~ 108 (326)
T PRK11608 38 RGTGKELIASRLHYL--SSRWQGPFISLNCAALNE-NLLDSELFGHEA-GAFTGAQK--RHPGRFE---RADGGTLFLDE 108 (326)
T ss_pred CCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCCH-HHHHHHHccccc-cccCCccc--ccCCchh---ccCCCeEEeCC
Confidence 699999999998762 211112344566665332 222222221111 00000000 0011111 11233588999
Q ss_pred CCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 82 VWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|..-.......+...+.... ..++||.||..
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 97766555566666554321 13678887754
No 408
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=85.59 E-value=0.7 Score=45.07 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
-|.|||.|.-.+++.-.++.+ .-....+...++-..+.... ... .....+.+.+.++..||+||.
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~-~~~----~~l~~va~~l~~~~~lLcfDE 135 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLR-GQD----DPLPQVADELAKESRLLCFDE 135 (362)
T ss_pred CCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHh-CCC----ccHHHHHHHHHhcCCEEEEee
Confidence 499999999999885222111 01111233333333332100 111 123344556667777999999
Q ss_pred CCCCCccCh---hHHHHhhcCCCCCcEEEEEeCch
Q 046115 82 VWNEDYYKW---EPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 82 v~~~~~~~~---~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
..-.+..+. ..+...+. ..|. |||+|.|.
T Consensus 136 F~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 136 FQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred eeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 754443222 22333332 3554 66666664
No 409
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=85.55 E-value=2.4 Score=42.47 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHhcCcccccCC-CceEEEEeCCC-CCHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEP-FDEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEE 68 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~ 68 (505)
+|+|||+|+.+++. ....+. ..++++-+++. .+..++...+...=.... ..+.....+. .-.+.+
T Consensus 152 ~G~GKt~L~~~~~~--~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 229 (461)
T TIGR01039 152 AGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229 (461)
T ss_pred CCCChHHHHHHHHH--HHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999887 443332 34557767654 345566666544211110 1111111111 111223
Q ss_pred Hc---CCceEEEEEeCCCC
Q 046115 69 CV---AGKKFLLVLDDVWN 84 (505)
Q Consensus 69 ~l---~~~r~LlvlDdv~~ 84 (505)
.+ +++++||++||+.+
T Consensus 230 yfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 230 YFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHhcCCeeEEEecchhH
Confidence 33 56899999999944
No 410
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=85.54 E-value=0.52 Score=40.89 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|++++.
T Consensus 10 ~~gsGKst~a~~l~~ 24 (175)
T cd00227 10 GSSAGKSSIARALQS 24 (175)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 411
>PRK13947 shikimate kinase; Provisional
Probab=85.42 E-value=0.47 Score=40.88 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
|+|+||||+|+.+++
T Consensus 9 ~~GsGKst~a~~La~ 23 (171)
T PRK13947 9 FMGTGKTTVGKRVAT 23 (171)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999998
No 412
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.38 E-value=0.52 Score=39.61 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.+..
T Consensus 7 ~~GsGKST~a~~l~~ 21 (150)
T cd02021 7 VSGSGKSTVGKALAE 21 (150)
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999988
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=85.32 E-value=1.7 Score=38.74 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCceEEEEEeCCCCCCcc-C----hhHHHHhhcCCCCCcEEEEEeCchHHHHHhC
Q 046115 71 AGKKFLLVLDDVWNEDYY-K----WEPFYKCLKNSLHESKILITTRKETVARIMG 120 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~-~----~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~ 120 (505)
..++-|+++|........ + ...+...+... ++.+|++|-+..+.....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhh
Confidence 356789999998553321 1 22334444433 778999999887766543
No 414
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=85.30 E-value=0.55 Score=41.56 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc
Q 046115 74 KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 74 r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
+-+||+|.+.-.+...+..+...... .++++++.--.
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 35999999966555556666665554 35666665443
No 415
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=85.25 E-value=9.7 Score=33.86 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=30.5
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.+.+..++=++++|+.... +......+...+.....+..+|++|.+......
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44455556678889997542 222233344444433346678888888766543
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.19 E-value=6.8 Score=38.30 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Llv 78 (505)
+.|+||||++..++. ....+-..+.+++..... ...+.++...+.++.+.. ...+..+..+.+...- .+..=+++
T Consensus 214 ptGvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~~~~~~D~VL 290 (407)
T PRK12726 214 QTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMTYVNCVDHIL 290 (407)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 369999999999887 333332345677765433 234455555666653322 1223344433333322 13456888
Q ss_pred EeCCCC
Q 046115 79 LDDVWN 84 (505)
Q Consensus 79 lDdv~~ 84 (505)
+|-...
T Consensus 291 IDTAGr 296 (407)
T PRK12726 291 IDTVGR 296 (407)
T ss_pred EECCCC
Confidence 898855
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=85.17 E-value=1.1 Score=39.87 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=28.1
Q ss_pred CceEEEEEeCCCCCCccCh-h----HHHHhhcCCCCCcEEEEEeCchHHHHHhC
Q 046115 72 GKKFLLVLDDVWNEDYYKW-E----PFYKCLKNSLHESKILITTRKETVARIMG 120 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~-~----~~~~~~~~~~~~~~iLiTtr~~~~~~~~~ 120 (505)
..+-++++|.....-+... . .+...+.. .++.+|++|-+.++...+.
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~--~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEECChHHHHHHhh
Confidence 4788999999855322211 1 22232322 3667899998877766544
No 418
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=85.14 E-value=0.51 Score=41.70 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CC---ceEEEEeCCCCCHHHHHHHHHHHcCC---CCCCChhcHHHHHHHHHHHcCCc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FE---KRTWVCVSEPFDEFRIARAIIESLTP---GSAKDLVEFQSLMQHIEECVAGK 73 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~---~~~wv~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~l~~~l~~~ 73 (505)
.+|+||||+|++++. ..... .. ....+.............. -..... -......+.+...+.+.....++
T Consensus 7 ~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~ 83 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKALKNGG 83 (194)
T ss_dssp STTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHHhCCC
Confidence 479999999999987 45432 32 1333333322222221111 121110 12234566666667676655555
Q ss_pred eEEE
Q 046115 74 KFLL 77 (505)
Q Consensus 74 r~Ll 77 (505)
.+-+
T Consensus 84 ~i~~ 87 (194)
T PF00485_consen 84 SIEI 87 (194)
T ss_dssp CEEE
T ss_pred cccc
Confidence 5433
No 419
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=85.08 E-value=4.3 Score=42.28 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcH-HHHHHHHHHHcCCceEEEEEe
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEF-QSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~l~~~r~LlvlD 80 (505)
.|+|||++|+.+.+. -...-...+.|++....+ ..+...+ ++ ......... ...... ......-.|+||
T Consensus 228 ~GtGK~~lA~~ih~~--s~r~~~pfv~i~c~~~~~--~~~~~~l--fg-~~~~~~~~~~~~~~g~---~~~a~~GtL~ld 297 (534)
T TIGR01817 228 SGTGKELIAKAIHYL--SPRAKRPFVKVNCAALSE--TLLESEL--FG-HEKGAFTGAIAQRKGR---FELADGGTLFLD 297 (534)
T ss_pred CCccHHHHHHHHHHh--CCCCCCCeEEeecCCCCH--HHHHHHH--cC-CCCCccCCCCcCCCCc---ccccCCCeEEEe
Confidence 699999999999873 222222344566665422 2222211 11 110000000 000000 001223468899
Q ss_pred CCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
+|..-.......+...+.... ...+||.||..
T Consensus 298 ei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 298 EIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 997766555566666654321 13577777654
No 420
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=7.7 Score=35.14 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF 23 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f 23 (505)
++|.|||.||+++++ .....|
T Consensus 197 ppg~gktml~kava~--~t~a~f 217 (408)
T KOG0727|consen 197 PPGTGKTMLAKAVAN--HTTAAF 217 (408)
T ss_pred CCCCcHHHHHHHHhh--ccchhe
Confidence 589999999999999 344444
No 421
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.04 E-value=0.65 Score=40.23 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKST~a~~la~ 26 (175)
T PRK00889 12 LSGAGKTTIARALAE 26 (175)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 422
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=85.02 E-value=0.4 Score=37.71 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||++|..++.
T Consensus 6 ~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 6 PPGIGKSTLAKELAK 20 (107)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999887
No 423
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=84.99 E-value=0.55 Score=36.52 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
||+||||+|..++.
T Consensus 9 gG~Gkst~~~~la~ 22 (104)
T cd02042 9 GGVGKTTTAVNLAA 22 (104)
T ss_pred CCcCHHHHHHHHHH
Confidence 89999999999887
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=84.94 E-value=0.51 Score=40.71 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKstla~~La~ 26 (175)
T PRK00131 12 FMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999998
No 425
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.81 E-value=9.4 Score=34.77 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 64 QHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
-.+.+.+..++-++++|..... +......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3355556667789999997542 222333444444433226678888888766544
No 426
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=84.68 E-value=1.6 Score=38.04 Aligned_cols=15 Identities=47% Similarity=0.465 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||..++.
T Consensus 7 ~sgsGKttla~~l~~ 21 (179)
T cd02028 7 PSGSGKTTFAKKLSN 21 (179)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 427
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.64 E-value=2.8 Score=33.79 Aligned_cols=99 Identities=14% Similarity=0.295 Sum_probs=55.8
Q ss_pred HhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccch
Q 046115 378 LFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR 455 (505)
Q Consensus 378 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~ 455 (505)
.|..+.+|+.+.+. .. +..++ ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.+ . +..++.
T Consensus 7 ~F~~~~~l~~i~~~-------~~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~ 74 (129)
T PF13306_consen 7 AFYNCSNLESITFP-------NT-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGD 74 (129)
T ss_dssp TTTT-TT--EEEET-------ST---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-T
T ss_pred HHhCCCCCCEEEEC-------CC-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-cccccc
Confidence 36677789999886 33 44444 34677888999999874 666655 457777899999976 3 566665
Q ss_pred h-ccccccCceeecCCCcccccccc-cccCCccCCccc
Q 046115 456 G-IGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVR 491 (505)
Q Consensus 456 ~-~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 491 (505)
. +..+++|+.+.+..+ ...++. .|.++ .|+.+.
T Consensus 75 ~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp TTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred ccccccccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 4 667899999999765 234433 46665 666554
No 428
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.56 E-value=5.3 Score=39.05 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEe-CCCCCHHHHHHHHHHHcCCCC------CCChhcHHHHH-----HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCV-SEPFDEFRIARAIIESLTPGS------AKDLVEFQSLM-----QHIEEC 69 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~-----~~l~~~ 69 (505)
+|+|||||.-.+++. ..+|.++-.-+ .+-.+..+.....+..-+... ..+.+...+.. ..+.+.
T Consensus 172 sGVGKStLLgMiar~----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 172 SGVGKSTLLGMIARN----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CCCcHHHHHHHHhcc----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999982 44565553333 334566666666655443221 12222332222 223444
Q ss_pred c--CCceEEEEEeCCC
Q 046115 70 V--AGKKFLLVLDDVW 83 (505)
Q Consensus 70 l--~~~r~LlvlDdv~ 83 (505)
. +++++||++|.+.
T Consensus 248 FRDqG~~VLL~mDSlT 263 (441)
T COG1157 248 FRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHhCCCeEEEEeecHH
Confidence 4 4689999999983
No 429
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.52 E-value=0.57 Score=37.71 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=12.6
Q ss_pred CCcHHHHHHHHhcC
Q 046115 3 GIGKTTLAQFAYNN 16 (505)
Q Consensus 3 G~GKT~LA~~~~~~ 16 (505)
|+||||+++.+++.
T Consensus 25 GaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 25 GAGKTTFVRGLARA 38 (123)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999864
No 430
>PTZ00301 uridine kinase; Provisional
Probab=84.51 E-value=0.87 Score=40.71 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||+.+..
T Consensus 11 ~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 11 ASGSGKSSLSTNIVS 25 (210)
T ss_pred CCcCCHHHHHHHHHH
Confidence 379999999998876
No 431
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=84.44 E-value=15 Score=33.20 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=39.9
Q ss_pred hcHHHHHHHHHHHcCCceEEEEEeCCC-CCCccChhHHHHhhcCC--CCCcEEEEEeCchHHHHHhCC
Q 046115 57 VEFQSLMQHIEECVAGKKFLLVLDDVW-NEDYYKWEPFYKCLKNS--LHESKILITTRKETVARIMGS 121 (505)
Q Consensus 57 ~~~~~~~~~l~~~l~~~r~LlvlDdv~-~~~~~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~~~~ 121 (505)
+.-++..-.+.+.+...+-+|+.|.-. +-+...-..+...+... ..|..||+.|-++.++..++.
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 444455556777777777888888742 22222333444444432 346789999999998876543
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=84.37 E-value=1.3 Score=40.19 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 14 ~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 14 APGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 433
>PRK08006 replicative DNA helicase; Provisional
Probab=84.34 E-value=6.2 Score=40.16 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
+|+|||++|..++. .... +-..+++++.. -+..++...++...
T Consensus 233 PgmGKTafalnia~--~~a~~~g~~V~~fSlE--M~~~ql~~Rlla~~ 276 (471)
T PRK08006 233 PSMGKTTFAMNLCE--NAAMLQDKPVLIFSLE--MPGEQIMMRMLASL 276 (471)
T ss_pred CCCCHHHHHHHHHH--HHHHhcCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 79999999999887 3332 21234455443 44556666666544
No 434
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=84.32 E-value=0.89 Score=41.60 Aligned_cols=29 Identities=28% Similarity=0.134 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
|+|+||||+++.+.+ -...+-..++-|+.
T Consensus 4 paGSGKTT~~~~~~~--~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSE--WLESNGRDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHH--HHTTT-S-EEEEE-
T ss_pred CCCCCHHHHHHHHHH--HHHhccCCceEEEc
Confidence 689999999999877 33333233444543
No 435
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.31 E-value=8 Score=38.17 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=42.3
Q ss_pred CCCCcHHHHHHHHhcCcccc--cCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVE--RNFEKRTWVCVSEPF-DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 77 (505)
..|+||||.+..++...... .+-..+..++..... .....++...+.++.+.. .....++....+.. + +..-++
T Consensus 182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~~-~-~~~DlV 258 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEITQ-S-KDFDLV 258 (388)
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHHH-h-CCCCEE
Confidence 36999999999888631111 111234455544322 223345555665654321 11222333333333 2 345688
Q ss_pred EEeCCCCC
Q 046115 78 VLDDVWNE 85 (505)
Q Consensus 78 vlDdv~~~ 85 (505)
++|-....
T Consensus 259 LIDTaGr~ 266 (388)
T PRK12723 259 LVDTIGKS 266 (388)
T ss_pred EEcCCCCC
Confidence 99998554
No 436
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.30 E-value=3.2 Score=41.28 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAII 45 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~ 45 (505)
+|+|||||+..+++ ... .+..+...+++. .+..++...+.
T Consensus 146 sG~GKTtLl~~I~~--~~~--~~~~vi~~iGer~~ev~e~~~~~~ 186 (411)
T TIGR03496 146 SGVGKSTLLGMMAR--YTE--ADVVVVGLIGERGREVKEFIEDIL 186 (411)
T ss_pred CCCCHHHHHHHHhc--CCC--CCEEEEEEEecChHHHHHHHHHHh
Confidence 69999999999987 222 233444445443 33444444443
No 437
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=84.29 E-value=5.1 Score=38.02 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCC-cEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHE-SKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~-~~iLiTtr~~~~~~~ 118 (505)
+...|..++=+++||.-.+. +...-..+.+.+... ..| ..|++||-.......
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 45556667789999997442 222222233333322 223 679999987554443
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=84.28 E-value=3.1 Score=41.69 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 46 (505)
+|+|||||++.++.. .... .++++..-.+..+..++...+..
T Consensus 172 sG~GKTtLl~~ia~~--~~~d-~~vi~~iGer~~ev~ef~~~~~~ 213 (441)
T PRK09099 172 AGVGKSTLMGMFARG--TQCD-VNVIALIGERGREVREFIELILG 213 (441)
T ss_pred CCCCHHHHHHHHhCC--CCCC-eEEEEEEccChHHHHHHHHHHhh
Confidence 699999999999873 2221 24444444444455555555544
No 439
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=84.20 E-value=6.3 Score=39.62 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
.+|+|||++|..++. ... .+=..++|++..- +...+...++...
T Consensus 202 ~pg~GKT~~al~ia~--~~a~~~g~~v~~fSlEm--~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 202 RPSMGKTTLALNIAE--NVALREGKPVLFFSLEM--SAEQLGERLLASK 246 (421)
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCC--CHHHHHHHHHHHH
Confidence 379999999999986 332 2223566776543 4556666665543
No 440
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.19 E-value=2.7 Score=41.82 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEECV 70 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~~l 70 (505)
+|+|||||++.++. .... ..+++.....+..+..++....+..-+... ..+.....+. .-.+.+.+
T Consensus 149 sG~GKTtLl~~I~~--~~~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 149 SGVGKSTLLSMLAR--NTDA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred CCCChHHHHHHHhC--CCCC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999887 3322 223333333334444455554443321110 1111111111 11122222
Q ss_pred --CCceEEEEEeCCCC
Q 046115 71 --AGKKFLLVLDDVWN 84 (505)
Q Consensus 71 --~~~r~LlvlDdv~~ 84 (505)
.++++||++||+.+
T Consensus 226 rd~G~~Vll~~DslTr 241 (418)
T TIGR03498 226 RDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHcCCCEEEeccchhH
Confidence 57899999999844
No 441
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.13 E-value=3 Score=41.53 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
+|+|||||+..+++
T Consensus 146 sG~GKTtLl~~i~~ 159 (413)
T TIGR03497 146 SGVGKSTLLGMIAR 159 (413)
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999998887
No 442
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.12 E-value=14 Score=33.06 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcC-CCCCcEEEEEeCchHHHHH
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKN-SLHESKILITTRKETVARI 118 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iLiTtr~~~~~~~ 118 (505)
.+.+.+-.++-++++|...+. +......+...+.. ...+..||++|.+......
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 344455556668899997442 22222333333322 1235678888888765543
No 443
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.00 E-value=12 Score=35.72 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC-ceEEEEeCCCCC-HHHHHHHHHHHc----CCCCCCChhcHHHHHHHHHHHcCC--
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE-KRTWVCVSEPFD-EFRIARAIIESL----TPGSAKDLVEFQSLMQHIEECVAG-- 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~l~~~l~~-- 72 (505)
+.|+|||+|......+ .+.|. ...-|....... ..-.++.|.+++ .... ....+..+....+...|+.
T Consensus 57 prgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~ 132 (408)
T KOG2228|consen 57 PRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIV-KSFGSFTENLSKLLEALKKGD 132 (408)
T ss_pred cCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhh-eeecccchhHHHHHHHHhcCC
Confidence 4799999999777763 23332 223333333222 222444555444 3221 1122223334444444432
Q ss_pred ----ceEEEEEeCCCCCCccChhHHHHhhcC-----CCCCcEEEEEeCchH---HHHHhCC----cceEeCCCCChhhHH
Q 046115 73 ----KKFLLVLDDVWNEDYYKWEPFYKCLKN-----SLHESKILITTRKET---VARIMGS----THVISVNVLSEMECW 136 (505)
Q Consensus 73 ----~r~LlvlDdv~~~~~~~~~~~~~~~~~-----~~~~~~iLiTtr~~~---~~~~~~~----~~~~~l~~l~~~ea~ 136 (505)
-++++|+|.++-...-.-+.+...+.+ ..+-|-|-+|||-.. +.+.+.. ..++-++.+...+-+
T Consensus 133 ~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv 212 (408)
T KOG2228|consen 133 ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYV 212 (408)
T ss_pred CCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHH
Confidence 368899988754332222223332222 345677888998632 2233322 235556777777877
Q ss_pred HHHHHhh
Q 046115 137 SVFQSLA 143 (505)
Q Consensus 137 ~Lf~~~~ 143 (505)
++++...
T Consensus 213 ~l~r~ll 219 (408)
T KOG2228|consen 213 DLYRKLL 219 (408)
T ss_pred HHHHHHh
Confidence 7776654
No 444
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=83.99 E-value=0.79 Score=39.02 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN 22 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~ 22 (505)
++|+||||+|.++.. ....+
T Consensus 31 LSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 31 LSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred CCCCCHHHHHHHHHH--HHHHc
Confidence 589999999999988 55444
No 445
>PRK06547 hypothetical protein; Provisional
Probab=83.97 E-value=0.63 Score=40.16 Aligned_cols=15 Identities=47% Similarity=0.395 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+.++.
T Consensus 23 ~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 23 RSGSGKTTLAGALAA 37 (172)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.77 E-value=2.6 Score=38.15 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCCC-----CChhcHHHHHHHHHHHcCCceEEEEEeCC
Q 046115 39 RIARAIIESLTPGSA-----KDLVEFQSLMQHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 39 ~~~~~l~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlvlDdv 82 (505)
+...++++..+.... .+.+.-.+..-.+.+.+..++=+|++|.-
T Consensus 109 ~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 109 ERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred HHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 455666666654332 22233333444466667677778888875
No 447
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=83.74 E-value=3.6 Score=41.17 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVE-RNFEKRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+.++++. .. .+-+.++++-+++.. +..++..++..
T Consensus 147 ~G~GKt~l~~~~~~~--~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~ 191 (449)
T TIGR03305 147 AGVGKTVLLTEMIHN--MVGQHQGVSIFCGIGERCREGEELYREMKE 191 (449)
T ss_pred CCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHhh
Confidence 699999999998873 32 223567788776654 44455555544
No 448
>PRK00279 adk adenylate kinase; Reviewed
Probab=83.72 E-value=3.8 Score=36.82 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~pGsGKsT~a~~la~ 22 (215)
T PRK00279 8 PPGAGKGTQAKFIAE 22 (215)
T ss_pred CCCCCHHHHHHHHHH
Confidence 489999999999987
No 449
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=83.65 E-value=4.8 Score=37.36 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhcCcccccC-CCceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
+|+|||++|..++. ....+ -..++|++..-+ ..++...++...
T Consensus 28 pg~GKT~~~l~ia~--~~a~~~~~~vly~SlEm~--~~~l~~R~la~~ 71 (259)
T PF03796_consen 28 PGVGKTAFALQIAL--NAALNGGYPVLYFSLEMS--EEELAARLLARL 71 (259)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTSSEEEEEESSS---HHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHH--HHHHhcCCeEEEEcCCCC--HHHHHHHHHHHh
Confidence 79999999999998 44443 267777776543 345555555544
No 450
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=83.55 E-value=4.5 Score=41.27 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+||+++|+.+... -.+.....+-+++... ..+.+...+ ++. .......... ...........-.|+||+
T Consensus 166 ~GtGK~~~A~~ih~~--~~~~~~~~~~~~c~~~--~~~~~~~~l--fg~-~~~~~~~~~~--~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 166 SGTGKELVARALHRH--SPRANGPFIALNMAAI--PKDLIESEL--FGH-EKGAFTGANT--RRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCeEEEeCCCC--CHHHHHHHh--cCC-CCCCCCCccc--CCCCcEEECCCCeEEEEc
Confidence 699999999999872 2222233344555543 223333322 221 0000000000 000001111234588999
Q ss_pred CCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 82 VWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|..-.......+...+.... .+++||.||..
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 97766555566666554321 24578887764
No 451
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=83.51 E-value=0.87 Score=39.41 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
-||+||||+|..++. ..+++=..++-|+...
T Consensus 8 kgG~GKtt~a~~la~--~l~~~g~~vllvD~D~ 38 (179)
T cd02036 8 KGGVGKTTTTANLGT--ALAQLGYKVVLIDADL 38 (179)
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCeEEEEeCCC
Confidence 389999999999987 5544433455565443
No 452
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.50 E-value=7.9 Score=34.37 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcC
Q 046115 2 GGIGKTTLAQFAYNN 16 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~ 16 (505)
.|+|||||++.++..
T Consensus 42 nGsGKSTLl~~l~G~ 56 (202)
T cd03233 42 PGSGCSTLLKALANR 56 (202)
T ss_pred CCCCHHHHHHHhccc
Confidence 699999999999873
No 453
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=83.39 E-value=3.4 Score=32.94 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=18.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC 30 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~ 30 (505)
.||+|||+++..++. ....+-..+.-++
T Consensus 7 kgG~GKTt~a~~la~--~l~~~g~~V~~id 34 (116)
T cd02034 7 KGGVGKTTIAALLAR--YLAEKGKPVLAID 34 (116)
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 389999999999987 4443322344454
No 454
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=83.38 E-value=3.9 Score=35.53 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCc-cChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 76 LLVLDDVWNEDY-YKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 76 LlvlDdv~~~~~-~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
++|+|++..... .....+...+.....+.++++.|-.+
T Consensus 132 ~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 132 LVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred EEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 899999866432 12222222222223445566655543
No 455
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=83.33 E-value=11 Score=34.82 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC--CCCcEEEEEeCchHHHHH
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS--LHESKILITTRKETVARI 118 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~ 118 (505)
.+...+..++-++++|...+. +......+...+... ..+..||++|-+......
T Consensus 130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~ 186 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMA 186 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 345555566779999997543 222223333333321 125678888888765543
No 456
>PRK05922 type III secretion system ATPase; Validated
Probab=83.33 E-value=2.4 Score=42.25 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-CCHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-FDEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEEC 69 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~~ 69 (505)
.|+|||||++.++. .. +.+..+.+-+++. .+..+.+.+......... ..+.....+. .-.+.+.
T Consensus 166 nG~GKSTLL~~Ia~--~~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEy 241 (434)
T PRK05922 166 PGSGKSSLLSTIAK--GS--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEY 241 (434)
T ss_pred CCCChHHHHHHHhc--cC--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999997 32 2233333334442 333455545444332111 0111111111 1112222
Q ss_pred c--CCceEEEEEeCCCC
Q 046115 70 V--AGKKFLLVLDDVWN 84 (505)
Q Consensus 70 l--~~~r~LlvlDdv~~ 84 (505)
+ .++++|+++||+.+
T Consensus 242 frd~G~~VLl~~DslTR 258 (434)
T PRK05922 242 FRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHcCCCEEEeccchhH
Confidence 2 47899999999944
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=83.23 E-value=4.5 Score=37.12 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCC--CceEEE-------EeCCCCCHHH--HHHHHHHHcCCCCCCCh--------hcHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF--EKRTWV-------CVSEPFDEFR--IARAIIESLTPGSAKDL--------VEFQS 61 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f--~~~~wv-------~~~~~~~~~~--~~~~l~~~l~~~~~~~~--------~~~~~ 61 (505)
|+|+||||+.+++... ...++ ..++=+ ...-..++++ -.++.+.+...+.+... ...++
T Consensus 27 MAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~tk~dq 104 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFATKFDQ 104 (366)
T ss_pred cCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHH
Confidence 8999999999888763 32332 223222 2233345554 34577777665554432 34455
Q ss_pred HHHHHHHHcCCceEEEE
Q 046115 62 LMQHIEECVAGKKFLLV 78 (505)
Q Consensus 62 ~~~~l~~~l~~~r~Llv 78 (505)
.+..+.+.-....|.||
T Consensus 105 v~~~iek~~~~~~~~li 121 (366)
T KOG1532|consen 105 VIELIEKRAEEFDYVLI 121 (366)
T ss_pred HHHHHHHhhcccCEEEE
Confidence 55566655544455443
No 458
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.17 E-value=11 Score=34.68 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
.-.+.+.+..++-++++|..... +......+...+.....+..||++|.+.....
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 34455566667779999997442 22223334444433223667888888866543
No 459
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=83.07 E-value=2.8 Score=35.98 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVS 32 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~ 32 (505)
||+||||+|..++. ..+..=..++-|+..
T Consensus 9 gG~GKTt~a~~LA~--~la~~g~~vllvD~D 37 (169)
T cd02037 9 GGVGKSTVAVNLAL--ALAKLGYKVGLLDAD 37 (169)
T ss_pred CcCChhHHHHHHHH--HHHHcCCcEEEEeCC
Confidence 89999999988887 443322234445543
No 460
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.99 E-value=1.5 Score=39.31 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++.. -.+++=..+.=|+...+++.
T Consensus 9 GG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 9 GGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred CCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCCh
Confidence 899999999885541 23333123445676665554
No 461
>PRK03846 adenylylsulfate kinase; Provisional
Probab=82.97 E-value=1 Score=40.00 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||||+.+..
T Consensus 32 ~~GsGKSTla~~l~~ 46 (198)
T PRK03846 32 LSGSGKSTVAGALEE 46 (198)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 462
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.93 E-value=1.3 Score=42.23 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
.||+||||+|.+.+- ..+.....++=|+.....+.
T Consensus 10 KGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 10 KGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCch
Confidence 389999999988765 34444344555554444333
No 463
>PLN03211 ABC transporter G-25; Provisional
Probab=82.91 E-value=9.5 Score=40.79 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchH--HHHHhCC------cceEeCCCCChhhHH
Q 046115 67 EECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKET--VARIMGS------THVISVNVLSEMECW 136 (505)
Q Consensus 67 ~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~--~~~~~~~------~~~~~l~~l~~~ea~ 136 (505)
...+-.++-++++|.-... +......+.+.+... ..|..||+||-+.. +...++. .+++.- =+.+++.
T Consensus 218 a~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~--G~~~~~~ 295 (659)
T PLN03211 218 AHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF--GKGSDAM 295 (659)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE--CCHHHHH
Confidence 3334445568999997442 222222333333321 13567888887754 3332222 112222 2567888
Q ss_pred HHHHHhhhCCC
Q 046115 137 SVFQSLAISGK 147 (505)
Q Consensus 137 ~Lf~~~~~~~~ 147 (505)
+.|....+...
T Consensus 296 ~~f~~~G~~~P 306 (659)
T PLN03211 296 AYFESVGFSPS 306 (659)
T ss_pred HHHHHCCCCCC
Confidence 88887654433
No 464
>PRK08506 replicative DNA helicase; Provisional
Probab=82.90 E-value=8.5 Score=39.29 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
.+|+|||++|..++.. ...+=..+++++.. -+..++...++...
T Consensus 200 rpg~GKT~fal~ia~~--~~~~g~~V~~fSlE--Ms~~ql~~Rlla~~ 243 (472)
T PRK08506 200 RPSMGKTTLCLNMALK--ALNQDKGVAFFSLE--MPAEQLMLRMLSAK 243 (472)
T ss_pred CCCCChHHHHHHHHHH--HHhcCCcEEEEeCc--CCHHHHHHHHHHHh
Confidence 3799999999999873 33222345566544 35566666666544
No 465
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=82.89 E-value=10 Score=39.20 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeCC
Q 046115 62 LMQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVN 128 (505)
Q Consensus 62 ~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l~ 128 (505)
..-.|.+.|-.++=+|+||.-.+. +.....-+..++. ..+| .+||.|-++..+..+... ++++.
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V~t~-I~~ld 224 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNVATH-ILELD 224 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHHhhh-eEEec
Confidence 334466666667779999987553 2222233333333 3445 799999999887765432 44443
No 466
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=82.87 E-value=0.71 Score=38.66 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTP 50 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 50 (505)
++|+||||+|+.+++. ..-. +++.+ .++++++++.+.
T Consensus 8 ~pGsG~TTva~~lAe~--~gl~-----~vsaG------~iFR~~A~e~gm 44 (179)
T COG1102 8 LPGSGKTTVARELAEH--LGLK-----LVSAG------TIFREMARERGM 44 (179)
T ss_pred CCCCChhHHHHHHHHH--hCCc-----eeecc------HHHHHHHHHcCC
Confidence 4899999999999982 2111 23333 567888888874
No 467
>PRK04040 adenylate kinase; Provisional
Probab=82.80 E-value=0.83 Score=40.09 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.++.
T Consensus 10 ~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 10 VPGVGKTTVLNKALE 24 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999988
No 468
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=82.76 E-value=3.3 Score=42.80 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
.|+|||++|+.+.+. -...-...+.|++...++ ..+..++..... +....... .....+. ..+ .--|+||+
T Consensus 219 ~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~-g~~~ga~~--~~~g~~~--~a~-gGtL~lde 289 (509)
T PRK05022 219 TGVGKELVARAIHAA--SPRADKPLVYLNCAALPE-SLAESELFGHVK-GAFTGAIS--NRSGKFE--LAD-GGTLFLDE 289 (509)
T ss_pred CCccHHHHHHHHHHh--CCcCCCCeEEEEcccCCh-HHHHHHhcCccc-cccCCCcc--cCCcchh--hcC-CCEEEecC
Confidence 699999999999873 222223445677776543 112222221111 00000000 0000111 112 23478999
Q ss_pred CCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 82 VWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|..-......++...+.... ...+||.||..
T Consensus 290 I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 290 IGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 97766555666666654322 24578887764
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.73 E-value=9.6 Score=39.67 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEe
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITT 110 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTt 110 (505)
.+.+.+-+++=++|||+..+. |...-..+.+.+....++..+|+.|
T Consensus 480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 355555556678899998553 3233444555555544444555444
No 470
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=82.73 E-value=4.5 Score=40.45 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCC------CCChhcHHHH-----HHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGS------AKDLVEFQSL-----MQHIEEC 69 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~------~~~~~~~~~~-----~~~l~~~ 69 (505)
+|+|||||++.+++ ... .+.++++-+++.. +..++....+..-+... ..+.....+. .-.+.+.
T Consensus 167 sG~GKTtLL~~I~~--~~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 167 SGVGKSVLLSMLAR--NAD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCCCHHHHHHHHHh--ccC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999987 222 2345555555543 44455544444321100 1111111111 1112222
Q ss_pred c--CCceEEEEEeCCCC
Q 046115 70 V--AGKKFLLVLDDVWN 84 (505)
Q Consensus 70 l--~~~r~LlvlDdv~~ 84 (505)
+ .++++|+++||+.+
T Consensus 243 frd~G~~Vll~~DslTr 259 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHCCCcEEEEEeCcHH
Confidence 2 47899999999944
No 471
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=82.67 E-value=1.2 Score=41.57 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. .....=..++=|++..+.+.
T Consensus 10 GGvGKTT~~~nLA~--~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 10 GGIGKSTTTQNLSA--ALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred CcCCHHHHHHHHHH--HHHhCCCeEEEEEcCCCCCc
Confidence 89999999988877 44432124556776655443
No 472
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=82.57 E-value=0.75 Score=40.10 Aligned_cols=15 Identities=27% Similarity=0.120 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 7 ~pGsGKst~a~~la~ 21 (183)
T TIGR01359 7 GPGSGKGTQCAKIVE 21 (183)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 473
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=82.55 E-value=4 Score=33.75 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHhcCcccc
Q 046115 2 GGIGKTTLAQFAYNNGDVE 20 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~ 20 (505)
+|+||||++.+++. +..
T Consensus 4 sG~GKStvg~~lA~--~lg 20 (161)
T COG3265 4 SGSGKSTVGSALAE--RLG 20 (161)
T ss_pred CccCHHHHHHHHHH--HcC
Confidence 69999999999998 554
No 474
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=82.44 E-value=0.93 Score=37.45 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 7 psGsGKstl~~~L~~ 21 (137)
T cd00071 7 PSGVGKSTLLKRLLE 21 (137)
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999998
No 475
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=82.40 E-value=10 Score=34.79 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcC-CCCCcEEEEEeCchHHHHH
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKN-SLHESKILITTRKETVARI 118 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~-~~~~~~iLiTtr~~~~~~~ 118 (505)
.+.+.+...+-++++|..... +......+...+.. ...+..||++|-+......
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 344555556778899997442 22222333332222 1235678899988766554
No 476
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=82.38 E-value=11 Score=35.80 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVAR 117 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~ 117 (505)
+.+.+-.++-++++|.-.+. +......+...+.....+..||+||.+.....
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 44555567789999997442 22222333333333223567999998876443
No 477
>PRK13949 shikimate kinase; Provisional
Probab=82.30 E-value=0.81 Score=39.39 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
|+|+||||+++.++.
T Consensus 9 ~~GsGKstl~~~La~ 23 (169)
T PRK13949 9 YMGAGKTTLGKALAR 23 (169)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999998
No 478
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=82.22 E-value=1 Score=41.19 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. .....|..++.-..-+.
T Consensus 11 GGtGKTTva~~la~--~l~~~~~~~l~DcDVe~ 41 (284)
T COG1149 11 GGTGKTTVAANLAV--LLGDKYKLVLADCDVEA 41 (284)
T ss_pred CCCChhhHHHHHHH--HhccccceEEEecCCCC
Confidence 89999999999988 77777877665433333
No 479
>PHA00729 NTP-binding motif containing protein
Probab=82.20 E-value=0.77 Score=41.24 Aligned_cols=15 Identities=40% Similarity=0.288 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||+||..+++
T Consensus 25 ~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 25 KQGSGKTTYALKVAR 39 (226)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999988
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.16 E-value=7.5 Score=34.17 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCC-CCCcEEEEEeCchH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNS-LHESKILITTRKET 114 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~-~~~~~iLiTtr~~~ 114 (505)
.-.+.+.+..++-++++|..... +......+...+... ..+..||++|.+..
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 33455556666778889986442 222223333333321 23567888888764
No 481
>PRK06696 uridine kinase; Validated
Probab=82.11 E-value=0.79 Score=41.54 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||+.++.
T Consensus 30 ~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 30 ITASGKTTFADELAE 44 (223)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999997
No 482
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.07 E-value=8 Score=36.06 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC--CceEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA--GKKFLLV 78 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~Llv 78 (505)
+|+||||+++.++. ....+=..+.+++..... .....+......++.+... ..+.....+.+.. ++ ++.=+++
T Consensus 84 ~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~-~~~~~~l~~~l~~-l~~~~~~D~Vi 159 (270)
T PRK06731 84 TGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-VRDEAAMTRALTY-FKEEARVDYIL 159 (270)
T ss_pred CCCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEe-cCCHHHHHHHHHH-HHhcCCCCEEE
Confidence 79999999998877 333322234456554332 2222333333333322111 1223333333322 22 2457889
Q ss_pred EeCCCCC
Q 046115 79 LDDVWNE 85 (505)
Q Consensus 79 lDdv~~~ 85 (505)
+|-....
T Consensus 160 IDt~Gr~ 166 (270)
T PRK06731 160 IDTAGKN 166 (270)
T ss_pred EECCCCC
Confidence 9998554
No 483
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=82.05 E-value=1.6 Score=40.68 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ...+.= .++=++.-.+
T Consensus 11 GGvGKTT~a~nLA~--~La~~G-rVLliD~Dpq 40 (264)
T PRK13231 11 GGIGKSTTVSNMAA--AYSNDH-RVLVIGCDPK 40 (264)
T ss_pred CCCcHHHHHHHHhc--ccCCCC-EEEEEeEccC
Confidence 89999999999988 444332 4555665544
No 484
>PRK06761 hypothetical protein; Provisional
Probab=82.04 E-value=1.7 Score=40.70 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 11 ~~GsGKTTla~~L~~ 25 (282)
T PRK06761 11 LPGFGKSTTAKMLND 25 (282)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 485
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=81.96 E-value=0.8 Score=40.05 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
+|+||||+|+.++.
T Consensus 8 sgsGKTtla~~l~~ 21 (187)
T cd02024 8 TNSGKTTLAKLLQR 21 (187)
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999988
No 486
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=81.91 E-value=1.8 Score=36.60 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
-|.||||+|..+.+- .. ++.++-==++... ....+.+.+++.+
T Consensus 8 iGCGKTTva~aL~~L--Fg-~wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNL--FG-EWGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHH--cC-CCCccccCCCCCC-CHHHHHHHHHHHH
Confidence 599999999999882 21 1211111123223 4556666666666
No 487
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=81.82 E-value=6.2 Score=34.95 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=27.2
Q ss_pred CceEEEEEeCCCCCCccC-h----hHHHHhhcCCCCCcEEEEEeCchHHHHHh
Q 046115 72 GKKFLLVLDDVWNEDYYK-W----EPFYKCLKNSLHESKILITTRKETVARIM 119 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~-~----~~~~~~~~~~~~~~~iLiTtr~~~~~~~~ 119 (505)
.++-++++|......+.. . ..+...+. ..+..+|++|-+.+.....
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 378899999974422111 1 12233333 2367899999987766554
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.81 E-value=1.4 Score=42.10 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
||+||||+|..++-
T Consensus 10 GGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 10 GGVGKTTVAAALAL 23 (305)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 89999999988776
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=81.78 E-value=0.86 Score=39.59 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||||+.++.
T Consensus 9 ~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 9 PSGAGKDTLLDYARA 23 (179)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 490
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=81.64 E-value=4.9 Score=40.12 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-PFDEFRIARAII 45 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~ 45 (505)
+|+|||||++.+++ .. +.+..++.-+++ .....+.+.+..
T Consensus 164 sG~GKSTLL~~I~~--~~--~~d~~vi~~iGeRgrEv~efl~~~~ 204 (433)
T PRK07594 164 PGVGKSTLLAMLCN--AP--DADSNVLVLIGERGREVREFIDFTL 204 (433)
T ss_pred CCCCccHHHHHhcC--CC--CCCEEEEEEECCCchHHHHHHHHhh
Confidence 69999999999987 32 233445555554 344445555543
No 491
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=81.53 E-value=5.3 Score=37.47 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 65 HIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 65 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
.+.+.+-.++=++++|+.... +......+...+.....++.||++|-+......
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~ 202 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE 202 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence 344455556678999997542 222223333334433346778887777655443
No 492
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=81.52 E-value=17 Score=33.18 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.+.+..++-++++|+.... +......+...+.....+..||++|.+......
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRS 207 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 44455556679999997442 222233333333332224578888888765543
No 493
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=81.48 E-value=0.92 Score=38.90 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCC-ceEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 61 SLMQHIEECVAG-KKFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 61 ~~~~~l~~~l~~-~r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
+..+...+.+.. .-=|+|||.+-. ....+.+.+...+........+++|-|+.
T Consensus 83 ~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~ 139 (172)
T PF02572_consen 83 EGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA 139 (172)
T ss_dssp HHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC
Confidence 344555666654 455999999722 23345677777777777889999999984
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=81.41 E-value=0.88 Score=40.69 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||+.++.
T Consensus 14 ~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 14 GSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 495
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=81.36 E-value=0.91 Score=38.83 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 3 ~sGsGKSTla~~la~ 17 (163)
T PRK11545 3 VSGSGKSAVASEVAH 17 (163)
T ss_pred CCCCcHHHHHHHHHH
Confidence 479999999999987
No 496
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.32 E-value=0.93 Score=39.65 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 11 ~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 11 GPGSGKGTQCEKIVE 25 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999986
No 497
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=81.25 E-value=0.92 Score=38.16 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 7 ~~GsGKstla~~la~ 21 (154)
T cd00464 7 MMGAGKTTVGRLLAK 21 (154)
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=81.22 E-value=0.9 Score=40.67 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||+.++.
T Consensus 14 ~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 14 GSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 499
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=81.18 E-value=4.1 Score=41.17 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhcCcccccC-CCceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+..++. .+.+. =+.++++-+++.. +..++...+..
T Consensus 170 ~GvGKs~L~~~~~~--~~~~~~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 170 AGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred CCCChhHHHHHHHH--HHHHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence 69999999998887 32221 1566777777643 45666666655
No 500
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=81.15 E-value=3.7 Score=40.14 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCCcHHHHHHHHhcCccc--ccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDV--ERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~--~~~f~~~~wv~~~~~ 34 (505)
.+|+|||.||..++. +. ......+++++.+..
T Consensus 9 ~aGTGKTvla~~l~~--~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 9 GAGTGKTVLALNLAK--ELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred cCCcCHHHHHHHHHH--HhhccccCCceEEEEecch
Confidence 389999999999998 55 556667777776653
Done!