Query 046115
Match_columns 505
No_of_seqs 194 out of 3494
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-39 7.5E-44 334.0 21.8 288 1-311 160-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-32 5E-37 287.5 13.1 257 1-302 158-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-31 4.5E-36 304.2 21.0 279 1-309 155-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-29 4.8E-34 264.7 19.7 275 1-307 155-450 (591)
5 4fcg_A Uncharacterized protein 99.6 1.8E-14 6.2E-19 138.5 13.2 128 354-492 181-308 (328)
6 4fcg_A Uncharacterized protein 99.6 4.3E-14 1.5E-18 135.8 14.8 152 329-495 127-287 (328)
7 4ezg_A Putative uncharacterize 99.4 9.1E-13 3.1E-17 116.7 13.3 144 330-493 45-189 (197)
8 2qen_A Walker-type ATPase; unk 99.4 5.2E-12 1.8E-16 122.5 19.6 265 1-303 39-349 (350)
9 1ogq_A PGIP-2, polygalacturona 99.4 4.9E-13 1.7E-17 127.6 12.0 128 354-492 99-228 (313)
10 3e6j_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 121.0 11.8 130 330-474 41-172 (229)
11 1w5s_A Origin recognition comp 99.4 4.9E-12 1.7E-16 125.7 19.3 266 1-282 60-372 (412)
12 2v9t_B SLIT homolog 2 protein 99.4 1E-12 3.6E-17 118.4 11.1 129 330-473 33-164 (220)
13 3m19_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 118.7 13.7 149 330-493 36-187 (251)
14 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.1E-17 117.4 11.9 107 354-472 55-164 (220)
15 2ell_A Acidic leucine-rich nuc 99.4 9.3E-13 3.2E-17 113.4 9.9 132 354-497 22-159 (168)
16 1ogq_A PGIP-2, polygalacturona 99.4 7.6E-13 2.6E-17 126.3 9.8 148 330-492 102-251 (313)
17 2fna_A Conserved hypothetical 99.4 2.9E-11 1E-15 117.5 21.2 266 1-302 38-356 (357)
18 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.7E-17 113.9 8.9 129 352-496 15-151 (176)
19 2je0_A Acidic leucine-rich nuc 99.4 7.3E-13 2.5E-17 111.6 7.6 128 354-493 15-148 (149)
20 3rgz_A Protein brassinosteroid 99.4 2.1E-12 7E-17 138.8 12.8 86 408-493 627-712 (768)
21 3rfs_A Internalin B, repeat mo 99.3 4.3E-12 1.5E-16 118.5 12.1 147 330-493 64-213 (272)
22 2o6q_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 116.0 14.1 126 354-492 83-212 (270)
23 1ozn_A Reticulon 4 receptor; N 99.3 7.4E-12 2.5E-16 117.8 12.7 128 354-492 103-232 (285)
24 1ozn_A Reticulon 4 receptor; N 99.3 4.2E-12 1.5E-16 119.4 10.8 149 330-493 57-209 (285)
25 3rgz_A Protein brassinosteroid 99.3 4E-12 1.4E-16 136.5 11.9 137 348-493 410-546 (768)
26 2o6q_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 115.6 12.8 147 330-492 38-188 (270)
27 1p9a_G Platelet glycoprotein I 99.3 7E-12 2.4E-16 118.1 11.3 147 329-493 31-180 (290)
28 2z66_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 118.1 12.3 152 330-492 29-206 (306)
29 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 110.2 12.2 131 330-475 29-162 (208)
30 3m19_A Variable lymphocyte rec 99.3 9.8E-12 3.3E-16 114.6 11.6 143 332-493 17-163 (251)
31 3e6j_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 110.4 13.4 141 334-493 24-167 (229)
32 2z80_A TOLL-like receptor 2, v 99.3 2.6E-12 9E-17 124.8 7.5 150 330-493 53-206 (353)
33 4eco_A Uncharacterized protein 99.3 4.6E-12 1.6E-16 132.9 9.3 87 405-492 239-337 (636)
34 1h6t_A Internalin B; cell adhe 99.3 3.3E-11 1.1E-15 113.5 14.2 142 329-494 68-209 (291)
35 2ell_A Acidic leucine-rich nuc 99.3 7E-12 2.4E-16 107.9 8.7 132 330-480 25-165 (168)
36 4g8a_A TOLL-like receptor 4; l 99.3 7.8E-12 2.7E-16 131.4 10.9 148 330-491 53-203 (635)
37 1dce_A Protein (RAB geranylger 99.3 8.7E-12 3E-16 128.3 10.7 119 357-491 442-566 (567)
38 4ezg_A Putative uncharacterize 99.3 7.8E-12 2.7E-16 110.6 9.1 126 354-493 42-167 (197)
39 4ecn_A Leucine-rich repeat pro 99.3 3.5E-12 1.2E-16 136.8 7.9 151 330-493 449-627 (876)
40 4eco_A Uncharacterized protein 99.3 3.3E-12 1.1E-16 134.0 7.6 152 330-493 207-385 (636)
41 1xeu_A Internalin C; cellular 99.3 2.5E-11 8.6E-16 112.5 12.7 139 330-493 42-180 (263)
42 2z62_A TOLL-like receptor 4, v 99.3 2.2E-11 7.5E-16 113.9 12.4 147 330-491 29-179 (276)
43 1h6u_A Internalin H; cell adhe 99.3 2.7E-11 9.1E-16 115.2 13.0 140 330-493 86-225 (308)
44 1p9a_G Platelet glycoprotein I 99.3 3.8E-11 1.3E-15 113.0 13.6 146 329-493 55-203 (290)
45 3zyi_A Leucine-rich repeat-con 99.3 1.9E-11 6.4E-16 123.0 12.1 148 330-491 124-272 (452)
46 1h6t_A Internalin B; cell adhe 99.3 2.9E-11 9.9E-16 113.9 12.6 140 330-493 47-186 (291)
47 1h6u_A Internalin H; cell adhe 99.3 2.9E-11 9.9E-16 115.0 12.5 141 329-493 63-203 (308)
48 3rfs_A Internalin B, repeat mo 99.3 3.5E-11 1.2E-15 112.3 12.7 145 330-493 42-189 (272)
49 2z66_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 117.8 9.5 149 330-492 102-255 (306)
50 3zyj_A Leucine-rich repeat-con 99.3 2.4E-11 8.1E-16 121.8 12.2 128 354-492 134-262 (440)
51 4b8c_D Glucose-repressible alc 99.3 8.9E-12 3E-16 132.3 9.2 121 350-483 218-338 (727)
52 2v70_A SLIT-2, SLIT homolog 2 99.2 5E-11 1.7E-15 107.3 12.8 145 333-493 15-161 (220)
53 3zyj_A Leucine-rich repeat-con 99.2 3E-11 1E-15 121.1 12.4 149 330-493 137-287 (440)
54 3vq2_A TLR4, TOLL-like recepto 99.2 3E-11 1E-15 126.3 12.4 146 329-488 32-180 (606)
55 4b8c_D Glucose-repressible alc 99.2 7.4E-12 2.5E-16 132.9 7.6 137 330-482 225-362 (727)
56 3oja_A Leucine-rich immune mol 99.2 2.3E-11 7.8E-16 123.3 10.8 147 330-492 121-269 (487)
57 2o6s_A Variable lymphocyte rec 99.2 8.1E-11 2.8E-15 105.0 13.3 126 355-493 27-156 (208)
58 3zyi_A Leucine-rich repeat-con 99.2 5.2E-11 1.8E-15 119.8 13.2 148 330-492 76-249 (452)
59 2z81_A CD282 antigen, TOLL-lik 99.2 1E-11 3.4E-16 128.3 8.1 150 329-492 26-179 (549)
60 2v9t_B SLIT homolog 2 protein 99.2 8.4E-11 2.9E-15 105.9 12.8 140 336-493 18-160 (220)
61 3o53_A Protein LRIM1, AGAP0063 99.2 3.7E-11 1.3E-15 114.8 10.6 148 330-493 121-270 (317)
62 2id5_A Lingo-1, leucine rich r 99.2 4.4E-11 1.5E-15 121.2 11.8 148 330-491 33-182 (477)
63 3o53_A Protein LRIM1, AGAP0063 99.2 2.5E-11 8.6E-16 116.0 9.3 144 330-493 100-245 (317)
64 2z7x_B TOLL-like receptor 1, v 99.2 6E-11 2.1E-15 121.6 12.7 149 330-493 325-476 (520)
65 4ecn_A Leucine-rich repeat pro 99.2 8.1E-11 2.8E-15 126.3 14.0 125 357-493 674-814 (876)
66 1w8a_A SLIT protein; signaling 99.2 4.7E-11 1.6E-15 105.1 10.1 129 333-478 12-143 (192)
67 4g8a_A TOLL-like receptor 4; l 99.2 3.9E-11 1.3E-15 126.0 11.2 135 341-493 43-181 (635)
68 2z62_A TOLL-like receptor 4, v 99.2 5.7E-11 1.9E-15 111.1 10.7 126 356-493 28-157 (276)
69 2xot_A Amphoterin-induced prot 99.2 5.1E-11 1.8E-15 116.0 10.8 141 330-486 40-188 (361)
70 2je0_A Acidic leucine-rich nuc 99.2 2.5E-11 8.4E-16 102.1 7.4 124 330-469 18-148 (149)
71 2id5_A Lingo-1, leucine rich r 99.2 4.8E-11 1.7E-15 120.9 11.0 141 337-494 19-161 (477)
72 3vq2_A TLR4, TOLL-like recepto 99.2 3E-11 1E-15 126.4 9.7 130 352-492 420-552 (606)
73 1m9s_A Internalin B; cell inva 99.2 5.4E-11 1.8E-15 123.2 11.2 141 330-494 66-206 (605)
74 3oja_B Anopheles plasmodium-re 99.2 7E-11 2.4E-15 123.1 11.9 82 330-424 100-182 (597)
75 2xwt_C Thyrotropin receptor; s 99.2 5.6E-11 1.9E-15 108.6 9.8 126 354-491 78-211 (239)
76 1m9s_A Internalin B; cell inva 99.2 8.7E-11 3E-15 121.6 12.2 123 330-474 88-210 (605)
77 2xot_A Amphoterin-induced prot 99.2 6.4E-11 2.2E-15 115.3 10.7 140 334-492 23-170 (361)
78 1w8a_A SLIT protein; signaling 99.2 7.1E-11 2.4E-15 103.9 9.9 113 330-454 30-143 (192)
79 1xku_A Decorin; proteoglycan, 99.2 2.2E-10 7.6E-15 110.0 14.1 147 330-492 122-270 (330)
80 2xwt_C Thyrotropin receptor; s 99.2 4.5E-11 1.5E-15 109.2 8.7 148 330-493 32-187 (239)
81 2z63_A TOLL-like receptor 4, v 99.2 9.4E-11 3.2E-15 121.6 11.8 144 330-487 29-175 (570)
82 2z80_A TOLL-like receptor 2, v 99.2 6.6E-11 2.3E-15 114.9 9.8 140 337-494 39-183 (353)
83 2z81_A CD282 antigen, TOLL-lik 99.2 1E-10 3.5E-15 120.7 11.6 153 330-493 335-505 (549)
84 3oja_A Leucine-rich immune mol 99.2 3.4E-11 1.2E-15 122.0 7.8 144 330-493 100-245 (487)
85 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 100.7 10.6 128 333-478 11-141 (177)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.4E-10 4.7E-15 120.1 12.5 149 330-493 354-505 (562)
87 2wfh_A SLIT homolog 2 protein 99.2 1.8E-10 6.1E-15 101.4 11.2 122 334-474 15-139 (193)
88 2z7x_B TOLL-like receptor 1, v 99.2 9.9E-11 3.4E-15 120.0 11.0 104 356-472 21-126 (520)
89 3o6n_A APL1; leucine-rich repe 99.2 9.6E-11 3.3E-15 115.4 10.5 144 329-490 45-191 (390)
90 1a9n_A U2A', U2A'; complex (nu 99.2 7.4E-11 2.5E-15 102.3 8.5 125 330-473 20-152 (176)
91 1wwl_A Monocyte differentiatio 99.1 1.3E-10 4.3E-15 110.8 10.8 145 330-491 122-280 (312)
92 1wwl_A Monocyte differentiatio 99.1 9.4E-11 3.2E-15 111.7 9.7 148 329-493 149-304 (312)
93 3o6n_A APL1; leucine-rich repe 99.1 1.2E-10 3.9E-15 114.8 10.6 128 354-493 43-173 (390)
94 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.7E-17 116.4 -3.9 132 351-497 43-186 (198)
95 1ziw_A TOLL-like receptor 3; i 99.1 1.5E-10 5E-15 122.9 11.8 151 329-493 25-179 (680)
96 1fnn_A CDC6P, cell division co 99.1 3.4E-09 1.2E-13 104.2 20.8 289 1-308 52-386 (389)
97 1xeu_A Internalin C; cellular 99.1 9.8E-11 3.3E-15 108.5 9.0 121 353-493 38-158 (263)
98 1xku_A Decorin; proteoglycan, 99.1 2.8E-10 9.6E-15 109.3 12.4 145 330-493 101-248 (330)
99 3oja_B Anopheles plasmodium-re 99.1 1.3E-10 4.5E-15 121.1 10.7 146 329-491 51-198 (597)
100 2wfh_A SLIT homolog 2 protein 99.1 2.6E-10 8.9E-15 100.3 11.0 119 359-493 13-134 (193)
101 2v1u_A Cell division control p 99.1 4.1E-09 1.4E-13 103.5 20.8 263 1-282 52-352 (387)
102 3v47_A TOLL-like receptor 5B a 99.1 1.4E-10 4.7E-15 116.8 10.4 144 329-484 30-177 (455)
103 3j0a_A TOLL-like receptor 5; m 99.1 1.3E-10 4.4E-15 126.1 10.8 153 329-493 24-182 (844)
104 3v47_A TOLL-like receptor 5B a 99.1 1.8E-10 6.1E-15 115.9 11.1 135 330-478 276-412 (455)
105 4fmz_A Internalin; leucine ric 99.1 3.2E-10 1.1E-14 109.7 12.5 142 330-493 200-341 (347)
106 2z63_A TOLL-like receptor 4, v 99.1 9.6E-11 3.3E-15 121.5 9.2 133 352-493 392-526 (570)
107 2ft3_A Biglycan; proteoglycan, 99.1 2.4E-10 8.4E-15 109.9 11.2 143 330-492 55-200 (332)
108 1ziw_A TOLL-like receptor 3; i 99.1 2.7E-10 9.3E-15 120.7 12.3 148 330-491 50-201 (680)
109 2qby_B CDC6 homolog 3, cell di 99.1 1.4E-08 4.6E-13 99.7 23.3 262 1-283 53-341 (384)
110 3j0a_A TOLL-like receptor 5; m 99.1 3.4E-10 1.2E-14 122.8 12.7 150 330-493 49-212 (844)
111 4glp_A Monocyte differentiatio 99.1 1E-10 3.5E-15 111.3 7.6 148 330-492 146-301 (310)
112 2ft3_A Biglycan; proteoglycan, 99.1 2.2E-10 7.6E-15 110.2 9.5 137 330-473 124-276 (332)
113 3t6q_A CD180 antigen; protein- 99.1 3.9E-10 1.3E-14 117.9 12.0 156 330-492 279-456 (606)
114 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.6E-10 8.9E-15 118.0 10.6 122 332-473 34-158 (562)
115 4fmz_A Internalin; leucine ric 99.1 4.5E-10 1.5E-14 108.7 11.6 143 330-494 178-320 (347)
116 3t6q_A CD180 antigen; protein- 99.1 3.3E-10 1.1E-14 118.5 11.3 147 330-491 34-183 (606)
117 4glp_A Monocyte differentiatio 99.1 6.1E-10 2.1E-14 105.9 11.1 150 329-492 117-279 (310)
118 3bz5_A Internalin-J, INLJ; leu 99.0 9.2E-10 3.1E-14 110.5 11.4 135 330-493 65-199 (457)
119 1ds9_A Outer arm dynein; leuci 99.0 4.6E-12 1.6E-16 112.2 -4.8 107 375-493 40-148 (198)
120 2r9u_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 97.6 7.2 99 359-472 15-116 (174)
121 2ast_B S-phase kinase-associat 99.0 1.4E-10 4.8E-15 111.7 4.9 131 352-493 138-280 (336)
122 1o6v_A Internalin A; bacterial 99.0 1.9E-09 6.6E-14 108.7 13.3 139 330-492 244-382 (466)
123 2ast_B S-phase kinase-associat 99.0 1E-10 3.5E-15 112.7 3.7 157 329-496 93-258 (336)
124 1dce_A Protein (RAB geranylger 99.0 7.1E-10 2.4E-14 114.1 9.9 120 330-468 442-567 (567)
125 3cvr_A Invasion plasmid antige 99.0 8.2E-10 2.8E-14 113.1 9.7 128 330-486 121-255 (571)
126 1o6v_A Internalin A; bacterial 99.0 2.5E-09 8.6E-14 107.9 12.9 140 330-493 222-361 (466)
127 2ca6_A RAN GTPase-activating p 99.0 2.9E-10 1E-14 111.8 5.6 156 330-493 95-282 (386)
128 3cvr_A Invasion plasmid antige 99.0 6.2E-10 2.1E-14 114.0 7.4 132 329-493 100-238 (571)
129 2qby_A CDC6 homolog 1, cell di 99.0 1.8E-08 6.1E-13 98.8 17.5 263 1-282 53-349 (386)
130 3g06_A SSPH2 (leucine-rich rep 99.0 2.2E-09 7.5E-14 111.3 11.2 72 413-493 221-292 (622)
131 3bz5_A Internalin-J, INLJ; leu 99.0 2.7E-09 9.3E-14 107.0 11.5 135 330-493 86-220 (457)
132 2o6r_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 91.4 10.7 120 358-493 9-132 (177)
133 3g39_A Variable lymphocyte rec 98.9 3.8E-09 1.3E-13 90.7 9.8 100 359-473 12-114 (170)
134 3g06_A SSPH2 (leucine-rich rep 98.9 2.1E-09 7.3E-14 111.4 8.1 119 355-489 180-312 (622)
135 2ca6_A RAN GTPase-activating p 98.9 1.8E-09 6E-14 106.2 5.8 141 330-477 160-319 (386)
136 2r9u_A Variable lymphocyte rec 98.8 8.7E-09 3E-13 88.8 9.1 97 385-493 14-113 (174)
137 3g39_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 88.0 9.1 98 384-493 10-110 (170)
138 1njg_A DNA polymerase III subu 98.8 6.7E-08 2.3E-12 88.1 14.7 105 72-180 125-231 (250)
139 1jl5_A Outer protein YOPM; leu 98.8 1.8E-08 6.1E-13 101.0 10.6 124 330-480 132-255 (454)
140 1jl5_A Outer protein YOPM; leu 98.8 3.2E-08 1.1E-12 99.1 11.3 122 330-480 154-275 (454)
141 2chg_A Replication factor C sm 98.6 7.2E-07 2.5E-11 79.8 15.0 156 1-178 46-205 (226)
142 4ay9_X Follicle-stimulating ho 98.6 1.2E-07 3.9E-12 91.8 10.2 158 330-492 31-233 (350)
143 4ay9_X Follicle-stimulating ho 98.6 7.2E-08 2.5E-12 93.2 8.6 98 384-492 155-253 (350)
144 2ifg_A High affinity nerve gro 98.6 1E-07 3.6E-12 91.9 9.5 86 352-448 27-114 (347)
145 3goz_A Leucine-rich repeat-con 98.6 3.4E-08 1.2E-12 96.0 5.8 156 330-493 52-233 (362)
146 2ifg_A High affinity nerve gro 98.5 1.7E-07 5.8E-12 90.5 8.7 103 360-475 12-117 (347)
147 3goz_A Leucine-rich repeat-con 98.5 7.7E-08 2.6E-12 93.5 5.5 153 330-493 23-204 (362)
148 1z7x_W Ribonuclease inhibitor; 98.4 1.2E-07 4.3E-12 95.2 4.7 157 330-493 57-235 (461)
149 1z7x_W Ribonuclease inhibitor; 98.4 1.6E-07 5.4E-12 94.5 4.7 157 330-493 200-378 (461)
150 1sxj_B Activator 1 37 kDa subu 98.3 3.3E-06 1.1E-10 80.4 12.4 156 1-178 50-211 (323)
151 3ogk_B Coronatine-insensitive 98.2 1.4E-06 4.8E-11 90.5 7.6 132 354-493 190-326 (592)
152 3un9_A NLR family member X1; l 98.2 5.1E-07 1.7E-11 87.7 4.0 141 330-481 102-259 (372)
153 3ogk_B Coronatine-insensitive 98.1 2.6E-06 9E-11 88.4 7.5 155 330-493 193-350 (592)
154 2p1m_B Transport inhibitor res 98.0 1.7E-06 5.7E-11 89.9 3.4 149 330-490 106-270 (594)
155 1iqp_A RFCS; clamp loader, ext 98.0 1.6E-05 5.4E-10 75.8 9.6 104 72-179 109-214 (327)
156 3un9_A NLR family member X1; l 98.0 1.4E-06 4.7E-11 84.6 2.2 107 356-473 101-223 (372)
157 1jr3_A DNA polymerase III subu 98.0 9.1E-05 3.1E-09 71.9 14.4 103 72-178 118-222 (373)
158 3bos_A Putative DNA replicatio 97.9 1.7E-05 5.8E-10 71.8 7.9 146 1-178 60-218 (242)
159 1a5t_A Delta prime, HOLB; zinc 97.9 0.00014 4.9E-09 69.3 14.5 95 72-175 107-203 (334)
160 3rw6_A Nuclear RNA export fact 97.9 4.3E-06 1.5E-10 76.4 3.1 83 411-496 168-262 (267)
161 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.6E-10 73.9 5.6 98 361-467 148-257 (267)
162 2p1m_B Transport inhibitor res 97.9 5.6E-06 1.9E-10 85.9 3.8 133 354-494 182-347 (594)
163 3te6_A Regulatory protein SIR3 97.9 0.00033 1.1E-08 65.5 15.3 137 1-143 53-211 (318)
164 2chq_A Replication factor C sm 97.9 0.00011 3.8E-09 69.5 12.4 102 72-177 101-204 (319)
165 2z4s_A Chromosomal replication 97.9 3.3E-05 1.1E-09 76.6 8.7 154 1-176 138-305 (440)
166 3sb4_A Hypothetical leucine ri 97.8 2.8E-05 9.7E-10 74.1 7.9 76 412-492 225-304 (329)
167 3sb4_A Hypothetical leucine ri 97.8 4.2E-05 1.4E-09 72.9 8.2 122 355-491 201-327 (329)
168 1io0_A Tropomodulin; LRR prote 97.8 2.8E-05 9.7E-10 67.3 5.9 115 351-473 31-163 (185)
169 1hqc_A RUVB; extended AAA-ATPa 97.8 0.00015 5.2E-09 68.8 11.3 148 1-180 46-214 (324)
170 3pvs_A Replication-associated 97.8 0.00036 1.2E-08 69.1 14.2 150 1-176 58-214 (447)
171 3e4g_A ATP synthase subunit S, 97.6 2.6E-05 9E-10 66.0 3.5 87 382-475 60-153 (176)
172 3pfi_A Holliday junction ATP-d 97.6 0.0027 9.4E-08 60.4 17.3 145 1-178 63-228 (338)
173 1l8q_A Chromosomal replication 97.6 0.00092 3.2E-08 63.3 13.4 147 1-172 45-203 (324)
174 1sxj_E Activator 1 40 kDa subu 97.5 0.00038 1.3E-08 67.0 10.6 103 72-177 133-237 (354)
175 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0015 5E-08 59.8 13.9 154 1-178 47-223 (262)
176 1sxj_D Activator 1 41 kDa subu 97.5 0.0011 3.6E-08 63.7 13.5 100 72-175 132-233 (353)
177 3e4g_A ATP synthase subunit S, 97.5 5.5E-05 1.9E-09 64.1 3.7 89 355-452 60-154 (176)
178 2ra8_A Uncharacterized protein 97.5 0.00026 8.8E-09 68.1 8.9 135 330-474 173-320 (362)
179 1io0_A Tropomodulin; LRR prote 97.5 7.4E-05 2.5E-09 64.6 4.2 110 375-493 28-159 (185)
180 2ra8_A Uncharacterized protein 97.5 0.00018 6.3E-09 69.1 7.3 129 352-493 168-315 (362)
181 1jbk_A CLPB protein; beta barr 97.5 0.0004 1.4E-08 59.9 8.8 68 71-139 113-194 (195)
182 3uk6_A RUVB-like 2; hexameric 97.4 0.002 7E-08 62.1 13.7 97 74-175 190-301 (368)
183 1sxj_A Activator 1 95 kDa subu 97.3 0.0012 4E-08 67.0 11.9 161 1-178 85-254 (516)
184 3h4m_A Proteasome-activating n 97.3 0.0029 9.8E-08 58.6 13.7 150 1-176 59-230 (285)
185 1d2n_A N-ethylmaleimide-sensit 97.3 0.0038 1.3E-07 57.4 13.3 139 1-168 72-228 (272)
186 2qp9_X Vacuolar protein sortin 97.2 0.0037 1.3E-07 59.9 13.0 153 1-178 92-262 (355)
187 3u61_B DNA polymerase accessor 97.2 0.0015 5.1E-08 61.9 9.9 141 1-172 56-211 (324)
188 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0061 2.1E-07 57.5 13.9 155 1-179 53-225 (322)
189 3eie_A Vacuolar protein sortin 97.1 0.0035 1.2E-07 59.3 11.9 153 1-179 59-230 (322)
190 4fdw_A Leucine rich hypothetic 97.1 0.0013 4.6E-08 64.2 9.1 75 413-492 248-330 (401)
191 3syl_A Protein CBBX; photosynt 97.1 0.0036 1.2E-07 58.7 11.7 71 74-144 131-218 (309)
192 1sxj_C Activator 1 40 kDa subu 97.1 0.005 1.7E-07 58.6 12.6 96 73-172 110-207 (340)
193 2gno_A DNA polymerase III, gam 97.0 0.0014 4.8E-08 61.2 7.4 124 1-143 26-152 (305)
194 4b4t_J 26S protease regulatory 96.9 0.056 1.9E-06 52.0 17.8 143 1-170 190-354 (405)
195 2w58_A DNAI, primosome compone 96.9 0.00087 3E-08 58.6 5.0 93 1-112 62-158 (202)
196 3ec2_A DNA replication protein 96.9 0.0013 4.5E-08 56.3 5.8 93 1-112 46-142 (180)
197 3b9p_A CG5977-PA, isoform A; A 96.7 0.027 9.4E-07 52.2 14.4 150 1-178 62-234 (297)
198 2kjq_A DNAA-related protein; s 96.7 0.00099 3.4E-08 55.1 3.7 79 1-112 44-124 (149)
199 3d8b_A Fidgetin-like protein 1 96.7 0.012 3.9E-07 56.5 11.8 153 1-179 125-297 (357)
200 4fdw_A Leucine rich hypothetic 96.7 0.0051 1.7E-07 60.0 9.3 60 408-472 295-356 (401)
201 3n70_A Transport activator; si 96.7 0.0031 1.1E-07 51.7 6.6 84 1-112 32-115 (145)
202 3cf0_A Transitional endoplasmi 96.6 0.015 5.2E-07 54.2 11.8 145 1-171 57-222 (301)
203 2zan_A Vacuolar protein sortin 96.6 0.013 4.5E-07 57.9 11.7 154 1-178 175-346 (444)
204 2cvh_A DNA repair and recombin 96.5 0.0077 2.6E-07 53.1 8.4 78 1-84 28-116 (220)
205 4b4t_K 26S protease regulatory 96.5 0.015 5E-07 56.7 10.9 144 1-170 214-379 (428)
206 1in4_A RUVB, holliday junction 96.5 0.25 8.6E-06 46.6 19.3 48 124-175 174-221 (334)
207 4fcw_A Chaperone protein CLPB; 96.4 0.013 4.4E-07 54.9 9.4 103 1-112 55-169 (311)
208 3hu3_A Transitional endoplasmi 96.1 0.033 1.1E-06 55.6 11.4 150 1-176 246-414 (489)
209 4b4t_H 26S protease regulatory 96.1 0.043 1.5E-06 53.6 11.6 144 1-170 251-415 (467)
210 1lv7_A FTSH; alpha/beta domain 96.1 0.097 3.3E-06 47.3 13.5 150 1-176 53-224 (257)
211 4b4t_L 26S protease subunit RP 96.1 0.044 1.5E-06 53.5 11.6 143 1-170 223-387 (437)
212 3vfd_A Spastin; ATPase, microt 96.0 0.081 2.8E-06 51.2 13.5 103 72-178 206-327 (389)
213 3t15_A Ribulose bisphosphate c 96.0 0.051 1.7E-06 50.4 11.3 15 1-15 44-58 (293)
214 1g5t_A COB(I)alamin adenosyltr 96.0 0.0058 2E-07 52.4 4.3 110 2-113 37-163 (196)
215 2p65_A Hypothetical protein PF 96.0 0.007 2.4E-07 51.6 5.0 15 1-15 51-65 (187)
216 1ofh_A ATP-dependent HSL prote 95.9 0.11 3.6E-06 48.4 13.2 19 123-141 195-213 (310)
217 2bjv_A PSP operon transcriptio 95.9 0.027 9.1E-07 51.4 8.7 103 1-112 37-150 (265)
218 1qvr_A CLPB protein; coiled co 95.7 0.012 4.2E-07 63.4 6.4 124 1-142 199-344 (854)
219 4b4t_I 26S protease regulatory 95.5 0.036 1.2E-06 53.6 8.4 143 1-170 224-388 (437)
220 2ce7_A Cell division protein F 95.5 0.15 5.2E-06 50.5 13.2 144 1-170 57-221 (476)
221 1ojl_A Transcriptional regulat 95.5 0.063 2.2E-06 50.0 10.0 129 1-140 33-187 (304)
222 4fs7_A Uncharacterized protein 95.5 0.035 1.2E-06 53.9 8.5 98 379-490 293-393 (394)
223 4b4t_M 26S protease regulatory 95.5 0.033 1.1E-06 54.3 8.0 143 1-170 223-387 (434)
224 2x8a_A Nuclear valosin-contain 95.5 0.26 8.8E-06 45.0 13.7 121 1-143 52-191 (274)
225 3pxi_A Negative regulator of g 95.4 0.036 1.2E-06 58.9 8.9 120 1-142 529-674 (758)
226 2qgz_A Helicase loader, putati 95.4 0.0063 2.1E-07 57.0 2.4 29 1-31 160-189 (308)
227 3pxg_A Negative regulator of g 95.2 0.019 6.4E-07 57.2 5.6 67 71-143 265-338 (468)
228 3co5_A Putative two-component 95.1 0.012 4E-07 48.1 3.1 38 75-112 77-115 (143)
229 1n0w_A DNA repair protein RAD5 95.1 0.038 1.3E-06 49.4 6.9 83 1-84 32-130 (243)
230 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.0077 2.7E-07 55.9 2.0 61 1-84 131-193 (331)
231 3io5_A Recombination and repai 94.8 0.064 2.2E-06 49.6 7.4 77 1-84 36-122 (333)
232 2r62_A Cell division protease 94.8 0.0096 3.3E-07 54.5 1.8 72 72-143 102-196 (268)
233 3rfe_A Platelet glycoprotein I 94.7 0.05 1.7E-06 43.4 5.6 47 399-448 17-66 (130)
234 1xp8_A RECA protein, recombina 94.6 0.071 2.4E-06 50.9 7.4 77 1-84 82-163 (366)
235 3cf2_A TER ATPase, transitiona 94.5 0.13 4.3E-06 54.4 9.7 144 1-170 246-407 (806)
236 3m6a_A ATP-dependent protease 94.4 0.069 2.4E-06 54.2 7.3 41 103-143 224-266 (543)
237 4gt6_A Cell surface protein; l 94.3 0.13 4.6E-06 49.7 9.0 124 350-492 259-385 (394)
238 4h09_A Hypothetical leucine ri 94.3 0.21 7.2E-06 48.0 10.3 119 352-487 236-358 (379)
239 2c9o_A RUVB-like 1; hexameric 94.3 0.2 6.8E-06 49.6 10.2 94 75-172 297-405 (456)
240 2z43_A DNA repair and recombin 94.3 0.14 4.7E-06 48.2 8.6 48 1-49 115-166 (324)
241 1jr3_D DNA polymerase III, del 94.3 0.98 3.4E-05 42.6 14.8 102 71-176 74-184 (343)
242 4h09_A Hypothetical leucine ri 94.1 0.22 7.5E-06 47.8 10.1 124 352-492 213-340 (379)
243 1v5w_A DMC1, meiotic recombina 94.1 0.11 3.7E-06 49.3 7.7 48 1-49 130-181 (343)
244 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.2 6.8E-06 44.2 9.1 108 1-113 31-168 (235)
245 1r6b_X CLPA protein; AAA+, N-t 93.9 0.086 2.9E-06 56.1 7.0 100 1-112 496-607 (758)
246 3hr8_A Protein RECA; alpha and 93.8 0.098 3.4E-06 49.6 6.5 77 1-84 69-150 (356)
247 3rfe_A Platelet glycoprotein I 93.6 0.11 3.6E-06 41.5 5.5 34 384-424 32-66 (130)
248 1r6b_X CLPA protein; AAA+, N-t 93.5 0.21 7.2E-06 53.0 9.3 125 1-143 215-362 (758)
249 3pxi_A Negative regulator of g 93.5 0.07 2.4E-06 56.7 5.5 67 71-143 265-338 (758)
250 2b8t_A Thymidine kinase; deoxy 93.4 0.038 1.3E-06 48.7 2.7 104 2-113 21-126 (223)
251 1iy2_A ATP-dependent metallopr 93.3 2.5 8.6E-05 38.3 15.2 143 1-170 81-245 (278)
252 2i1q_A DNA repair and recombin 93.2 0.16 5.3E-06 47.8 7.0 48 1-49 106-167 (322)
253 1qvr_A CLPB protein; coiled co 93.2 0.12 4.2E-06 55.6 7.0 103 1-112 596-710 (854)
254 1ixz_A ATP-dependent metallopr 92.9 2.5 8.7E-05 37.6 14.4 143 1-170 57-221 (254)
255 2zr9_A Protein RECA, recombina 92.6 0.23 8E-06 47.1 7.2 77 1-84 69-150 (349)
256 1u94_A RECA protein, recombina 92.4 0.2 6.8E-06 47.6 6.4 77 1-84 71-152 (356)
257 2dhr_A FTSH; AAA+ protein, hex 92.3 1.2 4E-05 44.4 12.0 140 1-170 72-236 (499)
258 2r44_A Uncharacterized protein 92.1 0.27 9.1E-06 46.3 7.0 69 75-143 111-198 (331)
259 1um8_A ATP-dependent CLP prote 91.9 0.29 9.8E-06 47.0 7.0 15 1-15 80-94 (376)
260 1pzn_A RAD51, DNA repair and r 91.8 0.25 8.5E-06 46.9 6.3 83 1-84 139-242 (349)
261 3bh0_A DNAB-like replicative h 91.1 0.67 2.3E-05 43.2 8.4 43 1-47 76-118 (315)
262 1sky_E F1-ATPase, F1-ATP synth 90.4 0.44 1.5E-05 46.7 6.6 42 2-45 160-203 (473)
263 4a74_A DNA repair and recombin 90.0 0.76 2.6E-05 40.3 7.5 36 1-36 33-72 (231)
264 4gt6_A Cell surface protein; l 89.9 0.94 3.2E-05 43.6 8.7 102 378-492 260-364 (394)
265 4fs7_A Uncharacterized protein 89.9 1.1 3.8E-05 43.1 9.1 126 351-492 66-215 (394)
266 1pgv_A TMD-1, tropomodulin TMD 89.7 0.34 1.2E-05 41.5 4.6 111 354-472 39-168 (197)
267 3cf2_A TER ATPase, transitiona 89.5 0.92 3.1E-05 47.9 8.5 144 1-170 519-683 (806)
268 1qhx_A CPT, protein (chloramph 89.3 0.12 4.3E-06 43.4 1.6 15 1-15 11-25 (178)
269 3lda_A DNA repair protein RAD5 89.1 0.8 2.7E-05 44.2 7.3 48 1-49 186-237 (400)
270 1ypw_A Transitional endoplasmi 87.5 0.59 2E-05 49.8 5.7 122 1-143 246-385 (806)
271 2orw_A Thymidine kinase; TMTK, 87.0 0.099 3.4E-06 44.6 -0.5 40 70-112 73-112 (184)
272 2ck3_D ATP synthase subunit be 86.7 2.2 7.4E-05 41.8 8.6 44 2-47 162-207 (482)
273 3kb2_A SPBC2 prophage-derived 86.5 0.25 8.7E-06 41.1 1.8 15 1-15 9-23 (173)
274 1ly1_A Polynucleotide kinase; 86.5 0.26 8.9E-06 41.4 1.9 15 1-15 10-24 (181)
275 3cwq_A Para family chromosome 86.4 0.56 1.9E-05 40.7 4.0 33 2-37 10-42 (209)
276 3ice_A Transcription terminati 86.0 0.24 8.2E-06 47.1 1.5 75 1-82 182-270 (422)
277 3hjn_A DTMP kinase, thymidylat 85.7 1.1 3.7E-05 38.5 5.4 43 2-46 9-51 (197)
278 1zp6_A Hypothetical protein AT 85.4 0.34 1.2E-05 41.2 2.1 15 1-15 17-31 (191)
279 3lw7_A Adenylate kinase relate 85.4 0.33 1.1E-05 40.5 1.9 13 1-13 9-21 (179)
280 1nks_A Adenylate kinase; therm 85.3 0.48 1.6E-05 40.2 3.0 15 1-15 9-23 (194)
281 2qe7_A ATP synthase subunit al 85.3 0.82 2.8E-05 45.0 4.9 75 2-82 171-263 (502)
282 3trf_A Shikimate kinase, SK; a 85.3 0.32 1.1E-05 41.2 1.8 15 1-15 13-27 (185)
283 4dzz_A Plasmid partitioning pr 85.1 0.55 1.9E-05 40.4 3.4 34 2-37 11-44 (206)
284 1fx0_B ATP synthase beta chain 85.1 3.1 0.0001 40.9 8.8 43 2-46 174-218 (498)
285 3vaa_A Shikimate kinase, SK; s 85.1 0.33 1.1E-05 41.7 1.9 15 1-15 33-47 (199)
286 1kag_A SKI, shikimate kinase I 84.7 0.36 1.2E-05 40.3 1.9 15 1-15 12-26 (173)
287 2r8r_A Sensor protein; KDPD, P 84.7 0.67 2.3E-05 40.6 3.6 31 1-33 14-44 (228)
288 1via_A Shikimate kinase; struc 84.6 0.37 1.3E-05 40.4 1.9 15 1-15 12-26 (175)
289 2yvu_A Probable adenylyl-sulfa 84.3 0.52 1.8E-05 39.9 2.7 15 1-15 21-35 (186)
290 1kht_A Adenylate kinase; phosp 84.1 0.39 1.3E-05 40.7 1.9 15 1-15 11-25 (192)
291 2rhm_A Putative kinase; P-loop 83.9 0.4 1.4E-05 40.8 1.8 15 1-15 13-27 (193)
292 2r9v_A ATP synthase subunit al 83.8 1.2 3.9E-05 44.0 5.2 75 2-82 184-276 (515)
293 3t61_A Gluconokinase; PSI-biol 83.6 0.41 1.4E-05 41.2 1.8 15 1-15 26-40 (202)
294 3kjh_A CO dehydrogenase/acetyl 83.5 0.73 2.5E-05 41.0 3.5 35 2-38 9-43 (254)
295 3vr4_D V-type sodium ATPase su 83.2 1.5 5.3E-05 42.6 5.7 43 2-46 160-207 (465)
296 3dm5_A SRP54, signal recogniti 83.1 11 0.00039 36.5 11.8 15 1-15 108-122 (443)
297 4a1f_A DNAB helicase, replicat 83.0 3.6 0.00012 38.5 8.1 43 1-47 54-96 (338)
298 3iij_A Coilin-interacting nucl 82.9 0.47 1.6E-05 40.0 1.8 15 1-15 19-33 (180)
299 1zuh_A Shikimate kinase; alpha 82.7 0.49 1.7E-05 39.3 1.9 15 1-15 15-29 (168)
300 2jaq_A Deoxyguanosine kinase; 82.6 0.49 1.7E-05 40.6 1.9 15 1-15 8-22 (205)
301 2ze6_A Isopentenyl transferase 82.5 0.49 1.7E-05 42.6 1.9 15 1-15 9-23 (253)
302 3uie_A Adenylyl-sulfate kinase 82.5 0.49 1.7E-05 40.7 1.8 15 1-15 33-47 (200)
303 3cmu_A Protein RECA, recombina 82.3 1.8 6.3E-05 50.2 6.7 77 1-84 391-472 (2050)
304 3cmu_A Protein RECA, recombina 82.3 0.8 2.7E-05 53.1 3.8 76 1-83 1435-1515(2050)
305 3l0o_A Transcription terminati 82.2 0.21 7.3E-06 47.4 -0.6 31 2-34 184-216 (427)
306 3cm0_A Adenylate kinase; ATP-b 82.1 0.52 1.8E-05 39.8 1.9 15 1-15 12-26 (186)
307 1knq_A Gluconate kinase; ALFA/ 82.0 0.53 1.8E-05 39.4 1.8 15 1-15 16-30 (175)
308 2iyv_A Shikimate kinase, SK; t 82.0 0.53 1.8E-05 39.8 1.8 15 1-15 10-24 (184)
309 1e6c_A Shikimate kinase; phosp 81.8 0.55 1.9E-05 39.1 1.9 15 1-15 10-24 (173)
310 1vma_A Cell division protein F 81.7 1.3 4.4E-05 41.0 4.5 82 1-84 112-197 (306)
311 1pgv_A TMD-1, tropomodulin TMD 81.7 2 6.9E-05 36.7 5.3 112 375-493 33-165 (197)
312 2pt5_A Shikimate kinase, SK; a 81.4 0.59 2E-05 38.7 1.9 15 1-15 8-22 (168)
313 1ex7_A Guanylate kinase; subst 81.3 0.44 1.5E-05 40.5 1.0 15 1-15 9-23 (186)
314 2qor_A Guanylate kinase; phosp 81.3 0.58 2E-05 40.4 1.9 15 1-15 20-34 (204)
315 3kl4_A SRP54, signal recogniti 81.2 12 0.0004 36.4 11.2 15 1-15 105-119 (433)
316 4eun_A Thermoresistant glucoki 81.2 0.63 2.1E-05 40.0 2.0 25 1-32 37-61 (200)
317 2bdt_A BH3686; alpha-beta prot 81.2 0.62 2.1E-05 39.5 2.0 15 1-15 10-24 (189)
318 2dr3_A UPF0273 protein PH0284; 80.9 0.89 3.1E-05 40.3 3.1 32 1-34 31-62 (247)
319 1y63_A LMAJ004144AAA protein; 80.9 0.61 2.1E-05 39.5 1.8 15 1-15 18-32 (184)
320 2ck3_A ATP synthase subunit al 80.9 1.7 5.7E-05 42.9 5.1 43 2-46 171-222 (510)
321 1tev_A UMP-CMP kinase; ploop, 80.9 0.61 2.1E-05 39.6 1.9 15 1-15 11-25 (196)
322 1kgd_A CASK, peripheral plasma 80.8 0.62 2.1E-05 39.3 1.9 15 1-15 13-27 (180)
323 2px0_A Flagellar biosynthesis 80.7 3.2 0.00011 38.1 6.7 77 1-82 113-191 (296)
324 2plr_A DTMP kinase, probable t 80.5 0.64 2.2E-05 40.2 1.9 15 1-15 12-26 (213)
325 1cp2_A CP2, nitrogenase iron p 80.4 1.1 3.9E-05 40.3 3.6 31 2-34 10-40 (269)
326 2vli_A Antibiotic resistance p 80.3 0.47 1.6E-05 40.0 0.9 15 1-15 13-27 (183)
327 3bgw_A DNAB-like replicative h 80.3 4.4 0.00015 39.6 8.0 42 1-46 205-246 (444)
328 3a4m_A L-seryl-tRNA(SEC) kinas 80.2 0.65 2.2E-05 41.9 1.9 15 1-15 12-26 (260)
329 3cmw_A Protein RECA, recombina 80.1 1.9 6.4E-05 49.4 5.8 78 1-85 391-473 (1706)
330 2c95_A Adenylate kinase 1; tra 80.0 0.68 2.3E-05 39.4 1.9 15 1-15 17-31 (196)
331 2cdn_A Adenylate kinase; phosp 79.9 0.69 2.3E-05 39.7 1.9 15 1-15 28-42 (201)
332 1q57_A DNA primase/helicase; d 79.8 7.2 0.00024 38.8 9.6 44 1-48 250-294 (503)
333 2bwj_A Adenylate kinase 5; pho 79.6 0.71 2.4E-05 39.4 1.9 15 1-15 20-34 (199)
334 3zvl_A Bifunctional polynucleo 79.5 2.8 9.6E-05 40.7 6.3 15 1-15 266-280 (416)
335 3zq6_A Putative arsenical pump 79.3 1.4 5E-05 41.1 4.0 35 2-38 23-57 (324)
336 2z0h_A DTMP kinase, thymidylat 79.3 1.7 5.9E-05 36.8 4.2 15 1-15 8-22 (197)
337 1aky_A Adenylate kinase; ATP:A 79.1 0.75 2.6E-05 40.2 1.9 15 1-15 12-26 (220)
338 1fx0_A ATP synthase alpha chai 79.1 1.1 3.9E-05 44.1 3.2 75 2-82 172-264 (507)
339 1nn5_A Similar to deoxythymidy 78.9 1 3.5E-05 39.0 2.7 15 1-15 17-31 (215)
340 4akg_A Glutathione S-transfera 78.9 15 0.0005 44.5 12.9 132 1-143 1275-1431(2695)
341 2pbr_A DTMP kinase, thymidylat 78.7 0.78 2.7E-05 38.9 1.8 15 1-15 8-22 (195)
342 1tf7_A KAIC; homohexamer, hexa 78.7 1.7 5.9E-05 43.6 4.6 31 1-33 289-319 (525)
343 1ye8_A Protein THEP1, hypothet 78.6 0.87 3E-05 38.4 2.0 64 70-135 96-168 (178)
344 1gvn_B Zeta; postsegregational 78.6 0.7 2.4E-05 42.4 1.5 15 1-15 41-55 (287)
345 3k9g_A PF-32 protein; ssgcid, 78.5 1.3 4.5E-05 39.9 3.4 34 2-38 37-70 (267)
346 1zd8_A GTP:AMP phosphotransfer 78.5 0.8 2.7E-05 40.2 1.9 15 1-15 15-29 (227)
347 3iqw_A Tail-anchored protein t 78.4 1.5 5.1E-05 41.1 3.8 33 2-36 25-57 (334)
348 2if2_A Dephospho-COA kinase; a 78.3 0.82 2.8E-05 39.3 1.9 15 1-15 9-23 (204)
349 1g3q_A MIND ATPase, cell divis 78.3 1.4 4.9E-05 38.7 3.5 30 2-33 12-41 (237)
350 3ea0_A ATPase, para family; al 78.2 1.6 5.3E-05 38.7 3.8 31 2-34 14-45 (245)
351 3tau_A Guanylate kinase, GMP k 78.2 0.98 3.3E-05 39.1 2.3 15 1-15 16-30 (208)
352 3fb4_A Adenylate kinase; psych 78.2 0.81 2.8E-05 39.7 1.8 15 1-15 8-22 (216)
353 4gp7_A Metallophosphoesterase; 78.1 0.84 2.9E-05 38.1 1.8 22 61-82 89-110 (171)
354 3a00_A Guanylate kinase, GMP k 78.1 1 3.5E-05 38.1 2.4 15 1-15 9-23 (186)
355 2xj4_A MIPZ; replication, cell 78.1 1.4 4.8E-05 40.3 3.5 37 2-40 14-51 (286)
356 3tr0_A Guanylate kinase, GMP k 77.9 0.91 3.1E-05 39.0 2.0 15 1-15 15-29 (205)
357 1zak_A Adenylate kinase; ATP:A 77.8 0.85 2.9E-05 39.9 1.8 15 1-15 13-27 (222)
358 3q9l_A Septum site-determining 77.7 1.5 5.2E-05 39.2 3.6 34 2-37 12-46 (260)
359 3end_A Light-independent proto 77.6 1.4 4.8E-05 40.7 3.4 32 2-35 50-81 (307)
360 1qf9_A UMP/CMP kinase, protein 77.6 0.88 3E-05 38.5 1.8 15 1-15 14-28 (194)
361 1jjv_A Dephospho-COA kinase; P 77.6 0.95 3.3E-05 39.0 2.0 15 1-15 10-24 (206)
362 3dl0_A Adenylate kinase; phosp 77.5 0.87 3E-05 39.6 1.8 15 1-15 8-22 (216)
363 2j41_A Guanylate kinase; GMP, 77.5 0.88 3E-05 39.1 1.8 15 1-15 14-28 (207)
364 2wwf_A Thymidilate kinase, put 77.5 0.88 3E-05 39.3 1.8 15 1-15 18-32 (212)
365 1ukz_A Uridylate kinase; trans 77.3 0.9 3.1E-05 39.0 1.8 15 1-15 23-37 (203)
366 3gqb_B V-type ATP synthase bet 77.3 1.9 6.7E-05 41.9 4.2 45 2-46 156-210 (464)
367 2afh_E Nitrogenase iron protei 77.2 1.3 4.4E-05 40.5 3.0 31 2-34 11-41 (289)
368 2bbw_A Adenylate kinase 4, AK4 77.1 0.97 3.3E-05 40.3 2.0 15 1-15 35-49 (246)
369 3fkq_A NTRC-like two-domain pr 77.1 1.2 4.2E-05 42.5 2.9 34 2-37 153-186 (373)
370 3c8u_A Fructokinase; YP_612366 76.9 0.91 3.1E-05 39.3 1.7 15 1-15 30-44 (208)
371 3oaa_A ATP synthase subunit al 76.9 3.8 0.00013 40.3 6.2 75 2-82 171-263 (513)
372 1e4v_A Adenylate kinase; trans 76.8 0.94 3.2E-05 39.3 1.8 15 1-15 8-22 (214)
373 2ffh_A Protein (FFH); SRP54, s 76.6 3.1 0.00011 40.3 5.6 29 1-31 106-134 (425)
374 2q6t_A DNAB replication FORK h 76.6 10 0.00036 36.9 9.5 42 1-46 208-250 (444)
375 3be4_A Adenylate kinase; malar 76.5 1 3.4E-05 39.3 1.9 15 1-15 13-27 (217)
376 1cke_A CK, MSSA, protein (cyti 76.4 0.99 3.4E-05 39.5 1.9 15 1-15 13-27 (227)
377 2v54_A DTMP kinase, thymidylat 76.4 1 3.4E-05 38.6 1.9 15 1-15 12-26 (204)
378 2pez_A Bifunctional 3'-phospho 76.4 1 3.5E-05 37.8 1.9 15 1-15 13-27 (179)
379 2c61_A A-type ATP synthase non 76.3 1.6 5.5E-05 42.7 3.4 45 2-46 161-208 (469)
380 3mfy_A V-type ATP synthase alp 76.3 6.3 0.00021 39.3 7.5 38 2-43 236-274 (588)
381 1wcv_1 SOJ, segregation protei 76.1 1.1 3.8E-05 40.1 2.2 31 2-34 16-46 (257)
382 1j8m_F SRP54, signal recogniti 76.1 3.5 0.00012 37.9 5.5 82 1-84 106-191 (297)
383 2r6a_A DNAB helicase, replicat 75.9 8.7 0.0003 37.6 8.8 41 1-45 211-252 (454)
384 2xb4_A Adenylate kinase; ATP-b 75.8 1.1 3.6E-05 39.3 1.9 15 1-15 8-22 (223)
385 1hyq_A MIND, cell division inh 75.7 1.8 6.1E-05 38.9 3.4 30 2-33 12-41 (263)
386 2ph1_A Nucleotide-binding prot 75.7 1.3 4.5E-05 39.8 2.5 31 2-34 28-58 (262)
387 2qt1_A Nicotinamide riboside k 75.7 1.1 3.9E-05 38.5 2.0 15 1-15 29-43 (207)
388 1xjc_A MOBB protein homolog; s 75.6 1.6 5.3E-05 36.4 2.7 15 1-15 12-26 (169)
389 1cr0_A DNA primase/helicase; R 75.6 2.7 9.3E-05 38.5 4.7 30 1-32 43-73 (296)
390 2oze_A ORF delta'; para, walke 75.4 1.9 6.3E-05 39.6 3.5 32 2-35 46-77 (298)
391 1ak2_A Adenylate kinase isoenz 74.9 1.1 3.9E-05 39.4 1.9 15 1-15 24-38 (233)
392 1m7g_A Adenylylsulfate kinase; 74.9 1.1 3.9E-05 38.7 1.8 15 1-15 33-47 (211)
393 3cmw_A Protein RECA, recombina 74.8 3.3 0.00011 47.4 5.8 75 1-82 1439-1518(1706)
394 2j9r_A Thymidine kinase; TK1, 74.8 2.6 8.9E-05 36.5 4.0 100 3-113 38-138 (214)
395 2fz4_A DNA repair protein RAD2 74.8 5.8 0.0002 34.9 6.5 29 70-98 189-217 (237)
396 1yrb_A ATP(GTP)binding protein 74.7 1.2 4E-05 40.0 1.9 15 1-15 22-36 (262)
397 3io3_A DEHA2D07832P; chaperone 74.6 2.1 7E-05 40.4 3.6 32 2-35 27-60 (348)
398 1nlf_A Regulatory protein REPA 74.6 1.9 6.5E-05 39.2 3.3 15 1-15 38-52 (279)
399 3ug7_A Arsenical pump-driving 74.6 1.9 6.3E-05 40.8 3.3 30 2-33 35-64 (349)
400 3asz_A Uridine kinase; cytidin 74.5 1.2 4.3E-05 38.3 2.0 15 1-15 14-28 (211)
401 2p5t_B PEZT; postsegregational 74.3 0.87 3E-05 40.8 0.9 15 1-15 40-54 (253)
402 1uf9_A TT1252 protein; P-loop, 74.3 1.2 4.2E-05 38.0 1.9 15 1-15 16-30 (203)
403 1ny5_A Transcriptional regulat 74.2 14 0.00047 35.3 9.5 102 2-112 169-281 (387)
404 1ls1_A Signal recognition part 74.0 4.2 0.00014 37.3 5.5 29 1-31 106-134 (295)
405 2grj_A Dephospho-COA kinase; T 73.7 1.3 4.4E-05 37.8 1.8 15 1-15 20-34 (192)
406 3tlx_A Adenylate kinase 2; str 73.7 1.3 4.4E-05 39.4 1.9 15 1-15 37-51 (243)
407 3b5x_A Lipid A export ATP-bind 73.7 13 0.00045 37.7 9.7 53 66-118 491-544 (582)
408 3nwj_A ATSK2; P loop, shikimat 73.6 1.3 4.4E-05 39.7 1.8 15 1-15 56-70 (250)
409 4edh_A DTMP kinase, thymidylat 73.4 3.4 0.00012 35.8 4.5 15 1-15 14-28 (213)
410 4eaq_A DTMP kinase, thymidylat 73.3 2.2 7.6E-05 37.5 3.3 15 1-15 34-48 (229)
411 1ltq_A Polynucleotide kinase; 73.3 1.3 4.4E-05 40.8 1.9 15 1-15 10-24 (301)
412 1lvg_A Guanylate kinase, GMP k 73.1 1.5 5E-05 37.6 2.0 15 1-15 12-26 (198)
413 3pg5_A Uncharacterized protein 72.8 2 6.8E-05 40.8 3.1 34 2-37 11-44 (361)
414 1znw_A Guanylate kinase, GMP k 72.7 1.5 5.1E-05 37.8 2.0 15 1-15 28-42 (207)
415 3llm_A ATP-dependent RNA helic 72.6 4.1 0.00014 35.8 5.0 53 58-111 162-216 (235)
416 2ehv_A Hypothetical protein PH 72.6 1.5 5.1E-05 38.9 2.0 31 1-32 38-68 (251)
417 2woo_A ATPase GET3; tail-ancho 72.5 2.5 8.6E-05 39.5 3.7 31 2-34 28-58 (329)
418 4e22_A Cytidylate kinase; P-lo 72.2 1.5 5.3E-05 39.2 2.0 15 1-15 35-49 (252)
419 1gtv_A TMK, thymidylate kinase 72.0 0.81 2.8E-05 39.6 0.1 14 2-15 9-22 (214)
420 2zts_A Putative uncharacterize 72.0 1.6 5.5E-05 38.6 2.1 33 1-34 38-70 (251)
421 1rz3_A Hypothetical protein rb 71.9 1.6 5.5E-05 37.4 2.0 15 1-15 30-44 (201)
422 1htw_A HI0065; nucleotide-bind 71.8 1.7 5.7E-05 35.8 2.0 15 1-15 41-55 (158)
423 1uj2_A Uridine-cytidine kinase 71.4 1.5 5.2E-05 39.1 1.8 15 1-15 30-44 (252)
424 1vht_A Dephospho-COA kinase; s 71.2 1.6 5.5E-05 37.9 1.9 15 1-15 12-26 (218)
425 3ney_A 55 kDa erythrocyte memb 70.9 1.7 5.8E-05 37.2 1.9 15 1-15 27-41 (197)
426 3e70_C DPA, signal recognition 70.9 8.4 0.00029 35.8 6.8 46 1-49 137-184 (328)
427 4hlc_A DTMP kinase, thymidylat 70.8 2 7E-05 37.0 2.4 22 1-24 10-31 (205)
428 1tue_A Replication protein E1; 70.7 1.4 4.7E-05 37.9 1.2 15 1-15 66-80 (212)
429 1z6g_A Guanylate kinase; struc 70.7 1.7 6E-05 37.8 2.0 15 1-15 31-45 (218)
430 2woj_A ATPase GET3; tail-ancho 70.7 3.6 0.00012 38.9 4.3 35 2-38 27-63 (354)
431 3ake_A Cytidylate kinase; CMP 70.6 1.7 5.7E-05 37.3 1.8 15 1-15 10-24 (208)
432 2jeo_A Uridine-cytidine kinase 70.4 1.8 6E-05 38.5 2.0 15 1-15 33-47 (245)
433 1s96_A Guanylate kinase, GMP k 70.1 1.9 6.4E-05 37.7 2.0 15 1-15 24-38 (219)
434 3r20_A Cytidylate kinase; stru 69.8 1.8 6.2E-05 38.1 1.9 15 1-15 17-31 (233)
435 3hws_A ATP-dependent CLP prote 69.3 1.6 5.6E-05 41.4 1.6 15 1-15 59-73 (363)
436 2i3b_A HCR-ntpase, human cance 68.8 2.1 7.3E-05 36.3 2.1 15 1-15 9-23 (189)
437 3sr0_A Adenylate kinase; phosp 68.8 1.9 6.6E-05 37.2 1.8 15 1-15 8-22 (206)
438 3aez_A Pantothenate kinase; tr 68.7 2 6.9E-05 39.8 2.0 15 1-15 98-112 (312)
439 2f6r_A COA synthase, bifunctio 68.2 2.1 7.2E-05 39.0 2.0 15 1-15 83-97 (281)
440 3a8t_A Adenylate isopentenyltr 68.2 1.8 6.3E-05 40.4 1.6 15 1-15 48-62 (339)
441 1np6_A Molybdopterin-guanine d 67.8 2.2 7.4E-05 35.7 1.9 15 1-15 14-28 (174)
442 1byi_A Dethiobiotin synthase; 67.6 2.2 7.6E-05 37.1 2.0 14 2-15 11-24 (224)
443 4tmk_A Protein (thymidylate ki 67.6 5.1 0.00017 34.7 4.3 44 1-46 11-55 (213)
444 3crm_A TRNA delta(2)-isopenten 67.4 2.1 7.3E-05 39.7 1.9 15 1-15 13-27 (323)
445 1odf_A YGR205W, hypothetical 3 67.2 2.1 7.3E-05 39.2 1.9 15 1-15 39-53 (290)
446 2yhs_A FTSY, cell division pro 67.2 9.2 0.00032 37.7 6.4 33 1-36 301-333 (503)
447 3ez2_A Plasmid partition prote 67.0 3.8 0.00013 39.4 3.7 32 2-35 118-155 (398)
448 2qi9_C Vitamin B12 import ATP- 67.0 3.2 0.00011 37.0 3.0 25 1-29 34-58 (249)
449 3lv8_A DTMP kinase, thymidylat 66.7 5 0.00017 35.4 4.1 27 1-29 35-62 (236)
450 2qmh_A HPR kinase/phosphorylas 66.6 2.3 7.8E-05 36.3 1.8 16 1-16 42-57 (205)
451 1c9k_A COBU, adenosylcobinamid 66.6 5.1 0.00017 33.6 3.9 28 2-35 8-35 (180)
452 3igf_A ALL4481 protein; two-do 66.6 2.1 7.1E-05 40.8 1.7 33 2-37 11-43 (374)
453 3v9p_A DTMP kinase, thymidylat 66.6 3.6 0.00012 36.1 3.1 15 1-15 33-47 (227)
454 2pcj_A ABC transporter, lipopr 66.4 2.4 8.1E-05 37.1 1.9 15 1-15 38-52 (224)
455 2eyu_A Twitching motility prot 66.3 2.6 9E-05 37.9 2.2 27 1-29 33-59 (261)
456 3e1s_A Exodeoxyribonuclease V, 65.9 6.4 0.00022 39.9 5.3 33 75-110 281-313 (574)
457 2xxa_A Signal recognition part 65.6 12 0.00041 36.4 6.9 30 1-32 108-138 (433)
458 3d3q_A TRNA delta(2)-isopenten 65.6 2.4 8.1E-05 39.7 1.8 15 1-15 15-29 (340)
459 2onk_A Molybdate/tungstate ABC 65.4 2.6 9E-05 37.3 2.0 15 1-15 32-46 (240)
460 3tif_A Uncharacterized ABC tra 65.4 2.5 8.5E-05 37.3 1.9 26 1-29 39-64 (235)
461 3umf_A Adenylate kinase; rossm 65.3 2.5 8.7E-05 36.7 1.8 15 1-15 37-51 (217)
462 2wji_A Ferrous iron transport 65.1 3.3 0.00011 33.9 2.5 16 1-16 11-26 (165)
463 2ocp_A DGK, deoxyguanosine kin 64.7 2.6 8.9E-05 37.3 1.9 15 1-15 10-24 (241)
464 3b85_A Phosphate starvation-in 64.6 2.3 7.7E-05 36.8 1.4 41 70-114 119-159 (208)
465 3fwy_A Light-independent proto 64.6 4.3 0.00015 37.6 3.4 29 2-32 57-85 (314)
466 1rj9_A FTSY, signal recognitio 64.3 3.5 0.00012 38.0 2.7 27 1-30 110-136 (304)
467 1g41_A Heat shock protein HSLU 64.3 2.4 8.1E-05 41.4 1.6 15 1-15 58-72 (444)
468 2hf9_A Probable hydrogenase ni 64.3 2.5 8.7E-05 36.7 1.7 14 2-15 47-60 (226)
469 2ga8_A Hypothetical 39.9 kDa p 64.1 2.7 9.2E-05 39.6 1.9 15 1-15 32-46 (359)
470 2zej_A Dardarin, leucine-rich 64.0 2.8 9.4E-05 35.1 1.8 14 2-15 11-24 (184)
471 3tqf_A HPR(Ser) kinase; transf 63.9 2.9 9.9E-05 34.8 1.8 15 1-15 24-38 (181)
472 3gmt_A Adenylate kinase; ssgci 63.7 2.8 9.7E-05 36.7 1.9 15 1-15 16-30 (230)
473 3tqc_A Pantothenate kinase; bi 63.7 2.9 9.9E-05 38.8 2.0 15 1-15 100-114 (321)
474 1sgw_A Putative ABC transporte 63.7 2.9 9.9E-05 36.3 1.9 15 1-15 43-57 (214)
475 1xx6_A Thymidine kinase; NESG, 63.6 1.7 5.9E-05 36.9 0.5 43 68-113 76-118 (191)
476 1oix_A RAS-related protein RAB 63.3 2.9 0.0001 35.3 1.9 16 1-16 37-52 (191)
477 3vr4_A V-type sodium ATPase ca 63.3 12 0.00039 37.6 6.3 29 2-34 241-269 (600)
478 1b0u_A Histidine permease; ABC 63.2 2.9 0.0001 37.6 1.9 15 1-15 40-54 (262)
479 3lnc_A Guanylate kinase, GMP k 63.2 1.9 6.7E-05 37.8 0.7 15 1-15 35-50 (231)
480 1zu4_A FTSY; GTPase, signal re 62.9 3.7 0.00012 38.2 2.6 29 1-31 113-141 (320)
481 3gfo_A Cobalt import ATP-bindi 62.8 3 0.0001 37.8 1.9 15 1-15 42-56 (275)
482 4g1u_C Hemin import ATP-bindin 62.7 4.8 0.00016 36.2 3.3 27 1-30 45-71 (266)
483 3b9q_A Chloroplast SRP recepto 62.5 3.2 0.00011 38.3 2.0 28 1-31 108-135 (302)
484 1ihu_A Arsenical pump-driving 62.4 4.7 0.00016 41.1 3.6 29 2-32 17-45 (589)
485 3dzd_A Transcriptional regulat 62.4 12 0.00041 35.5 6.1 24 76-99 225-248 (368)
486 2f1r_A Molybdopterin-guanine d 62.3 2 6.8E-05 35.8 0.6 14 2-15 11-24 (171)
487 1g8f_A Sulfate adenylyltransfe 62.3 2.9 0.0001 41.6 1.9 15 1-15 403-417 (511)
488 2cbz_A Multidrug resistance-as 62.2 3.1 0.00011 36.8 1.9 55 63-117 135-193 (237)
489 2olj_A Amino acid ABC transpor 62.1 3.1 0.00011 37.4 1.9 15 1-15 58-72 (263)
490 1ji0_A ABC transporter; ATP bi 62.1 3.1 0.00011 36.8 1.9 15 1-15 40-54 (240)
491 1sq5_A Pantothenate kinase; P- 62.1 3.2 0.00011 38.3 2.0 15 1-15 88-102 (308)
492 1g6h_A High-affinity branched- 61.8 3.1 0.00011 37.2 1.9 15 1-15 41-55 (257)
493 3exa_A TRNA delta(2)-isopenten 61.8 3.2 0.00011 38.3 1.9 15 1-15 11-25 (322)
494 3ld9_A DTMP kinase, thymidylat 61.7 5.6 0.00019 34.7 3.4 15 1-15 29-43 (223)
495 3foz_A TRNA delta(2)-isopenten 61.6 3.2 0.00011 38.2 1.9 15 1-15 18-32 (316)
496 2d2e_A SUFC protein; ABC-ATPas 61.5 3.3 0.00011 36.9 2.0 15 1-15 37-51 (250)
497 2pze_A Cystic fibrosis transme 61.4 3.3 0.00011 36.3 1.9 57 62-118 137-195 (229)
498 2ce2_X GTPase HRAS; signaling 61.3 3.2 0.00011 33.5 1.7 15 2-16 12-26 (166)
499 1vpl_A ABC transporter, ATP-bi 61.3 3.3 0.00011 37.1 1.9 15 1-15 49-63 (256)
500 4akg_A Glutathione S-transfera 60.9 23 0.00078 42.8 9.2 37 1-42 653-689 (2695)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-39 Score=334.02 Aligned_cols=288 Identities=19% Similarity=0.303 Sum_probs=224.7
Q ss_pred CCCCcHHHHHHHHhc--CcccccCCCceEEEEeCCCC--CHHHHHHHHHHHcCCCCC------CChhcHHHHHHHHHHHc
Q 046115 1 MGGIGKTTLAQFAYN--NGDVERNFEKRTWVCVSEPF--DEFRIARAIIESLTPGSA------KDLVEFQSLMQHIEECV 70 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~l~~~l 70 (505)
|||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+++.... .+..+.+.....+.+.+
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 799999999999997 55888999999999999875 789999999999975421 12234566788899999
Q ss_pred CCc-eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhC-CcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 71 AGK-KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMG-STHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 71 ~~~-r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~-~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
+++ |+||||||||+.+...| +. .+||+||||||++.++..++ ....+++++|+.+||++||.+.++...
T Consensus 240 ~~~kr~LlVLDdv~~~~~~~~-------~~-~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~- 310 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETIRW-------AQ-ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP- 310 (549)
T ss_dssp TTSTTEEEEEEEECCHHHHHH-------HH-HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-
T ss_pred cCCCcEEEEEECCCCchhhcc-------cc-cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC-
Confidence 996 99999999998653212 11 27899999999998887665 346799999999999999999986543
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhhhcccCchhhHhhccccCChhhhhhhh-
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFS- 227 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~L~~~~~~~ll- 227 (505)
..+...+++.+|+++|+|+||||+++|+.++.+ .. .|...+....... ....+..++.+||+.|+++.+.||+
T Consensus 311 --~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~ 384 (549)
T 2a5y_B 311 --VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEV 384 (549)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred --CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhc
Confidence 245778899999999999999999999999766 32 3333333322211 2456888899999999999999998
Q ss_pred ----------hhccCCCCCCCChHHHHHHHHHc--CCCCCCC-CCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeee
Q 046115 228 ----------YCAVFPKDYGIRKHKLIELWMAQ--GYLSEKG-AKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKM 294 (505)
Q Consensus 228 ----------~la~f~~~~~i~~~~l~~~w~~~--~~~~~~~-~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~ 294 (505)
+||+||+++.++ +..|+++ |++.... ....++.++ ++++|++++|++....+ ....|+|
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~m 456 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKI 456 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEEC
T ss_pred cchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEe
Confidence 999999998888 7789999 8887665 456677666 99999999999876543 2337999
Q ss_pred hHHHHHHHHHhhccceE
Q 046115 295 HDIVHDFAQYLCSNECL 311 (505)
Q Consensus 295 H~lv~~~~~~~~~~~~~ 311 (505)
|+++|+||++++.+++.
T Consensus 457 Hdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 457 DHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CHHHHHHHHTTSCTHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 99999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=1.5e-32 Score=287.52 Aligned_cols=257 Identities=20% Similarity=0.214 Sum_probs=195.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCc-eEEEEeCCCCCHHHHHHHHHHHcCC---C--CC-----CChhcHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEK-RTWVCVSEPFDEFRIARAIIESLTP---G--SA-----KDLVEFQSLMQHIEEC 69 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~l~~~l~~---~--~~-----~~~~~~~~~~~~l~~~ 69 (505)
|||+||||||++++++.+++.+|+. ++|+++++.++...++..++..+.. . .. ....+.+...+.++..
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 7999999999999986678889986 8899999999888877777664321 1 00 1123445556666665
Q ss_pred c---CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeCC------CCChhhHHHHHH
Q 046115 70 V---AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVN------VLSEMECWSVFQ 140 (505)
Q Consensus 70 l---~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l~------~l~~~ea~~Lf~ 140 (505)
+ .++|+||||||||+.+ .|+. ++ +||+||||||++.+...+.....+.++ +|+.+||++||.
T Consensus 238 L~~l~~KRvLLVLDDVwd~e--qLe~----f~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~ 308 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAK--AWNA----FN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHH--HHHH----HH---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCcChHH--HHHh----hC---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHH
Confidence 5 7899999999998843 3333 22 789999999999887544333345555 899999999998
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCC-CHHHHHHHHhhhhhhhhhcccCchhhHhhccccCC
Q 046115 141 SLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKN-TEKEWQNILENEIWELEAIEKGLLAPLLLSYNELP 219 (505)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~l~~s~~~L~ 219 (505)
... ... . .++..+ .|+|+||||+++|+.|+.+. ....|... ....+..++..||+.|+
T Consensus 309 ~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp 367 (1221)
T 1vt4_I 309 KYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLE 367 (1221)
T ss_dssp HHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSC
T ss_pred HHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCC
Confidence 874 211 1 122333 39999999999999998874 66778642 13568899999999999
Q ss_pred hhh-hhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHH
Q 046115 220 SKV-KRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIV 298 (505)
Q Consensus 220 ~~~-~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv 298 (505)
++. |.||+++|+||.++.++.+.+...|.+++ ++.+++++++|++++|++.... ..+|+||+++
T Consensus 368 ~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~-----~~rYrMHDLl 432 (1221)
T 1vt4_I 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIY 432 (1221)
T ss_dssp TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSS-----SSEEBCCCHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCC-----CCEEEehHHH
Confidence 999 99999999999999999999999997664 1357889999999999987311 1279999999
Q ss_pred HHHH
Q 046115 299 HDFA 302 (505)
Q Consensus 299 ~~~~ 302 (505)
++++
T Consensus 433 lELr 436 (1221)
T 1vt4_I 433 LELK 436 (1221)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.3e-31 Score=304.15 Aligned_cols=279 Identities=23% Similarity=0.355 Sum_probs=216.1
Q ss_pred CCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCCCCC--HHHHHHHHHHHcCCCC---CCChhcHHHHHHHHHHHcCCc
Q 046115 1 MGGIGKTTLAQFAYNNGDV-ERNF-EKRTWVCVSEPFD--EFRIARAIIESLTPGS---AKDLVEFQSLMQHIEECVAGK 73 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~ 73 (505)
|||+||||||++++++.+. ..+| ++++|+++++... ....+..++..+.... .....+.++..+.++..+.++
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999995433 4555 5677999988543 3445666777776432 234567788888999999877
Q ss_pred --eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHH-hCCcceEeCCC-CChhhHHHHHHHhhhCCCCC
Q 046115 74 --KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARI-MGSTHVISVNV-LSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 74 --r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~-~~~~~~~~l~~-l~~~ea~~Lf~~~~~~~~~~ 149 (505)
|+||||||||+.. .+....+||+||||||++.+... .+....+.+.. |+.+||++||...+...
T Consensus 235 ~~~~LlvlDd~~~~~---------~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--- 302 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPW---------VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--- 302 (1249)
T ss_dssp SCSCEEEEESCCCHH---------HHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---
T ss_pred CCCEEEEEecCCCHH---------HHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---
Confidence 9999999998743 23334789999999999988743 34567889986 99999999999887432
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhh----hh----cccCchhhHhhccccCChh
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWEL----EA----IEKGLLAPLLLSYNELPSK 221 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l----~~----~~~~~~~~l~~s~~~L~~~ 221 (505)
.+..++++.+|+++|+|+||||+++|++|+... ..|...++...... .. ....+..++.+||+.|+++
T Consensus 303 --~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~ 378 (1249)
T 3sfz_A 303 --KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378 (1249)
T ss_dssp --STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT
T ss_pred --hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH
Confidence 223345689999999999999999999998764 24655555432221 00 1135888999999999999
Q ss_pred hhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHHHHH
Q 046115 222 VKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVHDF 301 (505)
Q Consensus 222 ~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv~~~ 301 (505)
.|.||+++|+||+++.++.+.++..|.++ ++.+++++++|++++|++.... ++..+|+||+++|+|
T Consensus 379 ~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDF 444 (1249)
T ss_dssp THHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHH
T ss_pred HHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHH
Confidence 99999999999999999999999999432 5678999999999999985442 333479999999999
Q ss_pred HHHhhccc
Q 046115 302 AQYLCSNE 309 (505)
Q Consensus 302 ~~~~~~~~ 309 (505)
+++++.++
T Consensus 445 ~~~~~~~~ 452 (1249)
T 3sfz_A 445 LTEKNRSQ 452 (1249)
T ss_dssp HHHHTGGG
T ss_pred HHhhhhHH
Confidence 99997765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=264.70 Aligned_cols=275 Identities=23% Similarity=0.337 Sum_probs=202.5
Q ss_pred CCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCCCCCHHHHH---HHHHHHcCCC---CCCChhcHHHHHHHHHHHcCC
Q 046115 1 MGGIGKTTLAQFAYNNGDV-ERNF-EKRTWVCVSEPFDEFRIA---RAIIESLTPG---SAKDLVEFQSLMQHIEECVAG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~---~~l~~~l~~~---~~~~~~~~~~~~~~l~~~l~~ 72 (505)
|||+||||||.+++++..+ ..+| ++++|++++.. +...++ ..++..++.. ......+.+.....+...+.+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999986444 6789 57899998875 333333 3334455421 123345666777778777755
Q ss_pred --ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHHHhCCcceEeC---CCCChhhHHHHHHHhhhCCC
Q 046115 73 --KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISV---NVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 73 --~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~~~~~~~~l---~~l~~~ea~~Lf~~~~~~~~ 147 (505)
+++||||||+|+.. .+....++++||||||++.+...+.. ..+++ ++|+.+||++||...++..
T Consensus 234 ~~~~~LLVLDdv~~~~---------~l~~l~~~~~ilvTsR~~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~- 302 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSW---------VLKAFDSQCQILLTTRDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK- 302 (591)
T ss_dssp TCTTCEEEEEEECCHH---------HHHTTCSSCEEEEEESCGGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-
T ss_pred CCCCeEEEEeCCCCHH---------HHHHhcCCCeEEEECCCcHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-
Confidence 78999999997632 12234678999999999887654332 23444 5899999999999887531
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhhhhh--------hcccCchhhHhhccccCC
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELE--------AIEKGLLAPLLLSYNELP 219 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~l~--------~~~~~~~~~l~~s~~~L~ 219 (505)
.....+.+.+|++.|+|+|+||+++|++++.... .|...++....... .....+..++..||+.|+
T Consensus 303 ----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~ 376 (591)
T 1z6t_A 303 ----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376 (591)
T ss_dssp ----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC
T ss_pred ----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC
Confidence 1222456889999999999999999999987642 56666554332210 112367889999999999
Q ss_pred hhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccccCCCCCeeEeeehHHHH
Q 046115 220 SKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNKYDDGEIYKCKMHDIVH 299 (505)
Q Consensus 220 ~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~~~~H~lv~ 299 (505)
++.|.||+++|+||.+..++.+.+...|... .+.+.+++++|++++|+..... +...+|+||++++
T Consensus 377 ~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~ 442 (591)
T 1z6t_A 377 EDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQV 442 (591)
T ss_dssp TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHH
T ss_pred HHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHH
Confidence 9999999999999999999999888888432 3457889999999999985432 2334799999999
Q ss_pred HHHHHhhc
Q 046115 300 DFAQYLCS 307 (505)
Q Consensus 300 ~~~~~~~~ 307 (505)
+|+++...
T Consensus 443 ~~~~~~~~ 450 (591)
T 1z6t_A 443 DFLTEKNC 450 (591)
T ss_dssp HHHHHHTG
T ss_pred HHHHhhhh
Confidence 99998844
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=1.8e-14 Score=138.45 Aligned_cols=128 Identities=28% Similarity=0.369 Sum_probs=102.4
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
++++|+.|++.+|.++. +|..+..+++|+.|+++ ++.+..+|+.++.+++|++|++++|...+.+|..+
T Consensus 181 ~l~~L~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~-------~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRS----LPASIANLQNLKSLKIR-------NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp ESTTCCEEEEEEECCCC----CCGGGGGCTTCCEEEEE-------SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred cCCCCCEEECcCCCcCc----chHhhcCCCCCCEEEcc-------CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 47777777777777652 56667788888888887 66667777778888888888888888777888888
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
+.+++|+.|++++|..+..+|..+..+++|++|++++|...+.+|..++++++|+.+.+
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 88888888888888878888888888888888888888888888888888887776643
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=4.3e-14 Score=135.82 Aligned_cols=152 Identities=26% Similarity=0.354 Sum_probs=127.6
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhh---------cCcccceEEecccccCCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFE---------KLTCLRALELQVRESWPRN 399 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~ 399 (505)
..+..+.+..+....+|.. +..+++|++|++++|...+. +|..+. .+++|++|+++ +
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~n~~~~~---~p~~~~~~~~~~~~~~l~~L~~L~L~-------~ 192 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTE---LPEPLASTDASGEHQGLVNLQSLRLE-------W 192 (328)
T ss_dssp TTCSEEEEESCCCCCCCGG----GGGCTTCCEEEEEEETTCCC---CCSCSEEEC-CCCEEESTTCCEEEEE-------E
T ss_pred CCCCEEECCCCccccCcHH----HhcCcCCCEEECCCCCCccc---cChhHhhccchhhhccCCCCCEEECc-------C
Confidence 3678888888877755544 45899999999999765543 554444 48999999998 6
Q ss_pred ccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccc
Q 046115 400 NLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA 479 (505)
Q Consensus 400 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 479 (505)
+.+..+|..++.+++|++|++++|. +..+|..++.+++|+.|++++|.....+|..++.+++|++|++++|...+.+|.
T Consensus 193 n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 193 TGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 6677889889999999999999999 778888899999999999999998889999999999999999999988999999
Q ss_pred cccCCccCCccceeEe
Q 046115 480 GIGELIRLRRVREFVV 495 (505)
Q Consensus 480 ~i~~l~~L~~L~~~~~ 495 (505)
.+.++++|+.|++..+
T Consensus 272 ~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGC 287 (328)
T ss_dssp TGGGCTTCCEEECTTC
T ss_pred hhhcCCCCCEEeCCCC
Confidence 9999999988887643
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=9.1e-13 Score=116.71 Aligned_cols=144 Identities=13% Similarity=0.196 Sum_probs=118.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc-ccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK-EIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~p~~ 408 (505)
.+..+.+..+....++ . +..+++|++|++.+|.+.. ++ .+..+++|++|+++ ++.+. ..|..
T Consensus 45 ~L~~L~l~~n~i~~l~-~----l~~l~~L~~L~l~~n~~~~----~~-~l~~l~~L~~L~l~-------~n~l~~~~~~~ 107 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-G----IEYAHNIKDLTINNIHATN----YN-PISGLSNLERLRIM-------GKDVTSDKIPN 107 (197)
T ss_dssp TCCEEEEESSCCSCCT-T----GGGCTTCSEEEEESCCCSC----CG-GGTTCTTCCEEEEE-------CTTCBGGGSCC
T ss_pred CccEEeccCCCccChH-H----HhcCCCCCEEEccCCCCCc----ch-hhhcCCCCCEEEeE-------CCccCcccChh
Confidence 6778888888777655 2 4488999999999997653 33 48889999999999 45554 46788
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
++.+++|++|++++|......|..++.+++|+.|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLN 184 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCC
Confidence 9999999999999999555678889999999999999998678887 68999999999999998 44565 678888888
Q ss_pred cccee
Q 046115 489 RVREF 493 (505)
Q Consensus 489 ~L~~~ 493 (505)
.|++.
T Consensus 185 ~L~l~ 189 (197)
T 4ezg_A 185 QLYAF 189 (197)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 87754
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.44 E-value=5.2e-12 Score=122.52 Aligned_cols=265 Identities=11% Similarity=0.077 Sum_probs=154.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC------CHHHHHHHHHHHcCC-----------------CCCCChh
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF------DEFRIARAIIESLTP-----------------GSAKDLV 57 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~l~~~l~~-----------------~~~~~~~ 57 (505)
++|+|||+|++++++ +. ..+|+++.... +...++..+...+.. .......
T Consensus 39 ~~G~GKT~Ll~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 39 IRRVGKSSLLRAFLN--ER-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp CTTSSHHHHHHHHHH--HS-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred CCcCCHHHHHHHHHH--Hc-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 589999999999998 33 27788865432 555666666665542 0011123
Q ss_pred cHHHHHHHHHHHcCC-ceEEEEEeCCCCCCc------cChhHHHHhhcCCCCCcEEEEEeCchHHHHHh-----------
Q 046115 58 EFQSLMQHIEECVAG-KKFLLVLDDVWNEDY------YKWEPFYKCLKNSLHESKILITTRKETVARIM----------- 119 (505)
Q Consensus 58 ~~~~~~~~l~~~l~~-~r~LlvlDdv~~~~~------~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~----------- 119 (505)
+..+..+.+...... ++++||+||+++.+. ..+...+..+.+...+.++++|++........
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~ 191 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLY 191 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccc
Confidence 455555666555532 389999999977432 12222333332223568899998876532211
Q ss_pred CC-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHHHhhhhh
Q 046115 120 GS-THVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIW 198 (505)
Q Consensus 120 ~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~ 198 (505)
+. ...+.+.+|+.+|+.+++.......+. . ...+.+..+++.++|+|+++..++..+....+...+...+- .
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~---~ 264 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL---E 264 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH---H
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH---H
Confidence 11 247899999999999999765322111 1 12356789999999999999999876533222222211111 0
Q ss_pred hhhhcccCchhhHhhccccC---ChhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHc
Q 046115 199 ELEAIEKGLLAPLLLSYNEL---PSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASR 275 (505)
Q Consensus 199 ~l~~~~~~~~~~l~~s~~~L---~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 275 (505)
.. ...+...+..+ ++..+.++..+|+ . ..+...+......... + .....+..+++.|.+.
T Consensus 265 ~~-------~~~~~~~l~~l~~~~~~~~~~l~~la~--g--~~~~~~l~~~~~~~~~-----~-~~~~~~~~~l~~L~~~ 327 (350)
T 2qen_A 265 VA-------KGLIMGELEELRRRSPRYVDILRAIAL--G--YNRWSLIRDYLAVKGT-----K-IPEPRLYALLENLKKM 327 (350)
T ss_dssp HH-------HHHHHHHHHHHHHHCHHHHHHHHHHHT--T--CCSHHHHHHHHHHTTC-----C-CCHHHHHHHHHHHHHT
T ss_pred HH-------HHHHHHHHHHHHhCChhHHHHHHHHHh--C--CCCHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHhC
Confidence 00 00111111222 6788888888887 2 2344444433322110 1 1234577889999999
Q ss_pred ccccccccCCCCCeeEe-eehHHHHHHHH
Q 046115 276 SFFQDFNKYDDGEIYKC-KMHDIVHDFAQ 303 (505)
Q Consensus 276 ~Ll~~~~~~~~~~~~~~-~~H~lv~~~~~ 303 (505)
+++.... + .| ..|++++++.+
T Consensus 328 gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 328 NWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp TSEEEET----T---EEEESSHHHHHHHT
T ss_pred CCEEecC----C---EEEEecHHHHHHHc
Confidence 9997542 1 24 45789988864
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=4.9e-13 Score=127.64 Aligned_cols=128 Identities=14% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc-ccCccccCCCCcceeeccCCccccccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK-EIPTNIEKLLHLKYLNLKGQKKIEKLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~ 432 (505)
.+++|++|++++|.+++. +|..+..+++|++|+++ ++.+. .+|..++.+++|++|++++|...+.+|..
T Consensus 99 ~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls-------~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGA---IPDFLSQIKTLVTLDFS-------YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp GCTTCSEEEEEEECCEEE---CCGGGGGCTTCCEEECC-------SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCCCCCEEECcCCeeCCc---CCHHHhCCCCCCEEeCC-------CCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence 445555555555544322 34444555555555554 22222 44445555555555555555532345555
Q ss_pred hhcCC-CCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 433 LCELY-NLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 433 ~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
++.+. +|+.|++++|.....+|..+..++ |++|++++|...+..|..|..+++|+.|++
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 55554 555555555553334555555544 555555555544444555555666655554
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=5.6e-13 Score=121.03 Aligned_cols=130 Identities=25% Similarity=0.326 Sum_probs=76.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.+..+.+..+....++. ..+..+++|+.|++.+|.+... .+..+..+.+|++|+|+ ++.+..+|+.
T Consensus 41 ~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l~~i---~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~~ 107 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLGAL---PVGVFDSLTQLTVLDLG-------TNQLTVLPSAV 107 (229)
T ss_dssp TCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECC-------SSCCCCCCTTT
T ss_pred CCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCCCCCc---ChhhcccCCCcCEEECC-------CCcCCccChhH
Confidence 45555555555444322 2334566666666666665432 33345566666666666 4455555443
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCccc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 474 (505)
+..+++|++|++++|. +..+|..+..+++|+.|+|++|. +..+|. .+..+++|++|++.+|...
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 4566666666666666 55666666666666666666665 555553 3566666666666666543
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=4.9e-12 Score=125.67 Aligned_cols=266 Identities=12% Similarity=0.046 Sum_probs=156.1
Q ss_pred CCCCcHHHHHHHHhcCcccccC-----CC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC--C
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-----FE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA--G 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-----f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~ 72 (505)
++|+|||+||+++++ ..... +. .++|+++....+...++..++.+++........+..+....+...+. +
T Consensus 60 ~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 137 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVEN 137 (412)
T ss_dssp CCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 589999999999998 44332 23 35688887778888999999999875433223344455555555553 6
Q ss_pred ceEEEEEeCCCCCC------ccChhHHHHhhcCC---C--CCcEEEEEeCchHHHHHh--------CC-cceEeCCCCCh
Q 046115 73 KKFLLVLDDVWNED------YYKWEPFYKCLKNS---L--HESKILITTRKETVARIM--------GS-THVISVNVLSE 132 (505)
Q Consensus 73 ~r~LlvlDdv~~~~------~~~~~~~~~~~~~~---~--~~~~iLiTtr~~~~~~~~--------~~-~~~~~l~~l~~ 132 (505)
++++||+||+++-. ...+..+...+... + ....+|+||+...+.... .. ...+.+++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 79999999997632 12233333333322 2 445588788765532111 11 22389999999
Q ss_pred hhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcC------CChHHHHHHHHHh-----ccC---CCHHHHHHHHhhhhh
Q 046115 133 MECWSVFQSLAISGKTIGKRENLEKIGREIVKKCK------GLPLAAKTIASLL-----RSK---NTEKEWQNILENEIW 198 (505)
Q Consensus 133 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal~~~~~~l-----~~~---~~~~~~~~~l~~~~~ 198 (505)
+++.++|......... .....++.+..+++.++ |.|..+..+.... ... -+...+...+...
T Consensus 218 ~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~-- 293 (412)
T 1w5s_A 218 RELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN-- 293 (412)
T ss_dssp HHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--
Confidence 9999999755321000 01122466888999999 9997655544321 111 1233333332211
Q ss_pred hhhhcccCc-hhhHhhccccCChhhhhhhhhhccCC--CCCCCChHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHHHH
Q 046115 199 ELEAIEKGL-LAPLLLSYNELPSKVKRCFSYCAVFP--KDYGIRKHKLIELWMAQG--YLSEKGAKEMEDIGEEYFNILA 273 (505)
Q Consensus 199 ~l~~~~~~~-~~~l~~s~~~L~~~~~~~ll~la~f~--~~~~i~~~~l~~~w~~~~--~~~~~~~~~~~~~~~~~l~~L~ 273 (505)
. ...+...+..|++.++.++..++.+. .+..++...+...+.... ... ........+..+++.|.
T Consensus 294 --------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~ 363 (412)
T 1w5s_A 294 --------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN--VKPRGYTQYHIYLKHLT 363 (412)
T ss_dssp --------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC--CCCCCHHHHHHHHHHHH
T ss_pred --------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHH
Confidence 1 23345577889999999998888753 223455544433221100 000 01112345678899999
Q ss_pred Hcccccccc
Q 046115 274 SRSFFQDFN 282 (505)
Q Consensus 274 ~~~Ll~~~~ 282 (505)
+.+++....
T Consensus 364 ~~gli~~~~ 372 (412)
T 1w5s_A 364 SLGLVDAKP 372 (412)
T ss_dssp HTTSEEEEC
T ss_pred hCCCEEeec
Confidence 999997654
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1e-12 Score=118.43 Aligned_cols=129 Identities=26% Similarity=0.387 Sum_probs=73.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.+..+.+..+....++. ..|..+++|+.|++++|.++.. .|..|..+.+|++|+|+ ++.+..+|..
T Consensus 33 ~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~~ 99 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISEL---APDAFQGLRSLNSLVLY-------GNKITELPKSL 99 (220)
T ss_dssp TCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSCCCEE---CTTTTTTCSSCCEEECC-------SSCCCCCCTTT
T ss_pred CCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCcCCCc---CHHHhhCCcCCCEEECC-------CCcCCccCHhH
Confidence 45555555555544432 2334566666666666665543 44556666666666666 4555555544
Q ss_pred ccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 473 (505)
+..+++|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|+ .+..+++|++|++++|+.
T Consensus 100 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 3556666666666666 4333 4455666666666666666 444443 356666666666666653
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=2.4e-12 Score=118.73 Aligned_cols=149 Identities=24% Similarity=0.310 Sum_probs=118.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-c
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~ 408 (505)
.+..+.+..+....++. ..+.++++|++|++++|.++.. .+..+..+.+|++|+|+ ++.+..+|+ .
T Consensus 36 ~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 102 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLA-------NNQLASLPLGV 102 (251)
T ss_dssp TCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECT-------TSCCCCCCTTT
T ss_pred CCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCcCCcc---CHhHhccCCcCCEEECC-------CCcccccChhH
Confidence 67777777776655443 3456899999999999988764 56667889999999998 666666664 4
Q ss_pred ccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
+..+++|++|++++|. ++.+|.. +..+++|+.|+|++|. +..+|+ .++.+++|++|++++|......|..+..+++
T Consensus 103 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 6889999999999998 7777765 5889999999999998 777776 5889999999999999855443446788888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 181 L~~L~l~ 187 (251)
T 3m19_A 181 LQTITLF 187 (251)
T ss_dssp CCEEECC
T ss_pred CCEEEee
Confidence 8877754
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=117.42 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCcccccc-ch
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKL-PE 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l-p~ 431 (505)
.+++|+.|++.+|.++.. .+..+..+.+|+.|+|+ ++.+..+|+ .+..+++|++|+|++|. +..+ |.
T Consensus 55 ~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 123 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDI---EEGAFEGASGVNEILLT-------SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGND 123 (220)
T ss_dssp GCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTT
T ss_pred cCCCCCEEECCCCcCCEE---CHHHhCCCCCCCEEECC-------CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHh
Confidence 455555555555554432 23334555555555555 333333333 24455555555555555 3322 34
Q ss_pred hhhcCCCCcEEecCCCcCcccc-chhccccccCceeecCCCc
Q 046115 432 TLCELYNLERLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 472 (505)
.+..+++|+.|+|++|. +..+ |..+..+++|++|++++|.
T Consensus 124 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred HcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 44555555555555555 3333 4445555555555555554
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=9.3e-13 Score=113.44 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=102.5
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
..++|+.|++.+|.++. ..+|..+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.....+|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLI-------NVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEE-------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCc-------CCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 34789999999988761 1256667888899999998 5556666 668889999999999998333477767
Q ss_pred hcCCCCcEEecCCCcCccccc--hhccccccCceeecCCCcccccccc----cccCCccCCccceeEecC
Q 046115 434 CELYNLERLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREFVVGG 497 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~ 497 (505)
..+++|+.|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+..
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 779999999999987 77776 678889999999999997 455665 678888999888876554
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=7.6e-13 Score=126.31 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=86.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc-ccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK-EIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~p~~ 408 (505)
.++.+.+..+... ...+..+..+++|++|++++|.+++. +|..+..+++|++|+++ ++.+. .+|..
T Consensus 102 ~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~-------~N~l~~~~p~~ 168 (313)
T 1ogq_A 102 QLHYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNALSGT---LPPSISSLPNLVGITFD-------GNRISGAIPDS 168 (313)
T ss_dssp TCSEEEEEEECCE---EECCGGGGGCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECC-------SSCCEEECCGG
T ss_pred CCCEEECcCCeeC---CcCCHHHhCCCCCCEEeCCCCccCCc---CChHHhcCCCCCeEECc-------CCcccCcCCHH
Confidence 4555555555443 11222334666667777766665432 55556666667777666 33333 56666
Q ss_pred ccCCC-CcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccC
Q 046115 409 IEKLL-HLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 409 ~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
++.++ +|++|++++|...+.+|..+..+. |+.|++++|......|..+..+++|++|++++|...+..| .+..+++|
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 246 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTC
T ss_pred HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCC
Confidence 66665 667777766664446666666665 6777776666444555556666667777776666433333 35556666
Q ss_pred Cccce
Q 046115 488 RRVRE 492 (505)
Q Consensus 488 ~~L~~ 492 (505)
+.|++
T Consensus 247 ~~L~L 251 (313)
T 1ogq_A 247 NGLDL 251 (313)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 65554
No 17
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=2.9e-11 Score=117.52 Aligned_cols=266 Identities=10% Similarity=0.068 Sum_probs=151.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC-----CCHHHHHHHHHHHcC-------------CCC-----CC---
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP-----FDEFRIARAIIESLT-------------PGS-----AK--- 54 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~l~~~l~-------------~~~-----~~--- 54 (505)
++|+|||+|++++++ +... ..+|+++... .+....+..+...+. ... ..
T Consensus 38 ~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (357)
T 2fna_A 38 LRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI 112 (357)
T ss_dssp STTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSE
T ss_pred CCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEE
Confidence 589999999999998 4332 3578887643 344444444433321 000 00
Q ss_pred -------ChhcHHHHHHHHHHHcCCceEEEEEeCCCCCCc---cChhHHHHhhcCCCCCcEEEEEeCchHHHHHh-----
Q 046115 55 -------DLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDY---YKWEPFYKCLKNSLHESKILITTRKETVARIM----- 119 (505)
Q Consensus 55 -------~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~---~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~~----- 119 (505)
......+..+.+.+... ++++||+||+++-+. ..+..++..+.+...+.++++|++........
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~ 191 (357)
T 2fna_A 113 KFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVED 191 (357)
T ss_dssp EEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTC
T ss_pred EeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccC
Confidence 12234455555554333 489999999977421 23333344333333467899999976532211
Q ss_pred -----C-C-cceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhccCCCHHHHHHH
Q 046115 120 -----G-S-THVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNI 192 (505)
Q Consensus 120 -----~-~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~ 192 (505)
. . ...+.+.+|+.+|+.+++.......+. ..+. ...+++.|+|+|+++..++..+........|...
T Consensus 192 ~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~ 265 (357)
T 2fna_A 192 PESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ 265 (357)
T ss_dssp TTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHH
Confidence 1 1 257899999999999999875321111 1111 2689999999999999998876433333333221
Q ss_pred HhhhhhhhhhcccCchhhHh-hcc--ccCChhhhhhhhhhccCCCCCCCChHHHHHHHH-HcCCCCCCCCCCHHHHHHHH
Q 046115 193 LENEIWELEAIEKGLLAPLL-LSY--NELPSKVKRCFSYCAVFPKDYGIRKHKLIELWM-AQGYLSEKGAKEMEDIGEEY 268 (505)
Q Consensus 193 l~~~~~~l~~~~~~~~~~l~-~s~--~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~-~~~~~~~~~~~~~~~~~~~~ 268 (505)
+-. .. ...+...+. ..+ ..+++..+.++..+|+ . . +...+..... ..+. ......+..+
T Consensus 266 ~~~---~~---~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g--~-~~~~l~~~~~~~~g~------~~~~~~~~~~ 328 (357)
T 2fna_A 266 TLE---YA---KKLILKEFENFLHGREIARKRYLNIMRTLSK--C--G-KWSDVKRALELEEGI------EISDSEIYNY 328 (357)
T ss_dssp HHH---HH---HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--C--B-CHHHHHHHHHHHHCS------CCCHHHHHHH
T ss_pred HHH---HH---HHHHHHHHHHHhhccccccHHHHHHHHHHHc--C--C-CHHHHHHHHHHhcCC------CCCHHHHHHH
Confidence 110 00 000111111 111 1677888999999888 2 2 4444433211 1110 0123457788
Q ss_pred HHHHHHcccccccccCCCCCeeEee-ehHHHHHHH
Q 046115 269 FNILASRSFFQDFNKYDDGEIYKCK-MHDIVHDFA 302 (505)
Q Consensus 269 l~~L~~~~Ll~~~~~~~~~~~~~~~-~H~lv~~~~ 302 (505)
++.|.+.+++.... + .|+ .|++++++.
T Consensus 329 L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 329 LTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred HHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 99999999997543 1 244 688998875
No 18
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.1e-12 Score=113.91 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=102.6
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCc-ccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLT-CLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
+..+.+|+.|++.+|.+.. +|. +..+. +|++|+++ ++.+..+ ..++.+++|++|++++|. ++.+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~----i~~-~~~~~~~L~~L~Ls-------~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV----IEN-LGATLDQFDAIDFS-------DNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCS----CCC-GGGGTTCCSEEECC-------SSCCCEE-CCCCCCSSCCEEECCSSC-CCEEC
T ss_pred cCCcCCceEEEeeCCCCch----hHH-hhhcCCCCCEEECC-------CCCCCcc-cccccCCCCCEEECCCCc-ccccC
Confidence 3467889999999998764 343 44444 89999998 6666666 568889999999999998 77777
Q ss_pred hhh-hcCCCCcEEecCCCcCccccch--hccccccCceeecCCCccccccccc----ccCCccCCccceeEec
Q 046115 431 ETL-CELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPAG----IGELIRLRRVREFVVG 496 (505)
Q Consensus 431 ~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 496 (505)
+.+ +.+++|+.|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++..+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 655 889999999999988 788887 78889999999999998 4567764 7888999988876543
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=7.3e-13 Score=111.63 Aligned_cols=128 Identities=21% Similarity=0.211 Sum_probs=103.9
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
..++|+.|++++|.++. ..+|..+..+++|++|+++ ++.+..+ ..++.+++|++|++++|.....+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTI-------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECT-------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECc-------CCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 34789999999998762 1266667889999999998 5666666 668899999999999999433488877
Q ss_pred hcCCCCcEEecCCCcCccccc--hhccccccCceeecCCCcccccccc----cccCCccCCcccee
Q 046115 434 CELYNLERLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREF 493 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~ 493 (505)
+.+++|+.|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|++.
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 889999999999998 77665 779999999999999997 455554 57889999988753
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.37 E-value=2.1e-12 Score=138.76 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=69.9
Q ss_pred cccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccC
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
.++.+++|++|++++|...+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|++++|...+.+|..+.++++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 34556778888888888666888888888888888888888667888888888888888888888888888888888888
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++-
T Consensus 707 ~~L~ls 712 (768)
T 3rgz_A 707 TEIDLS 712 (768)
T ss_dssp SEEECC
T ss_pred CEEECc
Confidence 877653
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=4.3e-12 Score=118.48 Aligned_cols=147 Identities=26% Similarity=0.363 Sum_probs=110.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.++.+.+..+....++ .+..+++|++|.+.+|.++.. .+..+..+++|++|+++ ++.+..+|+.
T Consensus 64 ~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 128 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS-----ALKELTNLTYLILTGNQLQSL---PNGVFDKLTNLKELVLV-------ENQLQSLPDGV 128 (272)
T ss_dssp TCCEEECTTSCCCCCG-----GGTTCTTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECT-------TSCCCCCCTTT
T ss_pred CCcEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcc---ChhHhcCCcCCCEEECC-------CCcCCccCHHH
Confidence 5677777766655432 455888999999999987654 55557888899999998 5556666554
Q ss_pred ccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
++.+++|++|++++|. ++.+|.. ++.+++|+.|++++|. +..+|+. ++.+++|++|++++|...+..|..+..+++
T Consensus 129 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 6788999999999998 6666654 5788999999999988 6666654 688899999999999855544445788888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 207 L~~L~l~ 213 (272)
T 3rfs_A 207 LQYIWLH 213 (272)
T ss_dssp CCEEECC
T ss_pred CCEEEcc
Confidence 8877754
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.34 E-value=9.7e-12 Score=115.96 Aligned_cols=126 Identities=25% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~ 432 (505)
++++|++|++++|.+... .+..+..+.+|++|+++ ++.+..+|+ .++.+++|++|++++|. ++.+|..
T Consensus 83 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 151 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQAL---PIGVFDQLVNLAELRLD-------RNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKG 151 (270)
T ss_dssp SCTTCCEEECCSSCCCCC---CTTTTTTCSSCCEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCCCCEEECCCCcCCcC---CHhHcccccCCCEEECC-------CCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHh
Confidence 455555555555554432 33334556666666665 444444433 35667777777777776 5555543
Q ss_pred -hhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccccc-cccCCccCCccce
Q 046115 433 -LCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVRE 492 (505)
Q Consensus 433 -~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 492 (505)
+..+++|+.|++++|. +..+|+ .+..+++|++|++++|.. ..+|. .+..+++|+.|++
T Consensus 152 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEEC
T ss_pred HccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcC-CcCCHHHhccccCCCEEEe
Confidence 5667777777777776 555554 366677777777777763 34444 3566666666654
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=7.4e-12 Score=117.79 Aligned_cols=128 Identities=27% Similarity=0.339 Sum_probs=64.2
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-ccCCCCcceeeccCCccccccch-
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN-IEKLLHLKYLNLKGQKKIEKLPE- 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~- 431 (505)
.+++|++|.+.+|.++.. .|..+..+++|++|+++ ++.+..+|.. ++.+++|++|++++|. ++.+|.
T Consensus 103 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 171 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQEL---GPGLFRGLAALQYLYLQ-------DNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER 171 (285)
T ss_dssp TCTTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred CCcCCCEEECCCCcCCEE---CHhHhhCCcCCCEEECC-------CCcccccCHhHhccCCCccEEECCCCc-ccccCHH
Confidence 445555555555544432 33344555555555555 3334444332 4555556666666555 444443
Q ss_pred hhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 432 TLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
.+..+++|+.|++++|......|..+..+++|++|++++|...+..+..+..+++|+.|++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 2455556666666665533333455555566666666665533222223555555555543
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=4.2e-12 Score=119.43 Aligned_cols=149 Identities=25% Similarity=0.303 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCC-ccccccchhHHhhcCcccceEEecccccCCcccccccc-Cc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDE-YSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PT 407 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~ 407 (505)
.++.+.+..+....+. +..+.++++|++|++.+|. +... .|..+..+++|+.|+++ ++.+..+ |.
T Consensus 57 ~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~ 123 (285)
T 1ozn_A 57 NLTILWLHSNVLARID---AAAFTGLALLEQLDLSDNAQLRSV---DPATFHGLGRLHTLHLD-------RCGLQELGPG 123 (285)
T ss_dssp TCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSCTTCCCC---CTTTTTTCTTCCEEECT-------TSCCCCCCTT
T ss_pred CCCEEECCCCccceeC---HhhcCCccCCCEEeCCCCCCcccc---CHHHhcCCcCCCEEECC-------CCcCCEECHh
Confidence 4566666555544332 2344567778888887775 4432 35556777778888877 4444444 45
Q ss_pred cccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
.+..+++|++|++++|. ++.+|. .++.+++|+.|++++|. +..+|.. +..+++|++|++++|...+..|..|.+++
T Consensus 124 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 56777778888888777 555554 36777778888888776 5566653 67777788888887775555566777777
Q ss_pred cCCcccee
Q 046115 486 RLRRVREF 493 (505)
Q Consensus 486 ~L~~L~~~ 493 (505)
+|+.|++.
T Consensus 202 ~L~~L~l~ 209 (285)
T 1ozn_A 202 RLMTLYLF 209 (285)
T ss_dssp TCCEEECC
T ss_pred cccEeeCC
Confidence 77766643
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=4e-12 Score=136.53 Aligned_cols=137 Identities=25% Similarity=0.287 Sum_probs=102.2
Q ss_pred cccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccc
Q 046115 348 IWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIE 427 (505)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 427 (505)
++..+..+++|+.|++++|.+++. +|..+..+++|+.|+++ ++...+.+|..++.+++|++|++++|...+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~------~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGT---IPSSLGSLSKLRDLKLW------LNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECC------SSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCHHHhcCCCCCEEECcCCcccCc---ccHHHhcCCCCCEEECC------CCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 344455778888888888876643 66667778888888887 344444677777788888888888887555
Q ss_pred ccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 428 KLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 428 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
.+|..++.+++|+.|++++|+....+|.+++.+++|++|++++|...+.+|..++++++|+.|++.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 777777888888888888888555778778888888888888887777778778877777777654
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.1e-11 Score=115.59 Aligned_cols=147 Identities=23% Similarity=0.354 Sum_probs=83.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-c
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~ 408 (505)
.+..+.+..+....++. ..+.++++|++|.+.+|.++.. .+..+..+++|++|+++ ++.+..+|. .
T Consensus 38 ~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~i---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~ 104 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPS---KAFHRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLWVT-------DNKLQALPIGV 104 (270)
T ss_dssp TCSEEECCSSCCSCCCT---TSSSSCTTCCEEECCSSCCSCC---CTTTTSSCTTCCEEECC-------SSCCCCCCTTT
T ss_pred CCCEEECcCCCCCeeCH---HHhcCCCCCCEEECCCCccCee---ChhhhcCCCCCCEEECC-------CCcCCcCCHhH
Confidence 45555555555444332 2344666666666666665532 33334556666666666 444555543 3
Q ss_pred ccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccc-cccCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPA-GIGELI 485 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~ 485 (505)
+..+++|++|++++|. +..+|. .++.+++|+.|++++|. +..+|.. +..+++|++|++++|... .+|. .|.+++
T Consensus 105 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 181 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181 (270)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred cccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc-EeChhHhccCC
Confidence 4566666777776666 444433 34666667777776666 5555544 566666667766666533 3333 355666
Q ss_pred cCCccce
Q 046115 486 RLRRVRE 492 (505)
Q Consensus 486 ~L~~L~~ 492 (505)
+|+.|++
T Consensus 182 ~L~~L~L 188 (270)
T 2o6q_A 182 ELKTLKL 188 (270)
T ss_dssp TCCEEEC
T ss_pred CcCEEEC
Confidence 6665554
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.31 E-value=7e-12 Score=118.09 Aligned_cols=147 Identities=24% Similarity=0.274 Sum_probs=119.2
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
..+..+.+..+....++. ..+..+++|+.|++++|.++... . ...+.+|+.|+++ ++.+..+|..
T Consensus 31 ~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~----~-~~~l~~L~~L~Ls-------~N~l~~l~~~ 95 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTKLQ----V-DGTLPVLGTLDLS-------HNQLQSLPLL 95 (290)
T ss_dssp TTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCEEE----C-CSCCTTCCEEECC-------SSCCSSCCCC
T ss_pred CCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCCccCccc----C-CCCCCcCCEEECC-------CCcCCcCchh
Confidence 367777777776655443 34568999999999999987642 2 3678999999998 7778899998
Q ss_pred ccCCCCcceeeccCCccccccc-hhhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCccccccccc-ccCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLP-ETLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELI 485 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~ 485 (505)
+..+++|++|++++|. ++.+| ..+..+++|+.|++++|. +..+|+. +..+++|++|++++|. +..+|.. +..++
T Consensus 96 ~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE 172 (290)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred hccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcC
Confidence 9999999999999999 77776 468999999999999998 7777765 6889999999999998 4567665 57888
Q ss_pred cCCcccee
Q 046115 486 RLRRVREF 493 (505)
Q Consensus 486 ~L~~L~~~ 493 (505)
+|+.|++.
T Consensus 173 ~L~~L~L~ 180 (290)
T 1p9a_G 173 NLDTLLLQ 180 (290)
T ss_dssp TCCEEECC
T ss_pred CCCEEECC
Confidence 88888764
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=1e-11 Score=118.08 Aligned_cols=152 Identities=21% Similarity=0.200 Sum_probs=79.6
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++... +.++++|+.|++.+|.++.... .+..+..+.+|++|+++ ++.+..+|..+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls-------~n~i~~l~~~~ 97 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS-------FNGVITMSSNF 97 (306)
T ss_dssp TCCEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC-------SCSEEEEEEEE
T ss_pred CCCEEECCCCccCccCHhH---hhccccCCEEECCCCccCcccC-cccccccccccCEEECC-------CCccccChhhc
Confidence 6677777766666554432 3467777788887777653311 23334556666666666 44444444444
Q ss_pred cCCCCcceeeccC-------------------------CccccccchhhhcCCCCcEEecCCCcCcc-ccchhccccccC
Q 046115 410 EKLLHLKYLNLKG-------------------------QKKIEKLPETLCELYNLERLNVDDCQNLR-ELPRGIGKLRKL 463 (505)
Q Consensus 410 ~~l~~L~~L~l~~-------------------------~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L 463 (505)
..+++|++|++++ |......|..+..+++|+.|++++|.... .+|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 4445555555544 44222333334455555555555554222 244455555555
Q ss_pred ceeecCCCcccccccccccCCccCCccce
Q 046115 464 MYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 464 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
++|++++|...+..|..+..+++|+.|++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 55555555533333444555555555543
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1.3e-11 Score=110.24 Aligned_cols=131 Identities=27% Similarity=0.383 Sum_probs=87.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.+..+.+..+....++.. .+..+++|++|++.+|.+... .+..+..+.+|++|+++ ++.+..+|..
T Consensus 29 ~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~ 95 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNG---VFDELTSLTQLYLGGNKLQSL---PNGVFNKLTSLTYLNLS-------TNQLQSLPNGV 95 (208)
T ss_dssp TCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECC-------SSCCCCCCTTT
T ss_pred CCcEEEcCCCccCcCChh---hhcccccCcEEECCCCccCcc---ChhhcCCCCCcCEEECC-------CCcCCccCHhH
Confidence 566666666665544432 244677788888887776543 44445677778888877 5555565544
Q ss_pred ccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLR 475 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~ 475 (505)
+..+++|++|++++|. ++.+|.. +..+++|+.|++++|. +..+|.. +..+++|++|++++|....
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeec
Confidence 5677778888888777 5555553 5677778888888777 5555554 6777778888887776443
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=9.8e-12 Score=114.59 Aligned_cols=143 Identities=24% Similarity=0.286 Sum_probs=114.7
Q ss_pred eEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-cccc
Q 046115 332 LHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIE 410 (505)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~ 410 (505)
..+.........+|..++ ++++.|++.+|.++.. .+..+..+++|++|+|+ ++.+..++ ..+.
T Consensus 17 ~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~ 80 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATL---SDATFRGLTKLTWLNLD-------YNQLQTLSAGVFD 80 (251)
T ss_dssp TEEECTTCCCSSCCSCCC------TTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECT-------TSCCCCCCTTTTT
T ss_pred eEEecCCCCccccCCCCC------CCCCEEEccCCCcCcc---CHhHhcCcccCCEEECC-------CCcCCccCHhHhc
Confidence 345555666666666553 5899999999998765 56668899999999999 56666654 4578
Q ss_pred CCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccc-cccCCccC
Q 046115 411 KLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPA-GIGELIRL 487 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L 487 (505)
.+++|++|++++|. ++.+|. .+..+++|+.|++++|. +..+|+. +..+++|++|++++|.. ..+|. .|..+++|
T Consensus 81 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 157 (251)
T 3m19_A 81 DLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNL 157 (251)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred cCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCC
Confidence 99999999999999 667764 56899999999999998 7777775 68899999999999984 45655 68889998
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++.
T Consensus 158 ~~L~L~ 163 (251)
T 3m19_A 158 QTLSLS 163 (251)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 888764
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=2.2e-11 Score=110.42 Aligned_cols=141 Identities=27% Similarity=0.395 Sum_probs=114.7
Q ss_pred EEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-ccCC
Q 046115 334 LLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN-IEKL 412 (505)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l 412 (505)
+.........+|..++ ++|+.|++++|.+++. .|..+..+.+|++|+|+ ++.+..+|.. +..+
T Consensus 24 v~c~~~~l~~ip~~~~------~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~-------~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP------TNAQILYLHDNQITKL---EPGVFDSLINLKELYLG-------SNQLGALPVGVFDSL 87 (229)
T ss_dssp EECTTSCCSSCCSCCC------TTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECC-------SSCCCCCCTTTTTTC
T ss_pred eEccCCCcCccCCCCC------CCCCEEEcCCCccCcc---CHHHhhCccCCcEEECC-------CCCCCCcChhhcccC
Confidence 3333444555665443 7899999999998765 57778899999999999 6777887754 6899
Q ss_pred CCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccc-cccCCccCCcc
Q 046115 413 LHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRV 490 (505)
Q Consensus 413 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 490 (505)
++|++|+|++|. ++.+|.. +..+++|+.|++++|. +..+|..+..+++|++|++++|.+ ..+|. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 88 TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEE
Confidence 999999999998 7777764 5899999999999999 889999999999999999999984 45654 57888888877
Q ss_pred cee
Q 046115 491 REF 493 (505)
Q Consensus 491 ~~~ 493 (505)
++.
T Consensus 165 ~l~ 167 (229)
T 3e6j_A 165 YLF 167 (229)
T ss_dssp ECT
T ss_pred Eee
Confidence 653
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=124.83 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=103.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.+..+.+..+....++. ..+.++++|++|++.+|.++.. .|..+..+++|++|+++ ++.+..+|..
T Consensus 53 ~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~ 119 (353)
T 2z80_A 53 AVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSNGINTI---EEDSFSSLGSLEHLDLS-------YNYLSNLSSSW 119 (353)
T ss_dssp TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECC-------SSCCSSCCHHH
T ss_pred cCcEEECCCCcCcccCH---HHhccCCCCCEEECCCCccCcc---CHhhcCCCCCCCEEECC-------CCcCCcCCHhH
Confidence 66677766666554443 2345778888888888876643 45557777888888887 5666666655
Q ss_pred ccCCCCcceeeccCCccccccch--hhhcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccccccccccCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPE--TLCELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
++.+++|++|++++|. +..+|. .+..+++|+.|++++|..+..++ ..+..+++|++|++++|...+..|..+.+++
T Consensus 120 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 6777888888888877 666765 56777888888888775455554 4577777888888887775555566677777
Q ss_pred cCCcccee
Q 046115 486 RLRRVREF 493 (505)
Q Consensus 486 ~L~~L~~~ 493 (505)
+|+.|++.
T Consensus 199 ~L~~L~l~ 206 (353)
T 2z80_A 199 NVSHLILH 206 (353)
T ss_dssp EEEEEEEE
T ss_pred cCCeecCC
Confidence 76666543
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=4.6e-12 Score=132.93 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred cCcccc--CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCc-Ccc-ccchhcccc------ccCceeecCCCccc
Q 046115 405 IPTNIE--KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQ-NLR-ELPRGIGKL------RKLMYLHNEDTGCL 474 (505)
Q Consensus 405 ~p~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~ 474 (505)
+|..++ .+++|++|++++|...+.+|..++++++|+.|++++|. ... .+|..++.+ ++|++|++++|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 555555 55555555555555445555555555555555555554 222 455555444 55555555555432
Q ss_pred ccccc--cccCCccCCccce
Q 046115 475 RYLPA--GIGELIRLRRVRE 492 (505)
Q Consensus 475 ~~~p~--~i~~l~~L~~L~~ 492 (505)
.+|. .++++++|+.|++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEEC
T ss_pred -ccCchhhhccCCCCCEEeC
Confidence 4554 4555555554443
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.28 E-value=3.3e-11 Score=113.55 Aligned_cols=142 Identities=23% Similarity=0.343 Sum_probs=114.2
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
..++.+.+..+....++. +..+++|+.|++++|.++. +|. +..+++|+.|+++ ++.+..++ .
T Consensus 68 ~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~----~~~-l~~l~~L~~L~L~-------~n~i~~~~-~ 129 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKD----LSS-LKDLKKLKSLSLE-------HNGISDIN-G 129 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC----GGG-GTTCTTCCEEECT-------TSCCCCCG-G
T ss_pred CCCCEEEccCCccCCCcc-----cccCCCCCEEECCCCcCCC----Chh-hccCCCCCEEECC-------CCcCCCCh-h
Confidence 367788887777665544 5589999999999998765 343 7889999999998 66666664 5
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
+..+++|++|++++|. ++.++ .++.+++|+.|++++|. +..+++ +..+++|++|++++|. +..+| .+..+++|+
T Consensus 130 l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~ 203 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLD 203 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCS
T ss_pred hcCCCCCCEEEccCCc-CCcch-hhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc-CCCCh-hhccCCCCC
Confidence 8889999999999998 77774 48999999999999998 777766 8899999999999997 45565 488888888
Q ss_pred ccceeE
Q 046115 489 RVREFV 494 (505)
Q Consensus 489 ~L~~~~ 494 (505)
.|++..
T Consensus 204 ~L~l~~ 209 (291)
T 1h6t_A 204 VLELFS 209 (291)
T ss_dssp EEEEEE
T ss_pred EEECcC
Confidence 888764
No 35
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=7e-12 Score=107.89 Aligned_cols=132 Identities=27% Similarity=0.316 Sum_probs=107.8
Q ss_pred ceeEEEEEecCCC--ccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cC
Q 046115 330 KILHLLLTLRRGA--SVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IP 406 (505)
Q Consensus 330 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p 406 (505)
.++.+.+..+... .+| ..+..+++|+.|++++|.++.. ..+..+++|++|+++ ++.+.. +|
T Consensus 25 ~L~~L~l~~n~l~~~~i~----~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls-------~N~l~~~~~ 88 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIE----GLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELS-------ENRIFGGLD 88 (168)
T ss_dssp SCSEEECCSCBCBTTBCS----SCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEE-------SCCCCSCCC
T ss_pred cCCEEECCCCCCChhhHH----HHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECc-------CCcCchHHH
Confidence 6777777777655 443 3345899999999999998754 347889999999999 555665 67
Q ss_pred ccccCCCCcceeeccCCccccccc--hhhhcCCCCcEEecCCCcCccccch----hccccccCceeecCCCccccccccc
Q 046115 407 TNIEKLLHLKYLNLKGQKKIEKLP--ETLCELYNLERLNVDDCQNLRELPR----GIGKLRKLMYLHNEDTGCLRYLPAG 480 (505)
Q Consensus 407 ~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~~ 480 (505)
..+..+++|++|++++|. ++.+| ..+..+++|+.|++++|+ +..+|. .+..+++|++|++++|. ...+|..
T Consensus 89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 767779999999999998 77776 678999999999999998 777876 68999999999999997 4556643
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=7.8e-12 Score=131.41 Aligned_cols=148 Identities=18% Similarity=0.136 Sum_probs=110.6
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-c
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~ 408 (505)
.++.+.++.+.+..++. ..|.++++|++|++++|.++.. .|..|..+++|++|+|+ ++.+..+|+ .
T Consensus 53 ~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls-------~N~l~~l~~~~ 119 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT-------GNPIQSLALGA 119 (635)
T ss_dssp TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT-------TCCCCEECGGG
T ss_pred CCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc-------CCcCCCCCHHH
Confidence 67788887777766653 3355888899999988887654 45567888889999988 666777765 4
Q ss_pred ccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCcc-ccchhccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
++.+++|++|++++|. ++.+|. .++.+++|+.|++++|.... .+|..++.+++|++|++++|...+..|..+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 6888899999999888 777765 47888889999998887322 35677888888999999888865555666666666
Q ss_pred CCccc
Q 046115 487 LRRVR 491 (505)
Q Consensus 487 L~~L~ 491 (505)
++.+.
T Consensus 199 l~~~~ 203 (635)
T 4g8a_A 199 MPLLN 203 (635)
T ss_dssp CTTCC
T ss_pred hhhhh
Confidence 55443
No 37
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=8.7e-12 Score=128.30 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=101.5
Q ss_pred CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcC
Q 046115 357 GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCEL 436 (505)
Q Consensus 357 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 436 (505)
.|+.|++++|.+++ +|. +..+++|+.|+|+ ++.+..+|..++.+++|++|+|++|. ++.+| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~----lp~-~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV----LCH-LEQLLLVTHLDLS-------HNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS----CCC-GGGGTTCCEEECC-------SSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTC
T ss_pred CceEEEecCCCCCC----CcC-ccccccCcEeecC-------cccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCC
Confidence 58899999998876 455 8899999999999 77788999999999999999999999 77788 69999
Q ss_pred CCCcEEecCCCcCcccc--chhccccccCceeecCCCcccccccccc----cCCccCCccc
Q 046115 437 YNLERLNVDDCQNLREL--PRGIGKLRKLMYLHNEDTGCLRYLPAGI----GELIRLRRVR 491 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~ 491 (505)
++|+.|+|++|. +..+ |..++.+++|++|++++|. +...|+.+ ..+++|+.|+
T Consensus 508 ~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 508 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 999999999998 6666 8899999999999999998 44555543 3467777764
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=7.8e-12 Score=110.64 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=105.7
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETL 433 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 433 (505)
.+++|+.|.+.+|.+.. +| .+..+++|+.|+++ ++.+..++ .++.+++|++|++++|......|..+
T Consensus 42 ~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~l~-------~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD----LT-GIEYAHNIKDLTIN-------NIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSCCSC----CT-TGGGCTTCSEEEEE-------SCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCCccC----hH-HHhcCCCCCEEEcc-------CCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 67899999999998874 44 38889999999999 55555554 68899999999999999544577889
Q ss_pred hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 434 CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
+.+++|+.|++++|......|..++.+++|++|++++|..+..+| .+.++++|+.|++.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 999999999999999555678889999999999999997566776 68888888888764
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=3.5e-12 Score=136.84 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=109.2
Q ss_pred ceeEEEEEecCCCcc-------c-------cccccCCC--CCCCceEEEecCCCccccccchhHHhhcCcccceEEeccc
Q 046115 330 KILHLLLTLRRGASV-------P-------ISIWGNVT--GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVR 393 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~-------~-------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 393 (505)
.++.+.+..+..... + ..+|..++ ++++|+.|.+++|.+.+. +|..+.++++|+.|+|+
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~---iP~~l~~L~~L~~L~Ls-- 523 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ---LPDFLYDLPELQSLNIA-- 523 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS---CCGGGGGCSSCCEEECT--
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc---ChHHHhCCCCCCEEECc--
Confidence 567777777765540 0 01455555 788888888888876554 67778888888888887
Q ss_pred ccCCcccccc--ccCccccCCC-------CcceeeccCCccccccch--hhhcCCCCcEEecCCCcCccccchhcccccc
Q 046115 394 ESWPRNNLIK--EIPTNIEKLL-------HLKYLNLKGQKKIEKLPE--TLCELYNLERLNVDDCQNLRELPRGIGKLRK 462 (505)
Q Consensus 394 ~~~~~~~~~~--~~p~~~~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 462 (505)
++..+. .+|..++.++ +|++|++++|. +..+|. .++.+++|+.|+|++|. +..+| .++.+++
T Consensus 524 ----~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 524 ----CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVK 596 (876)
T ss_dssp ----TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSE
T ss_pred ----CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCc
Confidence 232133 4676555554 88888888888 558887 78888888888888888 55888 7888888
Q ss_pred CceeecCCCcccccccccccCCcc-CCcccee
Q 046115 463 LMYLHNEDTGCLRYLPAGIGELIR-LRRVREF 493 (505)
Q Consensus 463 L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~ 493 (505)
|++|++++|... .+|..+.++++ |+.|++-
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 888888888744 78877888877 8777654
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=3.3e-12 Score=134.04 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=113.4
Q ss_pred ceeEEEEEecCCCcc-------cc-------ccccCCC--CCCCceEEEecCCCccccccchhHHhhcCcccceEEeccc
Q 046115 330 KILHLLLTLRRGASV-------PI-------SIWGNVT--GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVR 393 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~-------~~-------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 393 (505)
.++.+.+..+..... +. .++..+. .+++|++|++.+|.+.+. +|..+.++++|++|+++
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls-- 281 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LPTFLKALPEMQLINVA-- 281 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS---CCTTTTTCSSCCEEECT--
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc---ChHHHhcCCCCCEEECc--
Confidence 567777777765541 00 0555666 788888888888877654 77778888888888888
Q ss_pred ccCCcccccc--ccCccccCC------CCcceeeccCCccccccch--hhhcCCCCcEEecCCCcCccccchhccccccC
Q 046115 394 ESWPRNNLIK--EIPTNIEKL------LHLKYLNLKGQKKIEKLPE--TLCELYNLERLNVDDCQNLRELPRGIGKLRKL 463 (505)
Q Consensus 394 ~~~~~~~~~~--~~p~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 463 (505)
++..+. .+|..++.+ ++|++|++++|. ++.+|. .++.+++|+.|++++|.....+| .++.+++|
T Consensus 282 ----~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 282 ----CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp ----TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred ----CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 233143 577777766 888888888888 668887 78888888888888888444888 88888888
Q ss_pred ceeecCCCcccccccccccCCcc-CCcccee
Q 046115 464 MYLHNEDTGCLRYLPAGIGELIR-LRRVREF 493 (505)
Q Consensus 464 ~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~ 493 (505)
++|++++|. +..+|..+.++++ |+.|++.
T Consensus 356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred CEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence 888888887 4488888888887 8877654
No 41
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=2.5e-11 Score=112.51 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=91.6
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.++.+.+..+....++ .+..+++|+.|++++|.++.. +. +..+++|+.|+++ ++.+..+|...
T Consensus 42 ~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N~i~~~----~~-l~~l~~L~~L~L~-------~N~l~~l~~~~ 104 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHNQISDL----SP-LKDLTKLEELSVN-------RNRLKNLNGIP 104 (263)
T ss_dssp TCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCC----GG-GTTCSSCCEEECC-------SSCCSCCTTCC
T ss_pred cCcEEECcCCCcccch-----HHhhCCCCCEEECCCCccCCC----hh-hccCCCCCEEECC-------CCccCCcCccc
Confidence 4555555555555443 234677788888887776653 22 6777778888877 55566665433
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
. ++|++|++++|. ++.++. ++.+++|+.|++++|. +..+| .+..+++|++|++++|... .+ ..+..+++|+.
T Consensus 105 -~-~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~-~~-~~l~~l~~L~~ 176 (263)
T 1xeu_A 105 -S-ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNW 176 (263)
T ss_dssp -C-SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCC-BC-TTSTTCCCCCE
T ss_pred -c-CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCc-ch-HHhccCCCCCE
Confidence 2 777777777777 666654 7777777777777777 66665 5677777777777777643 33 45666777776
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 177 L~l~ 180 (263)
T 1xeu_A 177 IDLT 180 (263)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 6654
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.28 E-value=2.2e-11 Score=113.94 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-cc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~ 408 (505)
.+..+.+..+....++. ..+.++++|++|++++|.+... .+..+..+++|++|+++ ++.+..++ ..
T Consensus 29 ~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT-------GNPIQSLALGA 95 (276)
T ss_dssp TCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECT-------TCCCCEECTTT
T ss_pred CccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCcc---CHHHccCCcCCCEEECC-------CCccCccChhh
Confidence 56777776666655443 2445788888888888877643 44457778888888887 55555544 55
Q ss_pred ccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccc--cchhccccccCceeecCCCcccccccccccCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRE--LPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
+..+++|++|++++|. +..++. .++.+++|+.|++++|. +.. +|..+..+++|++|++++|......+..+..+.
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 7788888888888887 555544 57788888888888887 443 677788888888888888875444445566666
Q ss_pred cCCccc
Q 046115 486 RLRRVR 491 (505)
Q Consensus 486 ~L~~L~ 491 (505)
+|+.+.
T Consensus 174 ~L~~l~ 179 (276)
T 2z62_A 174 QMPLLN 179 (276)
T ss_dssp TCTTCC
T ss_pred hccccc
Confidence 666443
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=2.7e-11 Score=115.23 Aligned_cols=140 Identities=23% Similarity=0.339 Sum_probs=93.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++ .+..+++|+.|++++|.++.. +. +..+++|+.|+++ ++.+..++. +
T Consensus 86 ~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~-------~n~l~~~~~-l 147 (308)
T 1h6u_A 86 KITELELSGNPLKNVS-----AIAGLQSIKTLDLTSTQITDV----TP-LAGLSNLQVLYLD-------LNQITNISP-L 147 (308)
T ss_dssp SCCEEECCSCCCSCCG-----GGTTCTTCCEEECTTSCCCCC----GG-GTTCTTCCEEECC-------SSCCCCCGG-G
T ss_pred CCCEEEccCCcCCCch-----hhcCCCCCCEEECCCCCCCCc----hh-hcCCCCCCEEECC-------CCccCcCcc-c
Confidence 4555555555544332 244666777777777766542 22 6667777777776 555555554 6
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|. +..++. +..+++|+.|++++|. +..+|+ +..+++|++|++++|. +..++ .+..+++|+.
T Consensus 148 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~ 221 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFI 221 (308)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCE
T ss_pred cCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCE
Confidence 777788888888777 666666 7778888888888877 666664 6777888888888887 34454 3777777777
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 222 L~l~ 225 (308)
T 1h6u_A 222 VTLT 225 (308)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 7654
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.27 E-value=3.8e-11 Score=113.00 Aligned_cols=146 Identities=25% Similarity=0.326 Sum_probs=120.9
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-c
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-T 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~ 407 (505)
..+..+.+..+....++.. ..+++|++|++++|.+.. +|..+..+.+|++|+++ ++.+..+| .
T Consensus 55 ~~L~~L~L~~n~l~~~~~~-----~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~l~-------~N~l~~l~~~ 118 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVD-----GTLPVLGTLDLSHNQLQS----LPLLGQTLPALTVLDVS-------FNRLTSLPLG 118 (290)
T ss_dssp TTCCEEECTTSCCCEEECC-----SCCTTCCEEECCSSCCSS----CCCCTTTCTTCCEEECC-------SSCCCCCCSS
T ss_pred CCCCEEECCCCccCcccCC-----CCCCcCCEEECCCCcCCc----CchhhccCCCCCEEECC-------CCcCcccCHH
Confidence 3677777777776665543 478999999999999874 56667889999999999 77777776 4
Q ss_pred cccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
.+..+++|++|++++|. ++.+|.. +..+++|+.|++++|. +..+|.. +..+++|++|++++|. +..+|..+..+.
T Consensus 119 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~ 195 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSH 195 (290)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccc
Confidence 58899999999999999 7777664 5789999999999999 7888876 5789999999999998 568999988888
Q ss_pred cCCcccee
Q 046115 486 RLRRVREF 493 (505)
Q Consensus 486 ~L~~L~~~ 493 (505)
+|+.|.+.
T Consensus 196 ~L~~l~L~ 203 (290)
T 1p9a_G 196 LLPFAFLH 203 (290)
T ss_dssp CCSEEECC
T ss_pred cCCeEEeC
Confidence 88877654
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.27 E-value=1.9e-11 Score=123.00 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=67.6
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-c
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~ 408 (505)
.+..+.+..+....++.. .+..+++|+.|++++|.+... .+..+..+++|+.|+++ +++.++.+|. .
T Consensus 124 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~------~~~~l~~i~~~~ 191 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSG---AFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLMRLDLG------ELKKLEYISEGA 191 (452)
T ss_dssp TCCEEECCSSCCSBCCTT---TSSSCTTCCEEECCSCCCCEE---CTTTTTTCTTCCEEECC------CCTTCCEECTTT
T ss_pred cCCEEECCCCcCCccChh---hhcccCCCCEEECCCCCccee---CHhHHhcCCcccEEeCC------CCCCccccChhh
Confidence 344444444443333322 233555666666666655432 22234444555555554 2233333332 2
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
+..+++|++|++++|. +..+|. +..+++|+.|+|++|......|..+..+++|++|++++|......|..|.++++|+
T Consensus 192 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 4455555555555555 444443 44555555555555552222233445555555555555543333333444444444
Q ss_pred ccc
Q 046115 489 RVR 491 (505)
Q Consensus 489 ~L~ 491 (505)
.|+
T Consensus 270 ~L~ 272 (452)
T 3zyi_A 270 ELN 272 (452)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.9e-11 Score=113.93 Aligned_cols=140 Identities=21% Similarity=0.281 Sum_probs=113.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
+++.+.+..+....++ .+..+++|++|++++|.++.. +. +..+++|++|+++ ++.+..+|. +
T Consensus 47 ~L~~L~l~~~~i~~~~-----~~~~l~~L~~L~L~~n~l~~~----~~-l~~l~~L~~L~l~-------~n~l~~~~~-l 108 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDI----KP-LANLKNLGWLFLD-------ENKVKDLSS-L 108 (291)
T ss_dssp TCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECC-------SSCCCCGGG-G
T ss_pred cccEEEccCCCcccCh-----hHhcCCCCCEEEccCCccCCC----cc-cccCCCCCEEECC-------CCcCCCChh-h
Confidence 5666666666655543 245789999999999998764 33 8899999999998 666777665 8
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|. +..++. +..+++|+.|++++|. +..+ +.+..+++|++|++++|.. ..++. +..+++|+.
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQN 182 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCE
T ss_pred ccCCCCCEEECCCCc-CCCChh-hcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCE
Confidence 999999999999999 777765 9999999999999998 7777 5789999999999999984 45554 888888888
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++-
T Consensus 183 L~L~ 186 (291)
T 1h6t_A 183 LYLS 186 (291)
T ss_dssp EECC
T ss_pred EECC
Confidence 7754
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.26 E-value=2.9e-11 Score=114.98 Aligned_cols=141 Identities=20% Similarity=0.312 Sum_probs=112.2
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
..++.+.+..+....++. +..+++|+.|++++|.+... + .+..+.+|+.|+++ ++.+..+|.
T Consensus 63 ~~L~~L~L~~n~i~~~~~-----~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~l~-------~n~l~~~~~- 124 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-----LKNLTKITELELSGNPLKNV----S-AIAGLQSIKTLDLT-------STQITDVTP- 124 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCCSCCEEECCSCCCSCC----G-GGTTCTTCCEEECT-------TSCCCCCGG-
T ss_pred CCCCEEEccCCcCCCChh-----HccCCCCCEEEccCCcCCCc----h-hhcCCCCCCEEECC-------CCCCCCchh-
Confidence 367788887777665554 45889999999999987753 3 37888999999998 666777665
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 488 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 488 (505)
+..+++|++|++++|. ++.++. ++.+++|+.|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 125 l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 198 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLI 198 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCC
T ss_pred hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCC
Confidence 8889999999999998 777777 8899999999999998 777776 8889999999999997 445554 77777777
Q ss_pred cccee
Q 046115 489 RVREF 493 (505)
Q Consensus 489 ~L~~~ 493 (505)
.|++.
T Consensus 199 ~L~L~ 203 (308)
T 1h6u_A 199 EVHLK 203 (308)
T ss_dssp EEECT
T ss_pred EEEcc
Confidence 77653
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=3.5e-11 Score=112.30 Aligned_cols=145 Identities=26% Similarity=0.345 Sum_probs=114.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.+..+.+..+....++ .+..+++|++|++.+|.+.+. + .+..+++|++|+++ ++.+..+|+.
T Consensus 42 ~L~~L~l~~~~i~~~~-----~l~~l~~L~~L~l~~n~l~~~----~-~l~~l~~L~~L~L~-------~n~l~~~~~~~ 104 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLHDI----S-ALKELTNLTYLILT-------GNQLQSLPNGV 104 (272)
T ss_dssp TCCEEECTTSCCCCCT-----TGGGCTTCCEEECTTSCCCCC----G-GGTTCTTCCEEECT-------TSCCCCCCTTT
T ss_pred ceeeeeeCCCCccccc-----ccccCCCCcEEECCCCCCCCc----h-hhcCCCCCCEEECC-------CCccCccChhH
Confidence 5566666665554433 345799999999999998753 3 47889999999999 6666666654
Q ss_pred ccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
++.+++|++|++++|. +..+|.. ++.+++|+.|++++|. +..+|+. ++.+++|++|++++|...+..|..+..+++
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 6899999999999999 6666654 6899999999999998 6777765 689999999999999855443444688899
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 183 L~~L~L~ 189 (272)
T 3rfs_A 183 LKDLRLY 189 (272)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 9888765
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.1e-11 Score=117.76 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=108.6
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc--cCc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE--IPT 407 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~p~ 407 (505)
.+..+.+..+....++. ...+..+++|++|++.+|.+... .+..+..+++|+.|+++ ++.+.. .|.
T Consensus 102 ~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~ 169 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMA-------GNSFQENFLPD 169 (306)
T ss_dssp TCCEEECTTSEEESSTT--TTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECT-------TCEEGGGEECS
T ss_pred CCCEEECCCCccccccc--chhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECC-------CCccccccchh
Confidence 44555544444333322 13455788888888888876543 56667788889999888 555543 677
Q ss_pred cccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccccccccCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
.+..+++|++|++++|. +..+ |..+..+++|+.|++++|. +..+|. .+..+++|++|++++|...+..|..+..++
T Consensus 170 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 88889999999999998 5544 6678889999999999988 555554 678889999999999987777777787774
Q ss_pred -cCCccce
Q 046115 486 -RLRRVRE 492 (505)
Q Consensus 486 -~L~~L~~ 492 (505)
+|+.|++
T Consensus 248 ~~L~~L~L 255 (306)
T 2z66_A 248 SSLAFLNL 255 (306)
T ss_dssp TTCCEEEC
T ss_pred ccCCEEEc
Confidence 7777765
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=121.80 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccchh
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPET 432 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~ 432 (505)
.+++|+.|++++|.+... .+..+..+.+|+.|+++ +++.+..++. .+..+++|++|++++|. ++.+|.
T Consensus 134 ~l~~L~~L~L~~N~i~~~---~~~~~~~l~~L~~L~l~------~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~- 202 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESI---PSYAFNRIPSLRRLDLG------ELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN- 202 (440)
T ss_dssp SCSSCCEEECCSCCCCEE---CTTTTTTCTTCCEEECC------CCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-
T ss_pred ccccCceeeCCCCccccc---CHHHhhhCcccCEeCCC------CCCCcceeCcchhhcccccCeecCCCCc-Cccccc-
Confidence 444455555544444322 22234445555555554 2233444433 35566666666666666 566664
Q ss_pred hhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 433 LCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 433 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
+..+++|+.|+|++|......|..+..+++|++|++++|......|..|.++++|+.|++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 666667777777776633333555677777777777777655444555666666666654
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=8.9e-12 Score=132.27 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=95.9
Q ss_pred cCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCcccccc
Q 046115 350 GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKL 429 (505)
Q Consensus 350 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l 429 (505)
..+..+..|+.|+|++|.+.. +|..+..+.+|++|+|+ ++.+..+|..++.|++|++|+|++|. ++.+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~----l~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN----ISANIFKYDFLTRLYLN-------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC----CCGGGGGCCSCSCCBCT-------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred hhhccCCCCcEEECCCCCCCC----CChhhcCCCCCCEEEee-------CCcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 345578888899998888763 45556688889999988 66677888888888999999999888 6688
Q ss_pred chhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccC
Q 046115 430 PETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 483 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~ 483 (505)
|..++.|++|+.|+|++|. +..+|..++.+++|++|++++|.+.+..|..+..
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 8888888999999999887 7788888888889999999988876666665543
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=5e-11 Score=107.33 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=114.2
Q ss_pred EEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccC
Q 046115 333 HLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEK 411 (505)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~ 411 (505)
.+....+....+|..++ ..++.|.+++|.++... .+..+..+++|++|+|+ ++.+..+++ .+..
T Consensus 15 ~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP------QYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFS-------NNKITDIEEGAFEG 79 (220)
T ss_dssp EEECCSSCCSSCCSCCC------TTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECC-------SSCCCEECTTTTTT
T ss_pred EeEeCCCCcccCccCCC------CCCCEEEcCCCcCCccC--chhhhccCCCCCEEECC-------CCcCCEECHHHhCC
Confidence 45555566666665443 45789999999987641 22347889999999998 666777655 6899
Q ss_pred CCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcc
Q 046115 412 LLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRV 490 (505)
Q Consensus 412 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 490 (505)
+++|++|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|++++|...+..|..|..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 9999999999999 666654 58899999999999999444446779999999999999998666557889999999888
Q ss_pred cee
Q 046115 491 REF 493 (505)
Q Consensus 491 ~~~ 493 (505)
++.
T Consensus 159 ~L~ 161 (220)
T 2v70_A 159 NLL 161 (220)
T ss_dssp ECC
T ss_pred Eec
Confidence 753
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=3e-11 Score=121.10 Aligned_cols=149 Identities=23% Similarity=0.278 Sum_probs=106.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
++..+.+..+....++. ..|..+++|+.|++.+|.... ...+..+..+.+|+.|+|+ ++.+..+|. +
T Consensus 137 ~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~-~ 203 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLS--YISEGAFEGLSNLRYLNLA-------MCNLREIPN-L 203 (440)
T ss_dssp SCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCC--EECTTTTTTCSSCCEEECT-------TSCCSSCCC-C
T ss_pred cCceeeCCCCcccccCH---HHhhhCcccCEeCCCCCCCcc--eeCcchhhcccccCeecCC-------CCcCccccc-c
Confidence 56666666666554443 245578889999988854322 1134457788889999998 666777774 7
Q ss_pred cCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc-ccccCCccC
Q 046115 410 EKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRL 487 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L 487 (505)
..+++|++|+|++|. +..+ |..+..+++|+.|++++|......|..+..+++|++|++++|.+. .+| ..+..+++|
T Consensus 204 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 281 (440)
T 3zyj_A 204 TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL 281 (440)
T ss_dssp TTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTC
T ss_pred CCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCC
Confidence 888889999999888 5444 667888899999999998843344556888889999999988744 444 446778888
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++.
T Consensus 282 ~~L~L~ 287 (440)
T 3zyj_A 282 ERIHLH 287 (440)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 777653
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.24 E-value=3e-11 Score=126.31 Aligned_cols=146 Identities=18% Similarity=0.115 Sum_probs=116.3
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Cc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PT 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~ 407 (505)
..++.+.+..+....++. ..|.++++|++|++++|.++.. .|..|..+++|++|+|+ ++.+..+ |.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i---~~~~~~~l~~L~~L~Ls-------~n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCEIETI---EDKAWHGLHHLSNLILT-------GNPIQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT-------TCCCCCCCTT
T ss_pred CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCccccc---CHHHhhchhhcCEeECC-------CCcccccChh
Confidence 477888888777665543 3456899999999999987654 56678899999999998 5556555 77
Q ss_pred cccCCCCcceeeccCCccccccc-hhhhcCCCCcEEecCCCcCcc-ccchhccccccCceeecCCCcccccccccccCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLP-ETLCELYNLERLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
.++.+++|++|++++|. +..+| ..++.+++|++|++++|.... .+|..++++++|++|++++|...+..|..++.+.
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 89999999999999999 66555 568999999999999998433 5788999999999999999986665566677666
Q ss_pred cCC
Q 046115 486 RLR 488 (505)
Q Consensus 486 ~L~ 488 (505)
+|+
T Consensus 178 ~L~ 180 (606)
T 3vq2_A 178 ENP 180 (606)
T ss_dssp HCT
T ss_pred ccc
Confidence 665
No 55
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=7.4e-12 Score=132.86 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=92.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++..+. .+++|++|+|++|.++. +|..+..+.+|++|+|+ ++.+..+|..+
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~----~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~Ls-------~N~l~~lp~~~ 289 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIF----KYDFLTRLYLNGNSLTE----LPAEIKNLSNLRVLDLS-------HNRLTSLPAEL 289 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGG----GCCSCSCCBCTTSCCSC----CCGGGGGGTTCCEEECT-------TSCCSSCCSSG
T ss_pred CCcEEECCCCCCCCCChhhc----CCCCCCEEEeeCCcCcc----cChhhhCCCCCCEEeCc-------CCcCCccChhh
Confidence 45666666666665555444 67788888888887662 56667778888888887 55566777777
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccc-cCceeecCCCccccccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLR-KLMYLHNEDTGCLRYLPAGIG 482 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~i~ 482 (505)
+.|++|++|+|++|. ++.+|..|+.+++|+.|+|++|.....+|..+..+. .+..|++++|...+.+|..+.
T Consensus 290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 788888888888777 677777777888888888888775455565554432 223456777776666666543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=2.3e-11 Score=123.31 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=84.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhh-cCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFE-KLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.+..+....++ +..+..+++|+.|++++|.+++. .|..+. .+++|+.|+|+ ++.+..+|.
T Consensus 121 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~~l~~L~~L~Ls-------~N~l~~~~~- 186 (487)
T 3oja_A 121 GKKNIYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQ-------YNFIYDVKG- 186 (487)
T ss_dssp SCEEEECCSSCCCSGG---GBCGGGGSSEEEEECTTSCCCEE---EGGGGGGGTTTCCEEECT-------TSCCCEEEC-
T ss_pred CCCEEECCCCCCCCCC---chhhcCCCCCCEEECCCCCCCCc---ChHHHhhhCCcccEEecC-------CCccccccc-
Confidence 3455555544443332 22334566666666666666543 333333 56666666666 444444443
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccc-ccccccccCCccC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCL-RYLPAGIGELIRL 487 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~~i~~l~~L 487 (505)
...+++|++|+|++|. ++.+|+.+..+++|+.|++++|. +..+|..+..+++|+.|++++|... +.+|..+..++.|
T Consensus 187 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 3346667777777666 55566556666677777777766 5566666666667777777766644 3445555666655
Q ss_pred Cccce
Q 046115 488 RRVRE 492 (505)
Q Consensus 488 ~~L~~ 492 (505)
+.+..
T Consensus 265 ~~l~~ 269 (487)
T 3oja_A 265 QTVAK 269 (487)
T ss_dssp HHHHH
T ss_pred cEEec
Confidence 55543
No 57
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=8.1e-11 Score=105.04 Aligned_cols=126 Identities=26% Similarity=0.372 Sum_probs=98.6
Q ss_pred CCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-ccCCCCcceeeccCCccccccchh-
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN-IEKLLHLKYLNLKGQKKIEKLPET- 432 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~- 432 (505)
.++|+.|++++|.++.. .+..+..+++|++|+++ ++.+..+|.. +..+++|++|++++|. ++.+|..
T Consensus 27 ~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLG-------GNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CCCCcEEEcCCCccCcC---ChhhhcccccCcEEECC-------CCccCccChhhcCCCCCcCEEECCCCc-CCccCHhH
Confidence 35899999999987654 45557788999999998 6666677654 5789999999999998 6677654
Q ss_pred hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccc-cccCCccCCcccee
Q 046115 433 LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREF 493 (505)
Q Consensus 433 ~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 493 (505)
+..+++|+.|++++|. +..+|+. +..+++|++|++++|... .+|. .+..+++|+.|++.
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEec
Confidence 5889999999999988 6667665 688999999999999754 4554 47788888877654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.23 E-value=5.2e-11 Score=119.77 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=78.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.++.+.+..+....++. ..|.++++|+.|++++|.++.. .+..+..+.+|++|+|+ ++.+..+|+.
T Consensus 76 ~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 142 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQA---DTFRHLHHLEVLQLGRNSIRQI---EVGAFNGLASLNTLELF-------DNWLTVIPSGA 142 (452)
T ss_dssp TCSEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC-------SSCCSBCCTTT
T ss_pred CccEEECcCCcCceECH---HHcCCCCCCCEEECCCCccCCc---ChhhccCcccCCEEECC-------CCcCCccChhh
Confidence 45555555555443322 2334566666666666655433 33445555666666665 3344444332
Q ss_pred ccCCCCcceeeccCCc------------------------cccccch-hhhcCCCCcEEecCCCcCccccchhccccccC
Q 046115 409 IEKLLHLKYLNLKGQK------------------------KIEKLPE-TLCELYNLERLNVDDCQNLRELPRGIGKLRKL 463 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~------------------------~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 463 (505)
+..+++|++|++++|. .++.+|. .+..+++|+.|++++|. +..+| .+..+++|
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccc
Confidence 4455555555555555 3333333 24455555555555555 44444 35556666
Q ss_pred ceeecCCCcccccccccccCCccCCccce
Q 046115 464 MYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 464 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
++|++++|...+..|..|.++++|+.|++
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEe
Confidence 66666666655444556666666666654
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.23 E-value=1e-11 Score=128.31 Aligned_cols=150 Identities=21% Similarity=0.314 Sum_probs=115.1
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
..++.+.+..+....++ +..+.++++|++|++++|.++.. .|..+..+++|++|+|+ ++.+..+|+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTI---EGDAFYSLGSLEHLDLS-------DNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT-------TSCCCSCCHH
T ss_pred CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCcc---ChhhccccccCCEEECC-------CCccCccCHH
Confidence 36777777777665443 33456889999999999987654 55668888999999998 6666666654
Q ss_pred -ccCCCCcceeeccCCcccc--ccchhhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccccccccCC
Q 046115 409 -IEKLLHLKYLNLKGQKKIE--KLPETLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGEL 484 (505)
Q Consensus 409 -~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 484 (505)
++.+++|++|++++|. +. ..|..++.+++|++|++++|..+..+|. .+..+++|++|++++|...+..|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8889999999999988 54 4566788889999999998886777764 68888899999999888777777777777
Q ss_pred ccCCccce
Q 046115 485 IRLRRVRE 492 (505)
Q Consensus 485 ~~L~~L~~ 492 (505)
++|+.|++
T Consensus 172 ~~L~~L~l 179 (549)
T 2z81_A 172 RDIHHLTL 179 (549)
T ss_dssp SEEEEEEE
T ss_pred ccCceEec
Confidence 76666654
No 60
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=8.4e-11 Score=105.86 Aligned_cols=140 Identities=21% Similarity=0.281 Sum_probs=111.1
Q ss_pred EEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCC
Q 046115 336 LTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLH 414 (505)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~ 414 (505)
...+....+|..++ ++|+.|.+.+|.++.. .+..+..+++|++|+|+ ++.+..+ |..+..+++
T Consensus 18 c~~~~l~~iP~~l~------~~l~~L~l~~n~i~~i---~~~~~~~l~~L~~L~Ls-------~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 18 CRGKGLTEIPTNLP------ETITEIRLEQNTIKVI---PPGAFSPYKKLRRIDLS-------NNQISELAPDAFQGLRS 81 (220)
T ss_dssp CTTSCCSSCCSSCC------TTCCEEECCSSCCCEE---CTTSSTTCTTCCEEECC-------SSCCCEECTTTTTTCSS
T ss_pred cCCCCcCcCCCccC------cCCCEEECCCCcCCCc---CHhHhhCCCCCCEEECC-------CCcCCCcCHHHhhCCcC
Confidence 33444555555432 6899999999998764 45568889999999999 5666655 778999999
Q ss_pred cceeeccCCccccccchh-hhcCCCCcEEecCCCcCcccc-chhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 415 LKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 415 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
|++|+|++|. ++.+|.. +..+++|+.|+|++|. +..+ |..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 82 L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 82 LNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 9999999999 8888875 5889999999999999 5555 567899999999999999855444445888888888765
Q ss_pred e
Q 046115 493 F 493 (505)
Q Consensus 493 ~ 493 (505)
.
T Consensus 160 ~ 160 (220)
T 2v9t_B 160 A 160 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=3.7e-11 Score=114.82 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=94.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHh-hcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLF-EKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.+..+....++. ..+..+++|+.|++++|.++.. .+..+ ..+++|++|+++ ++.+..+|.
T Consensus 121 ~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~-------~N~l~~~~~- 186 (317)
T 3o53_A 121 GKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQ-------YNFIYDVKG- 186 (317)
T ss_dssp SCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCEE---EGGGGGGGTTTCCEEECT-------TSCCCEEEC-
T ss_pred CCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCcc---cHHHHhhccCcCCEEECC-------CCcCccccc-
Confidence 45555555555444332 2334567777777777776543 22223 456777777776 555555543
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccc-ccccccccCCccC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCL-RYLPAGIGELIRL 487 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~~i~~l~~L 487 (505)
...+++|++|++++|. ++.+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|... +.+|..+..++.|
T Consensus 187 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 3347777777777777 66676667777777777777776 6677777777777777777777755 4555666667666
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++.
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 666544
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=4.4e-11 Score=121.21 Aligned_cols=148 Identities=26% Similarity=0.274 Sum_probs=87.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN- 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~- 408 (505)
.++.+.+..+....++. ..|..+++|++|++++|.++.. .|..+..+.+|++|+|+ ++.+..+|..
T Consensus 33 ~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 99 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNENIVSAV---EPGAFNNLFNLRTLGLR-------SNRLKLIPLGV 99 (477)
T ss_dssp TCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCSCCTTS
T ss_pred CCcEEECCCCccceECH---hHccCCCCCCEEECCCCccCEe---ChhhhhCCccCCEEECC-------CCcCCccCccc
Confidence 56667766666554432 3445777788888877776543 45567777777777777 5555566543
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc-ccccCCccC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRL 487 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L 487 (505)
+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|++|++++|... .+| ..+.++++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L 178 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCC
Confidence 566777777777777633333445666666666666666632333345566666666666666532 232 224444444
Q ss_pred Cccc
Q 046115 488 RRVR 491 (505)
Q Consensus 488 ~~L~ 491 (505)
+.|+
T Consensus 179 ~~L~ 182 (477)
T 2id5_A 179 IVLR 182 (477)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 4443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.21 E-value=2.5e-11 Score=115.96 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=116.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Ccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~ 408 (505)
.+..+.+..+....++.. .+++|+.|++.+|.++.. .+..+..+++|++|+++ ++.+... |..
T Consensus 100 ~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 163 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS------RGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLK-------LNEIDTVNFAE 163 (317)
T ss_dssp TCCEEECCSSCCSEEEEC------CCSSCEEEECCSSCCCSG---GGBCTGGGSSEEEEECT-------TSCCCEEEGGG
T ss_pred CcCEEECCCCccCCcCcc------ccCCCCEEECCCCCCCCc---cchhhhccCCCCEEECC-------CCCCCcccHHH
Confidence 566777777666655432 467899999999998764 45567889999999999 5555554 444
Q ss_pred c-cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccC
Q 046115 409 I-EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 409 ~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
+ ..+++|++|++++|. ++.+|. ...+++|+.|++++|. +..+|+.+..+++|++|++++|. +..+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCC
Confidence 5 478999999999999 888876 5569999999999999 88898889999999999999998 55789889888888
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++.
T Consensus 240 ~~L~l~ 245 (317)
T 3o53_A 240 EHFDLR 245 (317)
T ss_dssp CEEECT
T ss_pred CEEEcc
Confidence 887754
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=6e-11 Score=121.61 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=117.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~ 408 (505)
.+..+.+..+.... ..+..+..+++|+.|++++|.++.... +|..+..+++|+.|+++ ++.+.. +|..
T Consensus 325 ~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls-------~N~l~~~l~~~ 393 (520)
T 2z7x_B 325 PFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDIS-------QNSVSYDEKKG 393 (520)
T ss_dssp CCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECC-------SSCCBCCGGGC
T ss_pred cccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECC-------CCcCCcccccc
Confidence 55666666655443 234456689999999999999876422 66778999999999998 555555 7765
Q ss_pred -ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccc-ccCCcc
Q 046115 409 -IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG-IGELIR 486 (505)
Q Consensus 409 -~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~ 486 (505)
+..+++|++|++++|...+.+|..+. ++|+.|++++|. +..+|..+..+++|++|++++|. +..+|.. +..+++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTS 469 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCc
Confidence 77889999999999995566666543 789999999998 77999998899999999999998 5578876 888888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 470 L~~L~l~ 476 (520)
T 2z7x_B 470 LQKIWLH 476 (520)
T ss_dssp CCEEECC
T ss_pred ccEEECc
Confidence 8887754
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=8.1e-11 Score=126.30 Aligned_cols=125 Identities=21% Similarity=0.224 Sum_probs=80.0
Q ss_pred CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCC--------CCcceeeccCCccccc
Q 046115 357 GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKL--------LHLKYLNLKGQKKIEK 428 (505)
Q Consensus 357 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l--------~~L~~L~l~~~~~~~~ 428 (505)
+|+.|++++|.++.. .+..+..+++|+.|+|+ ++.+..+|..+... ++|++|+|++|. +..
T Consensus 674 ~L~~L~Ls~N~L~~l---p~~~~~~l~~L~~L~Ls-------~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~ 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQKF---PTELFATGSPISTIILS-------NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS 742 (876)
T ss_dssp CEEEEECCSSCCCSC---CHHHHHTTCCCSEEECC-------SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC
T ss_pred CcCEEEccCCcCCcc---CHHHHccCCCCCEEECC-------CCcCCccChHHhccccccccccCCccEEECCCCC-Ccc
Confidence 666666666665532 23333467777777777 45555666544332 267777777776 557
Q ss_pred cchhhh--cCCCCcEEecCCCcCccccchhccccccCceeecCC------CcccccccccccCCccCCcccee
Q 046115 429 LPETLC--ELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNED------TGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 429 lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~------~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
+|..+. .+++|+.|+|++|. +..+|..+..+++|+.|++++ |...+.+|..|.++++|+.|++-
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 777665 67777777777776 455777777777777777755 55556666667777777666553
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=4.7e-11 Score=105.08 Aligned_cols=129 Identities=26% Similarity=0.268 Sum_probs=101.3
Q ss_pred EEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhH-HhhcCcccceEEecccccCCcccccccc-Ccccc
Q 046115 333 HLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQ-LFEKLTCLRALELQVRESWPRNNLIKEI-PTNIE 410 (505)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~ 410 (505)
.+....+....+|..++ .+++.|++.+|.++.. .+. .+..+++|++|+|+ ++.+..+ |..++
T Consensus 12 ~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP------LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELK-------RNQLTGIEPNAFE 75 (192)
T ss_dssp EEECTTSCCSSCCSCCC------TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECC-------SSCCCCBCTTTTT
T ss_pred EEEcCCCCcCcCccCCC------CCCCEEECCCCcCCcc---CCccccccCCCCCEEECC-------CCCCCCcCHhHcC
Confidence 45555566666665543 3899999999998764 332 47889999999998 5666655 67899
Q ss_pred CCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc
Q 046115 411 KLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p 478 (505)
.+++|++|+|++|. ++.++. .+..+++|+.|+|++|......|..+..+++|++|++++|......+
T Consensus 76 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999 665554 57899999999999999555567789999999999999998665443
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.20 E-value=3.9e-11 Score=126.03 Aligned_cols=135 Identities=22% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceee
Q 046115 341 GASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLN 419 (505)
Q Consensus 341 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~ 419 (505)
...+|.++| ++++.|+|++|.++.. .+..|..+++|++|+|+ ++.+..+|+ .|+.+++|++|+
T Consensus 43 l~~vP~~lp------~~~~~LdLs~N~i~~l---~~~~f~~l~~L~~L~Ls-------~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 43 FYKIPDNLP------FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp CSSCCSSSC------TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT-------TCCCCEECTTTTTTCTTCCEEE
T ss_pred cCccCCCCC------cCCCEEEeeCCCCCCC---CHHHHhCCCCCCEEECC-------CCcCCCcChhHhcCCCCCCEEE
Confidence 345665544 5799999999998764 55678999999999999 677777765 588999999999
Q ss_pred ccCCccccccch-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccc-cccccccCCccCCcccee
Q 046115 420 LKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLR-YLPAGIGELIRLRRVREF 493 (505)
Q Consensus 420 l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~ 493 (505)
|++|+ ++.+|. .++.+++|++|++++|. +..+|+ .++++++|++|++++|.... ..|..++.+++|++|++.
T Consensus 107 Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 107 LTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred ccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999 888875 57899999999999998 777776 48999999999999998543 456778889999888754
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.20 E-value=5.7e-11 Score=111.11 Aligned_cols=126 Identities=23% Similarity=0.247 Sum_probs=105.0
Q ss_pred CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccc-hhh
Q 046115 356 RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLP-ETL 433 (505)
Q Consensus 356 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~ 433 (505)
++|++|++++|.++.. .+..+..+++|++|+++ ++.+..++. .+..+++|++|++++|. +..++ ..+
T Consensus 28 ~~l~~L~ls~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEE---CTTTTTTCTTCSEEECT-------TCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCccccc---CHhHhccccCCcEEECC-------CCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 5799999999998764 44468899999999999 566666654 68899999999999999 65555 668
Q ss_pred hcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccc-cccccccCCccCCcccee
Q 046115 434 CELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLR-YLPAGIGELIRLRRVREF 493 (505)
Q Consensus 434 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~ 493 (505)
..+++|+.|++++|. +..++. .++.+++|++|++++|.... .+|..+.++++|+.|++-
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 999999999999998 666655 68999999999999998544 368889999999988764
No 69
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=5.1e-11 Score=115.99 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=106.3
Q ss_pred ceeEEEEEecCCCccccccccCCC-CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVT-GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT- 407 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~- 407 (505)
.+..+.+..+....++.. .+. ++++|+.|++++|.++.. .+..|..+.+|+.|+|+ ++.+..+|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~---~~~~~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~ 106 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAE---WTPTRLTNLHSLLLSHNHLNFI---SSEAFVPVPNLRYLDLS-------SNHLHTLDEF 106 (361)
T ss_dssp TCSEEECCSSCCCEECTT---SSSSCCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCEECTT
T ss_pred CCCEEECCCCCCCccChh---hhhhcccccCEEECCCCcCCcc---ChhhccCCCCCCEEECC-------CCcCCcCCHH
Confidence 567777777776655543 344 788999999999988754 45568888999999998 666666654
Q ss_pred cccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccchhc----cccccCceeecCCCcccccccc-cc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPRGI----GKLRKLMYLHNEDTGCLRYLPA-GI 481 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~p~-~i 481 (505)
.+..+++|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|..+ ..+++|++|++++|. +..+|. .+
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 183 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL 183 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh
Confidence 47889999999999998 5554 6678899999999999988 78888765 578899999999997 445553 45
Q ss_pred cCCcc
Q 046115 482 GELIR 486 (505)
Q Consensus 482 ~~l~~ 486 (505)
..++.
T Consensus 184 ~~l~~ 188 (361)
T 2xot_A 184 QKLPA 188 (361)
T ss_dssp HHSCH
T ss_pred hhccH
Confidence 55554
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2.5e-11 Score=102.14 Aligned_cols=124 Identities=28% Similarity=0.336 Sum_probs=100.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~ 408 (505)
.++.+.+..+.... ..++..+..+++|+.|++.+|.++.. ..+..+++|++|+++ ++.+.. +|..
T Consensus 18 ~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls-------~n~i~~~~~~~ 83 (149)
T 2je0_A 18 DVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELS-------DNRVSGGLEVL 83 (149)
T ss_dssp GCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECC-------SSCCCSCTHHH
T ss_pred cCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECC-------CCcccchHHHH
Confidence 66777777766540 22334456899999999999998764 447889999999999 666666 7777
Q ss_pred ccCCCCcceeeccCCccccccc--hhhhcCCCCcEEecCCCcCccccch----hccccccCceeecC
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLP--ETLCELYNLERLNVDDCQNLRELPR----GIGKLRKLMYLHNE 469 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~ 469 (505)
++.+++|++|++++|. ++.+| ..++.+++|+.|++++|. +..+|+ .+..+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7789999999999999 77665 778999999999999998 777776 68999999999876
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.20 E-value=4.8e-11 Score=120.92 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=115.2
Q ss_pred EecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCc
Q 046115 337 TLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHL 415 (505)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L 415 (505)
.......+|..++ ++++.|++++|.++.. .+..|..+++|++|+|+ ++.+..+ |..++.+++|
T Consensus 19 ~~~~l~~ip~~~~------~~l~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 19 HRKRFVAVPEGIP------TETRLLDLGKNRIKTL---NQDEFASFPHLEELELN-------ENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp CSCCCSSCCSCCC------TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTCTTC
T ss_pred CCCCcCcCCCCCC------CCCcEEECCCCccceE---CHhHccCCCCCCEEECC-------CCccCEeChhhhhCCccC
Confidence 3344555665443 5899999999998765 56678999999999999 5556555 7789999999
Q ss_pred ceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccceeE
Q 046115 416 KYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFV 494 (505)
Q Consensus 416 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 494 (505)
++|+|++|. ++.+|.. +..+++|+.|+|++|......|..+..+++|++|++++|......|..|.++++|+.|++..
T Consensus 83 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 83 RTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 999999999 8888764 68999999999999995555567799999999999999986666677899999999888753
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.20 E-value=3e-11 Score=126.35 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc--cCccccCCCCcceeeccCCcccccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE--IPTNIEKLLHLKYLNLKGQKKIEKL 429 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~l 429 (505)
+..+++|+.|++++|.+... .|..+..+++|+.|+++ ++.+.. .|..++.+++|++|++++|...+..
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKID---FDGIFLGLTSLNTLKMA-------GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp TTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECT-------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred hhccccCCEEECcCCCCCcc---chhhhcCCCCCCEEECC-------CCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 34555666666666654432 44556666666666666 333332 5666777777777777777733344
Q ss_pred chhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCc-cCCccce
Q 046115 430 PETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI-RLRRVRE 492 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~ 492 (505)
|..++.+++|+.|++++|......|..+..+++|++|++++|. +..+|..+..++ +|+.|++
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEEC
T ss_pred hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEc
Confidence 5566777777777777777444446667777777777777776 446776666665 4666654
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=5.4e-11 Score=123.17 Aligned_cols=141 Identities=23% Similarity=0.332 Sum_probs=114.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++. +..+++|+.|.|++|.++.. | .+..+.+|+.|+|+ ++.+..++ .+
T Consensus 66 ~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l----~-~l~~l~~L~~L~Ls-------~N~l~~l~-~l 127 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKDL----S-SLKDLKKLKSLSLE-------HNGISDIN-GL 127 (605)
T ss_dssp TCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCC----T-TSTTCTTCCEEECT-------TSCCCCCG-GG
T ss_pred CCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCCC----h-hhccCCCCCEEEec-------CCCCCCCc-cc
Confidence 67788887777665554 55899999999999988753 3 37889999999998 66666664 58
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
..+++|+.|+|++|. +..++ .++.+++|+.|+|++|. +..+++ +..+++|++|++++|. +..+| .+..+++|+.
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDV 201 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSE
T ss_pred cCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCE
Confidence 899999999999998 77774 48999999999999998 666665 8999999999999997 44554 5888888888
Q ss_pred cceeE
Q 046115 490 VREFV 494 (505)
Q Consensus 490 L~~~~ 494 (505)
|++..
T Consensus 202 L~L~~ 206 (605)
T 1m9s_A 202 LELFS 206 (605)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 87653
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=7e-11 Score=123.12 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=42.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Ccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~ 408 (505)
.+..+.+..+....++. ..|.++++|++|++++|.++.. ++..+..+++|++|+|+ ++.+..+ |..
T Consensus 100 ~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 166 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERNDLSSL---PRGIFHNTPKLTTLSMS-------NNNLERIEDDT 166 (597)
T ss_dssp TCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECC-------SSCCCBCCTTT
T ss_pred CCCEEECCCCcCCCCCH---HHHcCCCCCCEEEeeCCCCCCC---CHHHhccCCCCCEEEee-------CCcCCCCChhh
Confidence 34444444444333332 2234566666666666655432 33334556666666665 3333333 334
Q ss_pred ccCCCCcceeeccCCc
Q 046115 409 IEKLLHLKYLNLKGQK 424 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~ 424 (505)
++.+++|++|++++|.
T Consensus 167 ~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 167 FQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred hhcCCcCcEEECcCCC
Confidence 5666666666666665
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.18 E-value=5.6e-11 Score=108.57 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=59.0
Q ss_pred CCCCceEEEecC-CCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcc---eeeccCCcccccc
Q 046115 354 GLRGLRSLLVKS-DEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLK---YLNLKGQKKIEKL 429 (505)
Q Consensus 354 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~---~L~l~~~~~~~~l 429 (505)
++++|++|++.+ |.++.. .+..+..+++|+.|+++ ++.+..+|. ++.+++|+ +|++++|..++.+
T Consensus 78 ~l~~L~~L~l~~~n~l~~i---~~~~f~~l~~L~~L~l~-------~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYI---DPDALKELPLLKFLGIF-------NTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp SCTTCCEEEEEEETTCCEE---CTTSEECCTTCCEEEEE-------EECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEE
T ss_pred CCcCCcEEECCCCCCeeEc---CHHHhCCCCCCCEEeCC-------CCCCccccc-cccccccccccEEECCCCcchhhc
Confidence 445555555554 444332 22334445555555554 333444443 44444444 5555555114444
Q ss_pred ch-hhhcCCCCc-EEecCCCcCccccchhccccccCceeecCCCccccccc-ccccCC-ccCCccc
Q 046115 430 PE-TLCELYNLE-RLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGEL-IRLRRVR 491 (505)
Q Consensus 430 p~-~~~~l~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l-~~L~~L~ 491 (505)
|. .+..+++|+ .|++++|. +..+|......++|++|++++|..+..+| ..|..+ ++|+.|+
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred CcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 43 245555555 55555555 44555443333555555555553123333 234455 5555444
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=8.7e-11 Score=121.61 Aligned_cols=123 Identities=25% Similarity=0.351 Sum_probs=101.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++ .+..+++|+.|.+++|.++.. +. +..+++|+.|+|+ ++.+..+ +.+
T Consensus 88 ~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l----~~-l~~l~~L~~L~Ls-------~N~l~~l-~~l 149 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLS-----SLKDLKKLKSLSLEHNGISDI----NG-LVHLPQLESLYLG-------NNKITDI-TVL 149 (605)
T ss_dssp TCCEEECCSSCCCCCT-----TSTTCTTCCEEECTTSCCCCC----GG-GGGCTTCSEEECC-------SSCCCCC-GGG
T ss_pred CCCEEECcCCCCCCCh-----hhccCCCCCEEEecCCCCCCC----cc-ccCCCccCEEECC-------CCccCCc-hhh
Confidence 6778888777766543 456899999999999998753 33 7889999999998 6666666 568
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 474 (505)
+.+++|+.|+|++|. +..+++ +..+++|+.|+|++|. +..+| .+..+++|+.|++++|.+.
T Consensus 150 ~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred cccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcCc
Confidence 899999999999998 777766 9999999999999998 77775 6889999999999999854
No 77
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=6.4e-11 Score=115.30 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=94.5
Q ss_pred EEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhh-cCcccceEEecccccCCccccccccC-ccccC
Q 046115 334 LLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFE-KLTCLRALELQVRESWPRNNLIKEIP-TNIEK 411 (505)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~ 411 (505)
+....+....+|..++ ..++.|++++|.++.. .+..+. .+.+|+.|+|+ ++.+..++ ..+..
T Consensus 23 l~c~~~~l~~iP~~~~------~~l~~L~Ls~N~l~~l---~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP------SYTALLDLSHNNLSRL---RAEWTPTRLTNLHSLLLS-------HNHLNFISSEAFVP 86 (361)
T ss_dssp EECCSSCCSSCCSSCC------TTCSEEECCSSCCCEE---CTTSSSSCCTTCCEEECC-------SSCCCEECTTTTTT
T ss_pred EEeCCCCcCccCccCC------CCCCEEECCCCCCCcc---ChhhhhhcccccCEEECC-------CCcCCccChhhccC
Confidence 3444444555554433 4577888888877654 444455 78888888887 56666665 35778
Q ss_pred CCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCcccc-chhccccccCceeecCCCcccccccccc----cCCc
Q 046115 412 LLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGI----GELI 485 (505)
Q Consensus 412 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i----~~l~ 485 (505)
+++|++|+|++|. +..+|. .+..+++|+.|+|++|. +..+ |..+..+++|++|++++|. +..+|..+ ..++
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLP 163 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CT
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCC
Confidence 8888888888888 666654 46788888888888888 4444 5567888888888888887 45566553 4566
Q ss_pred cCCccce
Q 046115 486 RLRRVRE 492 (505)
Q Consensus 486 ~L~~L~~ 492 (505)
+|+.|++
T Consensus 164 ~L~~L~L 170 (361)
T 2xot_A 164 KLMLLDL 170 (361)
T ss_dssp TCCEEEC
T ss_pred cCCEEEC
Confidence 6666554
No 78
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=7.1e-11 Score=103.90 Aligned_cols=113 Identities=26% Similarity=0.249 Sum_probs=83.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-c
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-N 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~ 408 (505)
.+..+.+..+....++.. ..+..+++|+.|++++|.+++. .|..+..+.+|++|+|+ ++.+..+++ .
T Consensus 30 ~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGI---EPNAFEGASHIQELQLG-------ENKIKEISNKM 97 (192)
T ss_dssp TCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECC-------SCCCCEECSSS
T ss_pred CCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCCCc---CHhHcCCcccCCEEECC-------CCcCCccCHHH
Confidence 677777777776655432 1245788999999999987764 56678888899999998 555666554 4
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELP 454 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 454 (505)
+..+++|++|++++|...+..|..+..+++|+.|++++|+.....+
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7888999999999998444557778888899999999988544443
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=2.2e-10 Score=110.05 Aligned_cols=147 Identities=20% Similarity=0.270 Sum_probs=75.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++.. .+.++++|+.|++.+|.+.... ..+..+..+++|++|+++ ++.+..+|..+
T Consensus 122 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~l~-------~n~l~~l~~~~ 190 (330)
T 1xku_A 122 TLQELRVHENEITKVRKS---VFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIA-------DTNITTIPQGL 190 (330)
T ss_dssp TCCEEECCSSCCCBBCHH---HHTTCTTCCEEECCSSCCCGGG-BCTTGGGGCTTCCEEECC-------SSCCCSCCSSC
T ss_pred cccEEECCCCcccccCHh---HhcCCccccEEECCCCcCCccC-cChhhccCCCCcCEEECC-------CCccccCCccc
Confidence 555666655555444332 2346677777777777664321 144456667777777776 44444444433
Q ss_pred cCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccccccccccCCccC
Q 046115 410 EKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
. ++|++|++++|. +..+ |..+..+++|+.|++++|. +..++ ..+..+++|++|++++|. +..+|..+..+++|
T Consensus 191 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L 265 (330)
T 1xku_A 191 P--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYI 265 (330)
T ss_dssp C--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSC
T ss_pred c--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCc
Confidence 2 455555555555 3322 3445555555555555555 33332 245555555555555554 33455555555555
Q ss_pred Cccce
Q 046115 488 RRVRE 492 (505)
Q Consensus 488 ~~L~~ 492 (505)
+.|++
T Consensus 266 ~~L~l 270 (330)
T 1xku_A 266 QVVYL 270 (330)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 54443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=4.5e-11 Score=109.21 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=118.5
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCC-ccccccchhHHhhcCcccceEEecccccCCcc-ccccccC-
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDE-YSWSSEVLPQLFEKLTCLRALELQVRESWPRN-NLIKEIP- 406 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~p- 406 (505)
.+..+.+..+....++.. .+.++++|++|++.+|. ++.. .+..+..+++|++|+++ + +.+..+|
T Consensus 32 ~l~~L~l~~n~l~~i~~~---~~~~l~~L~~L~l~~n~~l~~i---~~~~f~~l~~L~~L~l~-------~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH---AFSNLPNISRIYVSIDVTLQQL---ESHSFYNLSKVTHIEIR-------NTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESCCCSEECTT---TTTTCTTCCEEEEECCSSCCEE---CTTTEESCTTCCEEEEE-------EETTCCEECT
T ss_pred cccEEEEeCCcceEECHH---HccCCCCCcEEeCCCCCCccee---CHhHcCCCcCCcEEECC-------CCCCeeEcCH
Confidence 788888888887766642 45689999999999996 6653 44467889999999998 5 6777776
Q ss_pred ccccCCCCcceeeccCCccccccchhhhcCCCCc---EEecCCCcCccccchh-ccccccCc-eeecCCCcccccccccc
Q 046115 407 TNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLE---RLNVDDCQNLRELPRG-IGKLRKLM-YLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 407 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~p~~i 481 (505)
..+..+++|++|++++|. +..+|. ++.+++|+ .|++++|..+..+|+. +..+++|+ +|++++|.. ..+|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTT
T ss_pred HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhh
Confidence 467899999999999999 778988 88888888 9999999348888765 88999999 999999984 5777754
Q ss_pred cCCccCCcccee
Q 046115 482 GELIRLRRVREF 493 (505)
Q Consensus 482 ~~l~~L~~L~~~ 493 (505)
...++|+.|++.
T Consensus 176 ~~~~~L~~L~L~ 187 (239)
T 2xwt_C 176 FNGTKLDAVYLN 187 (239)
T ss_dssp TTTCEEEEEECT
T ss_pred cCCCCCCEEEcC
Confidence 444667666543
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=9.4e-11 Score=121.57 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=110.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-cc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~ 408 (505)
.++.+.+..+....++. ..|.++++|++|++++|.++.. .|..+..+++|++|+|+ ++.+..+| ..
T Consensus 29 ~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT-------GNPIQSLALGA 95 (570)
T ss_dssp SCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT-------TCCCCEECTTT
T ss_pred cccEEEccCCccCccCh---hHhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCc-------CCcCCccCHhh
Confidence 67778877777665543 3456889999999999987654 56668889999999998 55565554 56
Q ss_pred ccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCcc-ccchhccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
++.+++|++|++++|. +..+|. .++.+++|++|++++|.... .+|..++++++|++|++++|......|..++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 8889999999999988 777765 57889999999999988333 46888889999999999998755544556666666
Q ss_pred C
Q 046115 487 L 487 (505)
Q Consensus 487 L 487 (505)
|
T Consensus 175 L 175 (570)
T 2z63_A 175 M 175 (570)
T ss_dssp C
T ss_pred c
Confidence 6
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.17 E-value=6.6e-11 Score=114.91 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=113.9
Q ss_pred EecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCc
Q 046115 337 TLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHL 415 (505)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L 415 (505)
..+....+|..++ ++|+.|++++|.++.. .+..+..+++|+.|+++ ++.+..+ |..++.+++|
T Consensus 39 ~~~~l~~iP~~~~------~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 39 SSGSLNSIPSGLT------EAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLT-------SNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CSTTCSSCCTTCC------TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTCTTC
T ss_pred CCCCccccccccc------ccCcEEECCCCcCccc---CHHHhccCCCCCEEECC-------CCccCccCHhhcCCCCCC
Confidence 3445566665443 5899999999998754 45468899999999998 5566665 4568999999
Q ss_pred ceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccch--hccccccCceeecCCCcccccc-cccccCCccCCccc
Q 046115 416 KYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYL-PAGIGELIRLRRVR 491 (505)
Q Consensus 416 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~ 491 (505)
++|++++|. ++.+|.. ++.+++|+.|++++|. +..+|. .+..+++|++|++++|..+..+ |..+.++++|+.|+
T Consensus 103 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 103 EHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 999999999 7788876 7899999999999998 778887 6899999999999999545555 45688999999888
Q ss_pred eeE
Q 046115 492 EFV 494 (505)
Q Consensus 492 ~~~ 494 (505)
+..
T Consensus 181 l~~ 183 (353)
T 2z80_A 181 IDA 183 (353)
T ss_dssp EEE
T ss_pred CCC
Confidence 764
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=1e-10 Score=120.73 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=104.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+............+..+++|+.|++++|.++.... .+..+..+++|++|+++ ++.+..+|..+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~ 406 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-TGEILLTLKNLTSLDIS-------RNTFHPMPDSC 406 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH-HHHHGGGCTTCCEEECT-------TCCCCCCCSCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc-chhhhhcCCCCCEEECC-------CCCCccCChhh
Confidence 44555555554432211112234567788888888887765311 12447788888888888 66677788877
Q ss_pred cCCCCcceeeccCCccccccchhh------------------hcCCCCcEEecCCCcCccccchhccccccCceeecCCC
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETL------------------CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDT 471 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~------------------~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 471 (505)
+.+++|++|++++|. +..+|..+ ..+++|+.|++++|. +..+|. ...+++|++|++++|
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSS
T ss_pred cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCC
Confidence 788888888888887 55555432 257788888888887 678886 467888999999998
Q ss_pred cccccccccccCCccCCcccee
Q 046115 472 GCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 472 ~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
...+..|..+..+++|+.|++.
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCCcCHHHHhcCcccCEEEec
Confidence 8655555557888888877753
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=3.4e-11 Score=122.03 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=118.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~ 408 (505)
.+..+.+..+....++.. .+++|+.|++.+|.+++. .|..+..+++|+.|+|+ ++.+.. .|..
T Consensus 100 ~L~~L~L~~N~l~~~~~~------~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 163 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS------RGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLK-------LNEIDTVNFAE 163 (487)
T ss_dssp TCCEEECCSSCCCCEEEC------CCSSCEEEECCSSCCCSG---GGBCGGGGSSEEEEECT-------TSCCCEEEGGG
T ss_pred CcCEEECcCCcCCCCCcc------ccCCCCEEECCCCCCCCC---CchhhcCCCCCCEEECC-------CCCCCCcChHH
Confidence 566777777766655543 468899999999998765 56668889999999999 555544 5666
Q ss_pred cc-CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccC
Q 046115 409 IE-KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 487 (505)
Q Consensus 409 ~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 487 (505)
+. .+++|++|+|++|. ++.+|. ...+++|+.|+|++|. +..+|+.+..+++|+.|++++|. +..+|..+..+++|
T Consensus 164 l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L 239 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL 239 (487)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred HhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCC
Confidence 65 79999999999999 777776 5579999999999999 88898889999999999999998 55789889888888
Q ss_pred Ccccee
Q 046115 488 RRVREF 493 (505)
Q Consensus 488 ~~L~~~ 493 (505)
+.|++.
T Consensus 240 ~~L~l~ 245 (487)
T 3oja_A 240 EHFDLR 245 (487)
T ss_dssp CEEECT
T ss_pred CEEEcC
Confidence 887753
No 85
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=1.3e-10 Score=100.70 Aligned_cols=128 Identities=27% Similarity=0.379 Sum_probs=100.8
Q ss_pred EEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-ccC
Q 046115 333 HLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN-IEK 411 (505)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~-~~~ 411 (505)
.+....+....+|... .++|+.|.+.+|.+... .+..+..+.+|++|+++ ++.+..+|+. ++.
T Consensus 11 ~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI------PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFDK 74 (177)
T ss_dssp EEECCSSCCSSCCTTC------CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEecCCCCccCCCCC------CCCCcEEEeCCCcccEe---CHHHhcCcccccEEECC-------CCcceEeChhHccC
Confidence 3444445555555433 36899999999998754 55557889999999998 6667777655 689
Q ss_pred CCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCccccccc
Q 046115 412 LLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 412 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p 478 (505)
+++|++|++++|. ++.+|.. +..+++|+.|++++|. +..+|.. +..+++|++|++++|...+..|
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999 7777764 5899999999999998 7788876 5889999999999998665444
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=1.4e-10 Score=120.11 Aligned_cols=149 Identities=15% Similarity=0.231 Sum_probs=114.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~ 408 (505)
.+..+.+..+.... ..+..+..+++|+.|++.+|.+++... +|..+..+++|+.|+++ ++.+.. +|..
T Consensus 354 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~ 422 (562)
T 3a79_B 354 SFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFK-VALMTKNMSSLETLDVS-------LNSLNSHAYDR 422 (562)
T ss_dssp CCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTH-HHHTTTTCTTCCEEECT-------TSCCBSCCSSC
T ss_pred CceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCccc-chhhhcCCCCCCEEECC-------CCcCCCccChh
Confidence 55666666555443 334556689999999999998876432 56668889999999998 555555 6654
Q ss_pred -ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccc-ccCCcc
Q 046115 409 -IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG-IGELIR 486 (505)
Q Consensus 409 -~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~ 486 (505)
+..+++|++|++++|...+.+|..+. ++|+.|++++|. +..+|..+..+++|++|++++|. +..+|.. +..+++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCC
Confidence 67889999999999995556665443 689999999998 88999988899999999999998 4578877 888888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 499 L~~L~l~ 505 (562)
T 3a79_B 499 LQYIWLH 505 (562)
T ss_dssp CCCEECC
T ss_pred CCEEEec
Confidence 8877654
No 87
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.8e-10 Score=101.36 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=98.5
Q ss_pred EEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCC
Q 046115 334 LLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKL 412 (505)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l 412 (505)
+....+....+|..++ ++|+.|++.+|.++. +|..+..+.+|+.|+|+ ++.+..++ ..+..+
T Consensus 15 l~~~~~~l~~ip~~~~------~~l~~L~L~~n~i~~----ip~~~~~l~~L~~L~Ls-------~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP------RDVTELYLDGNQFTL----VPKELSNYKHLTLIDLS-------NNRISTLSNQSFSNM 77 (193)
T ss_dssp EECTTSCCSSCCSCCC------TTCCEEECCSSCCCS----CCGGGGGCTTCCEEECC-------SSCCCCCCTTTTTTC
T ss_pred EEcCCCCCCcCCCCCC------CCCCEEECCCCcCch----hHHHhhcccCCCEEECC-------CCcCCEeCHhHccCC
Confidence 4444455555665443 589999999998864 55678999999999998 66676665 458899
Q ss_pred CCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCccc
Q 046115 413 LHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 413 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~ 474 (505)
++|++|+|++|. ++.+|+ .+..+++|+.|+|++|. +..+|.. +..+++|++|++++|...
T Consensus 78 ~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999999 666654 68999999999999999 7788774 788999999999999854
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=9.9e-11 Score=119.98 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCcceeeccCCccccccchhhh
Q 046115 356 RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHLKYLNLKGQKKIEKLPETLC 434 (505)
Q Consensus 356 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 434 (505)
++|+.|++++|.+... .|..+..+++|++|+|+ ++.+..+ |..++.+++|++|++++|. ++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISEL---WTSDILSLSKLRILIIS-------HNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECC-------SSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--
T ss_pred ccccEEECCCCccccc---ChhhccccccccEEecC-------CCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--
Confidence 5566666666655433 34445566666666665 3333333 4455566666666666665 5555554
Q ss_pred cCCCCcEEecCCCcCcc-ccchhccccccCceeecCCCc
Q 046115 435 ELYNLERLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 435 ~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~ 472 (505)
.+++|++|++++|.... .+|..++.+++|++|++++|.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 55666666666665222 245556666666666666655
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.15 E-value=9.6e-11 Score=115.41 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-c
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-T 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~ 407 (505)
..++.+.+..+....+|... +..+++|++|++.+|.+... .+..+..+.+|++|+++ ++.+..+| .
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~---~~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAAL---LDSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMG-------FNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHH---HHHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhH---hcccccCcEEECCCCccccc---ChhhccCCCCcCEEECC-------CCCCCcCCHH
Confidence 46777888777777666543 23678899999999887653 45567888899999998 55566654 4
Q ss_pred cccCCCCcceeeccCCccccccchhh-hcCCCCcEEecCCCcCcccc-chhccccccCceeecCCCcccccccccccCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPETL-CELYNLERLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
.++.+++|++|++++|. +..+|..+ +.+++|++|++++|. +..+ |..+..+++|++|++++|... .++ +..++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-ccc--ccccc
Confidence 47888999999999988 77888764 788999999999988 5555 445888899999999988743 332 33444
Q ss_pred cCCcc
Q 046115 486 RLRRV 490 (505)
Q Consensus 486 ~L~~L 490 (505)
+|+.|
T Consensus 187 ~L~~L 191 (390)
T 3o6n_A 187 SLFHA 191 (390)
T ss_dssp TCSEE
T ss_pred cccee
Confidence 44433
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=7.4e-11 Score=102.25 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=104.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCC-CceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLR-GLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.+..+....++. +..+. +|+.|++++|.+++. ..+..+++|++|+++ ++.+..+|+.
T Consensus 20 ~L~~L~l~~n~l~~i~~-----~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls-------~N~l~~~~~~ 82 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVN-------NNRICRIGEG 82 (176)
T ss_dssp SCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECC-------SSCCCEECSC
T ss_pred CceEEEeeCCCCchhHH-----hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECC-------CCcccccCcc
Confidence 56777777776665532 22444 999999999998764 247889999999999 7778888866
Q ss_pred c-cCCCCcceeeccCCccccccch--hhhcCCCCcEEecCCCcCccccchh----ccccccCceeecCCCcc
Q 046115 409 I-EKLLHLKYLNLKGQKKIEKLPE--TLCELYNLERLNVDDCQNLRELPRG----IGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 409 ~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~ 473 (505)
+ +.+++|++|++++|. ++.+|. .+..+++|+.|++++|+ +..+|.. ++.+++|+.|++++|..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5 899999999999999 788887 78999999999999999 7788885 89999999999999873
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=1.3e-10 Score=110.79 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=73.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCC-----CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGL-----RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE 404 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 404 (505)
.+..+.+..+....+|..+ ..+ ++|++|++++|.+... .|..+..+++|+.|+++ ++...+.
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~----~~l~~~~~~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls------~N~l~~~ 188 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWL----AELQQWLKPGLKVLSIAQAHSLNF---SCEQVRVFPALSTLDLS------DNPELGE 188 (312)
T ss_dssp CCSEEEEESCBCSSSSSHH----HHHHTTCCTTCCEEEEESCSCCCC---CTTTCCCCSSCCEEECC------SCTTCHH
T ss_pred CccEEEccCCCCcchhHHH----HHHHHhhcCCCcEEEeeCCCCccc---hHHHhccCCCCCEEECC------CCCcCcc
Confidence 4555555555554432211 122 5666666666655443 33445566666666665 1222222
Q ss_pred --cCccc--cCCCCcceeeccCCcccccc---chhh-hcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccc
Q 046115 405 --IPTNI--EKLLHLKYLNLKGQKKIEKL---PETL-CELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLR 475 (505)
Q Consensus 405 --~p~~~--~~l~~L~~L~l~~~~~~~~l---p~~~-~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~ 475 (505)
+|..+ +.+++|++|++++|. ++.+ +..+ ..+++|+.|++++|......| ..+..+++|++|++++|. +.
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 266 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LK 266 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CS
T ss_pred hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cC
Confidence 22233 556666666666666 4422 2222 355666666666666222232 234455666666666665 33
Q ss_pred cccccccCCccCCccc
Q 046115 476 YLPAGIGELIRLRRVR 491 (505)
Q Consensus 476 ~~p~~i~~l~~L~~L~ 491 (505)
.+|..+. ++|+.|+
T Consensus 267 ~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLD 280 (312)
T ss_dssp SCCSSCC--SEEEEEE
T ss_pred hhhhhcc--CCceEEE
Confidence 5555544 4444443
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=9.4e-11 Score=111.70 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=113.2
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHh--hcCcccceEEecccccCCccccccccC
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLF--EKLTCLRALELQVRESWPRNNLIKEIP 406 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~p 406 (505)
..+..+.+..+....++. ..+..+++|+.|++++|.+.+... .|..+ ..+++|+.|+++ ++.+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~L~-------~N~l~~~~ 217 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC---EQVRVFPALSTLDLSDNPELGERG-LISALCPLKFPTLQVLALR-------NAGMETPS 217 (312)
T ss_dssp TTCCEEEEESCSCCCCCT---TTCCCCSSCCEEECCSCTTCHHHH-HHHHSCTTSCTTCCEEECT-------TSCCCCHH
T ss_pred CCCcEEEeeCCCCccchH---HHhccCCCCCEEECCCCCcCcchH-HHHHHHhccCCCCCEEECC-------CCcCcchH
Confidence 377888888887765553 345689999999999998765322 23334 789999999998 56666433
Q ss_pred ---cc-ccCCCCcceeeccCCccccccc--hhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccc
Q 046115 407 ---TN-IEKLLHLKYLNLKGQKKIEKLP--ETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG 480 (505)
Q Consensus 407 ---~~-~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 480 (505)
.. +..+++|++|++++|. +...+ ..+..+++|+.|++++|. +..+|..+. ++|++|++++|. +..+|.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~- 291 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS- 291 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-
T ss_pred HHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-
Confidence 22 3578999999999999 55433 345678999999999999 779998876 899999999998 455676
Q ss_pred ccCCccCCcccee
Q 046115 481 IGELIRLRRVREF 493 (505)
Q Consensus 481 i~~l~~L~~L~~~ 493 (505)
+..+++|+.|++.
T Consensus 292 ~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 292 PDELPQVGNLSLK 304 (312)
T ss_dssp TTTSCEEEEEECT
T ss_pred HhhCCCCCEEecc
Confidence 8888888877653
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.14 E-value=1.2e-10 Score=114.84 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=107.4
Q ss_pred CCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccc-h
Q 046115 354 GLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLP-E 431 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp-~ 431 (505)
.+.+++.|.+.++.+... .+..+..+++|++|+++ ++.+..+| ..++.+++|++|++++|. +..+| .
T Consensus 43 ~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCchhhC---ChhHhcccccCcEEECC-------CCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 468999999999987654 45557889999999998 66666665 478999999999999999 66664 5
Q ss_pred hhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 432 TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
.++.+++|+.|++++|. +..+|.. +..+++|++|++++|......|..+..+++|+.|++.
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 57999999999999998 7889887 5899999999999998665556668999999988765
No 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.1e-12 Score=116.35 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=110.5
Q ss_pred CCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc
Q 046115 351 NVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 351 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
.+..+++|++|++++|.++. +| .+..+++|+.|+++ ++.+..+|..++.+++|++|++++|. ++.+|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~-------~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK----IS-SLSGMENLRILSLG-------RNLIKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEE-------EEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred HHhcCCCCCEEECCCCCCcc----cc-ccccCCCCCEEECC-------CCCcccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 34489999999999998876 45 58889999999999 77788889888888999999999998 77888
Q ss_pred hhhhcCCCCcEEecCCCcCccccch--hccccccCceeecCCCccccccccc----------ccCCccCCccceeEecC
Q 046115 431 ETLCELYNLERLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPAG----------IGELIRLRRVREFVVGG 497 (505)
Q Consensus 431 ~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~~~~~~~ 497 (505)
.+..+++|+.|++++|. +..+|. .+..+++|++|++++|...+..|.. +..+++|+.|+...+..
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~ 186 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence 49999999999999998 777765 6899999999999999866555542 78889999888544433
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=1.5e-10 Score=122.86 Aligned_cols=151 Identities=22% Similarity=0.192 Sum_probs=119.4
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT- 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~- 407 (505)
..++.+.+..+....++.. .|.++++|++|++.+|.++.. .|..+.++++|++|+|+ ++.+..+|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQ-------HNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCccCcc---CHHHHhcccCcCEEECC-------CCccCccChh
Confidence 4788888888877665543 355889999999999987764 67778999999999998 667777876
Q ss_pred cccCCCCcceeeccCCccccccc-hhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccccc--CC
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLP-ETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIG--EL 484 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~--~l 484 (505)
.++.+++|++|++++|. +..+| ..++.+++|++|++++|......|..++++++|++|++++|...+..|..+. .+
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 58899999999999998 66665 5689999999999999985555566788999999999999985444444343 45
Q ss_pred ccCCcccee
Q 046115 485 IRLRRVREF 493 (505)
Q Consensus 485 ~~L~~L~~~ 493 (505)
++|+.|++.
T Consensus 171 ~~L~~L~L~ 179 (680)
T 1ziw_A 171 SSLKKLELS 179 (680)
T ss_dssp CEESEEECT
T ss_pred ccccEEECC
Confidence 777777653
No 96
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=3.4e-09 Score=104.22 Aligned_cols=289 Identities=14% Similarity=0.054 Sum_probs=169.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc--CCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV--AGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~Ll 77 (505)
++|+|||+||+.+++ ...... ..++|+++....+...+...++..++...........+..+.+...+ .+++.+|
T Consensus 52 ~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 129 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL 129 (389)
T ss_dssp CTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 479999999999998 444432 35668888888888899999999887543333334555555555544 3568999
Q ss_pred EEeCCCCCCccChhHHHHhhcCCC----CCcEEEEEeCchHHHHHhC-------CcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 78 VLDDVWNEDYYKWEPFYKCLKNSL----HESKILITTRKETVARIMG-------STHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 78 vlDdv~~~~~~~~~~~~~~~~~~~----~~~~iLiTtr~~~~~~~~~-------~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
|+|+++..+......+...+.... .+..+|++|+......... ....+.+++++.++..+++.......
T Consensus 130 ilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~ 209 (389)
T 1fnn_A 130 VLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 209 (389)
T ss_dssp EEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred EEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh
Confidence 999997765444555555553321 4677888887764332211 12369999999999999998765320
Q ss_pred CCCCCCchHHHHHHHHHHHc---------CCChHHHHHHHHHhc------cC--CCHHHHHHHHhhhhhhhhhcccCchh
Q 046115 147 KTIGKRENLEKIGREIVKKC---------KGLPLAAKTIASLLR------SK--NTEKEWQNILENEIWELEAIEKGLLA 209 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~------~~--~~~~~~~~~l~~~~~~l~~~~~~~~~ 209 (505)
.. ...-.++++..+++.+ +|.|..+..+..... +. -+.+.....+... ...
T Consensus 210 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~ 277 (389)
T 1fnn_A 210 LA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV----------LFG 277 (389)
T ss_dssp BC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----------SCC
T ss_pred cC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----------hhh
Confidence 00 0112346678888888 788754443333211 11 1333333322211 112
Q ss_pred hHhhccccCChhhhhhhhhhccCC---CCCCCChHHHHHHHHH----cCCCCCCCCCCHHHHHHHHHHHHHHcccccccc
Q 046115 210 PLLLSYNELPSKVKRCFSYCAVFP---KDYGIRKHKLIELWMA----QGYLSEKGAKEMEDIGEEYFNILASRSFFQDFN 282 (505)
Q Consensus 210 ~l~~s~~~L~~~~~~~ll~la~f~---~~~~i~~~~l~~~w~~----~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~ 282 (505)
.+...+..|+...+.++..++.+. .+..+....+...+.. .+.. ......+.++++.|...+++....
T Consensus 278 ~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 278 ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEee
Confidence 233446677788888887777653 2213444454443322 1111 112355778899999999998755
Q ss_pred c----CCCCCeeEe----eehHHHHHHHHHhhcc
Q 046115 283 K----YDDGEIYKC----KMHDIVHDFAQYLCSN 308 (505)
Q Consensus 283 ~----~~~~~~~~~----~~H~lv~~~~~~~~~~ 308 (505)
. +..++...+ ..|++...+...+..+
T Consensus 353 ~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 353 NKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp C---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 4 212322222 2567777666555443
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=9.8e-11 Score=108.52 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=102.5
Q ss_pred CCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchh
Q 046115 353 TGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPET 432 (505)
Q Consensus 353 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~ 432 (505)
..+++|+.|++++|.++. ++ .+..+++|+.|+|+ ++.+..+|+ ++.+++|++|++++|. ++.+|.
T Consensus 38 ~~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~L~-------~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~- 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS----LA-GMQFFTNLKELHLS-------HNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG- 102 (263)
T ss_dssp HHHTTCSEEECTTSCCCC----CT-TGGGCTTCCEEECC-------SSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-
T ss_pred hhcCcCcEEECcCCCccc----ch-HHhhCCCCCEEECC-------CCccCCChh-hccCCCCCEEECCCCc-cCCcCc-
Confidence 378999999999998875 34 37889999999999 777888877 9999999999999999 888887
Q ss_pred hhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 433 LCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 433 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
+.. ++|+.|++++|. +..+| .+..+++|++|++++|. +..+| .+..+++|+.|++.
T Consensus 103 ~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLH 158 (263)
T ss_dssp CCC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECT
T ss_pred ccc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECC
Confidence 444 999999999998 77776 68999999999999998 45565 68888888877653
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.13 E-value=2.8e-10 Score=109.35 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=107.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc---ccC
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK---EIP 406 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~p 406 (505)
.+..+.+..+....+|..+. ++|+.|.+.+|.+... .+..+..+.+|+.|+++ ++.+. ..+
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~------~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~ 164 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP------KTLQELRVHENEITKV---RKSVFNGLNQMIVVELG-------TNPLKSSGIEN 164 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC------TTCCEEECCSSCCCBB---CHHHHTTCTTCCEEECC-------SSCCCGGGBCT
T ss_pred CCCEEECCCCcCCccChhhc------ccccEEECCCCccccc---CHhHhcCCccccEEECC-------CCcCCccCcCh
Confidence 55666666666555544332 5777777777776543 56668888999999998 44443 456
Q ss_pred ccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCcc
Q 046115 407 TNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 407 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
..+..+++|++|++++|. ++.+|..+. ++|+.|++++|......|..+..+++|++|++++|......|..+..+++
T Consensus 165 ~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp TGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred hhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 678889999999999998 778887554 78999999999844444677899999999999999855544557888888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 242 L~~L~L~ 248 (330)
T 1xku_A 242 LRELHLN 248 (330)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 8887764
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=1.3e-10 Score=121.06 Aligned_cols=146 Identities=13% Similarity=0.114 Sum_probs=109.5
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT- 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~- 407 (505)
..++.+.+..+....+|..+ +..+++|++|++.+|.+++. .|..+..+++|++|+|+ ++.+..+|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~---~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAAL---LDSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMG-------FNAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHH---HHHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHH---HccCCCCcEEECCCCCCCCC---ChHHhcCCCCCCEEECC-------CCcCCCCCHH
Confidence 35666777766666666543 34688999999999987754 55568899999999998 555666654
Q ss_pred cccCCCCcceeeccCCccccccchhh-hcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCcc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPETL-CELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
.++.+++|++|+|++|. ++.+|..+ +.+++|+.|+|++|......|..++.+++|++|++++|... .+| ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhh
Confidence 46899999999999998 77888764 89999999999999844444556899999999999999744 343 444555
Q ss_pred CCccc
Q 046115 487 LRRVR 491 (505)
Q Consensus 487 L~~L~ 491 (505)
|+.|+
T Consensus 194 L~~L~ 198 (597)
T 3oja_B 194 LFHAN 198 (597)
T ss_dssp CSEEE
T ss_pred hhhhh
Confidence 55544
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.6e-10 Score=100.29 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=97.2
Q ss_pred eEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccc-hhhhcCC
Q 046115 359 RSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLP-ETLCELY 437 (505)
Q Consensus 359 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 437 (505)
+++.+.++.+.. +|..+ ..+|+.|+++ ++.+..+|..+..+++|++|++++|. ++.++ ..+..++
T Consensus 13 ~~l~~~~~~l~~----ip~~~--~~~l~~L~L~-------~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKV----LPKGI--PRDVTELYLD-------GNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSS----CCSCC--CTTCCEEECC-------SSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCc----CCCCC--CCCCCEEECC-------CCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 578888887765 34322 3589999998 77788999999999999999999999 66665 4689999
Q ss_pred CCcEEecCCCcCccccch-hccccccCceeecCCCcccccccc-cccCCccCCcccee
Q 046115 438 NLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREF 493 (505)
Q Consensus 438 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 493 (505)
+|+.|+|++|. +..+|+ .+..+++|++|++++|. +..+|. .|..+++|+.|++.
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeC
Confidence 99999999999 666665 68999999999999998 456665 47888888887653
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.13 E-value=4.1e-09 Score=103.46 Aligned_cols=263 Identities=10% Similarity=-0.009 Sum_probs=153.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC------CCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc--CC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN------FEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV--AG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~ 72 (505)
++|+|||++|+.+++ ..... -...+|+++....+...++..++.+++...........+....+...+ .+
T Consensus 52 ~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 129 (387)
T 2v1u_A 52 LTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLR 129 (387)
T ss_dssp CTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 589999999999998 44322 124568888888888999999999997544444444555566666666 34
Q ss_pred ceEEEEEeCCCCCCcc--ChhHH---HHhhcCC--CCCcEEEEEeCchHHH----HH-hCCc--ceEeCCCCChhhHHHH
Q 046115 73 KKFLLVLDDVWNEDYY--KWEPF---YKCLKNS--LHESKILITTRKETVA----RI-MGST--HVISVNVLSEMECWSV 138 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~--~~~~~---~~~~~~~--~~~~~iLiTtr~~~~~----~~-~~~~--~~~~l~~l~~~ea~~L 138 (505)
++.+||+|+++..... ..+.+ ....... ..+..+|.||+..... .. .... ..+.+++++.++..++
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 6899999999663221 11222 2222221 4456777777765211 11 1122 4788999999999999
Q ss_pred HHHhhhC--CCCCCCCchHHHHHHHHHHHcC---CChH-HHHHHHHHh---c--c-C-CCHHHHHHHHhhhhhhhhhccc
Q 046115 139 FQSLAIS--GKTIGKRENLEKIGREIVKKCK---GLPL-AAKTIASLL---R--S-K-NTEKEWQNILENEIWELEAIEK 205 (505)
Q Consensus 139 f~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l---~--~-~-~~~~~~~~~l~~~~~~l~~~~~ 205 (505)
+...... ... ..+ ++++..+++.++ |.|. ++.++.... . + . -+.+.+...++...
T Consensus 210 l~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------- 277 (387)
T 2v1u_A 210 LETRAEEAFNPG-VLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------- 277 (387)
T ss_dssp HHHHHHHHBCTT-TBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--------
T ss_pred HHHHHHhhccCC-CCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--------
Confidence 9876431 111 111 234667777777 9993 333322221 1 1 1 15555555554321
Q ss_pred CchhhHhhccccCChhhhhhhhhhcc-CCCCCCCChHHHHHHHHH--cCCCCCCCCCCHHHHHHHHHHHHHHcccccccc
Q 046115 206 GLLAPLLLSYNELPSKVKRCFSYCAV-FPKDYGIRKHKLIELWMA--QGYLSEKGAKEMEDIGEEYFNILASRSFFQDFN 282 (505)
Q Consensus 206 ~~~~~l~~s~~~L~~~~~~~ll~la~-f~~~~~i~~~~l~~~w~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~ 282 (505)
...+..++..+++..+.++..++. +.....+....+...... +... ........+.++++.|...|++....
T Consensus 278 --~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 278 --RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG---LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT---CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred --hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 113455677888888888877773 322223434433222211 1110 11223456778899999999998754
No 102
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.13 E-value=1.4e-10 Score=116.80 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=111.0
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Cc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PT 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~ 407 (505)
..++.+.+..+....++ +..+.++++|++|++.+|.+.+. ..+..+..+++|++|+|+ ++.+... |.
T Consensus 30 ~~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~n~~~~~--i~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN---ETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLD-------YNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCCEEC---TTTTSSCTTCCEEECCCCSTTCE--ECTTTTTTCTTCCEEECT-------TCTTCEECTT
T ss_pred CccCEEEecCCccCcCC---hhHhccCccccEEECcCCcccce--ECcccccccccCCEEeCC-------CCccCccChh
Confidence 37888888887766543 34566899999999999987532 135568889999999998 5555544 77
Q ss_pred cccCCCCcceeeccCCccccccchh--hhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCcccccccccccCC
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPET--LCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGEL 484 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~i~~l 484 (505)
.++.+++|++|++++|...+.+|.. +..+++|+.|++++|......|.. +..+++|++|++++|...+..|..+..+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8999999999999999944445555 889999999999999944444665 7899999999999998666666656544
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=126.10 Aligned_cols=153 Identities=21% Similarity=0.154 Sum_probs=120.3
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPT 407 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~ 407 (505)
..++.+.++.+....+. +..|.++++|++|++++|..... ..|..+.++++|++|+|+ ++.+.. .|.
T Consensus 24 ~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~--i~~~~f~~L~~L~~L~Ls-------~N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLT--IDKEAFRNLPNLRILDLG-------SSKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCE--ECTTTTSSCTTCCEEECT-------TCCCCEECTT
T ss_pred CCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccc--cCHHHhcCCCCCCEEECC-------CCcCcccCHh
Confidence 37889999888776543 34566999999999999964332 136778999999999998 555555 478
Q ss_pred cccCCCCcceeeccCCccccccchh--hhcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccccccccccCC
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPET--LCELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 484 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l 484 (505)
.++.+++|++|+|++|.....+|.. ++.+++|+.|++++|......| ..++++++|++|++++|...+..|..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8999999999999999954556665 8899999999999998444333 468999999999999998777777777776
Q ss_pred --ccCCcccee
Q 046115 485 --IRLRRVREF 493 (505)
Q Consensus 485 --~~L~~L~~~ 493 (505)
++|+.|++.
T Consensus 172 ~~~~L~~L~L~ 182 (844)
T 3j0a_A 172 QGKTLSFFSLA 182 (844)
T ss_dssp HHCSSCCCEEC
T ss_pred cCCccceEECC
Confidence 778777764
No 104
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.12 E-value=1.8e-10 Score=115.93 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=74.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Ccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~ 408 (505)
.+..+.+..+..... .+..+..+++|+.|++++|.+... .|..+..+++|++|+|+ ++.+..+ |..
T Consensus 276 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 342 (455)
T 3v47_A 276 GVKTCDLSKSKIFAL---LKSVFSHFTDLEQLTLAQNEINKI---DDNAFWGLTHLLKLNLS-------QNFLGSIDSRM 342 (455)
T ss_dssp CCCEEECCSSCCCEE---CTTTTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECC-------SSCCCEECGGG
T ss_pred CceEEEecCcccccc---chhhcccCCCCCEEECCCCccccc---ChhHhcCcccCCEEECC-------CCccCCcChhH
Confidence 344444444443322 223344566666666666665543 44445666666666666 3334443 444
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchh-ccccccCceeecCCCccccccc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLP 478 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p 478 (505)
++.+++|++|++++|......|..+..+++|+.|++++|. +..+|.. +..+++|++|++++|+..+..|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5666666666666666322335556666666666666666 4555543 4566666666666666544444
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=3.2e-10 Score=109.71 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=108.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++. +..+++|+.|.+.+|.++.. +. +..+++|+.|+++ ++.+..++ .+
T Consensus 200 ~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~l~-------~n~l~~~~-~~ 261 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITDL----SP-LANLSQLTWLEIG-------TNQISDIN-AV 261 (347)
T ss_dssp TCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECC-------SSCCCCCG-GG
T ss_pred ccceeecccCCCCCCch-----hhcCCcCCEEEccCCccCCC----cc-hhcCCCCCEEECC-------CCccCCCh-hH
Confidence 45566665555544333 45788999999999987653 33 7888999999998 55566654 57
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
..+++|++|++++|. +..+|. +..+++|+.|++++|......|..+..+++|++|++++|... .+++ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-GGGCTTCSE
T ss_pred hcCCCcCEEEccCCc-cCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-hhhhhccce
Confidence 889999999999998 777765 889999999999999855556667889999999999999854 4444 778888888
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 338 L~l~ 341 (347)
T 4fmz_A 338 ADFA 341 (347)
T ss_dssp ESSS
T ss_pred eehh
Confidence 7754
No 106
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=9.6e-11 Score=121.49 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCCCCCceEEEecCCCccccccchh-HHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccc-ccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLP-QLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI-EKL 429 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~l 429 (505)
+..+++|+.|++.+|.+... .| ..+..+++|++|+++ ++......|..++.+++|++|++++|... ..+
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDIS------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EETCTTCCEEECTTSEEESC---TTSCTTTTCTTCCEEECT------TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccCCCCEEEccCCccccc---cchhhhhcCCCCCEEeCc------CCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 34667777777777665443 22 346677777777777 23333445666777888888888888733 357
Q ss_pred chhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCcccee
Q 046115 430 PETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 493 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 493 (505)
|..+..+++|+.|++++|......|..+..+++|++|++++|...+..|..+.++++|+.|++.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 7777888888888888887444446677888888888888887554444457777777776654
No 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=2.4e-10 Score=109.86 Aligned_cols=143 Identities=22% Similarity=0.287 Sum_probs=98.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.++.+.+..+....++. ..+.++++|++|++.+|.++.. .|..+..+++|++|+++ ++.+..+|..+
T Consensus 55 ~l~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~-------~n~l~~l~~~~ 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRK---DDFKGLQHLYALVLVNNKISKI---HEKAFSPLRKLQKLYIS-------KNHLVEIPPNL 121 (332)
T ss_dssp TCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEE---CGGGSTTCTTCCEEECC-------SSCCCSCCSSC
T ss_pred CCeEEECCCCcCCccCH---hHhhCCCCCcEEECCCCccCcc---CHhHhhCcCCCCEEECC-------CCcCCccCccc
Confidence 56667666666554432 3455778888888888876643 56667788888888887 66666777655
Q ss_pred cCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCc--cccchhccccccCceeecCCCcccccccccccCCcc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNL--RELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
. ++|++|++++|. ++.+|. .+..+++|+.|++++|... ...|..+..+ +|++|++++|. +..+|..+. ++
T Consensus 122 ~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~ 194 (332)
T 2ft3_A 122 P--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ET 194 (332)
T ss_dssp C--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SS
T ss_pred c--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CC
Confidence 4 788888888887 666655 4677888888888888732 1445556666 78888888887 445666543 46
Q ss_pred CCccce
Q 046115 487 LRRVRE 492 (505)
Q Consensus 487 L~~L~~ 492 (505)
|+.|++
T Consensus 195 L~~L~l 200 (332)
T 2ft3_A 195 LNELHL 200 (332)
T ss_dssp CSCCBC
T ss_pred CCEEEC
Confidence 666654
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.11 E-value=2.7e-10 Score=120.74 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=79.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-cc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~ 408 (505)
.++.+.+..+....++ +..+.++++|++|++++|.++.. .+..+..+++|++|+++ ++.+..+| ..
T Consensus 50 ~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 116 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLTELHLM-------SNSIQKIKNNP 116 (680)
T ss_dssp TCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECC-------SSCCCCCCSCT
T ss_pred cCcEEECCCCccCccC---HHHHhcccCcCEEECCCCccCcc---ChhhhccCCCCCEEECC-------CCccCccChhH
Confidence 4555555544433322 22233566666666666665432 23345666666666666 44444443 34
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccch-hc--cccccCceeecCCCcccccccccccCCc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPR-GI--GKLRKLMYLHNEDTGCLRYLPAGIGELI 485 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~--~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 485 (505)
++.+++|++|++++|...+..|..++++++|+.|++++|. +..+++ .+ ..+++|++|++++|...+..|..+..+.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence 6666666666666666333344455666666666666666 444433 22 2345666666666654444444555555
Q ss_pred cCCccc
Q 046115 486 RLRRVR 491 (505)
Q Consensus 486 ~L~~L~ 491 (505)
+|+.|.
T Consensus 196 ~L~~L~ 201 (680)
T 1ziw_A 196 RLFGLF 201 (680)
T ss_dssp EECEEE
T ss_pred hhhhhh
Confidence 555543
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=1.4e-08 Score=99.70 Aligned_cols=262 Identities=11% Similarity=0.020 Sum_probs=153.5
Q ss_pred CCCCcHHHHHHHHhcCcccccC--------CCceEEEEeCCCC-CHHHHHHHHHHHc-CCCCCCChhcHHHHHHHHHHHc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN--------FEKRTWVCVSEPF-DEFRIARAIIESL-TPGSAKDLVEFQSLMQHIEECV 70 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~--------f~~~~wv~~~~~~-~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l 70 (505)
++|+|||+||+.+++ +.... ....+|+++.... +...++..++.++ +................+...+
T Consensus 53 ~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 130 (384)
T 2qby_B 53 LTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT 130 (384)
T ss_dssp CTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Confidence 589999999999998 44222 2346688887766 8888888888887 3222222333455566777777
Q ss_pred CCceEEEEEeCCCCCCccChhHH-HHhhcCCCCCcEEEEEeCchHH----HHHh--CCcceEeCCCCChhhHHHHHHHhh
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPF-YKCLKNSLHESKILITTRKETV----ARIM--GSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~-~~~~~~~~~~~~iLiTtr~~~~----~~~~--~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
..++.+||+|+++.......... ...+.....+..+|+||+.... .... .-...+.+++++.++..+++...+
T Consensus 131 ~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 131 RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 76666999999966322111122 2233322267788889887521 1111 112389999999999999998875
Q ss_pred hC-CCCCCCCchHHHHHHHHHHHcC---CChH-HHHHHHHHh--c-c--CCCHHHHHHHHhhhhhhhhhcccCchhhHhh
Q 046115 144 IS-GKTIGKRENLEKIGREIVKKCK---GLPL-AAKTIASLL--R-S--KNTEKEWQNILENEIWELEAIEKGLLAPLLL 213 (505)
Q Consensus 144 ~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~-~--~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~ 213 (505)
.. ......+ ++++..+++.++ |.|. ++..+.... . + .-+.+.+...++... ...+..
T Consensus 211 ~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~ 277 (384)
T 2qby_B 211 EYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIE 277 (384)
T ss_dssp HHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHH
T ss_pred HhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHH
Confidence 31 1111111 345667777777 8886 444333322 1 1 125666666555421 123556
Q ss_pred ccccCChhhhhhhhhhccCCCCCCCChHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHccccccccc
Q 046115 214 SYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFNK 283 (505)
Q Consensus 214 s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~ 283 (505)
++..|++.++.++..++. ...-+-.........-..+. .......+.++++.|...|++.....
T Consensus 278 ~~~~l~~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 278 AVKALPFHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQ-----KPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHSSCHHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHcCCHHHHHHHHHHHH-hcccChHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 677888888888877776 21100001111121111121 12234567788999999999987543
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.10 E-value=3.4e-10 Score=122.84 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=97.3
Q ss_pred ceeEEEEEecCCCcccccc-ccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc-ccCc
Q 046115 330 KILHLLLTLRRGASVPISI-WGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK-EIPT 407 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~p~ 407 (505)
.++.+.+..+.. ...+ +..|.++++|++|++++|.++.. .|..+..+.+|++|+|+ ++.+. ..|.
T Consensus 49 ~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 115 (844)
T 3j0a_A 49 QLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFL---HPDAFQGLFHLFELRLY-------FCGLSDAVLK 115 (844)
T ss_dssp SCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEE---CTTSSCSCSSCCCEECT-------TCCCSSCCST
T ss_pred cCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCccc---CHhHccCCcccCEeeCc-------CCCCCccccc
Confidence 455555555422 1122 34456778888888888876644 56667778888888887 33333 3444
Q ss_pred c--ccCCCCcceeeccCCcccccc--chhhhcCCCCcEEecCCCcCccccchhcccc--ccCceeecCCCcccccccccc
Q 046115 408 N--IEKLLHLKYLNLKGQKKIEKL--PETLCELYNLERLNVDDCQNLRELPRGIGKL--RKLMYLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 408 ~--~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~~p~~i 481 (505)
. ++.+++|++|++++|. +..+ +..++++++|+.|++++|......|..+..+ ++|+.|++++|...+..|..+
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 3 6778888888888887 4333 2457788888888888877555566666666 778888888887666666666
Q ss_pred cCCcc------CCcccee
Q 046115 482 GELIR------LRRVREF 493 (505)
Q Consensus 482 ~~l~~------L~~L~~~ 493 (505)
+.+.+ |+.|++-
T Consensus 195 ~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CSSSCTTTTCCBSEEBCS
T ss_pred hhcCCccccCceeEEecC
Confidence 65554 6666553
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=1e-10 Score=111.30 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=87.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccch-hHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVL-PQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.+..+....++ +..+..+++|++|++++|.+.+..... +..+..+++|++|+|+ ++.+..+|..
T Consensus 146 ~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~ 215 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFS---CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-------NTGMETPTGV 215 (310)
T ss_dssp CCCEEEEECCSSCCCC---TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-------SSCCCCHHHH
T ss_pred CCCEEEeeCCCcchhh---HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-------CCCCCchHHH
Confidence 5556666665554333 233446677777777777654321101 1123466677777776 4555444432
Q ss_pred ----ccCCCCcceeeccCCccccccchhhhcC---CCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccc
Q 046115 409 ----IEKLLHLKYLNLKGQKKIEKLPETLCEL---YNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 409 ----~~~l~~L~~L~l~~~~~~~~lp~~~~~l---~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i 481 (505)
++.+++|++|++++|......|..+..+ ++|+.|++++|. +..+|..+. ++|++|++++|. +..+|. +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCC-CCSCCC-T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCc-CCCCch-h
Confidence 3566777777777777333336656555 577777777777 567777654 677777777776 334443 5
Q ss_pred cCCccCCccce
Q 046115 482 GELIRLRRVRE 492 (505)
Q Consensus 482 ~~l~~L~~L~~ 492 (505)
..+++|+.|++
T Consensus 291 ~~l~~L~~L~L 301 (310)
T 4glp_A 291 DELPEVDNLTL 301 (310)
T ss_dssp TSCCCCSCEEC
T ss_pred hhCCCccEEEC
Confidence 66666666654
No 112
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=2.2e-10 Score=110.15 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=76.5
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEeccccc--CC----------
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRES--WP---------- 397 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~---------- 397 (505)
.+..+.+..+....++.. .+..+++|+.|++.+|.+.... ..+..+..+ +|+.|+++++.. .+
T Consensus 124 ~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L 198 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKG---VFSGLRNMNCIEMGGNPLENSG-FEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL 198 (332)
T ss_dssp TCCEEECCSSCCCCCCSG---GGSSCSSCCEEECCSCCCBGGG-SCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCC
T ss_pred cCCEEECCCCccCccCHh---HhCCCccCCEEECCCCccccCC-CCcccccCC-ccCEEECcCCCCCccCccccCCCCEE
Confidence 556666666555544432 2346677777777777664211 123333333 444444431100 00
Q ss_pred --ccccccccC-ccccCCCCcceeeccCCccccccc-hhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcc
Q 046115 398 --RNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLP-ETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 398 --~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 473 (505)
.++.+...+ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++|. +..+|..+..+++|++|++++|..
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCC
Confidence 033333333 456667777777777776 44443 356677777777777776 667777777777777777777763
No 113
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=3.9e-10 Score=117.89 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=73.5
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccC---C---------
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESW---P--------- 397 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~--------- 397 (505)
.+..+.+..+....+|.. +..+++|++|.+.+|.+... .|..+..+++|+.|+++++... +
T Consensus 279 ~L~~L~l~~n~l~~lp~~----l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSG----LVGLSTLKKLVLSANKFENL---CQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TCSEEECTTSCCSCCCSS----CCSCTTCCEEECTTCCCSBG---GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred CCCEEeccCCccCCCChh----hcccccCCEEECccCCcCcC---chhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 455555555555544433 34667777777777765543 3444555666666666521000 0
Q ss_pred ------cccccccc---CccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchh-ccccccCceee
Q 046115 398 ------RNNLIKEI---PTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRG-IGKLRKLMYLH 467 (505)
Q Consensus 398 ------~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 467 (505)
.++.+... |..++.+++|++|++++|......|..++.+++|+.|++++|......|.. +..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 01111111 233444445555555544422222334445555555555555422222222 45555555555
Q ss_pred cCCCcccccccccccCCccCCccce
Q 046115 468 NEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 468 l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
+++|......|..+..+++|+.|++
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEEC
Confidence 5555544444444555555555544
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.09 E-value=2.6e-10 Score=118.02 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=74.0
Q ss_pred eEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-Ccccc
Q 046115 332 LHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIE 410 (505)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~ 410 (505)
+.+....+....+|..++ ++|+.|++++|.++.. .|..+..+++|++|+|+ ++.+..+ |..++
T Consensus 34 ~~l~ls~~~L~~ip~~~~------~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~~ 97 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP------PRTKALSLSQNSISEL---RMPDISFLSELRVLRLS-------HNRIRSLDFHVFL 97 (562)
T ss_dssp CEEECTTSCCCSCCTTSC------TTCCEEECCSSCCCCC---CGGGTTTCTTCCEEECC-------SCCCCEECTTTTT
T ss_pred cEEEcCCCCCccCCCCCC------CCcCEEECCCCCcccc---ChhhhccCCCccEEECC-------CCCCCcCCHHHhC
Confidence 444444444454444332 5667777777766543 44456667777777776 4444444 44566
Q ss_pred CCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCcccc--chhccccccCceeecCCCcc
Q 046115 411 KLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLREL--PRGIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~ 473 (505)
.+++|++|++++|. ++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|..
T Consensus 98 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 98 FNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc
Confidence 67777777777776 5666664 66777777777766 4443 35666677777777776653
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=4.5e-10 Score=108.70 Aligned_cols=143 Identities=19% Similarity=0.243 Sum_probs=110.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++. +..+++|+.|.+.+|.+... +. +..+++|+.|+++ ++.+..+|. +
T Consensus 178 ~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~----~~-~~~~~~L~~L~l~-------~n~l~~~~~-~ 239 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITDI----TP-VANMTRLNSLKIG-------NNKITDLSP-L 239 (347)
T ss_dssp TCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCC----GG-GGGCTTCCEEECC-------SSCCCCCGG-G
T ss_pred CCCEEEccCCccccccc-----ccCCCccceeecccCCCCCC----ch-hhcCCcCCEEEcc-------CCccCCCcc-h
Confidence 45666666555554433 44778888888888876653 22 6788899999998 666777766 8
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
..+++|++|++++|. ++.++. +..+++|+.|++++|. +..+| .+..+++|++|++++|...+..|..+..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQ-ISDINA-VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCc-cCCChh-HhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 889999999999998 777754 8899999999999997 66664 5788999999999999876666777888888888
Q ss_pred cceeE
Q 046115 490 VREFV 494 (505)
Q Consensus 490 L~~~~ 494 (505)
|++..
T Consensus 316 L~L~~ 320 (347)
T 4fmz_A 316 LFLSQ 320 (347)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 87653
No 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.08 E-value=3.3e-10 Score=118.45 Aligned_cols=147 Identities=16% Similarity=0.086 Sum_probs=115.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~ 408 (505)
.++.+.+..+....++ +..|.++++|++|++++|.+... .|..|..+.+|++|+|+ ++.+.. .|..
T Consensus 34 ~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~ 100 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQ---NTTFSRLINLTFLDLTRCQIYWI---HEDTFQSQHRLDTLVLT-------ANPLIFMAETA 100 (606)
T ss_dssp TCCEEECTTCCCSEEC---TTTSTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECT-------TCCCSEECTTT
T ss_pred cCcEEEccCCccCcCC---hhHhccCccceEEECCCCcccee---ChhhccCccccCeeeCC-------CCcccccChhh
Confidence 6788888877776553 34566899999999999987654 67778999999999998 554544 4778
Q ss_pred ccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccc-hhccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
++.+++|++|++++|. +..+ |..++.+++|++|++++|. +..++ +.+..+++|++|++++|......|..++.+++
T Consensus 101 ~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 8999999999999999 6665 5678999999999999998 55542 34445899999999999866555667888888
Q ss_pred CCccc
Q 046115 487 LRRVR 491 (505)
Q Consensus 487 L~~L~ 491 (505)
|+.+.
T Consensus 179 L~~l~ 183 (606)
T 3t6q_A 179 ATNLS 183 (606)
T ss_dssp CCSEE
T ss_pred cceeE
Confidence 88443
No 117
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=6.1e-10 Score=105.95 Aligned_cols=150 Identities=16% Similarity=0.077 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCccccccc-cCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccc-cc--
Q 046115 329 KKILHLLLTLRRGASVPISIW-GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLI-KE-- 404 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-- 404 (505)
..+..+.+..+.......... ..+..+++|++|.+++|.+... .+..+..+++|++|+|+ ++.+ +.
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls-------~N~l~~~~~ 186 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF---SCEQVRAFPALTSLDLS-------DNPGLGERG 186 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC---CTTSCCCCTTCCEEECC-------SCTTCHHHH
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh---hHHHhccCCCCCEEECC-------CCCCccchh
Confidence 356677777776553221111 2233688899999998887654 55667788889999998 4432 21
Q ss_pred cC--ccccCCCCcceeeccCCccccccchh----hhcCCCCcEEecCCCcCccccchhcccc---ccCceeecCCCcccc
Q 046115 405 IP--TNIEKLLHLKYLNLKGQKKIEKLPET----LCELYNLERLNVDDCQNLRELPRGIGKL---RKLMYLHNEDTGCLR 475 (505)
Q Consensus 405 ~p--~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~~~lp~~~~~l---~~L~~L~l~~~~~~~ 475 (505)
++ ..++.+++|++|++++|. ++.+|.. ++.+++|+.|++++|......|..+..+ ++|++|++++|. +.
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~ 264 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LE 264 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CC
T ss_pred hhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CC
Confidence 32 223678889999999988 6666552 4678899999999988444457777666 689999999987 44
Q ss_pred cccccccCCccCCccce
Q 046115 476 YLPAGIGELIRLRRVRE 492 (505)
Q Consensus 476 ~~p~~i~~l~~L~~L~~ 492 (505)
.+|..+. ++|+.|++
T Consensus 265 ~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 265 QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp SCCSCCC--SCCSCEEC
T ss_pred chhhhhc--CCCCEEEC
Confidence 7787764 56666664
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=9.2e-10 Score=110.48 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=94.1
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.++.+.+..+....++ +..+++|+.|++++|.+++. + +..+++|++|+++ ++.+..+| +
T Consensus 65 ~L~~L~Ls~n~l~~~~------~~~l~~L~~L~Ls~N~l~~~----~--~~~l~~L~~L~L~-------~N~l~~l~--~ 123 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD------LSQNTNLTYLACDSNKLTNL----D--VTPLTKLTYLNCD-------TNKLTKLD--V 123 (457)
T ss_dssp TCSEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCC----C--CTTCTTCCEEECC-------SSCCSCCC--C
T ss_pred CCCEEEccCCcCCeEc------cccCCCCCEEECcCCCCcee----e--cCCCCcCCEEECC-------CCcCCeec--C
Confidence 5666666666655442 44677788888887776653 2 6677778888887 55555554 6
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|. ++.++ ++.+++|+.|++++|..+..+ .++.+++|++|++++|. +..+| +..+++|+.
T Consensus 124 ~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~ 195 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNR 195 (457)
T ss_dssp TTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCE
T ss_pred CCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCE
Confidence 777888888888877 55553 777788888888888656666 36678888888888887 44455 677777776
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 196 L~l~ 199 (457)
T 3bz5_A 196 LNCD 199 (457)
T ss_dssp EECC
T ss_pred EECc
Confidence 6543
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=4.6e-12 Score=112.24 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=92.1
Q ss_pred hhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccc
Q 046115 375 LPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELP 454 (505)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 454 (505)
+|..+..+++|++|+++ ++.+..+| .++.+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-------~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-------EEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-------CCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 55579999999999999 66777788 89999999999999999 88999988888999999999998 77787
Q ss_pred hhccccccCceeecCCCcccccccc--cccCCccCCcccee
Q 046115 455 RGIGKLRKLMYLHNEDTGCLRYLPA--GIGELIRLRRVREF 493 (505)
Q Consensus 455 ~~~~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~ 493 (505)
.+..+++|++|++++|. +..+|. .+..+++|+.|++.
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 68899999999999997 455543 57888888887754
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=3.6e-10 Score=97.55 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=54.4
Q ss_pred eEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCcceeeccCCccccccchh-hhcC
Q 046115 359 RSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHLKYLNLKGQKKIEKLPET-LCEL 436 (505)
Q Consensus 359 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l 436 (505)
+.+++.++.+.. +|..+ ..+|+.|+|+ ++.+..+ |..++.+++|++|+|++|. ++.+|.. +..+
T Consensus 15 ~~l~~~~n~l~~----iP~~~--~~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLAS----VPAGI--PTDKQRLWLN-------NNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSS----CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCCCc----cCCCc--CCCCcEEEeC-------CCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 455555555433 22212 1456666665 4444444 3345566666666666665 5555543 3566
Q ss_pred CCCcEEecCCCcCccccchh-ccccccCceeecCCCc
Q 046115 437 YNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTG 472 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 472 (505)
++|+.|+|++|. +..+|+. +..+++|++|++++|.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 666666666665 5555554 5666666666666665
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.02 E-value=1.4e-10 Score=111.71 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCCCCCceEEEecCC-CccccccchhHHhhcCcccceEEecccccCCccc-cccc--cCccccCCC-CcceeeccCCc-c
Q 046115 352 VTGLRGLRSLLVKSD-EYSWSSEVLPQLFEKLTCLRALELQVRESWPRNN-LIKE--IPTNIEKLL-HLKYLNLKGQK-K 425 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~--~p~~~~~l~-~L~~L~l~~~~-~ 425 (505)
+..+++|++|.+.+| .++.. .++..+..+++|+.|+++ ++ .+.. ++..+..++ +|++|++++|. .
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~--~l~~~~~~~~~L~~L~l~-------~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEF--ALQTLLSSCSRLDELNLS-------WCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHH--HHHHHHHHCTTCCEEECC-------CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred HhcCCCCCEEECCCCCCCCHH--HHHHHHhcCCCCCEEcCC-------CCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 345666666666666 33321 145555666666666666 22 3332 344456666 67777777664 1
Q ss_pred c--cccchhhhcCCCCcEEecCCCcCc-cccchhccccccCceeecCCCcccccccc---cccCCccCCcccee
Q 046115 426 I--EKLPETLCELYNLERLNVDDCQNL-RELPRGIGKLRKLMYLHNEDTGCLRYLPA---GIGELIRLRRVREF 493 (505)
Q Consensus 426 ~--~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~---~i~~l~~L~~L~~~ 493 (505)
+ ..+|..+..+++|+.|++++|..+ ...+..+..+++|++|++++|. ...+. .+.++++|+.|++.
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEecc
Confidence 2 445555566677777777776622 3455566666777777777764 11222 35556666665544
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=1.9e-09 Score=108.72 Aligned_cols=139 Identities=22% Similarity=0.355 Sum_probs=76.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++. +..+++|+.|.+.+|.+++. +. +..+++|+.|+++ ++.+..+++ +
T Consensus 244 ~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~L~-------~n~l~~~~~-~ 305 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNI----SP-LAGLTALTNLELN-------ENQLEDISP-I 305 (466)
T ss_dssp TCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCC----GG-GTTCTTCSEEECC-------SSCCSCCGG-G
T ss_pred CCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcc----cc-ccCCCccCeEEcC-------CCcccCchh-h
Confidence 34444444444433322 33556666666666655442 22 5556666666665 444444443 5
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|. +..+++ ++.+++|+.|++++|. +..+| .+..+++|+.|++++|...+..| +..+++|+.
T Consensus 306 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 566666666666666 444444 5666666666666665 44443 45666666666666666443333 555555555
Q ss_pred cce
Q 046115 490 VRE 492 (505)
Q Consensus 490 L~~ 492 (505)
|++
T Consensus 380 L~l 382 (466)
T 1o6v_A 380 LGL 382 (466)
T ss_dssp EEC
T ss_pred Eec
Confidence 544
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.01 E-value=1e-10 Score=112.67 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=119.6
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccc--ccC
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIK--EIP 406 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~p 406 (505)
..+..+.+..+.... ..++..+..+++|++|.+.+|.++.. .+..+..+++|++|+++ ++..+. .+|
T Consensus 93 ~~L~~L~L~~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~L~------~~~~l~~~~l~ 161 (336)
T 2ast_B 93 FRVQHMDLSNSVIEV--STLHGILSQCSKLQNLSLEGLRLSDP---IVNTLAKNSNLVRLNLS------GCSGFSEFALQ 161 (336)
T ss_dssp BCCCEEECTTCEECH--HHHHHHHTTBCCCSEEECTTCBCCHH---HHHHHTTCTTCSEEECT------TCBSCCHHHHH
T ss_pred CCCCEEEccCCCcCH--HHHHHHHhhCCCCCEEeCcCcccCHH---HHHHHhcCCCCCEEECC------CCCCCCHHHHH
Confidence 356666666554321 11334456899999999999986543 67778889999999998 232444 366
Q ss_pred ccccCCCCcceeeccCCccccc--cchhhhcCC-CCcEEecCCCc-Cc--cccchhccccccCceeecCCCc-ccccccc
Q 046115 407 TNIEKLLHLKYLNLKGQKKIEK--LPETLCELY-NLERLNVDDCQ-NL--RELPRGIGKLRKLMYLHNEDTG-CLRYLPA 479 (505)
Q Consensus 407 ~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~-~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~-~~~~~p~ 479 (505)
..+..+++|++|++++|..++. ++..+..++ +|+.|++++|. .+ ..+|..+..+++|++|++++|. .....+.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 6688899999999999933653 677788999 99999999995 13 5678788899999999999998 4456777
Q ss_pred cccCCccCCccceeEec
Q 046115 480 GIGELIRLRRVREFVVG 496 (505)
Q Consensus 480 ~i~~l~~L~~L~~~~~~ 496 (505)
.+.++++|+.|++..+.
T Consensus 242 ~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGCTTCCEEECTTCT
T ss_pred HHhCCCCCCEeeCCCCC
Confidence 88999999999887654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=7.1e-10 Score=114.07 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=100.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.++.+.+..+....+|. +..+++|+.|++++|.++. +|..++.+++|+.|+|+ ++.+..+| .+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-----~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~Ls-------~N~l~~lp-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQAS-------DNALENVD-GV 504 (567)
T ss_dssp TCSEEECTTSCCSSCCC-----GGGGTTCCEEECCSSCCCC----CCGGGGGCTTCCEEECC-------SSCCCCCG-GG
T ss_pred CceEEEecCCCCCCCcC-----ccccccCcEeecCcccccc----cchhhhcCCCCCEEECC-------CCCCCCCc-cc
Confidence 46677777777776553 5589999999999999873 67789999999999999 77777888 79
Q ss_pred cCCCCcceeeccCCcccccc--chhhhcCCCCcEEecCCCcCccccchhc----cccccCceeec
Q 046115 410 EKLLHLKYLNLKGQKKIEKL--PETLCELYNLERLNVDDCQNLRELPRGI----GKLRKLMYLHN 468 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l 468 (505)
+.+++|++|+|++|. ++.+ |..++.+++|+.|+|++|+ +..+|+.+ ..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999 6666 8899999999999999999 77776643 44788988864
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=8.2e-10 Score=113.12 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=89.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....+|. .+++|+.|++++|.+++. |. .+++|+.|+|+ +|.+..+|. +
T Consensus 121 ~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls-------~N~L~~lp~-l 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTML----PE---LPTSLEVLSVR-------NNQLTFLPE-L 178 (571)
T ss_dssp TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCC----CC---CCTTCCEEECC-------SSCCSCCCC-C
T ss_pred CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCcC----CC---cCCCcCEEECC-------CCCCCCcch-h
Confidence 56666666666554443 356777777777776653 32 45678888887 566666776 5
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCC-------cEEecCCCcCccccchhccccccCceeecCCCccccccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNL-------ERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIG 482 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~ 482 (505)
+ ++|++|+|++|. ++.+|. +.. +| +.|+|++|. +..+|..+..+++|++|++++|...+..|..+.
T Consensus 179 ~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 179 P--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp C--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred h--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 4 788888888887 677777 544 66 888888887 777888887788888888888887777777776
Q ss_pred CCcc
Q 046115 483 ELIR 486 (505)
Q Consensus 483 ~l~~ 486 (505)
.+..
T Consensus 252 ~l~~ 255 (571)
T 3cvr_A 252 QQTA 255 (571)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6554
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=2.5e-09 Score=107.88 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=97.8
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++ .+..+++|+.|++.+|.+.+. .+ +..+++|+.|+++ ++.+...|+ +
T Consensus 222 ~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~---~~--~~~l~~L~~L~l~-------~n~l~~~~~-~ 283 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISNL---AP--LSGLTKLTELKLG-------ANQISNISP-L 283 (466)
T ss_dssp TCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCC---GG--GTTCTTCSEEECC-------SSCCCCCGG-G
T ss_pred CCCEEECCCCCcccch-----hhhcCCCCCEEECCCCccccc---hh--hhcCCCCCEEECC-------CCccCcccc-c
Confidence 4556666555544332 344677788888888776653 22 6777788888887 555666655 7
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
..+++|++|++++|. +..++. ++.+++|+.|++++|. +..+++ +..+++|+.|++++|... .+ +.+.++++|+.
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 284 AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVS-DV-SSLANLTNINW 357 (466)
T ss_dssp TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCC-CC-GGGTTCTTCCE
T ss_pred cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccC-Cc-hhhccCCCCCE
Confidence 778888888888887 666666 7888888888888887 555544 678888888888888743 34 35777777777
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 358 L~l~ 361 (466)
T 1o6v_A 358 LSAG 361 (466)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=2.9e-10 Score=111.78 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=92.8
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCCCCceEEEecCCCccccc-cchhHHhhcC---------cccceEEecccccCCc
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGLRGLRSLLVKSDEYSWSS-EVLPQLFEKL---------TCLRALELQVRESWPR 398 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l---------~~L~~L~l~~~~~~~~ 398 (505)
.+..+.+..+....... .++..+..+++|++|++++|.++... ..++..+..+ ++|+.|+++
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~------- 167 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG------- 167 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-------
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-------
Confidence 55666665555443110 12223346677777777777664321 1133333344 677777776
Q ss_pred ccccc--ccC---ccccCCCCcceeeccCCcccc------ccchhhhcCCCCcEEecCCCcCc----cccchhccccccC
Q 046115 399 NNLIK--EIP---TNIEKLLHLKYLNLKGQKKIE------KLPETLCELYNLERLNVDDCQNL----RELPRGIGKLRKL 463 (505)
Q Consensus 399 ~~~~~--~~p---~~~~~l~~L~~L~l~~~~~~~------~lp~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L 463 (505)
++.+. .+| ..+..+++|++|++++|. ++ -.|..+..+++|+.|+|++|... ..+|..+..+++|
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 33332 233 345667788888888877 44 23335777788888888887732 5677777778888
Q ss_pred ceeecCCCccccc----ccccc--cCCccCCcccee
Q 046115 464 MYLHNEDTGCLRY----LPAGI--GELIRLRRVREF 493 (505)
Q Consensus 464 ~~L~l~~~~~~~~----~p~~i--~~l~~L~~L~~~ 493 (505)
++|++++|..... +|..+ +.+++|+.|++.
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 8888888875443 34555 336777777654
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.97 E-value=6.2e-10 Score=114.02 Aligned_cols=132 Identities=21% Similarity=0.282 Sum_probs=106.9
Q ss_pred cceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 329 KKILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.++..+.+..+....+|. +. + +|+.|++++|.+++ +|. .+++|+.|+|+ ++.+..+|.
T Consensus 100 ~~L~~L~Ls~N~l~~ip~-l~----~--~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls-------~N~l~~lp~- 157 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE-LP----A--SLKHLDVDNNQLTM----LPE---LPALLEYINAD-------NNQLTMLPE- 157 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CC----T--TCCEEECCSSCCSC----CCC---CCTTCCEEECC-------SSCCSCCCC-
T ss_pred CCCCEEEccCCCCCCcch-hh----c--CCCEEECCCCcCCC----CCC---cCccccEEeCC-------CCccCcCCC-
Confidence 377888888887776665 32 3 99999999999876 343 67899999998 777777876
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccC-------ceeecCCCcccccccccc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKL-------MYLHNEDTGCLRYLPAGI 481 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~~~~~~~~p~~i 481 (505)
.+++|++|++++|. ++.+|. ++ ++|+.|+|++|. +..+|. +.. +| +.|++++|. +..+|..+
T Consensus 158 --~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l 226 (571)
T 3cvr_A 158 --LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENI 226 (571)
T ss_dssp --CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGG
T ss_pred --cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHH
Confidence 67899999999999 777998 66 899999999998 779998 654 77 999999998 56899988
Q ss_pred cCCccCCcccee
Q 046115 482 GELIRLRRVREF 493 (505)
Q Consensus 482 ~~l~~L~~L~~~ 493 (505)
.++++|+.|++.
T Consensus 227 ~~l~~L~~L~L~ 238 (571)
T 3cvr_A 227 LSLDPTCTIILE 238 (571)
T ss_dssp GGSCTTEEEECC
T ss_pred hcCCCCCEEEee
Confidence 888888887754
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=1.8e-08 Score=98.83 Aligned_cols=263 Identities=13% Similarity=0.072 Sum_probs=149.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCC---CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC--CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF---EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA--GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~ 75 (505)
++|+||||||+.+++ .....+ ..++|+++....+...++..++.+++...........+....+...+. +++.
T Consensus 53 ~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 130 (386)
T 2qby_A 53 LTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQV 130 (386)
T ss_dssp CTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCE
T ss_pred CCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeE
Confidence 589999999999998 554443 246688877767777888888887764333333334455555555553 4589
Q ss_pred EEEEeCCCCCC----ccChhHHHHhhcC-CCCCcEEEEEeCchHHHHHhC-----C--cceEeCCCCChhhHHHHHHHhh
Q 046115 76 LLVLDDVWNED----YYKWEPFYKCLKN-SLHESKILITTRKETVARIMG-----S--THVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 76 LlvlDdv~~~~----~~~~~~~~~~~~~-~~~~~~iLiTtr~~~~~~~~~-----~--~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+||+|+++... ...+..+...+.. ...+..+|+||+......... . ...+.+++++.++..+++....
T Consensus 131 vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 131 VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 99999995521 2233444443422 234566777887653221111 1 2489999999999999998754
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcC---CChHHH-HHHHHHhc-----c--CCCHHHHHHHHhhhhhhhhhcccCchhhHh
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCK---GLPLAA-KTIASLLR-----S--KNTEKEWQNILENEIWELEAIEKGLLAPLL 212 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~~~~l~-----~--~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 212 (505)
..... ...-..+++..+++.++ |.|..+ .++..... + .-+.+.....++... ...+.
T Consensus 211 ~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~ 278 (386)
T 2qby_A 211 QMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE----------RDRVR 278 (386)
T ss_dssp HHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------HHHHH
T ss_pred Hhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------hchHH
Confidence 21110 11122455667777777 999743 33322211 1 114455554444321 12345
Q ss_pred hccccCChhhhhhhhhhccCCC-C-CCCChHHHHHHH----HHcCCCCCCCCCCHHHHHHHHHHHHHHcccccccc
Q 046115 213 LSYNELPSKVKRCFSYCAVFPK-D-YGIRKHKLIELW----MAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFN 282 (505)
Q Consensus 213 ~s~~~L~~~~~~~ll~la~f~~-~-~~i~~~~l~~~w----~~~~~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~ 282 (505)
..+..+++.++.++..++.+.. + ..+....+...+ -..+. .......+..+++.|...|++....
T Consensus 279 ~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-----~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 279 DIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-----EAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 5667788888888877774322 1 123333221111 11111 1112345677899999999997643
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.96 E-value=2.2e-09 Score=111.32 Aligned_cols=72 Identities=26% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 413 LHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 413 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
++|++|++++|. ++.+| ..+++|+.|++++|. +..+|. .+++|++|++++|. +..+|..|.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEe
Confidence 556677777666 55566 345667777777776 666665 45677777777776 3467777777777776665
Q ss_pred e
Q 046115 493 F 493 (505)
Q Consensus 493 ~ 493 (505)
.
T Consensus 292 ~ 292 (622)
T 3g06_A 292 E 292 (622)
T ss_dssp C
T ss_pred c
Confidence 3
No 131
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.95 E-value=2.7e-09 Score=107.05 Aligned_cols=135 Identities=20% Similarity=0.182 Sum_probs=104.4
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....++ +..+++|++|++++|.+++. | +..+++|++|+++ ++.+..++ +
T Consensus 86 ~L~~L~Ls~N~l~~~~------~~~l~~L~~L~L~~N~l~~l----~--~~~l~~L~~L~l~-------~N~l~~l~--l 144 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKL----D--VSQNPLLTYLNCA-------RNTLTEID--V 144 (457)
T ss_dssp TCSEEECCSSCCSCCC------CTTCTTCCEEECCSSCCSCC----C--CTTCTTCCEEECT-------TSCCSCCC--C
T ss_pred CCCEEECcCCCCceee------cCCCCcCCEEECCCCcCCee----c--CCCCCcCCEEECC-------CCccceec--c
Confidence 5677777777666542 55889999999999987753 3 6788899999998 56666664 7
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
+.+++|++|++++|..++.+ .++.+++|+.|++++|. +..+| +..+++|+.|++++|... .+ .++.+++|+.
T Consensus 145 ~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~-~~--~l~~l~~L~~ 216 (457)
T 3bz5_A 145 SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNIT-KL--DLNQNIQLTF 216 (457)
T ss_dssp TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCS-CC--CCTTCTTCSE
T ss_pred ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCC-ee--ccccCCCCCE
Confidence 78899999999999767777 37888999999999988 77777 778889999999998744 34 3777777777
Q ss_pred ccee
Q 046115 490 VREF 493 (505)
Q Consensus 490 L~~~ 493 (505)
|++.
T Consensus 217 L~Ls 220 (457)
T 3bz5_A 217 LDCS 220 (457)
T ss_dssp EECC
T ss_pred EECc
Confidence 7653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=3.9e-09 Score=91.35 Aligned_cols=120 Identities=25% Similarity=0.404 Sum_probs=94.7
Q ss_pred ceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc-ccCCCCcceeeccCCccccccchh-hhc
Q 046115 358 LRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN-IEKLLHLKYLNLKGQKKIEKLPET-LCE 435 (505)
Q Consensus 358 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~ 435 (505)
.+.+.+.++.+... |. .-..+|+.|+++ ++.+..+|+. ++.+++|++|++++|. ++.+|.. +..
T Consensus 9 ~~~l~~~~~~l~~~----p~--~~~~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV----PT--GIPSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCSSC----CT--TCCTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCCCccC----CC--CCCCCCcEEEeC-------CCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 46788888876653 32 234689999998 6667777654 6889999999999998 7777764 589
Q ss_pred CCCCcEEecCCCcCccccchh-ccccccCceeecCCCccccccccc-ccCCccCCcccee
Q 046115 436 LYNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREF 493 (505)
Q Consensus 436 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~ 493 (505)
+++|+.|++++|. +..+|+. +..+++|++|++++|.. ..+|.. +..+++|+.|++.
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEec
Confidence 9999999999998 6777765 68999999999999984 566665 5788888887753
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=3.8e-09 Score=90.72 Aligned_cols=100 Identities=24% Similarity=0.390 Sum_probs=55.5
Q ss_pred eEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCcceeeccCCccccccchh-hhcC
Q 046115 359 RSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHLKYLNLKGQKKIEKLPET-LCEL 436 (505)
Q Consensus 359 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l 436 (505)
+.+++++|.+... |..+ ..+|++|+|+ ++.+..+ |..+..+++|++|+|++|. +..+|.. +..+
T Consensus 12 ~~l~~s~n~l~~i----p~~~--~~~l~~L~L~-------~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLASV----PTGI--PTTTQVLYLY-------DNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKL 77 (170)
T ss_dssp TEEECTTSCCSSC----CSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEeCCCCcCcc----CccC--CCCCcEEEcC-------CCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCC
Confidence 4555666555432 2211 2456666665 4444444 3445666666666666666 5555543 3566
Q ss_pred CCCcEEecCCCcCccccchh-ccccccCceeecCCCcc
Q 046115 437 YNLERLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 473 (505)
++|+.|+|++|. +..+|+. +..+++|++|++++|..
T Consensus 78 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 78 TQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 666666666665 5555543 56666666666666653
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=2.1e-09 Score=111.39 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=89.0
Q ss_pred CCCceEEEecCCCccccccchhHHhh--------------cCcccceEEecccccCCccccccccCccccCCCCcceeec
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFE--------------KLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNL 420 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~--------------~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l 420 (505)
+++|+.|++++|.++.....+ ..+. .+++|+.|+++ ++.+..+| ..+++|++|++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls-------~N~L~~lp---~~l~~L~~L~L 248 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVS-------GNRLTSLP---VLPSELKELMV 248 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCCCCCTTCCEEECC-------SSCCSCCC---CCCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCCCCcc-chhhEEECcCCcccccCCCCCCCCEEEcc-------CCccCcCC---CCCCcCcEEEC
Confidence 366666777766665432211 1111 12667888887 56666676 45689999999
Q ss_pred cCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcccccccccccCCccCCc
Q 046115 421 KGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 489 (505)
Q Consensus 421 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 489 (505)
++|. ++.+|. .+++|+.|+|++|. +..+|..+.++++|+.|++++|...+..|..+..+++...
T Consensus 249 s~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~ 312 (622)
T 3g06_A 249 SGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312 (622)
T ss_dssp CSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTT
T ss_pred CCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccccc
Confidence 9998 888988 67899999999998 7799999999999999999999988777776666554433
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=1.8e-09 Score=106.17 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=90.3
Q ss_pred ceeEEEEEecCCCcc-ccccccCCCCCCCceEEEecCCCcc--ccccchhHHhhcCcccceEEecccccCCccccc----
Q 046115 330 KILHLLLTLRRGASV-PISIWGNVTGLRGLRSLLVKSDEYS--WSSEVLPQLFEKLTCLRALELQVRESWPRNNLI---- 402 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 402 (505)
.+..+.+..+..... ...+...+..+++|++|.+.+|.++ +.....|..+..+++|+.|+|+ ++.+
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls-------~n~l~~~g 232 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ-------DNTFTHLG 232 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECC-------SSCCHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECc-------CCCCCcHH
Confidence 566666666655411 1111123446778888888888765 2222244356778888888887 4444
Q ss_pred -cccCccccCCCCcceeeccCCccccc----cchhhh--cCCCCcEEecCCCcCcc----ccchhc-cccccCceeecCC
Q 046115 403 -KEIPTNIEKLLHLKYLNLKGQKKIEK----LPETLC--ELYNLERLNVDDCQNLR----ELPRGI-GKLRKLMYLHNED 470 (505)
Q Consensus 403 -~~~p~~~~~l~~L~~L~l~~~~~~~~----lp~~~~--~l~~L~~L~l~~~~~~~----~lp~~~-~~l~~L~~L~l~~ 470 (505)
..+|..+..+++|++|+|++|..... +|..+. .+++|+.|+|++|.... .+|..+ .++++|++|++++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 55677777888888888888873222 455553 37888888888887333 277776 5678888888888
Q ss_pred Ccccccc
Q 046115 471 TGCLRYL 477 (505)
Q Consensus 471 ~~~~~~~ 477 (505)
|...+..
T Consensus 313 N~l~~~~ 319 (386)
T 2ca6_A 313 NRFSEED 319 (386)
T ss_dssp SBSCTTS
T ss_pred CcCCcch
Confidence 8755433
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=8.7e-09 Score=88.80 Aligned_cols=97 Identities=28% Similarity=0.444 Sum_probs=82.1
Q ss_pred cceEEecccccCCccccccccCccccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccchh-cccccc
Q 046115 385 LRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPRG-IGKLRK 462 (505)
Q Consensus 385 L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 462 (505)
-+.++++ ++.+..+|..+. ++|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|.. +..+++
T Consensus 14 ~~~l~~~-------~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQ-------NIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECC-------SSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CcEEEeC-------CCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcch
Confidence 4788888 777889998764 899999999999 6666 6678999999999999998 8888876 589999
Q ss_pred CceeecCCCccccccccc-ccCCccCCcccee
Q 046115 463 LMYLHNEDTGCLRYLPAG-IGELIRLRRVREF 493 (505)
Q Consensus 463 L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~ 493 (505)
|++|++++|. +..+|.. |..+++|+.|++.
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCSEEECC
T ss_pred hhEEECCCCc-cceeCHHHhccccCCCEEEeC
Confidence 9999999998 5567665 8889999888764
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1e-08 Score=88.03 Aligned_cols=98 Identities=28% Similarity=0.409 Sum_probs=82.3
Q ss_pred ccceEEecccccCCccccccccCccccCCCCcceeeccCCcccccc-chhhhcCCCCcEEecCCCcCccccchh-ccccc
Q 046115 384 CLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKL-PETLCELYNLERLNVDDCQNLRELPRG-IGKLR 461 (505)
Q Consensus 384 ~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~ 461 (505)
..+.++++ ++.+..+|..+ .++|++|+|++|. +..+ |..+..+++|+.|+|++|. +..+|+. +..++
T Consensus 10 ~~~~l~~s-------~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCS-------GKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECT-------TSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCEEEeC-------CCCcCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 56889998 77788898766 4899999999999 6666 6678999999999999998 7788776 58999
Q ss_pred cCceeecCCCcccccccc-cccCCccCCcccee
Q 046115 462 KLMYLHNEDTGCLRYLPA-GIGELIRLRRVREF 493 (505)
Q Consensus 462 ~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 493 (505)
+|++|++++|.+ ..+|. .|.++++|+.|++.
T Consensus 79 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 79 QLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeC
Confidence 999999999984 55665 48899999888764
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.82 E-value=6.7e-08 Score=88.06 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHH-HH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETV-AR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~-~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++.+||+||++......+..+...+.....++.+++||+.... .. .......+.+++++.++..+++.......+.
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 46799999999776555667777777766677888888876432 11 1233468999999999999999877643221
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
.-.++.+..|++.|+|.|..+..+...+
T Consensus 204 ---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 ---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1124567889999999999888776544
No 139
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=1.8e-08 Score=100.96 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=84.3
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....+| .+..+++|++|++++|.+++. |. .+.+|++|+++ ++.+..+| .+
T Consensus 132 ~L~~L~L~~n~l~~lp-----~~~~l~~L~~L~l~~N~l~~l----p~---~~~~L~~L~L~-------~n~l~~l~-~~ 191 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNNSLKKL----PD---LPPSLEFIAAG-------NNQLEELP-EL 191 (454)
T ss_dssp TCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSCC----CC---CCTTCCEEECC-------SSCCSSCC-CC
T ss_pred CCCEEECcCCCCCCCc-----ccCCCCCCCEEECCCCcCccc----CC---CcccccEEECc-------CCcCCcCc-cc
Confidence 5666666666555443 355777788888877776542 22 23477777777 55566666 57
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG 480 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 480 (505)
+.+++|++|++++|. +..+|.. ..+|+.|++++|. +..+| .++.+++|++|++++|. +..+|..
T Consensus 192 ~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~ 255 (454)
T 1jl5_A 192 QNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNL-LKTLPDL 255 (454)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCSC
T ss_pred cCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCc-CCccccc
Confidence 788888888888887 6666652 2578888888887 66777 47788888888888886 3445543
No 140
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.75 E-value=3.2e-08 Score=99.12 Aligned_cols=122 Identities=25% Similarity=0.257 Sum_probs=77.0
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNI 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~ 409 (505)
.+..+.+..+....+|. ...+|++|++.+|.+++ +|. +..+++|+.|+++ ++.+..+|..
T Consensus 154 ~L~~L~l~~N~l~~lp~-------~~~~L~~L~L~~n~l~~----l~~-~~~l~~L~~L~l~-------~N~l~~l~~~- 213 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE----LPE-LQNLPFLTAIYAD-------NNSLKKLPDL- 213 (454)
T ss_dssp TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS----CCC-CTTCTTCCEEECC-------SSCCSSCCCC-
T ss_pred CCCEEECCCCcCcccCC-------CcccccEEECcCCcCCc----Ccc-ccCCCCCCEEECC-------CCcCCcCCCC-
Confidence 45566666655554432 22477777777777654 332 6677777777777 4555555542
Q ss_pred cCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccccc
Q 046115 410 EKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG 480 (505)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 480 (505)
.++|++|++++|. +..+|. ++.+++|+.|++++|. +..+|.. +++|++|++++|. +..+|..
T Consensus 214 --~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~~ 275 (454)
T 1jl5_A 214 --PLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY-LTDLPEL 275 (454)
T ss_dssp --CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC-CSCCCCC
T ss_pred --cCcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc-ccccCcc
Confidence 2477777777776 567774 7777777777777776 5566643 3567777777776 3345543
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.62 E-value=7.2e-07 Score=79.85 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=95.1
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||++|+.+++ ..... +. ..+.++.............+..... .. ....+++.+||
T Consensus 46 ~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~vli 107 (226)
T 2chg_A 46 PPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR-TA---------------PIGGAPFKIIF 107 (226)
T ss_dssp STTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT-SC---------------CSTTCSCEEEE
T ss_pred CCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhc-cc---------------CCCccCceEEE
Confidence 479999999999987 44222 22 2334444443333222221111111 00 01135689999
Q ss_pred EeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHH-HH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCchHH
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETV-AR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLE 156 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~-~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~ 156 (505)
+||++.........+...+.....++.+++||+.... .. .......+.+.+++.++..+++...+...+. . -.+
T Consensus 108 iDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~ 183 (226)
T 2chg_A 108 LDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITE 183 (226)
T ss_dssp EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCH
T ss_pred EeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-C---CCH
Confidence 9999776554556677666666677888888876531 11 1233448899999999999999876532221 1 124
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 046115 157 KIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 157 ~~~~~i~~~~~g~Plal~~~~~ 178 (505)
+.+..+++.++|.|..+..+..
T Consensus 184 ~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 184 DGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5677899999999986554443
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.62 E-value=1.2e-07 Score=91.76 Aligned_cols=158 Identities=21% Similarity=0.269 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCcccc-----------------------ccchhHHhhcCcccc
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWS-----------------------SEVLPQLFEKLTCLR 386 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~l~~L~ 386 (505)
.+..+.+..+.+..++.. .|.++++|++|++++|.+... ....|..|..+++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TCSEEEEESCCCSEECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCEEEccCCcCCCcCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 566677777666655543 234677777777777654221 111344466777788
Q ss_pred eEEeccccc--CC----------------ccccccccCc-cccCC-CCcceeeccCCccccccchhhhcCCCCcEEecCC
Q 046115 387 ALELQVRES--WP----------------RNNLIKEIPT-NIEKL-LHLKYLNLKGQKKIEKLPETLCELYNLERLNVDD 446 (505)
Q Consensus 387 ~L~l~~~~~--~~----------------~~~~~~~~p~-~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 446 (505)
+|+++++.. .+ .++.+..+|. .+..+ ..+++|++++|. ++.+|..+....+|+.|++++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhcc
Confidence 887774211 00 1122222322 22333 357778888888 777877776677888888887
Q ss_pred CcCccccchh-ccccccCceeecCCCccccccccc-ccCCccCCccce
Q 046115 447 CQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVRE 492 (505)
Q Consensus 447 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~ 492 (505)
|..+..+|.. +..+++|++|++++|. +..+|.. +.+++.|+.++.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccC
Confidence 6668888865 6888899999999887 5677754 566665555443
No 143
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.61 E-value=7.2e-08 Score=93.20 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=78.8
Q ss_pred ccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCcCccccchhcccccc
Q 046115 384 CLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQNLRELPRGIGKLRK 462 (505)
Q Consensus 384 ~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 462 (505)
.++.|+|+ ++.+..+|.......+|+.|++.++..++.+|.. +..+++|+.|++++|+ +..+|... +.+
T Consensus 155 ~l~~L~L~-------~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~--~~~ 224 (350)
T 4ay9_X 155 ESVILWLN-------KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYG--LEN 224 (350)
T ss_dssp SCEEEECC-------SSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSS--CTT
T ss_pred hhhhhccc-------cccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhh--hcc
Confidence 57778887 7778888888777889999999977669999874 5899999999999998 89999752 556
Q ss_pred CceeecCCCcccccccccccCCccCCccce
Q 046115 463 LMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 463 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
|+.|.+.++..+..+|. +.++++|+.+++
T Consensus 225 L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp CCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred chHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 77777767766788884 777777777664
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=1e-07 Score=91.95 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCCCCceEEEecC-CCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCcccccc
Q 046115 352 VTGLRGLRSLLVKS-DEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKL 429 (505)
Q Consensus 352 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~l 429 (505)
+..+++|+.|+|++ |.++.. .+..|..+.+|+.|+|+ ++.+..+| ..|..|++|++|+|++|. ++.+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIV-------KSGLRFVAPDAFHFTPRLSRLNLSFNA-LESL 95 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECC-------SSCCCEECTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECC-------CCccceeCHHHhcCCcCCCEEeCCCCc-ccee
Confidence 33666667777764 665543 44456666666677666 44444443 345666666666666666 5556
Q ss_pred chhhhcCCCCcEEecCCCc
Q 046115 430 PETLCELYNLERLNVDDCQ 448 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~ 448 (505)
|..+.....|+.|+|.+|+
T Consensus 96 ~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCCCCEEECCSSC
T ss_pred CHHHcccCCceEEEeeCCC
Confidence 5544333336666666665
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.60 E-value=3.4e-08 Score=96.02 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=93.7
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCC-CCceEEEecCCCccccc-cchhHHhhcC-cccceEEecccccCCcccccccc
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGL-RGLRSLLVKSDEYSWSS-EVLPQLFEKL-TCLRALELQVRESWPRNNLIKEI 405 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~ 405 (505)
.+..+.+..+....... .+...+... ++|++|++++|.++... ..+...+..+ ++|+.|+|+ ++.+...
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~ 124 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-------WNDFSSK 124 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-------SSCGGGS
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-------CCcCCcH
Confidence 56677776665543322 122111122 78888888888876431 1122234444 788888888 5555554
Q ss_pred Cc-c----ccC-CCCcceeeccCCcccc-----ccchhhhcCC-CCcEEecCCCcCccccchh----cccc-ccCceeec
Q 046115 406 PT-N----IEK-LLHLKYLNLKGQKKIE-----KLPETLCELY-NLERLNVDDCQNLRELPRG----IGKL-RKLMYLHN 468 (505)
Q Consensus 406 p~-~----~~~-l~~L~~L~l~~~~~~~-----~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~----~~~l-~~L~~L~l 468 (505)
+. . +.. .++|++|++++|. ++ .++..+..++ +|+.|++++|......+.. +... ++|++|++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 43 2 233 3589999999888 44 4555556665 8999999998833333333 3444 58999999
Q ss_pred CCCcccc----cccccccCC-ccCCcccee
Q 046115 469 EDTGCLR----YLPAGIGEL-IRLRRVREF 493 (505)
Q Consensus 469 ~~~~~~~----~~p~~i~~l-~~L~~L~~~ 493 (505)
++|.... .++..+..+ ++|+.|++-
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 9987443 155555543 477777654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.7e-07 Score=90.45 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred EEEecCC-CccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccc-hhhhcC
Q 046115 360 SLLVKSD-EYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLP-ETLCEL 436 (505)
Q Consensus 360 ~L~l~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l 436 (505)
.++..++ .++. +|. +..+.+|+.|+|+ +++.+..+| ..++.|++|++|+|++|. +..+| ..+..+
T Consensus 12 ~v~~~~~n~l~~----ip~-l~~~~~L~~L~l~------~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDS----LHH-LPGAENLTELYIE------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCCTT----TTT-SCSCSCCSEEECC------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSC
T ss_pred EEEcCCCCCCCc----cCC-CCCCCCeeEEEcc------CCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCC
Confidence 4577776 6654 677 8889999999998 227788777 568999999999999999 66555 467999
Q ss_pred CCCcEEecCCCcCccccchhccccccCceeecCCCcccc
Q 046115 437 YNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLR 475 (505)
Q Consensus 437 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 475 (505)
++|+.|+|++|. +..+|+.+....+|+.|++.+|....
T Consensus 80 ~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 PRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 999999999999 78888765444449999999998543
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.50 E-value=7.7e-08 Score=93.47 Aligned_cols=153 Identities=11% Similarity=0.122 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCCC-CceEEEecCCCccccccchhHHhhcC-----cccceEEecccccCCccccc
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGLR-GLRSLLVKSDEYSWSSEVLPQLFEKL-----TCLRALELQVRESWPRNNLI 402 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~ 402 (505)
.+..+.+..+.....+. .+...+..++ +|+.|++++|.++.. .+..+..+ ++|+.|+|+ ++.+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---~~~~l~~~l~~~~~~L~~L~Ls-------~n~l 92 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK---NSDELVQILAAIPANVTSLNLS-------GNFL 92 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS---CHHHHHHHHHTSCTTCCEEECC-------SSCG
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH---HHHHHHHHHhccCCCccEEECc-------CCcC
Confidence 47777777776655442 1113344677 899999999987654 33334443 889999998 5555
Q ss_pred cccCcc-----ccCC-CCcceeeccCCccccccch-hhh----c-CCCCcEEecCCCcCcc----ccchhccccc-cCce
Q 046115 403 KEIPTN-----IEKL-LHLKYLNLKGQKKIEKLPE-TLC----E-LYNLERLNVDDCQNLR----ELPRGIGKLR-KLMY 465 (505)
Q Consensus 403 ~~~p~~-----~~~l-~~L~~L~l~~~~~~~~lp~-~~~----~-l~~L~~L~l~~~~~~~----~lp~~~~~l~-~L~~ 465 (505)
...+.. +..+ ++|++|++++|. ++..+. .+. . ..+|+.|++++|.... .++..+..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 544322 4445 789999999999 554443 333 3 3689999999988332 4555566666 8999
Q ss_pred eecCCCcccccccccc----cCC-ccCCcccee
Q 046115 466 LHNEDTGCLRYLPAGI----GEL-IRLRRVREF 493 (505)
Q Consensus 466 L~l~~~~~~~~~p~~i----~~l-~~L~~L~~~ 493 (505)
|++++|......+..+ ..+ ++|+.|++-
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 9999998555444333 334 477777653
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.42 E-value=1.2e-07 Score=95.18 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=91.8
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCCC-CceEEEecCCCccccc-cchhHHhhcCcccceEEecccccCCcccccccc-
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGLR-GLRSLLVKSDEYSWSS-EVLPQLFEKLTCLRALELQVRESWPRNNLIKEI- 405 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 405 (505)
.++.+.+..+....... .+...+.... +|++|++++|.++... ..++..+..+++|+.|+++ ++.+...
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~i~~~~ 129 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-------DNLLGDAG 129 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC-------SSBCHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC-------CCcCchHH
Confidence 56666666554432111 1111111111 6888888888765321 2356667778888888887 3333321
Q ss_pred Cccc-----cCCCCcceeeccCCcccc----ccchhhhcCCCCcEEecCCCcCccccchhcc-----ccccCceeecCCC
Q 046115 406 PTNI-----EKLLHLKYLNLKGQKKIE----KLPETLCELYNLERLNVDDCQNLRELPRGIG-----KLRKLMYLHNEDT 471 (505)
Q Consensus 406 p~~~-----~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~ 471 (505)
+..+ ...++|++|++++|.... .++..+..+++|+.|++++|......+..+. ..++|++|++++|
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 2211 235578888888887322 2455567778888888888873222222222 2558888888888
Q ss_pred ccccc----ccccccCCccCCcccee
Q 046115 472 GCLRY----LPAGIGELIRLRRVREF 493 (505)
Q Consensus 472 ~~~~~----~p~~i~~l~~L~~L~~~ 493 (505)
..... +|..+..+++|+.|++-
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred CCcHHHHHHHHHHHHhCCCccEEecc
Confidence 74432 46666777888877764
No 149
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=1.6e-07 Score=94.46 Aligned_cols=157 Identities=22% Similarity=0.157 Sum_probs=97.8
Q ss_pred ceeEEEEEecCCCcccc-ccccCCCCCCCceEEEecCCCccccc--cchhHHhhcCcccceEEecccccCCccccccc--
Q 046115 330 KILHLLLTLRRGASVPI-SIWGNVTGLRGLRSLLVKSDEYSWSS--EVLPQLFEKLTCLRALELQVRESWPRNNLIKE-- 404 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 404 (505)
.+..+.+..+....... .++..+..+++|+.|++++|.++... ...+..+..+++|+.|+++ ++.+..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-------~n~l~~~~ 272 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-------ECGITAKG 272 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-------TSCCCHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-------CCCCCHHH
Confidence 56666666665443211 12223346788888888888765421 1112223357888888888 444544
Q ss_pred ---cCccccCCCCcceeeccCCccccccchhhhc-----CCCCcEEecCCCcCccc----cchhccccccCceeecCCCc
Q 046115 405 ---IPTNIEKLLHLKYLNLKGQKKIEKLPETLCE-----LYNLERLNVDDCQNLRE----LPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 405 ---~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-----l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~ 472 (505)
++..+..+++|++|++++|.....-+..+.. .++|+.|++++|..... +|..+..+++|++|++++|.
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 5666777888999999988732222222322 36899999999884332 56677788899999999997
Q ss_pred ccccccccccC-----CccCCcccee
Q 046115 473 CLRYLPAGIGE-----LIRLRRVREF 493 (505)
Q Consensus 473 ~~~~~p~~i~~-----l~~L~~L~~~ 493 (505)
.....+..+.. .++|+.|++.
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred cccccHHHHHHHHcCCCCceEEEECC
Confidence 55443443332 5577776654
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=3.3e-06 Score=80.36 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=92.9
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CC-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FE-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLL 77 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 77 (505)
++|+|||++|+.+++ ..... +. ..++++....... ...+.++..+... ...+ .+++.++
T Consensus 50 ~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~---------------~~~~~~~~~~vi 111 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI-DVVRNQIKHFAQK---------------KLHLPPGKHKIV 111 (323)
T ss_dssp STTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH-HHHHTHHHHHHHB---------------CCCCCTTCCEEE
T ss_pred cCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh-HHHHHHHHHHHhc---------------cccCCCCCceEE
Confidence 479999999999998 44222 21 2334443332221 1112222111100 0011 3458899
Q ss_pred EEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCCchH
Q 046115 78 VLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENL 155 (505)
Q Consensus 78 vlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~ 155 (505)
|+||++.........+...+.....++.+++||+... +.. .......+.+.+++.++..+++...+...+. . -.
T Consensus 112 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~ 187 (323)
T 1sxj_B 112 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-K---YT 187 (323)
T ss_dssp EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BC
T ss_pred EEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-C---CC
Confidence 9999977554455566666666666778888887642 111 1233458999999999999999876532221 1 12
Q ss_pred HHHHHHHHHHcCCChH-HHHHHHH
Q 046115 156 EKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 156 ~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
++.+..+++.++|.|. |+..+..
T Consensus 188 ~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 188 NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567889999999994 4554443
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.24 E-value=1.4e-06 Score=90.50 Aligned_cols=132 Identities=14% Similarity=-0.043 Sum_probs=77.1
Q ss_pred CCCCceEEEecCCCccccc-cchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccc---ccc
Q 046115 354 GLRGLRSLLVKSDEYSWSS-EVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKI---EKL 429 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~~l 429 (505)
.+++|++|.+.+|.+++.. ..++..+.++++|+.|+++ ++.+..+|..+..+++|++|+++.+... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-------DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-------SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-------CccHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 4455666666555543111 1244445555666666665 3334445555555666666666543211 223
Q ss_pred chhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCccccccc-ccccCCccCCcccee
Q 046115 430 PETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREF 493 (505)
Q Consensus 430 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~ 493 (505)
+..+..+++|+.|+++++. ...+|..+..+++|++|++++|......+ ..+..+++|+.|++.
T Consensus 263 ~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3345556666666666654 56677778888899999999987333222 335788888888765
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=5.1e-07 Score=87.70 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=91.7
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccc-cchhHHh-hcCcccceEEecccccCCccccccc---
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSS-EVLPQLF-EKLTCLRALELQVRESWPRNNLIKE--- 404 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~--- 404 (505)
.+..+.+..+...... ...-...+++|+.|++++|.++... ..+...+ ...++|+.|+|+ ++.++.
T Consensus 102 ~L~~L~Ls~n~l~~~~--~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls-------~n~l~~~~~ 172 (372)
T 3un9_A 102 ALDEVNLASCQLDPAG--LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS-------NNPLTAAGV 172 (372)
T ss_dssp CEEEEECTTCCCCHHH--HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECC-------SSCCHHHHH
T ss_pred CceEEEecCCCCCHHH--HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCC-------CCCCChHHH
Confidence 5667777666554211 1111124568999999999875431 1122222 246789999998 444433
Q ss_pred --cCccccCCCCcceeeccCCcccc-----ccchhhhcCCCCcEEecCCCcCcc-----ccchhccccccCceeecCCCc
Q 046115 405 --IPTNIEKLLHLKYLNLKGQKKIE-----KLPETLCELYNLERLNVDDCQNLR-----ELPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 405 --~p~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~ 472 (505)
++..+..+++|++|+|++|. ++ .++..+...++|+.|+|++|. +. .++..+...++|++|++++|.
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 44556778899999999998 54 335556778899999999998 44 344456677899999999998
Q ss_pred ccccccccc
Q 046115 473 CLRYLPAGI 481 (505)
Q Consensus 473 ~~~~~p~~i 481 (505)
+...-...+
T Consensus 251 i~~~g~~~L 259 (372)
T 3un9_A 251 LSSEGRQVL 259 (372)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 544333333
No 153
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.15 E-value=2.6e-06 Score=88.39 Aligned_cols=155 Identities=17% Similarity=0.009 Sum_probs=108.6
Q ss_pred ceeEEEEEecCCCccc-cccccCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCcc
Q 046115 330 KILHLLLTLRRGASVP-ISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTN 408 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~ 408 (505)
.+..+.+..+....+. ..+...+..+++|++|.+.+|.+.+ +|..+..+++|+.|+++.... .......+..
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~ 265 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE----LVGFFKAAANLEEFCGGSLNE---DIGMPEKYMN 265 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG----GHHHHHHCTTCCEEEECBCCC---CTTCTTSSSC
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH----HHHHHhhhhHHHhhccccccc---ccchHHHHHH
Confidence 5566666555544222 2333334478999999999987654 677788999999999973110 1111344556
Q ss_pred ccCCCCcceeeccCCccccccchhhhcCCCCcEEecCCCcCccc--cchhccccccCceeecCCCcccccccccccCCcc
Q 046115 409 IEKLLHLKYLNLKGQKKIEKLPETLCELYNLERLNVDDCQNLRE--LPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 486 (505)
Q Consensus 409 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 486 (505)
+..+++|+.|+++.+. ...+|..+..+++|+.|++++|. +.. ++..+..+++|++|++.++.....++..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 7888999999999876 77888878889999999999998 432 3334688999999999855433344444467888
Q ss_pred CCcccee
Q 046115 487 LRRVREF 493 (505)
Q Consensus 487 L~~L~~~ 493 (505)
|+.|++.
T Consensus 344 L~~L~L~ 350 (592)
T 3ogk_B 344 LKRLRIE 350 (592)
T ss_dssp CCEEEEE
T ss_pred CCEEEee
Confidence 8888876
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.04 E-value=1.7e-06 Score=89.93 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=94.0
Q ss_pred ceeEEEEEecCCCccccccccCCC-CCCCceEEEecCCC-ccccccchhHHhhcCcccceEEecccccCCccccccc---
Q 046115 330 KILHLLLTLRRGASVPISIWGNVT-GLRGLRSLLVKSDE-YSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE--- 404 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 404 (505)
.+..+.+........ ....+. .+++|+.|.+.+|. ++. ..++..+..+++|++|+++ ++.+..
T Consensus 106 ~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~-------~~~i~~~~~ 173 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDD---CLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLR-------ESDVDDVSG 173 (594)
T ss_dssp TCCEEEEESCBCCHH---HHHHHHHHCTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECT-------TCEEECCCG
T ss_pred CCCeEEeeCcEEcHH---HHHHHHHhCCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCc-------CCccCCcch
Confidence 566677666543321 112222 46788888888873 321 1255556678888888887 332222
Q ss_pred --cCccccCCCCcceeeccCCc-cc--cccchhhhcCCCCcEEecCCCcCccccchhccccccCceeecCCCcc------
Q 046115 405 --IPTNIEKLLHLKYLNLKGQK-KI--EKLPETLCELYNLERLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGC------ 473 (505)
Q Consensus 405 --~p~~~~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------ 473 (505)
++.....+++|++|++++|. .+ ..++..+..+++|+.|++++|..+..+|..+..+++|++|++..+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 22323467788888888886 11 22333345678899999988866777887888888888888665531
Q ss_pred cccccccccCCccCCcc
Q 046115 474 LRYLPAGIGELIRLRRV 490 (505)
Q Consensus 474 ~~~~p~~i~~l~~L~~L 490 (505)
...++..+.++++|+.|
T Consensus 254 ~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHhcCCCcccc
Confidence 23345567777888777
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=1.6e-05 Score=75.75 Aligned_cols=104 Identities=10% Similarity=0.017 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHH-HHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETV-ARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~-~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++.++|+|+++.........+...+.....++++++||....- ... ......+.+.+++.++..+++...+...+.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~- 187 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 187 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-
Confidence 56789999999776555566677777666677888888876431 111 122347899999999999999876543222
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIASL 179 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 179 (505)
.-.++++..+++.++|.|..+..+...
T Consensus 188 ---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 188 ---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 122466788999999999865544443
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=1.4e-06 Score=84.62 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-----ccc-cCCCCcceeeccCCcccc--
Q 046115 356 RGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-----TNI-EKLLHLKYLNLKGQKKIE-- 427 (505)
Q Consensus 356 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-----~~~-~~l~~L~~L~l~~~~~~~-- 427 (505)
.+|+.|++++|.++.. .+......+.+|+.|+|+ ++.++... ..+ ...++|++|+|++|. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~--~~~~l~~~L~~L~~L~Ls-------~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~ 170 (372)
T 3un9_A 101 HALDEVNLASCQLDPA--GLRTLLPVFLRARKLGLQ-------LNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAA 170 (372)
T ss_dssp SCEEEEECTTCCCCHH--HHHHTHHHHHTEEEEECC-------SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHH
T ss_pred CCceEEEecCCCCCHH--HHHHHHHHHHhccHhhcC-------CCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChH
Confidence 4566666666655321 122222334456666665 33332211 111 134556666666665 32
Q ss_pred ---ccchhhhcCCCCcEEecCCCcCccc-----cchhccccccCceeecCCCcc
Q 046115 428 ---KLPETLCELYNLERLNVDDCQNLRE-----LPRGIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 428 ---~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~ 473 (505)
.++..+..+++|++|+|++|. +.. ++..+...++|++|++++|..
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 233334555666666666665 322 233445555666666666653
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.98 E-value=9.1e-05 Score=71.86 Aligned_cols=103 Identities=12% Similarity=0.166 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++.++|+|+++.........+...+.....+..+|++|.... +.. .......+.+.+++.++..+++.......+.
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~- 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 4678999999977665566777777776666677777776532 211 1233468899999999999999866532121
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
.-.++++..+++.++|.|..+..+..
T Consensus 197 ---~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 197 ---AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp ---CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11245678899999999987765543
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.95 E-value=1.7e-05 Score=71.80 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=84.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ ........++|+++....+. +... .+.+ .++.+||+|
T Consensus 60 ~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~------~~~~-------------------~~~~-~~~~vliiD 111 (242)
T 3bos_A 60 PVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI------STAL-------------------LEGL-EQFDLICID 111 (242)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS------CGGG-------------------GTTG-GGSSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH------HHHH-------------------HHhc-cCCCEEEEe
Confidence 479999999999998 55444445667776442110 0000 0011 345689999
Q ss_pred CCCCCCccC--hhHHHHhhcCC-CCC-cEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCC
Q 046115 81 DVWNEDYYK--WEPFYKCLKNS-LHE-SKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGK 147 (505)
Q Consensus 81 dv~~~~~~~--~~~~~~~~~~~-~~~-~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 147 (505)
|++...... ...+...+... ..+ .++++||+.. .+...+.....+.+++++.++..+++...+...+
T Consensus 112 e~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~ 191 (242)
T 3bos_A 112 DVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG 191 (242)
T ss_dssp TGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC
Confidence 996643222 23333332221 122 2477777632 1222221125889999999999999987764222
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 046115 148 TIGKRENLEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
. .-.++++..+++.++|.+-.+..+..
T Consensus 192 ~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 192 L----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp C----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 11246677888999998866554433
No 159
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=0.00014 Score=69.28 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=67.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|+++.........+...+.....++.+|++|.++. +... ......+.+.+++.++..+++.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 4678899999977665556678887777666777777776642 2222 2334589999999999999987754 1
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
-.++.+..+++.++|.|.....
T Consensus 182 ----~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 182 ----MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp ----CCHHHHHHHHHHTTTCHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHH
Confidence 1135567899999999965433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=4.3e-06 Score=76.40 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCCCcceeeccCCccccc---cchhhhcCCCCcEEecCCCcCccccchhccccc--cCceeecCCCcccccccc------
Q 046115 411 KLLHLKYLNLKGQKKIEK---LPETLCELYNLERLNVDDCQNLRELPRGIGKLR--KLMYLHNEDTGCLRYLPA------ 479 (505)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~p~------ 479 (505)
.+++|+.|+|++|. +.. +|..++.+++|+.|+|++|. +..+ ..+..++ +|++|++++|+..+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34455555555555 222 22334455555555555555 3333 1222233 555555555554333331
Q ss_pred -cccCCccCCccceeEec
Q 046115 480 -GIGELIRLRRVREFVVG 496 (505)
Q Consensus 480 -~i~~l~~L~~L~~~~~~ 496 (505)
.+..+++|+.|+...++
T Consensus 245 ~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHHCTTCCEESSCBCC
T ss_pred HHHHHCcccCeECCcCCC
Confidence 23455555555554443
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=1e-05 Score=73.85 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=70.5
Q ss_pred EEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc---CccccCCCCcceeeccCCccccccchhhhcCC
Q 046115 361 LLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI---PTNIEKLLHLKYLNLKGQKKIEKLPETLCELY 437 (505)
Q Consensus 361 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 437 (505)
+++..|........++....++++|+.|+|+ +|.+..+ |..++.+++|++|+|++|. +..+.. +..+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~ 218 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIK 218 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECT-------TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGT
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECC-------CCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcc
Confidence 4455554333333344444678999999999 5655554 4566789999999999999 666533 55555
Q ss_pred --CCcEEecCCCcCccccch-------hccccccCceee
Q 046115 438 --NLERLNVDDCQNLRELPR-------GIGKLRKLMYLH 467 (505)
Q Consensus 438 --~L~~L~l~~~~~~~~lp~-------~~~~l~~L~~L~ 467 (505)
+|+.|+|++|+....+|. .+..+|+|+.|+
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999999996666662 367889999987
No 162
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.88 E-value=5.6e-06 Score=85.94 Aligned_cols=133 Identities=22% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCCceEEEecCCCcccc-ccchhHHhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCc--------
Q 046115 354 GLRGLRSLLVKSDEYSWS-SEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQK-------- 424 (505)
Q Consensus 354 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~-------- 424 (505)
.+++|++|.+.++. ... ...++..+..+++|+.|+++ ++..+..+|..+..+++|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN------RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC------TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC------CCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 45566666666664 111 01133334455666666666 222333344444455555555433221
Q ss_pred ----------------------cccccchhhhcCCCCcEEecCCCcCccc--cchhccccccCceeecCCCccccccccc
Q 046115 425 ----------------------KIEKLPETLCELYNLERLNVDDCQNLRE--LPRGIGKLRKLMYLHNEDTGCLRYLPAG 480 (505)
Q Consensus 425 ----------------------~~~~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 480 (505)
....+|..+..+++|+.|++++|. +.. ++..+..+++|++|++.+|.....++..
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 023345444567788888888877 432 2223567788888888877322222322
Q ss_pred ccCCccCCccceeE
Q 046115 481 IGELIRLRRVREFV 494 (505)
Q Consensus 481 i~~l~~L~~L~~~~ 494 (505)
...+++|+.|++..
T Consensus 334 ~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 334 ASTCKDLRELRVFP 347 (594)
T ss_dssp HHHCTTCCEEEEEC
T ss_pred HHhCCCCCEEEEec
Confidence 34577788887654
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00033 Score=65.53 Aligned_cols=137 Identities=10% Similarity=-0.009 Sum_probs=79.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC-----C-C-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc---
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-----F-E-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV--- 70 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-----f-~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--- 70 (505)
++|+|||++|+.+++ +.... . . ..+.+++....+....+..|++++........... +....+...+
T Consensus 53 pPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~-~~L~~~f~~~~~~ 129 (318)
T 3te6_A 53 ADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISL-EALNFYITNVPKA 129 (318)
T ss_dssp CCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCH-HHHHHHHHHSCGG
T ss_pred CCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHH-HHHHHHHHHhhhc
Confidence 489999999999998 44321 1 1 34578888888889999999999963322111222 2233333332
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhc--CCC-CCcEEEEEeCchH-----HHH----HhCCcceEeCCCCChhhHHHH
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLK--NSL-HESKILITTRKET-----VAR----IMGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~--~~~-~~~~iLiTtr~~~-----~~~----~~~~~~~~~l~~l~~~ea~~L 138 (505)
.+++++++||.++.-. .-+.+...+. ... ....||.++...+ +.. .+. ...+...+.+.+|-.++
T Consensus 130 ~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 130 KKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQM 206 (318)
T ss_dssp GSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHH
T ss_pred cCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHH
Confidence 4568999999996643 2222332222 121 2223344443321 111 111 24789999999999999
Q ss_pred HHHhh
Q 046115 139 FQSLA 143 (505)
Q Consensus 139 f~~~~ 143 (505)
+....
T Consensus 207 l~~Rl 211 (318)
T 3te6_A 207 IITRL 211 (318)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97765
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.87 E-value=0.00011 Score=69.48 Aligned_cols=102 Identities=7% Similarity=-0.016 Sum_probs=68.9
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++.++|+|+++.........+...+.....++.+++||.... +.. .......+.+.+++.++..+++...+...+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 5678999999976554445556666666566778888876643 211 1233458999999999999999876643222
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 177 (505)
.-.++.+..+++.++|.+..+....
T Consensus 180 ---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 180 ---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp ---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1124567889999999997654433
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.85 E-value=3.3e-05 Score=76.61 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=89.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC--ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE--KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+|||+||+.+++ .....+. .+++++.. .+...+...+... . ...+...+..+..+|+
T Consensus 138 p~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~----~~~~~~~~~~~~~vL~ 199 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG------K----LNEFREKYRKKVDILL 199 (440)
T ss_dssp SSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------C----HHHHHHHHTTTCSEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------c----HHHHHHHhcCCCCEEE
Confidence 479999999999998 5555442 24456543 2334444444311 1 1123333443567999
Q ss_pred EeCCCCCCc--cChhHHHHhhcC-CCCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCC
Q 046115 79 LDDVWNEDY--YKWEPFYKCLKN-SLHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISG 146 (505)
Q Consensus 79 lDdv~~~~~--~~~~~~~~~~~~-~~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 146 (505)
+||++.... ...+.+...+.. ...+..|++||... .+...+.....+.+++++.++-.+++...+...
T Consensus 200 IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~ 279 (440)
T 2z4s_A 200 IDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE 279 (440)
T ss_dssp EECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 999965432 122334433322 23567899988762 222223333578899999999999998776322
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 147 KTIGKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
+. .-+ ++++..|++.+.|.+-.+..+
T Consensus 280 ~~-~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 280 HG-ELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp TC-CCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred CC-CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 21 111 244677888888888655443
No 166
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=2.8e-05 Score=74.11 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccchh-ccccccCc-eeecCCCccccccc-ccccCCccC
Q 046115 412 LLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPRG-IGKLRKLM-YLHNEDTGCLRYLP-AGIGELIRL 487 (505)
Q Consensus 412 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~p-~~i~~l~~L 487 (505)
+++|+.+++++|. +..+|. .+..+.+|+.+++.+| +..++.. +.++++|+ .+.+..+ +..++ ..|.+|++|
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT--CCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc--ceEEchhhhhCCccC
Confidence 4566666666655 555554 3455666666666653 4555443 55566666 6666552 23332 345666666
Q ss_pred Cccce
Q 046115 488 RRVRE 492 (505)
Q Consensus 488 ~~L~~ 492 (505)
+.+.+
T Consensus 300 ~~l~l 304 (329)
T 3sb4_A 300 RYVLA 304 (329)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 55543
No 167
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=4.2e-05 Score=72.93 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=88.3
Q ss_pred CCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccCc-cccCCCCcceeeccCCccccccch-h
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIPT-NIEKLLHLKYLNLKGQKKIEKLPE-T 432 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~ 432 (505)
..++..+.+.++-... ........+.+|+.++|. ++.+..+|. .|..+.+|+.+++..| +..++. .
T Consensus 201 ~~~~~~l~~~~~l~~~---~~~~l~~~~~~L~~l~L~-------~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a 268 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNA---DFKLIRDYMPNLVSLDIS-------KTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV 268 (329)
T ss_dssp GGGCSEEEEEECCCHH---HHHHHHHHCTTCCEEECT-------TBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTT
T ss_pred ccccceEEEeeeecHH---HHHHHHHhcCCCeEEECC-------CCCcceecHhhhhCCCCCCEEECCcc--cceehHHH
Confidence 3455555555542211 122222347899999998 666777765 4788999999999986 677765 5
Q ss_pred hhcCCCCc-EEecCCCcCccccch-hccccccCceeecCCCccccccc-ccccCCccCCccc
Q 046115 433 LCELYNLE-RLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVR 491 (505)
Q Consensus 433 ~~~l~~L~-~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~ 491 (505)
+..+.+|+ .+++.+ . +..+++ .+.++++|+.+++.+|. +..++ ..|.++++|+.+.
T Consensus 269 F~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred hhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 78999999 999998 4 777764 58999999999998887 44554 4689999998764
No 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=2.8e-05 Score=67.27 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=81.1
Q ss_pred CCCCCCCceEEEecCC-Ccccc-ccchhHHhhcCcccceEEecccccCCccccccc-----cCccccCCCCcceeeccCC
Q 046115 351 NVTGLRGLRSLLVKSD-EYSWS-SEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-----IPTNIEKLLHLKYLNLKGQ 423 (505)
Q Consensus 351 ~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~p~~~~~l~~L~~L~l~~~ 423 (505)
.+...+.|+.|++++| .+... ...+...+...++|++|+|+ ++.++. +...+...++|++|+|++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-------~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-------CCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3446789999999998 76432 11245556777889999998 444432 3444566688999999999
Q ss_pred ccccc-----cchhhhcCCCCcEEec--CCCcCccc----cchhccccccCceeecCCCcc
Q 046115 424 KKIEK-----LPETLCELYNLERLNV--DDCQNLRE----LPRGIGKLRKLMYLHNEDTGC 473 (505)
Q Consensus 424 ~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 473 (505)
. ++. +...+...++|+.|+| ++|..... +-..+...++|++|++++|..
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 8 543 4566777888999999 77773222 344566668899999999863
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.76 E-value=0.00015 Score=68.80 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=86.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ .... ..+++++.......++ ...+ ...+ .+..+|++|
T Consensus 46 ~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l----~~~l------------------~~~~-~~~~~l~lD 97 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDL----AAIL------------------ANSL-EEGDILFID 97 (324)
T ss_dssp CTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHH----HHHH------------------TTTC-CTTCEEEET
T ss_pred CCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHH----HHHH------------------HHhc-cCCCEEEEE
Confidence 479999999999988 3322 2234544332222111 1111 1111 245689999
Q ss_pred CCCCCCccChhHHHHhhcCCC------------------CCcEEEEEeCchH-HHHHh-CCc-ceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDYYKWEPFYKCLKNSL------------------HESKILITTRKET-VARIM-GST-HVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~------------------~~~~iLiTtr~~~-~~~~~-~~~-~~~~l~~l~~~ea~~Lf 139 (505)
++..........+...+.... .+..++.||.... +...+ ... ..+.+.+++.+|...++
T Consensus 98 Ei~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l 177 (324)
T 1hqc_A 98 EIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGV 177 (324)
T ss_dssp TTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHH
T ss_pred CCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHH
Confidence 997755434444444443321 2345666665432 11111 122 47899999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLL 180 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 180 (505)
...+...+. .-.++++..+++.+.|.|..+..+...+
T Consensus 178 ~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 178 MRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 877643222 1224668889999999998877766554
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.75 E-value=0.00036 Score=69.05 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=82.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHH-HcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEE-CVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~r~Llvl 79 (505)
.+|+||||||+.+++ .....| +.++.........+.+ ...... ...+++.+|++
T Consensus 58 ppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~ir~~------------------~~~a~~~~~~~~~~iLfI 112 (447)
T 3pvs_A 58 PPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKEIREA------------------IERARQNRNAGRRTILFV 112 (447)
T ss_dssp STTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHHHHHH------------------HHHHHHHHHTTCCEEEEE
T ss_pred CCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHHHHHH------------------HHHHHHhhhcCCCcEEEE
Confidence 479999999999998 443332 2222211111111111 111111 12457889999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH--H-HHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCC---CCCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET--V-ARIMGSTHVISVNVLSEMECWSVFQSLAISGKTI---GKRE 153 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~--~-~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~---~~~~ 153 (505)
|++........+.+...+.. +.-.-|..||.++. + ........++.+.+++.++...++.......... ....
T Consensus 113 DEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~ 191 (447)
T 3pvs_A 113 DEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIV 191 (447)
T ss_dssp ETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEE
T ss_pred eChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCc
Confidence 99977655455566666654 22223334555542 1 1222345588899999999999998776431110 1112
Q ss_pred hHHHHHHHHHHHcCCChHHHHHH
Q 046115 154 NLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 154 ~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
-.+++...+++.++|.+-.+..+
T Consensus 192 i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 192 LPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Confidence 23567788888899988654433
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=2.6e-05 Score=66.02 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred CcccceEEecccccCCccccccc-cCccccCCCCcceeeccCCcccccc-chhhhcC----CCCcEEecCCCcCcccc-c
Q 046115 382 LTCLRALELQVRESWPRNNLIKE-IPTNIEKLLHLKYLNLKGQKKIEKL-PETLCEL----YNLERLNVDDCQNLREL-P 454 (505)
Q Consensus 382 l~~L~~L~l~~~~~~~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~~~~l-p 454 (505)
-.+|+.|+++ ++.+.. --..+..+++|+.|+|++|..++.- -..++.+ ++|+.|+|++|..+..- -
T Consensus 60 ~~~L~~LDLs-------~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 60 KYKIQAIDAT-------DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCEEEEEEE-------SCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CceEeEEeCc-------CCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 3579999999 333332 2344678999999999999866632 2335554 47999999999866542 1
Q ss_pred hhccccccCceeecCCCcccc
Q 046115 455 RGIGKLRKLMYLHNEDTGCLR 475 (505)
Q Consensus 455 ~~~~~l~~L~~L~l~~~~~~~ 475 (505)
..+..+++|++|++++|..+.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 246788999999999997443
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.58 E-value=0.0027 Score=60.43 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=82.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ ..... .+.+++...... ......+. . ..+..+|++|
T Consensus 63 ~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~----------------------~~~~~~~~-~-~~~~~vl~lD 113 (338)
T 3pfi_A 63 PAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKS----------------------GDLAAILT-N-LSEGDILFID 113 (338)
T ss_dssp STTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSH----------------------HHHHHHHH-T-CCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHH--HhCCC---eEEecchhccch----------------------hHHHHHHH-h-ccCCCEEEEe
Confidence 479999999999987 43322 223333222111 11111111 1 2355789999
Q ss_pred CCCCCCccChhHHHHhhcCCC------------------CCcEEEEEeCchH-HHHH-hCCc-ceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDYYKWEPFYKCLKNSL------------------HESKILITTRKET-VARI-MGST-HVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~------------------~~~~iLiTtr~~~-~~~~-~~~~-~~~~l~~l~~~ea~~Lf 139 (505)
++..........+...+.... ++..++.+|.... +... .... ..+.+.+++.++...++
T Consensus 114 Ei~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 114 EIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp TGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 997655444445555444322 1245555555422 1111 1222 57899999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIAS 178 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 178 (505)
...+..... .-.++++..+++.+.|.|-.+..+..
T Consensus 194 ~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 194 QKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp HHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 876643221 12356678888999999965554433
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.55 E-value=0.00092 Score=63.35 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=80.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ .....-..++++++. .....+...+.. ..... +..... +..+|++|
T Consensus 45 ~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~------~~~~~~~~~~~~------~~~~~----~~~~~~-~~~vL~iD 105 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD------DFAQAMVEHLKK------GTINE----FRNMYK-SVDLLLLD 105 (324)
T ss_dssp SSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH------HHHHHHHHHHHH------TCHHH----HHHHHH-TCSEEEEE
T ss_pred CCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH------HHHHHHHHHHHc------CcHHH----HHHHhc-CCCEEEEc
Confidence 479999999999998 443322234566543 233333333320 01111 122221 35699999
Q ss_pred CCCCCCc--cChhHHHHhhcC-CCCCcEEEEEeCch---------HHHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCC
Q 046115 81 DVWNEDY--YKWEPFYKCLKN-SLHESKILITTRKE---------TVARIMGSTHVISVNVLSEMECWSVFQSLAISGKT 148 (505)
Q Consensus 81 dv~~~~~--~~~~~~~~~~~~-~~~~~~iLiTtr~~---------~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 148 (505)
+++.... ...+.+...+.. ...+..|++||... .+...+.....+.+++ +.++..+++...+...+.
T Consensus 106 Ei~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~ 184 (324)
T 1l8q_A 106 DVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL 184 (324)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC
T ss_pred CcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC
Confidence 9965432 122333333321 12455788887642 2222333335789999 999999999877643222
Q ss_pred CCCCchHHHHHHHHHHHcCCChHH
Q 046115 149 IGKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
. -.++++..+++.+ |..-.
T Consensus 185 -~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 185 -E---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp -C---CCHHHHHHHHHHC-SSHHH
T ss_pred -C---CCHHHHHHHHHhC-CCHHH
Confidence 1 1245677888888 76643
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00038 Score=66.97 Aligned_cols=103 Identities=7% Similarity=0.089 Sum_probs=67.0
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HH-HHhCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VA-RIMGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~-~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
+++-++|+|++..-+......+...+.....++.+|++|.+.. +. ........+.+.+++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3667999999977655455667766666556677888876632 21 112334688999999999999998765322211
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKTIA 177 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 177 (505)
-. .++.+..|++.++|.+-.+..+.
T Consensus 213 ~~---~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LE---TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EC---CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC---cHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 03557788899999886544443
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.52 E-value=0.0015 Score=59.76 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+++ +.... .+.+++..-.+. . ...........+.......+.+|++|
T Consensus 47 ~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~a~~~~~~vl~iD 105 (262)
T 2qz4_A 47 PPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV----------I------GGLGAARVRSLFKEARARAPCIVYID 105 (262)
T ss_dssp CTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS----------S------TTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh----------c------cChhHHHHHHHHHHHHhcCCeEEEEe
Confidence 479999999999998 44322 234444332110 0 01111112222233333457899999
Q ss_pred CCCCCC------------c---cChhHHHHhhcCC--CCCcEEEEEeCchHHHH-Hh-C--C-cceEeCCCCChhhHHHH
Q 046115 81 DVWNED------------Y---YKWEPFYKCLKNS--LHESKILITTRKETVAR-IM-G--S-THVISVNVLSEMECWSV 138 (505)
Q Consensus 81 dv~~~~------------~---~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~~-~--~-~~~~~l~~l~~~ea~~L 138 (505)
+++... . ..+..+...+... ..+..|+.||....... .. . . ...+.++..+.++-.++
T Consensus 106 eid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~i 185 (262)
T 2qz4_A 106 EIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREI 185 (262)
T ss_dssp CC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHH
T ss_pred CcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHH
Confidence 996531 1 1122333333322 23556777776543211 11 1 2 25777889999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
+......... ..........+++.+.|++- .|..+..
T Consensus 186 l~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 186 FEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp HHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9876532222 12222235678888887653 4544443
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.0011 Score=63.71 Aligned_cols=100 Identities=7% Similarity=0.014 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHHH-hCCcceEeCCCCChhhHHHHHHHhhhCCCCC
Q 046115 72 GKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VARI-MGSTHVISVNVLSEMECWSVFQSLAISGKTI 149 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 149 (505)
.++-+|++|++..........+...+.......+++++|.... +... ......+.+.+++.++....+...+...+.
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~- 210 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV- 210 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-
Confidence 3567999999966554445566666665555667777775532 2111 112347889999999999999876543222
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 150 GKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.-.++++..|++.++|.|..+..
T Consensus 211 ---~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 211 ---KCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp ---CCCHHHHHHHHHHTSSCHHHHHH
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11246788999999999876443
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=5.5e-05 Score=64.06 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCC----CCcceeeccCCcccccc
Q 046115 355 LRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKL----LHLKYLNLKGQKKIEKL 429 (505)
Q Consensus 355 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l----~~L~~L~l~~~~~~~~l 429 (505)
-..|+.|+++++.++... +. .+..+++|+.|+|++ +..++.- -..++.+ ++|++|+|++|..++.-
T Consensus 60 ~~~L~~LDLs~~~Itd~G--L~-~L~~~~~L~~L~L~~------C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIG--FD-HMEGLQYVEKIRLCK------CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCCCCGGG--GG-GGTTCSCCCEEEEES------CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCCccHHH--HH-HhcCCCCCCEEEeCC------CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 457999999999875431 33 367899999999993 3334331 1224443 47999999999877632
Q ss_pred -chhhhcCCCCcEEecCCCcCccc
Q 046115 430 -PETLCELYNLERLNVDDCQNLRE 452 (505)
Q Consensus 430 -p~~~~~l~~L~~L~l~~~~~~~~ 452 (505)
-..+..+++|+.|+|++|+.+..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 23478899999999999986665
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.51 E-value=0.00026 Score=68.07 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCccccccccCCCCCCCceEEEecCCCccccccchhHHhh--cCcccceEEecccccCC-ccccccccC
Q 046115 330 KILHLLLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEVLPQLFE--KLTCLRALELQVRESWP-RNNLIKEIP 406 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~-~~~~~~~~p 406 (505)
.++.+.+..+....++. + .+++|+.|.+..+.+... ....+. .+++|+.|+|+...... .+..+..+.
T Consensus 173 ~L~~L~L~g~~~l~l~~-----~-~~~~L~~L~L~~~~l~~~---~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK-----K-PRPNLKSLEIISGGLPDS---VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCCEEEEECCBTCBCCS-----C-BCTTCSEEEEECSBCCHH---HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCcEEEEeCCCCceecc-----c-cCCCCcEEEEecCCCChH---HHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 56666665542211211 2 378899999988775432 112233 68889999885210000 011122222
Q ss_pred ccc--cCCCCcceeeccCCccccccchhhh---cCCCCcEEecCCCcCccc-----cchhccccccCceeecCCCccc
Q 046115 407 TNI--EKLLHLKYLNLKGQKKIEKLPETLC---ELYNLERLNVDDCQNLRE-----LPRGIGKLRKLMYLHNEDTGCL 474 (505)
Q Consensus 407 ~~~--~~l~~L~~L~l~~~~~~~~lp~~~~---~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~ 474 (505)
..+ ..+++|++|+|++|......+..+. .+++|+.|+|+.|. +.. ++..+.++++|+.|++++|...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 222 3578999999998884333333333 47789999998887 443 4555677889999999988644
No 179
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=7.4e-05 Score=64.61 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred hhHHhhcCcccceEEecccccCCccc-cccc-----cCccccCCCCcceeeccCCcccc-----ccchhhhcCCCCcEEe
Q 046115 375 LPQLFEKLTCLRALELQVRESWPRNN-LIKE-----IPTNIEKLLHLKYLNLKGQKKIE-----KLPETLCELYNLERLN 443 (505)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-----~p~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~ 443 (505)
+...+...++|+.|+|+ ++ .++. +...+...++|++|+|++|. ++ .+...+...++|++|+
T Consensus 28 l~~~l~~~~~L~~L~L~-------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCCCEEEec-------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEE
Confidence 55667788999999998 33 4432 44556678899999999999 54 3445566778999999
Q ss_pred cCCCcCccc-----cchhccccccCceeec--CCCccccc----ccccccCCccCCcccee
Q 046115 444 VDDCQNLRE-----LPRGIGKLRKLMYLHN--EDTGCLRY----LPAGIGELIRLRRVREF 493 (505)
Q Consensus 444 l~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~~~ 493 (505)
|++|. +.. +...+...++|++|++ ++|..... +...+...++|+.|++.
T Consensus 100 L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 100 VESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp CCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 99998 543 4556788889999999 88875433 23345555778877763
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.47 E-value=0.00018 Score=69.12 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccc-cCcccc--CCCCcceeeccCCcc---
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-IPTNIE--KLLHLKYLNLKGQKK--- 425 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~p~~~~--~l~~L~~L~l~~~~~--- 425 (505)
+..+++|+.|.+.++.... ++. + .+.+|+.|+|. .+.+.. ....++ .+++|++|+|+.+..
T Consensus 168 l~~~P~L~~L~L~g~~~l~----l~~-~-~~~~L~~L~L~-------~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS----IGK-K-PRPNLKSLEII-------SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB----CCS-C-BCTTCSEEEEE-------CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HhcCCCCcEEEEeCCCCce----ecc-c-cCCCCcEEEEe-------cCCCChHHHHHHHHccCCCCcEEEEeccccccc
Confidence 3467899999999873111 333 3 37899999997 333221 112233 689999999863211
Q ss_pred ----ccccchhh--hcCCCCcEEecCCCcCccccchhc---cccccCceeecCCCccccc----ccccccCCccCCccce
Q 046115 426 ----IEKLPETL--CELYNLERLNVDDCQNLRELPRGI---GKLRKLMYLHNEDTGCLRY----LPAGIGELIRLRRVRE 492 (505)
Q Consensus 426 ----~~~lp~~~--~~l~~L~~L~l~~~~~~~~lp~~~---~~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~~ 492 (505)
+..+...+ ..+++|+.|+|++|......+..+ ..+++|++|+++.|..... ++..+.++++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 22222223 357899999999988443333333 3688999999999975442 4445566778888776
Q ss_pred e
Q 046115 493 F 493 (505)
Q Consensus 493 ~ 493 (505)
.
T Consensus 315 ~ 315 (362)
T 2ra8_A 315 K 315 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.0004 Score=59.94 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=38.3
Q ss_pred CCceEEEEEeCCCCCC-------ccChhHHHHhhcCCCCCcEEEEEeCchHHHH-------HhCCcceEeCCCCChhhHH
Q 046115 71 AGKKFLLVLDDVWNED-------YYKWEPFYKCLKNSLHESKILITTRKETVAR-------IMGSTHVISVNVLSEMECW 136 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~-------~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-------~~~~~~~~~l~~l~~~ea~ 136 (505)
.+++.+||+||++... ...+......+...+ +..++.||....... .......+.+..++.++..
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT-SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 3567899999996542 123333333333333 345666666554221 1123336788888888866
Q ss_pred HHH
Q 046115 137 SVF 139 (505)
Q Consensus 137 ~Lf 139 (505)
+++
T Consensus 192 ~il 194 (195)
T 1jbk_A 192 AIL 194 (195)
T ss_dssp TTC
T ss_pred HHh
Confidence 543
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.38 E-value=0.002 Score=62.12 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeC-----------c-h-HH-HHHhCCcceEeCCCCChhhHHHHH
Q 046115 74 KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTR-----------K-E-TV-ARIMGSTHVISVNVLSEMECWSVF 139 (505)
Q Consensus 74 r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr-----------~-~-~~-~~~~~~~~~~~l~~l~~~ea~~Lf 139 (505)
+.+|++|+++.........+...+...... .++++|. + . .+ .........+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 459999999776554555566655554444 3444443 1 1 11 111233446899999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcC-CChHHHHH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCK-GLPLAAKT 175 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~ 175 (505)
...+...+. .-.++++..+++.+. |.|-.+..
T Consensus 269 ~~~~~~~~~----~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 269 RIRCEEEDV----EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHTTC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCC----CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 876543222 122456778888887 77754443
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.0012 Score=66.95 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC-CC-hhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA-KD-LVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~-~~-~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
++|+|||++|+.+++ +. .+ .++.++++...... .....+........ .. ...... .....+++.+|+
T Consensus 85 ppGtGKTtla~~la~--~l--~~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vli 153 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQ--EL--GY-DILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE-----AQNLNGKHFVII 153 (516)
T ss_dssp STTSSHHHHHHHHHH--HT--TC-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC---------CCSSTTSEEEE
T ss_pred CCCCCHHHHHHHHHH--Hc--CC-CEEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh-----hhhccCCCeEEE
Confidence 479999999999998 44 12 23345555444432 22222222211110 00 000000 001235678999
Q ss_pred EeCCCCCCcc---ChhHHHHhhcCCCCCcEEEEEeCchH---HHHHhCCcceEeCCCCChhhHHHHHHHhhhCCCCCCCC
Q 046115 79 LDDVWNEDYY---KWEPFYKCLKNSLHESKILITTRKET---VARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKR 152 (505)
Q Consensus 79 lDdv~~~~~~---~~~~~~~~~~~~~~~~~iLiTtr~~~---~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~ 152 (505)
+|+++..... .+..+...+... +..|++++.+.. +.........+.+++++.++..+.+...+...+....
T Consensus 154 IDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~- 230 (516)
T 1sxj_A 154 MDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD- 230 (516)
T ss_dssp ECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-
T ss_pred EECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 9999654321 124444444432 233555554422 2221122457899999999999988776543222111
Q ss_pred chHHHHHHHHHHHcCCC-hHHHHHHHH
Q 046115 153 ENLEKIGREIVKKCKGL-PLAAKTIAS 178 (505)
Q Consensus 153 ~~~~~~~~~i~~~~~g~-Plal~~~~~ 178 (505)
++++..|++.++|. +-++..+..
T Consensus 231 ---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 231 ---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred ---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 24477888999984 455555433
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.0029 Score=58.62 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ ..... .+.++... +.... ...........+.......+.+|++|
T Consensus 59 ~~GtGKT~la~~la~--~~~~~---~~~v~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iD 117 (285)
T 3h4m_A 59 PPGTGKTLLAKAVAT--ETNAT---FIRVVGSE--------------LVKKF--IGEGASLVKDIFKLAKEKAPSIIFID 117 (285)
T ss_dssp SSSSSHHHHHHHHHH--HTTCE---EEEEEGGG--------------GCCCS--TTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCcHHHHHHHHHH--HhCCC---EEEEehHH--------------HHHhc--cchHHHHHHHHHHHHHHcCCeEEEEE
Confidence 479999999999998 43222 22333221 11000 01111111222222333456899999
Q ss_pred CCCCC-----------Cc---cChhHHHHhhc--CCCCCcEEEEEeCchHHHH-H-hC--C-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNE-----------DY---YKWEPFYKCLK--NSLHESKILITTRKETVAR-I-MG--S-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~-----------~~---~~~~~~~~~~~--~~~~~~~iLiTtr~~~~~~-~-~~--~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.. .. ..+..+...+. ....+..||.||....... . .. . ...+.++..+.++..+++
T Consensus 118 Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il 197 (285)
T 3h4m_A 118 EIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEIL 197 (285)
T ss_dssp TTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHH
T ss_pred CHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHH
Confidence 99441 10 11222222222 2234567788887643211 1 11 2 247889999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKG-LPLAAKTI 176 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 176 (505)
......... ....+ ...+++.+.| .|-.+..+
T Consensus 198 ~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 198 KIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred HHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 877632221 12222 4567777776 45444443
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.25 E-value=0.0038 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=71.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+.+++ .... . .+.++... .+. +. ............+......+..+|++|
T Consensus 72 ~~GtGKT~la~~ia~--~~~~--~-~~~i~~~~-------------~~~-g~-~~~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 72 PPHSGKTALAAKIAE--ESNF--P-FIKICSPD-------------KMI-GF-SETAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp STTSSHHHHHHHHHH--HHTC--S-EEEEECGG-------------GCT-TC-CHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCCcHHHHHHHHHH--HhCC--C-EEEEeCHH-------------Hhc-CC-chHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 479999999999998 3322 2 12233221 111 00 001111222233333445678999999
Q ss_pred CCCCC---------CccCh-hHHHHhhcC---CCCCcEEEEEeCchHHHHH---hCC-cceEeCCCCCh-hhHHHHHHHh
Q 046115 81 DVWNE---------DYYKW-EPFYKCLKN---SLHESKILITTRKETVARI---MGS-THVISVNVLSE-MECWSVFQSL 142 (505)
Q Consensus 81 dv~~~---------~~~~~-~~~~~~~~~---~~~~~~iLiTtr~~~~~~~---~~~-~~~~~l~~l~~-~ea~~Lf~~~ 142 (505)
+++.. ....+ ..+...+.. .+....||.||........ ... ...+.+++++. ++...++...
T Consensus 132 Eid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 132 DIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp CHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred ChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence 98432 11111 223332222 2334456777877654443 122 34678888888 5555555442
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCC
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKG 168 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g 168 (505)
. . . .++.+..+++.+.|
T Consensus 212 ~----~--~---~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 212 G----N--F---KDKERTTIAQQVKG 228 (272)
T ss_dssp T----C--S---CHHHHHHHHHHHTT
T ss_pred C----C--C---CHHHHHHHHHHhcC
Confidence 1 1 1 13457778888877
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.20 E-value=0.0037 Score=59.94 Aligned_cols=153 Identities=11% Similarity=-0.017 Sum_probs=79.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ +.... .+.++.. .+..... . .........+......++.+|+||
T Consensus 92 ppGtGKT~la~ala~--~~~~~---~~~v~~~----------~l~~~~~----g--~~~~~~~~~f~~a~~~~~~vl~iD 150 (355)
T 2qp9_X 92 PPGTGKSYLAKAVAT--EANST---FFSVSSS----------DLVSKWM----G--ESEKLVKQLFAMARENKPSIIFID 150 (355)
T ss_dssp STTSCHHHHHHHHHH--HHTCE---EEEEEHH----------HHHSCC---------CHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCCCcHHHHHHHHHH--HhCCC---EEEeeHH----------HHhhhhc----c--hHHHHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999998 44322 2223321 1111111 0 011111112222223567899999
Q ss_pred CCCCCCcc-----------ChhHHHHhhcC---CCCCcEEEEEeCchHHH-HH-h-CCcceEeCCCCChhhHHHHHHHhh
Q 046115 81 DVWNEDYY-----------KWEPFYKCLKN---SLHESKILITTRKETVA-RI-M-GSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 81 dv~~~~~~-----------~~~~~~~~~~~---~~~~~~iLiTtr~~~~~-~~-~-~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+++..... ....+...+.. ...+..||.||..+... .. . .-...+.++..+.++-.+++....
T Consensus 151 Eid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 151 QVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp CGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred chHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH
Confidence 99653210 02333333332 23455666677654211 11 1 223567888889999999998766
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHH
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCKG-LPLAAKTIAS 178 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 178 (505)
....... .......|++.+.| .+-.|..+..
T Consensus 231 ~~~~~~~----~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 231 GDTPSVL----TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp TTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3222111 13456788888887 4555655554
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.17 E-value=0.0015 Score=61.88 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=77.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHH--cCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEEC--VAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~--l~~~r~Llv 78 (505)
.+|+|||++|+.+++ ... ..++.++.+... ....+..+... ... ..+++.+++
T Consensus 56 ~~G~GKT~la~~la~--~l~---~~~~~i~~~~~~--~~~i~~~~~~~------------------~~~~~~~~~~~vli 110 (324)
T 3u61_B 56 SPGTGKTTVAKALCH--DVN---ADMMFVNGSDCK--IDFVRGPLTNF------------------ASAASFDGRQKVIV 110 (324)
T ss_dssp STTSSHHHHHHHHHH--HTT---EEEEEEETTTCC--HHHHHTHHHHH------------------HHBCCCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHH--HhC---CCEEEEcccccC--HHHHHHHHHHH------------------HhhcccCCCCeEEE
Confidence 379999999999998 442 223455543321 22222222111 111 123678999
Q ss_pred EeCCCCCC-ccChhHHHHhhcCCCCCcEEEEEeCchH-----HHHHhCCcceEeCCCCChhhHHHH-------HHHhhhC
Q 046115 79 LDDVWNED-YYKWEPFYKCLKNSLHESKILITTRKET-----VARIMGSTHVISVNVLSEMECWSV-------FQSLAIS 145 (505)
Q Consensus 79 lDdv~~~~-~~~~~~~~~~~~~~~~~~~iLiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~L-------f~~~~~~ 145 (505)
+|+++... ......+...+.....++.+++||.... +... ...+.+++++.++-.++ +...+..
T Consensus 111 iDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~ 187 (324)
T 3u61_B 111 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRLTEICKH 187 (324)
T ss_dssp EESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99996654 3344555555554445677888887643 2222 34789999998874333 2222211
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCChHH
Q 046115 146 GKTIGKRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~g~Pla 172 (505)
.+. .-++ .+++..+++.++|.+..
T Consensus 188 ~~~-~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 188 EGI-AIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HTC-CBSC--HHHHHHHHHHTCSCTTH
T ss_pred cCC-CCCc--HHHHHHHHHhCCCCHHH
Confidence 111 1111 25677788888777653
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.0061 Score=57.52 Aligned_cols=155 Identities=13% Similarity=0.017 Sum_probs=79.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ +..+ ...+.++...-.. .... .........+......++.+|++|
T Consensus 53 ppGtGKT~la~ala~--~~~~--~~~~~i~~~~l~~--------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iD 112 (322)
T 1xwi_A 53 PPGTGKSYLAKAVAT--EANN--STFFSISSSDLVS--------------KWLG--ESEKLVKNLFQLARENKPSIIFID 112 (322)
T ss_dssp SSSSCHHHHHHHHHH--HTTS--CEEEEEECCSSCC--------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCCccHHHHHHHHHH--HcCC--CcEEEEEhHHHHh--------------hhhh--HHHHHHHHHHHHHHhcCCcEEEee
Confidence 479999999999998 4311 1122333332110 0000 111111122222223567899999
Q ss_pred CCCCCCc------cC-----hhHHHHhhcC---CCCCcEEEEEeCchHHH-HHh--CCcceEeCCCCChhhHHHHHHHhh
Q 046115 81 DVWNEDY------YK-----WEPFYKCLKN---SLHESKILITTRKETVA-RIM--GSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 81 dv~~~~~------~~-----~~~~~~~~~~---~~~~~~iLiTtr~~~~~-~~~--~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+++.... .. ...+...+.. ...+..||.||..+... ... .-...+.++..+.++-.+++....
T Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 113 EIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp TTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH
Confidence 9955310 01 1223333332 23455566667554211 111 223577888889999889998765
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHHHH
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCKGL-PLAAKTIASL 179 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 179 (505)
..... . -.......|++.+.|+ +-.|..+...
T Consensus 193 ~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 193 GTTQN-S---LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred hcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 32221 1 1234577889999887 5556665543
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.13 E-value=0.0035 Score=59.29 Aligned_cols=153 Identities=13% Similarity=0.041 Sum_probs=81.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHH-HHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIE-ECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~r~Llvl 79 (505)
.+|+|||+||+.+++ +....| +.++.. .+.... ....+.....+. .....++.+|++
T Consensus 59 ppGtGKT~la~aia~--~~~~~~---~~v~~~----------~l~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~i 116 (322)
T 3eie_A 59 PPGTGKSYLAKAVAT--EANSTF---FSVSSS----------DLVSKW-------MGESEKLVKQLFAMARENKPSIIFI 116 (322)
T ss_dssp SSSSCHHHHHHHHHH--HHTCEE---EEEEHH----------HHHTTT-------GGGHHHHHHHHHHHHHHTSSEEEEE
T ss_pred CCCCcHHHHHHHHHH--HHCCCE---EEEchH----------HHhhcc-------cchHHHHHHHHHHHHHhcCCeEEEe
Confidence 479999999999998 443222 233321 111111 111222222222 222346689999
Q ss_pred eCCCCCCcc-----------ChhHHHHhhc---CCCCCcEEEEEeCchHHH-HHh--CCcceEeCCCCChhhHHHHHHHh
Q 046115 80 DDVWNEDYY-----------KWEPFYKCLK---NSLHESKILITTRKETVA-RIM--GSTHVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 80 Ddv~~~~~~-----------~~~~~~~~~~---~~~~~~~iLiTtr~~~~~-~~~--~~~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
|+++..... ....+...+. ....+..||.||..+... ..+ .-...+.++..+.++-.+++...
T Consensus 117 DEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 117 DQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp ECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHH
Confidence 999542110 0233333333 234456666677664321 111 11346778888999999999887
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHHH
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKG-LPLAAKTIASL 179 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 179 (505)
........ .......+++.+.| .+-.|..+...
T Consensus 197 ~~~~~~~~----~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 197 VGDTPCVL----TKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp HTTCCCCC----CHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred hccCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 64322111 13456788888887 45555555443
No 190
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.11 E-value=0.0013 Score=64.16 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCcceeeccCCccccccc-hhhhcCCCCcEEecCCCcCcc-----ccch-hccccccCceeecCCCccccccc-ccccCC
Q 046115 413 LHLKYLNLKGQKKIEKLP-ETLCELYNLERLNVDDCQNLR-----ELPR-GIGKLRKLMYLHNEDTGCLRYLP-AGIGEL 484 (505)
Q Consensus 413 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-----~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l 484 (505)
.+|+.+.+. +. +..++ ..+..+.+|+.+.+.++. +. .++. .+..+++|+.+.+..+ +..++ ..|.+|
T Consensus 248 ~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c 322 (401)
T 4fdw_A 248 SGITTVKLP-NG-VTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGN 322 (401)
T ss_dssp CCCSEEEEE-TT-CCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTC
T ss_pred CCccEEEeC-CC-ccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCC
Confidence 445555553 22 34443 345677788888877655 32 3443 4677778888887743 34444 347777
Q ss_pred ccCCccce
Q 046115 485 IRLRRVRE 492 (505)
Q Consensus 485 ~~L~~L~~ 492 (505)
.+|+.+.+
T Consensus 323 ~~L~~l~l 330 (401)
T 4fdw_A 323 RKVTQLTI 330 (401)
T ss_dssp CSCCEEEE
T ss_pred CCccEEEE
Confidence 77777654
No 191
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.10 E-value=0.0036 Score=58.68 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=47.0
Q ss_pred eEEEEEeCCCCC---------CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH--h-C----C-cceEeCCCCChhhHH
Q 046115 74 KFLLVLDDVWNE---------DYYKWEPFYKCLKNSLHESKILITTRKETVARI--M-G----S-THVISVNVLSEMECW 136 (505)
Q Consensus 74 r~LlvlDdv~~~---------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~--~-~----~-~~~~~l~~l~~~ea~ 136 (505)
..+|++|+++.- .......+...+.....+..+|.||........ . + . ...+.+++++.++-.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELF 210 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHH
Confidence 359999999632 333345666666666667788888865432111 0 1 1 257899999999999
Q ss_pred HHHHHhhh
Q 046115 137 SVFQSLAI 144 (505)
Q Consensus 137 ~Lf~~~~~ 144 (505)
+++.....
T Consensus 211 ~il~~~l~ 218 (309)
T 3syl_A 211 EIAGHMLD 218 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99977654
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.005 Score=58.64 Aligned_cols=96 Identities=6% Similarity=0.059 Sum_probs=61.5
Q ss_pred ceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH-HHH-HhCCcceEeCCCCChhhHHHHHHHhhhCCCCCC
Q 046115 73 KKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET-VAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIG 150 (505)
Q Consensus 73 ~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~-~~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~ 150 (505)
.+-++|+|+++.........+...+......+.++++|.... +.. .......+.+.+++.++..+.+...+..... .
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~ 188 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-K 188 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-C
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC-C
Confidence 467899999966554445556666665556667777776532 211 1123447889999999988888766532221 1
Q ss_pred CCchHHHHHHHHHHHcCCChHH
Q 046115 151 KRENLEKIGREIVKKCKGLPLA 172 (505)
Q Consensus 151 ~~~~~~~~~~~i~~~~~g~Pla 172 (505)
-.++.+..+++.++|.+--
T Consensus 189 ---i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 189 ---LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp ---BCHHHHHHHHHHHTTCHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHH
Confidence 1245677888888988764
No 193
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.0014 Score=61.25 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=76.5
Q ss_pred CCCCcHHHHHHHHhcCc-ccccCCCceEEEEeCC-CCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNG-DVERNFEKRTWVCVSE-PFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~-~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
++|+|||++|+.+++.- ..........+++... .... +..+++...+.... ..+++-++|
T Consensus 26 p~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~~~~~p-----------------~~~~~kvvi 87 (305)
T 2gno_A 26 EDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDFLNYSP-----------------ELYTRKYVI 87 (305)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHHHTSCC-----------------SSSSSEEEE
T ss_pred CCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHHHhhcc-----------------ccCCceEEE
Confidence 47999999999998720 0111223344554332 1121 22233333332100 124567899
Q ss_pred EeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch-HHHHHhCCcceEeCCCCChhhHHHHHHHhh
Q 046115 79 LDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE-TVARIMGSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 79 lDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~-~~~~~~~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+|+++.........+...+......+.+|++|.++ .+.+.+... .+++.+++.++..+.+....
T Consensus 88 Idead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 88 VHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred eccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 99998776666777888888776677777766553 343334444 89999999999999997765
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.056 Score=51.96 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHH-HHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQ-HIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~r~Llvl 79 (505)
++|.|||.||+++++ +....| +.++.+. +. .....+.+..+. .....-...+++|++
T Consensus 190 PPGTGKTllAkAiA~--e~~~~f---~~v~~s~--------------l~---sk~vGese~~vr~lF~~Ar~~aP~IIFi 247 (405)
T 4b4t_J 190 PPGTGKTLLARAVAH--HTDCKF---IRVSGAE--------------LV---QKYIGEGSRMVRELFVMAREHAPSIIFM 247 (405)
T ss_dssp CSSSSHHHHHHHHHH--HHTCEE---EEEEGGG--------------GS---CSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHHHHHHHHH--hhCCCc---eEEEhHH--------------hh---ccccchHHHHHHHHHHHHHHhCCceEee
Confidence 589999999999998 443333 2333322 11 000111112222 222222456899999
Q ss_pred eCCCCCCc--------------cChhHHHHhhcCC--CCCcEEEEEeCchHHH-HHh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNEDY--------------YKWEPFYKCLKNS--LHESKILITTRKETVA-RIM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~~--------------~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~-~~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++.... ..+..++..+... ..+..||.||..++.. ..+ +. ...+.++..+.++-.++
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~I 327 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEI 327 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHH
Confidence 99854210 0123344444432 3455667777764331 111 22 46888998898888889
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|+.+.-.-.. ....+ ...+++.+.|+.
T Consensus 328 l~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 328 LRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred HHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 8776532221 22223 456777887754
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.89 E-value=0.00087 Score=58.64 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ ....+...++|+++. .+...+...+... ........+.. .-+||||
T Consensus 62 ~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~~~~~-----~~~lilD 122 (202)
T 2w58_A 62 SFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQDQ------TMNEKLDYIKK-----VPVLMLD 122 (202)
T ss_dssp STTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC---C------CCHHHHHHHHH-----SSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhccc------hHHHHHHHhcC-----CCEEEEc
Confidence 479999999999998 554444456677653 3444444333211 11222222221 1399999
Q ss_pred CCCCCCccCh--hHHHH-hhcCC-CCCcEEEEEeCc
Q 046115 81 DVWNEDYYKW--EPFYK-CLKNS-LHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~--~~~~~-~~~~~-~~~~~iLiTtr~ 112 (505)
|++......| ..+.. .+... ..+.++|+||..
T Consensus 123 ei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 123 DLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 9965432222 21222 22211 234578888874
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.86 E-value=0.0013 Score=56.26 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.+|+||||||+.+++ ...... ..+++++. .++...+.......... ..... +. +.-+|||
T Consensus 46 ~~G~GKTtL~~~i~~--~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~----~~-~~~llil 106 (180)
T 3ec2_A 46 SPGVGKTHLAVATLK--AIYEKKGIRGYFFDT------KDLIFRLKHLMDEGKDT------KFLKT----VL-NSPVLVL 106 (180)
T ss_dssp SSSSSHHHHHHHHHH--HHHHHSCCCCCEEEH------HHHHHHHHHHHHHTCCS------HHHHH----HH-TCSEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHHcCCeEEEEEH------HHHHHHHHHHhcCchHH------HHHHH----hc-CCCEEEE
Confidence 479999999999998 443111 12334442 33444443333211111 11111 21 3458999
Q ss_pred eCCCCCCccCh--hHHHHhhcCC-CCCcEEEEEeCc
Q 046115 80 DDVWNEDYYKW--EPFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~--~~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
|++.......+ ..+...+... ..+..+|+||..
T Consensus 107 DE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 107 DDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99974322222 2233333222 256788888874
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.74 E-value=0.027 Score=52.25 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=76.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHH-HHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQ-HIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~r~Llvl 79 (505)
++|+|||++|+.++. ..... .+.+++..-.. .... +.+.... .+.......+.+|++
T Consensus 62 p~GtGKT~la~~la~--~~~~~---~~~i~~~~l~~--------------~~~~---~~~~~~~~~~~~~~~~~~~vl~i 119 (297)
T 3b9p_A 62 PPGNGKTLLARAVAT--ECSAT---FLNISAASLTS--------------KYVG---DGEKLVRALFAVARHMQPSIIFI 119 (297)
T ss_dssp SSSSCHHHHHHHHHH--HTTCE---EEEEESTTTSS--------------SSCS---CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHhh--------------cccc---hHHHHHHHHHHHHHHcCCcEEEe
Confidence 479999999999998 43222 23344432110 0011 1122221 222222346789999
Q ss_pred eCCCCCCcc-----------ChhHHHHhhcCC-----CCCcEEEEEeCchH-----HHHHhCCcceEeCCCCChhhHHHH
Q 046115 80 DDVWNEDYY-----------KWEPFYKCLKNS-----LHESKILITTRKET-----VARIMGSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~~~-----------~~~~~~~~~~~~-----~~~~~iLiTtr~~~-----~~~~~~~~~~~~l~~l~~~ea~~L 138 (505)
|++...... ....+...+... +.+..|+.||..+. +...+ ...+.++..+.++...+
T Consensus 120 DEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~i 197 (297)
T 3b9p_A 120 DEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELL 197 (297)
T ss_dssp ETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHH
T ss_pred ccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHH
Confidence 999542110 011222222211 13456677777642 22222 24677777788888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
+......... .-..+.+..+++.+.|++- +|..+..
T Consensus 198 l~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 198 LNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8766532111 1113457788888888775 5544443
No 198
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.72 E-value=0.00099 Score=55.07 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=43.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
..|+|||+|++.++. .....=..+++++....... ..+ .+.-+||+|
T Consensus 44 ~~G~GKTtL~~~i~~--~~~~~g~~~~~~~~~~~~~~------------------------------~~~-~~~~lLilD 90 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVA--QALEAGKNAAYIDAASMPLT------------------------------DAA-FEAEYLAVD 90 (149)
T ss_dssp SSTTTTCHHHHHHHH--HHHTTTCCEEEEETTTSCCC------------------------------GGG-GGCSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCcEEEEcHHHhhHH------------------------------HHH-hCCCEEEEe
Confidence 379999999999998 33322112567765442211 011 234588999
Q ss_pred CCCCCCccChhHHHHhhcCC-CCCc-EEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNS-LHES-KILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~-~~~~-~iLiTtr~ 112 (505)
++........+.+...+... ..|. .+|+||+.
T Consensus 91 E~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 91 QVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp STTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 99664432233333333321 1233 48888874
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.71 E-value=0.012 Score=56.53 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=79.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHH-HHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHI-EECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l-~~~l~~~r~Llvl 79 (505)
.+|+|||+||+.+++ +... ..+.+++..-.. .. ..........+ ......++.+|+|
T Consensus 125 ppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~--------------~~---~g~~~~~~~~~~~~a~~~~~~vl~i 182 (357)
T 3d8b_A 125 PPGTGKTLIGKCIAS--QSGA---TFFSISASSLTS--------------KW---VGEGEKMVRALFAVARCQQPAVIFI 182 (357)
T ss_dssp STTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCC--------------SS---TTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhc--------------cc---cchHHHHHHHHHHHHHhcCCeEEEE
Confidence 479999999999998 4322 223444432110 00 00111112222 2222346789999
Q ss_pred eCCCCCCc-----------cChhHHHHhhcC----CCCCcEEEEEeCchH-HHHH-hCC-cceEeCCCCChhhHHHHHHH
Q 046115 80 DDVWNEDY-----------YKWEPFYKCLKN----SLHESKILITTRKET-VARI-MGS-THVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 80 Ddv~~~~~-----------~~~~~~~~~~~~----~~~~~~iLiTtr~~~-~~~~-~~~-~~~~~l~~l~~~ea~~Lf~~ 141 (505)
|+++.... .....+...+.. ...+..||.||.... +... ... ...+.+...+.++..+++..
T Consensus 183 DEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~ 262 (357)
T 3d8b_A 183 DEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVIN 262 (357)
T ss_dssp ETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHH
T ss_pred eCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHH
Confidence 99843210 012233433332 123455665676532 2111 122 24678888899998888877
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHHH
Q 046115 142 LAISGKTIGKRENLEKIGREIVKKCKG-LPLAAKTIASL 179 (505)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 179 (505)
.+..... . -..+.+..+++.+.| .+-.|..+...
T Consensus 263 ~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 263 LMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6532221 1 113557788888888 55566655443
No 200
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.71 E-value=0.0051 Score=60.01 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred cccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCc
Q 046115 408 NIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 408 ~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 472 (505)
.|..+++|+.+.+.+ . +..++. .+..+.+|+.+.|..+ +..++. .+.++ +|+.+.+.+|.
T Consensus 295 aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred HhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 345566666666652 2 444433 3455666666666442 444443 35555 66666666664
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.69 E-value=0.0031 Score=51.75 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=48.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+.+++. ....-...+ +++....+. .... ..+... ....|++|
T Consensus 32 ~~GtGKt~lA~~i~~~--~~~~~~~~v-~~~~~~~~~-------------------~~~~---~~~~~a---~~g~l~ld 83 (145)
T 3n70_A 32 APGTGRMTGARYLHQF--GRNAQGEFV-YRELTPDNA-------------------PQLN---DFIALA---QGGTLVLS 83 (145)
T ss_dssp STTSSHHHHHHHHHHS--STTTTSCCE-EEECCTTTS-------------------SCHH---HHHHHH---TTSCEEEE
T ss_pred CCCCCHHHHHHHHHHh--CCccCCCEE-EECCCCCcc-------------------hhhh---cHHHHc---CCcEEEEc
Confidence 3799999999999883 222112233 666653322 0111 111111 22478999
Q ss_pred CCCCCCccChhHHHHhhcCCCCCcEEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
+++.-.......+...+.......++|.||..
T Consensus 84 ei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 84 HPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 99776655556667666555556778777764
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.64 E-value=0.015 Score=54.22 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ ..... ++.+. ..++.... .+ .. ... ....+.......+.+|++|
T Consensus 57 p~GtGKT~la~ala~--~~~~~-----~i~v~----~~~l~~~~---~g-~~---~~~---~~~~f~~a~~~~p~il~iD 115 (301)
T 3cf0_A 57 PPGCGKTLLAKAIAN--ECQAN-----FISIK----GPELLTMW---FG-ES---EAN---VREIFDKARQAAPCVLFFD 115 (301)
T ss_dssp SSSSSHHHHHHHHHH--HTTCE-----EEEEC----HHHHHHHH---HT-TC---TTH---HHHHHHHHHHTCSEEEEEC
T ss_pred CCCcCHHHHHHHHHH--HhCCC-----EEEEE----hHHHHhhh---cC-ch---HHH---HHHHHHHHHhcCCeEEEEE
Confidence 479999999999998 44322 22222 11222221 11 11 111 1222222333467899999
Q ss_pred CCCCCC--------------ccChhHHHHhhcC--CCCCcEEEEEeCchHHH-HH-hC--C-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED--------------YYKWEPFYKCLKN--SLHESKILITTRKETVA-RI-MG--S-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~--------------~~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~-~~-~~--~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++... ......+...+.. ...+..||.||..+... .. .. . ...+.++..+.++-.+++
T Consensus 116 Eid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 195 (301)
T 3cf0_A 116 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 195 (301)
T ss_dssp STTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred ChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHH
Confidence 995310 0012344444432 23456677777765322 11 11 2 347889999999988888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCChH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLPL 171 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 171 (505)
......... ....+ ...+++.+.|+|=
T Consensus 196 ~~~l~~~~~-~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 196 KANLRKSPV-AKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp HHHHTTSCB-CSSCC----HHHHHHTCSSCCH
T ss_pred HHHHccCCC-Cccch----HHHHHHHcCCCCH
Confidence 776532221 22222 3356667777764
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.62 E-value=0.013 Score=57.89 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=78.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.+++ +.. +.-++.+.... +..... +.. ......... ......+.+|+||
T Consensus 175 ppGtGKT~lA~aia~--~~~----~~~~~~v~~~~--------l~~~~~-g~~--~~~~~~~f~---~a~~~~~~vl~iD 234 (444)
T 2zan_A 175 PPGTGKSYLAKAVAT--EAN----NSTFFSISSSD--------LVSKWL-GES--EKLVKNLFQ---LARENKPSIIFID 234 (444)
T ss_dssp STTSSHHHHHHHHHH--HCC----SSEEEEECCC------------------C--CCTHHHHHH---HHHHSCSEEEEES
T ss_pred CCCCCHHHHHHHHHH--HcC----CCCEEEEeHHH--------HHhhhc-chH--HHHHHHHHH---HHHHcCCeEEEEe
Confidence 479999999999998 431 12233333221 111111 001 111222221 1223467899999
Q ss_pred CCCCCCc-------cCh----hHHHHhhcC---CCCCcEEEEEeCchHHH-HH-hCC-cceEeCCCCChhhHHHHHHHhh
Q 046115 81 DVWNEDY-------YKW----EPFYKCLKN---SLHESKILITTRKETVA-RI-MGS-THVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 81 dv~~~~~-------~~~----~~~~~~~~~---~~~~~~iLiTtr~~~~~-~~-~~~-~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
+++.... ... ..+...+.. ...+..||.||..+... .. ... ...+.++..+.++-..++....
T Consensus 235 Eid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 235 EIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp CTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred chHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH
Confidence 9965310 011 223332322 23456677677654321 11 122 2467788888888888887765
Q ss_pred hCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHHH
Q 046115 144 ISGKTIGKRENLEKIGREIVKKCKGL-PLAAKTIAS 178 (505)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 178 (505)
..... .-.......|++.+.|+ +-.|..+..
T Consensus 315 ~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 315 GSTQN----SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp TTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 32211 11234567888889884 555555544
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.51 E-value=0.0077 Score=53.15 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCC-----------CCCCChhcHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTP-----------GSAKDLVEFQSLMQHIEEC 69 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~l~~~ 69 (505)
.+|+||||||..++. ..-..++|++.....+...+. .+...++. .......+..+....++..
T Consensus 28 ~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (220)
T 2cvh_A 28 PYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKT 101 (220)
T ss_dssp STTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHH
Confidence 479999999999987 122467788877655554433 23333221 1111222223344555555
Q ss_pred cCCceEEEEEeCCCC
Q 046115 70 VAGKKFLLVLDDVWN 84 (505)
Q Consensus 70 l~~~r~LlvlDdv~~ 84 (505)
...+.-++|+|.+..
T Consensus 102 ~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 102 VDSNFALVVVDSITA 116 (220)
T ss_dssp CCTTEEEEEEECCCC
T ss_pred hhcCCCEEEEcCcHH
Confidence 544577999999854
No 205
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.015 Score=56.73 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||.||+++++ +....| +.++.+.-.+ ...........+.....-...+++|++|
T Consensus 214 PPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiD 272 (428)
T 4b4t_K 214 PPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH----------------KYLGEGPRMVRDVFRLARENAPSIIFID 272 (428)
T ss_dssp CTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc----------------cccchhHHHHHHHHHHHHHcCCCeeech
Confidence 589999999999998 443332 2344332110 0001111112222222224568999999
Q ss_pred CCCC--------C--Cc----cChhHHHHhhcC--CCCCcEEEEEeCchHH-HHHh---CC-cceEeCCCCCh-hhHHHH
Q 046115 81 DVWN--------E--DY----YKWEPFYKCLKN--SLHESKILITTRKETV-ARIM---GS-THVISVNVLSE-MECWSV 138 (505)
Q Consensus 81 dv~~--------~--~~----~~~~~~~~~~~~--~~~~~~iLiTtr~~~~-~~~~---~~-~~~~~l~~l~~-~ea~~L 138 (505)
+++. . .. ..+..++..+.. ...+..||.||..++. ...+ +. ...+.++.+.. ++-..+
T Consensus 273 EiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 273 EVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLI 352 (428)
T ss_dssp CTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHH
T ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHH
Confidence 9832 0 00 012334444442 2345567778876432 1111 22 34677766644 444556
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|..+.-. .......+ ...+++.+.|+-
T Consensus 353 l~~~~~~-~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 353 FGTIASK-MSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHHHHHS-SCBCTTCC----HHHHHHHTTTCC
T ss_pred HHHHhcC-CCCCcccC----HHHHHHHCCCCC
Confidence 6555422 22122223 456777777654
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.47 E-value=0.25 Score=46.56 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=34.9
Q ss_pred eEeCCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 046115 124 VISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKT 175 (505)
Q Consensus 124 ~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 175 (505)
.+.+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|-.+..
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHH
Confidence 5789999999999999877532221 22356788999999999965433
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.013 Score=54.90 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhc-HHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVE-FQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~r~Llvl 79 (505)
.+|+|||++|+.++. .....-...+.++++...... ....+ ++......... .......+. .....+++|
T Consensus 55 ~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~l 125 (311)
T 4fcw_A 55 PTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILF 125 (311)
T ss_dssp CSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEE
T ss_pred CCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHHh---cCCCCccccccccchHHHHHH---hCCCeEEEE
Confidence 479999999999998 443332345566665543321 11222 22111100000 011112222 123469999
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|++..........+...+.... ..+.+|.||..
T Consensus 126 DEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 126 DAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp ETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred eChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 9997665544555555554321 23447777765
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.13 E-value=0.033 Score=55.56 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=78.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+.+++ +.... .+.+++. .+...+. ..........+.....+++.+|+||
T Consensus 246 ppGtGKT~lAraia~--~~~~~---fv~vn~~----------~l~~~~~------g~~~~~~~~~f~~A~~~~p~iLfLD 304 (489)
T 3hu3_A 246 PPGTGKTLIARAVAN--ETGAF---FFLINGP----------EIMSKLA------GESESNLRKAFEEAEKNAPAIIFID 304 (489)
T ss_dssp STTSSHHHHHHHHHH--HCSSE---EEEEEHH----------HHHTSCT------THHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCCCHHHHHHHHHH--HhCCC---EEEEEch----------Hhhhhhc------chhHHHHHHHHHHHHhcCCcEEEec
Confidence 479999999999988 43222 2334421 1111111 1112222333334445567899999
Q ss_pred CCCCCCc-----------cChhHHHHhhcC--CCCCcEEEEEeCchHH-HHHh---CC-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNEDY-----------YKWEPFYKCLKN--SLHESKILITTRKETV-ARIM---GS-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~~-----------~~~~~~~~~~~~--~~~~~~iLiTtr~~~~-~~~~---~~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
+++.... .....+...+.. ...+..||.||..... .... +. ...+.+...+.++-.+++...
T Consensus 305 EId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~ 384 (489)
T 3hu3_A 305 ELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (489)
T ss_dssp SHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred chhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHH
Confidence 9832110 112334444442 2334556667765432 2111 12 346889999999999999877
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGL-PLAAKTI 176 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 176 (505)
...... ..... ...+++.+.|+ +-.|..+
T Consensus 385 ~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 385 TKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp TTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 532221 12222 34566777664 4444444
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.043 Score=53.57 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=74.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||.||+++++ +....| +.++.+. +..... ..............-...+++|++|
T Consensus 251 PPGTGKTlLAkAiA~--e~~~~f---i~vs~s~--------------L~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiD 309 (467)
T 4b4t_H 251 PPGTGKTLCARAVAN--RTDATF---IRVIGSE--------------LVQKYV--GEGARMVRELFEMARTKKACIIFFD 309 (467)
T ss_dssp CTTSSHHHHHHHHHH--HHTCEE---EEEEGGG--------------GCCCSS--SHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCcHHHHHHHHHh--ccCCCe---EEEEhHH--------------hhcccC--CHHHHHHHHHHHHHHhcCCceEeec
Confidence 589999999999998 443332 2333322 110000 1111111222222234568999999
Q ss_pred CCCCCCc--------------cChhHHHHhhcCC--CCCcEEEEEeCchHH-HHHh---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDY--------------YKWEPFYKCLKNS--LHESKILITTRKETV-ARIM---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~--------------~~~~~~~~~~~~~--~~~~~iLiTtr~~~~-~~~~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.... .....++..+... ..+..||.||..+.. ...+ +. ...+.++..+.++-.++|
T Consensus 310 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Il 389 (467)
T 4b4t_H 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIF 389 (467)
T ss_dssp CCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHH
T ss_pred ccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHH
Confidence 9854210 0112233333332 334556677765432 1111 22 457888888888888888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
..+...-. .....+ ...|++.+.|+-
T Consensus 390 k~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 390 RIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp HHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred HHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 77653221 122223 356777887754
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.07 E-value=0.097 Score=47.30 Aligned_cols=150 Identities=10% Similarity=0.059 Sum_probs=73.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||+||+.+++ ..... .+.++...-.+ ... ..........+.......+.++++|
T Consensus 53 ~~GtGKT~la~~la~--~~~~~---~~~i~~~~~~~----------~~~------~~~~~~~~~~~~~a~~~~~~il~iD 111 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAG--EAKVP---FFTISGSDFVE----------MFV------GVGASRVRDMFEQAKKAAPCIIFID 111 (257)
T ss_dssp CTTSCHHHHHHHHHH--HHTCC---EEEECSCSSTT----------SCC------CCCHHHHHHHHHHHHTTCSEEEEET
T ss_pred cCCCCHHHHHHHHHH--HcCCC---EEEEeHHHHHH----------Hhh------hhhHHHHHHHHHHHHHcCCeeehhh
Confidence 479999999999998 43222 23343322110 000 0111222223333334567899999
Q ss_pred CCCCCCc--------------cChhHHHHhhcC--CCCCcEEEEEeCchHH-HHHh-C--C-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDY--------------YKWEPFYKCLKN--SLHESKILITTRKETV-ARIM-G--S-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~--------------~~~~~~~~~~~~--~~~~~~iLiTtr~~~~-~~~~-~--~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.... .....+...+.. ...+..||.||..+.. .... . . ...+.++..+.++-.+++
T Consensus 112 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il 191 (257)
T 1lv7_A 112 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191 (257)
T ss_dssp THHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred hhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHH
Confidence 9832110 011223333322 2334567777766532 1111 1 1 346777777888877787
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHH
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKG-LPLAAKTI 176 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 176 (505)
....... ....... ...++..+.| .+--|..+
T Consensus 192 ~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 192 KVHMRRV-PLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp HHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 6654221 1111111 3456677777 56544433
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.044 Score=53.46 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=76.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHH-HHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQ-HIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~r~Llvl 79 (505)
++|.|||.||+++++ +....| +.++.+.- . .......+.... .....-...+++|++
T Consensus 223 PPGtGKTllAkAiA~--e~~~~~---~~v~~s~l--------------~---sk~~Gese~~ir~~F~~A~~~~P~Iifi 280 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAA--TIGANF---IFSPASGI--------------V---DKYIGESARIIREMFAYAKEHEPCIIFM 280 (437)
T ss_dssp CTTSSHHHHHHHHHH--HHTCEE---EEEEGGGT--------------C---CSSSSHHHHHHHHHHHHHHHSCSEEEEE
T ss_pred CCCCcHHHHHHHHHH--HhCCCE---EEEehhhh--------------c---cccchHHHHHHHHHHHHHHhcCCceeee
Confidence 589999999999998 443332 23443321 1 000111111222 222222456899999
Q ss_pred eCCCCCC-------c-------cChhHHHHhhcCC--CCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNED-------Y-------YKWEPFYKCLKNS--LHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~-------~-------~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++..- . ..+..++..+... ..+..||.||..++... .+ +. ...+.++..+.++-.++
T Consensus 281 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~I 360 (437)
T 4b4t_L 281 DEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360 (437)
T ss_dssp ECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHH
T ss_pred ecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHH
Confidence 9985310 0 0122344444432 34567788887654322 11 11 34678888888888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|..+...-.. ....+ ...+++.+.|+.
T Consensus 361 l~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 361 FKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred HHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 8776533222 22223 456777887754
No 212
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.04 E-value=0.081 Score=51.25 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=54.2
Q ss_pred CceEEEEEeCCCCCC-----------ccChhHHHHhhc---C-CCCCcEEEEEeCchHH-HHH-hCCc-ceEeCCCCChh
Q 046115 72 GKKFLLVLDDVWNED-----------YYKWEPFYKCLK---N-SLHESKILITTRKETV-ARI-MGST-HVISVNVLSEM 133 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~-----------~~~~~~~~~~~~---~-~~~~~~iLiTtr~~~~-~~~-~~~~-~~~~l~~l~~~ 133 (505)
..+.+|+||+++... ......+...+. . ......||.||..... ... .... ..+.+...+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 356799999995420 000112222222 1 1234455656655321 111 1222 46788889999
Q ss_pred hHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 046115 134 ECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPL-AAKTIAS 178 (505)
Q Consensus 134 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 178 (505)
+-.+++...+..... .-..+.+..+++.+.|+.- +|..+..
T Consensus 286 ~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 286 TRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999876633221 1123456788888887553 5544433
No 213
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.98 E-value=0.051 Score=50.35 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||+||+.+++
T Consensus 44 ppGtGKT~la~aiA~ 58 (293)
T 3t15_A 44 GKGQGKSFQCELVFR 58 (293)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999998
No 214
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.98 E-value=0.0058 Score=52.41 Aligned_cols=110 Identities=21% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC---CCCHHHHHHHHH---HHcCCCCCCC-------hhcHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE---PFDEFRIARAII---ESLTPGSAKD-------LVEFQSLMQHIEE 68 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~l~---~~l~~~~~~~-------~~~~~~~~~~l~~ 68 (505)
.|.||||.|...+- +..++=-.+.++-+.. ......++..+. ..++.+..-. ............+
T Consensus 37 ~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~~ 114 (196)
T 1g5t_A 37 NGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKR 114 (196)
T ss_dssp SSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHHH
Confidence 58999999977766 3333322344443322 233334444431 0001111101 1122334455555
Q ss_pred HcCCc-eEEEEEeCCCC---CCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 69 CVAGK-KFLLVLDDVWN---EDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 69 ~l~~~-r~LlvlDdv~~---~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
.+.+. -=|||||.+.. -.....+.+...+........|++|+|..
T Consensus 115 ~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 115 MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 66554 45999999832 23446677788787777788999999984
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.96 E-value=0.007 Score=51.63 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||++|+.+++
T Consensus 51 ~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 51 DPGVGKTAIVEGLAI 65 (187)
T ss_dssp CGGGCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.87 E-value=0.11 Score=48.40 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.1
Q ss_pred ceEeCCCCChhhHHHHHHH
Q 046115 123 HVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 123 ~~~~l~~l~~~ea~~Lf~~ 141 (505)
..+.+++++.++..+++..
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 4689999999998888874
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.86 E-value=0.027 Score=51.37 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=48.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+.+++ .....-...+.++++... ...+...+..... +..... .......+.. ...-+|+||
T Consensus 37 ~~GtGKt~la~~i~~--~~~~~~~~~~~v~~~~~~-~~~~~~~l~g~~~-~~~~g~--~~~~~~~l~~---a~~~~l~lD 107 (265)
T 2bjv_A 37 ERGTGKELIASRLHY--LSSRWQGPFISLNCAALN-ENLLDSELFGHEA-GAFTGA--QKRHPGRFER---ADGGTLFLD 107 (265)
T ss_dssp CTTSCHHHHHHHHHH--TSTTTTSCEEEEEGGGSC-HHHHHHHHHCCC------------CCCCHHHH---TTTSEEEEE
T ss_pred CCCCcHHHHHHHHHH--hcCccCCCeEEEecCCCC-hhHHHHHhcCCcc-cccccc--cccccchhhh---cCCcEEEEe
Confidence 379999999999998 332221234456666532 1111112211100 000000 0000001111 123489999
Q ss_pred CCCCCCccChhHHHHhhcCC-----------CCCcEEEEEeCc
Q 046115 81 DVWNEDYYKWEPFYKCLKNS-----------LHESKILITTRK 112 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~-----------~~~~~iLiTtr~ 112 (505)
++..........+...+... ....+||.||..
T Consensus 108 Ei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 108 ELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp SGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred chHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 99776544444555544432 134678888775
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.65 E-value=0.012 Score=63.36 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC-----C-C-ceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-C-
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-----F-E-KRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-A- 71 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-----f-~-~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~- 71 (505)
.+|+|||++|+.+++ .+... . . .+++++++.-.. +. ....+.......+...+ .
T Consensus 199 ~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~--------------g~-~~~g~~~~~l~~~~~~~~~~ 261 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLA--------------GA-KYRGEFEERLKAVIQEVVQS 261 (854)
T ss_dssp CTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC--------------------------CHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhc--------------cC-ccchHHHHHHHHHHHHHHhc
Confidence 479999999999998 44221 1 1 233444322100 00 00112222222222222 2
Q ss_pred CceEEEEEeCCCCCCc-------cChhHHHHhhcCCCCCcEEEEEeCchHHH-----HHh-CCcceEeCCCCChhhHHHH
Q 046115 72 GKKFLLVLDDVWNEDY-------YKWEPFYKCLKNSLHESKILITTRKETVA-----RIM-GSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~-------~~~~~~~~~~~~~~~~~~iLiTtr~~~~~-----~~~-~~~~~~~l~~l~~~ea~~L 138 (505)
+++.+|++|++..-.. ......+..+...+. ..+|.+|...... ... .....+.+++++.++..++
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~-i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~i 340 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE-LRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISI 340 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHHTTC-CCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHH
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC-eEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHH
Confidence 3678999999965320 111222333333333 3455555433221 111 2244688999999999999
Q ss_pred HHHh
Q 046115 139 FQSL 142 (505)
Q Consensus 139 f~~~ 142 (505)
+...
T Consensus 341 L~~~ 344 (854)
T 1qvr_A 341 LRGL 344 (854)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9644
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.036 Score=53.60 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHH-HHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHI-EECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l-~~~l~~~r~Llvl 79 (505)
++|.|||.||+++++ +....| +.++.+. +... ...+.+.....+ ...-...+++|++
T Consensus 224 PPGTGKTlLAkAiA~--e~~~~f---i~v~~s~--------------l~sk---~vGesek~ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 224 APGTGKTLLAKAVAN--QTSATF---LRIVGSE--------------LIQK---YLGDGPRLCRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp STTTTHHHHHHHHHH--HHTCEE---EEEESGG--------------GCCS---SSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCchHHHHHHHHHH--HhCCCE---EEEEHHH--------------hhhc---cCchHHHHHHHHHHHHHhcCCcEEEE
Confidence 589999999999998 443333 2233221 1100 111112222222 2222356899999
Q ss_pred eCCCCCC------c--------cChhHHHHhhcC--CCCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNED------Y--------YKWEPFYKCLKN--SLHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~------~--------~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++... . ..+..++..+.. ...+..||.||..++... .+ +. ...+.++..+.++-.++
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHH
Confidence 9985310 0 012233333332 234556777887654432 11 12 34677888888888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|..+.-.-. .....+ ...+++.+.|+-
T Consensus 362 l~~~l~~~~-l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 362 LGIHTSKMN-LSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HHHHHTTSC-BCSCCC----HHHHHHHCCSCC
T ss_pred HHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 877653222 122223 446777777654
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.55 E-value=0.15 Score=50.46 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=76.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+.++. +.... .+.++.+.-... + ...........+.......+.+|++|
T Consensus 57 ppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~----------~------~g~~~~~~r~lf~~A~~~~p~ILfID 115 (476)
T 2ce7_A 57 PPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL----------F------VGVGAARVRDLFAQAKAHAPCIVFID 115 (476)
T ss_dssp CTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC----------C------TTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH----------H------hcccHHHHHHHHHHHHhcCCCEEEEe
Confidence 479999999999998 43222 223443321110 0 01111222333444445678999999
Q ss_pred CCCCCCc--------------cChhHHHHhhcC--CCCCcEEEEEeCchHHHH-H-h--CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNEDY--------------YKWEPFYKCLKN--SLHESKILITTRKETVAR-I-M--GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~~--------------~~~~~~~~~~~~--~~~~~~iLiTtr~~~~~~-~-~--~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.-.. .....+...+.. ...+..||.||..++... . . +. ...+.++..+.++-.+++
T Consensus 116 Eid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il 195 (476)
T 2ce7_A 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195 (476)
T ss_dssp TGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred chhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHH
Confidence 9954211 112334433332 124566777777654322 1 1 12 237788888888877888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
..+.... ......+ ...+++.+.|+.
T Consensus 196 ~~~~~~~-~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 196 EIHTRNK-PLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHhC-CCcchhh----HHHHHHhcCCCc
Confidence 7665321 1111222 345778888877
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.54 E-value=0.063 Score=50.00 Aligned_cols=129 Identities=10% Similarity=0.053 Sum_probs=60.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHH-HHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQ-SLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~l~~~l~~~r~Llvl 79 (505)
.+|+|||++|+.+++. ....-...+.++++.... .++.. .+............ .....+... ....|+|
T Consensus 33 e~GtGKt~lAr~i~~~--~~~~~~~~v~v~~~~~~~--~l~~~---~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~L 102 (304)
T 1ojl_A 33 DSGTGKELVARALHAC--SARSDRPLVTLNCAALNE--SLLES---ELFGHEKGAFTGADKRREGRFVEA---DGGTLFL 102 (304)
T ss_dssp CTTSCHHHHHHHHHHH--SSCSSSCCCEEECSSCCH--HHHHH---HHTCCCSSCCC---CCCCCHHHHH---TTSEEEE
T ss_pred CCCchHHHHHHHHHHh--CcccCCCeEEEeCCCCCh--HHHHH---HhcCccccccCchhhhhcCHHHhc---CCCEEEE
Confidence 3799999999999872 221111234466654322 22221 12111110000000 000011111 1246899
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCch--H----------HHHHhCCcceEeCCCCC--hhh
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRKE--T----------VARIMGSTHVISVNVLS--EME 134 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~~--~----------~~~~~~~~~~~~l~~l~--~~e 134 (505)
|++..........+...+.... ...+||.||... . +...+. ...+.++++. .+|
T Consensus 103 DEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~ed 181 (304)
T 1ojl_A 103 DEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRRED 181 (304)
T ss_dssp ESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGG
T ss_pred eccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhh
Confidence 9997765444455555554331 346777777653 1 111111 2246788887 455
Q ss_pred HHHHHH
Q 046115 135 CWSVFQ 140 (505)
Q Consensus 135 a~~Lf~ 140 (505)
...++.
T Consensus 182 i~~l~~ 187 (304)
T 1ojl_A 182 IPLLAD 187 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 222
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.50 E-value=0.035 Score=53.92 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=53.4
Q ss_pred hhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccch-
Q 046115 379 FEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR- 455 (505)
Q Consensus 379 ~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~- 455 (505)
+..+.+|+.+.+. ++ +..++ ..+..+.+|+.+++..+ +..++. .+..+.+|+.+.+..+ +..++.
T Consensus 293 F~~~~~L~~i~l~-------~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLL-------DS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp TTTCTTCCEEEEC-------TT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred ccccccccccccc-------cc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence 4445556666654 22 22332 33556666777766532 444432 4566677777776543 455544
Q ss_pred hccccccCceeecCCCcccccccccccCCccCCcc
Q 046115 456 GIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRV 490 (505)
Q Consensus 456 ~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 490 (505)
.+.++++|+.+.+..+ +..+...|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 3666667777766544 23344456666666543
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.033 Score=54.31 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHH-HcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEE-CVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~r~Llvl 79 (505)
++|.|||.||+++++ +....| +.++.+. +.... ....+.....+.. .-...+++|++
T Consensus 223 PPGTGKTllAkAiA~--e~~~~f---~~v~~s~--------------l~~~~---vGese~~ir~lF~~A~~~aP~Iifi 280 (434)
T 4b4t_M 223 PPGTGKTLLARACAA--QTNATF---LKLAAPQ--------------LVQMY---IGEGAKLVRDAFALAKEKAPTIIFI 280 (434)
T ss_dssp CTTSSHHHHHHHHHH--HHTCEE---EEEEGGG--------------GCSSC---SSHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred cCCCCHHHHHHHHHH--HhCCCE---EEEehhh--------------hhhcc---cchHHHHHHHHHHHHHhcCCeEEee
Confidence 589999999999998 443332 2333222 11000 1111122222222 22345799999
Q ss_pred eCCCCC-----C-c--------cChhHHHHhhcCC--CCCcEEEEEeCchHHHH-Hh---CC-cceEeCCCCChhhHHHH
Q 046115 80 DDVWNE-----D-Y--------YKWEPFYKCLKNS--LHESKILITTRKETVAR-IM---GS-THVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~-----~-~--------~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~~---~~-~~~~~l~~l~~~ea~~L 138 (505)
|+++.. . . ..+..++..+... ..+..||.||..++... .+ +. ...+.++..+.++-.++
T Consensus 281 DEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~I 360 (434)
T 4b4t_M 281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360 (434)
T ss_dssp ECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHH
T ss_pred cchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHH
Confidence 998320 0 0 0122344444433 23455666887654322 21 12 34778888888888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
|+.+...-.. ....+ ...+++.+.|+-
T Consensus 361 l~~~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 361 LQIHSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp HHHHHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred HHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 8766532221 22223 356777887754
No 224
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.45 E-value=0.26 Score=45.01 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=63.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Llvl 79 (505)
++|+||||||+.++. .... ..+.++...-.+ .........+..+.+.. ...+.++++
T Consensus 52 p~GtGKTtLakala~--~~~~---~~i~i~g~~l~~-----------------~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 52 PPGCGKTLLAKAVAN--ESGL---NFISVKGPELLN-----------------MYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp STTSCHHHHHHHHHH--HTTC---EEEEEETTTTCS-----------------STTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCcHHHHHHHHHH--HcCC---CEEEEEcHHHHh-----------------hhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 479999999999998 3322 234454332110 00111112222222222 345789999
Q ss_pred eCCCCCCc-----------cChhHHHHhhcCC--CCCcEEEEEeCchHHHHH-h---CC-cceEeCCCCChhhHHHHHHH
Q 046115 80 DDVWNEDY-----------YKWEPFYKCLKNS--LHESKILITTRKETVARI-M---GS-THVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 80 Ddv~~~~~-----------~~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~-~---~~-~~~~~l~~l~~~ea~~Lf~~ 141 (505)
|++..... .....+...+... ....-++.+|..+.+... . +. ...+.++..+.++-.+++..
T Consensus 110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 99854210 0112233333221 234456667776654221 1 12 45678888899888888877
Q ss_pred hh
Q 046115 142 LA 143 (505)
Q Consensus 142 ~~ 143 (505)
..
T Consensus 190 ~~ 191 (274)
T 2x8a_A 190 IT 191 (274)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.43 E-value=0.036 Score=58.89 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=64.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+|||++|+.+++ ...+.-...+.++++...+. .... .......++. ....+|+||
T Consensus 529 p~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~--------------~~~~---~~~l~~~~~~---~~~~vl~lD 586 (758)
T 3pxi_A 529 PTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEK--------------HSTS---GGQLTEKVRR---KPYSVVLLD 586 (758)
T ss_dssp CTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSS--------------CCCC------CHHHHHH---CSSSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhcCCCcceEEEechhcccc--------------cccc---cchhhHHHHh---CCCeEEEEe
Confidence 479999999999998 44333334556665542211 0000 1111111211 233489999
Q ss_pred CCCCCCccChhHHHHhhcCC-----------CCCcEEEEEeCc-----hHH----HHH-----hCC-cceEeCCCCChhh
Q 046115 81 DVWNEDYYKWEPFYKCLKNS-----------LHESKILITTRK-----ETV----ARI-----MGS-THVISVNVLSEME 134 (505)
Q Consensus 81 dv~~~~~~~~~~~~~~~~~~-----------~~~~~iLiTtr~-----~~~----~~~-----~~~-~~~~~l~~l~~~e 134 (505)
++..........+...+... ...+.||.||.. ..+ ... ... ...+.+.+++.++
T Consensus 587 Ei~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 587 AIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp CGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred CccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 99776655556666655542 135678888873 111 111 122 2478888898888
Q ss_pred HHHHHHHh
Q 046115 135 CWSVFQSL 142 (505)
Q Consensus 135 a~~Lf~~~ 142 (505)
..+++...
T Consensus 667 ~~~i~~~~ 674 (758)
T 3pxi_A 667 LTEIVSLM 674 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.36 E-value=0.0063 Score=56.99 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~wv~~ 31 (505)
.+|+|||+||..+++ ... ..-..++++++
T Consensus 160 ~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp STTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 479999999999998 444 33334556654
No 227
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.23 E-value=0.019 Score=57.25 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHH-------HhCCcceEeCCCCChhhHHHHHHHhh
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR-------IMGSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-------~~~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
..++.+|++|. .. .....+......+ ..++|.+|....... .......+.++..+.++..+++....
T Consensus 265 ~~~~~iLfiD~--~~---~a~~~L~~~L~~g-~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFIDA--AI---DASNILKPSLARG-ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEECC-------------CCCTTSS-SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEeC--ch---hHHHHHHHhhcCC-CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 35678899992 11 1111222222222 345555554433111 11234578999999999999998654
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.13 E-value=0.012 Score=48.14 Aligned_cols=38 Identities=5% Similarity=-0.040 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcCC-CCCcEEEEEeCc
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKNS-LHESKILITTRK 112 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~~-~~~~~iLiTtr~ 112 (505)
-.|++|++..........+...+... ..+.++|.||..
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 47889999776544445555555443 345678877763
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.11 E-value=0.038 Score=49.41 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=46.0
Q ss_pred CCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-----------CCChhcHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVER----NFEKRTWVCVSEPFDEFRIARAIIESLTPGS-----------AKDLVEFQSLMQH 65 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~~~~~~~~ 65 (505)
.+|+||||||+.++....... .-..++|++....+....+ ..++..++... .....+..+....
T Consensus 32 ~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQ 110 (243)
T ss_dssp CTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHH
Confidence 479999999999987211111 2357889987775554433 33444443221 1111222222333
Q ss_pred HHHHcC-CceEEEEEeCCCC
Q 046115 66 IEECVA-GKKFLLVLDDVWN 84 (505)
Q Consensus 66 l~~~l~-~~r~LlvlDdv~~ 84 (505)
+...+. .+.-++|+|.+..
T Consensus 111 ~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHhcCCceEEEEeCchH
Confidence 444443 4677999999854
No 230
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.04 E-value=0.0077 Score=55.91 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe--CCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV--SEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
++|+|||+||.+++. . .-..++|++. .+..+. . ..+.++..+.+.+.+.+.+ ++|
T Consensus 131 pPGsGKTtLAlqlA~--~---~G~~VlyIs~~~eE~v~~---------------~--~~~le~~l~~i~~~l~~~~-LLV 187 (331)
T 2vhj_A 131 KGNSGKTPLVHALGE--A---LGGKDKYATVRFGEPLSG---------------Y--NTDFNVFVDDIARAMLQHR-VIV 187 (331)
T ss_dssp SCSSSHHHHHHHHHH--H---HHTTSCCEEEEBSCSSTT---------------C--BCCHHHHHHHHHHHHHHCS-EEE
T ss_pred CCCCCHHHHHHHHHH--h---CCCCEEEEEecchhhhhh---------------h--hcCHHHHHHHHHHHHhhCC-EEE
Confidence 589999999999987 3 1123557777 332110 0 0344555555566665555 999
Q ss_pred EeCCCC
Q 046115 79 LDDVWN 84 (505)
Q Consensus 79 lDdv~~ 84 (505)
+|++..
T Consensus 188 IDsI~a 193 (331)
T 2vhj_A 188 IDSLKN 193 (331)
T ss_dssp EECCTT
T ss_pred Eecccc
Confidence 999954
No 231
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.82 E-value=0.064 Score=49.62 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHH-HHHHHHH--c-
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSL-MQHIEEC--V- 70 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~-~~~l~~~--l- 70 (505)
.+|+||||||.+++. ...+.+ ..++||+....++.. .+++++..... ...+.++. ...+... +
T Consensus 36 ~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 36 PSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp SSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 479999999998887 444443 357799988888764 25666643221 12344444 3333332 3
Q ss_pred CCceEEEEEeCCCC
Q 046115 71 AGKKFLLVLDDVWN 84 (505)
Q Consensus 71 ~~~r~LlvlDdv~~ 84 (505)
..+.-++|+|.+..
T Consensus 109 ~~~~~lvVIDSI~a 122 (333)
T 3io5_A 109 RGEKVVVFIDSLGN 122 (333)
T ss_dssp TTCCEEEEEECSTT
T ss_pred ccCceEEEEecccc
Confidence 44678999999955
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.76 E-value=0.0096 Score=54.46 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=39.7
Q ss_pred CceEEEEEeCCCCCCc---------------cChhHHHHhhcCC---CCCcEEEEEeCchHHHH-H-hC--C-cceEeCC
Q 046115 72 GKKFLLVLDDVWNEDY---------------YKWEPFYKCLKNS---LHESKILITTRKETVAR-I-MG--S-THVISVN 128 (505)
Q Consensus 72 ~~r~LlvlDdv~~~~~---------------~~~~~~~~~~~~~---~~~~~iLiTtr~~~~~~-~-~~--~-~~~~~l~ 128 (505)
..+.+|++|+++.... ..+..+...+... .....|+.||....... . .. . ...+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 3567999999954211 1123333333322 12355677776553211 1 11 1 2467788
Q ss_pred CCChhhHHHHHHHhh
Q 046115 129 VLSEMECWSVFQSLA 143 (505)
Q Consensus 129 ~l~~~ea~~Lf~~~~ 143 (505)
..+.++-.+++....
T Consensus 182 ~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 182 KPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCTTTHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 888888888887654
No 233
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.66 E-value=0.05 Score=43.42 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=33.6
Q ss_pred ccccc--ccCccccCCCCcceeeccCCccccccchh-hhcCCCCcEEecCCCc
Q 046115 399 NNLIK--EIPTNIEKLLHLKYLNLKGQKKIEKLPET-LCELYNLERLNVDDCQ 448 (505)
Q Consensus 399 ~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 448 (505)
++.+. .+|..+ ..+|++|+|++|. ++.+|.. +..+++|+.|+|++|+
T Consensus 17 ~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 17 RRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555 666543 4468888888888 7777664 4678888888888876
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.58 E-value=0.071 Score=50.91 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=48.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcCC-ceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVAG-KKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~-~r~ 75 (505)
.+|+|||+||.+++. .....-..++|++....++.. .+..++.... ....+.++..+.+....+. ..-
T Consensus 82 ~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 82 PESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred CCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 379999999999987 443333468899988877654 2344442211 1123455555555555443 456
Q ss_pred EEEEeCCCC
Q 046115 76 LLVLDDVWN 84 (505)
Q Consensus 76 LlvlDdv~~ 84 (505)
+||+|.+..
T Consensus 155 lVVIDsl~~ 163 (366)
T 1xp8_A 155 VVVVDSVAA 163 (366)
T ss_dssp EEEEECTTT
T ss_pred EEEEeChHH
Confidence 899999854
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.53 E-value=0.13 Score=54.36 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=76.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||+||+++++ +....| +.++.. ++.... ...................+++|++|
T Consensus 246 PPGTGKT~LAraiA~--elg~~~---~~v~~~----------~l~sk~------~gese~~lr~lF~~A~~~~PsIIfID 304 (806)
T 3cf2_A 246 PPGTGKTLIARAVAN--ETGAFF---FLINGP----------EIMSKL------AGESESNLRKAFEEAEKNAPAIIFID 304 (806)
T ss_dssp CTTSCHHHHHHHHHT--TTTCEE---EEEEHH----------HHHSSC------TTHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhCCeE---EEEEhH----------Hhhccc------chHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 589999999999998 443332 344422 111111 11122223333344445678999999
Q ss_pred CCCCCCc------cC-----hhHHHHhhcCC--CCCcEEEEEeCchHHH-HHhC---C-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNEDY------YK-----WEPFYKCLKNS--LHESKILITTRKETVA-RIMG---S-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~~------~~-----~~~~~~~~~~~--~~~~~iLiTtr~~~~~-~~~~---~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
+++.-.. .. ..++...+... ..+..||.||..++.. ..+. . ...+.++..+.++-.++|+.+
T Consensus 305 EiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~ 384 (806)
T 3cf2_A 305 ELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp SGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT
T ss_pred hhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHH
Confidence 9854210 01 12233323222 2345567777765432 2211 2 347888888888888888766
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 143 AISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
...... ....+ ...+++.+.|+.
T Consensus 385 l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 385 TKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred hcCCCC-CcccC----HHHHHHhcCCCC
Confidence 422111 22223 456777887764
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.38 E-value=0.069 Score=54.17 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=24.6
Q ss_pred CcEEEEEeCchHH-H-HHhCCcceEeCCCCChhhHHHHHHHhh
Q 046115 103 ESKILITTRKETV-A-RIMGSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 103 ~~~iLiTtr~~~~-~-~~~~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
...+|.||..... . .......++.+..++.++-.+++..+.
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 3456666665321 1 111123478899999999888887654
No 237
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.32 E-value=0.13 Score=49.75 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=82.1
Q ss_pred cCCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccc
Q 046115 350 GNVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEK 428 (505)
Q Consensus 350 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~ 428 (505)
..|.++..|+.+.+..+... .-...|..+..|+.+.+. .. +..++ ..|..+.+|+.+.|..+ ++.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~----I~~~aF~~c~~L~~i~l~-------~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~ 324 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS----IGTGAFMNCPALQDIEFS-------SR-ITELPESVFAGCISLKSIDIPEG--ITQ 324 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE----ECTTTTTTCTTCCEEECC-------TT-CCEECTTTTTTCTTCCEEECCTT--CCE
T ss_pred ceeeecccccEEecccccce----ecCcccccccccccccCC-------Cc-ccccCceeecCCCCcCEEEeCCc--ccE
Confidence 34667888888887655432 123346778889988885 33 34443 34678899999999753 555
Q ss_pred cch-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccccccccCCccCCccce
Q 046115 429 LPE-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 492 (505)
Q Consensus 429 lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 492 (505)
++. .+..+.+|+.+.|.. . +..++. .+.++++|+.+.+.++.. .. ..+..+.+|+.+.+
T Consensus 325 I~~~aF~~C~~L~~i~ip~-s-v~~I~~~aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS-S-VTKIPESAFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPV 385 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT-T-CCBCCGGGGTTCTTCCEEEESSCHH--HH-HTCBCCCCC-----
T ss_pred ehHhHhhCCCCCCEEEECc-c-cCEEhHhHhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEe
Confidence 644 577889999999965 2 667765 488899999999988752 22 34666677776654
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.30 E-value=0.21 Score=47.97 Aligned_cols=119 Identities=13% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCCccccccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
+.++..|+.+.+..+- ... -...+..+.+|+.+.+. .+ +..++ ..+..+.+|+.+.+.++. +..++
T Consensus 236 f~~~~~L~~i~lp~~v-~~I---~~~aF~~~~~l~~i~l~-------~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~ 302 (379)
T 4h09_A 236 FYGMKALDEIAIPKNV-TSI---GSFLLQNCTALKTLNFY-------AK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLE 302 (379)
T ss_dssp TTTCSSCCEEEECTTC-CEE---CTTTTTTCTTCCEEEEC-------CC-CSEECTTTTTTCTTCCEEEECCTT-CCEEC
T ss_pred ccCCccceEEEcCCCc-cEe---Cccccceeehhcccccc-------cc-ceeccccccccccccccccccccc-cceeh
Confidence 3355566665554431 111 12234555566666664 22 22332 235566777777776665 55554
Q ss_pred h-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCcccccc-cccccCCccC
Q 046115 431 E-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYL-PAGIGELIRL 487 (505)
Q Consensus 431 ~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L 487 (505)
. .+..+.+|+.+.|.. .++.++. .+.++++|+.+.+..+ +..+ ...|.++..+
T Consensus 303 ~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSSCC
T ss_pred hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCCCC
Confidence 3 456677777777754 2555554 3666677777776543 2233 2345555433
No 239
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.28 E-value=0.2 Score=49.60 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEE---------eC----chHH-HHHhCCcceEeCCCCChhhHHHHHH
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILIT---------TR----KETV-ARIMGSTHVISVNVLSEMECWSVFQ 140 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiT---------tr----~~~~-~~~~~~~~~~~l~~l~~~ea~~Lf~ 140 (505)
-++++|++..........+...+.......-|+.| |. ...+ .........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 48999999777666677777777766555434455 33 1111 1122334467999999999999997
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHHc-CCChHH
Q 046115 141 SLAISGKTIGKRENLEKIGREIVKKC-KGLPLA 172 (505)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Pla 172 (505)
..+...+. .-.++++..|++.+ +|.|..
T Consensus 377 ~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~ 405 (456)
T 2c9o_A 377 IRAQTEGI----NISEEALNHLGEIGTKTTLRY 405 (456)
T ss_dssp HHHHHHTC----CBCHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHhCC----CCCHHHHHHHHHHccCCCHHH
Confidence 76521111 11245567777777 777753
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.27 E-value=0.14 Score=48.20 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN----FEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||.+++........ -..++|++....++...+. .++..++
T Consensus 115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 3799999999998863211111 2467899988877665544 3455554
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.26 E-value=0.98 Score=42.57 Aligned_cols=102 Identities=10% Similarity=-0.058 Sum_probs=69.4
Q ss_pred CCceEEEEEeCCCC-CCccChhHHHHhhcCCCCCcEEEEEeCc-------hHHHHHhC-CcceEeCCCCChhhHHHHHHH
Q 046115 71 AGKKFLLVLDDVWN-EDYYKWEPFYKCLKNSLHESKILITTRK-------ETVARIMG-STHVISVNVLSEMECWSVFQS 141 (505)
Q Consensus 71 ~~~r~LlvlDdv~~-~~~~~~~~~~~~~~~~~~~~~iLiTtr~-------~~~~~~~~-~~~~~~l~~l~~~ea~~Lf~~ 141 (505)
-+++-++|+|++.. ........+...+....+++.+|+++.+ ..+.+.+. ....++..+++..+....+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35567888999866 4444567788877766667777776643 23444433 346889999999999888877
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 046115 142 LAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTI 176 (505)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 176 (505)
.+...+. .-.++++..+++.++|....+...
T Consensus 154 ~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 6533221 123567888999999988766553
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.15 E-value=0.22 Score=47.83 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCcccccccc-CccccCCCCcceeeccCCccccccc
Q 046115 352 VTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEI-PTNIEKLLHLKYLNLKGQKKIEKLP 430 (505)
Q Consensus 352 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp 430 (505)
+..+.+|..+.+..+-. ......+..+..|+.+.+. .+ +..+ ...+..+.+|+.+.+..+ +..++
T Consensus 213 f~~~~~l~~i~~~~~~~----~i~~~~f~~~~~L~~i~lp-------~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~ 278 (379)
T 4h09_A 213 FSYGKNLKKITITSGVT----TLGDGAFYGMKALDEIAIP-------KN-VTSIGSFLLQNCTALKTLNFYAK--VKTVP 278 (379)
T ss_dssp TTTCSSCSEEECCTTCC----EECTTTTTTCSSCCEEEEC-------TT-CCEECTTTTTTCTTCCEEEECCC--CSEEC
T ss_pred cccccccceeeecccee----EEccccccCCccceEEEcC-------CC-ccEeCccccceeehhcccccccc--ceecc
Confidence 44667788877755422 1123346678889999886 33 3333 344667888999888643 55555
Q ss_pred h-hhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCccccccc-ccccCCccCCccce
Q 046115 431 E-TLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVRE 492 (505)
Q Consensus 431 ~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~ 492 (505)
. .+..+.+|+.+.+.++. +..++. .+.++.+|+.+.+..+ +..++ ..|.+|++|+.+.+
T Consensus 279 ~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 4 46788999999998866 777765 4788899999999755 34444 45889999988865
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.13 E-value=0.11 Score=49.29 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER----NFEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||.+++....... .-..++|++....++...+. .++..++
T Consensus 130 ~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp CTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 379999999999887321211 22467799988877765544 3344444
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.11 E-value=0.2 Score=44.20 Aligned_cols=108 Identities=19% Similarity=0.076 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----------------------Chhc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----------------------DLVE 58 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----------------------~~~~ 58 (505)
.+|+|||||++.++. .....=..++|++... ....+...+ ..++..... ...+
T Consensus 31 ~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLT 105 (235)
T ss_dssp STTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CTTBCSSCC
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCceeeecCCC
Confidence 379999999999986 3332223466776544 233333322 233211100 0113
Q ss_pred HHHHHHHHHHHc---CCceEEEEEeCCCCC---CccChhHHHHhhcCC--CCCcEEEEEeCch
Q 046115 59 FQSLMQHIEECV---AGKKFLLVLDDVWNE---DYYKWEPFYKCLKNS--LHESKILITTRKE 113 (505)
Q Consensus 59 ~~~~~~~l~~~l---~~~r~LlvlDdv~~~---~~~~~~~~~~~~~~~--~~~~~iLiTtr~~ 113 (505)
.++....+...+ .-++.+||+|..... +......+...+... ..++.|+++|...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 106 PEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 444444444433 223359999998532 222334444443321 3467888888765
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.86 E-value=0.086 Score=56.06 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Llvl 79 (505)
.+|+|||++|+.+++ ... ...+.++++...+... ...+. +........++. ..+...+ .....+|+|
T Consensus 496 ~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~-----~~~l~-g~~~g~~g~~~~-~~l~~~~~~~~~~vl~l 563 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT-----VSRLI-GAPPGYVGFDQG-GLLTDAVIKHPHAVLLL 563 (758)
T ss_dssp STTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC-----CSSSC-CCCSCSHHHHHT-THHHHHHHHCSSEEEEE
T ss_pred CCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh-----Hhhhc-CCCCCCcCcccc-chHHHHHHhCCCcEEEE
Confidence 479999999999998 442 2344556554322100 00111 111111111111 1111111 234679999
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|++..........+...+.... ..+.||.||..
T Consensus 564 DEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 564 DEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp ETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred eCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 9997765545555655554321 23557777764
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.79 E-value=0.098 Score=49.62 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++....++.. .+.+++.... ....+.++....+...++ .+.-
T Consensus 69 ppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 69 QESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 479999999999987 443332357799887777654 3444443211 122344555555554442 3455
Q ss_pred EEEEeCCCC
Q 046115 76 LLVLDDVWN 84 (505)
Q Consensus 76 LlvlDdv~~ 84 (505)
++|+|.+..
T Consensus 142 lvVIDSi~~ 150 (356)
T 3hr8_A 142 LIVVDSVAA 150 (356)
T ss_dssp EEEEECTTT
T ss_pred eEEehHhhh
Confidence 888999844
No 247
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.63 E-value=0.11 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=23.2
Q ss_pred ccceEEecccccCCccccccccCcc-ccCCCCcceeeccCCc
Q 046115 384 CLRALELQVRESWPRNNLIKEIPTN-IEKLLHLKYLNLKGQK 424 (505)
Q Consensus 384 ~L~~L~l~~~~~~~~~~~~~~~p~~-~~~l~~L~~L~l~~~~ 424 (505)
+|+.|+|+ +|.+..+|.. +..+++|++|+|++|+
T Consensus 32 ~l~~L~Ls-------~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLT-------GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECT-------TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECC-------CCcCCccChhhhhhccccCEEEecCCC
Confidence 57777776 6666666544 4567777777777776
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.50 E-value=0.21 Score=53.02 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCCCcHHHHHHHHhcCcccccC------CCceEE-EEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN------FEKRTW-VCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AG 72 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~------f~~~~w-v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 72 (505)
.+|+|||++|+.++. .+... ....+| ++.+.- +. +. ......++....+...+ ..
T Consensus 215 ~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~~~~~~~l-------------~~-~~-~~~g~~e~~l~~~~~~~~~~ 277 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSLDIGSL-------------LA-GT-KYRGDFEKRFKALLKQLEQD 277 (758)
T ss_dssp CTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEEECCCC----------------C-CC-CCSSCHHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEEEEcHHHH-------------hc-cc-cccchHHHHHHHHHHHHHhc
Confidence 479999999999987 33221 122222 222110 00 01 11122333333333333 34
Q ss_pred ceEEEEEeCCCCC--------CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH-------hCCcceEeCCCCChhhHHH
Q 046115 73 KKFLLVLDDVWNE--------DYYKWEPFYKCLKNSLHESKILITTRKETVARI-------MGSTHVISVNVLSEMECWS 137 (505)
Q Consensus 73 ~r~LlvlDdv~~~--------~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~-------~~~~~~~~l~~l~~~ea~~ 137 (505)
++.+|++|++... .......++..+... ....+|.+|........ ......+.++..+.++..+
T Consensus 278 ~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~ 356 (758)
T 1r6b_X 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQ 356 (758)
T ss_dssp SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHH
T ss_pred CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHH
Confidence 5789999999653 111122233333333 34566666655432211 1123468899999999888
Q ss_pred HHHHhh
Q 046115 138 VFQSLA 143 (505)
Q Consensus 138 Lf~~~~ 143 (505)
++....
T Consensus 357 il~~l~ 362 (758)
T 1r6b_X 357 IINGLK 362 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 249
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.47 E-value=0.07 Score=56.72 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchHHHH-------HhCCcceEeCCCCChhhHHHHHHHhh
Q 046115 71 AGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR-------IMGSTHVISVNVLSEMECWSVFQSLA 143 (505)
Q Consensus 71 ~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~-------~~~~~~~~~l~~l~~~ea~~Lf~~~~ 143 (505)
..++.+|++|.- . .....+...... ...++|.||....... .......+.++..+.++..+++....
T Consensus 265 ~~~~~iLfiD~~--~---~~~~~L~~~l~~-~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 265 QAGNIILFIDAA--I---DASNILKPSLAR-GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCCCCEEEECC-------------CCCTTS-SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCc--h---hHHHHHHHHHhc-CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 456789999921 1 111222222222 3355666665443111 01134578999999999999998654
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.39 E-value=0.038 Score=48.71 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC-ChhcHHHHHHHHHHHcCCc-eEEEEE
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK-DLVEFQSLMQHIEECVAGK-KFLLVL 79 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~-r~Llvl 79 (505)
.|+||||+|..++. +...+-..++.+...... . ....++.+++..... ......+..+.+.+.+.+. .-+||+
T Consensus 21 mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViI 95 (223)
T 2b8t_A 21 MFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 95 (223)
T ss_dssp TTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred CCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 59999999988887 444433334444333211 1 112334444322111 1223344555555554444 459999
Q ss_pred eCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
|.++.-....++.+ ..+.+ .+..|++|-++.
T Consensus 96 DEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 96 DEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred ecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 99976443333333 33333 267899999843
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.33 E-value=2.5 Score=38.33 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHH-HHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQH-IEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-l~~~l~~~r~Llvl 79 (505)
.+|+||||||+.++. ... .+.+.++.. .+..... ......... .+..-.....++++
T Consensus 81 p~GtGKTtl~~~i~~--~~~---~~~i~~~~~----------~~~~~~~-------~~~~~~i~~~~~~~~~~~~~i~~i 138 (278)
T 1iy2_A 81 PPGVGKTHLARAVAG--EAR---VPFITASGS----------DFVEMFV-------GVGAARVRDLFETAKRHAPCIVFI 138 (278)
T ss_dssp CTTSSHHHHHHHHHH--HTT---CCEEEEEHH----------HHHHSTT-------THHHHHHHHHHHHHHTSCSEEEEE
T ss_pred CCcChHHHHHHHHHH--HcC---CCEEEecHH----------HHHHHHh-------hHHHHHHHHHHHHHHhcCCcEEeh
Confidence 479999999999998 443 233444421 1111110 001111222 22222345689999
Q ss_pred eCCCCC--C--------ccC----hhHHHHhhcCC--CCCcEEEEEeCchHHHH-H-h---CCcceEeCCCCChhhHHHH
Q 046115 80 DDVWNE--D--------YYK----WEPFYKCLKNS--LHESKILITTRKETVAR-I-M---GSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~--~--------~~~----~~~~~~~~~~~--~~~~~iLiTtr~~~~~~-~-~---~~~~~~~l~~l~~~ea~~L 138 (505)
|++... . ... ...+...+... .....++.||..+.... . . .-...+.++..+.++-.++
T Consensus 139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 218 (278)
T 1iy2_A 139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218 (278)
T ss_dssp ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHH
Confidence 998321 0 001 12222222222 12234555666654321 1 1 1245788888888888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+...... ........ ...+++.+.|+.
T Consensus 219 l~~~~~~-~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 219 LRIHARG-KPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp HHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHcc-CCCCcccC----HHHHHHHcCCCC
Confidence 8765521 11111112 345677777755
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.24 E-value=0.16 Score=47.76 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHhcCccccc---------CC-----CceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER---------NF-----EKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||+||.+++....... .. ..++|++....++...+.. ++..++
T Consensus 106 ~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp STTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 379999999999886321211 11 3677999888776665553 345554
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.23 E-value=0.12 Score=55.62 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCC-CCChhcHHHHHHHHHHHcCCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGS-AKDLVEFQSLMQHIEECVAGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~r~Llvl 79 (505)
.+|+|||++|+.+++ ...+.-...+.++++...... ....+ ++.+. .............+.. ....+|+|
T Consensus 596 p~GtGKT~lA~~la~--~~~~~~~~~i~i~~~~~~~~~-~~s~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~l 666 (854)
T 1qvr_A 596 PTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILF 666 (854)
T ss_dssp CSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSG-GGGGC-----------------CHHHHHHH---CSSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhcCCCCcEEEEechhccchh-HHHHH---cCCCCCCcCccccchHHHHHHh---CCCeEEEE
Confidence 479999999999988 442222234456655433211 00111 01000 0000000111222222 23468999
Q ss_pred eCCCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 80 DDVWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 80 Ddv~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
|++..........+...+.... .++.||.||..
T Consensus 667 DEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 667 DEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp SSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred ecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 9997766555566666655431 24447777764
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.89 E-value=2.5 Score=37.63 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=70.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHc-CCceEEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECV-AGKKFLLVL 79 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~Llvl 79 (505)
.+|+||||||+.++. ... .+.+.++.. .+..... .........+.+.. .....++++
T Consensus 57 ~~G~GKTtl~~~i~~--~~~---~~~i~~~~~----------~~~~~~~-------~~~~~~i~~~~~~~~~~~~~i~~~ 114 (254)
T 1ixz_A 57 PPGVGKTHLARAVAG--EAR---VPFITASGS----------DFVEMFV-------GVGAARVRDLFETAKRHAPCIVFI 114 (254)
T ss_dssp CTTSSHHHHHHHHHH--HTT---CCEEEEEHH----------HHHHSCT-------THHHHHHHHHHHHHTTSSSEEEEE
T ss_pred CCCCCHHHHHHHHHH--HhC---CCEEEeeHH----------HHHHHHh-------hHHHHHHHHHHHHHHhcCCeEEEe
Confidence 479999999999998 433 233344321 1111110 01112222223332 345689999
Q ss_pred eCCCCCC----------ccC----hhHHHHhhcCC--CCCcEEEEEeCchHHHHH-h----CCcceEeCCCCChhhHHHH
Q 046115 80 DDVWNED----------YYK----WEPFYKCLKNS--LHESKILITTRKETVARI-M----GSTHVISVNVLSEMECWSV 138 (505)
Q Consensus 80 Ddv~~~~----------~~~----~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea~~L 138 (505)
|+++... ... ...+...+... ....-++.||..+..... . .-...+.++..+.++-.++
T Consensus 115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 194 (254)
T 1ixz_A 115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194 (254)
T ss_dssp ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHH
T ss_pred hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHH
Confidence 9983210 001 12333333322 223345556666544221 1 1134678888888888888
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 139 FQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 139 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
+...... .......+ ...+++.+.|+.
T Consensus 195 l~~~~~~-~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 195 LRIHARG-KPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHcC-CCCCcccC----HHHHHHHcCCCC
Confidence 8765421 11111112 345677777654
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.64 E-value=0.23 Score=47.06 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=46.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++.....+.. ....++.... ....+.++....+..... .+.-
T Consensus 69 ~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 69 PESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 379999999999987 343333467899988776653 2344442211 112234555554444443 3456
Q ss_pred EEEEeCCCC
Q 046115 76 LLVLDDVWN 84 (505)
Q Consensus 76 LlvlDdv~~ 84 (505)
+||+|.+..
T Consensus 142 lIVIDsl~~ 150 (349)
T 2zr9_A 142 IIVIDSVAA 150 (349)
T ss_dssp EEEEECGGG
T ss_pred EEEEcChHh
Confidence 899999844
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.42 E-value=0.2 Score=47.63 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHHHHHHHHHc-CCceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSLMQHIEECV-AGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l-~~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++....++... +..++..... ...+.++..+.+.... ..+.-
T Consensus 71 ~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 71 PESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 379999999999987 4433334688999888776542 3444422110 1123344444433332 23445
Q ss_pred EEEEeCCCC
Q 046115 76 LLVLDDVWN 84 (505)
Q Consensus 76 LlvlDdv~~ 84 (505)
+||+|.+..
T Consensus 144 lVVIDsl~~ 152 (356)
T 1u94_A 144 VIVVDSVAA 152 (356)
T ss_dssp EEEEECGGG
T ss_pred EEEEcCHHH
Confidence 899999843
No 257
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.25 E-value=1.2 Score=44.40 Aligned_cols=140 Identities=10% Similarity=0.072 Sum_probs=71.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcC----CceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVA----GKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~----~~r~L 76 (505)
.+|+|||+||+.++. ... ...+.++...-.+ .. . ......+...+. ..+.+
T Consensus 72 ppGtGKTtLaraIa~--~~~---~~~i~i~g~~~~~---------------~~--~---g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 72 PPGVGKTHLARAVAG--EAR---VPFITASGSDFVE---------------MF--V---GVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp SSSSSHHHHHHHHHH--HTT---CCEEEEEGGGGTS---------------SC--T---THHHHHHHHHTTTSSSSSSCE
T ss_pred CCCCCHHHHHHHHHH--HhC---CCEEEEehhHHHH---------------hh--h---hhHHHHHHHHHHHHHhcCCCE
Confidence 479999999999998 433 2334444332100 00 0 011112222222 23579
Q ss_pred EEEeCCCCCCc----------c----ChhHHHHhhcCC--CCCcEEEEEeCchHHHHH-h----CCcceEeCCCCChhhH
Q 046115 77 LVLDDVWNEDY----------Y----KWEPFYKCLKNS--LHESKILITTRKETVARI-M----GSTHVISVNVLSEMEC 135 (505)
Q Consensus 77 lvlDdv~~~~~----------~----~~~~~~~~~~~~--~~~~~iLiTtr~~~~~~~-~----~~~~~~~l~~l~~~ea 135 (505)
+++|+++.... . .+..+...+... .....++.||..+..... . .-...+.++..+.++-
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 99999943210 0 112333333322 234456667766654221 1 1134778888888888
Q ss_pred HHHHHHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 136 WSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 136 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
.+++..+.-. ........ ...++..+.|+.
T Consensus 207 ~~IL~~~~~~-~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 207 EQILRIHARG-KPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHTTSS-SCCCCSST----THHHHTTSCSCC
T ss_pred HHHHHHHHhc-CCCChHHH----HHHHHHhcCCCC
Confidence 8888765421 11111212 345777787766
No 258
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.11 E-value=0.27 Score=46.28 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcC-----------CCCCcEEEEEeCchH------H-HHHhCCcc-eEeCCCCChhhH
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKN-----------SLHESKILITTRKET------V-ARIMGSTH-VISVNVLSEMEC 135 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~-----------~~~~~~iLiTtr~~~------~-~~~~~~~~-~~~l~~l~~~ea 135 (505)
.++++|++..........+...+.. ......|+.|+.... + ........ .+.++..+.++-
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~ 190 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESE 190 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHH
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHH
Confidence 5899999976554444444444332 123445555665221 1 11123333 488999999998
Q ss_pred HHHHHHhh
Q 046115 136 WSVFQSLA 143 (505)
Q Consensus 136 ~~Lf~~~~ 143 (505)
.+++....
T Consensus 191 ~~il~~~~ 198 (331)
T 2r44_A 191 LEVMRRVS 198 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 88887765
No 259
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.89 E-value=0.29 Score=47.02 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||++|+.+++
T Consensus 80 p~GtGKT~la~~la~ 94 (376)
T 1um8_A 80 PTGSGKTLMAQTLAK 94 (376)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 260
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.80 E-value=0.25 Score=46.92 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=43.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCC---Cc-eEEEEeCCCCCHHHHHHHHHHHcCCCC-----------CCChhcHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF---EK-RTWVCVSEPFDEFRIARAIIESLTPGS-----------AKDLVEFQSLMQH 65 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f---~~-~~wv~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~~~~~~~~ 65 (505)
.+|+|||||+..++......... .+ ++|++....+... .+..+........ ........+....
T Consensus 139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~-~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~ 217 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 217 (349)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH-HHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH-HHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHH
Confidence 37999999999998731111111 23 4799876654332 2333444433210 0111122233334
Q ss_pred HHHHcC------CceEEEEEeCCCC
Q 046115 66 IEECVA------GKKFLLVLDDVWN 84 (505)
Q Consensus 66 l~~~l~------~~r~LlvlDdv~~ 84 (505)
+...+. .+.-+||+|.+..
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHhccccCCCCEEEEeCchH
Confidence 444443 4677999999854
No 261
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.09 E-value=0.67 Score=43.18 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIES 47 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 47 (505)
.+|+||||||..++.. ...+-..++|++... +...+...++..
T Consensus 76 ~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp CTTSSHHHHHHHHHHH--HHTTTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--HHHcCCeEEEEECCC--CHHHHHHHHHHH
Confidence 3799999999998863 322225677888763 455555555543
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.43 E-value=0.44 Score=46.69 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCC-HHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFD-EFRIARAII 45 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~l~ 45 (505)
+|+||||||..++. ....++ +..+++-+++..+ ..++..++.
T Consensus 160 sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 160 AGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp SSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 79999999999987 444444 3445666666543 334444443
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.00 E-value=0.76 Score=40.25 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHhcCccc---cc-CCCceEEEEeCCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDV---ER-NFEKRTWVCVSEPFD 36 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~---~~-~f~~~~wv~~~~~~~ 36 (505)
.+|+|||||++.++..... .. .-..++|++......
T Consensus 33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4799999999999762111 11 124577887655443
No 264
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.95 E-value=0.94 Score=43.63 Aligned_cols=102 Identities=11% Similarity=0.265 Sum_probs=73.4
Q ss_pred HhhcCcccceEEecccccCCccccccccCccccCCCCcceeeccCCccccccch-hhhcCCCCcEEecCCCcCccccch-
Q 046115 378 LFEKLTCLRALELQVRESWPRNNLIKEIPTNIEKLLHLKYLNLKGQKKIEKLPE-TLCELYNLERLNVDDCQNLRELPR- 455 (505)
Q Consensus 378 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~- 455 (505)
.|..+.+|+.+.+. ++....-...+..+..|+.+.+.. . +..++. .+..+.+|+.+.|..+ +..+..
T Consensus 260 aF~~c~~L~~i~lp-------~~~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMP-------DSVVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG--ITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECC-------TTCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred eeeecccccEEecc-------cccceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence 46677888888886 333332334567888999999863 3 566665 5678999999999763 666765
Q ss_pred hccccccCceeecCCCccccccc-ccccCCccCCccce
Q 046115 456 GIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVRE 492 (505)
Q Consensus 456 ~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~ 492 (505)
.+.++.+|+.+.+..+ +..+. ..|.+|++|+.+.+
T Consensus 329 aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 4888999999999755 34444 46899999988764
No 265
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.89 E-value=1.1 Score=43.13 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCCCCCCceEEEecCCCccccccchhHHhhcCcccceEEecccccCCccccccccC-ccccCCCCcceeeccCC------
Q 046115 351 NVTGLRGLRSLLVKSDEYSWSSEVLPQLFEKLTCLRALELQVRESWPRNNLIKEIP-TNIEKLLHLKYLNLKGQ------ 423 (505)
Q Consensus 351 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~p-~~~~~l~~L~~L~l~~~------ 423 (505)
.|.++.+|+.+.+..+ +... -...|..+.+|+.+++. ++ +..++ ..+..+..|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I---~~~aF~~c~~L~~i~lp-------~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~ 133 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI---GEFAFENCSKLEIINIP-------DS-VKMIGRCTFSGCYALKSILLPLMLKSIGV 133 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE---CTTTTTTCTTCCEECCC-------TT-CCEECTTTTTTCTTCCCCCCCTTCCEECT
T ss_pred HhhCCCCceEEEeCCC-ccCc---chhHhhCCCCCcEEEeC-------CC-ceEccchhhcccccchhhcccCceeeecc
Confidence 4557778888777533 2221 23346677778887775 22 22222 22344444444443321
Q ss_pred ------c--------ccccc-chhhhcCCCCcEEecCCCcCccccch-hccccccCceeecCCCccccccc-ccccCCcc
Q 046115 424 ------K--------KIEKL-PETLCELYNLERLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLP-AGIGELIR 486 (505)
Q Consensus 424 ------~--------~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~ 486 (505)
. ....+ ...+..+.+|+.+.+.++ +..++. .+..+++|+.+.+..+ +..++ ..|.++..
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 1 01111 124667788888888763 445554 4677888888888766 23333 34677777
Q ss_pred CCccce
Q 046115 487 LRRVRE 492 (505)
Q Consensus 487 L~~L~~ 492 (505)
|+.+.+
T Consensus 210 L~~i~~ 215 (394)
T 4fs7_A 210 LENMEF 215 (394)
T ss_dssp CCBCCC
T ss_pred cceeec
Confidence 776653
No 266
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.70 E-value=0.34 Score=41.50 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCceEEEecCC-Ccccc-ccchhHHhhcCcccceEEecccccCCccccccc-----cCccccCCCCcceeeccCCccc
Q 046115 354 GLRGLRSLLVKSD-EYSWS-SEVLPQLFEKLTCLRALELQVRESWPRNNLIKE-----IPTNIEKLLHLKYLNLKGQKKI 426 (505)
Q Consensus 354 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~ 426 (505)
.-+.|+.|+|.++ .+... ...+-..+..-++|+.|+|+ ++.++. +...+..-+.|++|+|++|. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 4567888888875 54321 01244445666778888887 444432 22334455678888888888 4
Q ss_pred c-----ccchhhhcCCCCcEEecCCCcC--cc-----ccchhccccccCceeecCCCc
Q 046115 427 E-----KLPETLCELYNLERLNVDDCQN--LR-----ELPRGIGKLRKLMYLHNEDTG 472 (505)
Q Consensus 427 ~-----~lp~~~~~l~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~~ 472 (505)
+ .+-..+..-..|+.|+|++|.. +. .+-..+..-++|+.|+++.|.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4 2223344456688888886542 22 122334555678888887664
No 267
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.47 E-value=0.92 Score=47.86 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|.|||.+|+++++ +.... ++.+.. .+++.... ..............-+..+++|+||
T Consensus 519 PPGtGKT~lAkaiA~--e~~~~-----f~~v~~--------~~l~s~~v------Gese~~vr~lF~~Ar~~~P~IifiD 577 (806)
T 3cf2_A 519 PPGCGKTLLAKAIAN--ECQAN-----FISIKG--------PELLTMWF------GESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp STTSSHHHHHHHHHH--TTTCE-----EEECCH--------HHHHTTTC------SSCHHHHHHHHHHHHTTCSEEEECS
T ss_pred CCCCCchHHHHHHHH--HhCCc-----eEEecc--------chhhcccc------chHHHHHHHHHHHHHHcCCceeech
Confidence 589999999999998 44322 344331 22333222 1111222233333335578999999
Q ss_pred CCCCCC--------------ccChhHHHHhhcCCC--CCcEEEEEeCchHH-HHHh---CC-cceEeCCCCChhhHHHHH
Q 046115 81 DVWNED--------------YYKWEPFYKCLKNSL--HESKILITTRKETV-ARIM---GS-THVISVNVLSEMECWSVF 139 (505)
Q Consensus 81 dv~~~~--------------~~~~~~~~~~~~~~~--~~~~iLiTtr~~~~-~~~~---~~-~~~~~l~~l~~~ea~~Lf 139 (505)
+++.-. .....+++..+.... .+.-||-||..++. ...+ +. ...+.++..+.++-.++|
T Consensus 578 EiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il 657 (806)
T 3cf2_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp CGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTT
T ss_pred hhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHH
Confidence 985411 001234444444332 23334446654332 1111 12 456777776776666777
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHcCCCh
Q 046115 140 QSLAISGKTIGKRENLEKIGREIVKKCKGLP 170 (505)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 170 (505)
..+... .......+ ...+++.+.|+.
T Consensus 658 ~~~l~~-~~~~~~~d----l~~la~~t~g~S 683 (806)
T 3cf2_A 658 KANLRK-SPVAKDVD----LEFLAKMTNGFS 683 (806)
T ss_dssp TTTSSC-C--CCC------------------
T ss_pred HHHhcC-CCCCCCCC----HHHHHHhCCCCC
Confidence 655422 11122222 345666666543
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.34 E-value=0.12 Score=43.45 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 11 ~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQS 25 (178)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999997
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.07 E-value=0.8 Score=44.16 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVER----NFEKRTWVCVSEPFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 49 (505)
.+|+|||||+..++-...... .-..++|++....+....+ ..+...++
T Consensus 186 ~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 379999999997753111111 2345789987776655433 33555554
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.52 E-value=0.59 Score=49.76 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=60.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
.+|+||||||+.++. .....| +.++... +..... ..........+.........++++|
T Consensus 246 p~GtGKTtLarala~--~l~~~~---i~v~~~~--------------l~~~~~--g~~~~~l~~vf~~a~~~~p~il~iD 304 (806)
T 1ypw_A 246 PPGTGKTLIARAVAN--ETGAFF---FLINGPE--------------IMSKLA--GESESNLRKAFEEAEKNAPAIIFID 304 (806)
T ss_dssp CTTSSHHHHHHHHHH--TTTCEE---EEEEHHH--------------HSSSST--THHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCCCHHHHHHHHHH--HcCCcE---EEEEchH--------------hhhhhh--hhHHHHHHHHHHHHHhcCCcEEEec
Confidence 479999999999998 443322 3444211 110000 1111112222233333457899999
Q ss_pred CCCCCCc------c-----ChhHHHHhhcCC--CCCcEEEEEeCchHHH-HHhC---C-cceEeCCCCChhhHHHHHHHh
Q 046115 81 DVWNEDY------Y-----KWEPFYKCLKNS--LHESKILITTRKETVA-RIMG---S-THVISVNVLSEMECWSVFQSL 142 (505)
Q Consensus 81 dv~~~~~------~-----~~~~~~~~~~~~--~~~~~iLiTtr~~~~~-~~~~---~-~~~~~l~~l~~~ea~~Lf~~~ 142 (505)
++..... . ....+...+... ..+..++.||..+... .... . ...+.+...+.++-.+++...
T Consensus 305 Eid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 305 ELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp SGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT
T ss_pred cHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence 9843110 0 112233333222 2345566666654321 1111 1 235678888888888888766
Q ss_pred h
Q 046115 143 A 143 (505)
Q Consensus 143 ~ 143 (505)
.
T Consensus 385 ~ 385 (806)
T 1ypw_A 385 T 385 (806)
T ss_dssp T
T ss_pred H
Confidence 4
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.00 E-value=0.099 Score=44.57 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=25.2
Q ss_pred cCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCc
Q 046115 70 VAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRK 112 (505)
Q Consensus 70 l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~ 112 (505)
+.++.-+|++|.++.-+. .|...+..+.+. +..|++|.++
T Consensus 73 ~~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 73 IEEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp CCTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred hcCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 334567999999977543 344444433333 6789998874
No 272
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=86.73 E-value=2.2 Score=41.79 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceEEEEeCCCC-CHHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEPF-DEFRIARAIIES 47 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~l~~~ 47 (505)
+|+|||+|+.++++ .+.+ +-+.++++-+++.. +..++..++...
T Consensus 162 ~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 162 AGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 69999999999987 4433 23556677777654 445566666553
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.54 E-value=0.25 Score=41.14 Aligned_cols=15 Identities=20% Similarity=-0.108 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 9 ~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSK 23 (173)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.45 E-value=0.26 Score=41.41 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999987
No 275
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.36 E-value=0.56 Score=40.72 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. .....- .++-++.....+.
T Consensus 10 GGvGKTT~a~~LA~--~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 10 GGVGKTTTAVHLSA--YLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp TTSSHHHHHHHHHH--HHHTTS-CEEEEEECTTCHH
T ss_pred CCCcHHHHHHHHHH--HHHhcC-CEEEEECCCCCCH
Confidence 89999999999987 554443 6667887765443
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.01 E-value=0.24 Score=47.13 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-Cc-eEEEEeCCCCCHHHHHHHHHHHcCC----CCCCChhcHHHH--------HHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EK-RTWVCVSEPFDEFRIARAIIESLTP----GSAKDLVEFQSL--------MQHI 66 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~-~~wv~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~--------~~~l 66 (505)
.+|+|||||++.+++ .+..+. +. ++++-+++.... ..++.+.+.. ....++....-. .+.+
T Consensus 182 ~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyf 256 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERPEE---VTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRL 256 (422)
T ss_dssp CSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 379999999999987 554333 22 335656654322 3333444421 111122111111 1122
Q ss_pred HHHcCCceEEEEEeCC
Q 046115 67 EECVAGKKFLLVLDDV 82 (505)
Q Consensus 67 ~~~l~~~r~LlvlDdv 82 (505)
++ .++.+||++||+
T Consensus 257 rd--~G~dVLil~Dsl 270 (422)
T 3ice_A 257 VE--HKKDVIILLDSI 270 (422)
T ss_dssp HH--TSCEEEEEEECH
T ss_pred Hh--cCCCEEEEEeCc
Confidence 22 578999999998
No 277
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.65 E-value=1.1 Score=38.50 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 46 (505)
-|+||||.++.++. ....+-..+++...-......+..+.++.
T Consensus 9 DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 59999999999987 55444333444432222333444444443
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.45 E-value=0.34 Score=41.23 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 17 ~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 17 HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999998
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.35 E-value=0.33 Score=40.47 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=12.2
Q ss_pred CCCCcHHHHHHHH
Q 046115 1 MGGIGKTTLAQFA 13 (505)
Q Consensus 1 ~~G~GKT~LA~~~ 13 (505)
++|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5899999999999
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.32 E-value=0.48 Score=40.24 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 9 ~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 9 IPGVGKSTVLAKVKE 23 (194)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 281
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=85.31 E-value=0.82 Score=44.98 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=40.2
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCc-eEEEEeCCCC-CHHHHHHHHHHHcCC-------CCCCChhcHHH--------HH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEK-RTWVCVSEPF-DEFRIARAIIESLTP-------GSAKDLVEFQS--------LM 63 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~l~~~l~~-------~~~~~~~~~~~--------~~ 63 (505)
+|+|||+|| ..+++ .. +-+. ++++-+++.. +..++...+...-.. ...+++..... ..
T Consensus 171 ~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (502)
T 2qe7_A 171 RQTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMG 246 (502)
T ss_dssp SSSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999996 57776 33 2343 3566677654 344555555442110 11112111111 11
Q ss_pred HHHHHHcCCceEEEEEeCC
Q 046115 64 QHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv 82 (505)
+.++. .++.+||++||+
T Consensus 247 Eyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 247 EYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHT--TTCEEEEEEECH
T ss_pred HHHHH--cCCcEEEEEecH
Confidence 22322 578999999998
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.26 E-value=0.32 Score=41.18 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKst~a~~La~ 27 (185)
T 3trf_A 13 LMGAGKTSVGSQLAK 27 (185)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 283
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.14 E-value=0.55 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. ....+=..++-++.....+.
T Consensus 11 gG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 11 GGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHH
T ss_pred CCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCH
Confidence 89999999999987 45443335667777654433
No 284
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=85.13 E-value=3.1 Score=40.93 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcCccccc-CCCceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+.++++ .+.+ +-+.++++-+++.. +..++..++..
T Consensus 174 ~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 174 AGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp SSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 69999999999988 4433 33567788777765 45566666654
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.05 E-value=0.33 Score=41.73 Aligned_cols=15 Identities=40% Similarity=0.366 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 33 ~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 33 YMGAGKTTLGKAFAR 47 (199)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999997
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.75 E-value=0.36 Score=40.30 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.++.
T Consensus 12 ~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 287
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.70 E-value=0.67 Score=40.57 Aligned_cols=31 Identities=23% Similarity=0.040 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
.||+||||+|..++. ....+=..++.+++..
T Consensus 14 kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 14 APGVGKTYAMLQAAH--AQLRQGVRVMAGVVET 44 (228)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred CCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCC
Confidence 389999999988887 4433322344455544
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.61 E-value=0.37 Score=40.43 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKsTla~~La~ 26 (175)
T 1via_A 12 FMGSGKSTLARALAK 26 (175)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.28 E-value=0.52 Score=39.92 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 21 ~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 21 LPGSGKTTIATRLAD 35 (186)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.08 E-value=0.39 Score=40.74 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 11 ~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 11 VPGVGSTTSSQLAMD 25 (192)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.88 E-value=0.4 Score=40.81 Aligned_cols=15 Identities=40% Similarity=0.321 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 13 HPATGKTTLSQALAT 27 (193)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 292
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=83.79 E-value=1.2 Score=44.01 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCc-eEEEEeCCCC-CHHHHHHHHHHHc--C-----CCCCCChhcHHH--------HH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEK-RTWVCVSEPF-DEFRIARAIIESL--T-----PGSAKDLVEFQS--------LM 63 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~l~~~l--~-----~~~~~~~~~~~~--------~~ 63 (505)
+|+|||+|| ..+++ .. +-+. ++++-+++.. +..++...+...= . ....+++..... ..
T Consensus 184 ~g~GKT~Lal~~I~~--~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 259 (515)
T 2r9v_A 184 RQTGKTAIAIDTIIN--QK--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMG 259 (515)
T ss_dssp TTSSHHHHHHHHHHT--TT--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH--hh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999996 57777 33 2443 3566677654 3445555554411 0 011122211111 11
Q ss_pred HHHHHHcCCceEEEEEeCC
Q 046115 64 QHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv 82 (505)
+.++. .++.+||++||+
T Consensus 260 Eyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 260 EYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp HHHHT--TTCEEEEEEETH
T ss_pred HHHHH--cCCcEEEEeccH
Confidence 22222 578999999998
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.61 E-value=0.41 Score=41.20 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 26 ~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 26 VSGSGKSSVGEAIAE 40 (202)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 294
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.51 E-value=0.73 Score=41.04 Aligned_cols=35 Identities=26% Similarity=0.134 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ..++.=..++-|+.....+..
T Consensus 9 GGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 9 GGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp SSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcChH
Confidence 89999999999987 454433456667766555443
No 295
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=83.19 E-value=1.5 Score=42.58 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCC----ceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFE----KRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+.++++ ....+.+ .++++-+++.. +..++..++..
T Consensus 160 ~G~GKt~L~~~Ia~--~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 160 SGLPHKELAAQIAR--QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp TTSCHHHHHHHHHH--HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHH--HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 69999999999988 3333222 45566666543 44455555444
No 296
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.08 E-value=11 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||++..++.
T Consensus 108 ~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 108 IQGSGKTTTVAKLAR 122 (443)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 379999999988876
No 297
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.96 E-value=3.6 Score=38.52 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIES 47 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 47 (505)
.+|+||||||..++. ....+=..++|++... +...+...++..
T Consensus 54 ~pG~GKTt~al~ia~--~~a~~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVL--SALNDDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp CTTSCHHHHHHHHHH--HHHHTTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 379999999999987 3333223566777643 345555555443
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.88 E-value=0.47 Score=39.96 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 19 ~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 19 TPGVGKTTLGKELAS 33 (180)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.67 E-value=0.49 Score=39.27 Aligned_cols=15 Identities=40% Similarity=0.284 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 15 ~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 15 FMGSGKSSLAQELGL 29 (168)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=82.57 E-value=0.49 Score=40.64 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 8 ~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 8 TVGAGKSTISAEISK 22 (205)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHH
Confidence 579999999999987
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.46 E-value=0.49 Score=42.55 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||||+.++.
T Consensus 9 ~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQ 23 (253)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHh
Confidence 579999999999987
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.46 E-value=0.49 Score=40.71 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 33 ~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 33 LSGSGKSTLACALNQ 47 (200)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.29 E-value=1.8 Score=50.20 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHHHHHHHHHc-CCceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSLMQHIEECV-AGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l-~~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++.....+... +..++..... ...+.++..+.++... ....-
T Consensus 391 ~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~ 463 (2050)
T 3cmu_A 391 PESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 463 (2050)
T ss_dssp CTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 479999999999987 4444334678999888777642 4555532211 2344555555555433 23456
Q ss_pred EEEEeCCCC
Q 046115 76 LLVLDDVWN 84 (505)
Q Consensus 76 LlvlDdv~~ 84 (505)
+||+|.+..
T Consensus 464 lIVIDSL~a 472 (2050)
T 3cmu_A 464 VIVVDSVAA 472 (2050)
T ss_dssp EEEESCGGG
T ss_pred EEEECCHHH
Confidence 999999854
No 304
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.27 E-value=0.8 Score=53.09 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHc-CCceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECV-AGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l-~~~r~ 75 (505)
++|+|||+||.+++. +...+=..++|+++....+... ++.++.... ......++....+.+.. ..+.-
T Consensus 1435 ppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp CTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 589999999999987 4433334577898888877655 344442111 01122334444444433 24567
Q ss_pred EEEEeCCC
Q 046115 76 LLVLDDVW 83 (505)
Q Consensus 76 LlvlDdv~ 83 (505)
+||+|.+.
T Consensus 1508 lVVIDsi~ 1515 (2050)
T 3cmu_A 1508 VIVVDSVA 1515 (2050)
T ss_dssp EEEESCGG
T ss_pred EEEEcChh
Confidence 99999983
No 305
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=82.23 E-value=0.21 Score=47.40 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhcCcccccCC-Cc-eEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF-EK-RTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f-~~-~~wv~~~~~ 34 (505)
+|+|||+|+.++++ .+..+. +. ++++-+++.
T Consensus 184 ~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred CCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 69999999999988 544332 32 245556553
No 306
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=82.13 E-value=0.52 Score=39.80 Aligned_cols=15 Identities=33% Similarity=0.182 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQ 26 (186)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999986
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.00 E-value=0.53 Score=39.37 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 16 ~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 16 VSGSGKSAVASEVAH 30 (175)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.95 E-value=0.53 Score=39.75 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 10 ~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAK 24 (184)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 309
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.82 E-value=0.55 Score=39.08 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 10 ~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 10 ARGCGMTTVGRELAR 24 (173)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 310
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.73 E-value=1.3 Score=40.96 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCC--CCChhcHHHH-HHHHHHHcCCceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGS--AKDLVEFQSL-MQHIEECVAGKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~--~~~~~~~~~~-~~~l~~~l~~~r~L 76 (505)
.+|+||||++..++. ..+..-..+.+++..... ...+.+..+....+.+. .....+.... .+.+...+....-+
T Consensus 112 ~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dv 189 (306)
T 1vma_A 112 VNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 189 (306)
T ss_dssp CTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCChHHHHHHHHHH--HHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCE
Confidence 379999999999987 444332234455543221 11223344455443221 1111222222 23344444444457
Q ss_pred EEEeCCCC
Q 046115 77 LVLDDVWN 84 (505)
Q Consensus 77 lvlDdv~~ 84 (505)
+|+|-...
T Consensus 190 vIiDtpg~ 197 (306)
T 1vma_A 190 VIIDTAGR 197 (306)
T ss_dssp EEEEECCC
T ss_pred EEEECCCc
Confidence 88887643
No 311
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.72 E-value=2 Score=36.68 Aligned_cols=112 Identities=19% Similarity=0.136 Sum_probs=70.5
Q ss_pred hhHHhhcCcccceEEecccccCCccccccc-----cCccccCCCCcceeeccCCcccc-----ccchhhhcCCCCcEEec
Q 046115 375 LPQLFEKLTCLRALELQVRESWPRNNLIKE-----IPTNIEKLLHLKYLNLKGQKKIE-----KLPETLCELYNLERLNV 444 (505)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l 444 (505)
+...+.+-++|+.|+|+ +++.++. +-..+..-+.|+.|+|++|. ++ .+...+..-..|+.|+|
T Consensus 33 l~~ll~~n~~L~~L~L~------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 33 INRLREDDTDLKEVNIN------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HHHHHTTCSSCCEEECT------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HHHHHhcCCCccEEECC------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEec
Confidence 44445667789999998 2224432 33445666789999999999 54 33344556688999999
Q ss_pred CCCcCcc----ccchhccccccCceeecCCCcc--cc-----cccccccCCccCCcccee
Q 046115 445 DDCQNLR----ELPRGIGKLRKLMYLHNEDTGC--LR-----YLPAGIGELIRLRRVREF 493 (505)
Q Consensus 445 ~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~--~~-----~~p~~i~~l~~L~~L~~~ 493 (505)
++|.... .+=..+..-+.|++|++++|.. ++ .+...+..-+.|+.|++.
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 9998321 1223455567899999986531 22 122233344566666653
No 312
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.37 E-value=0.59 Score=38.71 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSR 22 (168)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.30 E-value=0.44 Score=40.53 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++++..
T Consensus 9 PSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFA 23 (186)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.25 E-value=0.58 Score=40.35 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 20 ~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 20 PSGVGKGTLIKKVLS 34 (204)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 315
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.22 E-value=12 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.273 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||++..++.
T Consensus 105 ~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAY 119 (433)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999886
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.18 E-value=0.63 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVS 32 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~ 32 (505)
++|+||||||+.++. .. +.++++..
T Consensus 37 ~~GsGKSTl~~~L~~--~~-----g~~~i~~d 61 (200)
T 4eun_A 37 VSGSGKTTIAHGVAD--ET-----GLEFAEAD 61 (200)
T ss_dssp CTTSCHHHHHHHHHH--HH-----CCEEEEGG
T ss_pred CCCCCHHHHHHHHHH--hh-----CCeEEccc
Confidence 479999999999987 33 44566543
No 317
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.16 E-value=0.62 Score=39.53 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 479999999999975
No 318
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.92 E-value=0.89 Score=40.29 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
.+|+||||||.+++. .....=..++|++....
T Consensus 31 ~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLW--NGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CTTSSHHHHHHHHHH--HHHHTTCCEEEEESSSC
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEEccCC
Confidence 479999999988876 33333346778876543
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.91 E-value=0.61 Score=39.49 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 18 ~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 18 TPGTGKTSMAEMIAA 32 (184)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 320
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=80.87 E-value=1.7 Score=42.92 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=25.9
Q ss_pred CCCcHHHHH-HHHhcCccccc------CCCc-eEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLA-QFAYNNGDVER------NFEK-RTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~------~f~~-~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|| ..+++ +... +-+. ++++-+++.. +..++...+..
T Consensus 171 ~g~GKT~Lal~~I~~--q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 171 RQTGKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp TTSSHHHHHHHHHHH--THHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHH--HHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 699999996 56666 3331 2343 5577777654 34455555544
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.87 E-value=0.61 Score=39.61 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 11 ~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 11 GPGAGKGTQCARIVE 25 (196)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.85 E-value=0.62 Score=39.26 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.+..
T Consensus 13 psGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 13 AHGVGRRHIKNTLIT 27 (180)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 323
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.66 E-value=3.2 Score=38.13 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHhcCccccc-CCCceEEEEeCCC-CCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEP-FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLV 78 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~Llv 78 (505)
.+|+||||++..++. .... .=..+..++.... ....+.+.......+.+.... .+.......+. .+ ...=++|
T Consensus 113 ~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~-~~~~~l~~al~-~~-~~~dlvI 187 (296)
T 2px0_A 113 STGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC-YTKEEFQQAKE-LF-SEYDHVF 187 (296)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC-SSHHHHHHHHH-HG-GGSSEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec-CCHHHHHHHHH-Hh-cCCCEEE
Confidence 379999999999987 3432 1123445554322 223333444444443222111 12233333333 23 3445788
Q ss_pred EeCC
Q 046115 79 LDDV 82 (505)
Q Consensus 79 lDdv 82 (505)
+|-.
T Consensus 188 iDT~ 191 (296)
T 2px0_A 188 VDTA 191 (296)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8854
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.47 E-value=0.64 Score=40.16 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 12 IDGSGKSSQATLLKD 26 (213)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 325
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.38 E-value=1.1 Score=40.33 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..+.+=..++-|+....
T Consensus 10 GGvGKTT~a~nLA~--~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 10 GGIGKSTTTQNLTS--GLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp TTSSHHHHHHHHHH--HHHTTTCCEEEEEECTT
T ss_pred CCCcHHHHHHHHHH--HHHHCCCcEEEEcCCCC
Confidence 89999999998887 44443234566776543
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.34 E-value=0.47 Score=39.96 Aligned_cols=15 Identities=33% Similarity=0.261 Sum_probs=9.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKST~a~~La~ 27 (183)
T 2vli_A 13 PFGVGKTHTAHTLHE 27 (183)
T ss_dssp CC----CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999986
No 327
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.31 E-value=4.4 Score=39.64 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIE 46 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 46 (505)
.+|+||||||..++. ....+=..++|++...+.. .+...++.
T Consensus 205 ~pG~GKTtlal~ia~--~~a~~g~~vl~fSlEms~~--ql~~R~~~ 246 (444)
T 3bgw_A 205 RPSMGKTAFALKQAK--NMSDNDDVVNLHSLEMGKK--ENIKRLIV 246 (444)
T ss_dssp CSSSSHHHHHHHHHH--HHHHTTCEEEEECSSSCTT--HHHHHHHH
T ss_pred CCCCChHHHHHHHHH--HHHHcCCEEEEEECCCCHH--HHHHHHHH
Confidence 379999999999987 3433323566777665433 34444443
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.21 E-value=0.65 Score=41.90 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAK 26 (260)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.11 E-value=1.9 Score=49.36 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCC----CChhcHHHHHHHHHHHc-CCceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSA----KDLVEFQSLMQHIEECV-AGKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l-~~~r~ 75 (505)
.+|+||||||.+++. .....=..++|++...+.+... +..++.... ....+.++..+.+.... ..+.-
T Consensus 391 ~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~ 463 (1706)
T 3cmw_A 391 PESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 463 (1706)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 379999999999987 4444435788999888877642 445543211 11234455555554433 23456
Q ss_pred EEEEeCCCCC
Q 046115 76 LLVLDDVWNE 85 (505)
Q Consensus 76 LlvlDdv~~~ 85 (505)
++|+|.+...
T Consensus 464 lVVIDSL~al 473 (1706)
T 3cmw_A 464 VIVVDSVAAL 473 (1706)
T ss_dssp EEEESCSTTC
T ss_pred EEEECCHHHh
Confidence 9999998553
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=80.04 E-value=0.68 Score=39.42 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 17 ~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.93 E-value=0.69 Score=39.73 Aligned_cols=15 Identities=33% Similarity=0.146 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 28 ~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAE 42 (201)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 332
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.78 E-value=7.2 Score=38.84 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCHHHHHHHHHHHc
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFDEFRIARAIIESL 48 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~l 48 (505)
.+|+|||+||.+++. ....+. ..++|++...+ ..++...++...
T Consensus 250 ~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~s--~~~l~~r~~~~~ 294 (503)
T 1q57_A 250 GSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEES--VEETAEDLIGLH 294 (503)
T ss_dssp SSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHH--HHHHhcCCcEEEEeccCC--HHHHHHHHHHHH
Confidence 379999999999987 444332 35778877654 456666555433
No 333
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.65 E-value=0.71 Score=39.41 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 20 ~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVE 34 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 334
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.48 E-value=2.8 Score=40.66 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 266 ~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLV 280 (416)
T ss_dssp CTTSSHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 335
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.34 E-value=1.4 Score=41.07 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ..++.=..++-|+.....+..
T Consensus 23 GGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 23 GGVGKTTISAATAL--WMARSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECCSSCCHH
T ss_pred CCchHHHHHHHHHH--HHHHCCCcEEEEeCCCCcCHH
Confidence 89999999999887 554443345566655544443
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=79.28 E-value=1.7 Score=36.84 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 8 ~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQ 22 (197)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.14 E-value=0.75 Score=40.18 Aligned_cols=15 Identities=33% Similarity=0.191 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 12 ~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 12 PPGAGKGTQAPNLQE 26 (220)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 338
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=79.07 E-value=1.1 Score=44.06 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCc-eEEEEeCCCCC-HHHHHHHHHHH--cCC-----CCCCChhcH-------H-HHH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEK-RTWVCVSEPFD-EFRIARAIIES--LTP-----GSAKDLVEF-------Q-SLM 63 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~l~~~--l~~-----~~~~~~~~~-------~-~~~ 63 (505)
+|+|||+|| ..+++ ... -+. ++++-+++... ..++...+... +.. ...+++... . ...
T Consensus 172 ~g~GKT~Lal~~I~~--~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 247 (507)
T 1fx0_A 172 RQTGKTAVATDTILN--QQG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 247 (507)
T ss_dssp SSSSHHHHHHHHHHT--CCT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH--hhc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999996 57777 332 343 35666776543 33333333321 000 011111111 1 112
Q ss_pred HHHHHHcCCceEEEEEeCC
Q 046115 64 QHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv 82 (505)
+.++. .++.+||++||+
T Consensus 248 Eyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 248 EYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHH--TTCEEEEEEECH
T ss_pred HHHHH--cCCcEEEEEecH
Confidence 33433 589999999998
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.90 E-value=1 Score=38.96 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 17 ~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVE 31 (215)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999997
No 340
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.90 E-value=15 Score=44.47 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=69.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLD 80 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 80 (505)
++|+|||++|+.+... . ..+ ..+.++++...+...++..+-..+.........-. .-.-.++++++.+|
T Consensus 1275 PpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~-------~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1275 PPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL-------LPKSDIKNLVLFCD 1343 (2695)
T ss_dssp STTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE-------EEBSSSSCEEEEEE
T ss_pred CCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc-------cCCCCCceEEEEec
Confidence 4799999999777662 2 222 34467777777776666555554431100000000 00014578899999
Q ss_pred CCCCCCcc------ChhHHHHhhcCCC-----C-------CcEEEEEeCchH------HHH-HhCCcceEeCCCCChhhH
Q 046115 81 DVWNEDYY------KWEPFYKCLKNSL-----H-------ESKILITTRKET------VAR-IMGSTHVISVNVLSEMEC 135 (505)
Q Consensus 81 dv~~~~~~------~~~~~~~~~~~~~-----~-------~~~iLiTtr~~~------~~~-~~~~~~~~~l~~l~~~ea 135 (505)
|+.-.... ..+.+.+.+...+ . +..++.++..+. +.. ......++.++..+.++-
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSL 1423 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHH
T ss_pred ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHH
Confidence 97443322 2333333332211 1 234444554331 111 123346788998998888
Q ss_pred HHHHHHhh
Q 046115 136 WSVFQSLA 143 (505)
Q Consensus 136 ~~Lf~~~~ 143 (505)
..+|....
T Consensus 1424 ~~I~~~il 1431 (2695)
T 4akg_A 1424 SQIYEIYY 1431 (2695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 341
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.74 E-value=0.78 Score=38.94 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 8 ~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYE 22 (195)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 342
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.69 E-value=1.7 Score=43.64 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
.+|+|||||++.++. .....=..++++....
T Consensus 289 ~~GsGKSTLl~~l~g--~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVE--NACANKERAILFAYEE 319 (525)
T ss_dssp CTTSSHHHHHHHHHH--HHHTTTCCEEEEESSS
T ss_pred CCCCCHHHHHHHHHH--HHHhCCCCEEEEEEeC
Confidence 379999999999987 3322211345666544
No 343
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.61 E-value=0.87 Score=38.35 Aligned_cols=64 Identities=5% Similarity=0.049 Sum_probs=33.4
Q ss_pred cCCceEEEEEeCCC--C-CCccChhHHHHhhcCCCCCcEEEEEe---CchHHHHH-hCC--cceEeCCCCChhhH
Q 046115 70 VAGKKFLLVLDDVW--N-EDYYKWEPFYKCLKNSLHESKILITT---RKETVARI-MGS--THVISVNVLSEMEC 135 (505)
Q Consensus 70 l~~~r~LlvlDdv~--~-~~~~~~~~~~~~~~~~~~~~~iLiTt---r~~~~~~~-~~~--~~~~~l~~l~~~ea 135 (505)
+..++-++++|.+. . .+......+...+.. .+..+|++| .+...... +.. ..++++...+.++.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 55566799999942 2 122223334444443 344466666 24333333 232 45777777665554
No 344
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.56 E-value=0.7 Score=42.39 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 41 ~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFE 55 (287)
T ss_dssp CTTSCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 345
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=78.54 E-value=1.3 Score=39.89 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ..+ +=..++-|++.......
T Consensus 37 GGvGKTT~a~~LA~--~la-~g~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 37 GGVGKSTSAIILAT--LLS-KNNKVLLIDMDTQASIT 70 (267)
T ss_dssp SSSCHHHHHHHHHH--HHT-TTSCEEEEEECTTCHHH
T ss_pred CCchHHHHHHHHHH--HHH-CCCCEEEEECCCCCCHH
Confidence 89999999999987 555 32456677776554433
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.49 E-value=0.8 Score=40.23 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 15 ~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 15 APGSGKGTVSSRITT 29 (227)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 347
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=78.40 E-value=1.5 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFD 36 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~ 36 (505)
||+||||+|..++. ..+..=..++-|+.....+
T Consensus 25 GGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 25 GGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 89999999998887 4444434566677664433
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=78.35 E-value=0.82 Score=39.28 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 479999999999986
No 349
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=78.33 E-value=1.4 Score=38.71 Aligned_cols=30 Identities=27% Similarity=0.091 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
||+||||+|..++. ...++-..++-|+...
T Consensus 12 gGvGKTt~a~~LA~--~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSV--ALGDRGRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECCT
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEeCCC
Confidence 89999999999987 5554434566777654
No 350
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.23 E-value=1.6 Score=38.70 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHhcCcccccC-CCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERN-FEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..... =..++-|+....
T Consensus 14 GGvGKTt~a~~LA~--~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 14 GGDGGSCIAANFAF--ALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp TTSSHHHHHHHHHH--HHTTSTTCCEEEEECCTT
T ss_pred CCcchHHHHHHHHH--HHHhCcCCCEEEEECCCC
Confidence 89999999999987 55554 234566776543
No 351
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.23 E-value=0.98 Score=39.08 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 16 psGsGKsTl~~~L~~ 30 (208)
T 3tau_A 16 PSGVGKGTVREAVFK 30 (208)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999987
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.22 E-value=0.81 Score=39.74 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIE 22 (216)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 353
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.13 E-value=0.84 Score=38.08 Aligned_cols=22 Identities=5% Similarity=-0.084 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCceEEEEEeCC
Q 046115 61 SLMQHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 61 ~~~~~l~~~l~~~r~LlvlDdv 82 (505)
+..-.+.+.+..+.-+++||.-
T Consensus 89 ~qrv~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 89 KPLIEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp HHHHHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHHHHcCCcEEEEEEeCC
Confidence 3334566667777888888875
No 354
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.13 E-value=1 Score=38.12 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+|||||++.++.
T Consensus 9 psGaGKsTl~~~L~~ 23 (186)
T 3a00_A 9 PSGTGKSTLLKKLFA 23 (186)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 355
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.10 E-value=1.4 Score=40.29 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-PFDEFRI 40 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~ 40 (505)
||+||||+|..++. ..+..=..++-|+... ..+....
T Consensus 14 GGvGKTT~a~nLA~--~La~~G~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 14 GGAGKSTIAVHLVT--ALLYGGAKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp SCTTHHHHHHHHHH--HHHHTTCCEEEEECCTTTCHHHHH
T ss_pred CCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCCCHHHH
Confidence 89999999999987 4544323455677666 5554443
No 356
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.94 E-value=0.91 Score=38.95 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+|||||++.++.
T Consensus 15 p~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 15 PSGAGKTSLVRALVK 29 (205)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999987
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.83 E-value=0.85 Score=39.89 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 13 APASGKGTQCELIKT 27 (222)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 358
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=77.67 E-value=1.5 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE-PFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~-~~~~ 37 (505)
||+||||+|..++. ..+.+=..++-|+... ..+.
T Consensus 12 gGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~~~ 46 (260)
T 3q9l_A 12 GGVGKTTSSAAIAT--GLAQKGKKTVVIDFAIGLRNL 46 (260)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECCCSSCCH
T ss_pred CCCcHHHHHHHHHH--HHHhCCCcEEEEECCCCCCCh
Confidence 89999999999887 4544323456677664 3444
No 359
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=77.63 E-value=1.4 Score=40.70 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
||+||||+|..++. ..+..=..++-|+.....
T Consensus 50 GGvGKTT~a~nLA~--~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 50 GGIGKSTTSSNLSA--AFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEEESSSC
T ss_pred CCccHHHHHHHHHH--HHHHCCCeEEEEeCCCCC
Confidence 89999999998887 454432345667765433
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.63 E-value=0.88 Score=38.53 Aligned_cols=15 Identities=27% Similarity=0.111 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 14 ~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 14 GPGSGKGTQCANIVR 28 (194)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.56 E-value=0.95 Score=38.96 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 362
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.55 E-value=0.87 Score=39.55 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 8 LPGAGKGTQGERIVE 22 (216)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999986
No 363
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.51 E-value=0.88 Score=39.09 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.++.
T Consensus 14 ~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 14 PSGVGKGTVRKRIFE 28 (207)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=77.47 E-value=0.88 Score=39.29 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 18 ~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVE 32 (212)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=77.34 E-value=0.9 Score=38.99 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 23 ~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVK 37 (203)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 366
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=77.27 E-value=1.9 Score=41.86 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHhcCcccc--------cCCC-ceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVE--------RNFE-KRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+.++++..... ++=+ .++++-+++.. +..++..++..
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 6999999999998842221 1112 44466666543 34455555433
No 367
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=77.22 E-value=1.3 Score=40.53 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..+..=..++-|+....
T Consensus 11 GGvGKTT~a~nLA~--~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 11 GGIGKSTTTQNLVA--ALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEEECSS
T ss_pred CcCcHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 89999999999887 44433224556665543
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=77.13 E-value=0.97 Score=40.26 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 35 ~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999994
No 369
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=77.06 E-value=1.2 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. ..+..=..++-|++....+.
T Consensus 153 GGvGKTT~a~nLA~--~La~~g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 153 GGVGTSTVAAACAI--AHANMGKKVFYLNIEQCGTT 186 (373)
T ss_dssp TTSSHHHHHHHHHH--HHHHHTCCEEEEECCTTCCH
T ss_pred CCChHHHHHHHHHH--HHHhCCCCEEEEECCCCCCH
Confidence 89999999998887 45444335667887644433
No 370
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.93 E-value=0.91 Score=39.27 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||||++.++.
T Consensus 30 ~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 30 APGSGKSTLSNPLAA 44 (208)
T ss_dssp CTTSCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 371
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=76.89 E-value=3.8 Score=40.27 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCCcHHHHH-HHHhcCcccccCCCc-eEEEEeCCCC-CHHHHHHHHHHH--cCC-----CCCCChhcHHH--------HH
Q 046115 2 GGIGKTTLA-QFAYNNGDVERNFEK-RTWVCVSEPF-DEFRIARAIIES--LTP-----GSAKDLVEFQS--------LM 63 (505)
Q Consensus 2 ~G~GKT~LA-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~l~~~--l~~-----~~~~~~~~~~~--------~~ 63 (505)
+|+|||+|| ..+++ + .+-+. ++++-+++.. +..++...+... +.. ...+++..... ..
T Consensus 171 ~g~GKT~l~l~~I~n--~--~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (513)
T 3oaa_A 171 RQTGKTALAIDAIIN--Q--RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246 (513)
T ss_dssp SSSSHHHHHHHHHHT--T--SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHh--h--ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHH
Confidence 599999997 56666 3 22333 4577777754 344555554442 111 01112211111 11
Q ss_pred HHHHHHcCCceEEEEEeCC
Q 046115 64 QHIEECVAGKKFLLVLDDV 82 (505)
Q Consensus 64 ~~l~~~l~~~r~LlvlDdv 82 (505)
+.+++ .++.+||++||+
T Consensus 247 Eyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 247 EYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHH--TTCEEEEEEETH
T ss_pred HHHHh--cCCCEEEEecCh
Confidence 22332 579999999998
No 372
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.82 E-value=0.94 Score=39.32 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 8 APVAGKGTQAQFIME 22 (214)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.64 E-value=3.1 Score=40.31 Aligned_cols=29 Identities=24% Similarity=0.102 Sum_probs=19.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
.+|+||||++..++. .....=..+..++.
T Consensus 106 ~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 106 LQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (425)
T ss_dssp CTTSSHHHHHHHHHH--HHHTTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEeec
Confidence 479999999999987 44433223444544
No 374
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.60 E-value=10 Score=36.94 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFDEFRIARAIIE 46 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~ 46 (505)
.+|+|||+||..++. ...... ..++|++...+ ...+...++.
T Consensus 208 ~pg~GKT~lal~ia~--~~a~~~g~~vl~~slE~~--~~~l~~R~~~ 250 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQ--NAALKEGVGVGIYSLEMP--AAQLTLRMMC 250 (444)
T ss_dssp CTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSSC--HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCeEEEEECCCC--HHHHHHHHHH
Confidence 379999999999987 343322 35778877643 4455555554
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.47 E-value=1 Score=39.31 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 13 APGSGKGTQCEFIKK 27 (217)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 376
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=76.43 E-value=0.99 Score=39.48 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 13 ~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 13 PSGAGKGTLCKAMAE 27 (227)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.42 E-value=1 Score=38.64 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 12 ~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 12 LDKSGKTTQCMNIME 26 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.41 E-value=1 Score=37.76 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 13 ~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 13 LSGAGKTTVSMALEE 27 (179)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 379
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=76.31 E-value=1.6 Score=42.67 Aligned_cols=45 Identities=7% Similarity=0.002 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCC-CHHHHHHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNF--EKRTWVCVSEPF-DEFRIARAIIE 46 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~l~~ 46 (505)
+|+|||+|+..+++.....+.- +.++++-+++.. +..++..++..
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 6999999999998843221111 245566666543 44555555554
No 380
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=76.30 E-value=6.3 Score=39.31 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH-HHHHHH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE-FRIARA 43 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 43 (505)
+|+|||+|+.++++ .. +-+.++++-+++.... .++..+
T Consensus 236 ~g~GKT~L~~~ia~--~~--~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 236 AGSGKTVTQHQLAK--WS--DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp CSHHHHHHHHHHHH--HS--SCSEEEEEECCSSSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHh--cc--CCCEEEEEEecccHHHHHHHHHH
Confidence 68999999999887 22 2246678888876544 344444
No 381
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=76.14 E-value=1.1 Score=40.15 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..+..=..++-|+....
T Consensus 16 GGvGKTt~a~~LA~--~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 16 GGVGKTTTAINLAA--YLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCHHHHHHHHHHHH--HHHHTTCCEEEEECCTT
T ss_pred CCchHHHHHHHHHH--HHHHCCCCEEEEECCCC
Confidence 89999999999987 55444234566776544
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.11 E-value=3.5 Score=37.85 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHHHHHHcCCCC--CCChhcHHHHHHHHHHHcC-CceEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF-DEFRIARAIIESLTPGS--AKDLVEFQSLMQHIEECVA-GKKFL 76 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~l~~~l~-~~r~L 76 (505)
.+|+||||++..++. .....=..+.+++..... .....+..+....+.+. .....+..+......+.++ +.-=+
T Consensus 106 ~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ 183 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEI 183 (297)
T ss_dssp SSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 479999999999987 444332345566644322 22333444444443221 1111233333322333332 23237
Q ss_pred EEEeCCCC
Q 046115 77 LVLDDVWN 84 (505)
Q Consensus 77 lvlDdv~~ 84 (505)
+|+|-...
T Consensus 184 ViIDTpg~ 191 (297)
T 1j8m_F 184 IIVDTAGR 191 (297)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 78887643
No 383
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=75.94 E-value=8.7 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNF-EKRTWVCVSEPFDEFRIARAII 45 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~ 45 (505)
.+|+||||||..++. ...... ..++|++...+ ...+...++
T Consensus 211 ~pG~GKTtl~l~ia~--~~~~~~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQ--NVATKTNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp CTTSCHHHHHHHHHH--HHHHHSSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCCC--HHHHHHHHH
Confidence 379999999999987 443322 35778876543 344554443
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.82 E-value=1.1 Score=39.35 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 8 ~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKD 22 (223)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 385
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=75.72 E-value=1.8 Score=38.86 Aligned_cols=30 Identities=27% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
||+||||+|..++. ....+-..++-|+...
T Consensus 12 gGvGKTt~a~~LA~--~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGV--ALAQLGHDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHH--HHHhCCCcEEEEECCC
Confidence 89999999999987 5544433466677654
No 386
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=75.68 E-value=1.3 Score=39.85 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..+..=..++-|+....
T Consensus 28 GGvGKTT~a~nLA~--~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 28 GGVGKSTVTALLAV--HYARQGKKVGILDADFL 58 (262)
T ss_dssp SCTTHHHHHHHHHH--HHHHTTCCEEEEECCSS
T ss_pred CCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCC
Confidence 89999999998887 44443224556765543
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.66 E-value=1.1 Score=38.48 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 29 ~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQK 43 (207)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.62 E-value=1.6 Score=36.36 Aligned_cols=15 Identities=33% Similarity=0.158 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||+.+++.
T Consensus 12 ~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVA 26 (169)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.59 E-value=2.7 Score=38.49 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC-ceEEEEeC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE-KRTWVCVS 32 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~-~~~wv~~~ 32 (505)
.+|+|||||++.++. .....-. .++|++..
T Consensus 43 ~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 43 GSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLE 73 (296)
T ss_dssp STTSSHHHHHHHHHH--HHHHTSCCCEEEEESS
T ss_pred CCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCc
Confidence 379999999999987 3433322 46677654
No 390
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=75.40 E-value=1.9 Score=39.65 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
||+||||+|..++. ..+..=..++-|+.....
T Consensus 46 GGvGKTT~a~nLA~--~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 46 GGVGKSKLSTMFAY--LTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SSSSHHHHHHHHHH--HHHHTTCCEEEEEECTTC
T ss_pred CCchHHHHHHHHHH--HHHhCCCeEEEEeCCCCC
Confidence 89999999999887 444332345567766543
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.93 E-value=1.1 Score=39.41 Aligned_cols=15 Identities=33% Similarity=0.173 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 24 ~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAK 38 (233)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.91 E-value=1.1 Score=38.70 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 33 ~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 33 LSASGKSTLAVELEH 47 (211)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.83 E-value=3.3 Score=47.44 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCC----ChhcHHHHHHHHHHHcC-CceE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAK----DLVEFQSLMQHIEECVA-GKKF 75 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~-~~r~ 75 (505)
+.|+||||||.+++. +..+.=...+|++..+..+..- ++.++..... .+..-++........++ +..-
T Consensus 1439 ~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1439 PESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 368999999999987 5555556677999998888754 6666644321 23333555555555553 3466
Q ss_pred EEEEeCC
Q 046115 76 LLVLDDV 82 (505)
Q Consensus 76 LlvlDdv 82 (505)
++|+|-|
T Consensus 1512 ~vvvDsv 1518 (1706)
T 3cmw_A 1512 VIVVDSV 1518 (1706)
T ss_dssp EEEESCS
T ss_pred EEEEccH
Confidence 8999998
No 394
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.81 E-value=2.6 Score=36.47 Aligned_cols=100 Identities=10% Similarity=-0.032 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCC-hhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 3 GIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKD-LVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 3 G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
|.||||.|...+.... .......+ +.... +...-...+...++...... ..+.. .+.+...++--+|++|.
T Consensus 38 gsGKTT~lL~~a~r~~-~~g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~dvViIDE 109 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQ-FAKQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEMDVIAIDE 109 (214)
T ss_dssp TSCHHHHHHHHHHHHH-HTTCCEEE-EECC-------------------CCEEECSSGG----GGGGGCCSSCCEEEECC
T ss_pred CCcHHHHHHHHHHHHH-HCCCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCCCEEEEEC
Confidence 8999999988877322 22233333 33221 11111123333333221100 01111 22223333334999999
Q ss_pred CCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 82 VWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
++--+...++. ...+.+ .+..|++|-++-
T Consensus 110 aQF~~~~~V~~-l~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 110 VQFFDGDIVEV-VQVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp GGGSCTTHHHH-HHHHHH--TTCEEEEEECSB
T ss_pred cccCCHHHHHH-HHHHhh--CCCEEEEEeccc
Confidence 86654334433 333322 367899999954
No 395
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=74.77 E-value=5.8 Score=34.94 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred cCCceEEEEEeCCCCCCccChhHHHHhhc
Q 046115 70 VAGKKFLLVLDDVWNEDYYKWEPFYKCLK 98 (505)
Q Consensus 70 l~~~r~LlvlDdv~~~~~~~~~~~~~~~~ 98 (505)
+.++--+||+|.+.......+..+...+.
T Consensus 189 ~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 189 LGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred hcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 34445699999997765555666555443
No 396
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=74.67 E-value=1.2 Score=40.04 Aligned_cols=15 Identities=40% Similarity=0.295 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.||+||||++..++.
T Consensus 22 kgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGR 36 (262)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 389999999999986
No 397
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=74.62 E-value=2.1 Score=40.43 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHhcCcccc--cCCCceEEEEeCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVE--RNFEKRTWVCVSEPF 35 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~--~~f~~~~wv~~~~~~ 35 (505)
||+||||+|..++. ..+ ..=..++-|+.....
T Consensus 27 GGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 27 GGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp TTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSC
T ss_pred CCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCC
Confidence 89999999999887 444 332345567665443
No 398
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.60 E-value=1.9 Score=39.19 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||..++.
T Consensus 38 ~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 38 PGGAGKSMLALQLAA 52 (279)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999886
No 399
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=74.60 E-value=1.9 Score=40.82 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSE 33 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~ 33 (505)
||+||||+|..++. ..+..=..++-|+...
T Consensus 35 GGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 35 GGVGKTTMSAATGV--YLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SSTTHHHHHHHHHH--HHHHSSCCEEEEECCT
T ss_pred CCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 89999999988887 4444322455566544
No 400
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=74.54 E-value=1.2 Score=38.34 Aligned_cols=15 Identities=47% Similarity=0.282 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 14 ~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 14 GTASGKTTLAQALAR 28 (211)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.32 E-value=0.87 Score=40.85 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 40 ~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQK 54 (253)
T ss_dssp CGGGTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.27 E-value=1.2 Score=37.98 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 16 ~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 16 NIGSGKSTVAALLRS 30 (203)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 403
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=74.21 E-value=14 Score=35.30 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHHHHHcCCCCCCChhcHHHHHHHHHHHcCCceEEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDD 81 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDd 81 (505)
+|+|||++|+.+... -...-...+-++++.-+ ...+..++...-. +......... .. +.... ..--|+||+
T Consensus 169 ~GtGK~~lAr~ih~~--s~r~~~~fv~v~~~~~~-~~~~~~elfg~~~-g~~tga~~~~--~g-~~~~a--~~gtlflde 239 (387)
T 1ny5_A 169 SGVGKEVVARLIHKL--SDRSKEPFVALNVASIP-RDIFEAELFGYEK-GAFTGAVSSK--EG-FFELA--DGGTLFLDE 239 (387)
T ss_dssp TTSSHHHHHHHHHHH--STTTTSCEEEEETTTSC-HHHHHHHHHCBCT-TSSTTCCSCB--CC-HHHHT--TTSEEEEES
T ss_pred CCcCHHHHHHHHHHh--cCCCCCCeEEEecCCCC-HHHHHHHhcCCCC-CCCCCccccc--CC-ceeeC--CCcEEEEcC
Confidence 699999999988762 22222233445555422 2222222222111 1111000000 00 01111 123678999
Q ss_pred CCCCCccChhHHHHhhcCCC-----------CCcEEEEEeCc
Q 046115 82 VWNEDYYKWEPFYKCLKNSL-----------HESKILITTRK 112 (505)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~-----------~~~~iLiTtr~ 112 (505)
+.+.......++...+.... ...+||.||..
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 97766555556666554321 24567777654
No 404
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=74.00 E-value=4.2 Score=37.31 Aligned_cols=29 Identities=24% Similarity=0.102 Sum_probs=19.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
.+|+||||++..++. ..+..=..+.+++.
T Consensus 106 ~~G~GKTT~~~~la~--~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 106 LQGSGKTTTAAKLAL--YYKGKGRRPLLVAA 134 (295)
T ss_dssp CTTTTHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCeEEEecC
Confidence 379999999999987 44433223445554
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.72 E-value=1.3 Score=37.80 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.+..
T Consensus 20 ~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 20 KIGTGKSTVCEILKN 34 (192)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 406
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.71 E-value=1.3 Score=39.45 Aligned_cols=15 Identities=27% Similarity=0.136 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 37 ~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 37 APGSGKGTQSLNLKK 51 (243)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 407
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=73.70 E-value=13 Score=37.70 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHcCCceEEEEEeCCCCC-CccChhHHHHhhcCCCCCcEEEEEeCchHHHHH
Q 046115 66 IEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLKNSLHESKILITTRKETVARI 118 (505)
Q Consensus 66 l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~~~~~~~~iLiTtr~~~~~~~ 118 (505)
+.+.+-.++-+++||+.... +...-..+.+.+.....|..+|++|-+......
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~ 544 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ 544 (582)
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 44555556678999997442 222223334434333235566666666555443
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.60 E-value=1.3 Score=39.65 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.++.
T Consensus 56 ~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 56 MMGSGKTTVGKIMAR 70 (250)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999987
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.36 E-value=3.4 Score=35.77 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 14 ~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 14 PEGAGKSTNRDYLAE 28 (213)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.32 E-value=2.2 Score=37.48 Aligned_cols=15 Identities=40% Similarity=0.518 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 34 ~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 34 PEGSGKTTVINEVYH 48 (229)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=73.31 E-value=1.3 Score=40.77 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 10 ~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 10 CPGSGKSTWAREFIA 24 (301)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 412
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.10 E-value=1.5 Score=37.61 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.+..
T Consensus 12 psGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999986
No 413
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=72.82 E-value=2 Score=40.82 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. ..+..=..++-|++....+.
T Consensus 11 GGvGKTT~a~nLA~--~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 11 GGVGKTTLSTNVAH--YFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp CCHHHHHHHHHHHH--HHHHTTCCEEEEECCTTCTT
T ss_pred CCCcHHHHHHHHHH--HHHhCCCcEEEEEcCCCCCh
Confidence 89999999999887 45443235667776655444
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=72.66 E-value=1.5 Score=37.83 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 28 pnGsGKSTLl~~l~g 42 (207)
T 1znw_A 28 PSAVGKSTVVRCLRE 42 (207)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 415
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=72.65 E-value=4.1 Score=35.76 Aligned_cols=53 Identities=13% Similarity=0.300 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHcCCceEEEEEeCCCCCCc-cChh-HHHHhhcCCCCCcEEEEEeC
Q 046115 58 EFQSLMQHIEECVAGKKFLLVLDDVWNEDY-YKWE-PFYKCLKNSLHESKILITTR 111 (505)
Q Consensus 58 ~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~-~~~~-~~~~~~~~~~~~~~iLiTtr 111 (505)
..+...+.+...+.+- -+||+|.++.... ..+. .....+....++.++++.|-
T Consensus 162 Tpg~l~~~l~~~l~~~-~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SA 216 (235)
T 3llm_A 162 TVGVLLRKLEAGIRGI-SHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSA 216 (235)
T ss_dssp EHHHHHHHHHHCCTTC-CEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CHHHHHHHHHhhhcCC-cEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3455556665544433 4789999965321 1111 12222222224566777664
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=72.55 E-value=1.5 Score=38.91 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVS 32 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~ 32 (505)
.+|+|||||++.++..... ..-..++++...
T Consensus 38 pnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp CTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 4799999999998841111 222455666543
No 417
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=72.48 E-value=2.5 Score=39.51 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
||+||||+|..++. ..++.=..+.-++....
T Consensus 28 GGvGKTTva~~LA~--~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 28 GGVGKTTTSCSLAI--QMSKVRSSVLLISTDPA 58 (329)
T ss_dssp SSSSHHHHHHHHHH--HHHTSSSCEEEEECCTT
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEECCCC
Confidence 89999999988887 44443234555665543
No 418
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=72.23 E-value=1.5 Score=39.17 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 35 ~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 35 PSGAGKGTLCKALAE 49 (252)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999995
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.05 E-value=0.81 Score=39.59 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
.|+||||+|+.++.
T Consensus 9 ~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 9 DGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 420
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=72.02 E-value=1.6 Score=38.65 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
.+|+|||+||.+++.. ...+.-..+++++...+
T Consensus 38 ~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSSC
T ss_pred CCCCCHHHHHHHHHHH-HHHhcCCCceeecccCC
Confidence 3799999999988752 12233345667776543
No 421
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.87 E-value=1.6 Score=37.39 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+++.+..
T Consensus 30 ~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQ 44 (201)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 422
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.84 E-value=1.7 Score=35.76 Aligned_cols=15 Identities=40% Similarity=0.315 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 41 ~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQ 55 (158)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 423
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.39 E-value=1.5 Score=39.14 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 30 ~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQ 44 (252)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 424
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.15 E-value=1.6 Score=37.89 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999975
No 425
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.94 E-value=1.7 Score=37.21 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.+..
T Consensus 27 PSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 27 ASGVGRSHIKNALLS 41 (197)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 479999999999986
No 426
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.90 E-value=8.4 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceE-EEEeCC-CCCHHHHHHHHHHHcC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRT-WVCVSE-PFDEFRIARAIIESLT 49 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~-wv~~~~-~~~~~~~~~~l~~~l~ 49 (505)
..|+||||+++.++. ..... .+.+ ++.... .....+.+....+.++
T Consensus 137 ~nGaGKTTll~~Lag--~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 137 FNGSGKTTTIAKLAN--WLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH--HHHhc-CCEEEEEeecccccchHHHHHHHHHHcC
Confidence 479999999999987 33332 3334 433221 1233344445555544
No 427
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=70.84 E-value=2 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHhcCcccccCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFE 24 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~ 24 (505)
+-|+||||+++.++. ...+.++
T Consensus 10 ~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 10 PEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp CTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CCCCcHHHHHHHHHH--HHHCCCC
Confidence 359999999999987 5544444
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.72 E-value=1.4 Score=37.94 Aligned_cols=15 Identities=13% Similarity=0.095 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||++|..+++
T Consensus 66 PPGtGKTt~a~ala~ 80 (212)
T 1tue_A 66 PANTGKSYFGMSFIH 80 (212)
T ss_dssp CGGGCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=70.69 E-value=1.7 Score=37.81 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 31 psGsGKSTLl~~L~g 45 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLN 45 (218)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 430
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=70.68 E-value=3.6 Score=38.85 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHhcCcccc--cCCCceEEEEeCCCCCHH
Q 046115 2 GGIGKTTLAQFAYNNGDVE--RNFEKRTWVCVSEPFDEF 38 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~--~~f~~~~wv~~~~~~~~~ 38 (505)
||+||||+|..++. ..+ ..=..++-|+.....+..
T Consensus 27 GGvGKTTvaanLA~--~lA~~~~G~rVLLvD~D~~~~l~ 63 (354)
T 2woj_A 27 GGVGKTTSSCSIAI--QMALSQPNKQFLLISTDPAHNLS 63 (354)
T ss_dssp TTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCCHH
Confidence 89999999998887 454 332345566655444443
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=70.62 E-value=1.7 Score=37.33 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 10 ~~GsGKst~~~~la~ 24 (208)
T 3ake_A 10 PSASGKSSVARRVAA 24 (208)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 432
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.42 E-value=1.8 Score=38.54 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+||||||+.++.
T Consensus 33 ~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 33 GTASGKSTVCEKIME 47 (245)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 433
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=70.06 E-value=1.9 Score=37.67 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||||++.++.
T Consensus 24 psGsGKSTLlk~L~g 38 (219)
T 1s96_A 24 PSGAGKSSLIQALLK 38 (219)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999987
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.80 E-value=1.8 Score=38.15 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 17 ~~GsGKsTla~~la~ 31 (233)
T 3r20_A 17 PAGTGKSSVSRGLAR 31 (233)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 435
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=69.28 E-value=1.6 Score=41.40 Aligned_cols=15 Identities=40% Similarity=0.337 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||++|+.+++
T Consensus 59 ppGtGKT~la~~ia~ 73 (363)
T 3hws_A 59 PTGSGKTLLAETLAR 73 (363)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 489999999999998
No 436
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=68.84 E-value=2.1 Score=36.30 Aligned_cols=15 Identities=47% Similarity=0.512 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 9 ~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 9 PPGVGKTTLIHKASE 23 (189)
T ss_dssp CCSSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHh
Confidence 479999999999886
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.82 E-value=1.9 Score=37.18 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||+|+|+.++.
T Consensus 8 pPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAK 22 (206)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999997
No 438
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=68.65 E-value=2 Score=39.80 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 98 ~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 98 SVAVGKSTTARVLQA 112 (312)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHh
Confidence 379999999999987
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=68.23 E-value=2.1 Score=39.01 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+|+.++.
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999984
No 440
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.17 E-value=1.8 Score=40.37 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||||..++.
T Consensus 48 PTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAA 62 (339)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999998
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.79 E-value=2.2 Score=35.70 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+|||||+..+..
T Consensus 14 ~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 14 WSGTGKTTLLKKLIP 28 (174)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 442
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=67.62 E-value=2.2 Score=37.10 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
||+||||+|..++.
T Consensus 11 gGvGKTt~a~nLa~ 24 (224)
T 1byi_A 11 TEVGKTVASCALLQ 24 (224)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999988887
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=67.61 E-value=5.1 Score=34.68 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHhcCccccc-CCCceEEEEeCCCCCHHHHHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVER-NFEKRTWVCVSEPFDEFRIARAIIE 46 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~l~~ 46 (505)
+.|+||||+++.++. .... .+..+++..--......+..++++.
T Consensus 11 ~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 479999999999987 4433 3433443332222223344555554
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.35 E-value=2.1 Score=39.72 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||||+.++.
T Consensus 13 ptGsGKTtla~~La~ 27 (323)
T 3crm_A 13 PTAAGKTDLAMALAD 27 (323)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999997
No 445
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=67.22 E-value=2.1 Score=39.16 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||||+.+..
T Consensus 39 ~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 39 PQGSGKSFTSIQIYN 53 (290)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999877
No 446
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.16 E-value=9.2 Score=37.72 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFD 36 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~ 36 (505)
.+|+|||||++.++. .... ..+.+++.....+.
T Consensus 301 pNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 301 VNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred CCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 379999999999987 4432 24556665444433
No 447
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=67.01 E-value=3.8 Score=39.42 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHhcCccccc------CCCceEEEEeCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVER------NFEKRTWVCVSEPF 35 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~------~f~~~~wv~~~~~~ 35 (505)
||+||||+|..++. ..+. .=..++-|++....
T Consensus 118 GGvGKTT~a~nLA~--~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 118 GGVSKTVSTVSLAH--AMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp SSSSHHHHHHHHHH--HHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCccHHHHHHHHHH--HHHhcchhhcCCCeEEEEeCCCCC
Confidence 89999999988887 4442 11245567766543
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=66.98 E-value=3.2 Score=36.96 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWV 29 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv 29 (505)
..|+|||||++.++. ..... +.+++
T Consensus 34 ~NGsGKSTLlk~l~G--l~~p~--G~i~~ 58 (249)
T 2qi9_C 34 PNGAGKSTLLARMAG--MTSGK--GSIQF 58 (249)
T ss_dssp CTTSSHHHHHHHHTT--SSCCE--EEEEE
T ss_pred CCCCcHHHHHHHHhC--CCCCC--eEEEE
Confidence 479999999999997 44333 55544
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=66.68 E-value=5 Score=35.40 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHhcCcccc-cCCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVE-RNFEKRTWV 29 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~-~~f~~~~wv 29 (505)
+.|+||||+++.++. ... ..+..+...
T Consensus 35 ~~GsGKsT~~~~l~~--~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVE--TLQQNGIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHH--HHHHTTCCCEEEE
T ss_pred CCCCCHHHHHHHHHH--HHHhcCCCeeeee
Confidence 479999999999987 443 334434443
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.61 E-value=2.3 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
.+|+|||+||.+++..
T Consensus 42 psGsGKStLA~~La~~ 57 (205)
T 2qmh_A 42 DSGVGKSETALELVQR 57 (205)
T ss_dssp CCTTTTHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999873
No 451
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.56 E-value=5.1 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPF 35 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~ 35 (505)
+|+|||++|.+++. . + ..++++.-...+
T Consensus 8 ~~SGKS~~A~~la~--~--~--~~~~yiaT~~~~ 35 (180)
T 1c9k_A 8 ARSGKSRHAEALIG--D--A--PQVLYIATSQIL 35 (180)
T ss_dssp TTSSHHHHHHHHHC--S--C--SSEEEEECCCC-
T ss_pred CCCcHHHHHHHHHh--c--C--CCeEEEecCCCC
Confidence 69999999999997 3 1 235566544433
No 452
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=66.56 E-value=2.1 Score=40.80 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDE 37 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~ 37 (505)
||+||||+|..++. .....=..++-|+. ...+.
T Consensus 11 GG~GKTt~a~~la~--~la~~g~~vllvd~-~~~~l 43 (374)
T 3igf_A 11 SGVARTKIAIAAAK--LLASQGKRVLLAGL-AEPVL 43 (374)
T ss_dssp BHHHHHHHHHHHHH--HHHHTTCCEEEEEC-SCSHH
T ss_pred CCCcHHHHHHHHHH--HHHHCCCCeEEEeC-CCCCh
Confidence 89999999988887 44444334667777 54443
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=66.56 E-value=3.6 Score=36.05 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=10.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 33 ~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCD 47 (227)
T ss_dssp CC---CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.40 E-value=2.4 Score=37.15 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 38 ~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 38 ASGSGKSTLLYILGL 52 (224)
T ss_dssp CTTSCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999987
No 455
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.26 E-value=2.6 Score=37.88 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=18.2
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWV 29 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv 29 (505)
..|+|||||++.++. .+...+.+.+++
T Consensus 33 p~GsGKSTll~~l~g--~~~~~~~G~I~~ 59 (261)
T 2eyu_A 33 PTGSGKSTTIASMID--YINQTKSYHIIT 59 (261)
T ss_dssp STTCSHHHHHHHHHH--HHHHHCCCEEEE
T ss_pred CCCccHHHHHHHHHH--hCCCCCCCEEEE
Confidence 479999999999987 443333444443
No 456
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.87 E-value=6.4 Score=39.91 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEe
Q 046115 75 FLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITT 110 (505)
Q Consensus 75 ~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTt 110 (505)
-+||+|.+..-+...+..+...++ .+.++++.-
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred CEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 489999997665555555555444 455666543
No 457
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=65.61 E-value=12 Score=36.36 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=19.7
Q ss_pred CCCCcHHHHHHHHhcCcccccC-CCceEEEEeC
Q 046115 1 MGGIGKTTLAQFAYNNGDVERN-FEKRTWVCVS 32 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~-f~~~~wv~~~ 32 (505)
.+|+||||+|..++. ..+.+ =..+.-+++.
T Consensus 108 ~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGK--FLREKHKKKVLVVSAD 138 (433)
T ss_dssp STTSSHHHHHHHHHH--HHHHTSCCCEEEEECC
T ss_pred CCCCCHHHHHHHHHH--HHHHhcCCeEEEEecC
Confidence 389999999999887 44443 2234455544
No 458
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.59 E-value=2.4 Score=39.71 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||||+.++.
T Consensus 15 ptgSGKTtla~~La~ 29 (340)
T 3d3q_A 15 PTASGKTELSIEVAK 29 (340)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHH
Confidence 479999999999987
No 459
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.38 E-value=2.6 Score=37.31 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 32 ~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 32 PTGAGKSVFLELIAG 46 (240)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 479999999999987
No 460
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=65.35 E-value=2.5 Score=37.33 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWV 29 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv 29 (505)
..|+|||||++.++. .. .-..+.+++
T Consensus 39 ~nGsGKSTLl~~l~G--l~-~p~~G~I~~ 64 (235)
T 3tif_A 39 PSGSGKSTMLNIIGC--LD-KPTEGEVYI 64 (235)
T ss_dssp STTSSHHHHHHHHTT--SS-CCSEEEEEE
T ss_pred CCCCcHHHHHHHHhc--CC-CCCceEEEE
Confidence 479999999999987 22 223455555
No 461
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=65.26 E-value=2.5 Score=36.75 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||+|.|+.++.
T Consensus 37 pPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.10 E-value=3.3 Score=33.89 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
.+|+|||||...+...
T Consensus 11 ~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 11 NPNVGKSTIFNALTGE 26 (165)
T ss_dssp STTSSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3799999999999874
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=64.68 E-value=2.6 Score=37.27 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 10 ~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTK 24 (241)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 464
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.60 E-value=2.3 Score=36.81 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=22.6
Q ss_pred cCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCchH
Q 046115 70 VAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKET 114 (505)
Q Consensus 70 l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~~ 114 (505)
+..++-+|+||..... ....+...+.....|..|| +|-+..
T Consensus 119 L~~~p~lllLDEPts~---~~~~l~~~l~~l~~g~tii-vtHd~~ 159 (208)
T 3b85_A 119 RTLNDAFVILDEAQNT---TPAQMKMFLTRLGFGSKMV-VTGDIT 159 (208)
T ss_dssp CCBCSEEEEECSGGGC---CHHHHHHHHTTBCTTCEEE-EEEC--
T ss_pred HhcCCCEEEEeCCccc---cHHHHHHHHHHhcCCCEEE-EECCHH
Confidence 3346679999998655 3333333333333466677 666543
No 465
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=64.59 E-value=4.3 Score=37.62 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVS 32 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~ 32 (505)
||+||||.|.-++. ..+..=..+.-|++.
T Consensus 57 GGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 57 GGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 89999999977765 444332345556655
No 466
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.35 E-value=3.5 Score=38.02 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC 30 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~ 30 (505)
.+|+||||+++.++. ..... .+.+++.
T Consensus 110 ~nGsGKTTll~~Lag--ll~~~-~g~V~l~ 136 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGR--YYQNL-GKKVMFC 136 (304)
T ss_dssp STTSSHHHHHHHHHH--HHHTT-TCCEEEE
T ss_pred CCCCcHHHHHHHHHH--HHHhc-CCEEEEE
Confidence 479999999999987 33332 3445444
No 467
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.34 E-value=2.4 Score=41.36 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+|||++|+.++.
T Consensus 58 ppGtGKT~lar~lA~ 72 (444)
T 1g41_A 58 PTGVGKTEIARRLAK 72 (444)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999998
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=64.28 E-value=2.5 Score=36.71 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
+|+|||||+.+++.
T Consensus 47 ~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 47 IGSGKTLLIEKLID 60 (226)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999987
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=64.08 E-value=2.7 Score=39.55 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+++.++.
T Consensus 32 ~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQ 46 (359)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 589999999999987
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=64.01 E-value=2.8 Score=35.11 Aligned_cols=14 Identities=50% Similarity=0.496 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
+|+|||||+..++.
T Consensus 11 ~gvGKStLl~~l~~ 24 (184)
T 2zej_A 11 TGSGKTTLLQQLMK 24 (184)
T ss_dssp TTSSHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhc
Confidence 79999999999987
No 471
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=63.90 E-value=2.9 Score=34.81 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|.++..
T Consensus 24 ~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 24 EANIGKSELSLALID 38 (181)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 472
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=63.70 E-value=2.8 Score=36.73 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 16 ~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 16 APGAGKGTQANFIKE 30 (230)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 589999999999987
No 473
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=63.69 E-value=2.9 Score=38.85 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
.+|+||||+|+.+..
T Consensus 100 psGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKA 114 (321)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999876
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=63.69 E-value=2.9 Score=36.29 Aligned_cols=15 Identities=47% Similarity=0.518 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 43 ~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 43 PNGIGKTTLLKTIST 57 (214)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 369999999999987
No 475
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=63.63 E-value=1.7 Score=36.95 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHcCCceEEEEEeCCCCCCccChhHHHHhhcCCCCCcEEEEEeCch
Q 046115 68 ECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKE 113 (505)
Q Consensus 68 ~~l~~~r~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~iLiTtr~~ 113 (505)
+.+.+.-=+|++|.++.-+...++.+. .+.+ .+..|++|.++.
T Consensus 76 ~~~~~~~dvViIDEaqfl~~~~v~~l~-~l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQFFDDEIVEIVN-KIAE--SGRRVICAGLDM 118 (191)
T ss_dssp HHCCTTCSEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEEECSB
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHHH-HHHh--CCCEEEEEeccc
Confidence 333333348999998664332333332 2222 267899998854
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=63.31 E-value=2.9 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhcC
Q 046115 1 MGGIGKTTLAQFAYNN 16 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~ 16 (505)
.+|+|||||.+.++..
T Consensus 37 ~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRN 52 (191)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 3799999999999874
No 477
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=63.31 E-value=12 Score=37.59 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEP 34 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~ 34 (505)
+|+|||+|+.++++ .. +-+.++++-+++.
T Consensus 241 ~g~GKT~L~~~ia~--~~--~~~v~V~~~iGER 269 (600)
T 3vr4_A 241 FGAGKTVVQHQIAK--WS--DVDLVVYVGCGER 269 (600)
T ss_dssp TTSCHHHHHHHHHH--HS--SCSEEEEEEEEEC
T ss_pred CCccHHHHHHHHHh--cc--CCCEEEEEEeccc
Confidence 69999999999987 32 2245677777765
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=63.25 E-value=2.9 Score=37.60 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 40 ~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 40 SSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999987
No 479
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.21 E-value=1.9 Score=37.79 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=8.8
Q ss_pred CCCCcHHHHHHHHh-c
Q 046115 1 MGGIGKTTLAQFAY-N 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~-~ 15 (505)
+.|+|||||++.++ .
T Consensus 35 p~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEK 50 (231)
T ss_dssp SCC----CHHHHHHC-
T ss_pred CCCCCHHHHHHHHHhc
Confidence 47999999999999 6
No 480
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.88 E-value=3.7 Score=38.20 Aligned_cols=29 Identities=24% Similarity=0.017 Sum_probs=19.3
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
.+|+||||++..++. .....=..+.+++.
T Consensus 113 ~~G~GKTT~~~~LA~--~l~~~g~kVllid~ 141 (320)
T 1zu4_A 113 VNGTGKTTSLAKMAN--YYAELGYKVLIAAA 141 (320)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHH--HHHHCCCeEEEEeC
Confidence 379999999999987 44433223445543
No 481
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=62.76 E-value=3 Score=37.81 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 42 pnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNG 56 (275)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999986
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=62.68 E-value=4.8 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.8
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVC 30 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~ 30 (505)
..|+|||||++.++. .. .-..+.++++
T Consensus 45 ~nGsGKSTLl~~l~G--l~-~p~~G~I~~~ 71 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTG--YL-SPSHGECHLL 71 (266)
T ss_dssp CTTSCHHHHHHHHTS--SS-CCSSCEEEET
T ss_pred CCCCcHHHHHHHHhc--CC-CCCCcEEEEC
Confidence 479999999999997 22 2234556553
No 483
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=62.47 E-value=3.2 Score=38.28 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=18.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCV 31 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~ 31 (505)
..|+||||+++.++. ..... .+.+.+..
T Consensus 108 ~nGsGKTTll~~Lag--~l~~~-~g~V~l~g 135 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAH--RLKNE-GTKVLMAA 135 (302)
T ss_dssp CTTSCHHHHHHHHHH--HHHHT-TCCEEEEC
T ss_pred CCCCCHHHHHHHHHH--HHHHc-CCeEEEEe
Confidence 479999999999987 33322 34454443
No 484
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.41 E-value=4.7 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046115 2 GGIGKTTLAQFAYNNGDVERNFEKRTWVCVS 32 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~ 32 (505)
||+||||+|..++. ..++.=..++-|+..
T Consensus 17 GGvGKTT~a~~lA~--~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 17 GGVGKTSISCATAI--RLAEQGKRVLLVSTD 45 (589)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CcCHHHHHHHHHHH--HHHHCCCcEEEEECC
Confidence 89999999988876 443332235556544
No 485
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=62.36 E-value=12 Score=35.48 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=17.0
Q ss_pred EEEEeCCCCCCccChhHHHHhhcC
Q 046115 76 LLVLDDVWNEDYYKWEPFYKCLKN 99 (505)
Q Consensus 76 LlvlDdv~~~~~~~~~~~~~~~~~ 99 (505)
-|+||++.+.......++...+..
T Consensus 225 tlfldei~~l~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 225 TLFLDEVGELDQRVQAKLLRVLET 248 (368)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHH
T ss_pred eEEecChhhCCHHHHHHHHHHHHh
Confidence 589999988766556666666643
No 486
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=62.31 E-value=2 Score=35.84 Aligned_cols=14 Identities=36% Similarity=0.280 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 046115 2 GGIGKTTLAQFAYN 15 (505)
Q Consensus 2 ~G~GKT~LA~~~~~ 15 (505)
+|+|||||++.+..
T Consensus 11 SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 11 SDSGKTTLITRMMP 24 (171)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=62.26 E-value=2.9 Score=41.57 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
++|+||||+|+.++.
T Consensus 403 lsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 403 SLTVSREQLSIALLS 417 (511)
T ss_dssp TCCSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 579999999999998
No 488
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=62.23 E-value=3.1 Score=36.77 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhhc---CCCCCcEEEEEeCchHHHH
Q 046115 63 MQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCLK---NSLHESKILITTRKETVAR 117 (505)
Q Consensus 63 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~~---~~~~~~~iLiTtr~~~~~~ 117 (505)
.-.+.+.+..++-+++||..... +......+...+. ....+..||++|-+.....
T Consensus 135 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 33445555556668899997443 2223344555452 2234677888888765543
No 489
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.15 E-value=3.1 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 58 ~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 58 PSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHc
Confidence 479999999999987
No 490
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.13 E-value=3.1 Score=36.84 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||.+.++.
T Consensus 40 ~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAG 54 (240)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhC
Confidence 369999999999987
No 491
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=62.08 E-value=3.2 Score=38.35 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 88 ~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 88 SVAVGKSTTARVLQA 102 (308)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 492
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=61.84 E-value=3.1 Score=37.25 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||.+.++.
T Consensus 41 ~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 41 PNGSGKSTLINVITG 55 (257)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhC
Confidence 379999999999987
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.81 E-value=3.2 Score=38.32 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+|||+||..++.
T Consensus 11 ptgsGKt~la~~La~ 25 (322)
T 3exa_A 11 PTAVGKTKTSVMLAK 25 (322)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH
Confidence 479999999999987
No 494
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=61.67 E-value=5.6 Score=34.69 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+||||+++.++.
T Consensus 29 ~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAE 43 (223)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 495
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=61.64 E-value=3.2 Score=38.21 Aligned_cols=15 Identities=33% Similarity=0.146 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
+.|+|||+||.+++.
T Consensus 18 ptgsGKt~la~~La~ 32 (316)
T 3foz_A 18 PTASGKTALAIELRK 32 (316)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHH
Confidence 479999999999987
No 496
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.52 E-value=3.3 Score=36.89 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 37 ~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 37 PNGAGKSTLGKILAG 51 (250)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 379999999999987
No 497
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=61.38 E-value=3.3 Score=36.32 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC-CccChhHHHHhh-cCCCCCcEEEEEeCchHHHHH
Q 046115 62 LMQHIEECVAGKKFLLVLDDVWNE-DYYKWEPFYKCL-KNSLHESKILITTRKETVARI 118 (505)
Q Consensus 62 ~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~~~~~~-~~~~~~~~iLiTtr~~~~~~~ 118 (505)
..-.+.+.+..++-+++||.-... +......+...+ .....+..||++|-+......
T Consensus 137 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 333455555556668888987442 222233344432 233335678888887655543
No 498
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=61.31 E-value=3.2 Score=33.53 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcC
Q 046115 2 GGIGKTTLAQFAYNN 16 (505)
Q Consensus 2 ~G~GKT~LA~~~~~~ 16 (505)
+|+|||||+..+...
T Consensus 12 ~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 12 GGVGKSALTIQLIQN 26 (166)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 799999999999764
No 499
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=61.30 E-value=3.3 Score=37.06 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 046115 1 MGGIGKTTLAQFAYN 15 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~ 15 (505)
..|+|||||++.++.
T Consensus 49 ~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 49 PNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999987
No 500
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.92 E-value=23 Score=42.84 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046115 1 MGGIGKTTLAQFAYNNGDVERNFEKRTWVCVSEPFDEFRIAR 42 (505)
Q Consensus 1 ~~G~GKT~LA~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 42 (505)
++|+|||++|+.+++ ..... ++-+++....+..++.+
T Consensus 653 paGtGKTe~vk~LA~--~lg~~---~v~~nc~e~ld~~~lg~ 689 (2695)
T 4akg_A 653 PAGTGKTETVKAFGQ--NLGRV---VVVFNCDDSFDYQVLSR 689 (2695)
T ss_dssp CTTSCHHHHHHHHHH--TTTCC---CEEEETTSSCCHHHHHH
T ss_pred CCCCCcHHHHHHHHH--HhCCc---EEEEECCCCCChhHhhH
Confidence 479999999999998 45443 23457888777766533
Done!