Query 046116
Match_columns 604
No_of_seqs 435 out of 2352
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 9.8E-19 2.1E-23 179.8 13.4 124 409-545 76-199 (304)
2 KOG0624 dsRNA-activated protei 99.8 1.7E-18 3.7E-23 180.2 14.1 179 322-522 75-255 (504)
3 KOG4234 TPR repeat-containing 99.8 5.3E-18 1.2E-22 166.2 13.2 122 397-521 78-199 (271)
4 KOG0547 Translocase of outer m 99.7 3.2E-16 7E-21 168.9 12.9 125 409-545 110-234 (606)
5 KOG0548 Molecular co-chaperone 99.7 2.4E-15 5.2E-20 163.8 19.1 248 298-560 228-491 (539)
6 KOG0543 FKBP-type peptidyl-pro 99.7 6.8E-16 1.5E-20 164.2 13.5 145 409-561 203-357 (397)
7 KOG0550 Molecular chaperone (D 99.6 3.9E-15 8.4E-20 158.3 12.1 106 410-519 245-350 (486)
8 KOG4648 Uncharacterized conser 99.6 6.7E-15 1.4E-19 153.6 9.4 108 407-522 90-197 (536)
9 KOG0548 Molecular co-chaperone 99.5 1.2E-13 2.7E-18 150.7 12.6 113 414-539 2-114 (539)
10 KOG0551 Hsp90 co-chaperone CNS 99.5 2.1E-13 4.7E-18 142.0 13.5 103 413-520 80-183 (390)
11 PLN03088 SGT1, suppressor of 99.5 1.1E-12 2.4E-17 140.2 15.8 116 414-542 2-117 (356)
12 KOG0545 Aryl-hydrocarbon recep 99.4 7.9E-13 1.7E-17 133.3 13.2 115 401-521 168-295 (329)
13 TIGR00990 3a0801s09 mitochondr 99.4 1E-11 2.2E-16 140.8 16.4 102 409-519 122-223 (615)
14 PRK15359 type III secretion sy 99.4 1.9E-11 4.1E-16 114.5 15.3 98 417-522 27-124 (144)
15 KOG4642 Chaperone-dependent E3 99.4 2.4E-12 5.2E-17 129.4 9.6 130 413-554 9-138 (284)
16 PRK15363 pathogenicity island 99.3 6.3E-11 1.4E-15 113.3 14.7 118 413-540 34-151 (157)
17 TIGR02552 LcrH_SycD type III s 99.3 1E-10 2.2E-15 105.6 14.9 104 410-521 13-116 (135)
18 KOG0376 Serine-threonine phosp 99.2 9.3E-12 2E-16 135.1 6.0 102 413-522 3-104 (476)
19 KOG4626 O-linked N-acetylgluco 99.2 3.5E-10 7.5E-15 125.4 18.1 115 401-523 375-489 (966)
20 PRK10370 formate-dependent nit 99.2 3.5E-10 7.5E-15 111.7 16.4 106 408-521 67-175 (198)
21 PRK11189 lipoprotein NlpI; Pro 99.2 2E-10 4.3E-15 119.5 14.6 103 412-522 62-164 (296)
22 KOG0624 dsRNA-activated protei 99.2 1.4E-10 3.1E-15 121.6 11.5 228 323-585 193-420 (504)
23 PF13414 TPR_11: TPR repeat; P 99.1 2.4E-10 5.2E-15 92.4 8.4 67 413-484 2-69 (69)
24 cd00189 TPR Tetratricopeptide 99.1 2.1E-09 4.6E-14 85.4 11.5 98 416-521 2-99 (100)
25 TIGR00990 3a0801s09 mitochondr 99.1 2.4E-09 5.2E-14 121.5 16.2 102 413-522 398-499 (615)
26 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.6E-09 1.2E-13 90.9 13.8 107 414-522 2-108 (119)
27 KOG4555 TPR repeat-containing 99.0 3.8E-09 8.3E-14 98.5 12.0 105 410-519 39-144 (175)
28 PF13414 TPR_11: TPR repeat; P 99.0 1.5E-09 3.3E-14 87.7 7.5 67 452-521 2-69 (69)
29 KOG4626 O-linked N-acetylgluco 99.0 3.3E-09 7.2E-14 117.8 12.0 113 402-522 342-454 (966)
30 KOG1308 Hsp70-interacting prot 99.0 3.5E-10 7.5E-15 118.8 4.1 106 408-521 108-213 (377)
31 KOG1126 DNA-binding cell divis 98.9 7.8E-09 1.7E-13 115.8 13.4 129 403-544 410-538 (638)
32 PRK09782 bacteriophage N4 rece 98.9 1.3E-07 2.9E-12 113.1 23.8 102 414-523 609-710 (987)
33 PRK02603 photosystem I assembl 98.9 1.9E-08 4.1E-13 96.2 13.4 93 409-506 30-122 (172)
34 PF12895 Apc3: Anaphase-promot 98.9 5E-09 1.1E-13 88.6 7.6 84 426-516 1-84 (84)
35 TIGR02521 type_IV_pilW type IV 98.9 3.5E-08 7.7E-13 93.3 14.1 108 406-521 57-166 (234)
36 CHL00033 ycf3 photosystem I as 98.9 3.7E-08 8.1E-13 93.5 14.1 103 412-519 33-142 (168)
37 PRK15359 type III secretion sy 98.8 2.5E-08 5.3E-13 93.5 11.2 88 409-504 53-140 (144)
38 PRK12370 invasion protein regu 98.8 4.5E-08 9.8E-13 110.3 14.1 102 410-519 334-435 (553)
39 TIGR02521 type_IV_pilW type IV 98.8 2.3E-07 5E-12 87.7 16.5 103 411-519 96-198 (234)
40 PRK12370 invasion protein regu 98.8 7.4E-08 1.6E-12 108.6 15.4 103 407-517 365-468 (553)
41 PRK15174 Vi polysaccharide exp 98.8 1.2E-07 2.6E-12 109.1 16.5 106 411-524 281-386 (656)
42 PRK15331 chaperone protein Sic 98.8 8.7E-08 1.9E-12 92.4 12.6 120 412-545 35-154 (165)
43 KOG1125 TPR repeat-containing 98.7 3.3E-08 7.1E-13 109.5 10.1 105 414-526 430-534 (579)
44 PRK15179 Vi polysaccharide bio 98.7 3.4E-07 7.4E-12 106.1 18.1 105 407-519 113-217 (694)
45 TIGR03302 OM_YfiO outer membra 98.7 1.9E-07 4.1E-12 92.4 13.9 108 413-522 32-147 (235)
46 PLN02789 farnesyltranstransfer 98.7 3.2E-07 7E-12 97.3 16.4 117 398-522 55-174 (320)
47 PRK15174 Vi polysaccharide exp 98.7 9.7E-07 2.1E-11 101.8 21.3 98 414-519 246-347 (656)
48 KOG0547 Translocase of outer m 98.7 5E-08 1.1E-12 106.5 10.0 104 411-522 323-426 (606)
49 TIGR02917 PEP_TPR_lipo putativ 98.7 8.3E-07 1.8E-11 100.6 19.6 100 413-520 124-223 (899)
50 PRK15179 Vi polysaccharide bio 98.7 5E-07 1.1E-11 104.7 18.1 100 412-519 84-183 (694)
51 PF13432 TPR_16: Tetratricopep 98.6 1.1E-07 2.4E-12 76.2 7.8 62 419-485 2-63 (65)
52 KOG1155 Anaphase-promoting com 98.6 3.6E-07 7.8E-12 99.4 13.8 136 375-519 326-461 (559)
53 KOG0550 Molecular chaperone (D 98.6 2.7E-07 5.9E-12 99.2 12.6 114 408-521 197-318 (486)
54 PLN02789 farnesyltranstransfer 98.6 1.4E-06 3.1E-11 92.4 18.0 121 407-540 99-228 (320)
55 PRK11189 lipoprotein NlpI; Pro 98.6 5E-07 1.1E-11 94.1 14.2 101 410-519 94-194 (296)
56 COG3063 PilF Tfp pilus assembl 98.6 9.5E-07 2.1E-11 89.2 15.1 98 414-519 35-132 (250)
57 PRK10803 tol-pal system protei 98.6 1.1E-06 2.5E-11 90.8 15.4 106 415-522 143-249 (263)
58 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.7E-11 91.2 15.2 126 407-545 149-277 (287)
59 COG3063 PilF Tfp pilus assembl 98.6 3.4E-06 7.4E-11 85.3 17.7 109 407-521 62-170 (250)
60 PRK11788 tetratricopeptide rep 98.6 5.4E-06 1.2E-10 87.5 20.2 100 414-521 180-280 (389)
61 TIGR02917 PEP_TPR_lipo putativ 98.6 2E-06 4.4E-11 97.5 17.9 114 412-539 768-881 (899)
62 PF13371 TPR_9: Tetratricopept 98.5 4.2E-07 9.1E-12 74.1 8.7 70 421-498 2-71 (73)
63 PRK11447 cellulose synthase su 98.5 6.9E-06 1.5E-10 100.3 22.7 110 409-521 298-416 (1157)
64 PF13432 TPR_16: Tetratricopep 98.5 2.8E-07 6.1E-12 73.8 7.2 63 457-522 1-63 (65)
65 COG5010 TadD Flp pilus assembl 98.5 1.3E-06 2.8E-11 89.5 13.4 121 412-545 98-218 (257)
66 PRK11447 cellulose synthase su 98.5 1.7E-06 3.8E-11 105.5 17.0 108 411-521 382-526 (1157)
67 KOG1126 DNA-binding cell divis 98.5 6.6E-07 1.4E-11 100.6 11.8 119 410-541 485-603 (638)
68 PRK11788 tetratricopeptide rep 98.5 4.2E-06 9E-11 88.3 17.1 101 413-521 213-313 (389)
69 PRK09782 bacteriophage N4 rece 98.5 1.6E-06 3.4E-11 104.2 15.3 108 419-540 581-688 (987)
70 PRK10370 formate-dependent nit 98.5 1.9E-06 4.2E-11 85.2 13.0 99 427-538 52-153 (198)
71 KOG1155 Anaphase-promoting com 98.5 1.1E-06 2.4E-11 95.7 12.0 97 419-523 335-431 (559)
72 TIGR02552 LcrH_SycD type III s 98.5 1.3E-06 2.8E-11 78.9 10.6 91 435-538 4-94 (135)
73 TIGR03302 OM_YfiO outer membra 98.5 5.4E-06 1.2E-10 82.1 16.0 105 415-519 108-232 (235)
74 PF14559 TPR_19: Tetratricopep 98.5 5.5E-07 1.2E-11 72.4 7.1 67 424-498 1-67 (68)
75 PF13525 YfiO: Outer membrane 98.4 2.7E-06 5.8E-11 84.1 13.3 110 413-524 4-124 (203)
76 PRK10049 pgaA outer membrane p 98.4 4.6E-06 9.9E-11 97.8 16.8 101 413-521 358-458 (765)
77 PRK10866 outer membrane biogen 98.4 6E-06 1.3E-10 84.3 15.5 110 413-524 31-158 (243)
78 PF13512 TPR_18: Tetratricopep 98.4 4.6E-06 1E-10 78.9 13.4 110 413-524 9-133 (142)
79 PF09976 TPR_21: Tetratricopep 98.4 2.7E-06 5.9E-11 79.2 11.8 99 413-517 47-145 (145)
80 PF13429 TPR_15: Tetratricopep 98.4 1.2E-06 2.6E-11 89.6 9.1 118 412-542 144-261 (280)
81 PLN03088 SGT1, suppressor of 98.4 2.9E-06 6.4E-11 91.0 12.4 85 412-504 34-118 (356)
82 PRK10049 pgaA outer membrane p 98.4 5.7E-06 1.2E-10 97.0 15.6 101 413-522 48-148 (765)
83 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.2E-06 4.7E-11 94.0 9.5 74 407-485 68-144 (453)
84 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.7E-06 5.9E-11 93.2 9.6 69 443-519 70-141 (453)
85 KOG1173 Anaphase-promoting com 98.3 3.4E-06 7.3E-11 93.7 10.2 126 407-540 407-534 (611)
86 KOG1310 WD40 repeat protein [G 98.3 2.1E-06 4.6E-11 94.6 8.0 105 409-521 369-476 (758)
87 PF13371 TPR_9: Tetratricopept 98.2 4E-06 8.7E-11 68.3 7.3 59 460-521 2-60 (73)
88 KOG0546 HSP90 co-chaperone CPR 98.2 1.6E-06 3.4E-11 92.1 5.3 124 410-541 218-355 (372)
89 PF12688 TPR_5: Tetratrico pep 98.2 2.9E-05 6.3E-10 71.5 13.0 103 415-519 2-104 (120)
90 KOG2076 RNA polymerase III tra 98.2 1.1E-05 2.4E-10 93.4 12.4 102 411-519 411-512 (895)
91 PF13424 TPR_12: Tetratricopep 98.2 3.1E-06 6.8E-11 70.0 5.9 69 452-520 4-76 (78)
92 cd05804 StaR_like StaR_like; a 98.2 1.7E-05 3.7E-10 82.8 12.3 102 413-519 113-215 (355)
93 KOG0553 TPR repeat-containing 98.2 1.5E-05 3.4E-10 83.1 11.5 106 406-519 107-215 (304)
94 COG1729 Uncharacterized protei 98.1 3.2E-05 7E-10 79.9 13.4 109 414-524 141-249 (262)
95 KOG4162 Predicted calmodulin-b 98.1 2.2E-05 4.8E-10 89.8 13.1 101 411-519 681-783 (799)
96 KOG2076 RNA polymerase III tra 98.1 4.5E-05 9.7E-10 88.6 15.4 100 414-521 139-272 (895)
97 PF13424 TPR_12: Tetratricopep 98.1 1.6E-05 3.5E-10 65.8 8.7 72 411-483 2-76 (78)
98 KOG1840 Kinesin light chain [C 98.1 8.9E-05 1.9E-09 83.3 16.6 108 413-520 282-397 (508)
99 COG4783 Putative Zn-dependent 98.1 7.1E-05 1.5E-09 82.4 15.1 102 410-519 336-437 (484)
100 PF13429 TPR_15: Tetratricopep 98.1 8.9E-06 1.9E-10 83.1 7.8 106 406-519 172-277 (280)
101 KOG0543 FKBP-type peptidyl-pro 98.1 8.8E-05 1.9E-09 80.2 15.2 100 414-521 257-357 (397)
102 COG2956 Predicted N-acetylgluc 98.0 0.00037 8.1E-09 73.8 19.2 103 414-519 141-243 (389)
103 COG4783 Putative Zn-dependent 98.0 0.00016 3.4E-09 79.8 17.0 122 412-546 304-425 (484)
104 PRK15363 pathogenicity island 98.0 5.8E-05 1.2E-09 72.7 11.6 86 410-501 65-150 (157)
105 cd05804 StaR_like StaR_like; a 98.0 0.00022 4.8E-09 74.4 16.8 67 452-521 113-179 (355)
106 KOG1128 Uncharacterized conser 98.0 3.4E-05 7.4E-10 88.0 11.1 100 413-520 484-583 (777)
107 COG4785 NlpI Lipoprotein NlpI, 98.0 3.1E-05 6.7E-10 78.1 9.6 103 412-522 63-165 (297)
108 KOG2002 TPR-containing nuclear 98.0 5.7E-05 1.2E-09 88.3 12.9 101 414-519 270-371 (1018)
109 PF14559 TPR_19: Tetratricopep 98.0 1.4E-05 3E-10 64.2 5.7 56 463-521 1-56 (68)
110 COG2956 Predicted N-acetylgluc 98.0 0.001 2.2E-08 70.6 20.4 120 410-543 176-296 (389)
111 KOG1125 TPR repeat-containing 97.9 5.5E-05 1.2E-09 84.5 11.6 117 404-523 309-497 (579)
112 cd00189 TPR Tetratricopeptide 97.9 0.00011 2.3E-09 58.1 10.0 64 455-521 2-65 (100)
113 KOG2003 TPR repeat-containing 97.9 4.4E-05 9.4E-10 83.3 9.0 119 413-544 489-607 (840)
114 KOG1840 Kinesin light chain [C 97.9 0.0015 3.2E-08 73.7 21.4 128 410-538 321-456 (508)
115 PRK14574 hmsH outer membrane p 97.9 0.00013 2.9E-09 86.4 13.6 93 419-519 73-165 (822)
116 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00014 3E-09 79.5 11.5 94 416-517 202-295 (395)
117 PRK02603 photosystem I assembl 97.8 0.00019 4.1E-09 68.6 11.2 81 441-521 23-103 (172)
118 CHL00033 ycf3 photosystem I as 97.8 0.00013 2.8E-09 69.3 9.8 97 421-520 6-102 (168)
119 PF09976 TPR_21: Tetratricopep 97.7 0.00059 1.3E-08 63.5 13.3 101 413-515 10-110 (145)
120 KOG2003 TPR repeat-containing 97.7 3.1E-05 6.7E-10 84.4 5.0 99 417-519 240-338 (840)
121 PF03704 BTAD: Bacterial trans 97.7 0.00098 2.1E-08 61.7 14.0 107 413-522 5-128 (146)
122 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00026 5.7E-09 61.4 9.7 74 414-492 39-112 (119)
123 PRK14574 hmsH outer membrane p 97.7 0.00043 9.3E-09 82.1 14.3 100 414-522 102-201 (822)
124 KOG4151 Myosin assembly protei 97.7 0.00019 4.2E-09 82.7 11.0 124 405-537 44-169 (748)
125 COG5010 TadD Flp pilus assembl 97.7 0.00027 5.8E-09 72.7 10.8 98 418-523 70-167 (257)
126 PF06552 TOM20_plant: Plant sp 97.7 0.00017 3.8E-09 70.8 8.9 84 430-521 7-111 (186)
127 KOG4234 TPR repeat-containing 97.6 0.00028 6.1E-09 70.6 9.7 68 413-485 133-200 (271)
128 PRK11906 transcriptional regul 97.6 0.00073 1.6E-08 74.7 13.7 87 427-521 317-403 (458)
129 PRK10153 DNA-binding transcrip 97.6 0.0007 1.5E-08 76.6 13.9 84 430-522 400-485 (517)
130 PRK14720 transcript cleavage f 97.6 0.00058 1.3E-08 81.2 13.6 151 366-523 18-182 (906)
131 PRK10747 putative protoheme IX 97.6 0.0034 7.3E-08 68.3 18.5 103 413-519 262-390 (398)
132 KOG2002 TPR-containing nuclear 97.6 0.0014 3.1E-08 77.0 16.1 102 412-520 305-410 (1018)
133 PF12968 DUF3856: Domain of Un 97.6 0.0011 2.5E-08 61.3 11.9 104 416-519 11-129 (144)
134 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 60.9 6.2 61 413-479 24-84 (84)
135 KOG1128 Uncharacterized conser 97.5 0.00076 1.6E-08 77.4 12.8 105 412-524 517-621 (777)
136 TIGR00540 hemY_coli hemY prote 97.5 0.0022 4.8E-08 69.8 16.1 100 412-519 116-216 (409)
137 PF00515 TPR_1: Tetratricopept 97.5 0.00015 3.2E-09 51.0 4.2 33 453-485 1-33 (34)
138 PF12569 NARP1: NMDA receptor- 97.5 0.0035 7.6E-08 70.9 17.1 64 455-521 196-259 (517)
139 KOG1173 Anaphase-promoting com 97.5 0.0038 8.3E-08 70.1 16.7 73 412-492 453-525 (611)
140 TIGR00540 hemY_coli hemY prote 97.4 0.0013 2.9E-08 71.5 12.6 94 420-521 159-256 (409)
141 PF10300 DUF3808: Protein of u 97.4 0.009 1.9E-07 66.8 19.3 128 412-545 265-401 (468)
142 PF14938 SNAP: Soluble NSF att 97.4 0.0043 9.3E-08 64.4 15.6 151 412-565 112-269 (282)
143 KOG3060 Uncharacterized conser 97.4 0.0027 5.9E-08 65.5 13.6 103 411-521 117-222 (289)
144 PRK14720 transcript cleavage f 97.4 0.0013 2.8E-08 78.3 12.7 117 412-540 29-161 (906)
145 KOG1127 TPR repeat-containing 97.3 0.0033 7.2E-08 74.3 14.8 100 414-521 562-661 (1238)
146 KOG0545 Aryl-hydrocarbon recep 97.3 0.0023 5E-08 65.9 12.0 107 370-485 190-296 (329)
147 KOG1174 Anaphase-promoting com 97.3 0.0049 1.1E-07 67.3 14.3 107 406-520 326-468 (564)
148 PRK10747 putative protoheme IX 97.3 0.0083 1.8E-07 65.3 16.4 98 414-519 118-216 (398)
149 PF15015 NYD-SP12_N: Spermatog 97.2 0.0033 7.1E-08 68.7 12.6 104 413-519 175-291 (569)
150 KOG4648 Uncharacterized conser 97.2 5.6E-05 1.2E-09 80.3 -0.7 202 310-524 112-335 (536)
151 PF13431 TPR_17: Tetratricopep 97.2 0.00035 7.6E-09 50.3 3.6 32 476-510 2-33 (34)
152 KOG1129 TPR repeat-containing 97.2 0.011 2.3E-07 63.2 15.7 97 418-523 227-323 (478)
153 KOG3060 Uncharacterized conser 97.2 0.0055 1.2E-07 63.3 13.2 101 413-521 85-185 (289)
154 KOG1129 TPR repeat-containing 97.2 0.00074 1.6E-08 71.7 7.1 104 413-521 323-426 (478)
155 COG4105 ComL DNA uptake lipopr 97.2 0.011 2.3E-07 61.2 15.3 110 413-524 33-150 (254)
156 PF13428 TPR_14: Tetratricopep 97.2 0.00064 1.4E-08 51.1 4.9 42 454-498 2-43 (44)
157 PRK11906 transcriptional regul 97.2 0.0027 5.9E-08 70.3 11.3 100 416-523 257-371 (458)
158 KOG1156 N-terminal acetyltrans 97.2 0.0071 1.5E-07 68.9 14.8 99 414-520 75-173 (700)
159 KOG1130 Predicted G-alpha GTPa 97.2 0.001 2.2E-08 72.4 7.8 75 408-482 189-264 (639)
160 PF13431 TPR_17: Tetratricopep 97.2 0.00036 7.7E-09 50.2 3.0 34 436-474 1-34 (34)
161 PRK10153 DNA-binding transcrip 97.1 0.0044 9.6E-08 70.2 12.7 100 413-520 338-450 (517)
162 PF07719 TPR_2: Tetratricopept 97.1 0.00097 2.1E-08 46.4 4.8 32 454-485 2-33 (34)
163 PF13525 YfiO: Outer membrane 97.1 0.022 4.7E-07 56.4 15.8 108 413-522 41-173 (203)
164 PF14938 SNAP: Soluble NSF att 97.1 0.0026 5.7E-08 65.9 9.5 109 412-521 73-186 (282)
165 PRK10866 outer membrane biogen 97.1 0.019 4.1E-07 58.8 15.6 122 413-541 68-221 (243)
166 PF12688 TPR_5: Tetratrico pep 97.1 0.0019 4.1E-08 59.6 7.5 69 454-522 2-70 (120)
167 KOG1174 Anaphase-promoting com 97.0 0.017 3.7E-07 63.3 15.2 105 412-524 298-402 (564)
168 PRK10803 tol-pal system protei 97.0 0.0043 9.4E-08 64.4 10.3 70 414-485 180-249 (263)
169 COG4700 Uncharacterized protei 96.9 0.024 5.2E-07 56.6 13.8 104 413-522 88-192 (251)
170 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.023 4.9E-07 62.5 14.5 64 413-481 233-296 (395)
171 PF00515 TPR_1: Tetratricopept 96.8 0.0029 6.2E-08 44.4 5.1 33 414-446 1-33 (34)
172 PF12569 NARP1: NMDA receptor- 96.7 0.015 3.3E-07 65.9 12.5 96 416-519 196-291 (517)
173 COG0457 NrfG FOG: TPR repeat [ 96.7 0.03 6.5E-07 49.7 12.0 92 423-519 139-231 (291)
174 PRK15331 chaperone protein Sic 96.7 0.0063 1.4E-07 59.2 7.9 80 413-502 70-149 (165)
175 PF07719 TPR_2: Tetratricopept 96.7 0.0043 9.4E-08 43.0 5.1 33 414-446 1-33 (34)
176 PF04733 Coatomer_E: Coatomer 96.7 0.0094 2E-07 62.7 9.8 84 428-519 181-264 (290)
177 KOG0495 HAT repeat protein [RN 96.6 0.1 2.2E-06 60.1 18.2 166 404-583 675-840 (913)
178 KOG1130 Predicted G-alpha GTPa 96.6 0.0073 1.6E-07 66.0 9.0 108 413-520 234-345 (639)
179 KOG1156 N-terminal acetyltrans 96.6 0.012 2.6E-07 67.2 10.9 106 409-522 36-141 (700)
180 KOG4555 TPR repeat-containing 96.6 0.0082 1.8E-07 56.8 7.7 58 459-519 49-106 (175)
181 PF06552 TOM20_plant: Plant sp 96.5 0.017 3.7E-07 57.1 9.8 68 413-485 24-112 (186)
182 KOG1127 TPR repeat-containing 96.5 0.036 7.9E-07 65.9 13.9 199 296-521 494-702 (1238)
183 PF13428 TPR_14: Tetratricopep 96.4 0.0082 1.8E-07 45.0 5.2 42 415-461 2-43 (44)
184 COG4235 Cytochrome c biogenesi 96.3 0.045 9.7E-07 57.6 12.2 98 429-539 137-237 (287)
185 PRK10941 hypothetical protein; 96.3 0.028 6.1E-07 58.7 10.8 72 448-522 176-247 (269)
186 PF13181 TPR_8: Tetratricopept 96.3 0.0065 1.4E-07 42.4 3.9 32 454-485 2-33 (34)
187 KOG2376 Signal recognition par 96.2 0.088 1.9E-06 59.9 14.7 101 409-521 41-141 (652)
188 KOG0495 HAT repeat protein [RN 96.2 0.075 1.6E-06 61.1 14.1 99 417-524 621-719 (913)
189 COG0457 NrfG FOG: TPR repeat [ 96.2 0.11 2.3E-06 46.2 12.5 109 409-522 90-199 (291)
190 COG4785 NlpI Lipoprotein NlpI, 96.2 0.018 3.8E-07 58.7 7.9 109 406-519 91-266 (297)
191 KOG4162 Predicted calmodulin-b 96.2 0.048 1E-06 63.4 12.4 115 417-544 653-769 (799)
192 COG3118 Thioredoxin domain-con 96.1 0.14 3E-06 54.2 14.3 115 414-539 134-282 (304)
193 KOG2376 Signal recognition par 96.0 0.099 2.1E-06 59.5 13.5 97 418-522 83-207 (652)
194 PF13512 TPR_18: Tetratricopep 95.9 0.072 1.6E-06 50.8 10.1 71 452-522 9-79 (142)
195 PLN03077 Protein ECB2; Provisi 95.6 0.82 1.8E-05 54.6 20.2 96 414-519 625-720 (857)
196 KOG4340 Uncharacterized conser 95.6 0.03 6.5E-07 59.3 7.0 97 412-513 142-264 (459)
197 PRK04841 transcriptional regul 95.6 0.12 2.6E-06 61.3 13.0 108 414-521 452-562 (903)
198 PRK04841 transcriptional regul 95.6 0.29 6.4E-06 58.1 16.2 106 414-519 531-641 (903)
199 COG3071 HemY Uncharacterized e 95.5 0.28 6E-06 53.6 14.3 97 419-519 268-390 (400)
200 PF04733 Coatomer_E: Coatomer 95.5 0.15 3.2E-06 53.7 11.9 97 415-521 132-232 (290)
201 COG1729 Uncharacterized protei 95.4 0.087 1.9E-06 54.9 9.6 67 456-522 144-210 (262)
202 PF13181 TPR_8: Tetratricopept 95.4 0.032 7E-07 38.8 4.5 31 491-521 2-32 (34)
203 smart00028 TPR Tetratricopepti 95.3 0.024 5.2E-07 36.3 3.4 31 455-485 3-33 (34)
204 KOG0551 Hsp90 co-chaperone CNS 95.3 0.23 5E-06 53.4 12.3 72 451-522 79-151 (390)
205 KOG3785 Uncharacterized conser 95.2 0.055 1.2E-06 58.4 7.6 86 424-516 32-117 (557)
206 KOG4814 Uncharacterized conser 95.2 0.98 2.1E-05 52.2 17.5 103 415-520 355-458 (872)
207 COG4700 Uncharacterized protei 95.1 1.4 3E-05 44.4 16.4 100 413-519 123-222 (251)
208 KOG0376 Serine-threonine phosp 95.0 0.019 4.2E-07 63.7 3.6 84 410-501 34-117 (476)
209 KOG1308 Hsp70-interacting prot 94.9 0.013 2.9E-07 62.7 1.9 76 464-544 125-200 (377)
210 PF13174 TPR_6: Tetratricopept 94.9 0.039 8.5E-07 37.8 3.7 30 492-521 2-31 (33)
211 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.11 2.4E-06 41.4 6.5 40 454-496 2-41 (53)
212 PF03704 BTAD: Bacterial trans 94.8 0.25 5.3E-06 45.6 9.9 63 413-480 61-123 (146)
213 PLN03081 pentatricopeptide (PP 94.8 0.26 5.6E-06 57.4 12.2 95 415-519 463-557 (697)
214 PLN03218 maturation of RBCL 1; 94.7 3.5 7.6E-05 51.0 22.2 95 415-519 685-783 (1060)
215 PF10602 RPN7: 26S proteasome 94.7 0.68 1.5E-05 45.4 13.3 106 412-519 34-142 (177)
216 KOG4507 Uncharacterized conser 94.7 0.13 2.7E-06 58.7 9.0 110 421-542 614-723 (886)
217 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.17 3.7E-06 43.7 7.8 69 413-483 5-73 (80)
218 COG2976 Uncharacterized protei 94.7 0.26 5.6E-06 49.5 10.2 99 414-520 89-189 (207)
219 KOG1941 Acetylcholine receptor 94.6 0.12 2.6E-06 56.1 8.2 107 415-521 123-237 (518)
220 KOG3824 Huntingtin interacting 94.6 0.12 2.5E-06 55.1 7.9 82 412-501 114-195 (472)
221 KOG4642 Chaperone-dependent E3 94.6 0.034 7.3E-07 57.3 3.8 62 459-523 16-77 (284)
222 KOG2796 Uncharacterized conser 94.6 0.17 3.6E-06 53.1 8.8 69 413-486 251-319 (366)
223 KOG1941 Acetylcholine receptor 94.4 0.17 3.7E-06 55.0 8.8 75 451-525 81-157 (518)
224 PRK10941 hypothetical protein; 94.3 0.45 9.7E-06 49.9 11.5 78 414-499 181-258 (269)
225 KOG2796 Uncharacterized conser 94.2 0.2 4.4E-06 52.5 8.7 107 414-523 212-319 (366)
226 COG4105 ComL DNA uptake lipopr 94.2 0.26 5.6E-06 51.2 9.3 73 452-524 33-105 (254)
227 PF13176 TPR_7: Tetratricopept 94.1 0.096 2.1E-06 37.7 4.4 26 417-442 2-27 (36)
228 PF00514 Arm: Armadillo/beta-c 94.1 0.076 1.6E-06 39.2 3.9 39 129-168 3-41 (41)
229 PF13176 TPR_7: Tetratricopept 93.9 0.1 2.3E-06 37.5 4.3 28 492-519 1-28 (36)
230 PF04781 DUF627: Protein of un 93.9 0.32 7E-06 44.6 8.3 95 420-519 2-107 (111)
231 cd00020 ARM Armadillo/beta-cat 93.7 0.25 5.5E-06 42.7 7.2 99 80-191 2-100 (120)
232 KOG4340 Uncharacterized conser 93.4 0.3 6.5E-06 52.0 8.2 84 424-515 20-103 (459)
233 KOG3785 Uncharacterized conser 93.3 0.7 1.5E-05 50.3 10.9 84 413-504 150-233 (557)
234 PF13174 TPR_6: Tetratricopept 93.2 0.14 3E-06 35.0 3.7 31 455-485 2-32 (33)
235 COG4976 Predicted methyltransf 93.1 0.12 2.6E-06 53.1 4.7 59 422-485 3-61 (287)
236 smart00028 TPR Tetratricopepti 93.1 0.14 3.1E-06 32.5 3.6 32 415-446 2-33 (34)
237 PLN03218 maturation of RBCL 1; 93.0 1.2 2.6E-05 55.0 13.9 98 414-519 579-678 (1060)
238 KOG3081 Vesicle coat complex C 92.8 4.7 0.0001 42.6 15.7 85 427-519 186-270 (299)
239 PLN03081 pentatricopeptide (PP 92.8 0.72 1.6E-05 53.7 11.2 94 416-519 327-420 (697)
240 PF09986 DUF2225: Uncharacteri 92.6 1.4 3E-05 44.7 11.4 96 424-519 87-194 (214)
241 PF14561 TPR_20: Tetratricopep 92.5 1 2.2E-05 39.5 9.2 76 434-515 8-83 (90)
242 PF12862 Apc5: Anaphase-promot 92.4 0.49 1.1E-05 41.3 7.1 59 424-482 8-70 (94)
243 COG3071 HemY Uncharacterized e 91.8 4.5 9.7E-05 44.5 14.8 100 413-519 117-216 (400)
244 KOG2610 Uncharacterized conser 91.6 1.2 2.6E-05 48.2 10.1 97 411-512 134-231 (491)
245 PF14561 TPR_20: Tetratricopep 91.5 1.4 2.9E-05 38.7 8.7 49 471-522 6-54 (90)
246 PF12862 Apc5: Anaphase-promot 91.5 0.81 1.8E-05 39.9 7.3 64 461-524 6-75 (94)
247 PF10300 DUF3808: Protein of u 91.4 0.89 1.9E-05 51.1 9.5 89 426-519 245-334 (468)
248 PLN03077 Protein ECB2; Provisi 91.3 1.6 3.4E-05 52.2 11.9 97 413-516 553-651 (857)
249 KOG2471 TPR repeat-containing 91.1 1.3 2.8E-05 49.9 10.0 204 310-520 135-365 (696)
250 PF02259 FAT: FAT domain; Int 91.0 2.6 5.6E-05 43.9 11.9 103 414-519 184-338 (352)
251 PF14853 Fis1_TPR_C: Fis1 C-te 90.8 0.76 1.6E-05 36.7 5.8 32 491-522 2-33 (53)
252 KOG1915 Cell cycle control pro 90.7 4.9 0.00011 45.5 13.9 107 407-521 66-172 (677)
253 KOG2053 Mitochondrial inherita 90.4 2.1 4.7E-05 51.0 11.5 132 406-554 35-166 (932)
254 COG2912 Uncharacterized conser 90.4 1.2 2.5E-05 46.8 8.4 73 449-524 177-249 (269)
255 smart00185 ARM Armadillo/beta- 90.0 0.49 1.1E-05 33.9 3.9 38 130-168 4-41 (41)
256 PF08631 SPO22: Meiosis protei 89.7 4.4 9.5E-05 42.2 12.2 107 409-519 30-150 (278)
257 PF13374 TPR_10: Tetratricopep 89.7 0.62 1.4E-05 33.2 4.2 29 454-482 3-31 (42)
258 KOG3081 Vesicle coat complex C 89.4 4.6 9.9E-05 42.6 11.7 95 417-521 140-238 (299)
259 KOG1915 Cell cycle control pro 89.4 3.9 8.4E-05 46.2 11.8 99 412-519 402-500 (677)
260 KOG1586 Protein required for f 89.1 9.4 0.0002 39.8 13.5 130 414-543 113-248 (288)
261 KOG2053 Mitochondrial inherita 89.0 6.1 0.00013 47.4 13.7 91 424-522 19-109 (932)
262 COG3898 Uncharacterized membra 88.8 4.8 0.00011 44.5 11.9 97 422-522 196-295 (531)
263 PF13374 TPR_10: Tetratricopep 88.8 0.99 2.1E-05 32.1 4.7 31 414-444 2-32 (42)
264 PF04184 ST7: ST7 protein; In 88.3 22 0.00047 40.6 16.8 63 453-516 259-321 (539)
265 PF02259 FAT: FAT domain; Int 87.8 5.3 0.00012 41.6 11.4 111 411-522 143-290 (352)
266 COG4976 Predicted methyltransf 87.4 0.77 1.7E-05 47.4 4.6 60 461-523 3-62 (287)
267 PF07079 DUF1347: Protein of u 87.4 58 0.0013 37.0 19.7 224 265-514 242-519 (549)
268 PF09613 HrpB1_HrpK: Bacterial 87.2 10 0.00022 37.1 11.9 87 413-507 9-95 (160)
269 COG3629 DnrI DNA-binding trans 86.8 2.5 5.4E-05 44.7 8.2 80 430-519 137-216 (280)
270 PF05843 Suf: Suppressor of fo 86.4 4.7 0.0001 42.1 9.9 103 412-522 33-139 (280)
271 PF04184 ST7: ST7 protein; In 85.3 4.7 0.0001 45.7 9.7 93 422-521 176-290 (539)
272 KOG1070 rRNA processing protei 84.9 74 0.0016 40.7 19.9 101 416-522 1532-1632(1710)
273 PF05843 Suf: Suppressor of fo 84.8 11 0.00024 39.3 11.8 99 417-523 4-103 (280)
274 COG2912 Uncharacterized conser 84.7 5.5 0.00012 41.9 9.3 75 416-498 183-257 (269)
275 KOG3364 Membrane protein invol 83.5 3.7 8E-05 39.3 6.7 75 415-496 33-111 (149)
276 KOG0686 COP9 signalosome, subu 83.3 20 0.00043 40.0 13.1 104 414-519 150-258 (466)
277 KOG4507 Uncharacterized conser 82.4 4.5 9.7E-05 46.7 8.0 92 425-522 224-315 (886)
278 PF10373 EST1_DNA_bind: Est1 D 82.4 4.6 9.9E-05 40.9 7.6 62 433-502 1-62 (278)
279 KOG2471 TPR repeat-containing 82.3 2 4.3E-05 48.6 5.1 86 414-502 283-381 (696)
280 PF10516 SHNi-TPR: SHNi-TPR; 81.5 2 4.3E-05 32.1 3.4 30 491-520 2-31 (38)
281 KOG3364 Membrane protein invol 81.4 21 0.00045 34.4 10.9 86 452-545 31-120 (149)
282 KOG1070 rRNA processing protei 81.3 29 0.00063 44.0 14.7 100 414-522 1497-1596(1710)
283 PF10516 SHNi-TPR: SHNi-TPR; 80.6 2 4.4E-05 32.0 3.2 30 454-483 2-31 (38)
284 cd00020 ARM Armadillo/beta-cat 78.0 3.8 8.2E-05 35.3 4.7 94 63-168 26-120 (120)
285 KOG1585 Protein required for f 77.9 9.3 0.0002 40.1 8.0 108 411-519 107-219 (308)
286 KOG3824 Huntingtin interacting 77.9 5.1 0.00011 43.2 6.3 70 452-524 115-184 (472)
287 KOG1586 Protein required for f 77.8 26 0.00056 36.7 11.1 107 414-521 34-145 (288)
288 KOG2610 Uncharacterized conser 77.2 12 0.00025 41.0 8.8 102 415-521 104-206 (491)
289 COG3947 Response regulator con 76.4 8.5 0.00019 41.2 7.4 65 452-519 278-342 (361)
290 COG3914 Spy Predicted O-linked 76.1 20 0.00044 41.5 10.8 96 420-523 73-175 (620)
291 PF04212 MIT: MIT (microtubule 75.8 6.9 0.00015 32.1 5.3 31 413-443 4-34 (69)
292 PF09613 HrpB1_HrpK: Bacterial 75.6 53 0.0011 32.2 12.1 122 452-581 9-130 (160)
293 KOG1585 Protein required for f 75.5 21 0.00045 37.6 9.7 106 413-518 70-178 (308)
294 TIGR03504 FimV_Cterm FimV C-te 75.2 6.9 0.00015 30.1 4.8 27 493-519 2-28 (44)
295 TIGR02561 HrpB1_HrpK type III 75.1 37 0.00081 33.0 10.8 86 414-507 10-95 (153)
296 KOG3617 WD40 and TPR repeat-co 74.5 17 0.00036 43.9 9.6 166 322-516 822-993 (1416)
297 KOG0530 Protein farnesyltransf 73.7 48 0.001 35.3 11.9 120 395-522 58-179 (318)
298 KOG0530 Protein farnesyltransf 73.3 19 0.00042 38.2 8.9 89 425-521 54-144 (318)
299 PF10373 EST1_DNA_bind: Est1 D 73.2 9.2 0.0002 38.6 6.7 62 472-541 1-62 (278)
300 cd02682 MIT_AAA_Arch MIT: doma 72.9 7.8 0.00017 33.3 5.0 32 412-443 4-35 (75)
301 PF08631 SPO22: Meiosis protei 72.5 40 0.00086 35.1 11.3 94 424-519 3-112 (278)
302 PF12968 DUF3856: Domain of Un 72.4 28 0.00061 33.0 8.9 69 413-482 54-129 (144)
303 cd02683 MIT_1 MIT: domain cont 71.7 14 0.0003 31.6 6.3 31 413-443 5-35 (77)
304 PF13646 HEAT_2: HEAT repeats; 71.5 6.1 0.00013 32.8 4.2 62 103-177 7-68 (88)
305 PF02064 MAS20: MAS20 protein 69.9 15 0.00033 34.3 6.6 42 405-446 54-95 (121)
306 KOG4056 Translocase of outer m 69.6 27 0.00059 33.4 8.3 42 405-446 72-113 (143)
307 PF09986 DUF2225: Uncharacteri 69.1 19 0.00041 36.5 7.8 70 426-498 137-208 (214)
308 cd02681 MIT_calpain7_1 MIT: do 69.0 11 0.00023 32.4 5.0 32 412-443 4-35 (76)
309 PF08424 NRDE-2: NRDE-2, neces 69.0 74 0.0016 34.0 12.6 86 430-523 47-135 (321)
310 PF14863 Alkyl_sulf_dimr: Alky 68.8 14 0.0003 35.2 6.4 50 414-468 70-119 (141)
311 cd02680 MIT_calpain7_2 MIT: do 68.6 7.4 0.00016 33.4 4.0 32 413-444 5-36 (75)
312 PRK15180 Vi polysaccharide bio 68.4 25 0.00054 40.1 9.0 97 413-517 288-384 (831)
313 PF11207 DUF2989: Protein of u 67.9 36 0.00077 34.6 9.3 59 451-510 139-198 (203)
314 cd02678 MIT_VPS4 MIT: domain c 67.5 21 0.00046 30.0 6.5 32 412-443 4-35 (75)
315 COG3629 DnrI DNA-binding trans 67.3 30 0.00065 36.7 9.0 64 413-481 152-215 (280)
316 PF07721 TPR_4: Tetratricopept 65.9 7.3 0.00016 26.0 2.8 23 492-514 3-25 (26)
317 KOG2300 Uncharacterized conser 65.8 93 0.002 35.8 12.7 104 411-520 364-475 (629)
318 PF07720 TPR_3: Tetratricopept 65.7 19 0.00041 26.5 5.1 32 415-446 2-35 (36)
319 cd02684 MIT_2 MIT: domain cont 65.3 21 0.00046 30.3 6.2 32 412-443 4-35 (75)
320 smart00745 MIT Microtubule Int 65.1 27 0.00059 29.0 6.8 32 412-443 6-37 (77)
321 COG2976 Uncharacterized protei 64.9 76 0.0016 32.3 10.8 59 457-515 93-151 (207)
322 TIGR00985 3a0801s04tom mitocho 64.7 77 0.0017 30.7 10.4 43 404-446 80-123 (148)
323 cd02656 MIT MIT: domain contai 63.9 27 0.00058 29.1 6.5 31 413-443 5-35 (75)
324 PF10579 Rapsyn_N: Rapsyn N-te 63.6 38 0.00082 29.6 7.3 64 456-519 9-72 (80)
325 KOG2396 HAT (Half-A-TPR) repea 63.5 2.9E+02 0.0062 32.1 17.9 51 430-485 121-172 (568)
326 PF11817 Foie-gras_1: Foie gra 63.2 36 0.00077 34.9 8.6 63 452-514 177-242 (247)
327 PF13281 DUF4071: Domain of un 63.2 1.2E+02 0.0026 33.6 13.0 86 416-509 181-278 (374)
328 PF11817 Foie-gras_1: Foie gra 62.7 31 0.00068 35.3 8.1 67 414-480 178-245 (247)
329 KOG2041 WD40 repeat protein [G 62.3 52 0.0011 39.2 10.2 82 413-514 795-876 (1189)
330 PHA02537 M terminase endonucle 61.1 1.6E+02 0.0035 30.5 12.8 114 424-543 93-225 (230)
331 PF02985 HEAT: HEAT repeat; I 61.0 7.7 0.00017 27.0 2.3 30 139-169 1-30 (31)
332 PF10255 Paf67: RNA polymerase 60.9 10 0.00023 42.1 4.4 59 460-519 129-193 (404)
333 PF14668 RICTOR_V: Rapamycin-i 60.7 9.8 0.00021 32.4 3.3 40 154-195 2-41 (73)
334 PF07721 TPR_4: Tetratricopept 60.7 9.1 0.0002 25.6 2.5 24 454-477 2-25 (26)
335 PRK13184 pknD serine/threonine 60.3 59 0.0013 40.1 10.9 96 421-522 482-584 (932)
336 KOG0529 Protein geranylgeranyl 60.1 1.2E+02 0.0027 33.9 12.3 90 425-522 39-143 (421)
337 PF09670 Cas_Cas02710: CRISPR- 59.6 1E+02 0.0022 33.9 11.8 103 414-519 131-270 (379)
338 KOG3783 Uncharacterized conser 58.4 56 0.0012 37.6 9.6 122 413-543 266-397 (546)
339 KOG0546 HSP90 co-chaperone CPR 58.4 7 0.00015 42.6 2.5 65 416-485 277-341 (372)
340 COG3898 Uncharacterized membra 58.4 1.1E+02 0.0024 34.4 11.4 96 414-519 120-217 (531)
341 KOG2047 mRNA splicing factor [ 57.5 75 0.0016 37.6 10.4 111 407-519 504-615 (835)
342 PF11207 DUF2989: Protein of u 57.1 37 0.00081 34.4 7.2 59 413-473 140-198 (203)
343 PF04910 Tcf25: Transcriptiona 57.1 1.3E+02 0.0027 33.0 11.9 100 441-548 33-158 (360)
344 PF14863 Alkyl_sulf_dimr: Alky 57.0 29 0.00063 33.1 6.2 55 453-510 70-124 (141)
345 PF07079 DUF1347: Protein of u 56.9 61 0.0013 36.9 9.3 61 413-479 461-521 (549)
346 KOG3617 WD40 and TPR repeat-co 56.9 49 0.0011 40.1 9.0 89 431-519 836-941 (1416)
347 PF06957 COPI_C: Coatomer (COP 55.8 27 0.00059 39.1 6.6 121 413-542 203-346 (422)
348 PLN03200 cellulose synthase-in 55.3 21 0.00045 47.2 6.3 68 108-176 458-525 (2102)
349 KOG4563 Cell cycle-regulated h 54.5 23 0.0005 38.9 5.6 65 410-474 37-104 (400)
350 PF10952 DUF2753: Protein of u 54.4 43 0.00092 31.8 6.5 70 416-485 3-86 (140)
351 KOG1550 Extracellular protein 53.9 94 0.002 35.8 10.8 79 429-519 308-393 (552)
352 KOG0687 26S proteasome regulat 53.7 2.1E+02 0.0046 31.5 12.4 100 413-519 103-203 (393)
353 KOG2114 Vacuolar assembly/sort 53.4 46 0.001 40.2 8.1 31 413-443 367-397 (933)
354 smart00386 HAT HAT (Half-A-TPR 52.4 32 0.00069 22.6 4.2 28 428-460 1-28 (33)
355 PLN03200 cellulose synthase-in 51.9 27 0.00059 46.2 6.5 63 105-168 618-680 (2102)
356 KOG0890 Protein kinase of the 51.9 8E+02 0.017 33.6 20.1 102 415-522 1630-1734(2382)
357 PF10602 RPN7: 26S proteasome 51.6 46 0.00099 32.6 6.8 70 452-521 35-104 (177)
358 KOG2047 mRNA splicing factor [ 51.0 98 0.0021 36.7 10.0 111 407-519 342-454 (835)
359 COG2909 MalT ATP-dependent tra 50.8 1.3E+02 0.0027 36.8 11.2 92 413-504 457-551 (894)
360 KOG1839 Uncharacterized protei 50.7 99 0.0021 39.1 10.6 114 409-522 1010-1131(1236)
361 COG2909 MalT ATP-dependent tra 49.8 1.6E+02 0.0035 36.0 11.8 106 414-519 415-526 (894)
362 TIGR02710 CRISPR-associated pr 48.5 1.9E+02 0.0042 32.1 11.6 63 415-477 131-195 (380)
363 KOG1550 Extracellular protein 48.1 1.8E+02 0.004 33.5 11.9 95 413-519 324-426 (552)
364 KOG1310 WD40 repeat protein [G 47.8 37 0.00081 39.2 6.0 71 410-485 404-477 (758)
365 KOG3616 Selective LIM binding 47.6 1.2E+02 0.0026 36.6 10.0 100 397-513 747-847 (1636)
366 cd02680 MIT_calpain7_2 MIT: do 47.3 55 0.0012 28.1 5.7 30 493-522 9-38 (75)
367 PF04781 DUF627: Protein of un 47.2 29 0.00063 32.0 4.3 49 430-483 60-108 (111)
368 cd02677 MIT_SNX15 MIT: domain 46.8 37 0.0008 28.9 4.6 31 413-443 5-35 (75)
369 PF08424 NRDE-2: NRDE-2, neces 46.1 1.7E+02 0.0037 31.2 10.6 80 435-522 6-97 (321)
370 COG4649 Uncharacterized protei 45.9 3.4E+02 0.0074 27.6 12.8 102 414-519 94-196 (221)
371 cd02681 MIT_calpain7_1 MIT: do 44.8 72 0.0016 27.4 6.0 31 492-522 8-38 (76)
372 COG0790 FOG: TPR repeat, SEL1 44.2 3.2E+02 0.007 27.9 12.0 97 414-519 109-220 (292)
373 TIGR03504 FimV_Cterm FimV C-te 43.9 34 0.00074 26.3 3.6 25 457-481 3-27 (44)
374 PF07219 HemY_N: HemY protein 42.8 1.5E+02 0.0032 26.6 8.1 53 411-468 56-108 (108)
375 COG5159 RPN6 26S proteasome re 42.5 1.2E+02 0.0027 32.8 8.5 108 418-525 7-160 (421)
376 KOG1538 Uncharacterized conser 42.3 5.3E+02 0.011 31.1 14.0 51 463-519 783-833 (1081)
377 COG3118 Thioredoxin domain-con 42.3 59 0.0013 34.9 6.2 54 458-514 139-192 (304)
378 cd02682 MIT_AAA_Arch MIT: doma 42.2 73 0.0016 27.4 5.7 33 490-522 6-38 (75)
379 COG4941 Predicted RNA polymera 41.9 1.2E+02 0.0026 33.4 8.5 87 426-519 308-394 (415)
380 PF07720 TPR_3: Tetratricopept 41.3 66 0.0014 23.6 4.6 20 493-512 4-23 (36)
381 COG3947 Response regulator con 41.1 80 0.0017 34.2 6.9 59 416-479 281-339 (361)
382 PF13513 HEAT_EZ: HEAT-like re 40.5 37 0.00081 26.0 3.5 49 116-166 7-55 (55)
383 PF10345 Cohesin_load: Cohesin 39.9 2.8E+02 0.0061 32.2 11.9 108 412-520 57-169 (608)
384 cd02683 MIT_1 MIT: domain cont 39.6 81 0.0018 26.9 5.6 33 490-522 6-38 (77)
385 COG3914 Spy Predicted O-linked 38.9 1.6E+02 0.0034 34.5 9.3 87 425-519 41-131 (620)
386 PRK15180 Vi polysaccharide bio 38.8 97 0.0021 35.6 7.4 91 423-521 332-422 (831)
387 COG4455 ImpE Protein of avirul 38.1 1.6E+02 0.0034 30.9 8.3 60 421-485 8-67 (273)
388 KOG1464 COP9 signalosome, subu 37.6 91 0.002 33.5 6.6 54 466-519 40-94 (440)
389 KOG1839 Uncharacterized protei 37.2 1.2E+02 0.0025 38.5 8.4 109 411-519 970-1086(1236)
390 KOG4814 Uncharacterized conser 37.0 1.1E+02 0.0023 36.3 7.6 69 453-521 354-425 (872)
391 COG4649 Uncharacterized protei 37.0 1.5E+02 0.0032 30.1 7.6 47 414-466 167-213 (221)
392 COG4455 ImpE Protein of avirul 36.6 1.4E+02 0.003 31.3 7.5 59 461-522 9-67 (273)
393 KOG2300 Uncharacterized conser 35.8 3.4E+02 0.0073 31.5 11.0 99 413-512 45-149 (629)
394 PF13281 DUF4071: Domain of un 34.9 6.8E+02 0.015 27.9 13.3 102 415-520 142-256 (374)
395 KOG2561 Adaptor protein NUB1, 34.7 2.1E+02 0.0045 32.7 9.1 109 413-522 162-299 (568)
396 PF05804 KAP: Kinesin-associat 34.6 81 0.0018 37.8 6.5 113 60-189 306-418 (708)
397 TIGR02561 HrpB1_HrpK type III 34.4 4.5E+02 0.0098 25.7 10.7 91 453-552 10-101 (153)
398 KOG3540 Beta amyloid precursor 33.7 4.8E+02 0.01 30.1 11.7 106 427-544 325-430 (615)
399 PF15015 NYD-SP12_N: Spermatog 33.5 2E+02 0.0044 32.7 8.7 57 419-480 233-289 (569)
400 PF10255 Paf67: RNA polymerase 33.3 65 0.0014 36.0 5.1 62 419-481 127-192 (404)
401 KOG2396 HAT (Half-A-TPR) repea 33.2 2.3E+02 0.005 32.8 9.3 86 431-524 88-174 (568)
402 KOG0292 Vesicle coat complex C 33.2 5.3E+02 0.011 32.1 12.5 106 411-519 988-1113(1202)
403 PF11846 DUF3366: Domain of un 32.3 1.4E+02 0.0031 29.0 6.8 50 430-485 127-176 (193)
404 PF14668 RICTOR_V: Rapamycin-i 32.2 38 0.00083 28.8 2.5 41 280-334 15-55 (73)
405 PF11846 DUF3366: Domain of un 32.0 1.4E+02 0.003 29.1 6.7 48 470-521 128-175 (193)
406 PF04212 MIT: MIT (microtubule 32.0 1.1E+02 0.0025 24.8 5.2 31 491-521 6-36 (69)
407 KOG0985 Vesicle coat protein c 30.8 3.3E+02 0.0072 34.3 10.4 110 415-542 1195-1326(1666)
408 PF04053 Coatomer_WDAD: Coatom 28.9 2.5E+02 0.0054 31.7 8.8 81 414-515 347-427 (443)
409 cd02679 MIT_spastin MIT: domai 28.8 79 0.0017 27.4 3.8 17 469-485 5-21 (79)
410 PF05804 KAP: Kinesin-associat 28.3 2.4E+02 0.0051 34.0 8.8 145 42-199 469-648 (708)
411 COG0790 FOG: TPR repeat, SEL1 27.9 3.8E+02 0.0083 27.3 9.5 47 453-502 109-160 (292)
412 PF04910 Tcf25: Transcriptiona 27.9 8.3E+02 0.018 26.7 12.6 110 409-521 98-224 (360)
413 cd02677 MIT_SNX15 MIT: domain 27.6 1.8E+02 0.004 24.7 5.8 30 493-522 9-38 (75)
414 COG5191 Uncharacterized conser 27.6 79 0.0017 34.5 4.3 81 412-500 105-189 (435)
415 cd02679 MIT_spastin MIT: domai 27.0 1.2E+02 0.0025 26.4 4.5 31 413-443 7-37 (79)
416 PF13646 HEAT_2: HEAT repeats; 26.9 66 0.0014 26.4 3.0 48 106-164 41-88 (88)
417 PF10475 DUF2450: Protein of u 26.9 7.6E+02 0.016 25.9 13.5 96 409-516 122-223 (291)
418 smart00745 MIT Microtubule Int 26.8 2.2E+02 0.0048 23.5 6.2 31 493-523 11-41 (77)
419 PF12925 APP_E2: E2 domain of 26.7 5.8E+02 0.013 25.9 10.0 73 430-510 113-185 (193)
420 cd02684 MIT_2 MIT: domain cont 26.1 1.6E+02 0.0034 25.0 5.2 30 493-522 9-38 (75)
421 PF04826 Arm_2: Armadillo-like 25.7 2.1E+02 0.0046 29.8 7.1 79 105-186 22-101 (254)
422 PRK09687 putative lyase; Provi 25.6 55 0.0012 34.4 2.8 62 104-171 62-123 (280)
423 cd02678 MIT_VPS4 MIT: domain c 25.5 2.1E+02 0.0045 24.0 5.7 31 492-522 8-38 (75)
424 COG5624 TAF61 Transcription in 24.8 30 0.00066 38.4 0.7 21 104-124 447-468 (505)
425 COG1747 Uncharacterized N-term 24.5 1.2E+03 0.026 27.5 14.2 57 462-521 214-290 (711)
426 PF12854 PPR_1: PPR repeat 24.4 1.6E+02 0.0035 20.7 4.2 27 489-515 6-32 (34)
427 cd02656 MIT MIT: domain contai 24.3 2.6E+02 0.0057 23.1 6.2 31 493-523 9-39 (75)
428 COG0751 GlyS Glycyl-tRNA synth 24.2 1.3E+03 0.029 27.8 14.6 67 412-478 617-688 (691)
429 PF07631 PSD4: Protein of unkn 23.6 69 0.0015 30.0 2.8 51 107-160 74-124 (128)
430 KOG3616 Selective LIM binding 23.5 3E+02 0.0065 33.5 8.2 88 418-516 710-817 (1636)
431 PF12854 PPR_1: PPR repeat 23.0 1.6E+02 0.0034 20.8 3.9 27 452-478 6-32 (34)
432 PF00244 14-3-3: 14-3-3 protei 22.9 2.3E+02 0.005 29.1 6.7 51 430-481 142-197 (236)
433 PF03224 V-ATPase_H_N: V-ATPas 22.3 1.9E+02 0.0041 30.5 6.1 66 104-170 113-181 (312)
434 KOG0529 Protein geranylgeranyl 22.3 5.1E+02 0.011 29.3 9.4 83 429-519 90-178 (421)
435 PF01239 PPTA: Protein prenylt 22.2 2.3E+02 0.005 19.4 4.6 28 472-502 2-29 (31)
436 KOG4151 Myosin assembly protei 21.5 1.1E+02 0.0023 36.8 4.3 75 419-501 98-172 (748)
437 PF04190 DUF410: Protein of un 21.1 9.4E+02 0.02 24.9 11.1 100 414-513 10-113 (260)
438 COG5191 Uncharacterized conser 20.9 1.8E+02 0.004 31.9 5.5 78 434-519 93-171 (435)
439 PF09205 DUF1955: Domain of un 20.6 5.4E+02 0.012 25.1 8.0 63 454-519 86-149 (161)
440 PF05053 Menin: Menin; InterP 20.5 1.7E+02 0.0037 34.2 5.4 80 318-440 263-344 (618)
441 PF06743 FAST_1: FAST kinase-l 20.2 44 0.00095 27.9 0.6 34 232-270 38-71 (71)
442 PF12739 TRAPPC-Trs85: ER-Golg 20.1 7.3E+02 0.016 27.5 10.3 102 415-519 209-329 (414)
443 PF10345 Cohesin_load: Cohesin 20.1 9.1E+02 0.02 28.1 11.6 102 414-515 301-429 (608)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.8e-19 Score=179.76 Aligned_cols=124 Identities=27% Similarity=0.297 Sum_probs=113.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
+....++.+|.+||.+++.++|++|+.+|++||+++|. ++++|+|||++|.+||.|+.|++||..||++||.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-----nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--- 147 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-----NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--- 147 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---
Confidence 57778999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
+.|+|-|+|.+|+.+|++++|+..|+++|++ +|.+......+...-++..+.
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999 455556666666655555444
No 2
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=1.7e-18 Score=180.17 Aligned_cols=179 Identities=21% Similarity=0.247 Sum_probs=157.3
Q ss_pred hcCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHH--HHHHHHH
Q 046116 322 LKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLK--VQKRKKE 399 (604)
Q Consensus 322 l~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~k--vE~~~~E 399 (604)
+--|+|+|+||||++++|+||+.|+++.+ |+...++++....+++|.+..+..++..+|..-.... .+.+.+.
T Consensus 75 ifrRaT~yLAmGksk~al~Dl~rVlelKp-----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 75 IFRRATVYLAMGKSKAALQDLSRVLELKP-----DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred HHHHHHHHhhhcCCccchhhHHHHHhcCc-----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 45699999999999999999999999999 9999999999999999999998888888887644222 0122222
Q ss_pred hccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 400 KLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 400 ~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
..+ +.-..+..+...++..|++..||+..++.|+++|| ++.++..||.||...|+...||.|.+.|
T Consensus 150 ~~~---------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-----da~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 150 ALI---------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-----DASLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HhH---------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-----hhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 222 23456777888899999999999999999999999 9999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
-+|..+ +++++|..++.+|..|+.+.++...++||+++|.
T Consensus 216 skLs~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 216 SKLSQD---NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred Hhcccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 999999 9999999999999999999999999999999653
No 3
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=5.3e-18 Score=166.20 Aligned_cols=122 Identities=40% Similarity=0.524 Sum_probs=115.8
Q ss_pred HHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHH
Q 046116 397 KKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDT 476 (604)
Q Consensus 397 ~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~ 476 (604)
+.++.+++++.......+..+|..||.+|++|+|++|...|+.||+++|....+..+.+|.|||.|+++++.++.||.+|
T Consensus 78 e~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 78 EIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 56777888777777889999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++||+|+|. +.+|+.|||.+|.++.+|++|+.||++.++.+|
T Consensus 158 sKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 158 SKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 999999999 999999999999999999999999999999944
No 4
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.2e-16 Score=168.91 Aligned_cols=125 Identities=34% Similarity=0.442 Sum_probs=111.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
++.+.+..+|++||.+|++|+|++||.+|++||+++|+ .+..|+|||.||..+|+|++.++||++||+++|+
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-----epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~--- 181 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-----EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD--- 181 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-----CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---
Confidence 45678999999999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
+.||++||+.+|..+|+++||+.|....-=+ .+-.|.++...++|+++++...
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~----~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCIL----EGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHh----hhcccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999997643222 1234567888899998887654
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.4e-15 Score=163.84 Aligned_cols=248 Identities=20% Similarity=0.193 Sum_probs=157.9
Q ss_pred HHHHHhhcCCchh--------hHHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhcccccc-hhHHHHHHHHh---h
Q 046116 298 ESVCNVSRSSDDW--------QYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRER-VGEAITQTLLQ---D 365 (604)
Q Consensus 298 ~~lc~~~rssd~w--------q~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eLg~~~~-lGd~i~k~L~~---d 365 (604)
..|-|.+++.-+. +-+.+|.=+..+-..+++|.=+|+-.....+-+.-.+-|.-.. --+.|.+.+.+ .
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3567777765542 1122333334455677788888877766666665555443211 13444444444 2
Q ss_pred hhccccCccccccHHHHHHHHHHHH----HHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116 366 YHKVKYGNLKLKSKKAGRALDEIWD----LKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKAL 441 (604)
Q Consensus 366 y~~ik~g~L~~~~~~~~~aL~el~~----~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkAL 441 (604)
|... ++......-+...+..... .+....++.....+...-..+..+...+..||.+|+.|+|.+|+..||+||
T Consensus 308 ~~k~--~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 308 YTKR--EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhH--HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 2221 2222222222222222111 000000111111111112234568899999999999999999999999999
Q ss_pred HhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 442 DLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 442 el~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+|+ ++.+|+|||.||++++++..|++||+.+++++|+ +.++|+|.|.++..+.+|+.|++.|+++++++|
T Consensus 386 kr~P~-----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 386 KRDPE-----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---FIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hcCCc-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999 9999999999999999999999999999999999 999999999999999999999999999999954
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCc
Q 046116 522 KCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPS 560 (604)
Q Consensus 522 ~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~ 560 (604)
++..+...+.+....+..........++.|-++.
T Consensus 458 -----~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpe 491 (539)
T KOG0548|consen 458 -----SNAEAIDGYRRCVEAQRGDETPEETKRRAMADPE 491 (539)
T ss_pred -----hhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHH
Confidence 3334444444444443333333333444444433
No 6
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.8e-16 Score=164.23 Aligned_cols=145 Identities=22% Similarity=0.185 Sum_probs=129.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r 478 (604)
++...+...++.||.+|+.|+|..|+..|.+|+..-+. ........+|.|+|.||+++++|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 67788999999999999999999999999999987442 22235678999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcC
Q 046116 479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCK 558 (604)
Q Consensus 479 ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k 558 (604)
+|.++|+ |.||+||+|+|+..+|+|+.|+.+|++++++ +|.|..+...+.++.++.+......++...+|+.
T Consensus 283 vLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-----~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 283 VLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALKL-----EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999999999999999999999999 5677779999999988888887777778888876
Q ss_pred Cch
Q 046116 559 PSI 561 (604)
Q Consensus 559 ~~~ 561 (604)
...
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 554
No 7
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.9e-15 Score=158.26 Aligned_cols=106 Identities=27% Similarity=0.323 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.++..+.+++.||.+|++|+|..|.++|++||.++|+ ..+.++.+|.|||.++..+|+..+||.||+.|++|||. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---y 320 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---Y 320 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---H
Confidence 3457889999999999999999999999999999998 67789999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.|||.++|.||..+++|++|++||++|++.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999
No 8
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.56 E-value=6.7e-15 Score=153.55 Aligned_cols=108 Identities=31% Similarity=0.314 Sum_probs=101.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
.++..+.+.+++++||.+|++|+|++||.+|+++|..+|. +++++.|||.+|+++++|..|..||+.|+.||..
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~- 163 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL- 163 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-
Confidence 4445667778999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.|||-|||.+...+|+..||.+||+.+|++.|+
T Consensus 164 --Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 164 --YVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999999999999999999999443
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=150.66 Aligned_cols=113 Identities=27% Similarity=0.341 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..++.+||.+|..|+|+.||.+|++||.++|. +..+|+||+.||.++|+|++|++|.++.++++|+ ++|+|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy 73 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGY 73 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHH
Confidence 567899999999999999999999999999999 9999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
.|+|.++..+|+|++|+..|.+.|+.+ |+|..+..-+...-
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d-----~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKD-----PSNKQLKTGLAQAY 114 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcC-----CchHHHHHhHHHhh
Confidence 999999999999999999999999994 44444444444433
No 10
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-13 Score=142.01 Aligned_cols=103 Identities=26% Similarity=0.293 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
.|+.+|+.||.+|+.++|..|+..|+++|.. +++ +.+++++|+|||+|.+.+|+|..||.||.+|+.++|+ |.|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D--~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~K 154 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD--PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLK 154 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC--ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhh
Confidence 7999999999999999999999999999997 444 6689999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
||||=|+|++.+.++++|+.-+...+..+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999998888773
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.45 E-value=1.1e-12 Score=140.15 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..++.+|+.+|..|+|++|++.|++||+++|+ ++.+|.+||.+|+++|+|++|+.++++|++++|+ +..+|
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~ 73 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-----NAELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAY 73 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHH
Confidence 346889999999999999999999999999999 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
+++|.+|+.+|+|++|+..|++++++. |.+..+...+.+...+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLA-----PGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 44555666665554444
No 12
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.9e-13 Score=133.34 Aligned_cols=115 Identities=25% Similarity=0.259 Sum_probs=103.0
Q ss_pred ccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-----CcccchHHHHHHHHHHHHHcC
Q 046116 401 LMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPL-----KMRKERIVLYSNRAQCYLMLK 467 (604)
Q Consensus 401 ~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~-----~~~~~~a~l~~NRA~~ylkLg 467 (604)
.|++ .++.+.+..+.++||.+|+.|+|.+|+.+|..||.. .|. +..+....++.|.++|++..|
T Consensus 168 qlsd---deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 168 QLSD---DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred cCCc---hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 6666 366778899999999999999999999999999875 343 233456789999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 468 KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 468 dy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+|-++++.|+.+|..+|+ |.||||+||+++....+..||..||..+|+++|
T Consensus 245 e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 999999999999999999 999999999999999999999999999999943
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.36 E-value=1e-11 Score=140.79 Aligned_cols=102 Identities=37% Similarity=0.446 Sum_probs=96.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
+....+..++++||.+|+.|+|++|+..|+++|++.|+ +..|.|+|.||.++|+|++|+.+|++|++++|+
T Consensus 122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--- 192 (615)
T TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPD--- 192 (615)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---
Confidence 34567889999999999999999999999999999997 678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.++++++|.+|..+|++++|+.+|..++..
T Consensus 193 ~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 193 YSKALNRRANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887766
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=1.9e-11 Score=114.46 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
+...|..+++.|+|++|+..|.+++.++|+ +..+|.++|.++..+|++++|+..++++++++|+ ++.+++++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence 556899999999999999999999999999 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 497 SQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 497 G~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|.++..+|++++|+..|+++++..|+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999553
No 15
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.4e-12 Score=129.44 Aligned_cols=130 Identities=25% Similarity=0.222 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..++++||.+|....|..||..|++||.++|. .+..|.|||.||+++++|+.+..||.+|++++|+ ..++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~ 80 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKA 80 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCC-----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHH
Confidence 6889999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKS 554 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~r 554 (604)
+|-+|+++.....|++|+..++++..+..+..-+ ....+...+...+...|...+..|
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~----~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT----FGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhCccchhHHHH
Confidence 9999999999999999999999998874332222 333455666777777787776665
No 16
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=6.3e-11 Score=113.26 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
..+.+...|..++..|++++|...|.-+..++|+ ++..|+|+|.|+..+|+|.+||..|.+|+.++|+ ++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQA 105 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchH
Confidence 5678899999999999999999999999999999 9999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
+++.|.|+..+|+.+.|.+.|+.++..+. ..|....+....+..+.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~--~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG--EVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999973 22344455555555443
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=1e-10 Score=105.61 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+......|..+++.|+|++|++.|++++..+|+ ++.++.++|.++..+|++++|+..++++++++|+ +
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~ 84 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-----NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---D 84 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C
Confidence 3445677889999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
...++.+|.++..+|++++|+..|+++++..+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999954
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.22 E-value=9.3e-12 Score=135.15 Aligned_cols=102 Identities=28% Similarity=0.311 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+++++|.+|+.++|+.|+..|++||+++|+ .+.++.|||++|++.++|..|+.|+.+|++++|. +.|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~ 74 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN-----CAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKA 74 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-----ceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhhe
Confidence 4778999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|+|+|.+...++++.+|+.+|+...++.|+
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence 999999999999999999999999999664
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-10 Score=125.41 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=107.7
Q ss_pred ccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 401 LMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 401 ~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
.+....++-.+.-+....+.|..+-++|++++||.+|.+||.+.|. .+..|+|++..|-.+|+.+.|++++++||
T Consensus 375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-----fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-----FADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-----HHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 4455566677788999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 481 eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
.++|. .++|+-++|.+|...|+..+|+..|+.||++.|+.
T Consensus 450 ~~nPt---~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 450 QINPT---FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hcCcH---HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99999 99999999999999999999999999999996643
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=3.5e-10 Score=111.68 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=98.6
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhcCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY-LMLKK--PEAAISDTTRALSLSK 484 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y-lkLgd--y~eAI~D~~rALeLdP 484 (604)
+..+..++.|...|..+...|+|++|+..|++|+.+.|+ ++.++.+.|.++ ...|+ +++|+..++++++++|
T Consensus 67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-----~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-----NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 344557889999999999999999999999999999999 999999999985 78788 5999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+ +..+++.+|.++..+|++++|+..++++++..+
T Consensus 142 ~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 142 N---EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9 999999999999999999999999999999943
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=2e-10 Score=119.48 Aligned_cols=103 Identities=19% Similarity=0.069 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+.++|..+...|++++|+..|++|++++|+ ++.+|.++|.+|..+|++++|+..++++++++|+ +..
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~ 133 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNY 133 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence 35778999999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+++++|.+++..|++++|+.+|+++++..|+
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999553
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=1.4e-10 Score=121.63 Aligned_cols=228 Identities=15% Similarity=0.089 Sum_probs=158.6
Q ss_pred cCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 046116 323 KDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLM 402 (604)
Q Consensus 323 ~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~m 402 (604)
.-|+.-|.+.|.-+.|+.|+-.+..|..- ..+.+.+.-+..|.- |+....... +.+...+..+. +...-
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~v---gd~~~sL~~----iRECLKldpdH--K~Cf~ 261 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTV---GDAENSLKE----IRECLKLDPDH--KLCFP 261 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhh---hhHHHHHHH----HHHHHccCcch--hhHHH
Confidence 34677788889999999999988888431 223333333334433 221111111 11111111000 00000
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
.-...+.+......+......++|.++++.+.+.++.+|. ........+--.+.||..-+++.+||..|+++|.+
T Consensus 262 ----~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~-~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 262 ----FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE-ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc-ccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1122334555566677788899999999999999999998 23334455556789999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCchh
Q 046116 483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSII 562 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~~~ 562 (604)
+|+ ++.++..||.+|+.-.+|++|+.||++|++. ++++..+.+-+++..+..++. .+|.+++..+
T Consensus 337 d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~-----n~sn~~~reGle~Akrlkkqs------~kRDYYKILG- 401 (504)
T KOG0624|consen 337 DPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL-----NESNTRAREGLERAKRLKKQS------GKRDYYKILG- 401 (504)
T ss_pred Cch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHh------ccchHHHHhh-
Confidence 999 9999999999999999999999999999999 455666666666654443333 4456666666
Q ss_pred HHHHHHHHHhHHHHHHHHHhccc
Q 046116 563 EEKLVEKTCRRRKLEKARRKKKE 585 (604)
Q Consensus 563 e~~lvek~~~~~k~ekArRk~~~ 585 (604)
|.++++++++-|||||.-.
T Consensus 402 ----VkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 402 ----VKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred ----hcccccHHHHHHHHHHHHH
Confidence 8999999999999998643
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=2.4e-10 Score=92.44 Aligned_cols=67 Identities=31% Similarity=0.373 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSLSK 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeLdP 484 (604)
.+..+...|..++..|+|++|+..|++||+++|+ ++.+|.|+|.||..+| ++.+|+.++++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3677888899999999999999999999999988 8889999999999998 68999999999998887
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=2.1e-09 Score=85.39 Aligned_cols=98 Identities=31% Similarity=0.343 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.+...|..++..|++++|+..+.++++..|. ...++.++|.++...+++++|+..+++++.+.|. +..+++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence 3667899999999999999999999999998 6789999999999999999999999999999999 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+|.++...|++++|...+.++++..+
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 99999999999999999999998743
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.06 E-value=2.4e-09 Score=121.55 Aligned_cols=102 Identities=14% Similarity=0.004 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|+++++++|+ +...+.++|.++.++|++++|+..+++++++.|+ ++.+
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~ 469 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDV 469 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH
Confidence 4678899999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.++..+|++++|+..|++++++.++
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999654
No 26
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.03 E-value=5.6e-09 Score=90.93 Aligned_cols=107 Identities=10% Similarity=-0.011 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
++.+...|..+++.|+|++|+..|.+++...|+ ......++.++|.++.+.|++++|+..++.++..+|+......++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 356788999999999999999999999999987 122367899999999999999999999999999999833347889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+|.++..+|++++|+..+.++++..|+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999543
No 27
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.8e-09 Score=98.46 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SS 488 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~ 488 (604)
..+....+-.+|..+...|+.++|++.|++||.++|. ++++|+|||++|...|+.++|+.|+++|+++..+. ..
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt 113 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT 113 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH
Confidence 3456778889999999999999999999999999999 99999999999999999999999999999998772 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
--.+|..||.+|..+|+-+.|..||..+.++
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 4568999999999999999999999999988
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.98 E-value=1.5e-09 Score=87.71 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~ 521 (604)
++..|.++|.+++.+|+|++|+.+++++++++|+ ++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6889999999999999999999999999999999 9999999999999999 79999999999999843
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.97 E-value=3.3e-09 Score=117.82 Aligned_cols=113 Identities=22% Similarity=0.170 Sum_probs=105.2
Q ss_pred cChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 402 MSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 402 ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
.....+.-.+..++.+.+.||.+..+|++++|+..|.+|++..|. .+..++|+|.+|-+.|++++|+..|++||+
T Consensus 342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 334455556678999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 482 LSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 482 LdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++|. .+.||.++|..|-.+|+.++|+.+|.+||...|-
T Consensus 417 I~P~---fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 417 IKPT---FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred cCch---HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 9999 9999999999999999999999999999998554
No 30
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.97 E-value=3.5e-10 Score=118.83 Aligned_cols=106 Identities=26% Similarity=0.309 Sum_probs=100.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
++..+.+...+-++..++..|++++||+.|+.||+++|. .+.+|.+|+.++++++++..||.||..|++++|+
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-- 180 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-- 180 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-----hhhhcccccceeeeccCCchhhhhhhhhhccCcc--
Confidence 345557788999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.++.|--||.++..+|++++|..|+..+.+++.
T Consensus 181 -sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 181 -SAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred -cccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999954
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=7.8e-09 Score=115.77 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=110.6
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+-+...+...+.|...||.+--+++++.||++|.+||.++|. .+-+|...|.=+....+|+.|...++.||.+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-----FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-----cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33344455567889999999999999999999999999999999 8889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
+|. |..|||-+|.+|.++++++.|.-.|++|+++ +|.+..+...+-....+.++
T Consensus 485 ~~r---hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 485 DPR---HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred Cch---hhHHHHhhhhheeccchhhHHHHHHHhhhcC-----CccchhHHhhhhHHHHHhhh
Confidence 999 9999999999999999999999999999999 45566666666555544443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.91 E-value=1.3e-07 Score=113.14 Aligned_cols=102 Identities=10% Similarity=-0.100 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+.+.|..+.+.|++++|+..|.++++++|+ ++.++.|+|.++..+|++++|+..+++|++++|+ ++.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~ 680 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD---DPALI 680 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 678899999999999999999999999999999 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+.+|.++..+|++++|+..|++++++.|+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999995543
No 33
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=1.9e-08 Score=96.20 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
.+...+..+...|..+...|+|++|+..|.+++++.|+. ...+.++.++|.+|.++|++++|+..+.++++++|+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 104 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--- 104 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 355678899999999999999999999999999987761 124679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 046116 489 HSKSLWRRSQAYDMMGLA 506 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~ 506 (604)
+..++..+|.++..+|+.
T Consensus 105 ~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred cHHHHHHHHHHHHHcCCh
Confidence 999999999999998873
No 34
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=5e-09 Score=88.61 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=74.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Q 046116 426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL 505 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd 505 (604)
.+|+|+.|+..|.++++..|. .. +...+.++|.||+++|+|++|+..+++ ++.+|. +...++-.|+|+..+|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGK 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCC
Confidence 368999999999999999995 11 567888899999999999999999999 999999 89999999999999999
Q ss_pred HHHHHHHHHHH
Q 046116 506 AKESLMDALTF 516 (604)
Q Consensus 506 ~dEAL~d~~kA 516 (604)
+++|+..|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.88 E-value=3.5e-08 Score=93.29 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=92.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-- 483 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-- 483 (604)
.++..+..+..+...|..++..|++++|++.|.++++..|. ....+.+++.++...|++++|+..+.+++...
T Consensus 57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 131 (234)
T TIGR02521 57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY 131 (234)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 34455667788888999999999999999999999999998 78889999999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|. ....++.+|.++...|++++|...|.++++..+
T Consensus 132 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 132 PQ---PARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33 677888899999999999999999999998843
No 36
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=3.7e-08 Score=93.54 Aligned_cols=103 Identities=15% Similarity=-0.009 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+...|..++..|+|++|+..|.+|+.+.|+ ....+.++.|+|.+|..+|++++|+..+.+|+.++|. +..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~ 107 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQ 107 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHH
Confidence 36888999999999999999999999999999775 2234669999999999999999999999999999999 999
Q ss_pred HHHHHHHHHH-------HcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYD-------MMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~-------~LGd~dEAL~d~~kALkl 519 (604)
++..+|.++. .+|++++|+.++.+++..
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999 888988888777777665
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=2.5e-08 Score=93.47 Aligned_cols=88 Identities=17% Similarity=0.047 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+.....+...|..+...|+|++|+..|.+|++++|. ++..++++|.|+..+|++++|+..+++|++++|+
T Consensus 53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~--- 124 (144)
T PRK15359 53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA--- 124 (144)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 34456889999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 046116 489 HSKSLWRRSQAYDMMG 504 (604)
Q Consensus 489 n~KA~~rrG~a~~~LG 504 (604)
++.++..+|.+...++
T Consensus 125 ~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 125 DASWSEIRQNAQIMVD 140 (144)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999887654
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.80 E-value=4.5e-08 Score=110.32 Aligned_cols=102 Identities=11% Similarity=-0.040 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+...|..+...|++++|+..|.+|++++|+ ++.+|+++|.++..+|++++|+..++++++++|. +
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~ 405 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-----SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---R 405 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---C
Confidence 3444455555555555555555555555555555555 5555555555555555555555555555555555 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..+++.++.+++.+|++++|+..++++++.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 555444555555555555555555555544
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.80 E-value=2.3e-07 Score=87.72 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+.....+...|..++..|++++|+..|.+++...+. ......+.++|.++...|++++|+..+.++++.+|+ +.
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 169 (234)
T TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY---PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RP 169 (234)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---Ch
Confidence 344556778888899999999999999999885321 115677888899999999999999999999999998 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+++.+|.++...|++++|+..++++++.
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999988887
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=7.4e-08 Score=108.61 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=51.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-KT 485 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-Pd 485 (604)
++..+..+..+...|..++..|++++|+..|.+|++++|. ++..+.+++.+++.+|++++|+..+.++++.+ |+
T Consensus 365 l~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~ 439 (553)
T PRK12370 365 NLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD 439 (553)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence 3334444444555555555555555555555555555555 33344444444444555555555555555443 34
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFI 517 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kAL 517 (604)
++.+++.+|.+|..+|++++|...+.+..
T Consensus 440 ---~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 440 ---NPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44445555555555555555555554443
No 41
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=1.2e-07 Score=109.14 Aligned_cols=106 Identities=15% Similarity=0.020 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..+++.|++++|+..|+++++++|+ ++.++.++|.+|.++|++++|+..++++++.+|+ +.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~---~~ 352 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV---TS 352 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---ch
Confidence 345778899999999999999999999999999999 8999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.+++.+|.++..+|++++|+..|+++++..|+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 8888899999999999999999999999977654
No 42
>PRK15331 chaperone protein SicA; Provisional
Probab=98.77 E-value=8.7e-08 Score=92.42 Aligned_cols=120 Identities=14% Similarity=-0.033 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+..+.+-..|..+|++|+|++|...|+-...++|. ++..+..+|.|+..+++|++|+..|..|..++++ ++.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~ 106 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYR 106 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCC
Confidence 35678889999999999999999999999999999 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
..|+.|+||..+|+.+.|...|..+++. +....+......++...++.
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~~------~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNER------TEDESLRAKALVYLEALKTA 154 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999996 33445666565555544443
No 43
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.3e-08 Score=109.52 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
++...-.|-.++-.|+|+.|+.+|+.||...|+ +..+|+.+|..+..-.+..+||+.|++|++|.|. ++.+.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~R 501 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVR 501 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeee
Confidence 567788999999999999999999999999999 9999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCC
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCKHT 526 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~ 526 (604)
|++|.+++.+|.|+||+..|..||....+...+
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999999999999997775543
No 44
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=3.4e-07 Score=106.06 Aligned_cols=105 Identities=9% Similarity=-0.170 Sum_probs=99.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
++..++.+....+.++.+++.+++++|+..+.+++..+|+ ++..++++|.++.++|+|++|+..|++++..+|+
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~- 186 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE- 186 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-
Confidence 3445668889999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.+++..+|.++..+|+.++|...|+++++.
T Consensus 187 --~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 187 --FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=1.9e-07 Score=92.44 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+++.|+|++|+..|.+++...|. .......+.++|.+|..+|++++|+..++++++.+|++.....+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 5778999999999999999999999999999997 12234688999999999999999999999999999983223348
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMM--------GLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~L--------Gd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.+++.+ |++++|+..|+++++..|+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999987 8999999999999999553
No 46
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=3.2e-07 Score=97.29 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=105.3
Q ss_pred HHhccChHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc--HHHHH
Q 046116 398 KEKLMSDEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP--EAAIS 474 (604)
Q Consensus 398 ~E~~ms~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy--~eAI~ 474 (604)
+.-..+...++..++....|..+|..+...| ++++|+..++++|+.+|. +..+|++|+.++.++++. ++++.
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-----nyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-----NYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-----chHHhHHHHHHHHHcCchhhHHHHH
Confidence 3334445566777888999999999999998 689999999999999999 899999999999999984 78899
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.++++++++|. |..||..|+.++..+|++++|+..+.++|+.++.
T Consensus 130 ~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 130 FTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 99999999999 9999999999999999999999999999999544
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.71 E-value=9.7e-07 Score=101.79 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEE----AVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 414 A~~lk~~GN~lfk~Gdyee----AIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
+..+...|..++..|++++ |+..|+++++++|+ ++.++.++|.++..+|++++|+..++++++++|+ +
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~ 317 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---L 317 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C
Confidence 3444455555555555553 55556666665555 5555666666666666666666666666666665 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..+++.+|.++..+|++++|+..|+++++.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555666666666666666666555555
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5e-08 Score=106.48 Aligned_cols=104 Identities=22% Similarity=0.224 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
...++.+...|.-+|-.|++-+|-+.++++|.++|. ...+|..||..|+..++-.+-..|+++|.++||. |+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~ 394 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NP 394 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CC
Confidence 456889999999999999999999999999999999 7888999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..||.||+.++-+++|++|+.||++++.++|.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 99999999999999999999999999999654
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.69 E-value=8.3e-07 Score=100.57 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++.+|. ....+..+|.++...|++++|+..++++++.+|+ +..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 195 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-----SLYAKLGLAQLALAENRFDEARALIDEVLTADPG---NVDA 195 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH
Confidence 4556667777777777777777777777777776 5667777777777777777777777777777777 7777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
++.+|.++...|++++|+..|+++++..
T Consensus 196 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 223 (899)
T TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALR 223 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777663
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=5e-07 Score=104.72 Aligned_cols=100 Identities=8% Similarity=-0.025 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..++.+...|....+.|.|++|...+..+++++|+ +..++.++|.+..+++++++|+..+++++..+|+ +..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~ 155 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAR 155 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHH
Confidence 35889999999999999999999999999999999 9999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+++.+|.++..+|+|++|+..|++++..
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=1.1e-07 Score=76.20 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+|..+++.|+|++|+..|+++++..|. ++.++..+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4677778888888888888888888887 7888888888888888888888888888888877
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.6e-07 Score=99.43 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=89.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH
Q 046116 375 KLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV 454 (604)
Q Consensus 375 ~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~ 454 (604)
+..++++-..+.....++. ..++........++-++.....|.-.|.++...++-..||+.|++|++++|. +..
T Consensus 326 dKyR~ETCCiIaNYYSlr~-eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-----DyR 399 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRS-EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-----DYR 399 (559)
T ss_pred ccCCccceeeehhHHHHHH-hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-----hHH
Confidence 3444455555555555552 2233333344466677788999999999999999999999999999999998 555
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+|+-+|++|--++-..=|+-++++|+++.|+ ....|.-+|.||.++++.+||++.|.+++..
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPN---DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555 5555555555555555555555555555555
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.7e-07 Score=99.25 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=100.2
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-------MRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
+.....++.++-+|..++-..+.+.|+..|.++|.++|+. +.......+-++|.-.++.|+|..|...|+.||
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 3445578899999999999999999999999999999982 112245567789999999999999999999999
Q ss_pred hcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 481 SLSKTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 481 eLdPd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+||++ .++++.|++|+.++..+|+.++|+.|+.+++++++
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 999995 56889999999999999999999999999999943
No 54
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=1.4e-06 Score=92.45 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=99.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYI--EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~Gdy--eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP 484 (604)
++..++....|..+|..+.+.|++ +++++.++++|+.+|. +..+|++|+.++..+|+|++|+.+++++|++||
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 344556777899999888888874 7899999999999999 999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 485 TMSSHSKSLWRRSQAYDMM---GLA----KESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~L---Gd~----dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
. |..||++|+.++..+ |.+ ++++....++|+..| .|.+.=.++..++.
T Consensus 174 ~---N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 174 R---NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFK 228 (320)
T ss_pred C---chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHh
Confidence 9 999999999999887 333 467777789999954 44444444444443
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.62 E-value=5e-07 Score=94.11 Aligned_cols=101 Identities=14% Similarity=-0.032 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.++.+..+...|..+...|+|++|+..|+++++++|+ +...+.|+|.++...|++++|+.+++++++++|+ +
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~---~ 165 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN---D 165 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C
Confidence 3346789999999999999999999999999999999 8999999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+...+- ...+...+++++|+..|.+++..
T Consensus 166 ~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 166 PYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 531111 12345678999999999877654
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=9.5e-07 Score=89.23 Aligned_cols=98 Identities=20% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+....+.|..++++|++..|.....+||+.+|+ +...|.-||..|.++|+.+.|-+.|++|++++|+ +...+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVL 106 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchh
Confidence 445556666666666666666666666666666 6666666666666666666666666666666666 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+-|.-++..|++++|...|++|+..
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 66666666666666666666666654
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.58 E-value=1.1e-06 Score=90.77 Aligned_cols=106 Identities=7% Similarity=-0.120 Sum_probs=93.8
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 415 FMLKQQGNQE-FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 415 ~~lk~~GN~l-fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
....+.+..+ ++.|+|++|+..|.+.|...|+ ....+.+++.+|.+|+..|+|++|+..+.++++..|+......++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4556666665 6789999999999999999998 233367899999999999999999999999999999866678999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+++|.++..+|++++|+..|+++++..|+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999664
No 58
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-06 Score=91.20 Aligned_cols=126 Identities=14% Similarity=0.016 Sum_probs=110.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLS 483 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLd 483 (604)
+..++..++.|.-.|..++..|++..|...|.+|+++.|+ ++.++.-.|.+++... .-.++..-+++|+++|
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-----n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-----NPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 4456668999999999999999999999999999999999 8999999998888665 4678999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
|+ +..+.+-+|..++..|+|.+|+..++..++.. |.+.+-...+++.|......
T Consensus 224 ~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-----p~~~~rr~~ie~~ia~~~~~ 277 (287)
T COG4235 224 PA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-----PADDPRRSLIERSIARALAQ 277 (287)
T ss_pred Cc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHHHHhc
Confidence 99 99999999999999999999999999999994 45555666677766655443
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=3.4e-06 Score=85.29 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=90.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
++.+++....+..++..+.+.|+.+.|-+.|.+|+.++|+ +..+++|-|.-+...|+|++|...+++|+. +|..
T Consensus 62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y 135 (250)
T COG3063 62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY 135 (250)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC
Confidence 3445556778888888888888888888999999998888 888888888888888888888888888887 4664
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.....++-+.|.|-++.|+++.|..+|+++|++++
T Consensus 136 ~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 136 GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 44677888888888888888888888888888844
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.56 E-value=5.4e-06 Score=87.51 Aligned_cols=100 Identities=18% Similarity=0.063 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA 492 (604)
+..+...|..+++.|++++|+..|.++++..|+ ....+..+|.+|.+.|++++|+..++++++.+|+ + ..+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~ 251 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQ-----CVRASILLGDLALAQGDYAAAIEALERVEEQDPE---YLSEV 251 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---hHHHH
Confidence 445677888889999999999999999999988 7888889999999999999999999999998887 5 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..++.+|...|++++|+..++++++..|
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 78889999999999999999999988833
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.56 E-value=2e-06 Score=97.48 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
.....+...|..+...|++++|+..|+++++..|+ ++.++.+++..+...|+ .+|+..+++++++.|+ +..
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~ 838 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-----NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN---IPA 838 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC---CcH
Confidence 35678889999999999999999999999999999 89999999999999999 8899999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
.+..+|.++..+|++++|+..|+++++..+ .+..+...+...+
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~ 881 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP-----EAAAIRYHLALAL 881 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Confidence 999999999999999999999999999843 3444444444433
No 62
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.54 E-value=4.2e-07 Score=74.06 Aligned_cols=70 Identities=30% Similarity=0.339 Sum_probs=61.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
.+.++++++|++|++.+++++.++|+ ++.++.++|.+|.++|+|.+|+.+++++++++|+ +..+..-++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~---~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-----DPELWLQRARCLFQLGRYEEALEDLERALELSPD---DPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC---cHHHHHHHHh
Confidence 46788999999999999999999999 8999999999999999999999999999999999 7776655443
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.53 E-value=6.9e-06 Score=100.33 Aligned_cols=110 Identities=16% Similarity=0.027 Sum_probs=94.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc---------hHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE---------RIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~---------~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
..+..+..+...|..+++.|++++|+..|+++++.+|+..... ......+++.++++.|++++|+..++++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444577889999999999999999999999999999721110 1113346688999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++++|+ +..+++.+|.++...|++++|+..|+++++..|
T Consensus 378 l~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 378 RQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999 999999999999999999999999999999944
No 64
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=2.8e-07 Score=73.83 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 457 SNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 457 ~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+|..++..|+|++|+..++++++.+|+ +..+++.+|.++..+|++++|+..|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 36799999999999999999999999999 9999999999999999999999999999999553
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.3e-06 Score=89.45 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+....+..+|...+..|+|.+|+..+.+|..+.|+ +..+|+-+|.+|.++|++++|-..+.+|+++.|+ .+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~ 169 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPS 169 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cch
Confidence 34556777999999999999999999999999999 9999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
.+.++|..|+-.|+++.|...+..+... .+.+..+..-+..+..++...
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~-----~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLS-----PAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999999999999888 344666777777776665543
No 66
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.51 E-value=1.7e-06 Score=105.48 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc-------------------------------------hH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE-------------------------------------RI 453 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~-------------------------------------~a 453 (604)
+..+..+...|..++..|++++|++.|+++++++|...... ..
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 34566788899999999999999999999999999821100 01
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+.++|.++...|++++|+..++++++++|+ +..+++.+|.+|..+|++++|+..|+++++..|
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 12334566777899999999999999999999 999999999999999999999999999999844
No 67
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=6.6e-07 Score=100.61 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..-.+|.-.|..+.++++|+.|...|.+|++++|. +.++....+..+.++|+.++|+..+++|+.+||. +
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n 556 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---N 556 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---C
Confidence 3456677888888888899999999999999999998 8888888888999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
+-..|.+|.+++.++++++|+..+++.-++- |++..+...+-+..++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-----P~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV-----PQESSVFALLGKIYKR 603 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHH
Confidence 8888899999999999999998888887773 3444455555444433
No 68
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.49 E-value=4.2e-06 Score=88.35 Aligned_cols=101 Identities=13% Similarity=0.039 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..+.+.|++++|++.|.++++.+|.. ....+..++.+|.+.|++++|+..++++++++|+ ...
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~- 284 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY----LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG---ADL- 284 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chH-
Confidence 35577889999999999999999999999999871 3567888999999999999999999999999998 654
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..++.++...|++++|+..++++++..|
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 48899999999999999999999999843
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.49 E-value=1.6e-06 Score=104.17 Aligned_cols=108 Identities=20% Similarity=0.091 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
..+......|++++|+..|.+|++++|+ +.++.++|.++.++|++++|+..++++++++|+ +..+++.+|.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~ 651 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS------ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGY 651 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 4455556679999999999999999996 678999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 499 AYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
++..+|++++|+..|+++++..| .+..+...+.....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P-----~~~~a~~nLA~al~ 688 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLP-----DDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 99999999999999999999944 44444444444443
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.9e-06 Score=85.15 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHcCC
Q 046116 427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY-DMMGL 505 (604)
Q Consensus 427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~-~~LGd 505 (604)
.++.++++..|.++++.+|+ ++..|.++|.+|..+|++++|+..+++|++++|+ +...++.+|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCC
Confidence 67789999999999999999 9999999999999999999999999999999999 999999999985 67788
Q ss_pred --HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116 506 --AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM 538 (604)
Q Consensus 506 --~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl 538 (604)
+++|...++++++.+| ++......+...
T Consensus 124 ~~~~~A~~~l~~al~~dP-----~~~~al~~LA~~ 153 (198)
T PRK10370 124 HMTPQTREMIDKALALDA-----NEVTALMLLASD 153 (198)
T ss_pred CCcHHHHHHHHHHHHhCC-----CChhHHHHHHHH
Confidence 5999999999999944 444444444333
No 71
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-06 Score=95.70 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
--||-+--+++++.|+..|++|+.++|. ...+|..+|.=|+.+++-..||..+++|++++|. ..+|||.+||
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~-----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLGQ 406 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPK-----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLGQ 406 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcc-----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhhH
Confidence 4578888899999999999999999999 9999999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 499 AYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+|..++...=|+-.|++|++..|++
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999995543
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.3e-06 Score=78.89 Aligned_cols=91 Identities=10% Similarity=-0.039 Sum_probs=80.3
Q ss_pred HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 435 KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 435 e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
+.|.++++.+|. +......+|.+++..|++++|+..+++++.++|+ +..+++++|.++..+|++++|+..|+
T Consensus 4 ~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSE-----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChh-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999 7899999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHhchhhcCCCCCCCHHHHHHHH
Q 046116 515 TFIGSRMKCKHTNRVKIPYYAAVM 538 (604)
Q Consensus 515 kALkl~~~~~d~~~~~i~~~l~rl 538 (604)
++++.. |.+......+...
T Consensus 76 ~~~~~~-----p~~~~~~~~la~~ 94 (135)
T TIGR02552 76 LAAALD-----PDDPRPYFHAAEC 94 (135)
T ss_pred HHHhcC-----CCChHHHHHHHHH
Confidence 999993 3444444444443
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=5.4e-06 Score=82.07 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCcccchH------------HHHHHHHHHHHHcCCcHHHHH
Q 046116 415 FMLKQQGNQEFWA--------GYIEEAVKKYSKALDLCPLKMRKERI------------VLYSNRAQCYLMLKKPEAAIS 474 (604)
Q Consensus 415 ~~lk~~GN~lfk~--------GdyeeAIe~YtkALel~P~~~~~~~a------------~l~~NRA~~ylkLgdy~eAI~ 474 (604)
..+...|..+++. |++++|++.|++++...|+......+ ....++|..|++.|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4577788888876 88999999999999999983111111 112478999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++++++..|+.....++++++|.++..+|++++|...++...+.
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998774336799999999999999999999977766554
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=5.5e-07 Score=72.35 Aligned_cols=67 Identities=24% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
+++.|+|++|+..|++++..+|+ +..++.++|.||++.|++++|...+.+++..+|+ ++..+.-+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHhc
Confidence 47889999999999999999999 8999999999999999999999999999999999 7666655554
No 75
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.45 E-value=2.7e-06 Score=84.08 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+++.|+|.+|+..|++.+...|. .+....+...+|.+|++.|+|.+|+..+++-++..|+...-..|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 5778999999999999999999999999999987 45677888999999999999999999999999999995555679
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGL-----------AKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd-----------~dEAL~d~~kALkl~~~~~ 524 (604)
+|.+|.+++.+.. ..+|+..|+..++..|++.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9999999887643 3589999999999977644
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.42 E-value=4.6e-06 Score=97.76 Aligned_cols=101 Identities=9% Similarity=-0.103 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.......+|..+...|++++|++.+++++...|. ++.++.++|.++...|++++|+..+++|++++|+ +..+
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l 429 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINL 429 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHH
Confidence 3456678999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++..+|++++|...++.+++..|
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999944
No 77
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.42 E-value=6e-06 Score=84.31 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+-..|..++++|+|++|++.|.+.+...|. .+....+..++|.+|+++++|++|+..+++.+++.|+.+....+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3566788999999999999999999999999998 23445556899999999999999999999999999996656789
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGL------------------AKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd------------------~dEAL~d~~kALkl~~~~~ 524 (604)
+|.+|.++..+++ ..+|+..|+..++..|+.+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999876651 3578899999999977654
No 78
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.42 E-value=4.6e-06 Score=78.92 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|...++.|+|++|++.+.......|- .+....+...++.+|++.++|++|+..+++=|+|+|+...-.-|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3578899999999999999999999999999887 44567888899999999999999999999999999994334568
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGL---------------AKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd---------------~dEAL~d~~kALkl~~~~~ 524 (604)
+|.+|.+++.+.. ..+|+.+|+..++..|++.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999999987 8999999999999977654
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=2.7e-06 Score=79.20 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
........|..++..|+|++|+..|.++++..|+ ......+..++|.+++..|+|++|+..++.+ .-.+- .+.+
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~---~~~~ 120 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF---KALA 120 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch---HHHH
Confidence 3567888999999999999999999999998876 3455778899999999999999999999662 22233 5678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFI 517 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kAL 517 (604)
+..+|.++..+|++++|+..|++||
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8889999999999999999999885
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.37 E-value=1.2e-06 Score=89.57 Aligned_cols=118 Identities=16% Similarity=0.024 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+...|+.+.+.|++++|+..|.+|++++|+ +..+....+..++..|+++++...++...+..|+ ++.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---~~~ 215 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---DPD 215 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---SCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---HHH
Confidence 45778999999999999999999999999999999 8999999999999999999988888887777777 666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
.+..+|.++..+|++++|+..|+++++. .|++..+...+...+...
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~-----~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKL-----NPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHH-----STT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHhccccccccccccccccccc-----cccccccccccccccccc
Confidence 7888899999999999999999999998 445555665555554443
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=2.9e-06 Score=91.02 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+..+|..++..|+|++|+..+++||+++|. .+.+|+++|.+|+.+|+|++|+.+++++++++|+ +..
T Consensus 34 ~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~---~~~ 105 (356)
T PLN03088 34 NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-----LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG---DSR 105 (356)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHH
Confidence 35678899999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcC
Q 046116 492 SLWRRSQAYDMMG 504 (604)
Q Consensus 492 A~~rrG~a~~~LG 504 (604)
+...++.+...+.
T Consensus 106 ~~~~l~~~~~kl~ 118 (356)
T PLN03088 106 FTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888877663
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.36 E-value=5.7e-06 Score=96.97 Aligned_cols=101 Identities=11% Similarity=-0.013 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+...|++++|+..|.++|+++|. ++.++.+++.++...|++++|+..++++++.+|+ +..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~---~~~- 118 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD---KAN- 118 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH-
Confidence 4567889999999999999999999999999999 7888999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.++...|++++|+..|+++++..|+
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999443
No 83
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=2.2e-06 Score=94.00 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV---LYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~---l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
...++..+..+.++|+.+++.|+|++|+..|++||+++|+ ++. +|+|+|.||.++|++++|+.++++|+++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-----~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-----PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999999999999 664 59999999999999999999999999985
Q ss_pred CC
Q 046116 484 KT 485 (604)
Q Consensus 484 Pd 485 (604)
+.
T Consensus 143 n~ 144 (453)
T PLN03098 143 NL 144 (453)
T ss_pred ch
Confidence 43
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=2.7e-06 Score=93.24 Aligned_cols=69 Identities=10% Similarity=-0.021 Sum_probs=65.8
Q ss_pred hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 443 LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS---LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 443 l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA---~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+|+ ++..|+|+|.+|+++|+|++|+..|++||+++|+ +..+ ||++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~-----~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVK-----TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677 9999999999999999999999999999999999 8865 999999999999999999999999996
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.4e-06 Score=93.73 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=103.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRK--ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~--~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP 484 (604)
....+...-.+.+.|-..|..+.|.+|+..|..+++.-+....+ -....+.|+|.+|.+++.|++||..+++||.+.|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 33444567788999999999999999999999999654331111 2567899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
. ++.+|--.|.+|..+|+++.|+..|.++|-+.| .+.-+...+...+.
T Consensus 487 k---~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-----~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 K---DASTHASIGYIYHLLGNLDKAIDHFHKALALKP-----DNIFISELLKLAIE 534 (611)
T ss_pred C---chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999944 44445555554443
No 86
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=2.1e-06 Score=94.64 Aligned_cols=105 Identities=24% Similarity=0.272 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---KKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---gdy~eAI~D~~rALeLdPd 485 (604)
+.+..++..+.+||..|..+....||..|.+++...|. ...+|.|||.++++. |+--.|+.||..|+++||.
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~-----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD-----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc-----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 44557899999999999999999999999999999999 899999999999987 4778899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..||+|+++.++..++++.+|+.+...+.-..|
T Consensus 444 ---~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 444 ---IQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999999999998887777655
No 87
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=4e-06 Score=68.27 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=56.5
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 460 AQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 460 A~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+|+..++|++|+..+++++.++|+ ++.+++.+|.++..+|++++|+.+|+++++..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 56899999999999999999999999 999999999999999999999999999999955
No 88
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-06 Score=92.10 Aligned_cols=124 Identities=27% Similarity=0.216 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-----------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP---L-----------KMRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P---~-----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
.....+..++.||..|++++|..|...|.+++..-. . ........++.|.+.|-++++.+..|+..
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence 344577889999999999999999999999998632 1 12344667888999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
+..+++.+++ .++||||+++++..+.++++|++++..+....| .+..+...+...-++
T Consensus 298 ~~~~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p-----~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 298 TNEALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP-----NDKAIEEELENVRQK 355 (372)
T ss_pred cccccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc-----chHHHHHHHHHhhhH
Confidence 9999999999 999999999999999999999999999998843 344455554444333
No 89
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=2.9e-05 Score=71.52 Aligned_cols=103 Identities=19% Similarity=0.024 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+.+.|..+-..|+.++|+..|.+|++..+. ......++.++|.++..+|++++|+..+++++.-.|+...+.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 35678889999999999999999999997655 2346778999999999999999999999999998777444666677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
-.+.++..+|+++||+..+..++--
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7899999999999999998887754
No 90
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.19 E-value=1.1e-05 Score=93.38 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+.++-+.+.+.++...|+|.+|+..|+.++...+.+ +..+|.+.|.||..+|.|++|+..+.++|.++|+ +.
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~----~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~---~~ 483 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ----NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD---NL 483 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---ch
Confidence 3467889999999999999999999999999998885 6899999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+...++.++..+|+.++|++.+..-..-
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 99999999999999999999988776644
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=3.1e-06 Score=70.04 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLS---KTMS-SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd---Pd~~-~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
.+.++.|+|.+|..+|+|++|+..+++|+++. ++.. ....+++++|.++..+|++++|+..++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56777788888888888888888888877652 1100 135677778888888888888888888877763
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.16 E-value=1.7e-05 Score=82.82 Aligned_cols=102 Identities=17% Similarity=0.034 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCCHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSHSK 491 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n~K 491 (604)
....+...|..+...|++++|+..|.+++++.|+ ++.++.++|.+|...|++++|+..+.+++.+.|.. .....
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 4566778899999999999999999999999999 78999999999999999999999999999998751 11245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++.+|.++...|++++|+..|++++..
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 6788999999999999999999999766
No 93
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.5e-05 Score=83.12 Aligned_cols=106 Identities=20% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.++-.+..+..+-+++-+|.+.|.|+.||+....||.++|. +..+|..++.+|+.+|+|.+|+..|++||+++|+
T Consensus 107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 34445567889999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhc
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAK---ESLMDALTFIGS 519 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~d---EAL~d~~kALkl 519 (604)
|....-.+..+-..++... .+...+..+..+
T Consensus 182 ---Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 182 ---NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred ---cHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 7766666666666666655 444444444433
No 94
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=3.2e-05 Score=79.88 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+.+.+..+++.|+|.+|...|..-|...|+ ....+.+++-++.+++.+|+|++|...+..+++-.|+.+.-++++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~--s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN--STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 345889999999999999999999999999998 445677888899999999999999999999999999865567889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
+.+|.+...+|+.++|...|+++++..|+..
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999999999977543
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.13 E-value=2.2e-05 Score=89.84 Aligned_cols=101 Identities=21% Similarity=0.166 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAIS--DTTRALSLSKTMSS 488 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~--D~~rALeLdPd~~~ 488 (604)
+-.+..+...|..+..+|++.+|.+.|..|+.++|+ .+....-+|.++++.|+..-|.. ....|+++||.
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-----hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--- 752 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-----HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--- 752 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---
Confidence 345677899999999999999999999999999999 89999999999999999888888 99999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|.+|||.+|.++..+|+.++|...|+.|+.+
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.12 E-value=4.5e-05 Score=88.56 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---------------------------
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--------------------------- 466 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--------------------------- 466 (604)
+..+..++|.+|-.|++++|++...++|..+|. .+..|+.+|.+|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 555566666666666666666666666666665 455555555555555
Q ss_pred -------CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 467 -------KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 467 -------gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|++..|+-.+++||+++|. +.+.+|+++..|.++|++..|...|.+.+.++|
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 5555566666666666666 666666666666666666666666666666633
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.11 E-value=1.6e-05 Score=65.76 Aligned_cols=72 Identities=22% Similarity=0.205 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
+..+..+.+.|..++..|+|++|+..|.+++++ .++ .....+.++.|+|.||..+|++++|+..+++|+++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 346788999999999999999999999999987 222 233468899999999999999999999999999863
No 98
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.08 E-value=8.9e-05 Score=83.28 Aligned_cols=108 Identities=19% Similarity=0.050 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC-----
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK----- 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP----- 484 (604)
.+..+.+.|..+++.|+|++|..++.+|+++.-. ...+.-+..++|.+..+..++++++|+..+.+++++--
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 3333444444444444444444444444443110 11122334444444444444444444444444443311
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
++.--++.+-++|.+|+++|+|+||...|++|+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 100034556677777777777777777777777763
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=7.1e-05 Score=82.36 Aligned_cols=102 Identities=26% Similarity=0.208 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.++.+-.+-..|..+++.++..+|++.+.+++.++|. ...+..|+|++|++.|++.+||..++..+.-+|+ +
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---d 407 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---D 407 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---C
Confidence 3445667778899999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..|..+|++|..+|+..+|...+-+.+.+
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 999999999999999999999999888888
No 100
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.07 E-value=8.9e-06 Score=83.15 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.++..++........+..+...|++++|.+.+.......|. ++.++...|.+|..+|++++|+..++++++.+|+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-----DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----HHHHHHHHHHHhcccccccccccccccccccccc
Confidence 34445556677888899999999999988888888888777 7788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++..+...|.++...|++++|...++++++.
T Consensus 247 ---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 ---DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ----HHHHHHHHHHHT------------------
T ss_pred ---ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998875
No 101
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8.8e-05 Score=80.21 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+.+.+-.+.+.++|.+|+...+++|+++|. ++.+++.||.+++.+|+|+.|+.|+++|++++|+ |-.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-----N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~ 328 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-----NVKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAAR 328 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHH
Confidence 446778888999999999999999999999999 9999999999999999999999999999999999 98888
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKES-LMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEA-L~d~~kALkl~~ 521 (604)
..+..+..+..++.+. .+.|...+....
T Consensus 329 ~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 329 AELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888877666 566777777644
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00037 Score=73.79 Aligned_cols=103 Identities=17% Similarity=0.003 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
-.++...-+.|-+..+|++||+.-.+...+.|.+....-+.+|+.+|+.+....+++.|+....+|++-||+ .+.|-
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAs 217 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRAS 217 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehh
Confidence 445666677777778888888888888888877667777888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.-+|.++...|+|..|++.++.+++.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHh
Confidence 88888888888888888888888877
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00016 Score=79.77 Aligned_cols=122 Identities=16% Similarity=0.049 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
.........+...+..|++++|...++..|...|+ ++-++..++.++++.++..+|++-+++++.++|+ ..-
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~ 375 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-----NPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPL 375 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccH
Confidence 34567788899999999999999999999999999 9999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNAT 546 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~ 546 (604)
..+.+|++|.+.|++.+|+..++..+.. +|.++..-.++.+...++....
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~-----~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFN-----DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHhCchH
Confidence 8999999999999999999999999998 4556667778877777666553
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=5.8e-05 Score=72.66 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+.-|.+.|-.+-.+|+|++||..|.+|+.++|+ ++..+.|.|.||+++|+.+.|.+.++.|+.+... .+.
T Consensus 65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-----dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~-~~~ 138 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-----APQAPWAAAECYLACDNVCYAIKALKAVVRICGE-VSE 138 (157)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-Chh
Confidence 3446889999999999999999999999999999999 9999999999999999999999999999998843 123
Q ss_pred HHHHHHHHHHHH
Q 046116 490 SKSLWRRSQAYD 501 (604)
Q Consensus 490 ~KA~~rrG~a~~ 501 (604)
...+..+++.+.
T Consensus 139 ~~~l~~~A~~~L 150 (157)
T PRK15363 139 HQILRQRAEKML 150 (157)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.00022 Score=74.45 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+.++|.++...|++++|+..++++++++|+ +..++..+|.+++..|++++|+..++++++..+
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4556678899999999999999999999999999 999999999999999999999999999999854
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=88.00 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+.+....|+..+.+++|++|..++..+++++|- ....|++++.|.++++++..|..+|.+++.++|+ |..+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~ea 555 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEA 555 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhh
Confidence 3445566677778889999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
|.+++.+|..+|+-.+|...+++|++..
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999984
No 107
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=3.1e-05 Score=78.09 Aligned_cols=103 Identities=19% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+.-+.++|+.+=..|-..-|--.+++++.+.|+ .+.+++.+|.-+...|+|+.|.+.++.++++||. +--
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Y 134 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNY 134 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chH
Confidence 46888999999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|+.+||.+++--|+|.-|.+|+.+....+|+
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 9999999999999999999999999888554
No 108
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.98 E-value=5.7e-05 Score=88.35 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA 492 (604)
+..+...+|.+|-+|+|+.+...+..||...-. ..+.+..++++|.+|..+|+|++|..+|-++++.+|+ + .-+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d---~~~l~ 344 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTEN--KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND---NFVLP 344 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC---Ccccc
Confidence 344444444444445555554444444444321 1123333444455555555555555555555544444 3 444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++.+|+.+...|++++|...|.++++.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 444455555555555555554444444
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=1.4e-05 Score=64.16 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=51.9
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 463 ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+++.|+|++|+..+++++..+|+ +..+++.+|.+|...|++++|...+.++++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 36789999999999999999999 999999999999999999999999999999944
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.001 Score=70.59 Aligned_cols=120 Identities=15% Similarity=0.030 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
....|.-+.+.+..+....+++.|+....+|++.+|. .+.+-..+|.+++..|+|.+|++.+.++++-||+ +
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---y 247 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-----CVRASIILGRVELAKGDYQKAVEALERVLEQNPE---Y 247 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH---H
Confidence 3456778889999999999999999999999999999 6777777899999999999999999999999999 5
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 490 -SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 490 -~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
+...-.+..||.++|+.++.+.-++++.+..++ ....-.+.+++..+.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g------~~~~l~l~~lie~~~ 296 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG------ADAELMLADLIELQE 296 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC------ccHHHHHHHHHHHhh
Confidence 567888999999999999999999999988443 334445555544433
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=5.5e-05 Score=84.52 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=104.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Q 046116 404 DEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK------------------------------------ 447 (604)
Q Consensus 404 ~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~------------------------------------ 447 (604)
+....++++.++.|...|......++=..||..+.++++++|++
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~ 388 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH 388 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence 34567788899999999999999999999999999999999971
Q ss_pred ------------------------------------cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 448 ------------------------------------MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 448 ------------------------------------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+.++.++.-+|..|...|+|+.|+..++.||..+|+ +..
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---d~~ 465 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYL 465 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---hHH
Confidence 11246778888999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
.|.|+|-++..-.+..||+..|++|+++.|+-
T Consensus 466 lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 466 LWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999995543
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00011 Score=58.10 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.++|.++...|++++|+..++++++..|+ +..+++.+|.++...|++++|+..|+++++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999999999999999 889999999999999999999999999999843
No 113
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=4.4e-05 Score=83.27 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+.++||..|.+|+++.|.+.|.+||.-+.. -..+++|.+..+-++|+.++|+..+-+.-.+--+ +.+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~il~n---n~ev 560 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEV 560 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHH
Confidence 5678899999999999999999999999999888 7889999999999999999999988877666666 7899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
++.++.+|..+.+..+|++.+-.+..+.| .++.+...+..+....-.
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip-----~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIP-----NDPAILSKLADLYDQEGD 607 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCC-----CCHHHHHHHHHHhhcccc
Confidence 99999999999999999999988888843 445566666655544333
No 114
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.88 E-value=0.0015 Score=73.69 Aligned_cols=128 Identities=19% Similarity=0.109 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
.++.+..+.+.+..+..+++|++|+.+|.+++++. |.+.+...+..+.|+|.+|+++|+|++|...+++||.+....
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 34577889999999999999999999999999973 333334578899999999999999999999999999875220
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116 487 -----SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM 538 (604)
Q Consensus 487 -----~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl 538 (604)
....++++++|..+..++++.+|-.-|.+++... +.-.|..+.+......+
T Consensus 401 ~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 401 LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNL 456 (508)
T ss_pred ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHH
Confidence 1147899999999999999999999999999886 44444555555554444
No 115
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.86 E-value=0.00013 Score=86.38 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
.....+...|++++|+..+.+++.-.|. ....+...|..|..+|+|++|+..++++++.+|+ ++.+++.++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~-----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~ 144 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNI-----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIM 144 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Confidence 4444445556666666666666622222 2333333355666677777777777777777777 6666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 046116 499 AYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALkl 519 (604)
++...++.++|+..++++.+.
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHhhcCCHHHHHHHHHHhccc
Confidence 677777777777776666666
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00014 Score=79.55 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.....+..++..++-.+|+....++|...|. ++.++..-|..+++.++++.|+..+++|+++.|+ ..++|+.
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-----d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~ 273 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-----DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQ 273 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHH
Confidence 3445677788888999999999999999999 8999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 046116 496 RSQAYDMMGLAKESLMDALTFI 517 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kAL 517 (604)
++++|..+|++++|+..+..+-
T Consensus 274 La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 274 LAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999998765443
No 117
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00019 Score=68.62 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=67.5
Q ss_pred HHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 441 LDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 441 Lel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
..+.|...+...+..++++|..+...|++++|+..+++++++.|+......+++.+|.++..+|++++|+..|+++++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33333333445788999999999999999999999999999987622235799999999999999999999999999984
Q ss_pred h
Q 046116 521 M 521 (604)
Q Consensus 521 ~ 521 (604)
+
T Consensus 103 p 103 (172)
T PRK02603 103 P 103 (172)
T ss_pred c
Confidence 3
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00013 Score=69.30 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=80.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY 500 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~ 500 (604)
.+.+|-.+.|..+-..+.+.+...+. ...+..+.+.|.++..+|+|++|+..+++|+.+.|+......+++++|.++
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSG---EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred ccccccccccccchhhhhHhccCCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 45667777788888888666665554 236888999999999999999999999999999876222345899999999
Q ss_pred HHcCCHHHHHHHHHHHHhch
Q 046116 501 DMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 501 ~~LGd~dEAL~d~~kALkl~ 520 (604)
..+|++++|+..|+++++..
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERN 102 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999983
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.00059 Score=63.52 Aligned_cols=101 Identities=15% Similarity=0.003 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..........+..++...+...+++.+.-.|+ ..........+|.+++..|++++|+..++.++...|+......+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4566667777777899999999999999999998 22336778889999999999999999999999988773223568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~k 515 (604)
.+++|.+++..|++++|+..+..
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999855
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=3.1e-05 Score=84.39 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
-.+.||.+|++.+|..||..|+.||+.-|.-.+.....++.|.+..+.+.|+|++||..++..++..|+ .++-+++
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn----~~a~~nl 315 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN----FIAALNL 315 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc----HHhhhhh
Confidence 347899999999999999999999999999777789999999999999999999999999999999997 6777889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 046116 497 SQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 497 G~a~~~LGd~dEAL~d~~kALkl 519 (604)
-.|++..|+-+.-.+.|++.+..
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcC
Confidence 99999999999999999999987
No 121
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.00098 Score=61.66 Aligned_cols=107 Identities=21% Similarity=0.127 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------KMRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
..+.+...|......++.+.++..+.+++.+... ..+.....+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4556677788888899999999999999998422 12233556777788899999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+++++.++|. +-.+|..+-.+|..+|+..+|+..|+++-+...+
T Consensus 85 ~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 85 LQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999998877543
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00026 Score=61.41 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.......|..+++.|+|++|+..|.+++...|+ ....+.++.++|.++.++|++++|+..++++++..|+ +..+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~ 112 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG---SSAA 112 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC---ChhH
Confidence 456788999999999999999999999999987 2224678999999999999999999999999999999 6544
No 123
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.70 E-value=0.00043 Score=82.13 Aligned_cols=100 Identities=10% Similarity=-0.066 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+...|..+...|+|++|++.|+++++.+|+ ++.++.-++..|...+++++|+..+++++..+|+ +...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---~~~~- 172 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-----NPDLISGMIMTQADAGRGGVVLKQATELAERDPT---VQNY- 172 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---hHHH-
Confidence 566777788999999999999999999999999 8888888899999999999999999999999999 5554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..++.++..++++.+|+..|+++++..|+
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 44566666688887899999999999554
No 124
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.70 E-value=0.00019 Score=82.67 Aligned_cols=124 Identities=24% Similarity=0.272 Sum_probs=105.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhc
Q 046116 405 EEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--KKPEAAISDTTRALSL 482 (604)
Q Consensus 405 edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--gdy~eAI~D~~rALeL 482 (604)
+++......+..++.+||.+|++++|.+|...|..++.+.|. .+-..+.++.|++.||+.+ ++|..++.+|+-|+..
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~-~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~ 122 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK-DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES 122 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc-cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence 345556667899999999999999999999999999999995 5666899999999999865 5999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116 483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV 537 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r 537 (604)
.|. ..+++++|+.+|..++.++-|++|..-..+. +|.+......+.+
T Consensus 123 ~p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~-----~p~~~~~~eif~e 169 (748)
T KOG4151|consen 123 QPR---ISKALLKRARKYEALNKLDLAVRDLRIVEKM-----DPSNVSASEIFEE 169 (748)
T ss_pred cch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcC-----CCCcchHHHHHHH
Confidence 999 9999999999999999999999997666666 4455445543333
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.00027 Score=72.73 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS 497 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG 497 (604)
.+..+.++..|+-+.+....+++....|. +..++.-.+...+..|+|..|+..+++|..++|+ +.++|.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---DWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-----cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---ChhhhhHHH
Confidence 77888899999988899888998888888 7778877899999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 498 QAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 498 ~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
.+|.++|++++|...|.+++++.+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCC
Confidence 99999999999999999999996653
No 126
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.68 E-value=0.00017 Score=70.77 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK----------PEAAISDTTRALSLSKTMSSHSKSLWRRSQA 499 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd----------y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a 499 (604)
|+.|.+.|......+|. ++..++|-|.+++.+.+ +++||+-+++||.++|+ ...|+|.+|.+
T Consensus 7 FE~ark~aea~y~~nP~-----DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-----DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-----hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence 78899999999999999 89999999999988854 56789999999999999 99999999999
Q ss_pred HHHcCC-----------HHHHHHHHHHHHhchh
Q 046116 500 YDMMGL-----------AKESLMDALTFIGSRM 521 (604)
Q Consensus 500 ~~~LGd-----------~dEAL~d~~kALkl~~ 521 (604)
|..++. |+.|...|++|....|
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 999876 5666666677766633
No 127
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00028 Score=70.60 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+.-+-++|-++.+.++++.||...++||++.|. +-.++..||.+|-++..|++|+.||++.++++|.
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-----y~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-----YEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999999999999 8899999999999999999999999999999999
No 128
>PRK11906 transcriptional regulator; Provisional
Probab=97.62 E-value=0.00073 Score=74.67 Aligned_cols=87 Identities=7% Similarity=-0.130 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 046116 427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLA 506 (604)
Q Consensus 427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~ 506 (604)
..+-.+|.+.-.+|++++|. ++.++..+|.++...++++.|+..+++|+.++|+ .+.++|..|.++...|+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~-----Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTV-----DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKI 388 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCH
Confidence 34567899999999999999 9999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhchh
Q 046116 507 KESLMDALTFIGSRM 521 (604)
Q Consensus 507 dEAL~d~~kALkl~~ 521 (604)
++|+..+++|+++.|
T Consensus 389 ~~a~~~i~~alrLsP 403 (458)
T PRK11906 389 EEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHhccCc
Confidence 999999999999954
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0007 Score=76.56 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 046116 430 IEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK 507 (604)
Q Consensus 430 yeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d 507 (604)
...|.+...+++.+ +|. .+.+|.-+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|+++
T Consensus 400 l~~a~~~~~~a~al~~~~~-----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 400 LAALSTELDNIVALPELNV-----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHhhhcccCcC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHH
Confidence 45556666666664 555 6788888899999999999999999999999986 579999999999999999
Q ss_pred HHHHHHHHHHhchhh
Q 046116 508 ESLMDALTFIGSRMK 522 (604)
Q Consensus 508 EAL~d~~kALkl~~~ 522 (604)
+|+..|++|+.+.|.
T Consensus 471 eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 471 LAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999999553
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.61 E-value=0.00058 Score=81.17 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=109.1
Q ss_pred hhccccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046116 366 YHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP 445 (604)
Q Consensus 366 y~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P 445 (604)
|-..+.+++.+...+....|-...... ...+....+..+.++..+.....+.-.|-.+++.+++..|... .++...+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 334444555555555544444433111 1223333344455666677788888888888888888877776 6666655
Q ss_pred CCcc--------------cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 046116 446 LKMR--------------KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLM 511 (604)
Q Consensus 446 ~~~~--------------~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~ 511 (604)
.+.+ ..+..++..+|.||-++|++++|+..++++|++||+ |+.++.+.|..|... +.++|+.
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh-hHHHHHH
Confidence 5110 002368889999999999999999999999999999 999999999999999 9999999
Q ss_pred HHHHHHhchhhc
Q 046116 512 DALTFIGSRMKC 523 (604)
Q Consensus 512 d~~kALkl~~~~ 523 (604)
.+.+|+....+.
T Consensus 171 m~~KAV~~~i~~ 182 (906)
T PRK14720 171 YLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHHHHhh
Confidence 999999885543
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.60 E-value=0.0034 Score=68.30 Aligned_cols=103 Identities=12% Similarity=-0.055 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------cccchHHHHHHHHHHHHHc
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--------------------------MRKERIVLYSNRAQCYLML 466 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--------------------------~~~~~a~l~~NRA~~ylkL 466 (604)
.+......+..+...|++++|.....++++..|+. ..+.++.++...|..++..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 44555566667777777777777777777643330 0011444455555555555
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 467 KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 467 gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++|++|.+.++++++++|+ ...+..++.++..+|+.++|...|++++.+
T Consensus 342 ~~~~~A~~~le~al~~~P~----~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPD----AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555555555555554 233344555555555555555555555444
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.0014 Score=77.02 Aligned_cols=102 Identities=13% Similarity=0.021 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
-.++.+...|..++.+|+|++|..+|.+++..+|+. ..-.+.-+|+.|++.|+++.|+..+.++++..|+ +.+
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~e 377 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYE 377 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---hHH
Confidence 457789999999999999999999999999999992 3677888999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHhch
Q 046116 492 SLWRRSQAYDMMG----LAKESLMDALTFIGSR 520 (604)
Q Consensus 492 A~~rrG~a~~~LG----d~dEAL~d~~kALkl~ 520 (604)
...-+|..|...+ .-+.|.....++++..
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 9999999999887 5677777777777774
No 133
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.56 E-value=0.0011 Score=61.34 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLC---PL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS------- 481 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe------- 481 (604)
.....|...++.|-|++|...|.+|++.. |. ...-.++.+|.-++.++..+|+|++++....+||.
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 34456677788999999999999999984 32 11223678999999999999999999999999984
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 482 LSKT-MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 482 LdPd-~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|+.+ ++.+..+-+.||.++..+|+.+||+..|+++-+.
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5555 2446778899999999999999999999999887
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00017 Score=60.85 Aligned_cols=61 Identities=31% Similarity=0.281 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
....+...|..+|+.|+|++|+..+++ +..+|. ....+...|.|++++|+|++|+..+.+|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-----~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-----NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-----HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 355677799999999999999999999 888888 7788888899999999999999998875
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00076 Score=77.37 Aligned_cols=105 Identities=19% Similarity=0.155 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
-....|...|..+.+.++++.|...|+..+.++|+ +...|+|.+.+|+++++-.+|-...++|++-+-+ |.+
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~ 588 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQ 588 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCe
Confidence 35678999999999999999999999999999999 9999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.+-+--.+....|.+++|+..|.+-++...+..
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999998854433
No 136
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.54 E-value=0.0022 Score=69.82 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.....+...|..+.++|+++.|...|.++.+..|+ .. .+...++..++..|++++|+..+++.++..|+ ++
T Consensus 116 ~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~ 187 (409)
T TIGR00540 116 EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-----DNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HK 187 (409)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CH
Confidence 34455677888899999999999999999998888 42 45666799999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++.-.+.++...|++++|+..+.+.++.
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999988887
No 137
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.49 E-value=0.00015 Score=51.01 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
+.+|+++|.+|..+|++++|+.++++||+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356777888888888888888888888888876
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.48 E-value=0.0035 Score=70.95 Aligned_cols=64 Identities=17% Similarity=0.044 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+++.+|+.|-.+|++++|+...++||+..|+ .++.|+.+|.++-+.|++.+|...+..|-+++.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 4577899999999999999999999999999 999999999999999999999999999999944
No 139
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0038 Score=70.13 Aligned_cols=73 Identities=25% Similarity=0.194 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
.....+.+.|-.+-+.++|++||..|++||.++|. ++..|.-.|.+|..+|+++.||+.+.+||-++|+ +.-
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-----~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~---n~~ 524 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-----DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD---NIF 524 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-----chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc---cHH
Confidence 45667899999999999999999999999999999 9999999999999999999999999999999999 754
Q ss_pred H
Q 046116 492 S 492 (604)
Q Consensus 492 A 492 (604)
+
T Consensus 525 ~ 525 (611)
T KOG1173|consen 525 I 525 (611)
T ss_pred H
Confidence 4
No 140
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.43 E-value=0.0013 Score=71.54 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH----H
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW----R 495 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~----r 495 (604)
.+..+...|+++.|...+++.++..|+ ++.++...+.+|...|+|++|+..+.+.++..+. ....+. .
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~---~~~~~~~l~~~ 230 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF---DDEEFADLEQK 230 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence 355666667777777777777777776 6666666777777777777777777777665433 222221 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+...+..+++...+..+.+..|
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 22222334444445556666666644
No 141
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.009 Score=66.83 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+-+-.+..+|..+..+|+.++|++.|+++++.... .++....++..++.||+-+.+|++|..++.+.++.+. +.+
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~----WSk 339 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK----WSK 339 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----cHH
Confidence 35778899999999999999999999999965443 6677889999999999999999999999999999654 567
Q ss_pred HHHH--HHHHHHHcCCH-------HHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 492 SLWR--RSQAYDMMGLA-------KESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 492 A~~r--rG~a~~~LGd~-------dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
++|. .|.|+..+|+. ++|...|.++-.+..+.. .+..++...+.|-.++-...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~-gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKA-GKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHHHhc
Confidence 6554 78999999999 888888888888755433 25677888887777765555
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.0043 Score=64.37 Aligned_cols=151 Identities=14% Similarity=0.023 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---
Q 046116 412 LSVFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--- 486 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--- 486 (604)
..+..+.+.|..+... |++++|++.|.+|+++... ........++.+.|.++.++|+|++|+..++++....-+.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 3578889999999998 9999999999999998432 1233457788899999999999999999999998754321
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc-CccchHHhhhhcCCchhHH
Q 046116 487 SSHSK-SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA-TWPFIHAKSKMCKPSIIEE 564 (604)
Q Consensus 487 ~~n~K-A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~-~~l~~ea~rKm~k~~~~e~ 564 (604)
+.+.+ .+++.+.|++..||+..|...+.+....+|.-. ...--..+..++.-.... ...+.++....-..+....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~---~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA---SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST---TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 11344 457888899999999999999999998865433 233344566666655553 3344444444444444333
Q ss_pred H
Q 046116 565 K 565 (604)
Q Consensus 565 ~ 565 (604)
.
T Consensus 269 w 269 (282)
T PF14938_consen 269 W 269 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0027 Score=65.54 Aligned_cols=103 Identities=15% Similarity=-0.044 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+...-..|.+--.+-.+|+--+||+...+-++..|. +..+|..+|..|+.+|+|++|.-.+.+.+-++|. ++
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-----D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---n~ 188 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-----DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---NP 188 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---cH
Confidence 334445555556666677777999999999999998 9999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGL---AKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd---~dEAL~d~~kALkl~~ 521 (604)
--+-|+|.+++-+|- +.-|.+.|.+++++++
T Consensus 189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999998875 5678999999999955
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.40 E-value=0.0013 Score=78.32 Aligned_cols=117 Identities=10% Similarity=-0.084 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---- 487 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---- 487 (604)
.....+....+.+...+++++|+...+.+++..|+ ...+|+..|..|+..+++.+|..- .++.+-+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-----~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-----SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-----ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 46778889999999999999999999999999999 899999999999999988887766 6666665510
Q ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 488 ------------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 488 ------------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
.+-.|++.+|.||.++|++++|...|+++++.+ |.|..+...++..+.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~aLNn~AY~~a 161 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHH
Confidence 033899999999999999999999999999995 444444444444333
No 145
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.34 E-value=0.0033 Score=74.28 Aligned_cols=100 Identities=19% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...|..+|-.+.+.+++..||..++.|+..+|. +..+|.-++.+|...|+|..|++.+++|..++|. +.-+-
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---s~y~~ 633 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-----DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---SKYGR 633 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCch-----hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---hHHHH
Confidence 345667899999999999999999999999999 9999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|..+.....+|+|.+|+..+.+.+....
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887643
No 146
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0023 Score=65.87 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=95.6
Q ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 046116 370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR 449 (604)
Q Consensus 370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~ 449 (604)
+.|.+..+...+++++.-+.++. -+|+.-+++.++-......-+.+....+...|+|-++++..+..|...|.
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~----lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~--- 262 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQ----LKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG--- 262 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHH----hccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc---
Confidence 44667778888888888777666 66777888877777777788899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
+..+|+.||.++...-+..+|..|+..+|+++|.
T Consensus 263 --nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 --NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred --hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999999999999998
No 147
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0049 Score=67.28 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=84.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHH--------
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTT-------- 477 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~-------- 477 (604)
.++..+...+.+..+|+.+.+.|+.++|+-.|+.|+.+.|- +..+|.-+-.||+..|++.+|..-++
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 34445567889999999999999999999999999999998 78888888888888888777655444
Q ss_pred ----------------------------HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 478 ----------------------------RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 478 ----------------------------rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
++|+++|+ +.+|-..+|..+..-|.+++++.-++++|...
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 44555666 77777777777777777777777777777763
No 148
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.27 E-value=0.0083 Score=65.27 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
...+...+....+.|+++.|...|.+|.+.+|+ .. ......+..++..|++++|+..++++++.+|+ ++.+
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-----~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~a 189 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADN-----DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEV 189 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence 344555566679999999999999999999998 43 33334589999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.-++.+|...|++++|+..+.+..+.
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 999999999999999999999888887
No 149
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.25 E-value=0.0033 Score=68.66 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C-----cccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--------K-----MRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--------~-----~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
........|...|++++|..|+-.|..||+++.. . .......+-..+..||+++++.+-|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 4455667888999999999999999999999754 1 11223445667899999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|.++|. +..-++++|.++..+.+|.+|-..+--|.=.
T Consensus 255 I~lnP~---~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 255 INLNPS---YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999998887766554
No 150
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.24 E-value=5.6e-05 Score=80.32 Aligned_cols=202 Identities=13% Similarity=-0.008 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHh----------hcCcchHHHHHHHHHhhhcChhHHhhccc-----ccchhHHHHHHHH-----hhhhcc
Q 046116 310 WQYAAIDSLLLL----------LKDPDTRYEVIDIAALFLVDLVELKSLNG-----RERVGEAITQTLL-----QDYHKV 369 (604)
Q Consensus 310 wq~~~idcll~L----------l~dr~T~y~algka~~aL~DL~eL~eLg~-----~~~lGd~i~k~L~-----~dy~~i 369 (604)
-.+.+|||---- .-+|+..|+-+-+-+.|=+|-.+...|.. ...++.+-..... .||..
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~- 190 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET- 190 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-
Confidence 457899997543 33566778877777777777666666521 1222111111111 12222
Q ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChH--HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046116 370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDE--EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK 447 (604)
Q Consensus 370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~e--dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~ 447 (604)
.-.+.+.+.++...+..+...+ |+.-..+ .++- ........+...+..|+.+++.|.|+.|+.+|+..+..+.+
T Consensus 191 -vL~LEP~~~ELkK~~a~i~Sl~-E~~I~~K-sT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~- 266 (536)
T KOG4648|consen 191 -VLALEPKNIELKKSLARINSLR-ERKIATK-STPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD- 266 (536)
T ss_pred -HHhhCcccHHHHHHHHHhcchH-hhhHHhh-cCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc-
Confidence 1134455555555555555444 2222222 1211 11223334455789999999999999999999999998877
Q ss_pred cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 448 MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 448 ~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
+..+..| +..|.+.-+|..|+.+|.+++-++|. +.+++-+++.+.--+|...|+..+++.++.+.|.+.
T Consensus 267 ----~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s---~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 267 ----SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT---PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred ----cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC---cCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 6777777 99999999999999999999999999 999999999999999999999999999999955443
No 151
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.23 E-value=0.00035 Score=50.28 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=20.2
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL 510 (604)
|++||+++|+ ++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666666 6666666666666666666654
No 152
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.011 Score=63.24 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRS 497 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG 497 (604)
.+.|..++..|-+.+|...+..+|+..|- +..|..++.+|....++..|+..+.+.++.-|. +.--+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~---~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF---DVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc---hhhhhhhhH
Confidence 45677788888888888888888887775 666667777777777777777777777777777 777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 498 QAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 498 ~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
.++..++++++|++.|+.+++..+.+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 77777777777777777777775544
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0055 Score=63.32 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.-...+-.|..+-..|+|++|++.|+..|+-+|. +.++|-..-.+.-.+|+--+||.....-++.-+. ..+|
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-----~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---D~EA 156 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-----DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---DQEA 156 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---cHHH
Confidence 3455667788888899999999999999999999 8999998888999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|..++.+|..+|+|+.|.-.+++.+=..|
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999998833
No 154
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.00074 Score=71.74 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.++.+---|.-+|-.++-+-|+.+|++.|.+--. ++.+|.|.|.|-+--++|+-++..+.+|+....+.......
T Consensus 323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 4555556677788899999999999999999887 89999999999999999999999999999876532235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
||++|.+....||+.-|...|+-||..++
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99999999999999999999999998844
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.011 Score=61.17 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..|-++|....+.|+|++|+..|.+.....|- .+....+....+.++++-++|++|+...++=+.+.|+...-.-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~--s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF--SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4789999999999999999999999999998886 34467888889999999999999999999999999993333557
Q ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGL--------AKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd--------~dEAL~d~~kALkl~~~~~ 524 (604)
+|-+|.+++..=+ ..+|+.+|+..+...|+..
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 8889998776532 5678899999999988765
No 156
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.20 E-value=0.00064 Score=51.09 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
.++..+|.+|..+|++++|+..++++++.+|+ +..+++.+|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence 46788899999999999999999999999999 8888888775
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=97.17 E-value=0.0027 Score=70.29 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCcccchHHHHHHHHHHHHHc---------CCcHHHHHHHHHHH
Q 046116 416 MLKQQGNQEFWAGY---IEEAVKKYSKAL---DLCPLKMRKERIVLYSNRAQCYLML---------KKPEAAISDTTRAL 480 (604)
Q Consensus 416 ~lk~~GN~lfk~Gd---yeeAIe~YtkAL---el~P~~~~~~~a~l~~NRA~~ylkL---------gdy~eAI~D~~rAL 480 (604)
.+..+|...+.++. .+.|+.++++|+ +++|. .+.+|.-+|.||+.. .+-.+|...+++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 55777777776664 578999999999 99999 999999999999876 23567889999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 481 SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 481 eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++||+ ++.|++.+|.++...|+++.|+..|++|+.+.|+.
T Consensus 332 eld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 332 DITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred hcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 99999 99999999999999999999999999999996654
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.17 E-value=0.0071 Score=68.92 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
---|.-.|-.+-..++|++||.+|+.|+.+.|+ +..++..+|....++++|+.....=.+-+++.|. +...|
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w 146 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASW 146 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHH
Confidence 445777888888889999999999999999999 8999999999999999999999999999999999 88899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
+..+.++...|++..|+...+...+..
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988888874
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.001 Score=72.39 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+......+-+.||.+|-.|+|+.||..-..-|++... ..+.-.-.+++|+|.||+-+|+|+.|+++|+.++.|
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 334445566777777888888888888777777766422 001112456777777888888888877777776544
No 160
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.16 E-value=0.00036 Score=50.24 Aligned_cols=34 Identities=38% Similarity=0.459 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHH
Q 046116 436 KYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAIS 474 (604)
Q Consensus 436 ~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~ 474 (604)
+|++||+++|+ ++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~-----n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPN-----NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCC-----CHHHHHHHHHHHHHCcCHHhhcC
Confidence 48999999999 99999999999999999999973
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.0044 Score=70.15 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--------PEAAISDTTRALS 481 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--------y~eAI~D~~rALe 481 (604)
.+-.+..+|..++..++ +..|+.+|.+||+++|+ ++.+|..+|.+|..... ...+.....+++.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-----~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-----FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 57778888988887765 88999999999999999 99999999998876533 3455666666666
Q ss_pred c--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 482 L--SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 482 L--dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
+ +|. .+.+|.-+|..+...|++++|...+++|+.+.
T Consensus 413 l~~~~~---~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 413 LPELNV---LPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred cccCcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 4 666 67889999999999999999999999999993
No 162
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.11 E-value=0.00097 Score=46.35 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.++.++|.+|..+|+|++|+.+++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666665
No 163
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.022 Score=56.40 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEAAISDTTRALS 481 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~eAI~D~~rALe 481 (604)
........|..+|+.|+|++|+..|++.|...|. ++....+++.+|.+++++.+ ..+|+..++..++
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~--~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN--SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999998 44567788889999877643 4589999999999
Q ss_pred cCCCCCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 482 LSKTMSSHSKS--------------LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 482 LdPd~~~n~KA--------------~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.-|+..--.+| -+..|.-|+..|.|..|+.-++.+++..|+
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 99993321222 345688899999999999999999999664
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.0026 Score=65.94 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCC---
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLML-KKPEAAISDTTRALSLSKTM--- 486 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALeLdPd~--- 486 (604)
..+..+.+.++. ++..++++|+.+|++|+++.-. .....-+.++.+.|.+|... |++++|+..|.+|+++-...
T Consensus 73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 345566655555 5555999999999999997322 11223578999999999998 99999999999999873221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+.+.+.|.++..+|+|++|+..|++..+.+.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 11356778899999999999999999999998744
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.06 E-value=0.019 Score=58.82 Aligned_cols=122 Identities=11% Similarity=-0.006 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC------------------cHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK------------------PEAAIS 474 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd------------------y~eAI~ 474 (604)
........|..+|+.++|++|+..|++.|+..|+ ++....+++.+|.++..+++ -.+|+.
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~--~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 3455779999999999999999999999999998 45567888899999866651 257899
Q ss_pred HHHHHHhcCCCCCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 475 DTTRALSLSKTMSSHSKS--------------LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 475 D~~rALeLdPd~~~n~KA--------------~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
.+++.++.-|+..--.+| -+..|.-|++.|.|.-|+.-++.+++..|+. ....+.+..+..
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-----~~~~eal~~l~~ 220 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-----QATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-----chHHHHHHHHHH
Confidence 999999999983322223 3345677999999999999999999985543 335555555444
Q ss_pred H
Q 046116 541 K 541 (604)
Q Consensus 541 K 541 (604)
.
T Consensus 221 a 221 (243)
T PRK10866 221 A 221 (243)
T ss_pred H
Confidence 3
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.0019 Score=59.56 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+++++|.+|-.+|+.++|+..|++|+....+......+++.+|.++..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 478899999999999999999999999986653335789999999999999999999999999987553
No 167
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.017 Score=63.25 Aligned_cols=105 Identities=13% Similarity=-0.032 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..|.-.|..+|..++|+.|+..-.++|+.+|. +...|...|..++.+++.++|+-.++.|..|.|. ...
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL~ 369 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY---RLE 369 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHHHHHHHHhcchh---hHH
Confidence 46778888999999999999999999999999999 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.|-.+-.+|...|++.||...-+.+++..+++.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 999999999999999999999999998876654
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.0043 Score=64.41 Aligned_cols=70 Identities=7% Similarity=-0.065 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
...+...|..++..|+|++|+..|.+++...|+ ....+.++.++|.+|..+|++++|+..++++++..|+
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999999887 4557889999999999999999999999999999999
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.024 Score=56.60 Aligned_cols=104 Identities=14% Similarity=0.052 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALD-LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALe-l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+.......||.+...|+|.||...|.+++. +... ++..+..+|++.+.++++..|...++...+-+|.. ..+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-r~pd 161 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-RSPD 161 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-CCCC
Confidence 456677899999999999999999999997 3445 68888999999999999999999999999999873 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
...-.|.+|..+|++.+|...|+.++...|+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 5666799999999999999999999999553
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.81 E-value=0.023 Score=62.47 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
.+.-+..++..+.++++|+.|+...++|+++.|+ ....|+.+|.||.++|+|+.|+..++.+--
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-----~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-----EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 4788899999999999999999999999999999 899999999999999999999987775533
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.81 E-value=0.0029 Score=44.38 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
+..+..+|..++..|+|++|+..|++||+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999999997
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.70 E-value=0.015 Score=65.87 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.+.-.+..+-..|+|++|++..++||+..|. .+.+|..+|.+|-+.|++.+|....+.|-.+|+. .--.--.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHHH
Confidence 4556677888899999999999999999999 8999999999999999999999999999999998 5555556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl 519 (604)
-++.+...|+.++|...+..+.+.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCC
Confidence 688888999999999887777665
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.69 E-value=0.03 Score=49.75 Aligned_cols=92 Identities=24% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHH
Q 046116 423 QEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYD 501 (604)
Q Consensus 423 ~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~ 501 (604)
.++..|+++.|+..|.+++...|. .......+..++..+...+++..|+..+.+++...|. . ..++..++..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE--LNELAEALLALGALLEALGRYEEALELLEKALKLNPD---DDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc---cchHHHHHhhHHHH
Confidence 444555555555555555444431 0013444444444444555555555555555555444 2 444555555555
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 046116 502 MMGLAKESLMDALTFIGS 519 (604)
Q Consensus 502 ~LGd~dEAL~d~~kALkl 519 (604)
..+++++|+..+..+++.
T Consensus 214 ~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 214 KLGKYEEALEYYEKALEL 231 (291)
T ss_pred HcccHHHHHHHHHHHHhh
Confidence 555555555555555554
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=96.67 E-value=0.0063 Score=59.17 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
..+-+...|-.+..+|+|++|+..|..|..++++ ++...+..|.||+.+|+...|...+..|+. +|. ...
T Consensus 70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-----dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~----~~~ 139 (165)
T PRK15331 70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-----DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE----DES 139 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-----CCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc----hHH
Confidence 3567899999999999999999999999999998 788888899999999999999999999999 455 345
Q ss_pred HHHHHHHHHH
Q 046116 493 LWRRSQAYDM 502 (604)
Q Consensus 493 ~~rrG~a~~~ 502 (604)
+..++++++.
T Consensus 140 l~~~A~~~L~ 149 (165)
T PRK15331 140 LRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHH
Confidence 6666776654
No 175
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.66 E-value=0.0043 Score=43.02 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
++.+...|..+++.|+|++|++.|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999999997
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.65 E-value=0.0094 Score=62.69 Aligned_cols=84 Identities=18% Similarity=0.077 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 046116 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK 507 (604)
Q Consensus 428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d 507 (604)
.++.+|...|.+..+..|. .+.+++..|.|++.+|+|++|.+.+.+|+..+|+ ++.++.+++.+...+|+..
T Consensus 181 e~~~~A~y~f~El~~~~~~-----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGS-----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp TCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TC
T ss_pred hhHHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCCh
Confidence 3699999999998888777 7899999999999999999999999999999999 9999999999999999996
Q ss_pred HHHHHHHHHHhc
Q 046116 508 ESLMDALTFIGS 519 (604)
Q Consensus 508 EAL~d~~kALkl 519 (604)
++...|..-++.
T Consensus 253 ~~~~~~l~qL~~ 264 (290)
T PF04733_consen 253 EAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCHH
T ss_pred hHHHHHHHHHHH
Confidence 666655555543
No 177
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.65 E-value=0.1 Score=60.12 Aligned_cols=166 Identities=16% Similarity=0.020 Sum_probs=122.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 404 DEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 404 ~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
++.++.-+.-..-|...|..+-+.++.+.|-+.|+..+..+|. ...+|..++..-.+.|+.-.|-..++++.--+
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-----~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-----SIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 3444555556778899999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhcCCchhH
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMCKPSIIE 563 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~k~~~~e 563 (604)
|+ +...|...-+.-+..|+.++|.....+||..||++- +.=.-+-.+...-++.-.+.++.+|-..+....
T Consensus 750 Pk---~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg------~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 750 PK---NALLWLESIRMELRAGNKEQAELLMAKALQECPSSG------LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred CC---cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc------hhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 99 998898888999999999999999999999987543 111111111122222233444555544444443
Q ss_pred HHHHHHHHhHHHHHHHHHhc
Q 046116 564 EKLVEKTCRRRKLEKARRKK 583 (604)
Q Consensus 564 ~~lvek~~~~~k~ekArRk~ 583 (604)
...-..--+..|++|++...
T Consensus 821 laia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344566677766543
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.0073 Score=65.99 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---MSS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~~~ 488 (604)
.-.++-+.||.+.-.|+|+.|+++|.+++.+.-. ..+...+..-+-+|..|.-+.+|.+||.+..+-|.+... ...
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457789999999999999999999998876422 112334555556899999999999999999998776432 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
...|+|-+|.+|-.+|..+.|+......+++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888887763
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.64 E-value=0.012 Score=67.20 Aligned_cols=106 Identities=19% Similarity=-0.051 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..++..+.+-..|-.+...|+-++|..+-..++..++. ..++|.-.|..+..-++|++||..|+.|+.++|+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--- 107 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--- 107 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---
Confidence 34457888999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|...+..++....++|+++.....-.+-+.+++.
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9999999999999999999888877777777554
No 180
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.0082 Score=56.82 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.|.+...-|+.+.|++-+.++|.+-|. ++.+|.+|++++...|+.++|+.|+.+++++
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 466777889999999999999999999 9999999999999999999999999999999
No 181
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.51 E-value=0.017 Score=57.06 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHH
Q 046116 413 SVFMLKQQGNQEFWA----------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEA 471 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~----------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~e 471 (604)
.++.+.+-|.++... .-+++||..|.+||.++|+ ...++.+.|.+|..++. |++
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 455555555554322 3478999999999999999 89999999999998864 888
Q ss_pred HHHHHHHHHhcCCC
Q 046116 472 AISDTTRALSLSKT 485 (604)
Q Consensus 472 AI~D~~rALeLdPd 485 (604)
|...+.+|...+|+
T Consensus 99 A~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 99 ATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999999
No 182
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.49 E-value=0.036 Score=65.91 Aligned_cols=199 Identities=14% Similarity=-0.000 Sum_probs=137.9
Q ss_pred HHHHHHHhhcCCchhh--HHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhc----ccccchhHHHHHHHHhhhhcc
Q 046116 296 VIESVCNVSRSSDDWQ--YAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSL----NGRERVGEAITQTLLQDYHKV 369 (604)
Q Consensus 296 ~~~~lc~~~rssd~wq--~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eL----g~~~~lGd~i~k~L~~dy~~i 369 (604)
+.-+|-.+=|.++|.. .-.+||--.|-...++--.++-..-...+++.+..++ +.+...+....+..+++..+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 3445556667777633 3356666666665666556666666677777777766 333334444444444333332
Q ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 046116 370 KYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR 449 (604)
Q Consensus 370 k~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~ 449 (604)
..+ +...++..+.. .+...++....|...|.+|...|.|..|+..|++|..++|.
T Consensus 574 ea~-------n~h~aV~~fQs---------------ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~--- 628 (1238)
T KOG1127|consen 574 EAH-------NLHGAVCEFQS---------------ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL--- 628 (1238)
T ss_pred Ccc-------chhhHHHHHHH---------------HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---
Confidence 222 22222222111 12344557889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..-..+..|.....+|+|.+|++.+...+.-... .+..++.+.|.+..++..|-+..|...++++++.+.
T Consensus 629 --s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 629 --SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6777777899999999999999999998865433 233678899999999999999999999888888743
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.35 E-value=0.0082 Score=45.04 Aligned_cols=42 Identities=21% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ 461 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~ 461 (604)
..+...|..+...|++++|+..|+++|+.+|+ ++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-----DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----CHHHHHHhhh
Confidence 35778899999999999999999999999999 8999988775
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.045 Score=57.65 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC---
Q 046116 429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL--- 505 (604)
Q Consensus 429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd--- 505 (604)
+.+..+.....-|..+|+ ++.-|..+|.+|+.+|+++.|...|.+|++|.|+ |+..+.-.|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 137 EMEALIARLETHLQQNPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcc
Confidence 356677778888889999 9999999999999999999999999999999999 99999999999988754
Q ss_pred HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 506 AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 506 ~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
..++...+++++++ ||.+.....++..-.
T Consensus 209 ta~a~~ll~~al~~-----D~~~iral~lLA~~a 237 (287)
T COG4235 209 TAKARALLRQALAL-----DPANIRALSLLAFAA 237 (287)
T ss_pred cHHHHHHHHHHHhc-----CCccHHHHHHHHHHH
Confidence 47888899999999 555655665555443
No 185
>PRK10941 hypothetical protein; Provisional
Probab=96.32 E-value=0.028 Score=58.74 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=64.7
Q ss_pred cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 448 MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 448 ~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+........|+=.+|++.++++.|+...++.+.++|+ .+.-+--||.+|.++|.+..|+.|++.+++.||+
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34556678888899999999999999999999999999 8877778999999999999999999999999775
No 186
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.25 E-value=0.0065 Score=42.37 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+|.++|.+|..+|++++|+..++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555666666666666666666666666654
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.088 Score=59.86 Aligned_cols=101 Identities=15% Similarity=0.019 Sum_probs=79.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..++....++-.--.+.+.++|++|+ +.|+..+- .......++.+|.|++++++.++|+.+++ -+++.
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~--- 108 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRL--- 108 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHh---ccccc---
Confidence 34566777777888888888888888 34555542 11134455789999999999999999999 56666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+.+.-+|+++|.+|+|++|+..|+..++...
T Consensus 109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 668899999999999999999999999988843
No 188
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.24 E-value=0.075 Score=61.09 Aligned_cols=99 Identities=16% Similarity=-0.020 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
|...-...|...+|+.|-..+.+|-...|. ..+|+.-+..-.-+++.++|+..++++|+.-|+ +.|.|..+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgT------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lml 691 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGT------ERVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLML 691 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCc------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHH
Confidence 333444455666666666666666666665 567777777778889999999999999999999 99999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 497 SQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 497 G~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
|+++..+++.+.|...|...++.||+..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 9999999999999999999999988644
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.20 E-value=0.11 Score=46.17 Aligned_cols=109 Identities=20% Similarity=0.052 Sum_probs=88.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQ-CYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~-~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
........+...|......+++..|+..+.+++...+. .......... ++...|+++.|+..+.+++..+|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD-----PDLAEALLALGALYELGDYEEALELYEKALELDPELN 164 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 34556677888899999999999999999999998887 3444444555 89999999999999999988777101
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.....++.++..+...+++++|+..+.++++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 17788888888889999999999999999999443
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.17 E-value=0.018 Score=58.72 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=93.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+...++.+..+.-.|.-+...|+|+.|.+.|+..++++|. +--++.|||..+.--|+|.-|..|+.+--+-||+
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-----y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-----chHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 34556778999999999999999999999999999999999 8889999999999999999999999887776665
Q ss_pred CCC-------------------------------------------------------------------CHHHHHHHHH
Q 046116 486 MSS-------------------------------------------------------------------HSKSLWRRSQ 498 (604)
Q Consensus 486 ~~~-------------------------------------------------------------------n~KA~~rrG~ 498 (604)
.+- -+++||.+|+
T Consensus 166 DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 166 DPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred ChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 210 1335888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 046116 499 AYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALkl 519 (604)
-+..+|+.++|..-|+-++..
T Consensus 246 ~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhccccHHHHHHHHHHHHHH
Confidence 999999999999998888776
No 191
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.16 E-value=0.048 Score=63.39 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
|...+....+.++-++|..+..+|-.++|. .+..|+.+|.++...|++.+|...+..|+.+||+ ++.+..-+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Al 724 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPL-----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTAL 724 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchh-----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHH
Confidence 345556666777788999999999999999 8999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 497 SQAYDMMGLAKESLM--DALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 497 G~a~~~LGd~dEAL~--d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
|.++...|+..-|.. -+..++++ +|.+.+.=+++-.+.+++-.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~-----dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRL-----DPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccc
Confidence 999999999888877 88999999 55666677777666665443
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.14 Score=54.16 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHH---------------
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR--------------- 478 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r--------------- 478 (604)
.+....++..+...|++.+|...+..++...|. +..+...+|.||+..|+++.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a 208 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA 208 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667788899999999999999999999999 788888899999999999665544332
Q ss_pred -------------------HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 479 -------------------ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 479 -------------------ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
.+.-||+ +..+-+.+|..+...|+.++|++.+-..++.+...+ +......+-.++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~---d~~~Rk~lle~f 282 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE---DGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---CcHHHHHHHHHH
Confidence 2234788 999999999999999999999999998888844333 334444444433
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.099 Score=59.46 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------------
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-------------- 483 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-------------- 483 (604)
.+++...|+.++.++|+..++ -+++. ...+..-+|++.+++|+|++|+..|...++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---ccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 567777777777777777777 33333 34566667777777777777777776664332
Q ss_pred -------------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 484 -------------KTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 484 -------------Pd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|.. ......+|+.|.++...|+|.+|++.+++++++|..
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE 207 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221 125678999999999999999999999999777544
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.85 E-value=0.072 Score=50.76 Aligned_cols=71 Identities=17% Similarity=-0.034 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+.-+++.|...++.|+|.+|+..++....--|.+.--..|.+.++-+|+..|++++|+..+++++++.|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 57788889999999999999999999999999886667899999999999999999999999999999654
No 195
>PLN03077 Protein ECB2; Provisional
Probab=95.61 E-value=0.82 Score=54.56 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+.-....+.+.|++++|.+.+++. .+.|+ +..|..+-.++..-++.+.|...++++++++|+ +...|
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~~~y 694 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD------PAVWGALLNACRIHRHVELGELAAQHIFELDPN---SVGYY 694 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchH
Confidence 567888899999999999999999874 45665 667777766777889999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..++.+|...|++++|.+..+..-+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999988776554
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.03 Score=59.29 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCC-
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL----SKTM- 486 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL----dPd~- 486 (604)
..+..+.+.|-.+|+.|+|++|++.|+.|++...- .+.+-+|.|.|++..++|+.|++...+.++- .|.-
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCC-----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 35788899999999999999999999999999887 7888899999999999999999998887753 3430
Q ss_pred --------------C-------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 487 --------------S-------SHSKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 487 --------------~-------~n~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
+ .-.+|+.-.+-++++.|+++.|.+.+
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 0 03467778889999999998877654
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.57 E-value=0.12 Score=61.30 Aligned_cols=108 Identities=16% Similarity=0.016 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CC--CH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SS--HS 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~--n~ 490 (604)
.......|..++..|++++|...+.++++..|..........+.++|.++...|++++|...+.+++.+.... .. ..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3344457889999999999999999999976652222234567889999999999999999999999874431 00 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.++..+|.+++..|++++|...+++++....
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999998744
No 198
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.56 E-value=0.29 Score=58.06 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM---RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--SS 488 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~---~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--~~ 488 (604)
+..+...|..++..|++++|...+.+++++..... ......++.++|.++...|++++|...+.+++.+.... ..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 44667889999999999999999999999743210 01134557788999999999999999999999874321 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...++..+|.++...|++++|...+.++...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777999999999999999999999876
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.54 E-value=0.28 Score=53.61 Aligned_cols=97 Identities=20% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CcccchHHHHHHHHHHHHHcCCcHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPL--------------------------KMRKERIVLYSNRAQCYLMLKKPEAA 472 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~--------------------------~~~~~~a~l~~NRA~~ylkLgdy~eA 472 (604)
..+..+...|++++|.+...+++...-+ ...++++.+++.+|..+++.+.|.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 3444555666666666666666543111 12233789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 473 ISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 473 I~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
-..++.|++..|+ ...+.-+|.++.++|+..+|-..+++++-.
T Consensus 348 ~~~leaAl~~~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 348 SEALEAALKLRPS----ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhcCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999987 677888999999999999999999999955
No 200
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.47 E-value=0.15 Score=53.73 Aligned_cols=97 Identities=10% Similarity=-0.097 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH--cC--CcHHHHHHHHHHHhcCCCCCCCH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM--LK--KPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk--Lg--dy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..--.-..+.+.++++.|...+...-+.+.+ .+..++|.++.. .| ++.+|...++...+..|. .+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~ 201 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDED-------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TP 201 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CH
Confidence 34445566888999999999999999888877 455556665554 45 699999999998777677 89
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+..+|.++..+|+|++|...+.++++.++
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998743
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.087 Score=54.89 Aligned_cols=67 Identities=7% Similarity=-0.085 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 456 YSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 456 ~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+|-|.-+++.|+|.+|..-+..=++.-|+..--+.|+|-+|++++.+|+|++|...|..+++-.|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 7888999999999999999999999999996656789999999999999999999999999998553
No 202
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.36 E-value=0.032 Score=38.79 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++|+.+|.+|..+|++++|+..|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6899999999999999999999999999955
No 203
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.27 E-value=0.024 Score=36.32 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+.++|.++..++++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666654
No 204
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.23 Score=53.40 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+.-|-.-|.-|++-++|..|+..|++.|+-.-.. ..+.-.|.+||-|.+.+|+|..|+.|+.+++++.|.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~ 151 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT 151 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 366777777999999999999999999999876442 347778999999999999999999999999999543
No 205
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.055 Score=58.43 Aligned_cols=86 Identities=16% Similarity=-0.022 Sum_probs=60.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L 503 (604)
+..+.||+.||....-.+..+.. . ...+-.-.|.||+.+|+|++|+..++-+..-+.. +.+...++|-|++-+
T Consensus 32 fls~rDytGAislLefk~~~~~E--E--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDRE--E--EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFYL 104 (557)
T ss_pred HHhcccchhHHHHHHHhhccchh--h--hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHHH
Confidence 34566788888887777765543 1 2233344578888888888888888887775555 677788888888888
Q ss_pred CCHHHHHHHHHHH
Q 046116 504 GLAKESLMDALTF 516 (604)
Q Consensus 504 Gd~dEAL~d~~kA 516 (604)
|.|.||...-.+|
T Consensus 105 g~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 105 GQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHhhC
Confidence 8888887665544
No 206
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.98 Score=52.23 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
..+.+.+...|+..+|..+++.|...+..-|. +.....+.+..+++-||+++.+.+.|.+.+.+|=+.||. ++-.-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHH
Confidence 45789999999999999999999999998776 344456888999999999999999999999999999999 88777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
+...++...-|.-++|+....+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 778888899999999999888777653
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.09 E-value=1.4 Score=44.44 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...++..|..+++.+|....++..+..|. .+..+..+.+ |.+|..+|++.+|.+.++.++..-|+ +.+
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~Ll~--aR~laa~g~~a~Aesafe~a~~~ypg----~~a 195 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHLLF--ARTLAAQGKYADAESAFEVAISYYPG----PQA 195 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCchHHH--HHHHHhcCCchhHHHHHHHHHHhCCC----HHH
Confidence 3556788899999999999999999999999987 3333444444 67889999999999999999999998 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..+-+.-+.++|+.++|...+....+.
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 777799999999999998887776665
No 208
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.98 E-value=0.019 Score=63.67 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+.-+-+++.++++.++|..|+....+||+++|. ...+|..||.+.+++++|.+|..++.....+.|+ .
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-----~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn---d 105 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-----YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPN---D 105 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-----hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcC---c
Confidence 3345666778888999999999999999999999999 9999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHH
Q 046116 490 SKSLWRRSQAYD 501 (604)
Q Consensus 490 ~KA~~rrG~a~~ 501 (604)
.++.-....|-.
T Consensus 106 ~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 106 PDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHH
Confidence 766555544443
No 209
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.86 E-value=0.013 Score=62.71 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=61.4
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 464 LMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 464 lkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
+..|+++.||..++.||.++|. ....|-.|+.++.++++...|+.||..++++.++.. +.-+...+..+++..--
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhchH
Confidence 3457799999999999999999 999999999999999999999999999999966544 33445555555544433
Q ss_pred h
Q 046116 544 N 544 (604)
Q Consensus 544 ~ 544 (604)
.
T Consensus 200 ~ 200 (377)
T KOG1308|consen 200 E 200 (377)
T ss_pred H
Confidence 3
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.85 E-value=0.039 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|+|++|.++..+|++++|+..|+++++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 566777777777777777777777766644
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.79 E-value=0.11 Score=41.38 Aligned_cols=40 Identities=13% Similarity=-0.083 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
..++.+|..+.++|+|++|...++.+|+++|+ |..|.--.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~---N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD---NRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---cHHHHHHH
Confidence 35677899999999999999999999999999 87765433
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.77 E-value=0.25 Score=45.61 Aligned_cols=63 Identities=21% Similarity=0.140 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
....+...+..+...|++++|+..+.+++..+|. +-.+|..+-.+|..+|++.+|+..|.+..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY-----DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567778888899999999999999999999999 89999999999999999999999998874
No 213
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.75 E-value=0.26 Score=57.42 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+.-....+.+.|++++|.+.+.+. ...|+ ...|..+..++...|+++.|...+++.++++|+ +...|.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~---~~~~y~ 532 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA-PFKPT------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE---KLNNYV 532 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---CCcchH
Confidence 45666778888999999999998764 34454 677888999999999999999999999999999 888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++.+|...|++++|.+.++...+.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999887765
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.74 E-value=3.5 Score=51.05 Aligned_cols=95 Identities=9% Similarity=-0.095 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCCCH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTMSSHS 490 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~~~n~ 490 (604)
..+....+.+.+.|++++|++.|.+..+. .|+ ...|+.+...|.+.|++++|+..+++..+. .| +.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P----d~ 754 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP----NT 754 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----CH
Confidence 34555556666667777777777666543 343 556666667777777777777777665543 33 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..|..+-.++...|++++|...+...++.
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 56666666677777777777777666665
No 215
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.73 E-value=0.68 Score=45.37 Aligned_cols=106 Identities=19% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-CH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-HS 490 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-n~ 490 (604)
+.-..+.+.|+.+.+.|++++|++.|.++.+.+.. .......+.+.-.+.+..++|..+.....+|-.+-....+ ..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 34578889999999999999999999999998765 3446778888899999999999999999998776433110 11
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 --KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 --KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.-.-.|..+...++|.+|-..|..++.-
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 12222356666677777777777666544
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.72 E-value=0.13 Score=58.70 Aligned_cols=110 Identities=17% Similarity=0.063 Sum_probs=93.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAY 500 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~ 500 (604)
|...-..|+-..|+.+...|+...|.+ .-+-..|+|+..++-|-..+|-..+.++|.++.. .+-.+|-.|.++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~ 686 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAY 686 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhH
Confidence 333446789999999999999999984 5566788999999999999999999999999977 778899999999
Q ss_pred HHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 501 DMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 501 ~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
..+.+.+.|++.|+.|+++ ++++..++..+...-.++
T Consensus 687 l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKL-----TTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHhh
Confidence 9999999999999999999 556666777766655543
No 217
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.70 E-value=0.17 Score=43.72 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
.+....++|..+|.+.+.++|+..++++++..++ .+....++-.++.+|...|+|.++++.+-+-+++.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999887 34577788888999999999999999988877653
No 218
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=0.26 Score=49.51 Aligned_cols=99 Identities=16% Similarity=0.055 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH-
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS- 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA- 492 (604)
.......+..++..|++++|+...+.++....+ ..+.+.+-.++|.+.+.+|.+++|+..++..-. + ...+
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~----~w~~~ 160 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKD--ENLKALAALRLARVQLQQKKADAALKTLDTIKE--E----SWAAI 160 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--c----cHHHH
Confidence 445667888999999999999999999987655 445677788889999999999999988765432 2 2233
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 493 -LWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 493 -~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
--.+|-++...|+-++|+..|.++++..
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5568999999999999999999999983
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.61 E-value=0.12 Score=56.15 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC------
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS------ 487 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~------ 487 (604)
......|++....+.|+.+++.|.+|+.+.-. ....+...++.-++..|-.+.|+++|+-...+|.++-.+..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 45666899999999999999999999998433 12234456788899999999999999999999999876521
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 -SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 -~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
-+.-++|+++.++..+|+..+|.+.++++.++-.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 1345789999999999999999999999988733
No 220
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.55 E-value=0.12 Score=55.13 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+.+....+.+....+.|+.+.|...|..|+.+.|. ++.++...++....-++.-+|=..|.+||.++|. |.+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~-----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~---nse 185 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT-----NPQILIEMGQFREMHNEIVEADQCYVKALTISPG---NSE 185 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC---chH
Confidence 34556666777888999999999999999999999 9999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHH
Q 046116 492 SLWRRSQAYD 501 (604)
Q Consensus 492 A~~rrG~a~~ 501 (604)
|+.+|+...-
T Consensus 186 ALvnR~RT~p 195 (472)
T KOG3824|consen 186 ALVNRARTTP 195 (472)
T ss_pred HHhhhhccch
Confidence 9999987543
No 221
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.034 Score=57.28 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
-+.+++.-.+|..||+.|.+||.++|. .+.-|-+|+.||+++.+++....|+++++.+.++.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 367778888999999999999999999 88888889999999999999999999999996653
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.17 Score=53.11 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
.....++.+-.+.-+++|.+|...|++.+..+|. ++.+-+|.|.|.+-+|+..+|++..+.++..+|..
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4556667777777777777777777777777777 77777777777777777777777777777777773
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.42 E-value=0.17 Score=55.00 Aligned_cols=75 Identities=15% Similarity=-0.013 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKH 525 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d 525 (604)
....+|.|++..+.++.+|.+++.+++..+.+.... ..-..++.-+|.++..++-++.+++.|+.|++.-.++.|
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 356789999999999999999999999999886441 234567888999999999999999999999999655444
No 224
>PRK10941 hypothetical protein; Provisional
Probab=94.26 E-value=0.45 Score=49.89 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
..-+.+.-..+.+.++|+.|+.+....+.+.|+ ++.-+--||.+|.++|.+..|+.|++.-++..|+ .+.+-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-----dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---dp~a~ 252 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE-----DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---DPISE 252 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---chhHH
Confidence 445666677889999999999999999999999 8999999999999999999999999999999999 66665
Q ss_pred HHHHHH
Q 046116 494 WRRSQA 499 (604)
Q Consensus 494 ~rrG~a 499 (604)
.-+.++
T Consensus 253 ~ik~ql 258 (269)
T PRK10941 253 MIRAQI 258 (269)
T ss_pred HHHHHH
Confidence 544443
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.2 Score=52.47 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
..-....|...++.||.+.|-..++..-..... ..-......+.|.+.+|+-.++|.+|...+++.+..||. ++.+
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~---~~~a 288 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR---NAVA 288 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC---chhh
Confidence 334455666667777766666665532211100 001125667888888899999999999999999999999 8889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
-.+.|.|+..+|+..+|++..+.++...|..
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999886653
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.18 E-value=0.26 Score=51.20 Aligned_cols=73 Identities=16% Similarity=-0.079 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.+.-+++-|...+.-|+|++|+..++.+....|.++-..++.+.++.++++-+++++|+....+++++.|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 5788899999999999999999999999999998655689999999999999999999999999999977543
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.10 E-value=0.096 Score=37.73 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALD 442 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALe 442 (604)
+.+.|+.+.+.|+|++|++.|.++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 228
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.08 E-value=0.076 Score=39.21 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 129 HFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 129 ~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
+....-+++|+||+|+.||+ --.=.=|+.|+.||++|++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 44556789999999999999 4455558899999999874
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.94 E-value=0.1 Score=37.52 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
||.++|.+|..+|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555666666666666666666665544
No 230
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.90 E-value=0.32 Score=44.57 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=72.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCCCCC
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-----------PEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-----------y~eAI~D~~rALeLdPd~~~ 488 (604)
++..+|.+||+-+|++.....|...++. .....++.--|.++.++.. .-.|++.+.++..+.|+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~--~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~--- 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED--ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD--- 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC--CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh---
Confidence 4678999999999999999999998872 1122666666777766542 44589999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+..+|.+|+=+-..-.|++++...+++|..
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777777666666677777777777665
No 231
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.69 E-value=0.25 Score=42.73 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHH
Q 046116 80 EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVA 159 (604)
Q Consensus 80 ~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~ 159 (604)
||.+.|++.-...++.++ |..+-.++...+++.+-+.++-....++.|+||+|+++|.-. ..-=++.|
T Consensus 2 ~~~~~~~i~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a 69 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAA 69 (120)
T ss_pred hHHHcCChHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHH
Confidence 456677777777776543 357778999999999998888888889999999999999975 45556789
Q ss_pred HHHhhhhhhcccchHHHHhhHHHHHHHHHHHH
Q 046116 160 VRALGHLASHDKTFEAVALYEVEIIELAKNIA 191 (604)
Q Consensus 160 ~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~ 191 (604)
+.+|+.|+....+-..+. +...+++.-+++-
T Consensus 70 ~~~L~~l~~~~~~~~~~~-~~~g~l~~l~~~l 100 (120)
T cd00020 70 LWALRNLAAGPEDNKLIV-LEAGGVPKLVNLL 100 (120)
T ss_pred HHHHHHHccCcHHHHHHH-HHCCChHHHHHHH
Confidence 999999998765433332 1223444444443
No 232
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.3 Score=52.04 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=69.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L 503 (604)
+.+..+|+.||++.+--.+..|. +-..++.+|.||+...+|..|-..+.+.-.+.|. ..+-.+.-++.+++.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~-----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~---~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR-----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE---LEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH---HHHHHHHHHHHHHHh
Confidence 45667888888888888888887 6778888899999999999999999988888888 777777778888888
Q ss_pred CCHHHHHHHHHH
Q 046116 504 GLAKESLMDALT 515 (604)
Q Consensus 504 Gd~dEAL~d~~k 515 (604)
+.+.+|+.....
T Consensus 92 ~i~ADALrV~~~ 103 (459)
T KOG4340|consen 92 CIYADALRVAFL 103 (459)
T ss_pred cccHHHHHHHHH
Confidence 888888776443
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.7 Score=50.30 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
..+.....+...|..-.|++||+.|++.|.-+|+ ...+-.++|.||.++.-|+-+-+..+--|+--|+ .+-|
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-----y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA 221 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-----YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIA 221 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-----hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHH
Confidence 3455566677778888999999999999999999 8999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHcC
Q 046116 493 LWRRSQAYDMMG 504 (604)
Q Consensus 493 ~~rrG~a~~~LG 504 (604)
..-++-.++.+=
T Consensus 222 ~NLkacn~fRl~ 233 (557)
T KOG3785|consen 222 KNLKACNLFRLI 233 (557)
T ss_pred HHHHHHHHhhhh
Confidence 777777776653
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.17 E-value=0.14 Score=34.99 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
+++++|.||.++|++++|+..++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556667777777777777777777766665
No 235
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.11 E-value=0.12 Score=53.07 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
..+++.++++.|.+.|.+|+++.|. ...-|+..+....+.|+++.|..-+++.+++||+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~-----w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPE-----WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCch-----hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3467889999999999999999999 9999999999999999999999999999999998
No 236
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.08 E-value=0.14 Score=32.53 Aligned_cols=32 Identities=38% Similarity=0.414 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
..+...|..++..|++++|+..|++++++.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35678899999999999999999999999885
No 237
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.05 E-value=1.2 Score=54.99 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCCCHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTMSSHSK 491 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~~~n~K 491 (604)
...+......+.+.|++++|.+.|.+..+..... +...|+.+...|.+.|++++|+..+++..+. .|+ ..
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----~~ 650 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG----TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EV 650 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HH
Confidence 3455556667777888888888888777764221 4677777778888888888888888877764 343 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.|..+..++...|++++|+..+.+..+.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 7777778888888888888888887765
No 238
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.7 Score=42.56 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 046116 427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLA 506 (604)
Q Consensus 427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~ 506 (604)
.+++.+|.-.|.+.-+..|. .+.+..-.|.|++.+++|++|......||.-+++ .+..+-++-.+-..+|.-
T Consensus 186 gek~qdAfyifeE~s~k~~~-----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPP-----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcccCC-----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCCC
Confidence 45799999999999996665 5899999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 046116 507 KESLMDALTFIGS 519 (604)
Q Consensus 507 dEAL~d~~kALkl 519 (604)
.++...+..-++.
T Consensus 258 ~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 258 AEVTERNLSQLKL 270 (299)
T ss_pred hHHHHHHHHHHHh
Confidence 9999988877776
No 239
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.78 E-value=0.72 Score=53.74 Aligned_cols=94 Identities=14% Similarity=-0.037 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.+......+.+.|++++|.+.+...++.... .+...++.+...|.+.|++++|...+++..+ | +..+|..
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~----d~~t~n~ 396 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K----NLISWNA 396 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C----CeeeHHH
Confidence 3444445555555555555555555554311 1456666677777777777777777776543 2 4567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..+|...|+.++|++.|++..+.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999988764
No 240
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.56 E-value=1.4 Score=44.66 Aligned_cols=96 Identities=20% Similarity=0.073 Sum_probs=71.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHHHcCCcH-------HHHHHHHHHHhcCCC---CCCCHH
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYLMLKKPE-------AAISDTTRALSLSKT---MSSHSK 491 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~ylkLgdy~-------eAI~D~~rALeLdPd---~~~n~K 491 (604)
+-....+++|++.|.-||-..-. ......+.++...|-+|..+|+-+ .|+..+.+|++-... +.....
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33455789999999999875211 012246788888999999999944 466666666654433 122467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..|-+|..++.+|++++|+..|.+.+..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 8999999999999999999999999998
No 241
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.54 E-value=1 Score=39.49 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 434 VKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 434 Ie~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
+....++++.+|+ +....+.+|..++..|++++|++-+-.+++-+++.. ...+.-.+-.++..+|.-+.-...|
T Consensus 8 ~~al~~~~a~~P~-----D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 8 IAALEAALAANPD-----DLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCCCChHHHHH
Confidence 4445555666666 566666666666666666666666666666655510 1334444444455555544444444
Q ss_pred HH
Q 046116 514 LT 515 (604)
Q Consensus 514 ~k 515 (604)
++
T Consensus 82 RR 83 (90)
T PF14561_consen 82 RR 83 (90)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 242
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.44 E-value=0.49 Score=41.28 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCccc----chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPLKMRK----ERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~~~~~----~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+.|||.+|++.+.+..+....+... .......|+|..+...|++++|+..+++|+++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667777777777776664431111 12334444555555555555555555555544
No 243
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.79 E-value=4.5 Score=44.53 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+.--+...-+.||++.|=.+..+|-+..++. ....+..|+...+..|++..|....+++++..|. ++..
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~v 189 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEV 189 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHH
Confidence 34445555666667777777777777777774431 3555666788888888888888888888888888 8888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+--..++|...|++.+.+....+.-|.
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 877888888888888777665555444
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=1.2 Score=48.22 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
+.....++---..+|-.|+...-...+.+.|.. +|+ -+...-++-..|.++...|-|++|.+.+++|+++||. .
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d--lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~---D 208 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD--LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF---D 208 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC--CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc---c
Confidence 334556666677778888887777777777776 555 1223555666789999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMD 512 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d 512 (604)
.-|..-.+.++.+.|++.|+.+.
T Consensus 209 ~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 209 CWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hHHHHHHHHHHHhcchhhhHHHH
Confidence 66666666666666666666544
No 245
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.51 E-value=1.4 Score=38.70 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 471 AAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 471 eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+..++++++.+|+ +..+.|.+|..+...|++++|+..+...++..+.
T Consensus 6 ~~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 6 PDIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred ccHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 457788999999999 9999999999999999999999999999999554
No 246
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.48 E-value=0.81 Score=39.91 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=52.0
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 461 QCYLMLKKPEAAISDTTRALSLSKTMS------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 461 ~~ylkLgdy~eAI~D~~rALeLdPd~~------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.-.++.|+|.+|++.+.+.+....... ...-+...+|.++...|++++|+..+++++++-....
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 445788999999999999987754421 1356889999999999999999999999999955433
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.44 E-value=0.89 Score=51.09 Aligned_cols=89 Identities=15% Similarity=0.026 Sum_probs=77.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHcC
Q 046116 426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT-MSSHSKSLWRRSQAYDMMG 504 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd-~~~n~KA~~rrG~a~~~LG 504 (604)
...+.+.|.+.........|+ .+..+...|..+...|+.++|+..+++++...+. .+.+.-.+|.+|.++..++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~-----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPN-----SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 356778999999999999999 8999999999999999999999999999965544 1234557999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 046116 505 LAKESLMDALTFIGS 519 (604)
Q Consensus 505 d~dEAL~d~~kALkl 519 (604)
+|++|...|.+..+.
T Consensus 320 ~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKE 334 (468)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999998886
No 248
>PLN03077 Protein ECB2; Provisional
Probab=91.28 E-value=1.6 Score=52.18 Aligned_cols=97 Identities=9% Similarity=-0.093 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
....|....+.+.+.|+.++|++.|++.++. .|+ ...|...-.++.+.|++++|...++...+..+- .++.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-~P~~ 625 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-TPNL 625 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-CCch
Confidence 4556778888899999999999999998874 565 455555666788999999999999988743221 1246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
+.|.-+..++...|++++|.+.+++.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 88888999999999999999887764
No 249
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.08 E-value=1.3 Score=49.93 Aligned_cols=204 Identities=18% Similarity=0.060 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHhhcCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhh---hhccccCccc--cccHHHHHH
Q 046116 310 WQYAAIDSLLLLLKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQD---YHKVKYGNLK--LKSKKAGRA 384 (604)
Q Consensus 310 wq~~~idcll~Ll~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~d---y~~ik~g~L~--~~~~~~~~a 384 (604)
-.-.+.+|++.++---.| | ..+++.-+|.=|.++...+.....|+.+...-... ++....+.+. +..+-...+
T Consensus 135 ~~~aa~v~~l~~~l~~~t-~-q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~yk 212 (696)
T KOG2471|consen 135 SSSAASVTLLSDLLAAET-S-QCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYK 212 (696)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhh
Confidence 344556666664322222 2 24677777877888888888777775554322111 0000001000 000000001
Q ss_pred HH---HHHHHHHHHHHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC---CcccchHHHHH
Q 046116 385 LD---EIWDLKVQKRKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKA-LDLCPL---KMRKERIVLYS 457 (604)
Q Consensus 385 L~---el~~~kvE~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkA-Lel~P~---~~~~~~a~l~~ 457 (604)
.. ...+++.-.++....|.. ....+..+.-+.+..|-.|+|..|.+..... |...|. ...-..-.+++
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~-----a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNI-----AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh-----cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 11 112222111111112211 1135677888899999999999999876543 222232 00011345669
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHh---------cCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 458 NRAQCYLMLKKPEAAISDTTRALS---------LSKT------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 458 NRA~~ylkLgdy~eAI~D~~rALe---------LdPd------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
|++-++++++.|..++-.+.+||+ +.|. .+.....+|+.|..|...|+.-.|.+.|.++...+
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999996 2232 12357789999999999999999999999999874
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.02 E-value=2.6 Score=43.92 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------------CcccchHHHHHHHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------------------KMRKERIVLYSNRAQCYL 464 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------------------~~~~~~a~l~~NRA~~yl 464 (604)
.....+.+..+...|+..+|+......+..... ......+.++..+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888872111 112334556666666666
Q ss_pred Hc------CCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhc
Q 046116 465 ML------KKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK-----------------ESLMDALTFIGS 519 (604)
Q Consensus 465 kL------gdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d-----------------EAL~d~~kALkl 519 (604)
.+ +++++++..++.|++++|+ +.++|+..|..+..+-+.+ .|+..|-+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~ 338 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPS---WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL 338 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 66 7888899999999999999 9999999999887764333 356666666666
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.80 E-value=0.76 Score=36.68 Aligned_cols=32 Identities=6% Similarity=-0.029 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+|.+|.+++++|+|++|+..+..+|+..|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35789999999999999999999999999443
No 252
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.74 E-value=4.9 Score=45.47 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=95.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
+..+.-....|..-|.=--.++++..|-..|.+||+.+.. +..+|..-|.+-++.+....|-...++|+.+-|.
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR- 139 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR- 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-
Confidence 3334445677888888888999999999999999999988 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
--+.+|.--..-..+|+...|.+.|.+-++..|
T Consensus 140 --VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P 172 (677)
T KOG1915|consen 140 --VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP 172 (677)
T ss_pred --HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence 889999999999999999999999999998833
No 253
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.45 E-value=2.1 Score=51.04 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=90.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
-+..-+...-...-.|-.+++.|++++|..+....=..-|+ +-..+.-.-.||..++++++|...|.+++.-+|+
T Consensus 35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 34455666677778888899999999998544333333344 5666777788999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKS 554 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~r 554 (604)
.+-++.+=.+|...++|.+--+.--+..+..| +-.+++..++.-+++....+.+...
T Consensus 110 ----eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--------k~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 110 ----EELLYHLFMAYVREKSYKKQQKAALQLYKNFP--------KRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------cccchHHHHHHHHHHhccCCccccc
Confidence 45566666777777777655544444444433 3456778887777776554444333
No 254
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=1.2 Score=46.84 Aligned_cols=73 Identities=21% Similarity=0.143 Sum_probs=64.2
Q ss_pred ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 449 RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 449 ~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
......+..|.=..|...++++.|..+..+.+.++|. .+...--||-+|.++|.+.-|+.|+..+++.+|+..
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3445667777788999999999999999999999999 888888999999999999999999999999987533
No 255
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=90.05 E-value=0.49 Score=33.86 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 130 FAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 130 ~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
-+..-++.|+||+|++||.. -..--|+.|+.||+.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 34556799999999999983 467779999999998863
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.71 E-value=4.4 Score=42.15 Aligned_cols=107 Identities=19% Similarity=0.054 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC---CC------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116 409 ENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLC---PL------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~---P~------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r 478 (604)
.....+..+.+-|..+++++ +|++|+...++|.++. +. +..+....++..++.+|+..+.++.... |..
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~ 108 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALN 108 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHH
Confidence 44567889999999999999 9999999999999984 11 2335678889999999999998765444 455
Q ss_pred HHhc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 479 ALSL----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 479 ALeL----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++++ -|+ ++..++-.=.++...++.+++.+.+.+.+..
T Consensus 109 ~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 109 ALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4443 355 6666655556666688889888888888876
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.68 E-value=0.62 Score=33.16 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+.|+|.+|..+|+|++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34455555555555555555555555543
No 258
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=4.6 Score=42.63 Aligned_cols=95 Identities=12% Similarity=-0.056 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML----KKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL----gdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.--.-+.+.+..+++-|.....+..+++.+ ..+..+|.++.++ +++.+|.-.|..--+--|. .+..
T Consensus 140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~l 209 (299)
T KOG3081|consen 140 AALNVQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLL 209 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHH
Confidence 334445566666777777777777777655 5666778888776 4678888888887774555 6888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+...+.|+..+|+|+||...++.+|..++
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999844
No 259
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.37 E-value=3.9 Score=46.22 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
.-+..|..-+.-..++.+...|-.....||-.||. ..++-.--..-+++++++.+-..|.+-|+.+|. +-.
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c~ 472 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NCY 472 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hhH
Confidence 35666777777788888999999999999999997 555555566778889999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++..-|..-..+|+.+.|...|.-|+..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 9999999999999999999999988876
No 260
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=9.4 Score=39.84 Aligned_cols=130 Identities=11% Similarity=-0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116 414 VFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--- 488 (604)
Q Consensus 414 A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--- 488 (604)
+...+..|..+-.. .+++.||.+|.+|-+....+ .....-.++..-|.---.+++|.+||..+.++..-.-+++.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 33444445544444 68999999999999985441 11123345555566666789999999999998865544211
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 489 HSKS-LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 489 n~KA-~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
..|- +++-|.||+..++.--+...+++..+++|.-.+....+....+...+..+.
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d 248 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD 248 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence 2344 456688999889999999999999999776655444444444444444433
No 261
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.03 E-value=6.1 Score=47.39 Aligned_cols=91 Identities=16% Similarity=0.059 Sum_probs=71.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116 424 EFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L 503 (604)
....++|..|+...++.+...|+ ...+....|..++++|++++|....+..-.+.++ ....+--+-.+|..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHH
Confidence 44567888999999999999998 6777777788999999999999544444444555 666777788899999
Q ss_pred CCHHHHHHHHHHHHhchhh
Q 046116 504 GLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 504 Gd~dEAL~d~~kALkl~~~ 522 (604)
|++++|...|++++...|+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc
Confidence 9999999999999988554
No 262
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.82 E-value=4.8 Score=44.55 Aligned_cols=97 Identities=18% Similarity=0.039 Sum_probs=81.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 422 NQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 422 N~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
......|+++.|+++.+...+. .++..+...+.++.-+|...+.. +...|..+..++++|.|+ ...+-.--+.
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pd---lvPaav~AAr 271 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPD---LVPAAVVAAR 271 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCc---cchHHHHHHH
Confidence 3456889999999998877653 55555556788888888777665 489999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhchhh
Q 046116 499 AYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+++..|+...+-..++.+-+..|+
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCC
Confidence 999999999999999999998654
No 263
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.75 E-value=0.99 Score=32.10 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLC 444 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~ 444 (604)
+..+.+.|+.++..|+|++|+..+.+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5678899999999999999999999999874
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.32 E-value=22 Score=40.64 Aligned_cols=63 Identities=11% Similarity=-0.071 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
.-+...+|+|.-++|+.++||+.++..++..|. ..+...++++..++..++.|.++...+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445566799999999999999999999998875 226778999999999999999887776654
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.80 E-value=5.3 Score=41.56 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-----
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----- 485 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----- 485 (604)
...+..+...+..+-+.|+++.|.....++....+. .....+.+....|......|+..+|+...+..+.-...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~-~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS-SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 346678899999999999999999999999998754 12225677778899999999999999999888871100
Q ss_pred --------------------------CCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhchhh
Q 046116 486 --------------------------MSSHSKSLWRRSQAYDMM------GLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 486 --------------------------~~~n~KA~~rrG~a~~~L------Gd~dEAL~d~~kALkl~~~ 522 (604)
.....++++.+|.-...+ +..++++..|+++++.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 011456788888888888 8889999999999999553
No 266
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.45 E-value=0.77 Score=47.40 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=55.1
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 461 QCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 461 ~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
....+-++.+.|.+.+.+|+++-|. +...|+|.|.-..+-|+++.|.+.|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456778999999999999999999 99999999999999999999999999999997654
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.38 E-value=58 Score=37.03 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=124.1
Q ss_pred HHHhHhhhhhccccCCCCCccchhHHHh------hHHHHHHHHHhhcCCchhhHHHHHHHHHhhcCcchHHHHH----HH
Q 046116 265 DFLKIVCGMWGGLANHTSPAGIGLIRAF------LKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVI----DI 334 (604)
Q Consensus 265 ~~~~~~~~~w~~l~~~~sp~g~g~~~~~------~~~~~~~lc~~~rssd~wq~~~idcll~Ll~dr~T~y~al----gk 334 (604)
.|+-++-.||+- ..++|---=++.++ .++-+-.+||.-=++. |.+|..-+-++...-+.. +.
T Consensus 242 ~~~mq~l~~We~--~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~------i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 242 PPLMQILENWEN--FYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSK------IEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred cHHHHHHHHHHh--hccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999953 23445444455555 5666677888544332 333333333332221111 22
Q ss_pred HHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHHH
Q 046116 335 AALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKLMSDEEMKENELSV 414 (604)
Q Consensus 335 a~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ms~edlee~~~~A 414 (604)
+..|=+=|+-|.-+.|+..+++.+... ....+.+ -..+......++...++.. . .....+ .+...+
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls-~~~lq~I-----v~~DD~~~Tklr~yL~lwe-~-~qs~Di------DrqQLv 379 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLS-PKVLQDI-----VCEDDESYTKLRDYLNLWE-E-IQSYDI------DRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcC-HHHHHHH-----HhcchHHHHHHHHHHHHHH-H-HHhhcc------cHHHHH
Confidence 333334455566666666666555211 1111111 1111122333444444431 1 011111 233456
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC--------------------------------------c---ccch
Q 046116 415 FMLKQQGNQEFWAGY-IEEAVKKYSKALDLCPLK--------------------------------------M---RKER 452 (604)
Q Consensus 415 ~~lk~~GN~lfk~Gd-yeeAIe~YtkALel~P~~--------------------------------------~---~~~~ 452 (604)
..+..-+..+.+.|. -++|++....++...|.. . .--+
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 666667777777776 566776666666554430 0 0001
Q ss_pred HHHHHH--HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 453 IVLYSN--RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 453 a~l~~N--RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
..+-+- =|.-.+..|+|.++..++.=..+++|. +.+|--+|.+++...+|+||...+.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 122222 255667889999999999999999997 8999999999999999999998854
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.18 E-value=10 Score=37.09 Aligned_cols=87 Identities=10% Similarity=-0.150 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+.+........++.+++...+...--+.|. .+.+-.--|..++..|+|.+|+..++.+..-.|. .+-+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~---~p~~ 80 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPG---FPYA 80 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---ChHH
Confidence 4667888888888999999999999988889999 8888888899999999999999999998777776 4433
Q ss_pred HHHHHHHHHHcCCHH
Q 046116 493 LWRRSQAYDMMGLAK 507 (604)
Q Consensus 493 ~~rrG~a~~~LGd~d 507 (604)
---++.|++.+|+.+
T Consensus 81 kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 81 KALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHcCChH
Confidence 334588999999864
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.85 E-value=2.5 Score=44.70 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKES 509 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEA 509 (604)
|.+=+....++++- ....++..++..+...++++.+++..++-+.++|- +-++|.++-.+|+..|+...|
T Consensus 137 f~~WV~~~R~~l~e-------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~a 206 (280)
T COG3629 137 FDEWVLEQRRALEE-------LFIKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAA 206 (280)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHH
Confidence 45555555555443 36789999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhc
Q 046116 510 LMDALTFIGS 519 (604)
Q Consensus 510 L~d~~kALkl 519 (604)
+..|+..-+.
T Consensus 207 i~~y~~l~~~ 216 (280)
T COG3629 207 IRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 270
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=86.37 E-value=4.7 Score=42.07 Aligned_cols=103 Identities=12% Similarity=-0.021 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 412 LSVFMLKQQGNQEFW-AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk-~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.....+...|...+. .++.+.|...|..++...|. +..+|..-..-++++++.+.|-..+++++..-|. ..
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~ 104 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DPDFWLEYLDFLIKLNDINNARALFERAISSLPK---EK 104 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hh
Confidence 456677788888777 56667799999999999998 7888888888888999999999999999987666 33
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 491 ---KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 491 ---KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..|-+...--...|+.+...+.++++.+..+.
T Consensus 105 ~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 105 QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 35556677777888888888888888888554
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.32 E-value=4.7 Score=45.75 Aligned_cols=93 Identities=13% Similarity=0.014 Sum_probs=64.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-------CCC---------
Q 046116 422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-------SKT--------- 485 (604)
Q Consensus 422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-------dPd--------- 485 (604)
+.+.+..+.+.-|+.-.+||+++|+ -+.+|.-+|.= ......+|...+++|++. +..
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pd-----CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPD-----CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhh-----hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 3456678899999999999999998 66666655441 111234455555555432 211
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 486 ------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 486 ------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+...-+-.|+|.|..++|+.+||++.++..++..|
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 011244567889999999999999999999999855
No 272
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=84.90 E-value=74 Score=40.66 Aligned_cols=101 Identities=16% Similarity=-0.057 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.+......|-+.++|++|.+.|+.-++..-+ ....|...+..++..++-++|-.-+.+||+--|. ..|.+..-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Isk 1605 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISK 1605 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHH
Confidence 4444455555555555555555555555444 4555555555555555555555555555555554 224444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
-|+.-++.|+.+.+...|+-.+...|+
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 555555555555555555555555433
No 273
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=84.83 E-value=11 Score=39.32 Aligned_cols=99 Identities=16% Similarity=-0.081 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
|....+..-+.+..+.|-..|.+|+.-.+. ...+|..-|..-.. .++.+.|...++.+++.-|. +...+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~ 75 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC-----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 444445555555588889999999855444 56778877877566 45666699999999999998 8888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 496 RSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 496 rG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
-..-+..+|+.+.|...|++++...+..
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 8888889999999999999998875443
No 274
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.68 E-value=5.5 Score=41.93 Aligned_cols=75 Identities=19% Similarity=0.117 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
-..+.=+.+...++++.|...-.+.|.++|. ++.-+.-||.+|.++|.+.-|++|+...++.-|+ .+.+-.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~-----dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~---~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPE-----DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD---DPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCC-----ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC---chHHHHH
Confidence 3344456677889999999999999999999 8888899999999999999999999999999999 5555444
Q ss_pred HHH
Q 046116 496 RSQ 498 (604)
Q Consensus 496 rG~ 498 (604)
+.+
T Consensus 255 r~~ 257 (269)
T COG2912 255 RAQ 257 (269)
T ss_pred HHH
Confidence 433
No 275
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.49 E-value=3.7 Score=39.32 Aligned_cols=75 Identities=12% Similarity=-0.023 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 415 FMLKQQGNQEFWAG---YIEEAVKKYSKALD-LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 415 ~~lk~~GN~lfk~G---dyeeAIe~YtkALe-l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+...+.+-.+.... +..+-|..+...++ -.|. ..-.+.+.+|..|.++++|+.++.+++..|+.+|+ |.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~----~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~---n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE----RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN---NR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc----cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC---cH
Confidence 34445555555443 35677888888886 3444 35667777889999999999999999999999998 77
Q ss_pred HHHHHH
Q 046116 491 KSLWRR 496 (604)
Q Consensus 491 KA~~rr 496 (604)
.|.--.
T Consensus 106 Qa~~Lk 111 (149)
T KOG3364|consen 106 QALELK 111 (149)
T ss_pred HHHHHH
Confidence 765433
No 276
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.35 E-value=20 Score=40.02 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CC-CCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS----KT-MSS 488 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd----Pd-~~~ 488 (604)
=..+.+.|..+...|+++.|+..|.++-++|.. .+.-...+.|.-.+-+-+|+|..-.....+|.+-- .- ..-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs--~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS--AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc--hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 346778899999999999999999999999876 33456677788888899999999999999887651 11 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++...--|.++..+++|..|...|..+..-
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566777799999999999999988766544
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.39 E-value=4.5 Score=46.74 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 046116 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG 504 (604)
Q Consensus 425 fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG 504 (604)
--+|+..+|+.+|..|+-+.|. .. .-..+.-+|.++.++|.-.+|--.+..|+.-.|. .+.-+|-+++++.++|
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~--h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~---~t~n~y~l~~i~aml~ 297 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSR--HN-KDIALLSLATVLHRAGFSADAAVILHAALDDADF---FTSNYYTLGNIYAMLG 297 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCc--cc-ccchhhhHHHHHHHcccccchhheeehhccCCcc---ccccceeHHHHHHHHh
Confidence 3568999999999999999887 11 2344555899999999999999999999998888 7777999999999999
Q ss_pred CHHHHHHHHHHHHhchhh
Q 046116 505 LAKESLMDALTFIGSRMK 522 (604)
Q Consensus 505 d~dEAL~d~~kALkl~~~ 522 (604)
+|..++..|..+.+..+.
T Consensus 298 ~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 298 EYNHSVLCYDHALQARPG 315 (886)
T ss_pred hhhhhhhhhhhhhccCcc
Confidence 999999999999988443
No 278
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.37 E-value=4.6 Score=40.86 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116 433 AVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 433 AIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~ 502 (604)
|+.+|.+|+.+.|. ....|+.+|..+...|+.-+|+-.|-+++..... +..|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~-----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P---f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS-----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP---FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT-----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC-----CCCcccchhhhhccccchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHH
Confidence 78899999999999 8999999999999999999999999999987766 78888888888777
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.30 E-value=2 Score=48.59 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--------CCC----cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALD-LC--------PLK----MRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALe-l~--------P~~----~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
...+.+.|-..|+.|.|..++..|.+||. .| |.. ...-...+.+|.+..|+..|++-.|...+.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 44568999999999999999999999996 22 220 111257799999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHH
Q 046116 481 SLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 481 eLdPd~~~n~KA~~rrG~a~~~ 502 (604)
..--. ++..|.|+|.|..+
T Consensus 363 ~vfh~---nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHR---NPRLWLRLAECCIM 381 (696)
T ss_pred HHHhc---CcHHHHHHHHHHHH
Confidence 98888 89999999998765
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.52 E-value=2 Score=32.06 Aligned_cols=30 Identities=3% Similarity=-0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
..|.++|.+-...++|++|+.||++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999883
No 281
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.40 E-value=21 Score=34.36 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHcCC---cHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCC
Q 046116 452 RIVLYSNRAQCYLMLKK---PEAAISDTTRALS-LSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTN 527 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgd---y~eAI~D~~rALe-LdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~ 527 (604)
.....+|.|.++.+..+ ..+.|..+...++ -+|. ..-.-.|.++..++.+++|+.|+...+..++..| +
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~-----~ 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP-----N 103 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC-----C
Confidence 36777888888887764 5678888888887 4444 2556788899999999999999999999999933 2
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 046116 528 RVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 528 ~~~i~~~l~rlikKqk~~ 545 (604)
| .-...+.+.+.+.+.+
T Consensus 104 n-~Qa~~Lk~~ied~itk 120 (149)
T KOG3364|consen 104 N-RQALELKETIEDKITK 120 (149)
T ss_pred c-HHHHHHHHHHHHHHhh
Confidence 3 2333455555554444
No 282
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.32 E-value=29 Score=43.97 Aligned_cols=100 Identities=15% Similarity=-0.062 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...|...-|....-|.-+.-.+.|.+|.+++.. ...|..++-.|.+-+++++|.+.++..++--.. -.+.|
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW 1567 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVW 1567 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHH
Confidence 334444445555556777788899999999865 688999999999999999999999999987777 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+.|..++...+.+.|...+.+||+..|+
T Consensus 1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999776
No 283
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.63 E-value=2 Score=32.00 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
.+|..+|.+.+..++|++|+.|+.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457778888888888999999999888764
No 284
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=78.04 E-value=3.8 Score=35.30 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=68.2
Q ss_pred hhhhHHHHhhhcCCC-CCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPD-DPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~-~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-++..|+|++-..|. -.+|-+.|+++=+..++. ++|.-+=.+|+=+++..+=+..+-.+..++.|+||
T Consensus 26 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 26 EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-----------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-----------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 477788888776333 233445577777666654 24555556888889999888888899999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
.|+++|... +.=-++.|.-+|++|++
T Consensus 95 ~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 999999876 33334577888887763
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=9.3 Score=40.12 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH----HhcCCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA----LSLSKT 485 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA----LeLdPd 485 (604)
++.+....+++-.....-+.++|+..|++++.+-.. .....-..++...+..+.++++|.+|-..+.+- ++.+.-
T Consensus 107 pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 345556667777778888999999999999997443 123345778888899999999999987766553 333322
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.-.+++.-.-.+|....+|..|...|+.+-..
T Consensus 187 -~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 187 -NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 114566766666777777999999998887766
No 286
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=77.88 E-value=5.1 Score=43.17 Aligned_cols=70 Identities=19% Similarity=0.007 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.+.+-.+.|.-..+.|+.++|...+..|+.++|+ ++.++.+.|+...+-.+.-+|-..|-+||...|.+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3444555666677889999999999999999999 999999999999999999999999999999966543
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.79 E-value=26 Score=36.70 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---CC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS---SH 489 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~---~n 489 (604)
++-+...||.+--.+++..|=..|-+|-++.-. ..+.+.+..|..-+.||-+. +..+|+..+.+|+++-.+.. .-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333444444444445555555555555554211 12233556666666666655 77777777777777765511 11
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhchh
Q 046116 490 SKSLWRRSQAYDMM-GLAKESLMDALTFIGSRM 521 (604)
Q Consensus 490 ~KA~~rrG~a~~~L-Gd~dEAL~d~~kALkl~~ 521 (604)
++-+..+|..|..- .+++.|+..|+.+-+...
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 23344455555544 667777777777766643
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.21 E-value=12 Score=40.98 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-CCCCCCCHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-SKTMSSHSKSL 493 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-dPd~~~n~KA~ 493 (604)
+..-..+-.++.+|++.+|...+++.|+-.|. +...+..--.+|+-+|+...-.....+++-- +|+.+-+.-.+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~Pt-----Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPT-----DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCch-----hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 44555667789999999999999999999998 5555555556788899999988889998866 66622123333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
=..+..+...|-|++|.+.-++++++.+
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~ 206 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINR 206 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCC
Confidence 3358889999999999999999999943
No 289
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.39 E-value=8.5 Score=41.23 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...++...|..|+..|.+.+|++.+++++.+||- +...+.-+-+.+..+|+--.+++.|.+.-+.
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4556666788999999999999999999999999 8888888999999999999999988876655
No 290
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=20 Score=41.46 Aligned_cols=96 Identities=15% Similarity=-0.035 Sum_probs=79.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHH-HHhcCCCCCCCHHHHHHH--
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR-ALSLSKTMSSHSKSLWRR-- 496 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r-ALeLdPd~~~n~KA~~rr-- 496 (604)
..-.+...++...|+-....++..+|. ++.++.|++.+....|....++.+... +....|+ +......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~ 144 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE-----NCPAVQNLAAALELDGLQFLALADISEIAEWLSPD---NAEFLGHLIR 144 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc-----cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc---hHHHHhhHHH
Confidence 455666778888999999999999999 899999999998888876666665555 9999999 77776666
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 497 ----SQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 497 ----G~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++.+..+|+..++..+..++..+.++.
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 145 FYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 888999999999999999999985543
No 291
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.78 E-value=6.9 Score=32.11 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.+..+..+|...=+.|+|++|+++|++|++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5677888888888999999999999999886
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.64 E-value=53 Score=32.18 Aligned_cols=122 Identities=12% Similarity=-0.046 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCH
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKI 531 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i 531 (604)
-...+.....+-+..++.+++..-+...-.+.|. ++..-.--|..+...|++.+|+..++...+. .+.....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p~~ 80 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFPYA 80 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCChHH
Confidence 4556667777888889999999999998899999 9999999999999999999999999997655 3344555
Q ss_pred HHHHHHHHHHHHhcCccchHHhhhhcCCchhHHHHHHHHHhHHHHHHHHH
Q 046116 532 PYYAAVMINKQMNATWPFIHAKSKMCKPSIIEEKLVEKTCRRRKLEKARR 581 (604)
Q Consensus 532 ~~~l~rlikKqk~~~~l~~ea~rKm~k~~~~e~~lvek~~~~~k~ekArR 581 (604)
+..+.-.+.......|......---..+......+|.....+.....+.+
T Consensus 81 kALlA~CL~~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 81 KALLALCLYALGDPSWRRYADEVLESGADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCChHHHHHHHHHHHhccccchhh
Confidence 66666667777777887664433333334445555655555555444443
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.46 E-value=21 Score=37.64 Aligned_cols=106 Identities=17% Similarity=0.020 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---C
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---H 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---n 489 (604)
.+..+-..|-.+-....+.|+...|.+|+.+.-...+.+.+..-..+|.=.++..++++|+..|++++.+--...+ -
T Consensus 70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555556677899999999999998433223336777777888889999999999999999876433111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIG 518 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALk 518 (604)
..-+-..+.++..+.+|+||-..+.+-..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 33445567788999999998777665433
No 294
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.19 E-value=6.9 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+.+|.+|..+|+++.|...+++.+..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367899999999999999999999864
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.08 E-value=37 Score=32.99 Aligned_cols=86 Identities=12% Similarity=-0.143 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+.+........++.+++.......=-+.|+ .+.+-.--+..++..|+|.+|+..++...+-.+. .+-+-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-----~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~---~p~~k 81 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-----LKELDMFDGWLLIARGNYDEAARILRELLSSAGA---PPYGK 81 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC---chHHH
Confidence 344555555556688999998888888888998 7788888889999999999999999998877665 44344
Q ss_pred HHHHHHHHHcCCHH
Q 046116 494 WRRSQAYDMMGLAK 507 (604)
Q Consensus 494 ~rrG~a~~~LGd~d 507 (604)
--++.|++.+||.+
T Consensus 82 AL~A~CL~al~Dp~ 95 (153)
T TIGR02561 82 ALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHhcCChH
Confidence 44588999999853
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=74.48 E-value=17 Score=43.87 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=87.9
Q ss_pred hcCcchHHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHHHHHHhc
Q 046116 322 LKDPDTRYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQKRKKEKL 401 (604)
Q Consensus 322 l~dr~T~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~~~~E~~ 401 (604)
|.-+..||..|.|-.-+.--|++-.++.....+-..- -- .|.+ ......+.+...+|+.+....+.+.+.-..
T Consensus 822 lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr--~T--yy~y---A~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 822 LYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLR--NT--YYNY---AKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehh--hh--HHHH---HHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 3445667777777776777777777775433221110 00 1111 111233445666666554433222222111
Q ss_pred cChHHHHH------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 402 MSDEEMKE------NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 402 ms~edlee------~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
+.+ .+.. +.....-++--|..+-..|+.+.|+..|..|-+.... -.++.-+|+.++|-..
T Consensus 895 L~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~-------------VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 895 LKE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM-------------VRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh-------------eeeEeeccCchHHHHH
Confidence 111 1111 1122334555677778889999999999888665432 2223335666665444
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
+++ .. +..|-|.+|.-|...|++.+|+.-|.+|
T Consensus 961 A~e-----sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEE-----SG---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHh-----cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 332 33 5567777777777777777777766554
No 297
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=48 Score=35.32 Aligned_cols=120 Identities=9% Similarity=0.097 Sum_probs=91.2
Q ss_pred HHHHHhccChHHHHHhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH-HH
Q 046116 395 KRKKEKLMSDEEMKENELSVFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE-AA 472 (604)
Q Consensus 395 ~~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~-eA 472 (604)
+..+.-.++.+.+.-++..-..|.-+-+.+-.. .+..+=++..++.++-+|. +..+|..|=.+.-.+|++. .=
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-----NYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-----NYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHhcCcccch
Confidence 334444445544444444444443333333222 3456778889999999999 8999999999999999988 88
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 473 ISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 473 I~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..++.+|..|.. |..|+-.|--+....+.|+.-+....+.|+.+..
T Consensus 133 Lef~~~~l~~DaK---NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 133 LEFTKLMLDDDAK---NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HHHHHHHHhcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 9999999999999 9999999999999999999999999998887443
No 298
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.29 E-value=19 Score=38.16 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=76.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 046116 425 FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 425 fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L 503 (604)
++...-..|+..-..+|.++|- +.++|..|-.+.-.++ +..+=+...++.++-+|. |...+..|-.+...+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpA-----nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK---NYQvWHHRr~ive~l 125 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPA-----NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK---NYQVWHHRRVIVELL 125 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHHh
Confidence 3445668999999999999999 8999999988888776 677788899999999999 999999999999999
Q ss_pred CCHH-HHHHHHHHHHhchh
Q 046116 504 GLAK-ESLMDALTFIGSRM 521 (604)
Q Consensus 504 Gd~d-EAL~d~~kALkl~~ 521 (604)
|++. .-+.-.+.++..+.
T Consensus 126 ~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 126 GDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred cCcccchHHHHHHHHhccc
Confidence 9988 77888888888633
No 299
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.24 E-value=9.2 Score=38.64 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 472 AISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
|+.+|.+|+.+.|+ +..+|.++|.++...|+.-+|+=.|-+++-. ..+......-+..++.+
T Consensus 1 A~~~Y~~A~~l~P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-----~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-----RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-----SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC---CCCcccchhhhhccccchHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHH
Confidence 78899999999999 9999999999999999999999999999966 22234455566666666
No 300
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.89 E-value=7.8 Score=33.25 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..++-.+=+.|+|++||.+|++||++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35777888888888999999999999988875
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.45 E-value=40 Score=35.06 Aligned_cols=94 Identities=27% Similarity=0.175 Sum_probs=70.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhc----CCCC-------C
Q 046116 424 EFWAGYIEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSL----SKTM-------S 487 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeL----dPd~-------~ 487 (604)
..++|+++.|..+|+|+=.+. |+ .....+..++|.|...++.+ ++++|+..+++|.++ .+.. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~-~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPD-MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcH-HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999997654 43 34457888999999999999 999999999999988 3221 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...+.+.-++.+|...+.++...+ ...+++.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~ 112 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEK-ALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHH-HHHHHHH
Confidence 134567778999999888763333 4444444
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.40 E-value=28 Score=32.95 Aligned_cols=69 Identities=19% Similarity=0.084 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-------CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-------~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
.+--+--....+-..|+|++++..-.+||.+ +.+ .-++...+-++||.++..+|+.++|+..++.+-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4556667777889999999999999999876 333 23445667788999999999999999999998764
No 303
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=71.74 E-value=14 Score=31.65 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.+..+..+|..+=+.|+|++|+.+|.+||+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5778888899999999999999999999885
No 304
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.50 E-value=6.1 Score=32.76 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=45.1
Q ss_pred hhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116 103 WLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA 177 (604)
Q Consensus 103 ~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 177 (604)
.|.++.|-+|=..|++.+|.+ ... .++|+|+++|. -=.|.=++.|++|||.+.+.+ .++.+.
T Consensus 7 ~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~~~-~~~~L~ 68 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLK-DEDPMVRRAAARALGRIGDPE-AIPALI 68 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCHHHH-THHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 344566666778899999933 333 34999999995 568899999999999998643 444443
No 305
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=69.94 E-value=15 Score=34.27 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=37.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 405 EEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 405 edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
.+.++.+.....-...|..+...|++++|+.++-+||..+|.
T Consensus 54 ~d~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 54 NDPEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456677778888999999999999999999999999999998
No 306
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.60 E-value=27 Score=33.43 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=37.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 405 EEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 405 edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
.+.++.+.....-.+.|..++.+|+++++..++..||.++|.
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 445667778888899999999999999999999999999998
No 307
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.11 E-value=19 Score=36.48 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH-HHHHHHHH
Q 046116 426 WAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS-KSLWRRSQ 498 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~-KA~~rrG~ 498 (604)
.+.=+..|++.|.+|++.... ........+.+..|..+.++|++++|+..+.+++..... +. ..+..+|+
T Consensus 137 E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~---s~~~~l~~~AR 208 (214)
T PF09986_consen 137 EKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA---SKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC---CCcHHHHHHHH
Confidence 333467888888888887533 122335678888999999999999999999999986544 22 34555554
No 308
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.05 E-value=11 Score=32.43 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..++-.+=+.|+|++|+.+|.+||++
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35677888888888999999999999999986
No 309
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.01 E-value=74 Score=33.97 Aligned_cols=86 Identities=9% Similarity=-0.139 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH---HHHHHHHcCCH
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR---RSQAYDMMGLA 506 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r---rG~a~~~LGd~ 506 (604)
.+.-+..|.+||+.+|+ +..++..+=.+..++.+-++..+-.++++..+|+ +...|.. --+.....-.+
T Consensus 47 ~E~klsilerAL~~np~-----~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-----SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcH
Confidence 56779999999999998 7888887777888888999999999999999999 6655433 23333334467
Q ss_pred HHHHHHHHHHHhchhhc
Q 046116 507 KESLMDALTFIGSRMKC 523 (604)
Q Consensus 507 dEAL~d~~kALkl~~~~ 523 (604)
++....|.++|......
T Consensus 119 ~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88899999998875443
No 310
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.85 E-value=14 Score=35.25 Aligned_cols=50 Identities=12% Similarity=-0.059 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK 468 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd 468 (604)
++....++...+..|+|.-|++..+.++..+|+ +..+..-+|.+|.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~-----n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD-----NEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999999998 78888888888877764
No 311
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.57 E-value=7.4 Score=33.36 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC 444 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~ 444 (604)
.+..+..+|...=..|+|++|+..|..||+++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 57778888888889999999999999999974
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.40 E-value=25 Score=40.13 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+...-.--......|+.-.|-.....+|.-.|. .+..-..++.++..+|+|+.|..+..-+=.+-.. -.++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~-----~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---~~~~ 359 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQ-----DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---TDST 359 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCC-----CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---CchH
Confidence 3444445555667789999999999999999988 7888888999999999999998877665544333 3345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFI 517 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kAL 517 (604)
.--+-..+..+|++++|+..-...+
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4444555556666666655544433
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.90 E-value=36 Score=34.58 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSHSKSLWRRSQAYDMMGLAKESL 510 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n~KA~~rrG~a~~~LGd~dEAL 510 (604)
..+.+.+.+|.-|. ..+.++|+..+.++|++.+.. +.+++.+.-++.+++.+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 36888888877776 578899999999999998775 778999999999999999999874
No 314
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=67.47 E-value=21 Score=30.00 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778888899999999999999999999986
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.29 E-value=30 Score=36.73 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
....+.+....+...|+++.+++..++.|+.+|- +-.+|..+=..|++.|+...||..|++.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-----~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY-----DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4667788889999999999999999999999999 788999999999999999999999988765
No 316
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.94 E-value=7.3 Score=26.03 Aligned_cols=23 Identities=13% Similarity=-0.129 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 046116 492 SLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
+++.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 317
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.84 E-value=93 Score=35.79 Aligned_cols=104 Identities=13% Similarity=-0.021 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCC--
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-LSKTMS-- 487 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-LdPd~~-- 487 (604)
...+.-..-.|.....-+.|++|...|..|..+... .++.+.+-.|.|..|+..++- +|+.++++ +.|.+.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNS 437 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCc
Confidence 345666778888888899999999999999998654 455677888999999997764 34455554 344421
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 488 -----SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 488 -----~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
.....+|-.|.-.+..+++.||..-.++.++.-
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 124568888999999999999999999998873
No 318
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.67 E-value=19 Score=26.46 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKK--YSKALDLCPL 446 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~--YtkALel~P~ 446 (604)
+.+...|-.++.+|+|++|++. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3566778899999999999999 5488777775
No 319
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=65.31 E-value=21 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=..|+|++|+.+|..||+.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999986
No 320
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.08 E-value=27 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667788888888899999999999999986
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.89 E-value=76 Score=32.33 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046116 457 SNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 457 ~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~k 515 (604)
...|..+...+++++|+..++.++....|.+...-+-.|+|.+...+|.+++|+..+..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 44688899999999999999999977666333344568899999999999999988554
No 322
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=64.66 E-value=77 Score=30.71 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=38.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC
Q 046116 404 DEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 404 ~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~ 446 (604)
+.+.++.+.....-...|..+...| ++++|+.+|.+||..+|.
T Consensus 80 p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 80 PTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 3456677778888999999999999 999999999999999998
No 323
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=63.88 E-value=27 Score=29.08 Aligned_cols=31 Identities=35% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.+..+...|...=..|+|++|+.+|..|++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666777888888889999999999999986
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.61 E-value=38 Score=29.56 Aligned_cols=64 Identities=17% Similarity=0.024 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 456 YSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 456 ~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...++.=++...+..+|+.-.++|++-.++......++=-+.++|...|+|.+++..-..=+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667889999999999999998883223445555788999999999999876655555
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.47 E-value=2.9e+02 Score=32.06 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCC
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTTRALSLSKT 485 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~rALeLdPd 485 (604)
|.+--..|.++|...|+ ++.+|..-|.=.+..+. .+.|-.-+.++|+.+|+
T Consensus 121 ~~~v~ki~~~~l~~Hp~-----~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPN-----NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred hhHHHHHHHHHHHhCCC-----CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 55555555555555555 55555544443333333 55555555555555555
No 326
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.25 E-value=36 Score=34.92 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---MSSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
...+-..+|.-|+++|+|++|+..++.+...-.. .......+..+..|...+|+.++.+...-
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3444555677777777777777777776543221 01134456666667777776666555443
No 327
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.17 E-value=1.2e+02 Score=33.57 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=56.7
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhcC
Q 046116 416 MLKQQGNQEFW---AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---------KKPEAAISDTTRALSLS 483 (604)
Q Consensus 416 ~lk~~GN~lfk---~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---------gdy~eAI~D~~rALeLd 483 (604)
.....|.++.+ .|+.++|+..+..++.-+... .+..+.-.|.+|-.+ ...++||..|.++.+++
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~----~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENP----DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC----ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 34455666666 899999999999976654331 677777777766433 34788999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKES 509 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEA 509 (604)
|+ .. +=.+.+.++...|.-.+.
T Consensus 257 ~~---~Y-~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 257 PD---YY-SGINAATLLMLAGHDFET 278 (374)
T ss_pred cc---cc-chHHHHHHHHHcCCcccc
Confidence 77 22 233445555555553333
No 328
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.74 E-value=31 Score=35.32 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
..-..+.|.++|..|+|++|+..|+.+....-. .-..+...++.....|+.++|+.++.+..+-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445568999999999999999999999765221 1134567788889999999999999988776654
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=62.26 E-value=52 Score=39.24 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.-.++.+.|........+++|.++|.+.=.. .|...|++.+.+|++-...... -|+ +.+.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------e~~~ecly~le~f~~LE~la~~----Lpe---~s~l 854 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------ENQIECLYRLELFGELEVLART----LPE---DSEL 854 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------------HhHHHHHHHHHhhhhHHHHHHh----cCc---ccch
Confidence 3456777788888888888888888654322 3456777777777764443322 355 5666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
+=.+|..+...|.-++|...|.
T Consensus 855 lp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 855 LPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHhhchHHHHHHHHH
Confidence 6677777777777777777664
No 330
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.14 E-value=1.6e+02 Score=30.46 Aligned_cols=114 Identities=11% Similarity=-0.019 Sum_probs=68.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCcccc----hHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 424 EFWAGYIEEAVKKYSKALDLC---PLKMRKE----RIVLYSNRAQCYLMLKK-PEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 424 lfk~GdyeeAIe~YtkALel~---P~~~~~~----~a~l~~NRA~~ylkLgd-y~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
+|..|+|+.|++.-.-||+.. |+..+.. .+.-..+-|....+.|+ ++-+....-..+.-+-+.++-..|-+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 467899999999999999974 5533322 23344455666667776 233332222222111111114555444
Q ss_pred H--HHHHH---------HcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 496 R--SQAYD---------MMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 496 r--G~a~~---------~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
+ |..+. ..++...|+..+++|+.++ ++.++...++++-+..+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~------~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN------DKCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC------CCCChHHHHHHHHHHHh
Confidence 4 55452 3467789999999999993 34667777776655544
No 331
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=61.04 E-value=7.7 Score=26.96 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=23.8
Q ss_pred CcHHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116 139 VVLPLMELLRGKISWVEERVAVRALGHLASH 169 (604)
Q Consensus 139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 169 (604)
++|.|+++|.-. +|-=...|+++||.++.|
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 479999999988 555577899999998865
No 332
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.90 E-value=10 Score=42.10 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 460 AQCYLMLKKPEAAISDTTRALSLSKT------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 460 A~~ylkLgdy~eAI~D~~rALeLdPd------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..+|..+|||..|++..+- |+++.. ..-+...+|..|.+|+++++|.+|++.|...+-.
T Consensus 129 lRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665432 122211 0114556666677777777777777666666554
No 333
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=60.73 E-value=9.8 Score=32.41 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=34.1
Q ss_pred hHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHhhhH
Q 046116 154 VEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIACNCF 195 (604)
Q Consensus 154 ve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (604)
.|.|.|+=|+||++|.+--++-+-.+ ++|+.=+++|.+|.
T Consensus 2 ~~lKaaLWaighIgss~~G~~lL~~~--~iv~~iv~~a~~s~ 41 (73)
T PF14668_consen 2 LELKAALWAIGHIGSSPLGIQLLDES--DIVEDIVKIAENSP 41 (73)
T ss_pred hHHHHHHHHHHhHhcChHHHHHHhhc--CHHHHHHHHHHhCC
Confidence 36799999999999999999988843 68999899988764
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.72 E-value=9.1 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHH
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTT 477 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~ 477 (604)
.++.++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777776554
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=60.33 E-value=59 Score=40.06 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=70.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-------CcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-------KPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-------dy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
.++....+.|+.|+..|++.-+-.|. +++-..+.+..|.+.+..- .+++|+..+++.- -.|. -+--|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~ 555 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPG--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVG---APLEY 555 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCC--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCC---CchHH
Confidence 35666778999999999999999998 4555566666666666432 3555555554432 2344 55568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
...|.+|..+|+|+|-++.|.-|++..++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999998553
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.12 E-value=1.2e+02 Score=33.89 Aligned_cols=90 Identities=12% Similarity=-0.009 Sum_probs=59.3
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 425 FWAGYI-EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK------------KPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 425 fk~Gdy-eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg------------dy~eAI~D~~rALeLdPd~~~n~K 491 (604)
-+.|.| .++++.=++.++.+|+ ...+|+.|=.++.... -+++-+.....+++.+|+ ..-
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe-----~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk---sY~ 110 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPE-----FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK---SYG 110 (421)
T ss_pred HhccccchHHHHHHHHHHhhCch-----hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch---hHH
Confidence 344555 4677777777777887 6666666655444322 345556666777888888 778
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLA--KESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~--dEAL~d~~kALkl~~~ 522 (604)
+|+.|..++.+.+.. ..-++.+.++++.+++
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R 143 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR 143 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc
Confidence 888888888776654 5556677777777443
No 337
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.64 E-value=1e+02 Score=33.94 Aligned_cols=103 Identities=10% Similarity=-0.012 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH--cCCcHHHHHHHHHHHhcC--------
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM--LKKPEAAISDTTRALSLS-------- 483 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk--Lgdy~eAI~D~~rALeLd-------- 483 (604)
+.....++..+|+.++|..|...++..+..-|... ....+.+.+.+|.. .-+|.+|.+.++..+...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~---~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~ 207 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGRE---EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE 207 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh---hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence 45677888899999999999999999998634311 14677777777764 457888988888665421
Q ss_pred ----------------CC--CC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 484 ----------------KT--MS-----S----HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 484 ----------------Pd--~~-----~----n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+. .. . ...-++.-|.=....|+|++|+.-+-+++++
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00 00 0 1112333444456689999999998888886
No 338
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.40 E-value=56 Score=37.63 Aligned_cols=122 Identities=10% Similarity=0.002 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...+..+.-.|+-+.|+..++..++ +. .++.....+..+|.++.-+.+|..|-.++....+++ + +.+|
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~-~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-d---WS~a 338 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIP--IR-MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-D---WSHA 338 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-h---hhHH
Confidence 577788889999999999999999999998 43 678889999999999999999999999999988775 4 6777
Q ss_pred HHHH--HHHH--------HHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 493 LWRR--SQAY--------DMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 493 ~~rr--G~a~--------~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
+|.- |-|+ ...|+.+.|-..++...++..+ .+++.++...+-|-.++-.
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~--a~K~~P~E~f~~RKverf~ 397 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLAN--AGKNLPLEKFIVRKVERFV 397 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHh--ccccCchhHHHHHHHHHHh
Confidence 7763 2333 2245666665566555555332 2466667666655544433
No 339
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=7 Score=42.61 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
...+.+...++.+++..|+..-..+++.++. ....|+.|++.|..+.++++|+.+...+....|+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s-----~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERS-----KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChh-----hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 3445667778889999999999999998888 7899999999999999999999999999999999
No 340
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.36 E-value=1.1e+02 Score=34.44 Aligned_cols=96 Identities=20% Similarity=0.064 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH--HHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC--YLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~--ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+......+....-.|+|+.|-..|..-++ +|. ..++-.|+.- -..+|+++.|+.+..+|-..-|. -.-
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPE------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~---l~W 189 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPE------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ---LPW 189 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChH------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC---Cch
Confidence 45566677788889999999999976655 676 3444445543 34789999999999999999999 777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|..-.-.....-|+++.|++..+.....
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7777777888999999999977665544
No 341
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=57.53 E-value=75 Score=37.61 Aligned_cols=111 Identities=15% Similarity=0.058 Sum_probs=84.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
++-+..+++-..+-|.-+-...-|++|.+.|.+.|.+.|+..-.+.-..|.......+.-...+.|-..+.+||+..|.
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp- 582 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP- 582 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH-
Confidence 3344556677788888888888999999999999999887433334445555566666667899999999999998875
Q ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 487 SSHSKSLWR-RSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 487 ~~n~KA~~r-rG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+.|..|- -|+.-..-|....|+..|++|-..
T Consensus 583 -~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 583 -EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 26665554 467777778889999999987765
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.14 E-value=37 Score=34.44 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAI 473 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI 473 (604)
.++-....|. +|.+.|-++|+..|.++|++.+. ....++.++.-+|..|.++|+++.|-
T Consensus 140 t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALAT-YYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444 45577899999999999999776 34778999999999999999999873
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.10 E-value=1.3e+02 Score=33.00 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=68.6
Q ss_pred HHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------c-----CCC------------CCCCHHHHH
Q 046116 441 LDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS---------L-----SKT------------MSSHSKSLW 494 (604)
Q Consensus 441 Lel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe---------L-----dPd------------~~~n~KA~~ 494 (604)
|..+|- ....+...|.++..+|++..|-+.+++||= . ++. +.....|++
T Consensus 33 l~~~Py-----HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 33 LQKNPY-----HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 445666 778888888888888888888888888862 1 111 122456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCcc
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWP 548 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l 548 (604)
+..+.+...|-+.-|++.++-.+.++|.. +.-.+...+.-..-+.++-+|+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~---DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDE---DPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CcchhHHHHHHHHHhcCCHHHH
Confidence 88888888899999999888888886532 2234555555555555544443
No 344
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.99 E-value=29 Score=33.12 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046116 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510 (604)
Q Consensus 453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL 510 (604)
+.....+|...+..|+|.-|...++.++..+|+ |.++..-++.++..+|.-.++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~---n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD---NEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHhccCH
Confidence 456667889999999999999999999999999 9999999999999998765543
No 345
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=56.91 E-value=61 Score=36.90 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
......+.+.-+|.+|+|.+++-+-.=..++.|. +.+|.-.|.|.+...+|.+|...+...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3566778888999999999999988888999997 899999999999999999999887643
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=56.87 E-value=49 Score=40.14 Aligned_cols=89 Identities=17% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH----------HhcCCCC-------CCCHHHH
Q 046116 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA----------LSLSKTM-------SSHSKSL 493 (604)
Q Consensus 431 eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA----------LeLdPd~-------~~n~KA~ 493 (604)
-.++-.+++|+++...+.+-..-..|+|.|.-+...++.+.|+++|.++ |.-+|.. ....+.|
T Consensus 836 yQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred HHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 3444445555555444333345677888899899999999999999875 3334540 1122233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
---|+-+...|+.+.|+..|..|-..
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhh
Confidence 33588899999999999999888654
No 347
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.82 E-value=27 Score=39.14 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Cccc-------chHHHHHHHHHHHHHc--CCc-HHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRK-------ERIVLYSNRAQCYLML--KKP-EAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~-------~~a~l~~NRA~~ylkL--gdy-~eAI~D~~rA 479 (604)
......+.|..+|..|+|++|+..|+..|..-|- ..++ ....+....-...+.+ ++. +...++-++.
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 3445566899999999999999999999987543 1111 1111222221222222 221 2334445555
Q ss_pred Hh---------cCCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 480 LS---------LSKTMSSHSKSLWRRSQ-AYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 480 Le---------LdPd~~~n~KA~~rrG~-a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
++ |.|. |.-.-+|.|. ..++.++|.-|..-.++.|++.| ..++.....+++.+.
T Consensus 283 lELAAYFThc~LQp~---H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p------~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 283 LELAAYFTHCKLQPS---HLILALRSAMSQAFKLKNFITAASFARRLLELNP------SPEVAEQARKILQAC 346 (422)
T ss_dssp HHHHHHHCCS---HH---HHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHH
Confidence 54 4555 5444444443 56778999999999999999833 223444444444443
No 348
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=55.28 E-value=21 Score=47.16 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=53.8
Q ss_pred CcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHH
Q 046116 108 QNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAV 176 (604)
Q Consensus 108 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~ 176 (604)
.+.-+-.+|+..||..+-...+-...-+++|+||||++||+.. +---|.-|+.||+-|+.++..-.++
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4445567899999998877777677778999999999999765 4466788999999999987655543
No 349
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.49 E-value=23 Score=38.91 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHH
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAIS 474 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~ 474 (604)
..+.+..+...|+..+.+++|++|...|..|..++.. ..+......++..|.++++++++..++-
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567889999999999999999999999999998754 1233456666777888888887766543
No 350
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.39 E-value=43 Score=31.82 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------cccchHHHHHHHHHHHHHcCCcHHHHHHHHHH----Hh
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK----------MRKERIVLYSNRAQCYLMLKKPEAAISDTTRA----LS 481 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~----------~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA----Le 481 (604)
.+...|+..++.+++-.||-.|.+|+.+..+. .-...+..-.|+|.-+..+|+.+-.+++++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999874321 00123455678999999999999999988765 55
Q ss_pred cCCC
Q 046116 482 LSKT 485 (604)
Q Consensus 482 LdPd 485 (604)
|-|.
T Consensus 83 LiPQ 86 (140)
T PF10952_consen 83 LIPQ 86 (140)
T ss_pred hccC
Confidence 6676
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.90 E-value=94 Score=35.84 Aligned_cols=79 Identities=16% Similarity=0.037 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--
Q 046116 429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMM-- 503 (604)
Q Consensus 429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~L-- 503 (604)
+++.|+..|.+|-+.... ...+++|.+|..-. ++..|...+..|... . +..|.+++|.+|..=
T Consensus 308 d~~~A~~~~~~aA~~g~~-------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--G---HILAIYRLALCYELGLG 375 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--C---ChHHHHHHHHHHHhCCC
Confidence 445555555555555432 44444555555443 344555555555443 2 445555555555432
Q ss_pred --CCHHHHHHHHHHHHhc
Q 046116 504 --GLAKESLMDALTFIGS 519 (604)
Q Consensus 504 --Gd~dEAL~d~~kALkl 519 (604)
-+...|...|+++.+.
T Consensus 376 v~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEK 393 (552)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 2445555555555554
No 352
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=2.1e+02 Score=31.50 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYS-NRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~-NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+.+.+.|.-+.+-||-+.|.+.+++..+..-.-..+.+..++. .+|..|....=..+-|+-++..++--.+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD------ 176 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD------ 176 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC------
Confidence 567889999999999999999999998887654433444555544 3467777766677888888888877666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|=|+-..-.-.|-|.-|+.+|..|-.+
T Consensus 177 -WeRrNRlKvY~Gly~msvR~Fk~Aa~L 203 (393)
T KOG0687|consen 177 -WERRNRLKVYQGLYCMSVRNFKEAADL 203 (393)
T ss_pred -hhhhhhHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333344555555555555554
No 353
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.40 E-value=46 Score=40.16 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.++-++.-|+.+|++|+|++|+..|-++|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4567889999999999999999999999875
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.43 E-value=32 Score=22.56 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHH
Q 046116 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRA 460 (604)
Q Consensus 428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA 460 (604)
|+++.|...|++++...|. ...+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-----~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPK-----SVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-----ChHHHHHHH
Confidence 5678888999999999987 777777554
No 355
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=51.94 E-value=27 Score=46.18 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
++..|--|=-.|+-+|..|+=+..+.-..-|..|.||||++||+..=+=| |+-|..||+.|++
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL~nL~~ 680 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARALAALSR 680 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHHHHHHh
Confidence 33444445567999999999999999999999999999999999876655 8889999999996
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.86 E-value=8e+02 Score=33.62 Aligned_cols=102 Identities=9% Similarity=-0.038 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+.|+++...--...+..+-|-.+++++-. +|+ .+.....+|.+.|..-.+.|+++-|-...-.|.+..+. +
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~-~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-----~ 1703 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN-LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-----E 1703 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-----h
Confidence 34444444333333356666666666542 454 56668999999999999999999999999999988866 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++..+|+.+-..|+...|+..+++.++.+..
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999977443
No 357
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=51.59 E-value=46 Score=32.59 Aligned_cols=70 Identities=10% Similarity=-0.075 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
-...+..+|.-|.+.|++++|++.+.++.+-..........+++.-.+....|++......+.++-....
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999998886655333567788899999999999999999888888743
No 358
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=51.05 E-value=98 Score=36.73 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
+.+++..+..|..+.+ +..|+..+-+..|++|+.. +|....--...+|...|..|-..|+.+.|-..+++|++.+-.
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 4445555666655543 4578899999999999974 776444446789999999999999999999999999998754
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 486 M-SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ~-~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
. ......|..-|..-....+++.|+...+.|.-.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 1 123566777787778888889999988888776
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.76 E-value=1.3e+02 Score=36.83 Aligned_cols=92 Identities=20% Similarity=0.113 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-CC--
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS-SH-- 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~-~n-- 489 (604)
.++..--.|.....+|++++|++.-+.++..-|....-....++++.+.+..-.|++++|......+.++..... .+
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 455556677888899999999999999999998866666889999999999999999999999999988743210 02
Q ss_pred HHHHHHHHHHHHHcC
Q 046116 490 SKSLWRRSQAYDMMG 504 (604)
Q Consensus 490 ~KA~~rrG~a~~~LG 504 (604)
.-+.+..+.++...|
T Consensus 537 ~~~~~~~s~il~~qG 551 (894)
T COG2909 537 LWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334566788899999
No 360
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.73 E-value=99 Score=39.07 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=89.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
..++...++.+.+...|..++-..|+..+.++..+.-- +.++.-+.+..|.++.+..+++++.|+.....|++++-.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 34667888888888999999999999999999886210 123337888899999999999999999999999986533
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 486 -----MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 486 -----~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.-.++..+..+++.+..++++..|+...+....+...
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 1225566777888888888888888887777776444
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.85 E-value=1.6e+02 Score=35.99 Aligned_cols=106 Identities=16% Similarity=-0.041 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC--
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS-- 487 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~-- 487 (604)
+.-....+-.+..+.+|.+|-....++-..-|. ......+..-.-+|.+-+..|++++|++.++.+++.=|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 444556777888899999999998888776443 23445677888899999999999999999999999887732
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...-++...|.+..-.|++++|+...+.+.+.
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 24556777899999999999999998888877
No 362
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.55 E-value=1.9e+02 Score=32.11 Aligned_cols=63 Identities=11% Similarity=-0.088 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc--CCcHHHHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--KKPEAAISDTT 477 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--gdy~eAI~D~~ 477 (604)
.....++..+|+.++|..|...|.+++...+..........+.+++.+|..- -++++|.+.++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3444567789999999999999999999865422334677888888888754 47788888887
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.13 E-value=1.8e+02 Score=33.49 Aligned_cols=95 Identities=17% Similarity=0.050 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAG---YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML----KKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL----gdy~eAI~D~~rALeLdPd 485 (604)
........|..++... |+..|.++|..|.... ...+..+.|.||..= .+...|...+++|-+..+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~- 395 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN- 395 (552)
T ss_pred CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-
Confidence 4445666677666554 6789999999998875 457888889998753 478999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 046116 486 MSSHSKSLWRRSQAYDMM-GLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~L-Gd~dEAL~d~~kALkl 519 (604)
+.|.+.++..+..- +.++.++..+......
T Consensus 396 ----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 396 ----PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred ----hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 46888888877666 8888888877666655
No 364
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=47.80 E-value=37 Score=39.20 Aligned_cols=71 Identities=17% Similarity=0.010 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 410 NELSVFMLKQQGNQEFW---AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk---~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+....-+-+++..+++ .|+.-.|+.....|++++|. ...+|+.++.++..++++.+|+++...+....|.
T Consensus 404 ~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-----~~kah~~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 404 VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-----IQKAHFRLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-----HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 33445556666666654 45778899999999999999 8999999999999999999999999888888884
No 365
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=47.58 E-value=1.2e+02 Score=36.64 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred HHHhccChHH-HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 397 KKEKLMSDEE-MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 397 ~~E~~ms~ed-lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
+..+.++--+ ++........+-.-+..|...|+|+-|.+.|+++=... .--..|-+.|+|.+|...
T Consensus 747 ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~-------------dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK-------------DAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH-------------HHHHHHhccccHHHHHHH
Confidence 4444444333 33333344456667777888899999999998763322 123456777888888776
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
..+... |. .-...|...++-+...|+|.||.+.|
T Consensus 814 a~e~~~--~e--~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG--PE--ATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC--ch--hHHHHHHHhHHhHHhhcchhhhhhee
Confidence 665543 22 02345566666677777777766554
No 366
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.26 E-value=55 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+...|.--...|+|++|+..|..+++.+..
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 444555566679999999999999999876
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.25 E-value=29 Score=31.99 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
.-.|+++|+++..+.|. .+..++++|.=+-....|+++..-|+++|.+.
T Consensus 60 Ll~sve~~s~a~~Lsp~-----~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPD-----SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHhHHHHHHHhccChh-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 46789999999999999 78888888888777788999999999999864
No 368
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.82 E-value=37 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.+..+..+|...=..|+|++|...|..+|+.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4666777778888889999999999999886
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.07 E-value=1.7e+02 Score=31.22 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116 435 KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK------------PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 435 e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd------------y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~ 502 (604)
..|++.+.-+|. +..+|.....-.-.+-. .+.-++.+++||+.+|+ +.+.+..+-.+..+
T Consensus 6 ~el~~~v~~~P~-----di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---~~~L~l~~l~~~~~ 77 (321)
T PF08424_consen 6 AELNRRVRENPH-----DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---SERLLLGYLEEGEK 77 (321)
T ss_pred HHHHHHHHhCcc-----cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 457888888998 88888877765555533 45678899999999999 99998888888889
Q ss_pred cCCHHHHHHHHHHHHhchhh
Q 046116 503 MGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 503 LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+.++-.+.+++++...++
T Consensus 78 ~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 78 VWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred hCCHHHHHHHHHHHHHHCCC
Confidence 99999989999999998443
No 370
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.88 E-value=3.4e+02 Score=27.59 Aligned_cols=102 Identities=9% Similarity=-0.106 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hcCCCCCCCHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL-SLSKTMSSHSKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL-eLdPd~~~n~KA 492 (604)
+......|....++|+-.+|+..|+++-.-.|.. ....-.+...-|..+...|-|++-.+-.+..- .-+|- ...|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m---R~sA 169 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM---RHSA 169 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh---HHHH
Confidence 5667788899999999999999999988776541 11112334444566777788887665544321 11222 4556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.--+|.+-++-|++..|.+.|....+-
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666899999999999999999988773
No 371
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.79 E-value=72 Score=27.37 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+.++|.-....|+|++|+..|..+++.+..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4555566666668999999999999988654
No 372
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.18 E-value=3.2e+02 Score=27.87 Aligned_cols=97 Identities=15% Similarity=0.017 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc----C---CcHHHHHHHHHHHhc
Q 046116 414 VFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML----K---KPEAAISDTTRALSL 482 (604)
Q Consensus 414 A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL----g---dy~eAI~D~~rALeL 482 (604)
+......|..++. ..|+.+|...|.+|.+..-.. -.....+++.+|..- + +...|+..+.+|-..
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~----a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE----AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh----HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 4456667777776 459999999999999985430 134466677777764 1 233788888888877
Q ss_pred CCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 483 SKTMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
. +..+.+++|.+|.. -.++.+|..-|.++-+.
T Consensus 185 ~-----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 185 G-----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred c-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 6 56899999987755 34889999999999988
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.91 E-value=34 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 457 SNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 457 ~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
.++|.+|+.+|+++.|..-.+.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 374
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.80 E-value=1.5e+02 Score=26.60 Aligned_cols=53 Identities=17% Similarity=0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK 468 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd 468 (604)
.+.+.....+|-..+-.|||..|.+...++-+..+. ....|..-|.+-..+||
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~-----~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN-----PLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHcCC
Confidence 345778889999999999999999999999887666 45555555666666554
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=1.2e+02 Score=32.75 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHH----------HHHHHHHH-----
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEA----------AISDTTRA----- 479 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~e----------AI~D~~rA----- 479 (604)
.+.+|.+.+.+++++||..|.+.+...-. ....+.-....+++..|...|++.. +..++.++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 46788889999999999999999876221 1122345566778889988887654 33333221
Q ss_pred ----HhcCCCCCCCH------------------HHH------HHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC
Q 046116 480 ----LSLSKTMSSHS------------------KSL------WRRSQAYDMMGLAKESLMDALTFIGSRMKCKH 525 (604)
Q Consensus 480 ----LeLdPd~~~n~------------------KA~------~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d 525 (604)
++.-|....+. +.+ ..+..+|+..|.|.+|+......+....+-++
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 12222210011 112 34678899999999999988877766554443
No 376
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.32 E-value=5.3e+02 Score=31.09 Aligned_cols=51 Identities=6% Similarity=-0.134 Sum_probs=37.2
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 463 YLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 463 ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+...++|.+|...+++--++-|+ .|+.-|+-+....+|+||-+.|.+|=+.
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~d------Vy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDD------VYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred eeecccchHhHhhhhhCcccccc------ccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 34445677777777666666665 6778888888899999998888776544
No 377
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=59 Score=34.95 Aligned_cols=54 Identities=11% Similarity=-0.030 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 458 NRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 458 NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
.-+.-.+..|++.+|..-+..++..+|+ +.++..-++.+|...|+.++|...+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466778889999999999999999999 99999999999999999998876643
No 378
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.20 E-value=73 Score=27.39 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+..+|.-+...|++.+|+..|++++++..+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345666667777778888888888888887444
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.95 E-value=1.2e+02 Score=33.39 Aligned_cols=87 Identities=16% Similarity=0.056 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Q 046116 426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL 505 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd 505 (604)
..-+|..-..+|+-...+.|+ +++-.|||.+.-+..-...++.-...... +|.-..+.-.+--||-.+..+|+
T Consensus 308 edtDW~~I~aLYdaL~~~apS------PvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr 380 (415)
T COG4941 308 EDTDWPAIDALYDALEQAAPS------PVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGR 380 (415)
T ss_pred CCCChHHHHHHHHHHHHhCCC------CeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCC
Confidence 344788888888888888887 78888999999888888888877665544 33212255667779999999999
Q ss_pred HHHHHHHHHHHHhc
Q 046116 506 AKESLMDALTFIGS 519 (604)
Q Consensus 506 ~dEAL~d~~kALkl 519 (604)
.+||...|++++.+
T Consensus 381 ~~eAr~aydrAi~L 394 (415)
T COG4941 381 VEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999999999
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.28 E-value=66 Score=23.57 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=9.0
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMD 512 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d 512 (604)
++-.|-.++..|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.09 E-value=80 Score=34.16 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
-+-..+..+...|.+.+|+++-++++.++|- +...+.-+-+.+..+||--.|++.+.+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-----~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-----SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-----hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566788999999999999999999998 7788888888999999988888777653
No 382
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=40.51 E-value=37 Score=26.03 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=33.7
Q ss_pred hhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhh
Q 046116 116 AAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHL 166 (604)
Q Consensus 116 ~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~ 166 (604)
|+..||.--=...+. ..-....++|.|+.+|+-.=.=| +..|++|||-|
T Consensus 7 A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~V-R~~A~~aLg~l 55 (55)
T PF13513_consen 7 AAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSV-RAAAAWALGNL 55 (55)
T ss_dssp HHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHCH
T ss_pred HHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHhcC
Confidence 566777622222233 33366789999999998877766 77889999864
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.86 E-value=2.8e+02 Score=32.25 Aligned_cols=108 Identities=14% Similarity=0.023 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CC
Q 046116 412 LSVFMLKQQGNQEF-WAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SS 488 (604)
Q Consensus 412 ~~A~~lk~~GN~lf-k~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~ 488 (604)
.++......|..++ .-.+++.|..+.++++.++.. ...+....+.+-.+.+|.+.+... |+..++++|+.-.+. ..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 35788888999988 668999999999999999743 233334555666689999988877 999999999865441 11
Q ss_pred CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhch
Q 046116 489 HSKSLWRRS--QAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 489 n~KA~~rrG--~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
...-.|+.- ..+...+++..|+..++......
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 233334433 22223379999999999888873
No 384
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.61 E-value=81 Score=26.93 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+..+|.-....|+|++|+..|..+|+.+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344566677777778999999988888887544
No 385
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=38.86 E-value=1.6e+02 Score=34.53 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=70.5
Q ss_pred HHcCCHHH-HHHHHHHHHHhCCCCcccchHHHHHH--HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 046116 425 FWAGYIEE-AVKKYSKALDLCPLKMRKERIVLYSN--RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYD 501 (604)
Q Consensus 425 fk~Gdyee-AIe~YtkALel~P~~~~~~~a~l~~N--RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~ 501 (604)
+..++... |+..|...+.++|. +..++.. ++..+..+++...++--...++..+|+ +.+++..++.+..
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~-----~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~L~~ale 112 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDV-----NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE---NCPAVQNLAAALE 112 (620)
T ss_pred hcccCchhHHHHHHHccCccCCC-----CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc---cchHHHHHHHHHH
Confidence 34444444 78888888888888 5555332 588888999999999999999999999 9999999999999
Q ss_pred HcCCHHHHHHHHHH-HHhc
Q 046116 502 MMGLAKESLMDALT-FIGS 519 (604)
Q Consensus 502 ~LGd~dEAL~d~~k-ALkl 519 (604)
..|....++.++.. +...
T Consensus 113 ~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 113 LDGLQFLALADISEIAEWL 131 (620)
T ss_pred HhhhHHHHHHHHHHHHHhc
Confidence 99999888888776 6666
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.80 E-value=97 Score=35.64 Aligned_cols=91 Identities=16% Similarity=0.015 Sum_probs=41.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116 423 QEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 423 ~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~ 502 (604)
..-..|+|+.|....+-+-..-.. -.....-|-....+++++++|.+.+...|.-.-. ..+..---+-.-..
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s-----~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie---~~ei~~iaa~sa~~ 403 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGT-----TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE---DEEVLTVAAGSADA 403 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcC-----CchHHHHHHHhhhchhhHHHHHHHHHHHhccccC---ChhheeeecccHHH
Confidence 333445666665555444333222 1111112223345566666666665555543322 22222222333445
Q ss_pred cCCHHHHHHHHHHHHhchh
Q 046116 503 MGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 503 LGd~dEAL~d~~kALkl~~ 521 (604)
+|-+++|+...++.+.+.+
T Consensus 404 l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 404 LQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HhHHHHHHHHHHHHhccCC
Confidence 5556666666666665533
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.12 E-value=1.6e+02 Score=30.86 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=53.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
...+.+.+..++||.....-++-.|. ++....-+-+.|.-.|+|++|...++-+-+++|+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-----da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-----DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-----cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34677888999999999999999999 7777777788899999999999999999999999
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.59 E-value=91 Score=33.51 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=37.3
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 466 LKKPEAAISDTTRALSLSKTMSS-HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 466 Lgdy~eAI~D~~rALeLdPd~~~-n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
..++++|++.+.+++++.|.... -.||+-.+-++++.+|+|++-+..|++.+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34677777777888777776211 2567777777777788877777777666554
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.21 E-value=1.2e+02 Score=38.53 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS---- 483 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd---- 483 (604)
++.+..+...+..+...|++++|+..-.+|.-+... .........|.|++...+..++...|+..+.++..+.
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 456778888999999999999999998888765321 1122378899999999999999999999999998763
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 484 -KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 484 -Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|+.++-+-...+.+..+..+++++-|+...+.|++.
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 221114555678889999999999999999999986
No 390
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=1.1e+02 Score=36.35 Aligned_cols=69 Identities=12% Similarity=-0.082 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..++-|-|.-++++.+|..++..|...+.--|.. ...+|..-.++.||..+.+.|.|++.+++|=+.++
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 4555567999999999999999999999876652 23688888899999999999999999999998854
No 391
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.97 E-value=1.5e+02 Score=30.07 Aligned_cols=47 Identities=19% Similarity=0.065 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML 466 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL 466 (604)
...--..|-..++.|+|..|...|.+..+ +.. .+..-.|||++.+.+
T Consensus 167 ~sArEALglAa~kagd~a~A~~~F~qia~-Da~-----aprnirqRAq~mldl 213 (221)
T COG4649 167 HSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQ-----APRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHhHHHHhccchHHHHHHHHHHHc-ccc-----CcHHHHHHHHHHHHH
Confidence 44555678888999999999999888776 444 466677788776654
No 392
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.58 E-value=1.4e+02 Score=31.30 Aligned_cols=59 Identities=12% Similarity=-0.098 Sum_probs=50.8
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 461 QCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 461 ~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+++-+...+||.+...-++-+|. +.-...-+=+.|.-.|+|+.|+..++-+-.+.++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3567788999999999999999999 6666666678899999999999999999999543
No 393
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.81 E-value=3.4e+02 Score=31.51 Aligned_cols=99 Identities=18% Similarity=0.045 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCC
Q 046116 413 SVFMLKQQGNQEF-WAGYIEEAVKKYSKALDLC---PLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 413 ~A~~lk~~GN~lf-k~GdyeeAIe~YtkALel~---P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeLdPd~~ 487 (604)
.+....+.|..+| -..|++-|-....+|..+. |. .-.+....++.+|.+|.... .+..|-.-.++|+++..+.+
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~-fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS-FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc-HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 4666777777765 5678999999999999874 33 22456778899999999998 89999999999999987721
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHH
Q 046116 488 -SHSKSLWRRSQAYDMMGLAKESLMD 512 (604)
Q Consensus 488 -~n~KA~~rrG~a~~~LGd~dEAL~d 512 (604)
-+-+..+.+++.+.-..++.-|++.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 1347788999999999999998876
No 394
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=34.90 E-value=6.8e+02 Score=27.87 Aligned_cols=102 Identities=8% Similarity=-0.150 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhc-CCCCCCCH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM---LKKPEAAISDTTRALSL-SKTMSSHS 490 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk---Lgdy~eAI~D~~rALeL-dPd~~~n~ 490 (604)
+...+.=-.+-.-.+|+.-|......=. -|...-.....+-...|.++.+ .|+.++|+..+..++.- .+. .+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~ 217 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP---DP 217 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---Ch
Confidence 3344444455666777777766654433 3331122256667778888888 99999999999996544 344 77
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhch
Q 046116 491 KSLWRRSQAYDMM---------GLAKESLMDALTFIGSR 520 (604)
Q Consensus 491 KA~~rrG~a~~~L---------Gd~dEAL~d~~kALkl~ 520 (604)
+.+--.|.+|-.+ ...+.|+..|.++.+..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 8888888887544 24688999999999984
No 395
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.72 E-value=2.1e+02 Score=32.68 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CcccchHHHHHHHHHHHHHcCCc---HHHHHH---HHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC----PL--KMRKERIVLYSNRAQCYLMLKKP---EAAISD---TTRAL 480 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~----P~--~~~~~~a~l~~NRA~~ylkLgdy---~eAI~D---~~rAL 480 (604)
.+.-+.+.|.+++....|.+|+...-.|=+.. |. +.-..++.+-...--||+.+++. .+|..- |++.+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 45678889999999999999998887775542 21 11111555555667799988763 233322 22222
Q ss_pred h------------cCCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 481 S------------LSKTMSSHSKSL-----WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 481 e------------LdPd~~~n~KA~-----~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
. +..... --+|+ +--|...++.|+-++|.+.++.+......
T Consensus 242 ~~syGenl~Rl~~lKg~~s-pEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQS-PERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhHhhhhccCCCC-hhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 2 221111 12333 33489999999999999999998776443
No 396
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=34.65 E-value=81 Score=37.76 Aligned_cols=113 Identities=22% Similarity=0.321 Sum_probs=82.1
Q ss_pred cchhhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCC
Q 046116 60 EHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGV 139 (604)
Q Consensus 60 ~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~ 139 (604)
-.+++++.|++.+...-|--+..+.||++-..+|+.-+ |.. -++ =+-.++..-+.+.+- -.+=|+.|+
T Consensus 306 llil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~--~~~----l~~-----~aLrlL~NLSfd~~~-R~~mV~~Gl 373 (708)
T PF05804_consen 306 LLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE--NED----LVN-----VALRLLFNLSFDPEL-RSQMVSLGL 373 (708)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC--CHH----HHH-----HHHHHHHHhCcCHHH-HHHHHHCCC
Confidence 34468999999999888888889999999999998642 211 112 266888888888765 557899999
Q ss_pred cHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHH
Q 046116 140 VLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKN 189 (604)
Q Consensus 140 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~ 189 (604)
||+|++||.-. ++ +.+|++.|-||..-|.+-..++ +. +.++.-|+
T Consensus 374 IPkLv~LL~d~-~~--~~val~iLy~LS~dd~~r~~f~-~T-dcIp~L~~ 418 (708)
T PF05804_consen 374 IPKLVELLKDP-NF--REVALKILYNLSMDDEARSMFA-YT-DCIPQLMQ 418 (708)
T ss_pred cHHHHHHhCCC-ch--HHHHHHHHHHhccCHhhHHHHh-hc-chHHHHHH
Confidence 99999999842 33 3689999999998776554443 33 34444343
No 397
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.38 E-value=4.5e+02 Score=25.70 Aligned_cols=91 Identities=12% Similarity=-0.061 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCC-H
Q 046116 453 IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVK-I 531 (604)
Q Consensus 453 a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~-i 531 (604)
...+.....+-+..++.+++..-....=-+.|+ ....-.--|..+...|+|+||+..++...+. ....+ -
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~~ 80 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPYG 80 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchHH
Confidence 344455556666688999998888888889999 8888889999999999999999999988776 22222 2
Q ss_pred HHHHHHHHHHHHhcCccchHH
Q 046116 532 PYYAAVMINKQMNATWPFIHA 552 (604)
Q Consensus 532 ~~~l~rlikKqk~~~~l~~ea 552 (604)
.....-.+.-.....|.....
T Consensus 81 kAL~A~CL~al~Dp~Wr~~A~ 101 (153)
T TIGR02561 81 KALLALCLNAKGDAEWHVHAD 101 (153)
T ss_pred HHHHHHHHHhcCChHHHHHHH
Confidence 333444455555566665433
No 398
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=33.65 E-value=4.8e+02 Score=30.09 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 046116 427 AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLA 506 (604)
Q Consensus 427 ~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~ 506 (604)
+.+-..|++-|..||..+|... ...+...+..+....++-...+..|+.++..||. ||--.+.++.-.+.-.
T Consensus 325 NdrrR~Ale~ylaALqa~pprp---~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk-----kAaqmk~qV~thLrvI 396 (615)
T KOG3540|consen 325 NDRRRDALENYLAALQADPPRP---HRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK-----KAAQMKSQVMTHLRVI 396 (615)
T ss_pred hhHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHH
Confidence 3456789999999999998821 3455555666667777888899999999999998 5655666766666555
Q ss_pred HHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 507 KESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 507 dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
++=+..-...|...|.- ...++..+..++.....
T Consensus 397 eeR~NqsLslL~~~P~v----aqeirdev~ell~~e~~ 430 (615)
T KOG3540|consen 397 EERINQSLSLLYDVPAV----AQEIRDEVDELLQVEDS 430 (615)
T ss_pred HHHhcchhHHHhcChHH----HHHHHHHHHHHHhhhhc
Confidence 44433322222222211 12345555555555444
No 399
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.55 E-value=2e+02 Score=32.70 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
.....|.+.++-+-|+..--+.|.++|. ...-|..+|.|+..+.+|.+|-..+.-|.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~-----~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPS-----YFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999 88899999999999999999988776664
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.35 E-value=65 Score=36.00 Aligned_cols=62 Identities=24% Similarity=0.213 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
-....+.-.|||..|++..+- |+++.. ....-...+++..|.||+.+++|.+||..+...|-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333556678999999887532 222211 11223677899999999999999999999998873
No 401
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.24 E-value=2.3e+02 Score=32.79 Aligned_cols=86 Identities=9% Similarity=-0.093 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-HHHH
Q 046116 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL-AKES 509 (604)
Q Consensus 431 eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd-~dEA 509 (604)
..-+..|..|+...+. ++.+|.+-..--.+-+.+.+--..|.+++..+|+ ++..|.--|.=.+..+. .+.|
T Consensus 88 ~rIv~lyr~at~rf~~-----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNG-----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHH
Confidence 4557889999999987 7999998766666666799999999999999999 99999999988888888 8888
Q ss_pred HHHHHHHHhchhhcC
Q 046116 510 LMDALTFIGSRMKCK 524 (604)
Q Consensus 510 L~d~~kALkl~~~~~ 524 (604)
..-|.++|+.+|+..
T Consensus 160 RalflrgLR~npdsp 174 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSP 174 (568)
T ss_pred HHHHHHHhhcCCCCh
Confidence 899999999977653
No 402
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.17 E-value=5.3e+02 Score=32.06 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHH--HHHHHHHHH-----H-----c--CCcHHH-
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVL--YSNRAQCYL-----M-----L--KKPEAA- 472 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l--~~NRA~~yl-----k-----L--gdy~eA- 472 (604)
........++|..+...|+|.+|+++|..+|-.-|- ..+++-+.+ +...+.-|+ . + .....+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 345667788999999999999999999999987664 111111111 111121121 1 1 223333
Q ss_pred -HHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 473 -ISDTTRALSLSKTMSSHSK-SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 473 -I~D~~rALeLdPd~~~n~K-A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..|-.-..|.|- |.- |+.---.++++++++..|-.-..+.+++
T Consensus 1068 ElAaYFt~~~Lqp~---H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel 1113 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPM---HRILALRTAMNVFFKLKNLKTAAEFARRLLEL 1113 (1202)
T ss_pred HHHHHhhcCCCCcH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 3333333466776 543 3333346889999999999999999998
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.27 E-value=1.4e+02 Score=29.02 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
-+..++...+.+...|+ +..+.+.+.++..+|+.++|.....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P~------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD------PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555666666777786 788888888888888888888888888888884
No 404
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=32.22 E-value=38 Score=28.84 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=33.1
Q ss_pred CCCCccchhHHHhhHHHHHHHHHhhcCCchhhHHHHHHHHHhhcCcchHHHHHHH
Q 046116 280 HTSPAGIGLIRAFLKNVIESVCNVSRSSDDWQYAAIDSLLLLLKDPDTRYEVIDI 334 (604)
Q Consensus 280 ~~sp~g~g~~~~~~~~~~~~lc~~~rssd~wq~~~idcll~Ll~dr~T~y~algk 334 (604)
++||.|+.++. ..++++.+.+++.+++.|.= |+|-+.||+-
T Consensus 15 gss~~G~~lL~--~~~iv~~iv~~a~~s~v~si------------RGT~fy~Lgl 55 (73)
T PF14668_consen 15 GSSPLGIQLLD--ESDIVEDIVKIAENSPVLSI------------RGTCFYVLGL 55 (73)
T ss_pred hcChHHHHHHh--hcCHHHHHHHHHHhCCccch------------HHHHHHHHHH
Confidence 57999999998 67899999999999887753 6666666554
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.00 E-value=1.4e+02 Score=29.10 Aligned_cols=48 Identities=19% Similarity=0.010 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 470 EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 470 ~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
...++...+.++..|+ +..+.+.+.++...|+.++|.....++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3456667778888887 77899999999999999999999999999966
No 406
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.95 E-value=1.1e+02 Score=24.82 Aligned_cols=31 Identities=23% Similarity=0.079 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+...|.-....|++++|+..|..+++...
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455667777777899999999999988744
No 407
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.75 E-value=3.3e+02 Score=34.33 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----------
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS----------- 483 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd----------- 483 (604)
..+..-|+.+|..|.|+.|--+|+ +.+-|..+|..+..+|+|..|...+++|-...
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~-------------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS-------------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 356788999999999999998884 46778889999999999999999999884321
Q ss_pred CCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 484 KTM-----------SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 484 Pd~-----------~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
... --++.-+-.+..-|...|-|+|-+..++.+|.+ +....++-.++.-+..|-
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-----ERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-----ERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-----hHHHHHHHHHHHHHHHhc
Confidence 110 002222333344466778888888888888877 223445555555555443
No 408
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.87 E-value=2.5e+02 Score=31.73 Aligned_cols=81 Identities=23% Similarity=0.119 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...|+..|..+..+|+++-|.++|.++=+. ..+...|.-.|+-+.=.+-.+.|.. ..+ +--+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------~~L~lLy~~~g~~~~L~kl~~~a~~-~~~---~n~a- 408 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKDF-------------SGLLLLYSSTGDREKLSKLAKIAEE-RGD---INIA- 408 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-------------HHHHHHHHHCT-HHHHHHHHHHHHH-TT----HHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-------------cccHHHHHHhCCHHHHHHHHHHHHH-ccC---HHHH-
Confidence 459999999999999999999999875332 2234556666664333333333332 222 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~k 515 (604)
=.++..+|+.++.++.+.+
T Consensus 409 ---f~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 409 ---FQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHcCCHHHHHHHHHH
Confidence 2456666766666655443
No 409
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.82 E-value=79 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHhcCCC
Q 046116 469 PEAAISDTTRALSLSKT 485 (604)
Q Consensus 469 y~eAI~D~~rALeLdPd 485 (604)
|+.|....++||+.+-.
T Consensus 5 ~~~A~~~I~kaL~~dE~ 21 (79)
T cd02679 5 YKQAFEEISKALRADEW 21 (79)
T ss_pred HHHHHHHHHHHhhhhhc
Confidence 44444444444444444
No 410
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.28 E-value=2.4e+02 Score=33.97 Aligned_cols=145 Identities=23% Similarity=0.387 Sum_probs=94.3
Q ss_pred HHHHHhhhCCCCCCCCCccchh---hhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhh--ccCCcccchhhh
Q 046116 42 KVAQCFKELPLSRLRDDQEHVL---VLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWL--LRDQNIYIPYYA 116 (604)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~--~~~~~~~~~yy~ 116 (604)
-+.++.|-+.. -+...+.+ .|+-|=++ .++++++|| .+||++-|=-=.+.|.+|- .+.. =+||+-.
T Consensus 469 lLlKlIRNiS~---h~~~~k~~f~~~i~~L~~~-v~~~~~ee~----~vE~LGiLaNL~~~~ld~~~ll~~~-~llp~L~ 539 (708)
T PF05804_consen 469 LLLKLIRNISQ---HDGPLKELFVDFIGDLAKI-VSSGDSEEF----VVECLGILANLTIPDLDWAQLLQEY-NLLPWLK 539 (708)
T ss_pred HHHHHHHHHHh---cCchHHHHHHHHHHHHHHH-hhcCCcHHH----HHHHHHHHHhcccCCcCHHHHHHhC-CHHHHHH
Confidence 34556666655 23222222 33444444 566777764 6899998887777888885 4433 3577766
Q ss_pred hhh----------------hhhhccchHHHHHHHHhcCCcHHHHHHhcccch---hhHHHHHHHHhhhhhhcccchHHHH
Q 046116 117 AHI----------------IGSYTMNKAHFAEKAVKSGVVLPLMELLRGKIS---WVEERVAVRALGHLASHDKTFEAVA 177 (604)
Q Consensus 117 ah~----------------~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~---wve~r~~~r~l~h~a~~~~~f~~~~ 177 (604)
-+. +|+-.+ -++-|...+++|+|+.|++||+.|-- -|=|= +=++.++-.|+.|.+.+-
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi--l~~f~~ll~h~~tr~~ll 616 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI--LYVFYQLLFHEETREVLL 616 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHH--HHHHHHHHcChHHHHHHH
Confidence 554 453332 34678888899999999999999863 33332 346889999999999987
Q ss_pred hhHHHHHHHH-----------HHHHhhhHHHHH
Q 046116 178 LYEVEIIELA-----------KNIACNCFEVVY 199 (604)
Q Consensus 178 ~~~~~~~~~~-----------~~~~~~~~~~~~ 199 (604)
.+. +++.-= -+.|.+||++|=
T Consensus 617 ~~~-~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 617 KET-EIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred hcc-chHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 654 554322 245677787763
No 411
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.93 E-value=3.8e+02 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHH
Q 046116 453 IVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYDM 502 (604)
Q Consensus 453 a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~~ 502 (604)
+...+++|..|.. ..++.+|...+.+|.+.... . ..+.+++|..|..
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~---~a~~~~~~l~~~~~~ 160 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV---EAALAMYRLGLAYLS 160 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHc
Confidence 4455555555554 33555555555555554322 1 1225555555544
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.92 E-value=8.3e+02 Score=26.72 Aligned_cols=110 Identities=14% Similarity=-0.063 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-- 486 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-- 486 (604)
++..--..+......+-++|-|..|.+...-.+.++|.+ +-..++.-.=..-++.++|+--|..++.........
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~---DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~ 174 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE---DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL 174 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC---CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh
Confidence 344456677788888899999999999999999999982 122233333445566778877777777655421110
Q ss_pred CCCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhchh
Q 046116 487 SSHSKSLWRRSQAYDMMGLA---------------KESLMDALTFIGSRM 521 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~---------------dEAL~d~~kALkl~~ 521 (604)
...+.--|-.+.|++.+++- +.|-..+++|+...|
T Consensus 175 ~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 175 SLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 00112557788999999998 899999999988744
No 413
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=27.56 E-value=1.8e+02 Score=24.69 Aligned_cols=30 Identities=13% Similarity=-0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+|.-....|+|++|+..|..+++....
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444458899999999999887554
No 414
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.55 E-value=79 Score=34.51 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHH-HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN-RAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~N-RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
..+.-|.+-.+-..+.|-|.+--..|.+++...|. ++.+|.. -+.-|...++++.|-.-+.++|+++|+ ++
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-----nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~---~p 176 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-----NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR---SP 176 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CceeeeeeccchhhhhccHHHHHHHHHhhhccCCC---Cc
Confidence 34556667777777888899999999999999999 8888876 345677789999999999999999999 55
Q ss_pred H---HHHHHHHHH
Q 046116 491 K---SLWRRSQAY 500 (604)
Q Consensus 491 K---A~~rrG~a~ 500 (604)
+ +|+|+-..|
T Consensus 177 ~iw~eyfr~El~y 189 (435)
T COG5191 177 RIWIEYFRMELMY 189 (435)
T ss_pred hHHHHHHHHHHHH
Confidence 4 445544333
No 415
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.96 E-value=1.2e+02 Score=26.37 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.|....++|-.+=..|+.+.|+.+|.++|..
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555566666555553
No 416
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=26.92 E-value=66 Score=26.44 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=36.4
Q ss_pred cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhh
Q 046116 106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALG 164 (604)
Q Consensus 106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~ 164 (604)
+|.|..|=..|+..+|-+. ...++|.|.+++.--=.++=++.|+.|||
T Consensus 41 ~d~~~~vr~~a~~aL~~i~-----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 41 KDEDPMVRRAAARALGRIG-----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCH-----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4455567778888888652 23489999999988778888899999997
No 417
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.85 E-value=7.6e+02 Score=25.93 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc----HHHHH-HHHH-HHhc
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP----EAAIS-DTTR-ALSL 482 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy----~eAI~-D~~r-ALeL 482 (604)
...+.+......-+.+...|+|..|++.+.+.-..--. ...+..-+ ..-.++.+. ++.++ ++.+ +...
T Consensus 122 ~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~-----l~~~~c~~-~L~~~L~e~~~~i~~~ld~~l~~~~~~F 195 (291)
T PF10475_consen 122 EQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEE-----LKGYSCVR-HLSSQLQETLELIEEQLDSDLSKVCQDF 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----cccchHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456677777888899999999999999888776422 11111111 111111111 11111 1111 1233
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 483 SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
| +..|-..=.+|..+|+...+...+...
T Consensus 196 d------~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 196 D------PDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred C------HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3 447888889999999988887655544
No 418
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=26.84 E-value=2.2e+02 Score=23.46 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+...|.-+...|++++|+..|..+++.+...
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4445666667789999999999998886553
No 419
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=26.69 E-value=5.8e+02 Score=25.85 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKES 509 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEA 509 (604)
-..|++.|+.||...|.+.. -.+-..+..+....+|-.-.+..|+.+...||. +|-..+.+++-.|...++.
T Consensus 113 kr~al~~y~~al~~~ppn~~---~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~-----~A~~~k~~vl~hL~~Id~r 184 (193)
T PF12925_consen 113 KRAALENYTAALQADPPNPH---KVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPE-----EAAQIKPQVLTHLRVIDER 184 (193)
T ss_dssp HHHHHHHHHHHHTCSS--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHH-----HHHHhHHHHHHHHHHHHHH
Confidence 44555666666655544110 011111122222233444455555555555555 3444444555444444443
Q ss_pred H
Q 046116 510 L 510 (604)
Q Consensus 510 L 510 (604)
+
T Consensus 185 ~ 185 (193)
T PF12925_consen 185 M 185 (193)
T ss_dssp H
T ss_pred H
Confidence 3
No 420
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.08 E-value=1.6e+02 Score=25.00 Aligned_cols=30 Identities=17% Similarity=-0.025 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+...|.-....|+|++|+..|..+++.+..
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445555566668888888888888887554
No 421
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.65 E-value=2.1e+02 Score=29.82 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=59.0
Q ss_pred ccCCcccchhhhhhhhhhhccchHHHHHHHH-hcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhHHHH
Q 046116 105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAV-KSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEI 183 (604)
Q Consensus 105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av-~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~ 183 (604)
...+..+|...|.+++|--+-. .|+...+ +.|.|+.+..+|.-.-.+|- .-|+-||..++.-......|..|-..|
T Consensus 22 ~~t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr-~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 22 ESTEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPNPSVR-EKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred hcCCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCChHHH-HHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 4467789999999998864332 3555555 67999999999999988886 348999999998877777776655555
Q ss_pred HHH
Q 046116 184 IEL 186 (604)
Q Consensus 184 ~~~ 186 (604)
++.
T Consensus 99 c~~ 101 (254)
T PF04826_consen 99 CEE 101 (254)
T ss_pred HHH
Confidence 443
No 422
>PRK09687 putative lyase; Provisional
Probab=25.55 E-value=55 Score=34.39 Aligned_cols=62 Identities=23% Similarity=0.160 Sum_probs=45.3
Q ss_pred hccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 104 LLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 104 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
|+++.|..+=..|+.++|-..+.... ..-++|.|.+++-.-=.|+=++.|+.||||+.+.+.
T Consensus 62 ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 62 LCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 34677888888888888876553321 224678888886666678888899999999987653
No 423
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.47 E-value=2.1e+02 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.070 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+...|.-....|+|++|+..|..+++.+..
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666667778999999999998888654
No 424
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.76 E-value=30 Score=38.39 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=17.5
Q ss_pred hccCCcccchhhhhhhhh-hhc
Q 046116 104 LLRDQNIYIPYYAAHIIG-SYT 124 (604)
Q Consensus 104 ~~~~~~~~~~yy~ah~~g-sy~ 124 (604)
|-+.-|||||-|++|||- ||.
T Consensus 447 lErnwnIr~pGf~~d~I~~s~r 468 (505)
T COG5624 447 LERNWNIRCPGFVDDIIHMSYR 468 (505)
T ss_pred eccccceecCcchHHHHHHHHH
Confidence 456669999999999998 773
No 425
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.47 E-value=1.2e+03 Score=27.47 Aligned_cols=57 Identities=12% Similarity=-0.134 Sum_probs=42.5
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhchh
Q 046116 462 CYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM--------------------MGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 462 ~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~--------------------LGd~dEAL~d~~kALkl~~ 521 (604)
-|-...+|++||.-....+++|.. +.+|.-.+-.-+.. -.++.+++.+|.+.+-...
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k---~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEK---DVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcch---hhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 344557899999999999999988 77775554444433 5678899999999887733
No 426
>PF12854 PPR_1: PPR repeat
Probab=24.35 E-value=1.6e+02 Score=20.74 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~k 515 (604)
+.-.|--+-.+|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777777777777777776654
No 427
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.32 E-value=2.6e+02 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+...|.-....|++++|+..|..+++.+...
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4455566666699999999999998886553
No 428
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1.3e+03 Score=27.81 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKA---LDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTR 478 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkA---Lel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r 478 (604)
+....+.......+..++|..|+..+... |+- +.-.....+..+..||=..+..+.+.-.-+.|+..
T Consensus 617 ~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~~~ 688 (691)
T COG0751 617 EALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVADFSL 688 (691)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45566777777888889999998887555 221 10011122567777776666666555555555543
No 429
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=23.57 E-value=69 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=45.5
Q ss_pred CCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHH
Q 046116 107 DQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAV 160 (604)
Q Consensus 107 ~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~ 160 (604)
|...| |+|-.++..+..--...|-+..++.+ .|+.+||...-|+|-++.|-
T Consensus 74 d~~~~-p~~~~~l~~~m~~E~~~f~~~vl~~n--~~~~~ll~sd~tfvn~~LA~ 124 (128)
T PF07631_consen 74 DPEKF-PEFSPDLREAMREETDEFFEHVLEEN--GSVSELLTSDYTFVNQRLAK 124 (128)
T ss_pred Chhhc-cccCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHhcCCceeECHHHHH
Confidence 34556 99999999999999999999999999 78999999999999999873
No 430
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.50 E-value=3e+02 Score=33.52 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC----------CcccchHHHHHHHHHHHHHcCCcHHHHHHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDL----------CPL----------KMRKERIVLYSNRAQCYLMLKKPEAAISDTT 477 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel----------~P~----------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~ 477 (604)
..-|..+-+.|+|+.||..|-+|-.+ ..| +..+.....|-..|.-|...|+|+-|...+.
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence 34577777888888888877554221 000 1122234455566777777777777777766
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
++=..+ .| -..|-+.|++++|.+.-.++
T Consensus 790 e~~~~~-------da----i~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 790 EADLFK-------DA----IDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hcchhH-------HH----HHHHhccccHHHHHHHHHHh
Confidence 652211 11 23455567777766554444
No 431
>PF12854 PPR_1: PPR repeat
Probab=22.99 E-value=1.6e+02 Score=20.82 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTR 478 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~r 478 (604)
+...|+-+-.+|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 478888888899999999999887764
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.88 E-value=2.3e+02 Score=29.09 Aligned_cols=51 Identities=31% Similarity=0.463 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHH-HHcCCcHHHHHHHHHHHh
Q 046116 430 IEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCY-LMLKKPEAAISDTTRALS 481 (604)
Q Consensus 430 yeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~y-lkLgdy~eAI~D~~rALe 481 (604)
-+.|.+.|.+|+++. |. .++..-.+..|.+..| -.+|+.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~-~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPP-THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCC-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 367888888888762 22 3455667777777655 458999999998888874
No 433
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.31 E-value=1.9e+02 Score=30.53 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=44.3
Q ss_pred hccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhh---HHHHHHHHhhhhhhcc
Q 046116 104 LLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWV---EERVAVRALGHLASHD 170 (604)
Q Consensus 104 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wv---e~r~~~r~l~h~a~~~ 170 (604)
++..++.||++-|++|+..---.........+ .+++++++..|+..++== -|.+|+++|++|...+
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 35566899999999999876555555555544 677899999888755431 1389999999998544
No 434
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=5.1e+02 Score=29.28 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-
Q 046116 429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGL- 505 (604)
Q Consensus 429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd- 505 (604)
-.++-+..-..+|..+|+ ...+|+.|..+..+.+. |..=+..|.++++.||. |..+|..|=.+......
T Consensus 90 ~ld~eL~~~~~~L~~npk-----sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R---Nfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPK-----SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR---NFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc---cccchHHHHHHHHHHhcc
Confidence 566778888899999999 89999999999998774 68889999999999999 77776555444433322
Q ss_pred ---HHHHHHHHHHHHhc
Q 046116 506 ---AKESLMDALTFIGS 519 (604)
Q Consensus 506 ---~dEAL~d~~kALkl 519 (604)
..+=+....++|.-
T Consensus 162 ~~~~~~El~ftt~~I~~ 178 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLIND 178 (421)
T ss_pred cccchhHHHHHHHHHhc
Confidence 34445555555554
No 435
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=22.21 E-value=2.3e+02 Score=19.38 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116 472 AISDTTRALSLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~ 502 (604)
.+..+..++..+|. |..++..|-.++..
T Consensus 2 El~~~~~~l~~~pk---nys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPK---NYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc---cccHHHHHHHHHHH
Confidence 35566677777777 77777666555544
No 436
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.54 E-value=1.1e+02 Score=36.83 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
.--+.+...|+|..++.--+-|+...|+ ...++..||.||..+++++-|+.|..-....+|. +..+-....+
T Consensus 98 ~s~~m~~~l~~~~~~~~E~~la~~~~p~-----i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~---~~~~~eif~e 169 (748)
T KOG4151|consen 98 ASCYMQLGLGEYPKAIPECELALESQPR-----ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPS---NVSASEIFEE 169 (748)
T ss_pred HHHHhhcCccchhhhcCchhhhhhccch-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCC---cchHHHHHHH
Confidence 3345556778999999999999999999 8888888999999999999999998888999999 7655554444
Q ss_pred HHH
Q 046116 499 AYD 501 (604)
Q Consensus 499 a~~ 501 (604)
.+.
T Consensus 170 lk~ 172 (748)
T KOG4151|consen 170 LKG 172 (748)
T ss_pred HHH
Confidence 333
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.11 E-value=9.4e+02 Score=24.94 Aligned_cols=100 Identities=7% Similarity=-0.141 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH-HHHHHHHHHHhcC-CC--CCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE-AAISDTTRALSLS-KT--MSSH 489 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~-eAI~D~~rALeLd-Pd--~~~n 489 (604)
.+-+..=+..+++.|++..|.+.-.-.|+.......+.+.....++..+......-+ +-.+..++|++.. +. ...+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 344445556677888888776666555554111111124445566777777665433 3555666666655 11 1236
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
++-+...|..+.+-|++.+|...|
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH
Confidence 778888899999999998888776
No 438
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.86 E-value=1.8e+02 Score=31.85 Aligned_cols=78 Identities=8% Similarity=-0.133 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHH
Q 046116 434 VKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWR-RSQAYDMMGLAKESLMD 512 (604)
Q Consensus 434 Ie~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~r-rG~a~~~LGd~dEAL~d 512 (604)
+-.|.++-...|. ++.+|..-+.--.+.|-|.+--.-|.+++..+|. |+..|.- -+.=+...++++.+..-
T Consensus 93 ~f~~~R~tnkff~-----D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~---nvdlWI~~c~~e~~~~ani~s~Ra~ 164 (435)
T COG5191 93 IFELYRSTNKFFN-----DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL---NVDLWIYCCAFELFEIANIESSRAM 164 (435)
T ss_pred eEeeehhhhcCCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CceeeeeeccchhhhhccHHHHHHH
Confidence 3455666666777 8999999888888889999999999999999999 8887765 55667888999999999
Q ss_pred HHHHHhc
Q 046116 513 ALTFIGS 519 (604)
Q Consensus 513 ~~kALkl 519 (604)
|.++|+.
T Consensus 165 f~~glR~ 171 (435)
T COG5191 165 FLKGLRM 171 (435)
T ss_pred HHhhhcc
Confidence 9999999
No 439
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=20.57 E-value=5.4e+02 Score=25.11 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRAL-SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rAL-eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.=|.++|.-++-...-.+.++..-+-+ +-+.. +++.++.+|.+|.++|+..+|-..+++|-+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEI---NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445666665554444445554444433 22233 7889999999999999999998888887665
No 440
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=20.48 E-value=1.7e+02 Score=34.23 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHhhcCcch--HHHHHHHHHhhhcChhHHhhcccccchhHHHHHHHHhhhhccccCccccccHHHHHHHHHHHHHHHHH
Q 046116 318 LLLLLKDPDT--RYEVIDIAALFLVDLVELKSLNGRERVGEAITQTLLQDYHKVKYGNLKLKSKKAGRALDEIWDLKVQK 395 (604)
Q Consensus 318 ll~Ll~dr~T--~y~algka~~aL~DL~eL~eLg~~~~lGd~i~k~L~~dy~~ik~g~L~~~~~~~~~aL~el~~~kvE~ 395 (604)
|||+|.|.+- +|.. |..-|.||.|+....++......+.+.+ ..-.......
T Consensus 263 lLw~lyd~ghl~~YPm---ALg~LadLeEi~pt~~r~~~~~l~~~AI--------------------~sa~~~Y~n~--- 316 (618)
T PF05053_consen 263 LLWLLYDMGHLARYPM---ALGNLADLEEIDPTPGRPTPLELFNEAI--------------------SSARTYYNNH--- 316 (618)
T ss_dssp HHHHHHHTTTTTT-HH---HHHHHHHHHHHS--TTS--HHHHHHHHH--------------------HHHHHHCTT----
T ss_pred HHHHHHhcCchhhCch---hhhhhHhHHhhccCCCCCCHHHHHHHHH--------------------HHHHHHhcCC---
Q ss_pred HHHHhccChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 396 RKKEKLMSDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKA 440 (604)
Q Consensus 396 ~~~E~~ms~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkA 440 (604)
.+--+.-+|..+|+.++|.+|+..+.+|
T Consensus 317 -----------------HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 317 -----------------HVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp ------------------SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------ccccceehhhHHHHHHHHHHHHHHHHHH
No 441
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=20.21 E-value=44 Score=27.88 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=26.6
Q ss_pred HHHHHhhhhhhHHHhhhhhccccccccccccchHHHhHh
Q 046116 232 AEEWASQLQCWSLYLLNCFACRERSSFDLICSQDFLKIV 270 (604)
Q Consensus 232 ae~w~~ql~c~s~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
.+.|-. =.|||-+++||--. .+.-|-+|+|+.+|
T Consensus 38 p~~ll~--~v~Sl~~l~~~p~~---~l~~vf~~~Fl~~L 71 (71)
T PF06743_consen 38 PEDLLD--LVWSLCLLQRFPED---LLNKVFSPDFLQKL 71 (71)
T ss_pred HHHHHH--HHHHHHHHhhCCHH---HHHHHcCHHHHhhC
Confidence 445543 25999999999653 79999999999876
No 442
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=20.12 E-value=7.3e+02 Score=27.49 Aligned_cols=102 Identities=15% Similarity=-0.006 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCcccchHHHHHHHHHHHHHcCCc--------------HHHHHHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLC-PLKMRKERIVLYSNRAQCYLMLKKP--------------EAAISDTTRA 479 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~-P~~~~~~~a~l~~NRA~~ylkLgdy--------------~eAI~D~~rA 479 (604)
...+..|.-+|-.|||+-|...|.-+..-. .++.-...+.++...|.|.+..+.. +.|+..|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 467788999999999999999999988743 2222223455666677788877743 2333334442
Q ss_pred H----hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 480 L----SLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 480 L----eLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
- ..... ...+.+-.+.++...|.+.+|...+.+....
T Consensus 289 ~~~~~~~~~~---a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYY---ALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccc---hHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 11112 4567777788899999999988887777765
No 443
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=20.10 E-value=9.1e+02 Score=28.08 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC--------------cccchHHHHHHHHHHHHHcCCcHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLC-------PLK--------------MRKERIVLYSNRAQCYLMLKKPEAA 472 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~-------P~~--------------~~~~~a~l~~NRA~~ylkLgdy~eA 472 (604)
+..+.--|-.....+..+.|.+.+.+++..- |.. .+.....++...+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 4455555777777777778888888877642 110 0112345667778899999999999
Q ss_pred HHHHHHHHhcCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046116 473 ISDTTRALSLSKT------MSSHSKSLWRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 473 I~D~~rALeLdPd------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~k 515 (604)
....+.+...... ....+..+|-.|..+...|+.+.|+..|.+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 9988887765432 011467899999999999999999999983
Done!