BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046116
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK+QGN+ F EA Y +A+ PL V Y+NRA CYL +++PE A++D
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYTNRALCYLKMQQPEQALADC 61
Query: 477 TRA 479
RA
Sbjct: 62 RRA 64
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK+QGN+ F EA Y +A+ PL V Y+NRA CYL +++PE A++D
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADC 66
Query: 477 TRA 479
RA
Sbjct: 67 RRA 69
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKAL--DLCPLKMRKERIVLYSNRAQCYLMLKKPE 470
SV L+++GN+ F G A+ Y++AL D P +++ VL+ NRA C+L L+ +
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP----QDQAVLHRNRAACHLKLEDYD 82
Query: 471 AAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
A ++ ++A +RRSQA + +G ++++D
Sbjct: 83 KAETEASKA---IEKDGGDVKALYRRSQALEKLGRLDQAVLD 121
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK +GN F A EA+K Y A++L P V YSN + CY+ E I T
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFT 82
Query: 477 TRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
T+A RR+ A + +G +++ D
Sbjct: 83 TKA---LEIKPDHSKALLRRASANESLGNFTDAMFD 115
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK +GN F A EA+K Y A++L P V YSN + CY+ E I T
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFT 78
Query: 477 TRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMD 512
T+A RR+ A + +G +++ D
Sbjct: 79 TKA---LEIKPDHSKALLRRASANESLGNFTDAMFD 111
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK Q N F A E A+K YS+A++L P + Y NR+ YL + A+ D
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 477 TRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMDALTFI-------GSRMKCKHTNRV 529
TRA +RR+ + +G + +L D T + ++MK + N++
Sbjct: 64 TRA---IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 401 LMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRA 460
L S+E+ E E LK +GN++ E AV Y KA++L P V + NRA
Sbjct: 3 LGSEEDSAEAE----RLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-----VYFCNRA 53
Query: 461 QCYLMLKKPEAAISDTTRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESL 510
Y L A+ D RA S+AY MGLA SL
Sbjct: 54 AAYSKLGNYAGAVQDCERAICIDPAY----------SKAYGRMGLALSSL 93
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK Q N F A E A+K YS+A++L P + Y NR+ YL + A++D
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALNDA 78
Query: 477 TRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMDALTFI-------GSRMKCKHTNRV 529
TRA +RR+ + +G + +L D T + ++MK + N++
Sbjct: 79 TRA---IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 135
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK Q N F A E A+K YS+A++L P + Y NR+ YL + A+ D
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 477 TRAXXXXXXXXXXXXXXWRRSQAYDMMGLAKESLMDALTFI-------GSRMKCKHTNRV 529
TRA +RR+ + +G + +L D T + ++MK + N++
Sbjct: 71 TRA---IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAI 473
M+K +GN+ F G +A+K Y++A+ P + LYSNRA CY L + + A+
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-----LYSNRAACYTKLLEFQLAL 70
Query: 474 SD 475
D
Sbjct: 71 KD 72
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY 463
V LK++GN+ G I++A++ YS+A+ L P VLYSNR+ Y
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAY 48
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476
LK +GNQ F ++A+K Y+ AL+L KE V YSN + CY+ + + + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 477 TRA 479
T+A
Sbjct: 63 TKA 65
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475
K +GN+ F G A++ Y++A+ P E +LYSNRA C L + + A+ D
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDD 69
>pdb|3U3Y|B Chain B, Mouse Trex1 D200h Mutant
pdb|3U3Y|A Chain A, Mouse Trex1 D200h Mutant
Length = 314
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 167 SPSGNGSRK 175
>pdb|3U6F|B Chain B, Mouse Trex1 D200n Mutant
pdb|3U6F|A Chain A, Mouse Trex1 D200n Mutant
Length = 314
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 167 SPSGNGSRK 175
>pdb|3MXM|B Chain B, Trex1 3' Exonuclease V201d Aicardi-Goutieres Syndrome
Mutant
pdb|3MXM|A Chain A, Trex1 3' Exonuclease V201d Aicardi-Goutieres Syndrome
Mutant
Length = 242
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER---VGEAITQTLLQ---DYHKVKYGNLKLKS 378
S NG + +G T+ Q D H + +L L S
Sbjct: 167 SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLS 206
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKAL---DLCPLK----------MRKERIVLYSNR 459
SV L+Q+GN+ F +EA+ Y AL D L+ + ++ I LY+N
Sbjct: 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69
Query: 460 AQCYLML 466
+QCYL +
Sbjct: 70 SQCYLNI 76
>pdb|3MXI|B Chain B, Trex1 3' Exonuclease D18n Familial Chilblain Lupus Mutant
pdb|3MXI|A Chain A, Trex1 3' Exonuclease D18n Familial Chilblain Lupus Mutant
Length = 242
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 167 SPSGNGSRK 175
>pdb|3MXJ|B Chain B, Crystal Structure Of The Mtrex1 Apoprotein
pdb|3MXJ|A Chain A, Crystal Structure Of The Mtrex1 Apoprotein
Length = 242
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 167 SPSGNGSRK 175
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443
S F +K++GN+ F I EA+ KY +ALD
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67
>pdb|2IOC|B Chain B, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
Specificity And Reveals A Polyproline Ii Helix For
Protein Partenring
pdb|2IOC|A Chain A, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
Specificity And Reveals A Polyproline Ii Helix For
Protein Partenring
Length = 242
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 167 SPSGNGSRK 175
>pdb|2O4G|A Chain A, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|B Chain B, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|C Chain C, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|D Chain D, Structure Of Trex1 In Complex With A Nucleotide
pdb|3B6O|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6P|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
Length = 247
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 109 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 168
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 169 SPSGNGSRK 177
>pdb|2OA8|A Chain A, Crystal Structure Of Mtrex1 With Ssdna
pdb|2OA8|B Chain B, Crystal Structure Of Mtrex1 With Ssdna
Length = 233
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 104 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 163
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 164 SPSGNGSRK 172
>pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna
pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna
Length = 247
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 288 LIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDP---DTRYEVIDIAALFLVDLVE 344
L+RAFL+ + C V+ + D + + + + L L P D + V IAAL ++
Sbjct: 109 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 168
Query: 345 LKSLNGRER 353
S NG +
Sbjct: 169 SPSGNGSRK 177
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 237 SQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGI-GLIRAFLKN 295
SQ C LY +C + S L ++ WGG H P+G G + K
Sbjct: 410 SQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKA 469
Query: 296 VIESVCNV 303
+IE NV
Sbjct: 470 LIEKFYNV 477
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 237 SQLQCWSLYLLNCFACRERSSFDLICSQDFLKIVCGMWGGLANHTSPAGI-GLIRAFLKN 295
SQ C LY +C + S L ++ WGG H P+G G + K
Sbjct: 425 SQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKA 484
Query: 296 VIESVCNV 303
+IE NV
Sbjct: 485 LIEKFYNV 492
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,137,157
Number of Sequences: 62578
Number of extensions: 619610
Number of successful extensions: 1359
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 33
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)