Query 046116
Match_columns 604
No_of_seqs 435 out of 2352
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1.6E-18 5.4E-23 154.4 14.8 115 410-537 9-123 (126)
2 3rkv_A Putative peptidylprolyl 99.8 2.2E-18 7.6E-23 156.6 13.6 141 409-557 6-160 (162)
3 2hr2_A Hypothetical protein; a 99.7 1.9E-17 6.4E-22 157.2 12.3 111 411-524 8-136 (159)
4 4gcn_A Protein STI-1; structur 99.7 3.1E-16 1.1E-20 139.2 14.3 105 411-520 5-113 (127)
5 3upv_A Heat shock protein STI1 99.7 9.5E-16 3.2E-20 132.9 14.3 117 413-537 3-120 (126)
6 3gyz_A Chaperone protein IPGC; 99.6 7.1E-15 2.4E-19 136.4 15.5 108 406-521 28-135 (151)
7 3sz7_A HSC70 cochaperone (SGT) 99.6 1.9E-14 6.4E-19 130.9 16.4 105 410-522 7-111 (164)
8 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.6E-14 8.9E-19 153.7 17.3 143 408-558 262-414 (457)
9 3q49_B STIP1 homology and U bo 99.6 9.7E-14 3.3E-18 120.5 17.3 117 413-537 8-124 (137)
10 2vgx_A Chaperone SYCD; alterna 99.6 3.9E-14 1.3E-18 129.1 14.8 105 410-522 17-121 (148)
11 4ga2_A E3 SUMO-protein ligase 99.6 3.3E-14 1.1E-18 129.4 13.7 103 411-521 28-131 (150)
12 2fbn_A 70 kDa peptidylprolyl i 99.6 8.2E-14 2.8E-18 130.5 16.4 131 407-545 31-172 (198)
13 2xcb_A PCRH, regulatory protei 99.6 6.6E-14 2.3E-18 125.0 15.1 105 410-522 14-118 (142)
14 1p5q_A FKBP52, FK506-binding p 99.5 3.6E-14 1.2E-18 146.3 15.0 129 409-545 142-280 (336)
15 1ihg_A Cyclophilin 40; ppiase 99.5 5.5E-14 1.9E-18 147.9 13.3 130 407-544 216-356 (370)
16 3vtx_A MAMA; tetratricopeptide 99.5 4.9E-13 1.7E-17 122.4 17.0 102 413-522 72-173 (184)
17 2if4_A ATFKBP42; FKBP-like, al 99.5 5.1E-14 1.8E-18 145.4 11.0 124 408-544 173-313 (338)
18 1elw_A TPR1-domain of HOP; HOP 99.5 1E-12 3.4E-17 109.0 14.7 101 413-521 3-103 (118)
19 2vyi_A SGTA protein; chaperone 99.4 3.1E-12 1.1E-16 107.7 16.3 105 409-521 7-111 (131)
20 2lni_A Stress-induced-phosphop 99.4 1.8E-12 6E-17 110.4 14.5 102 412-521 14-115 (133)
21 2c2l_A CHIP, carboxy terminus 99.4 1.8E-12 6.2E-17 129.9 16.6 103 414-524 4-106 (281)
22 1hxi_A PEX5, peroxisome target 99.4 8.6E-13 2.9E-17 116.2 12.5 100 415-522 18-117 (121)
23 2dba_A Smooth muscle cell asso 99.4 2.6E-12 8.8E-17 111.7 15.0 104 413-521 27-130 (148)
24 1elr_A TPR2A-domain of HOP; HO 99.4 3.8E-12 1.3E-16 107.5 14.4 115 413-541 3-124 (131)
25 1a17_A Serine/threonine protei 99.4 8.2E-12 2.8E-16 110.6 17.1 105 409-521 8-112 (166)
26 3urz_A Uncharacterized protein 99.4 3.5E-12 1.2E-16 121.4 14.8 101 413-521 3-119 (208)
27 4gyw_A UDP-N-acetylglucosamine 99.4 3.1E-12 1.1E-16 146.5 16.3 106 408-521 37-142 (723)
28 2pl2_A Hypothetical conserved 99.4 6.2E-12 2.1E-16 120.5 14.9 102 411-521 70-182 (217)
29 3uq3_A Heat shock protein STI1 99.4 2.1E-11 7E-16 114.9 18.3 106 409-522 134-239 (258)
30 2xev_A YBGF; tetratricopeptide 99.4 6.6E-12 2.2E-16 107.7 13.5 102 415-521 3-107 (129)
31 3urz_A Uncharacterized protein 99.4 1.6E-11 5.5E-16 116.8 17.2 80 417-504 57-136 (208)
32 4gyw_A UDP-N-acetylglucosamine 99.4 4.8E-12 1.6E-16 144.9 15.6 105 410-522 5-109 (723)
33 2pl2_A Hypothetical conserved 99.4 5.7E-12 1.9E-16 120.8 13.6 102 411-520 36-148 (217)
34 2l6j_A TPR repeat-containing p 99.4 6.9E-13 2.4E-17 110.6 6.1 95 413-515 3-103 (111)
35 2h6f_A Protein farnesyltransfe 99.3 3.1E-12 1.1E-16 135.6 12.5 109 406-522 123-232 (382)
36 4i17_A Hypothetical protein; T 99.3 1E-11 3.4E-16 117.7 14.3 100 414-521 7-107 (228)
37 1na0_A Designed protein CTPR3; 99.3 8.2E-11 2.8E-15 98.1 16.4 100 414-521 9-108 (125)
38 4ga2_A E3 SUMO-protein ligase 99.3 1.6E-12 5.3E-17 118.3 6.1 112 420-544 3-114 (150)
39 2e2e_A Formate-dependent nitri 99.3 7.3E-11 2.5E-15 107.6 16.1 101 413-521 43-146 (177)
40 2h6f_A Protein farnesyltransfe 99.3 2.4E-11 8.1E-16 128.8 13.8 106 409-522 92-198 (382)
41 4i17_A Hypothetical protein; T 99.3 6.7E-11 2.3E-15 112.0 14.9 100 414-521 42-148 (228)
42 3vtx_A MAMA; tetratricopeptide 99.3 1.5E-10 5.3E-15 105.6 16.8 103 411-521 36-138 (184)
43 1hh8_A P67PHOX, NCF-2, neutrop 99.3 6E-11 2E-15 110.4 14.2 101 414-522 37-153 (213)
44 3k9i_A BH0479 protein; putativ 99.3 6.1E-12 2.1E-16 108.6 6.6 88 426-521 2-92 (117)
45 2kck_A TPR repeat; tetratricop 99.2 5.5E-11 1.9E-15 97.8 11.4 102 414-521 6-108 (112)
46 1wao_1 Serine/threonine protei 99.2 1.4E-11 4.9E-16 133.5 10.1 114 412-538 4-117 (477)
47 2gw1_A Mitochondrial precursor 99.2 1.8E-10 6.1E-15 119.9 17.1 102 411-521 3-104 (514)
48 4eqf_A PEX5-related protein; a 99.2 1.4E-10 4.6E-15 116.9 15.2 104 413-524 212-315 (365)
49 3ieg_A DNAJ homolog subfamily 99.2 2.7E-10 9.3E-15 111.9 16.9 121 413-542 233-353 (359)
50 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.7E-10 6E-15 110.1 14.9 103 411-521 40-142 (275)
51 3qky_A Outer membrane assembly 99.2 1.5E-10 5E-15 112.4 13.9 108 413-522 14-129 (261)
52 4gco_A Protein STI-1; structur 99.2 1.1E-10 3.7E-15 103.6 11.5 83 410-500 43-125 (126)
53 1fch_A Peroxisomal targeting s 99.2 4E-10 1.4E-14 112.5 16.8 103 413-523 216-318 (368)
54 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.1E-10 7.2E-15 106.7 13.4 99 413-522 5-103 (213)
55 2ho1_A Type 4 fimbrial biogene 99.2 1.4E-09 4.7E-14 103.2 19.1 99 413-519 140-238 (252)
56 3as5_A MAMA; tetratricopeptide 99.2 5.8E-10 2E-14 99.0 15.4 103 413-523 75-177 (186)
57 1qqe_A Vesicular transport pro 99.2 1.1E-09 3.7E-14 109.5 18.6 111 413-523 116-232 (292)
58 2pzi_A Probable serine/threoni 99.2 7.8E-11 2.7E-15 132.9 11.2 107 407-522 460-566 (681)
59 1w3b_A UDP-N-acetylglucosamine 99.2 3.9E-09 1.3E-13 107.4 22.7 97 415-519 204-300 (388)
60 1zu2_A Mitochondrial import re 99.1 5.5E-11 1.9E-15 112.7 8.1 88 426-521 14-122 (158)
61 3ieg_A DNAJ homolog subfamily 99.1 4E-10 1.4E-14 110.7 14.3 101 413-521 2-102 (359)
62 2fo7_A Synthetic consensus TPR 99.1 9.2E-10 3.1E-14 92.2 14.5 100 414-521 35-134 (136)
63 4abn_A Tetratricopeptide repea 99.1 2.6E-10 9E-15 122.7 14.0 117 414-543 170-306 (474)
64 3fp2_A TPR repeat-containing p 99.1 2.6E-10 9E-15 119.9 13.4 106 408-522 19-124 (537)
65 3uq3_A Heat shock protein STI1 99.1 1.1E-09 3.8E-14 102.9 16.3 106 413-521 78-204 (258)
66 2q7f_A YRRB protein; TPR, prot 99.1 1.1E-09 3.6E-14 102.7 15.1 100 414-521 125-224 (243)
67 2kat_A Uncharacterized protein 99.1 7.3E-10 2.5E-14 94.5 12.6 85 431-523 2-86 (115)
68 2vsy_A XCC0866; transferase, g 99.1 4.6E-10 1.6E-14 122.2 14.1 101 413-521 22-122 (568)
69 2fo7_A Synthetic consensus TPR 99.1 1.1E-09 3.8E-14 91.6 13.4 98 415-520 2-99 (136)
70 3hym_B Cell division cycle pro 99.1 2.3E-09 7.7E-14 104.6 17.5 119 413-539 192-314 (330)
71 1w3b_A UDP-N-acetylglucosamine 99.1 5.2E-09 1.8E-13 106.4 20.9 104 409-520 232-335 (388)
72 2q7f_A YRRB protein; TPR, prot 99.1 1.5E-09 5.2E-14 101.6 15.6 101 413-521 90-190 (243)
73 1na3_A Designed protein CTPR2; 99.1 1.1E-09 3.8E-14 88.0 12.7 84 413-504 8-91 (91)
74 3as5_A MAMA; tetratricopeptide 99.1 2E-09 6.7E-14 95.6 15.5 100 413-520 41-140 (186)
75 3mkr_A Coatomer subunit epsilo 99.1 3.3E-09 1.1E-13 106.9 19.0 92 422-521 174-266 (291)
76 2y4t_A DNAJ homolog subfamily 99.1 8.7E-09 3E-13 106.0 22.5 116 415-539 258-373 (450)
77 2y4t_A DNAJ homolog subfamily 99.1 7.4E-10 2.5E-14 114.0 14.3 105 409-521 21-125 (450)
78 3cv0_A Peroxisome targeting si 99.1 1.5E-09 5E-14 105.8 15.4 103 413-523 171-273 (327)
79 4eqf_A PEX5-related protein; a 99.1 7.8E-10 2.7E-14 111.3 13.9 104 413-524 64-167 (365)
80 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.6E-09 5.5E-14 103.8 15.2 107 414-522 4-128 (225)
81 2vq2_A PILW, putative fimbrial 99.1 1.7E-09 5.7E-14 99.6 14.6 105 407-519 35-142 (225)
82 3qky_A Outer membrane assembly 99.1 5.5E-09 1.9E-13 101.3 18.9 107 414-522 52-180 (261)
83 2vq2_A PILW, putative fimbrial 99.1 3.4E-09 1.2E-13 97.5 15.7 107 407-521 69-178 (225)
84 2ho1_A Type 4 fimbrial biogene 99.1 5.8E-09 2E-13 98.9 17.5 100 413-520 104-205 (252)
85 3hym_B Cell division cycle pro 99.0 2E-08 6.9E-13 97.8 21.7 115 414-541 159-282 (330)
86 1p5q_A FKBP52, FK506-binding p 99.0 2E-09 6.9E-14 110.7 14.8 101 411-519 193-294 (336)
87 3u4t_A TPR repeat-containing p 99.0 1.9E-09 6.6E-14 103.2 13.6 109 406-519 29-137 (272)
88 1fch_A Peroxisomal targeting s 99.0 2.1E-09 7.1E-14 107.3 14.3 103 414-524 64-166 (368)
89 1a17_A Serine/threonine protei 99.0 3E-09 1E-13 93.9 13.7 102 413-522 46-149 (166)
90 2kc7_A BFR218_protein; tetratr 99.0 6.8E-10 2.3E-14 91.8 8.8 90 418-523 4-94 (99)
91 2vsy_A XCC0866; transferase, g 99.0 2.2E-09 7.4E-14 116.9 15.1 103 412-522 55-160 (568)
92 2pzi_A Probable serine/threoni 99.0 3.7E-10 1.3E-14 127.3 7.8 102 411-521 430-531 (681)
93 1xnf_A Lipoprotein NLPI; TPR, 99.0 9.2E-09 3.1E-13 98.1 16.2 68 413-485 76-143 (275)
94 2r5s_A Uncharacterized protein 99.0 2.9E-09 9.9E-14 97.9 12.2 107 406-521 32-139 (176)
95 3qou_A Protein YBBN; thioredox 99.0 5.7E-09 1.9E-13 104.6 15.0 117 414-541 117-267 (287)
96 3u4t_A TPR repeat-containing p 99.0 4.1E-09 1.4E-13 100.9 13.3 100 414-521 74-173 (272)
97 4abn_A Tetratricopeptide repea 99.0 3E-09 1E-13 114.5 13.6 101 412-521 135-252 (474)
98 3rkv_A Putative peptidylprolyl 99.0 6E-09 2E-13 94.1 13.3 87 410-504 59-146 (162)
99 3cv0_A Peroxisome targeting si 99.0 7.8E-09 2.7E-13 100.6 14.7 103 413-523 20-122 (327)
100 3gyz_A Chaperone protein IPGC; 99.0 6.4E-09 2.2E-13 96.2 13.3 72 409-485 65-136 (151)
101 3nf1_A KLC 1, kinesin light ch 99.0 2.7E-08 9.3E-13 96.1 18.1 103 411-521 150-309 (311)
102 1qqe_A Vesicular transport pro 98.9 4.7E-09 1.6E-13 104.9 12.9 111 412-522 75-190 (292)
103 3fp2_A TPR repeat-containing p 98.9 1.7E-08 5.7E-13 106.1 17.6 104 413-524 309-412 (537)
104 2vyi_A SGTA protein; chaperone 98.9 7.2E-09 2.5E-13 86.9 11.4 86 413-506 45-130 (131)
105 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.7E-13 96.9 13.6 107 411-522 40-159 (283)
106 3ulq_A Response regulator aspa 98.9 1.2E-08 4.2E-13 104.4 14.0 110 411-523 181-297 (383)
107 3ma5_A Tetratricopeptide repea 98.9 8.4E-09 2.9E-13 87.2 10.6 83 452-540 6-88 (100)
108 3edt_B KLC 2, kinesin light ch 98.9 6.8E-09 2.3E-13 98.4 11.0 104 411-522 82-201 (283)
109 3ro3_A PINS homolog, G-protein 98.9 1E-08 3.6E-13 88.4 11.2 111 412-522 7-121 (164)
110 2e2e_A Formate-dependent nitri 98.9 1.4E-09 4.8E-14 99.1 5.9 94 420-521 16-112 (177)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 1.3E-08 4.4E-13 102.4 13.4 108 413-522 115-226 (307)
112 3ro3_A PINS homolog, G-protein 98.9 3.1E-08 1.1E-12 85.4 14.0 109 413-521 48-160 (164)
113 3upv_A Heat shock protein STI1 98.9 1.3E-08 4.5E-13 87.7 11.5 83 413-503 37-125 (126)
114 1wao_1 Serine/threonine protei 98.9 3E-09 1E-13 115.3 8.9 104 413-524 39-155 (477)
115 2vgx_A Chaperone SYCD; alterna 98.9 3.8E-09 1.3E-13 95.9 8.0 93 435-540 8-100 (148)
116 2xpi_A Anaphase-promoting comp 98.9 7E-08 2.4E-12 103.2 19.1 106 413-521 474-581 (597)
117 3sz7_A HSC70 cochaperone (SGT) 98.9 9.5E-09 3.2E-13 93.0 10.5 82 412-501 43-124 (164)
118 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.2E-08 4.1E-13 109.6 13.0 100 412-519 315-415 (457)
119 2yhc_A BAMD, UPF0169 lipoprote 98.8 6.8E-08 2.3E-12 92.4 16.6 104 421-524 103-218 (225)
120 2lni_A Stress-induced-phosphop 98.8 9.8E-09 3.4E-13 87.0 9.6 85 413-505 49-133 (133)
121 3u3w_A Transcriptional activat 98.8 2E-08 6.8E-13 99.8 13.2 110 413-522 154-269 (293)
122 1ihg_A Cyclophilin 40; ppiase 98.8 4.8E-08 1.6E-12 102.5 16.1 96 409-512 268-363 (370)
123 3nf1_A KLC 1, kinesin light ch 98.8 2.3E-08 8E-13 96.5 12.6 107 411-522 108-227 (311)
124 3sf4_A G-protein-signaling mod 98.8 4.8E-08 1.6E-12 98.1 15.2 112 412-523 225-340 (406)
125 1na0_A Designed protein CTPR3; 98.8 5.3E-08 1.8E-12 80.8 12.9 84 413-504 42-125 (125)
126 2gw1_A Mitochondrial precursor 98.8 3E-08 1E-12 103.1 13.7 106 413-521 371-480 (514)
127 3q15_A PSP28, response regulat 98.8 3.7E-08 1.3E-12 101.0 14.2 108 412-522 180-293 (378)
128 2qfc_A PLCR protein; TPR, HTH, 98.8 3.1E-08 1.1E-12 98.4 13.2 108 413-521 154-268 (293)
129 2fbn_A 70 kDa peptidylprolyl i 98.8 2E-08 6.7E-13 93.7 10.8 98 414-519 88-186 (198)
130 3ro2_A PINS homolog, G-protein 98.8 3.8E-08 1.3E-12 94.9 13.0 107 413-523 4-116 (338)
131 2xcb_A PCRH, regulatory protei 98.8 1.3E-08 4.5E-13 90.4 9.0 84 410-501 48-131 (142)
132 2r5s_A Uncharacterized protein 98.8 3.3E-08 1.1E-12 90.8 11.8 84 428-519 88-173 (176)
133 4g1t_A Interferon-induced prot 98.8 5.5E-08 1.9E-12 101.1 14.9 108 414-521 51-169 (472)
134 3k9i_A BH0479 protein; putativ 98.8 2.9E-08 1E-12 85.3 10.6 75 411-493 24-98 (117)
135 2xpi_A Anaphase-promoting comp 98.8 9.3E-08 3.2E-12 102.3 16.8 102 413-522 406-507 (597)
136 3mkr_A Coatomer subunit epsilo 98.8 8.9E-08 3E-12 96.5 15.6 99 413-521 129-231 (291)
137 4gcn_A Protein STI-1; structur 98.8 1.9E-08 6.6E-13 88.7 9.4 70 451-523 6-75 (127)
138 3qou_A Protein YBBN; thioredox 98.8 2.4E-08 8.2E-13 100.0 11.0 99 413-519 184-284 (287)
139 4a1s_A PINS, partner of inscut 98.8 3.8E-08 1.3E-12 100.2 12.2 109 411-523 45-159 (411)
140 3ro2_A PINS homolog, G-protein 98.8 9.5E-08 3.2E-12 92.1 14.1 110 412-521 221-334 (338)
141 3ulq_A Response regulator aspa 98.7 3.9E-08 1.3E-12 100.6 11.6 113 411-523 140-257 (383)
142 3ma5_A Tetratricopeptide repea 98.7 1.8E-08 6E-13 85.2 7.5 86 411-502 4-89 (100)
143 3sf4_A G-protein-signaling mod 98.7 5.1E-08 1.7E-12 97.8 12.1 108 413-524 8-121 (406)
144 3gw4_A Uncharacterized protein 98.7 5E-08 1.7E-12 89.1 10.8 109 413-521 25-138 (203)
145 2ifu_A Gamma-SNAP; membrane fu 98.7 3.8E-08 1.3E-12 98.9 10.7 111 412-523 74-188 (307)
146 4a1s_A PINS, partner of inscut 98.7 1.2E-07 3.9E-12 96.6 13.2 111 412-522 164-295 (411)
147 3n71_A Histone lysine methyltr 98.7 1.2E-07 4E-12 104.1 14.2 131 403-533 298-436 (490)
148 1elw_A TPR1-domain of HOP; HOP 98.7 1.9E-07 6.4E-12 76.9 12.1 80 413-500 37-116 (118)
149 2c2l_A CHIP, carboxy terminus 98.7 2.3E-08 7.8E-13 100.0 7.4 68 413-485 37-104 (281)
150 2ond_A Cleavage stimulation fa 98.7 9E-08 3.1E-12 95.9 11.7 104 410-521 95-200 (308)
151 2l6j_A TPR repeat-containing p 98.7 1.6E-07 5.5E-12 77.7 11.2 68 452-522 3-70 (111)
152 2if4_A ATFKBP42; FKBP-like, al 98.7 2.2E-08 7.4E-13 103.3 6.8 100 415-522 231-331 (338)
153 2qfc_A PLCR protein; TPR, HTH, 98.7 4E-07 1.4E-11 90.4 15.5 110 413-522 114-228 (293)
154 1na3_A Designed protein CTPR2; 98.6 2.7E-07 9.1E-12 73.8 11.0 67 452-521 8-74 (91)
155 4g1t_A Interferon-induced prot 98.6 1.1E-07 3.9E-12 98.7 10.9 101 412-520 245-364 (472)
156 2hr2_A Hypothetical protein; a 98.6 7.6E-08 2.6E-12 91.2 8.5 69 412-485 55-134 (159)
157 1ouv_A Conserved hypothetical 98.6 4.4E-07 1.5E-11 88.0 13.9 97 411-519 35-143 (273)
158 3u3w_A Transcriptional activat 98.6 2.8E-07 9.6E-12 91.5 12.4 111 414-524 115-230 (293)
159 1dce_A Protein (RAB geranylger 98.6 2.3E-07 8E-12 103.2 13.0 123 406-541 55-190 (567)
160 3gw4_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 83.2 12.2 111 411-522 63-179 (203)
161 2dba_A Smooth muscle cell asso 98.6 2.9E-07 1E-11 79.5 10.8 81 413-501 64-144 (148)
162 3qww_A SET and MYND domain-con 98.6 2.8E-07 9.4E-12 99.7 13.0 111 414-524 298-416 (433)
163 2ond_A Cleavage stimulation fa 98.6 2.3E-07 7.9E-12 92.9 11.5 101 411-519 130-232 (308)
164 1zu2_A Mitochondrial import re 98.6 7.2E-08 2.5E-12 91.3 7.3 73 408-485 30-123 (158)
165 2kat_A Uncharacterized protein 98.6 1.7E-07 5.7E-12 79.7 8.5 85 413-503 18-102 (115)
166 3q15_A PSP28, response regulat 98.6 2.2E-07 7.4E-12 95.3 11.0 112 411-522 138-254 (378)
167 3dra_A Protein farnesyltransfe 98.6 3.4E-07 1.2E-11 94.7 12.2 112 403-522 56-178 (306)
168 2xev_A YBGF; tetratricopeptide 98.5 8.5E-07 2.9E-11 75.5 12.6 86 414-504 39-124 (129)
169 1dce_A Protein (RAB geranylger 98.5 3.8E-07 1.3E-11 101.4 12.7 127 402-541 95-238 (567)
170 1hxi_A PEX5, peroxisome target 98.5 1.3E-07 4.5E-12 82.8 7.1 72 409-485 46-117 (121)
171 3q49_B STIP1 homology and U bo 98.5 6.7E-07 2.3E-11 77.0 10.9 67 452-521 8-74 (137)
172 3dra_A Protein farnesyltransfe 98.5 9.2E-07 3.2E-11 91.4 13.2 124 408-544 97-235 (306)
173 2kc7_A BFR218_protein; tetratr 98.5 7.8E-07 2.7E-11 73.1 10.1 63 456-521 3-66 (99)
174 1ouv_A Conserved hypothetical 98.5 2.7E-06 9.3E-11 82.4 15.1 95 413-519 73-179 (273)
175 2kck_A TPR repeat; tetratricop 98.5 4.3E-07 1.5E-11 74.2 8.0 67 452-521 5-71 (112)
176 1hz4_A MALT regulatory protein 98.4 3.8E-06 1.3E-10 85.0 16.6 109 413-521 92-205 (373)
177 3qwp_A SET and MYND domain-con 98.4 2.3E-06 7.7E-11 92.2 14.6 116 413-528 286-409 (429)
178 3dss_A Geranylgeranyl transfer 98.4 1.5E-06 5.1E-11 91.1 12.6 115 401-523 95-226 (331)
179 1elr_A TPR2A-domain of HOP; HO 98.4 7.6E-07 2.6E-11 74.5 8.4 88 413-504 37-126 (131)
180 2v5f_A Prolyl 4-hydroxylase su 98.4 2.9E-06 1E-10 72.8 12.2 81 414-497 5-87 (104)
181 3q7a_A Farnesyltransferase alp 98.3 1.5E-06 5.2E-11 91.7 10.8 114 401-522 75-199 (349)
182 3bee_A Putative YFRE protein; 98.3 8E-06 2.7E-10 69.7 12.3 67 452-521 5-74 (93)
183 3dss_A Geranylgeranyl transfer 98.3 6.1E-06 2.1E-10 86.5 13.0 107 407-521 57-176 (331)
184 1hz4_A MALT regulatory protein 98.2 9.1E-06 3.1E-10 82.1 13.4 110 413-522 13-125 (373)
185 3rjv_A Putative SEL1 repeat pr 98.2 8.3E-06 2.8E-10 77.7 12.0 100 413-519 84-197 (212)
186 3q7a_A Farnesyltransferase alp 98.2 2.9E-06 1E-10 89.6 9.6 125 407-544 116-257 (349)
187 3n71_A Histone lysine methyltr 98.2 6E-06 2E-10 90.6 11.8 110 409-519 346-464 (490)
188 2ooe_A Cleavage stimulation fa 98.2 6.4E-06 2.2E-10 88.5 11.3 101 413-521 320-422 (530)
189 3rjv_A Putative SEL1 repeat pr 98.1 1.3E-05 4.4E-10 76.3 11.2 96 413-519 49-158 (212)
190 4f3v_A ESX-1 secretion system 98.1 1.5E-05 5.1E-10 81.9 11.7 105 411-521 133-239 (282)
191 1pc2_A Mitochondria fission pr 98.1 1.9E-05 6.6E-10 74.2 11.2 85 429-521 13-102 (152)
192 2ooe_A Cleavage stimulation fa 98.0 3.1E-05 1.1E-09 83.2 12.3 108 406-521 347-456 (530)
193 1klx_A Cysteine rich protein B 97.9 7.1E-05 2.4E-09 67.1 11.7 88 420-519 31-126 (138)
194 4f3v_A ESX-1 secretion system 97.9 1.2E-05 4.2E-10 82.5 7.3 96 415-519 103-200 (282)
195 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.8E-09 75.2 14.5 106 417-522 98-207 (434)
196 3ly7_A Transcriptional activat 97.8 0.00013 4.3E-09 77.8 13.3 99 414-521 196-341 (372)
197 4b4t_Q 26S proteasome regulato 97.8 0.00017 5.8E-09 73.9 13.5 111 413-523 134-249 (434)
198 3bee_A Putative YFRE protein; 97.8 5.1E-05 1.8E-09 64.7 7.2 73 413-491 5-80 (93)
199 2xm6_A Protein corresponding t 97.7 0.0003 1E-08 74.7 13.5 95 414-520 328-433 (490)
200 2xm6_A Protein corresponding t 97.6 0.00049 1.7E-08 73.1 14.4 96 412-519 73-180 (490)
201 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00035 1.2E-08 59.7 10.8 71 451-521 3-77 (104)
202 3e4b_A ALGK; tetratricopeptide 97.6 0.00017 5.7E-09 77.0 10.3 86 418-517 217-314 (452)
203 1pc2_A Mitochondria fission pr 97.5 0.00026 9E-09 66.5 9.0 79 413-498 31-113 (152)
204 3qww_A SET and MYND domain-con 97.4 0.00039 1.3E-08 75.1 10.1 73 409-482 335-411 (433)
205 3qwp_A SET and MYND domain-con 97.3 0.00041 1.4E-08 74.6 8.5 94 409-503 324-426 (429)
206 3u64_A Protein TP_0956; tetrat 97.3 0.00097 3.3E-08 69.0 10.8 88 430-523 179-273 (301)
207 1xi4_A Clathrin heavy chain; a 97.3 0.0018 6.1E-08 79.0 14.6 96 411-516 1102-1221(1630)
208 1klx_A Cysteine rich protein B 97.3 0.00077 2.6E-08 60.2 8.8 78 428-519 9-90 (138)
209 1xi4_A Clathrin heavy chain; a 97.3 0.0036 1.2E-07 76.4 16.8 112 415-544 1196-1329(1630)
210 3e4b_A ALGK; tetratricopeptide 97.3 0.0039 1.3E-07 66.3 15.5 93 413-519 247-351 (452)
211 3mv2_B Coatomer subunit epsilo 97.3 0.0032 1.1E-07 65.4 14.1 97 414-521 176-284 (310)
212 3ffl_A Anaphase-promoting comp 97.1 0.0016 5.4E-08 62.1 9.1 100 415-514 21-146 (167)
213 1nzn_A CGI-135 protein, fissio 97.1 0.0027 9.3E-08 57.8 10.3 85 429-521 16-105 (126)
214 1b89_A Protein (clathrin heavy 97.0 0.00097 3.3E-08 72.6 7.5 46 493-543 210-255 (449)
215 3mv2_B Coatomer subunit epsilo 97.0 0.0039 1.3E-07 64.8 11.4 102 413-522 135-243 (310)
216 4hxt_A De novo protein OR329; 96.6 0.016 5.6E-07 54.7 12.1 99 60-170 18-117 (252)
217 2ff4_A Probable regulatory pro 96.6 0.017 5.9E-07 61.0 13.5 106 413-521 114-236 (388)
218 3ly7_A Transcriptional activat 96.2 0.016 5.5E-07 61.6 10.2 67 413-485 276-342 (372)
219 3tpo_A Importin subunit alpha- 95.7 0.047 1.6E-06 59.3 11.2 103 60-173 92-196 (529)
220 4db8_A Armadillo-repeat protei 95.6 0.0071 2.4E-07 57.9 4.0 116 43-173 14-130 (252)
221 3ffl_A Anaphase-promoting comp 95.6 0.034 1.2E-06 52.9 8.2 85 412-500 61-165 (167)
222 1nzn_A CGI-135 protein, fissio 95.4 0.066 2.3E-06 48.7 9.1 78 414-498 35-116 (126)
223 1b89_A Protein (clathrin heavy 95.2 0.036 1.2E-06 60.3 8.0 103 414-519 148-272 (449)
224 1y8m_A FIS1; mitochondria, unk 95.2 0.36 1.2E-05 44.8 13.6 76 414-496 39-117 (144)
225 4db6_A Armadillo repeat protei 95.1 0.019 6.7E-07 53.4 5.0 97 63-171 31-128 (210)
226 4db8_A Armadillo-repeat protei 94.9 0.019 6.6E-07 54.8 4.6 96 63-170 115-211 (252)
227 3o48_A Mitochondria fission 1 94.8 0.25 8.4E-06 45.5 11.3 79 414-499 40-121 (134)
228 3u64_A Protein TP_0956; tetrat 94.8 0.13 4.3E-06 53.3 10.4 69 413-485 198-272 (301)
229 4e6h_A MRNA 3'-END-processing 94.8 0.091 3.1E-06 59.8 10.2 103 412-519 341-463 (679)
230 4gns_B Protein CSD3, chitin bi 94.7 0.47 1.6E-05 54.8 16.0 62 413-479 336-397 (754)
231 1xqr_A HSPBP1 protein; armadil 94.6 0.02 6.7E-07 58.7 3.9 94 64-169 145-239 (296)
232 4db6_A Armadillo repeat protei 94.5 0.042 1.4E-06 51.1 5.6 66 105-171 21-86 (210)
233 4b8j_A Importin subunit alpha- 94.4 0.11 3.7E-06 55.7 9.2 97 63-171 222-318 (528)
234 3nmw_A APC variant protein; AR 94.3 0.02 6.8E-07 60.1 3.0 118 50-170 41-202 (354)
235 4hxt_A De novo protein OR329; 94.2 0.037 1.3E-06 52.2 4.6 96 63-170 63-159 (252)
236 3o48_A Mitochondria fission 1 94.0 0.32 1.1E-05 44.7 10.1 69 452-522 39-110 (134)
237 1y8m_A FIS1; mitochondria, unk 93.9 0.5 1.7E-05 43.9 11.4 68 452-521 38-108 (144)
238 4e6h_A MRNA 3'-END-processing 93.9 0.23 7.9E-06 56.5 11.2 83 430-520 325-408 (679)
239 3txn_A 26S proteasome regulato 93.6 0.26 8.7E-06 52.8 10.2 102 418-521 103-212 (394)
240 2z6h_A Catenin beta-1, beta-ca 93.6 0.026 9E-07 62.7 2.5 65 106-170 273-338 (644)
241 1xm9_A Plakophilin 1; armadill 93.4 0.13 4.6E-06 54.9 7.7 112 56-178 14-126 (457)
242 3nmz_A APC variant protein; pr 93.4 0.058 2E-06 58.7 4.8 103 64-177 220-326 (458)
243 2z6g_A B-catenin; FULL-length, 93.0 0.17 5.7E-06 58.1 8.2 94 64-170 380-474 (780)
244 3tt9_A Plakophilin-2; cell adh 93.0 0.13 4.4E-06 51.1 6.3 104 63-177 29-133 (233)
245 4gns_B Protein CSD3, chitin bi 92.6 0.25 8.6E-06 57.0 8.8 60 454-516 338-397 (754)
246 1wa5_B Importin alpha subunit; 92.2 0.26 9E-06 52.9 7.9 97 63-171 234-331 (530)
247 4h7y_A Dual specificity protei 91.8 1.5 5E-05 41.4 11.3 103 416-522 15-126 (161)
248 2jdq_A Importin alpha-1 subuni 91.6 0.52 1.8E-05 48.5 9.1 97 63-171 169-266 (450)
249 4b4t_R RPN7, 26S proteasome re 91.6 0.44 1.5E-05 50.9 8.8 104 414-519 131-237 (429)
250 3l6x_A Catenin delta-1; cateni 91.3 0.15 5.1E-06 57.2 4.9 103 64-177 68-172 (584)
251 4b8j_A Importin subunit alpha- 90.8 0.22 7.6E-06 53.3 5.5 117 41-171 74-192 (528)
252 3ul1_B Importin subunit alpha- 90.5 0.34 1.1E-05 52.4 6.5 103 60-173 73-177 (510)
253 1wa5_B Importin alpha subunit; 88.5 0.36 1.2E-05 51.8 5.0 115 41-171 87-205 (530)
254 4g26_A Pentatricopeptide repea 88.5 6.3 0.00022 42.7 14.8 98 414-519 105-204 (501)
255 1jdh_A Beta-catenin; beta-cate 88.1 1.2 4E-05 47.0 8.5 106 63-177 285-394 (529)
256 1zbp_A Hypothetical protein VP 87.7 3.4 0.00011 42.2 11.0 60 421-485 4-63 (273)
257 3nmw_A APC variant protein; AR 87.7 0.15 5.1E-06 53.4 1.2 97 64-172 238-338 (354)
258 1xqr_A HSPBP1 protein; armadil 87.4 0.45 1.5E-05 48.6 4.5 127 31-169 20-155 (296)
259 1ya0_A SMG-7 transcript varian 87.1 2.7 9.2E-05 46.1 10.8 81 415-503 153-233 (497)
260 2jdq_A Importin alpha-1 subuni 86.5 0.67 2.3E-05 47.6 5.3 68 103-170 114-181 (450)
261 3tpo_A Importin subunit alpha- 86.2 1.5 5E-05 47.4 8.1 66 105-171 260-325 (529)
262 3kae_A CDC27, possible protein 85.0 19 0.00065 34.9 14.0 94 416-519 35-143 (242)
263 2uy1_A Cleavage stimulation fa 84.5 4.5 0.00015 43.7 10.9 103 414-521 213-351 (493)
264 3now_A UNC-45 protein, SD10334 84.4 4.7 0.00016 46.9 11.6 132 56-190 342-544 (810)
265 3ul1_B Importin subunit alpha- 84.0 1.3 4.5E-05 47.7 6.4 103 63-176 120-227 (510)
266 1jdh_A Beta-catenin; beta-cate 83.4 0.88 3E-05 47.9 4.6 103 63-176 120-223 (529)
267 3ax2_A Mitochondrial import re 82.5 4.4 0.00015 33.4 7.4 41 406-446 9-49 (73)
268 3nmz_A APC variant protein; pr 82.3 0.85 2.9E-05 49.5 4.0 59 112-171 395-453 (458)
269 3tt9_A Plakophilin-2; cell adh 81.7 1.6 5.5E-05 43.2 5.4 73 115-190 29-102 (233)
270 4b4t_P 26S proteasome regulato 80.8 13 0.00043 39.8 12.5 108 413-520 136-248 (445)
271 1zbp_A Hypothetical protein VP 80.6 3.9 0.00013 41.7 7.9 60 461-523 5-64 (273)
272 3now_A UNC-45 protein, SD10334 80.0 0.94 3.2E-05 52.7 3.5 98 63-171 555-655 (810)
273 1ya0_A SMG-7 transcript varian 79.1 6.7 0.00023 43.0 9.8 80 455-542 154-233 (497)
274 1xm9_A Plakophilin 1; armadill 78.8 1.5 5.3E-05 46.6 4.5 63 106-169 12-74 (457)
275 3l6x_A Catenin delta-1; cateni 78.3 3.2 0.00011 46.5 7.0 73 106-179 58-132 (584)
276 2ff4_A Probable regulatory pro 77.3 9.4 0.00032 39.9 10.0 62 414-480 171-232 (388)
277 2uy1_A Cleavage stimulation fa 76.9 16 0.00055 39.3 11.9 93 415-516 287-380 (493)
278 4g26_A Pentatricopeptide repea 76.7 11 0.00039 40.7 10.7 82 428-519 84-169 (501)
279 2z6g_A B-catenin; FULL-length, 76.7 2.2 7.4E-05 48.9 5.2 106 63-179 253-359 (780)
280 2w2u_A Hypothetical P60 katani 76.2 12 0.00041 31.2 8.4 34 410-443 15-48 (83)
281 2z6h_A Catenin beta-1, beta-ca 76.2 2.4 8.1E-05 46.9 5.2 105 63-178 117-222 (644)
282 4fhn_B Nucleoporin NUP120; pro 73.9 30 0.001 41.4 14.2 97 418-514 846-962 (1139)
283 2v6y_A AAA family ATPase, P60 73.8 13 0.00046 30.8 8.1 33 411-443 8-40 (83)
284 3mkq_A Coatomer beta'-subunit; 73.0 12 0.00043 41.0 10.0 47 423-479 661-707 (814)
285 3mkq_A Coatomer beta'-subunit; 70.2 18 0.00063 39.7 10.5 81 414-515 681-761 (814)
286 1om2_A Protein (mitochondrial 69.9 7.4 0.00025 33.6 5.6 41 406-446 12-52 (95)
287 4h7y_A Dual specificity protei 63.3 17 0.00059 34.2 7.2 84 411-504 58-141 (161)
288 2v6x_A Vacuolar protein sortin 62.6 12 0.0004 31.0 5.4 32 412-443 11-42 (85)
289 4a5x_A MITD1, MIT domain-conta 62.5 11 0.00037 31.6 5.2 31 413-443 15-45 (86)
290 1wfd_A Hypothetical protein 15 61.4 12 0.00041 31.7 5.4 32 412-443 13-44 (93)
291 2cpt_A SKD1 protein, vacuolar 58.8 13 0.00045 33.0 5.3 32 412-443 16-47 (117)
292 3txn_A 26S proteasome regulato 58.6 88 0.003 33.1 12.7 71 411-481 136-209 (394)
293 4b4t_R RPN7, 26S proteasome re 56.7 26 0.00089 37.1 8.2 70 452-521 130-199 (429)
294 3spa_A Mtrpol, DNA-directed RN 55.6 1.1E+02 0.0038 36.8 13.9 96 414-519 127-230 (1134)
295 3mkr_B Coatomer subunit alpha; 55.5 34 0.0012 35.5 8.6 120 416-544 104-246 (320)
296 3mv2_A Coatomer subunit alpha; 54.5 28 0.00096 36.2 7.7 120 416-544 116-255 (325)
297 3mkq_B Coatomer subunit alpha; 54.0 32 0.0011 32.7 7.4 82 414-516 34-115 (177)
298 1qsa_A Protein (soluble lytic 47.8 57 0.0019 36.6 9.5 91 419-518 257-347 (618)
299 4fhn_B Nucleoporin NUP120; pro 47.4 1.1E+02 0.0036 36.6 12.3 91 420-519 818-928 (1139)
300 2vkj_A TM1634; membrane protei 47.3 69 0.0024 27.6 7.6 52 412-465 51-102 (106)
301 2crb_A Nuclear receptor bindin 42.9 1E+02 0.0035 26.6 8.0 33 490-522 15-47 (97)
302 3kae_A CDC27, possible protein 42.8 1.3E+02 0.0045 29.1 9.7 73 413-485 61-146 (242)
303 3opb_A SWI5-dependent HO expre 41.0 23 0.0008 41.0 5.0 57 132-191 450-507 (778)
304 2wb7_A PT26-6P; extra chromoso 40.4 67 0.0023 35.3 8.2 40 404-443 419-461 (526)
305 1oyz_A Hypothetical protein YI 40.0 17 0.00057 35.0 3.2 57 106-174 33-89 (280)
306 2crb_A Nuclear receptor bindin 38.4 49 0.0017 28.5 5.4 28 414-441 15-42 (97)
307 4b4t_S RPN3, 26S proteasome re 37.2 1E+02 0.0034 34.1 9.1 73 451-523 229-303 (523)
308 3myv_A SUSD superfamily protei 35.2 73 0.0025 33.8 7.5 51 432-482 166-219 (454)
309 1te4_A Conserved protein MTH18 33.7 19 0.00066 30.9 2.3 49 108-168 54-102 (131)
310 2cfu_A SDSA1; SDS-hydrolase, l 33.2 58 0.002 36.6 6.6 50 414-468 449-498 (658)
311 3ltj_A Alpharep-4; protein eng 32.5 30 0.001 31.4 3.5 29 139-168 108-136 (201)
312 3opb_A SWI5-dependent HO expre 32.0 25 0.00085 40.8 3.3 52 116-168 477-530 (778)
313 2w2u_A Hypothetical P60 katani 32.0 96 0.0033 25.6 6.2 30 492-521 21-50 (83)
314 3kez_A Putative sugar binding 31.4 81 0.0028 33.5 7.1 51 432-482 172-225 (461)
315 3lew_A SUSD-like carbohydrate 31.3 88 0.003 33.7 7.4 33 450-482 200-232 (495)
316 2v6y_A AAA family ATPase, P60 31.3 98 0.0034 25.4 6.1 29 493-521 14-42 (83)
317 3mcx_A SUSD superfamily protei 30.8 80 0.0027 33.6 7.0 53 431-483 177-232 (477)
318 3t5x_A PCI domain-containing p 30.6 1.6E+02 0.0053 28.1 8.3 59 412-470 12-70 (203)
319 3lpz_A GET4 (YOR164C homolog); 30.6 4.7E+02 0.016 27.0 12.7 25 489-513 135-159 (336)
320 3mkq_B Coatomer subunit alpha; 30.3 3.1E+02 0.011 25.8 10.2 78 422-512 13-98 (177)
321 3ltm_A Alpha-REP4; protein eng 29.9 54 0.0018 29.8 4.8 49 108-168 31-79 (211)
322 4gq2_M Nucleoporin NUP120; bet 29.4 2.1E+02 0.0071 33.5 10.7 91 420-519 816-926 (950)
323 3ltm_A Alpha-REP4; protein eng 26.7 57 0.002 29.7 4.3 15 31-45 28-42 (211)
324 4a5x_A MITD1, MIT domain-conta 26.7 1.1E+02 0.0038 25.4 5.7 31 492-522 18-48 (86)
325 1wfd_A Hypothetical protein 15 26.1 1.1E+02 0.0039 25.6 5.7 31 492-522 17-47 (93)
326 1te4_A Conserved protein MTH18 26.0 29 0.001 29.7 2.1 48 107-166 84-131 (131)
327 3hdx_A SUSD homolog, SUSD supe 25.5 1.3E+02 0.0045 32.0 7.5 34 449-482 193-226 (478)
328 3snx_A SUSD homolog, putative 25.1 1.1E+02 0.0037 32.6 6.8 32 450-481 188-219 (460)
329 4b4t_P 26S proteasome regulato 24.8 6.2E+02 0.021 26.5 16.8 71 411-482 174-247 (445)
330 1w63_A Adapter-related protein 24.2 87 0.003 34.4 5.9 31 138-169 313-343 (618)
331 2rpa_A Katanin P60 ATPase-cont 24.1 76 0.0026 26.3 4.1 30 414-443 12-41 (78)
332 4b4t_S RPN3, 26S proteasome re 23.4 86 0.003 34.6 5.6 71 413-485 230-302 (523)
333 1wy6_A Hypothetical protein ST 23.2 2.6E+02 0.0088 26.2 7.8 81 426-519 73-154 (172)
334 2cfu_A SDSA1; SDS-hydrolase, l 23.0 1.9E+02 0.0066 32.3 8.5 53 454-509 450-502 (658)
335 2v6x_A Vacuolar protein sortin 22.6 1.2E+02 0.0041 24.7 5.1 31 492-522 15-45 (85)
336 3ltj_A Alpharep-4; protein eng 22.0 74 0.0025 28.6 4.1 50 108-169 26-75 (201)
337 3qnk_A Putative lipoprotein; a 21.9 1.5E+02 0.0053 31.8 7.3 34 449-482 178-211 (517)
338 3pmr_A Amyloid-like protein 1; 21.3 2.3E+02 0.008 27.8 7.6 105 408-521 87-191 (219)
339 2cpt_A SKD1 protein, vacuolar 20.6 1.5E+02 0.0051 26.1 5.6 30 493-522 21-50 (117)
340 3k66_A Beta-amyloid-like prote 20.1 4.1E+02 0.014 26.4 9.1 105 408-521 82-188 (239)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=1.6e-18 Score=154.39 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
+|+.++.++++|+.+|++|+|++|++.|++||+++|. ++.+|.++|.||.++|++++|+.++++|++++|+ +
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~ 80 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---F 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---h
Confidence 3457899999999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV 537 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r 537 (604)
.++|+++|.++..+|++++|+.+|++++++.| .+..+...+.+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-----~~~~a~~~l~~ 123 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDP-----SNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-----CCHHHHHHHHH
Confidence 99999999999999999999999999999944 44444444433
No 2
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.77 E-value=2.2e-18 Score=156.61 Aligned_cols=141 Identities=24% Similarity=0.271 Sum_probs=112.9
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCc-----ccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKM-----RKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~-----~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
+....+..+++.|+.+|+.|+|++|+..|++||++ .|... .+..+.+|.|+|.||+++|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45567999999999999999999999999999999 22211 222889999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCC-CHHHHHHHHHHHHHhcCccchHHhh
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRV-KIPYYAAVMINKQMNATWPFIHAKS 554 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~-~i~~~l~rlikKqk~~~~l~~ea~r 554 (604)
|++||+++|+ ++++|+++|.+|..+|++++|+.+|++++++.| .+. .+...+..+..+..+.....+...+
T Consensus 86 ~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 157 (162)
T 3rkv_A 86 SSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-----AAASVVAREMKIVTERRAEKKADSRVTYS 157 (162)
T ss_dssp HHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHHHHTTSSCC---
T ss_pred HHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999944 343 4666676666666555544445555
Q ss_pred hhc
Q 046116 555 KMC 557 (604)
Q Consensus 555 Km~ 557 (604)
+|+
T Consensus 158 ~~f 160 (162)
T 3rkv_A 158 KMF 160 (162)
T ss_dssp ---
T ss_pred Hhc
Confidence 554
No 3
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.72 E-value=1.9e-17 Score=157.19 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL- 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL- 482 (604)
...+..+++.|+.+|+.|+|++|+..|++||+++|+ ...+.++.+|+|+|.|+.++|+|++|+.++++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 346899999999999999999999999999999998 333335669999999999999999999999999999
Q ss_pred ------CCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 483 ------SKTMSSHSKSL----WRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 483 ------dPd~~~n~KA~----~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
+|+ +.++| |++|.++..+|++++|+.+|++++++.|++.
T Consensus 88 n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 88 NRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 999 99999 9999999999999999999999999977644
No 4
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=3.1e-16 Score=139.24 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-- 488 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-- 488 (604)
.+.+..+++.|+.+|++|+|++|++.|++||+++|+ ++.+|.|+|.+|+.+|+|++|+.++++||+++|+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 457889999999999999999999999999999999 8999999999999999999999999999999987211
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
..++|+++|.++..+|++++|+..|+++++..
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 15799999999999999999999999999983
No 5
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.5e-16 Score=132.93 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|+.+++.|+|++|+..|+++|+++|. ++.+|.++|.+|.++|+|++|+.+++++++++|+ +..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHH
Confidence 5789999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCC-CCCCCHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKH-TNRVKIPYYAAV 537 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d-~~~~~i~~~l~r 537 (604)
++.+|.++..+|++++|+..|++++++.|+..+ |.+..+...+.+
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 999999999999999999999999999744322 233334444443
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=7.1e-15 Score=136.36 Aligned_cols=108 Identities=12% Similarity=-0.058 Sum_probs=102.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+...++.+..+...|..+++.|+|++|+..|+++++++|. ++.+|.++|.+|..+|+|++|+..+++|++++|+
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34445668889999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|+++|.+|..+|++++|+..|++++++.+
T Consensus 103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999944
No 7
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.9e-14 Score=130.86 Aligned_cols=105 Identities=24% Similarity=0.146 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
....+..+...|+.++..|+|++|+..|+++|+++|. ++.+|.++|.+|+.+|+|++|+.+++++++++|+ +
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~ 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---Y 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence 3457889999999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+|+++|.+|..+|++++|+..|++++++.|+
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999553
No 8
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=2.6e-14 Score=153.69 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=116.5
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ccchHHHHHHHHHHHHHcCCcHHHHHHHH
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM----------RKERIVLYSNRAQCYLMLKKPEAAISDTT 477 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~ 477 (604)
...+..+..++++|+.+++.|+|++|+..|++||+++|... ......+|.|+|.||+++|+|++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34566789999999999999999999999999999999820 11227999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhcCccchHHhhhhc
Q 046116 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNATWPFIHAKSKMC 557 (604)
Q Consensus 478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~~~l~~ea~rKm~ 557 (604)
+||+++|+ +.++|+++|.+|..+|++++|+.+|++++++. |.+..+...+..+..+..+.....+...++|+
T Consensus 342 ~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 342 KALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999994 45556777777776666554434444455554
Q ss_pred C
Q 046116 558 K 558 (604)
Q Consensus 558 k 558 (604)
.
T Consensus 414 ~ 414 (457)
T 1kt0_A 414 K 414 (457)
T ss_dssp -
T ss_pred h
Confidence 3
No 9
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=9.7e-14 Score=120.46 Aligned_cols=117 Identities=30% Similarity=0.358 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|+++++++|. ++.++.++|.+|..+|+|++|+.+++++++++|+ +..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHH
Confidence 4788999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAV 537 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~r 537 (604)
++.+|.++..+|++++|+..|+++++..|+.....+..+...+.+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876432223334444333
No 10
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.56 E-value=3.9e-14 Score=129.10 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+...|..++..|+|++|+..|++++.++|. ++.+|.++|.+|..+|+|++|+..++++++++|+ +
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~ 88 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-----DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---E 88 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---C
Confidence 3456788999999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999653
No 11
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=3.3e-14 Score=129.39 Aligned_cols=103 Identities=8% Similarity=-0.113 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
++.+..+...|+.+++.|+|++|++.|+++|+++|+ ++.+|.++|.+|..+|++++|+..++++++++|+ ++
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~ 99 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---QK 99 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---CH
Confidence 345677889999999999999999999999999999 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDA-LTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~-~kALkl~~ 521 (604)
.+++.+|.++..+|++++|...| ++++++.|
T Consensus 100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999988875 89999944
No 12
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=8.2e-14 Score=130.46 Aligned_cols=131 Identities=27% Similarity=0.316 Sum_probs=111.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc-----------hHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKE-----------RIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~-----------~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
..+....+..+...|+.++..|+|++|+..|.+++++.|...... ...++.++|.+|..+|+|++|+.+
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 356677889999999999999999999999999999998821100 138999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
++++++++|+ +.++++++|.++..+|++++|+..|++++++. |.+..+...+..+.....+.
T Consensus 111 ~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 111 ASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999993 44555666666655554443
No 13
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.55 E-value=6.6e-14 Score=125.03 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+...|..++..|+|++|+..|++++..+|+ ++.+|.++|.+|..+|+|++|+..++++++++|+ +
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~ 85 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---E 85 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---C
Confidence 3456788999999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+++.+|.++..+|++++|+..|+++++..|+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999664
No 14
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=3.6e-14 Score=146.26 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=110.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ccchHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM----------RKERIVLYSNRAQCYLMLKKPEAAISDTTR 478 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~----------~~~~a~l~~NRA~~ylkLgdy~eAI~D~~r 478 (604)
..+..+..+...|+.+++.|+|++|+..|++||+++|... ....+.+|.|+|.||+++|+|++|+.++++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556788999999999999999999999999999999820 111279999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHhc
Q 046116 479 ALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMNA 545 (604)
Q Consensus 479 ALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~~ 545 (604)
|++++|+ +.++++++|.+|..+|++++|+.+|++++++. |.+......+..+..+..+.
T Consensus 222 al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 222 ALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999994 44545666666655554443
No 15
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=5.5e-14 Score=147.86 Aligned_cols=130 Identities=22% Similarity=0.205 Sum_probs=109.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------cccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-----------MRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-----------~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
.++....+..++..|+.+++.|+|++|+..|++||++.|.. ..+..+.+|.|+|.||+++|+|++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 44556678899999999999999999999999999932220 1222899999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
+++|++++|+ +.++++++|.+|..+|++++|+.+|++++++. |.+..+...+..+..+..+
T Consensus 296 ~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 296 CLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999994 3444555555555544433
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=4.9e-13 Score=122.36 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+...++++.|+..+.+++.++|. +..++.++|.+|.++|++++|+..++++++++|+ ++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 143 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRA 143 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhH
Confidence 4677889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.+|..+|++++|+..|+++++..|+
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999654
No 17
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=5.1e-14 Score=145.43 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=98.0
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-----------------HHHHHHHHHHHHcCCcH
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-----------------VLYSNRAQCYLMLKKPE 470 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-----------------~l~~NRA~~ylkLgdy~ 470 (604)
++.+..+..++..|+.+++.|+|++|+..|.+|+.+.|. +. .+|.|+|.||+++|+|+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 456667899999999999999999999999999999998 44 49999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 471 AAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 471 eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
+|+.+|++||+++|+ +.++|+++|.+|..+|++++|+.+|++++++.| .+..+...+..+..+.+.
T Consensus 248 ~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-----~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 248 EAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-----DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999954 344455555555443333
No 18
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1e-12 Score=109.03 Aligned_cols=101 Identities=27% Similarity=0.355 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.+++...|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHH
Confidence 4678999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++..+|++++|+..|+++++..|
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999943
No 19
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=3.1e-12 Score=107.67 Aligned_cols=105 Identities=27% Similarity=0.311 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+..+..+...|..++..|+|++|+..|.+++...|. .+.++.++|.++..+|++++|+..+.++++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--- 78 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--- 78 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---
Confidence 45567889999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+++.+|.++..+|++++|+..|+++++..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999943
No 20
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-12 Score=110.40 Aligned_cols=102 Identities=27% Similarity=0.355 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+...|..++..|+|++|+..|.++++.+|. +..++.++|.+|..+|++++|+..++++++++|+ +..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chH
Confidence 46789999999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+++.+|.++..+|++++|+..|+++++..+
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999954
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=1.8e-12 Score=129.90 Aligned_cols=103 Identities=31% Similarity=0.396 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|+.++..|+|++|+..|++||+++|. ++.++.|+|.+|.++|+|++|+.++++|++++|+ +.+++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 678999999999999999999999999999999 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
+++|.+|..+|++++|+..|++++++.|++.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999999999987653
No 22
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=8.6e-13 Score=116.16 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+...|..+++.|++++|+..|.++++.+|+ ++.+|.++|.++..+|++++|+..+++|++++|+ +..+++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~ 89 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHA 89 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Confidence 34678999999999999999999999999999 8999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+|.++..+|++++|+..|+++++..|+
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999553
No 23
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-12 Score=111.70 Aligned_cols=104 Identities=30% Similarity=0.439 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|+++++++|+ ......++.++|.+|..+|+|++|+..++++++++|+ +..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHHH
Confidence 5788999999999999999999999999999998 1112899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++..+|++++|+..|+++++..|
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999943
No 24
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=3.8e-12 Score=107.47 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--- 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--- 489 (604)
.+..+...|..++..|+|++|+..|.++++.+|. .+.++.++|.+|..+|++++|+..++++++++|+ +
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE---NRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---STTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc---cchh
Confidence 5778999999999999999999999999999999 8999999999999999999999999999999988 6
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 490 ----SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 490 ----~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
..+++.+|.++..+|++++|+..|+++++..+ +......+..+...
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR------TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHH
Confidence 89999999999999999999999999999832 33344555544443
No 25
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=8.2e-12 Score=110.58 Aligned_cols=105 Identities=31% Similarity=0.367 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
.....+..+...|..++..|+|++|+..|.++++.+|. ++.++.++|.++..+|+|++|+..++++++++|+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--- 79 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 34557889999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+++.+|.++..+|++++|+..|+++++..+
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999944
No 26
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=3.5e-12 Score=121.38 Aligned_cols=101 Identities=18% Similarity=0.061 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHH----------------HHHHHHHcCCcHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSN----------------RAQCYLMLKKPEAAISDT 476 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~N----------------RA~~ylkLgdy~eAI~D~ 476 (604)
.++.+..+|..++..|+|++|+..|+++++++|+ ++.++.+ +|.+|..+|++++|+..+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3567889999999999999999999999999998 8888888 999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+++++++|+ +..+++.+|.++..+|++++|+..|++++++.|
T Consensus 78 ~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 78 KELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999 999999999999999999999999999999944
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=3.1e-12 Score=146.46 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=100.3
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
+..++.+..+.+.|+.+.+.|+|++|+..|++||+++|+ ++.+|.|+|.+|..+|++++|+..+++|++++|+
T Consensus 37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-- 109 (723)
T 4gyw_A 37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-- 109 (723)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 334456789999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+|+++|.+|..+|++++|+..|++++++.|
T Consensus 110 -~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 110 -FADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999944
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=6.2e-12 Score=120.49 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 411 ELSVFMLKQQGNQEFWA-----------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~-----------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
+..+..+...|..+... |++++|+..|+++++++|+ ++.++.++|.+|..+|++++|+..+++|
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-----YAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34567888899999999 9999999999999999999 8999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++++ + ++.+++.+|.++..+|++++|+..|+++++..|
T Consensus 145 l~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 145 LALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred Hhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999 8 899999999999999999999999999999843
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.1e-11 Score=114.86 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=100.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+..+..+...|..++..|+|++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--- 205 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--- 205 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---
Confidence 34557888999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+++.+|.++..+|++++|+..|+++++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999999999999643
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=6.6e-12 Score=107.69 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---HH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH---SK 491 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n---~K 491 (604)
..+...|..++..|+|++|+..|.++++..|+ ....+.++.++|.+|..+|+|++|+..++++++++|+ + ..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~ 77 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAG 77 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHH
Confidence 34678899999999999999999999999998 1222379999999999999999999999999999999 8 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+++.+|.++..+|++++|+..|+++++..|
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999954
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.6e-11 Score=116.82 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
..+.|..+++.|+|++|+..|+++|+++|+ ++.++.++|.+|..+|++++|+..++++++++|+ +..+++.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~l 128 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFL 128 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Confidence 344999999999999999999999999999 8999999999999999999999999999999999 99999888
Q ss_pred HHHHHHcC
Q 046116 497 SQAYDMMG 504 (604)
Q Consensus 497 G~a~~~LG 504 (604)
|.+|+..|
T Consensus 129 g~~~~~~~ 136 (208)
T 3urz_A 129 GNYYYLTA 136 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88876554
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=4.8e-12 Score=144.93 Aligned_cols=105 Identities=23% Similarity=0.134 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..++.+.+.|+.+.++|+|++|+..|++||+++|+ ++.+|.|+|.+|.++|++++|+..+++|++++|+ +
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~ 76 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---F 76 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Confidence 4567899999999999999999999999999999999 9999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+|+++|.+|..+|++++|+..|++++++.|+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.36 E-value=5.7e-12 Score=120.75 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-----------CCcHHHHHHHHHH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-----------KKPEAAISDTTRA 479 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-----------gdy~eAI~D~~rA 479 (604)
+..+..+...|..+++.|++++|+..|+++++++|+ ++.++.++|.++..+ |++++|+..++++
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-----YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 346788999999999999999999999999999999 899999999999999 9999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 480 LSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 480 LeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
++++|+ +..+++.+|.++..+|++++|+..|++++++.
T Consensus 111 l~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 111 ERVNPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999999 99999999999999999999999999999993
No 34
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.9e-13 Score=110.62 Aligned_cols=95 Identities=27% Similarity=0.294 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--- 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--- 489 (604)
.+..+...|+.++..|+|++|+..|+++++++|. ++.++.++|.+|..+|+|++|+.+++++++++|+ +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST---AEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS---TTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ccHH
Confidence 4678999999999999999999999999999999 8999999999999999999999999999999999 8
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046116 490 ---SKSLWRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 490 ---~KA~~rrG~a~~~LGd~dEAL~d~~k 515 (604)
.++++++|.++..+|++++|+..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999988887766543
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=3.1e-12 Score=135.60 Aligned_cols=109 Identities=9% Similarity=0.057 Sum_probs=98.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGY-IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~Gd-yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP 484 (604)
.+...+..+..+..+|..+...|+ |++|+..|++||+++|+ ++.+|++||.++..+|++++|+.++++||+++|
T Consensus 123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 344455678889999999999996 99999999999999999 899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+ +..+|+.+|.++..+|++++|+..|+++|++.|+
T Consensus 198 ~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 198 K---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp T---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred c---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9 9999999999999999999999999999999543
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=1e-11 Score=117.73 Aligned_cols=100 Identities=24% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP-LKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P-~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
+..+...|..++..|+|++|+..|+++++++| . +..++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 47899999999999999999999999999998 6 7889999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++..+|++++|+..|+++++..|
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999944
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=8.2e-11 Score=98.06 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|..++..|++++|+..|.+++...|. ...++.++|.++...|++++|+..++++++++|+ +..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHH
Confidence 677889999999999999999999999999998 7899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+|.++..+|++++|+..|+++++..|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999843
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.6e-12 Score=118.27 Aligned_cols=112 Identities=9% Similarity=-0.025 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQA 499 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a 499 (604)
.|..+..+|++++||+.|.+++...|+ ++..++++|.+|+++|+|++|+..++++++++|+ ++.+|+.+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 577788899999999999999999998 8999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 500 YDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 500 ~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
|..+|++++|+..|++++++. |.+......+..+..+..+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELN-----PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCS
T ss_pred HHHcCchHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999994 4454555555555554443
No 39
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=7.3e-11 Score=107.64 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHhcCCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-YLMLKKP--EAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-ylkLgdy--~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+ |...|++ ++|+..++++++++|+ +
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~ 114 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---E 114 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---C
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---c
Confidence 4678899999999999999999999999999999 89999999999 8899999 9999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..+++.+|.++..+|++++|+..|+++++..|
T Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999944
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.27 E-value=2.4e-11 Score=128.80 Aligned_cols=106 Identities=11% Similarity=-0.000 Sum_probs=101.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~rALeLdPd~~ 487 (604)
..+..+..+...|..+.+.|+|++|+..|+++|+++|. +..+|.+||.++..+|+ +++|+.++++||+++|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-- 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-- 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--
Confidence 34567889999999999999999999999999999999 99999999999999997 99999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 165 -~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 165 -NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999553
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=6.7e-11 Score=111.98 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH---
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS--- 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~--- 490 (604)
...+...|..++..|+|++|+..|.++++++|. .+.++.++|.+|..+|++++|+..++++++++|+ +.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 113 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIE 113 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHH
Confidence 356677999999999999999999999999999 9999999999999999999999999999999999 88
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 ----KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 ----KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+|+.+|.++..+|++++|+..|+++++..|
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 7799999999999999999999999999944
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=1.5e-10 Score=105.62 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..+++.|++++|+..+.+++...|. .+.++.++|.++...++++.|+..+.++++++|+ +.
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~ 107 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-----SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV---YA 107 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---ch
Confidence 345778899999999999999999999999999999 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+++.+|.++..+|++++|+..|+++++..|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 9999999999999999999999999999943
No 43
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.26 E-value=6e-11 Score=110.38 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH---
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS--- 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~--- 490 (604)
+..+...|..++..|+|++|+..|.++++++|. .+.++.++|.+|..+|++++|+.++++++++.|+ +.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~ 108 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG---NQLID 108 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT---CSEEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---ccHHH
Confidence 568999999999999999999999999999999 8999999999999999999999999999998887 55
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 491 -------------KSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 491 -------------KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+++.+|.++..+|++++|+..|+++++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999554
No 44
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.25 E-value=6.1e-12 Score=108.59 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 046116 426 WAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM 502 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~ 502 (604)
..|+|++|+..|.++|++ +|. .+.++.++|.+|..+|+|++|+..++++++++|+ +..+++.+|.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHH
Confidence 468999999999999999 577 8999999999999999999999999999999999 99999999999999
Q ss_pred cCCHHHHHHHHHHHHhchh
Q 046116 503 MGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 503 LGd~dEAL~d~~kALkl~~ 521 (604)
+|++++|+..|+++++..|
T Consensus 74 ~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999954
No 45
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=5.5e-11 Score=97.79 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|..++..|+|++|+..|.++++++|. ...++.++|.+|..+|++++|+..++++++++|+ ..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-----ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH
Confidence 445678899999999999999999999999999 8999999999999999999999999999999987 3358899
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMM-GLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~L-Gd~dEAL~d~~kALkl~~ 521 (604)
+.+|.++..+ |++++|+..++++++..|
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999999954
No 46
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=1.4e-11 Score=133.49 Aligned_cols=114 Identities=29% Similarity=0.322 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+.+..+...|+.+++.|+|++|++.|++|++++|+ .+.++.++|.+|.++|+|++|+.++++|++++|+ +..
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~ 75 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIK 75 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHH
Confidence 45777888999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHH
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVM 538 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rl 538 (604)
+++++|.+|..+|++++|+..|+++++..| .+......+...
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~l~~~ 117 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKP-----HDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence 999999999999999999999999999944 444455555544
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.8e-10 Score=119.91 Aligned_cols=102 Identities=29% Similarity=0.388 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+.+..+...|+.+++.|+|++|+..|++++..+|+ +.++.++|.+|.++|++++|+.+++++++++|+ +.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~ 73 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YS 73 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HH
Confidence 457899999999999999999999999999999986 789999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+++.+|.++..+|++++|+..|+++++..+
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999954
No 48
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.21 E-value=1.4e-10 Score=116.93 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 283 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-----DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---FIRS 283 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHH
Confidence 3567889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
++.+|.++..+|++++|+..|++++++.|+..
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999977654
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.21 E-value=2.7e-10 Score=111.91 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
........|..++..|++++|+..|+++++..|. .......++.++|.+|.++|++++|+..++++++++|+ ++.+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 308 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHH
Confidence 3455667899999999999999999999999998 22223356888999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQ 542 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKq 542 (604)
++.+|.++..+|++++|+..|+++++.. |.+..+...+.+.....
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-----ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 44444555555554433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.21 E-value=1.7e-10 Score=110.10 Aligned_cols=103 Identities=19% Similarity=0.095 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+ +.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~ 111 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YN 111 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CT
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---cc
Confidence 456889999999999999999999999999999999 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+++.+|.++..+|++++|+..|+++++..|
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999844
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.5e-10 Score=112.40 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+++.|+|++|+..|.++++..|. ....+.+++++|.+|+++|+|++|+..+++++++.|+......+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 5788999999999999999999999999999998 12238999999999999999999999999999999874446889
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDM--------MGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~--------LGd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.++.. +|++++|+..|+++++..|+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 9999999999 99999999999999999553
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=1.1e-10 Score=103.57 Aligned_cols=83 Identities=11% Similarity=0.087 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+...|..+++.|+|++|+..|++||+++|+ ++.+|.++|.+|..+|++++|+.+++++++++|+ +
T Consensus 43 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---~ 114 (126)
T 4gco_A 43 DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-----FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS---N 114 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC---C
Confidence 3446789999999999999999999999999999999 8999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHH
Q 046116 490 SKSLWRRSQAY 500 (604)
Q Consensus 490 ~KA~~rrG~a~ 500 (604)
..++..++.++
T Consensus 115 ~~a~~~l~~~l 125 (126)
T 4gco_A 115 EEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999888764
No 53
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=4e-10 Score=112.53 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|++++|+..|.+++++.|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~ 287 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRS 287 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Confidence 4678899999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++.+|.++..+|++++|+..|+++++..|+.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999997765
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=2.1e-10 Score=106.68 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|+.++..|+|++|+..|++++ .| .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~ 73 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVA 73 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHH
Confidence 46678899999999999999999999995 44 4789999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
++.+|.++..+|++++|+..|+++++..++
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998553
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=1.4e-09 Score=103.25 Aligned_cols=99 Identities=10% Similarity=-0.053 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|++++|+..|.++++..|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 211 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-----QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ---NARS 211 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHH
Confidence 3455556666666666666666666666666666 5666666666666666666666666666666666 6666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++.++.++..+|++++|+..++++++.
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666666666666666666665
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=5.8e-10 Score=99.03 Aligned_cols=103 Identities=17% Similarity=0.061 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|++++|+..|.++++..|. .+.++.++|.++..+|++++|+..++++++++|+ +..+
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 146 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKV 146 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHH
Confidence 3567888999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++.+|.++..+|++++|+..++++++..++.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999996643
No 57
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.1e-09 Score=109.54 Aligned_cols=111 Identities=7% Similarity=-0.159 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116 413 SVFMLKQQGNQEFWA-GYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-- 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~-GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-- 488 (604)
.+..+.+.|..+... |+|++|+..|++|+++.|... ....+.++.++|.+|..+|+|++|+..++++++++|+...
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 477889999999997 999999999999999988521 1123678999999999999999999999999999998321
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
...+++++|.++..+|++++|+..|++++++.|..
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 12378999999999999999999999999996643
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=7.8e-11 Score=132.91 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=100.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
++..+..+..+...|..++..|+|++|+..|++|++++|+ ++.++.|+|.+|.++|+|++ +.++++|++++|+
T Consensus 460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~- 532 (681)
T 2pzi_A 460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-----ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG- 532 (681)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-
T ss_pred hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-
Confidence 3445556889999999999999999999999999999999 89999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+++++|.++..+|++++|+..|++++++.|+
T Consensus 533 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 533 --VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999999999543
No 59
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.15 E-value=3.9e-09 Score=107.39 Aligned_cols=97 Identities=24% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+...|..+...|+|++|+..|.+++.++|+ ++.++.++|.+|..+|++++|+..++++++++|+ ++.+++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 275 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYC 275 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHH
Confidence 33444444444444444444444444444444 4445555555555555555555555555555555 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+|.++...|++++|+..|+++++.
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555555555555555555544
No 60
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.15 E-value=5.5e-11 Score=112.65 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=82.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKP----------EAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy----------~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
+.+.|++|+..|.++++++|+ ++..|.|+|.++..++++ ++||..+++||+++|+ +..+||+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~ 85 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence 446799999999999999999 999999999999999886 5999999999999999 9999999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHhchh
Q 046116 496 RSQAYDMMG-----------LAKESLMDALTFIGSRM 521 (604)
Q Consensus 496 rG~a~~~LG-----------d~dEAL~d~~kALkl~~ 521 (604)
+|.+|..+| ++++|+..|++|+++.|
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 999999985 89999999999999954
No 61
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.14 E-value=4e-10 Score=110.73 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.++.+...|+.++..|+|++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchH
Confidence 3678999999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++..+|++++|+..|+++++..|
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999954
No 62
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=9.2e-10 Score=92.16 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+...|..++..|++++|+..|.+++...|. ....+.++|.++...|++++|+..++++++.+|+ +..++
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 106 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAW 106 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHH
Confidence 556778899999999999999999999999998 7899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+|.++...|++++|+..|+++++..|
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999998844
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=2.6e-10 Score=122.74 Aligned_cols=117 Identities=12% Similarity=-0.003 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc--------CCcHHHHHHH
Q 046116 414 VFMLKQQGNQEFWA---------GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML--------KKPEAAISDT 476 (604)
Q Consensus 414 A~~lk~~GN~lfk~---------GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL--------gdy~eAI~D~ 476 (604)
...+...|..++.. |+|++|+..|.+|++++|+ ++.+|.++|.+|..+ |++++|+..+
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 47889999999999 9999999999999999999 899999999999999 9999999999
Q ss_pred HHHHhcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 477 TRALSLSK---TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 477 ~rALeLdP---d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
++|++++| + ++.+++.+|.+|..+|++++|+..|++++++.| .+......+..+.....
T Consensus 245 ~~al~~~p~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 245 AQAEKVDRKASS---NPDLHLNRATLHKYEESYGEALEGFSQAAALDP-----AWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHCGGGGG---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHH
Confidence 99999999 8 999999999999999999999999999999943 44444455555544433
No 64
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.14 E-value=2.6e-10 Score=119.86 Aligned_cols=106 Identities=32% Similarity=0.455 Sum_probs=96.3
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
.+....+..+...|+.+++.|+|++|+..|+++++.+|+ ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus 19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 91 (537)
T 3fp2_A 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-- 91 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--
T ss_pred chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--
Confidence 344567899999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+++.+|.++..+|++++|+..|+ ++...++
T Consensus 92 -~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 92 -HSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence 99999999999999999999999996 8877553
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-09 Score=102.92 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------cccchHHHHHHHHHHHHHcCCcHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK---------------------MRKERIVLYSNRAQCYLMLKKPEA 471 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~---------------------~~~~~a~l~~NRA~~ylkLgdy~e 471 (604)
.+..+...|..++..|++++|+..|.+++++.|.. ..+..+.++.++|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 36778888888888888888888888888854430 122378899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 472 AISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|+..++++++++|+ +..+++.+|.++..+|++++|+..|+++++..|
T Consensus 158 A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 158 AVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99999999999999 999999999999999999999999999999843
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.11 E-value=1.1e-09 Score=102.68 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+...|..++..|++++|+..|.++++..|. ++.++.++|.++...|++++|+..++++++++|+ +..++
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 196 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---HADAF 196 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHH
Confidence 456777888888888888888888888888888 7888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+|.++..+|++++|+..|+++++..|
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888888888888888888888843
No 67
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=7.3e-10 Score=94.51 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 046116 431 EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESL 510 (604)
Q Consensus 431 eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL 510 (604)
++|+..|.++++.+|+ ++.++.++|.+|..+|++++|+..++++++++|+ +..+++.+|.++..+|++++|+
T Consensus 2 ~~a~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHH
Confidence 3689999999999999 8999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhchhhc
Q 046116 511 MDALTFIGSRMKC 523 (604)
Q Consensus 511 ~d~~kALkl~~~~ 523 (604)
..|+++++..+..
T Consensus 74 ~~~~~al~~~~~~ 86 (115)
T 2kat_A 74 QAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 9999999996653
No 68
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=4.6e-10 Score=122.20 Aligned_cols=101 Identities=11% Similarity=-0.022 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|++.|+++++++|+ ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 93 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGI 93 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence 4567777888888888888888888888888887 7778888888888888888888888888888888 7888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.+|..+|++++|+..|+++++..+
T Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 94 ALWLGHALEDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888887733
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.1e-09 Score=91.63 Aligned_cols=98 Identities=22% Similarity=0.237 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+...|..++..|++++|+..|.++++..|. ....+.++|.++...|++++|+..++++++++|+ +..+++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHH
Confidence 35678899999999999999999999999998 7899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
.+|.++...|++++|+..++++++..
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999983
No 70
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.10 E-value=2.3e-09 Score=104.59 Aligned_cols=119 Identities=19% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc----cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR----KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~----~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
.+..+...|..++..|++++|+..|.+++++.|.... +..+.++.++|.+|..+|++++|+..++++++++|+
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--- 268 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--- 268 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---
Confidence 4667888999999999999999999999998632110 125788899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
+..+++.+|.++..+|++++|+..|+++++.. |.+......+...+
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-----RDDTFSVTMLGHCI 314 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-----SCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-----CCchHHHHHHHHHH
Confidence 88999999999999999999999999999883 34444444444433
No 71
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.10 E-value=5.2e-09 Score=106.45 Aligned_cols=104 Identities=19% Similarity=0.102 Sum_probs=92.5
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+..+..+...|..++..|++++|+..|.+++++.|+ .+.++.++|.+|.+.|++++|+..++++++++|+
T Consensus 232 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 303 (388)
T 1w3b_A 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--- 303 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---
Confidence 34445677888899999999999999999999999998 7889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
+..+++.+|.++...|++++|+..|+++++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999883
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.10 E-value=1.5e-09 Score=101.62 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|++++|+..|.++++..|. ...++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 161 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEA 161 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHH
Confidence 4677889999999999999999999999999999 8899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+|.++...|++++|+..|+++++..+
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999843
No 73
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.10 E-value=1.1e-09 Score=87.98 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHH
Confidence 5678889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcC
Q 046116 493 LWRRSQAYDMMG 504 (604)
Q Consensus 493 ~~rrG~a~~~LG 504 (604)
++.+|.++..+|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.10 E-value=2e-09 Score=95.59 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|++++|+..|.++++..|. .+.++.++|.++...|++++|+..++++++++|+ +..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 112 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNV 112 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHH
Confidence 3667889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
++.+|.++..+|++++|+..++++++..
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999984
No 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.10 E-value=3.3e-09 Score=106.94 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 046116 422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYD 501 (604)
Q Consensus 422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~ 501 (604)
+.+...|++++|+..|+++++.+|+ ++.+++++|.++.++|++++|+..++++++++|+ ++.+++++|.++.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSP-----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---HPETLINLVVLSQ 245 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 3344568999999999999999999 8999999999999999999999999999999999 9999999999999
Q ss_pred HcCCHHHH-HHHHHHHHhchh
Q 046116 502 MMGLAKES-LMDALTFIGSRM 521 (604)
Q Consensus 502 ~LGd~dEA-L~d~~kALkl~~ 521 (604)
.+|+++++ ...+++++++.|
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHHHHHHhCC
Confidence 99999875 578899999944
No 76
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.10 E-value=8.7e-09 Score=105.98 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
......|..++..|++++|+..|++++++.|. .......++.++|.++.++|++++|+..++++++++|+ +..+++
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~ 333 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHH
Confidence 34566799999999999999999999999998 12222568999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 495 RRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 495 rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
.+|.++..+|++++|+..|++++++. |.+......+....
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-----ENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-----cchHHHHHHHHHHH
Confidence 99999999999999999999999994 44444555555443
No 77
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.09 E-value=7.4e-10 Score=113.97 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=99.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+..+..+...|..+++.|+|++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 92 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--- 92 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 34457889999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+++.+|.+|..+|++++|+..|+++++..|
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999844
No 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.09 E-value=1.5e-09 Score=105.82 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|++++|+..|.++++.+|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 242 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-----DAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRV 242 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHH
Confidence 4678899999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++.+|.++..+|++++|+..|+++++..+..
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999996653
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.09 E-value=7.8e-10 Score=111.35 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..+++.|+|++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-----DAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH
Confidence 3556889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
++.+|.+|..+|++++|+..|+++++..|+..
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999999976543
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=1.6e-09 Score=103.78 Aligned_cols=107 Identities=11% Similarity=0.055 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|..+++.|+|++|+..|+++++..|. ......++.++|.+|.++|+|++|+..++++++++|+......++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 567889999999999999999999999999987 223467999999999999999999999999999999922223489
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHhchhh
Q 046116 494 WRRSQAYDM------------------MGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 494 ~rrG~a~~~------------------LGd~dEAL~d~~kALkl~~~ 522 (604)
+.+|.++.. +|++++|+..|+++++..|+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 999999987 57999999999999999654
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.08 E-value=1.7e-09 Score=99.57 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=85.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--cC
Q 046116 407 MKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-KKPEAAISDTTRALS--LS 483 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALe--Ld 483 (604)
++..+.....+...|..++..|++++|+..|.++++..|. ...++.++|.+|..+ |++++|+..++++++ .+
T Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-----SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence 3344455677788888888888888888888888888888 788888888888888 888888888888888 45
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|. +..+++.+|.++..+|++++|+..|+++++.
T Consensus 110 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 110 PT---PYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp SC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55 6788888888888888888888888888887
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=5.5e-09 Score=101.27 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHhcCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM--------LKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk--------Lgdy~eAI~D~~rALeLdPd 485 (604)
...+...|..+++.|+|++|+..|+++++..|+ ....+.+++++|.+|.. +|++++|+..++++++++|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 778999999999999999999999999999986 23367899999999999 99999999999999999999
Q ss_pred CCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 486 MSSHSKSL--------------WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 486 ~~~n~KA~--------------~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
......++ +.+|.+|..+|++++|+..|+++++..|+
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 22223333 99999999999999999999999999553
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.06 E-value=3.4e-09 Score=97.48 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=97.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 407 MKENELSVFMLKQQGNQEFWA-GYIEEAVKKYSKALD--LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~-GdyeeAIe~YtkALe--l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
+...+.....+...|..++.. |++++|+..|.++++ ..|. ...++.++|.++..+|++++|+..++++++.+
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 333445677888999999999 999999999999999 5565 78999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|+ +..+++.+|.++..+|++++|+..++++++..+
T Consensus 144 ~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 144 PQ---FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99 999999999999999999999999999999844
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.05 E-value=5.8e-09 Score=98.94 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALD--LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALe--l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
....+...|..++..|++++|+..|.++++ ..|. .+.++.++|.+|..+|++++|+..++++++++|+ +.
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE-----RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QP 175 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cH
Confidence 356788999999999999999999999999 7777 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
.+++.+|.++..+|++++|+..|+++++..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999983
No 85
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.05 E-value=2e-08 Score=97.82 Aligned_cols=115 Identities=10% Similarity=-0.084 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---------C
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS---------K 484 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd---------P 484 (604)
...+...|..++..|++++|+..|+++++..|. ++.++.++|.+|..+|++++|+..+++++++. |
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 455667888889999999999999999999888 78888899999999999999999999999886 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
. +..+++.+|.++..+|++++|+..|+++++.. |.+......+.....+
T Consensus 234 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 234 K---WEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQNASTYSAIGYIHSL 282 (330)
T ss_dssp T---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHH
Confidence 4 67888899999999999999999999998883 3344444455444443
No 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.04 E-value=2e-09 Score=110.73 Aligned_cols=101 Identities=14% Similarity=0.017 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+.+.|..+++.|+|++|+..|++||+++|. ++.+|+++|.+|..+|+|++|+.++++|++++|+ +.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~ 264 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NK 264 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CH
Confidence 335788999999999999999999999999999999 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKES-LMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEA-L~d~~kALkl 519 (604)
.+++.+|.++..+|++++| ...|++.+..
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 4567777765
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.04 E-value=1.9e-09 Score=103.16 Aligned_cols=109 Identities=9% Similarity=-0.039 Sum_probs=91.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.++..+..+..+...|..++..|+|++|+..|.++++ .|. .....+.+|.++|.+|..+|++++|+..++++++++|+
T Consensus 29 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 29 LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN-ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC-chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 3444555666788899999999999999999999998 443 23335677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..+++.+|.++..+|++++|+..|+++++.
T Consensus 107 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 107 ---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred ---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999988
No 88
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.03 E-value=2.1e-09 Score=107.34 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|..++..|+|++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+ +..++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 135 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-----HMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTAL 135 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHH
Confidence 456789999999999999999999999999999 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
+.+|.++..+|++++|+..|+++++..++..
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 9999999999999999999999999966543
No 89
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=3e-09 Score=93.90 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~ 117 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA 117 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHH
Confidence 4678889999999999999999999999999999 8999999999999999999999999999999999 8888
Q ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 L--WRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~--~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+ +.++..+...|++++|+..+.++......
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 8 44555588999999999999998877543
No 90
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.03 E-value=6.8e-10 Score=91.78 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV-LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRR 496 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~-l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rr 496 (604)
.++|..++..|+|++|+..|+++++.+|. ++. ++.++|.+|..+|++++|+..++++++++|+ +..++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD---SPALQAR- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH-
Confidence 56899999999999999999999999999 888 9999999999999999999999999999999 8888755
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 497 SQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 497 G~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+.+.+++..|+++++..|..
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCC
T ss_pred -------HHHHHHHHHHHHHhccCccc
Confidence 67888899999888886643
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=2.2e-09 Score=116.87 Aligned_cols=103 Identities=13% Similarity=-0.065 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+...|..++..|+|++|++.|.++++++|+ ++.++.++|.+|..+|++++|+..++++++++|+ +..
T Consensus 55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 126 (568)
T 2vsy_A 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---EPY 126 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH
Confidence 35778999999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMM---GLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~L---Gd~dEAL~d~~kALkl~~~ 522 (604)
+++.+|.++..+ |++++|+..|+++++..+.
T Consensus 127 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 999999999999 9999999999999999654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=3.7e-10 Score=127.34 Aligned_cols=102 Identities=16% Similarity=0.017 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|+ +.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~ 501 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---EL 501 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CS
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Ch
Confidence 345778999999999999999999999999999999 8999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+++.+|.++..+|++++ +..|++++++.|
T Consensus 502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 502 APKLALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 999999999999999999 999999999944
No 93
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.99 E-value=9.2e-09 Score=98.10 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+..+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4667889999999999999999999999999999 7899999999999999999999999999999998
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=2.9e-09 Score=97.93 Aligned_cols=107 Identities=9% Similarity=-0.073 Sum_probs=86.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY-LMLKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y-lkLgdy~eAI~D~~rALeLdP 484 (604)
.++..+..+..+...|..+...|++++|+..|.+++...|+ +..+...+.+. ...++..+|+..++++++++|
T Consensus 32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P 105 (176)
T 2r5s_A 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD------NSYKSLIAKLELHQQAAESPELKRLEQELAANP 105 (176)
T ss_dssp SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST
T ss_pred HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC------hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC
Confidence 34456777888899999999999999999999999888883 33444444332 233455568999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+ +..+++.+|.++..+|++++|+..|+++++..|
T Consensus 106 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 106 D---NFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 9 999999999999999999999999999999954
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=5.7e-09 Score=104.56 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHH----------------------
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEA---------------------- 471 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~e---------------------- 471 (604)
...+...|..+...|++++|+..|+++++.+|+ ++.++.++|.+|+.+|++++
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 345556666666666666666666666666666 55666666666666665555
Q ss_pred ------------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHH
Q 046116 472 ------------AISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMI 539 (604)
Q Consensus 472 ------------AI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rli 539 (604)
|+..++++++++|+ +..+++.+|.++...|++++|+..|+++++..|+.. +......+..++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~---~~~a~~~l~~~~ 265 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA---DGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG---GGHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc---cchHHHHHHHHH
Confidence 45666777888999 999999999999999999999999999999955321 133444444444
Q ss_pred HH
Q 046116 540 NK 541 (604)
Q Consensus 540 kK 541 (604)
..
T Consensus 266 ~~ 267 (287)
T 3qou_A 266 AA 267 (287)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 96
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.98 E-value=4.1e-09 Score=100.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+...|..+...|++++|+..|.++++++|. .+.++.++|.+|..+|++++|+..++++++++|+ +..++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~ 145 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT---DPKVF 145 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC---CHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC---cHHHH
Confidence 567899999999999999999999999999999 8899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 494 WRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+|...+..+++++|+..|+++++..|
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999666666799999999999999944
No 97
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.97 E-value=3e-09 Score=114.53 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhc
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML---------KKPEAAISDTTRALSL 482 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL---------gdy~eAI~D~~rALeL 482 (604)
..+..+...|..++..|+|++|+..|.+|++++|+ ..++.++|.+|..+ |++++|+..+++|+++
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999997 59999999999999 9999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhchh
Q 046116 483 SKTMSSHSKSLWRRSQAYDMM--------GLAKESLMDALTFIGSRM 521 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~L--------Gd~dEAL~d~~kALkl~~ 521 (604)
+|+ +..+++.+|.+|..+ |++++|+..|++++++.|
T Consensus 209 ~p~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 209 DVL---DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp CTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred CCC---CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 999 999999999999999 999999999999999955
No 98
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.97 E-value=6e-09 Score=94.14 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+.+.|..+++.|+|++|+..|++||+++|. ++.+|+++|.+|..+|+|++|+.+++++++++|+ +
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~ 130 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA---A 130 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---G
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC---C
Confidence 5567789999999999999999999999999999999 8999999999999999999999999999999999 8
Q ss_pred H-HHHHHHHHHHHHcC
Q 046116 490 S-KSLWRRSQAYDMMG 504 (604)
Q Consensus 490 ~-KA~~rrG~a~~~LG 504 (604)
. .....++.+...++
T Consensus 131 ~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 131 ASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7 44555555554443
No 99
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.96 E-value=7.8e-09 Score=100.65 Aligned_cols=103 Identities=13% Similarity=-0.024 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+..+|..++..|+|++|+..|+++++.+|. .+.++.++|.++..+|++++|+..++++++++|+ +..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHH
Confidence 3456789999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
++.+|.++..+|++++|+..|+++++..++.
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999986543
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=6.4e-09 Score=96.15 Aligned_cols=72 Identities=18% Similarity=0.070 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
..+..+..+...|..++..|+|++|+..|.+|++++|+ ++.+|+|+|.||..+|++++|+..+++|++++|+
T Consensus 65 ~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-----~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-----DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34456889999999999999999999999999999999 8999999999999999999999999999999999
No 101
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=2.7e-08 Score=96.08 Aligned_cols=103 Identities=22% Similarity=0.106 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
+..+..+...|..++..|++++|+..|.+++++ .|. .+.++.++|.+|..+|++++|+..+++++++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-----VAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998 555 7889999999999999999999999999985
Q ss_pred -------------------------------------------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 483 -------------------------------------------------SKTMSSHSKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 483 -------------------------------------------------dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
+|. ...+++.+|.+|..+|++++|+..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT---VTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH---HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 355 7889999999999999999999999
Q ss_pred HHHHhchh
Q 046116 514 LTFIGSRM 521 (604)
Q Consensus 514 ~kALkl~~ 521 (604)
++++++.+
T Consensus 302 ~~al~l~~ 309 (311)
T 3nf1_A 302 EAAMRSRK 309 (311)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99999844
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=4.7e-09 Score=104.88 Aligned_cols=111 Identities=13% Similarity=-0.082 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCCCC-
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLML-KKPEAAISDTTRALSLSKTMSS- 488 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkL-gdy~eAI~D~~rALeLdPd~~~- 488 (604)
..+..+.+.|+.+...|+|++|+..|++||++.|... ....+..+.++|.+|... |++++|+..+++|+++.|+...
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 3578899999999999999999999999999987511 112367899999999995 9999999999999999886110
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 489 --HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 489 --n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
...++.++|.++..+|++++|+..|+++++..++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 1568999999999999999999999999999553
No 103
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.94 E-value=1.7e-08 Score=106.08 Aligned_cols=104 Identities=12% Similarity=-0.089 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++++|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 380 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---LPEV 380 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHH
Confidence 4567899999999999999999999999999999 7899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
++.+|.++..+|++++|+..|+++++..++..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99999999999999999999999999977654
No 104
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=7.2e-09 Score=86.86 Aligned_cols=86 Identities=16% Similarity=0.067 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|++++|+..|.++++..|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~ 116 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETY 116 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHH
Confidence 3668889999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCH
Q 046116 493 LWRRSQAYDMMGLA 506 (604)
Q Consensus 493 ~~rrG~a~~~LGd~ 506 (604)
++.+|.++..+|++
T Consensus 117 ~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 117 KSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999875
No 105
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=1.1e-08 Score=96.94 Aligned_cols=107 Identities=18% Similarity=-0.032 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC-----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--- 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~-----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--- 482 (604)
+..+..+...|..++..|+|++|+..|.+++++. ++ ....+.++.++|.+|..+|++++|+..+.+++++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999984 22 2237899999999999999999999999999998
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 483 -----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 483 -----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+|. ...+++.+|.++..+|++++|+..|+++++....
T Consensus 118 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 118 VLGKFHPD---VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHCTTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 466 8899999999999999999999999999998443
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.89 E-value=1.2e-08 Score=104.40 Aligned_cols=110 Identities=13% Similarity=-0.006 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cC-
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-----LS- 483 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-----Ld- 483 (604)
...+..+...|..+...|+|++|+..|.+|+++.|.. .....+.++.|+|.+|..+|++++|+..+++|++ .+
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 3467889999999999999999999999999986541 1334567999999999999999999999999999 45
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
|. ...+++.+|.++..+|++++|+..++++++..+..
T Consensus 261 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 261 PS---LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp GG---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 77 89999999999999999999999999999996543
No 107
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.89 E-value=8.4e-09 Score=87.17 Aligned_cols=83 Identities=8% Similarity=-0.098 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCH
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKI 531 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i 531 (604)
++.+++++|.+|+.+|+|++|+..++++++++|+ +..+|+.+|.+|..+|++++|+..|++++++.++.. +...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~ 79 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG---TQKD 79 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS---CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC---chhH
Confidence 8999999999999999999999999999999999 999999999999999999999999999999966433 2333
Q ss_pred HHHHHHHHH
Q 046116 532 PYYAAVMIN 540 (604)
Q Consensus 532 ~~~l~rlik 540 (604)
...+..++.
T Consensus 80 ~~~l~~~l~ 88 (100)
T 3ma5_A 80 LSELQDAKL 88 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=6.8e-09 Score=98.39 Aligned_cols=104 Identities=16% Similarity=0.015 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL--------CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel--------~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
+..+..+...|..++..|+|++|+..|.+++++ .|. ...++.++|.+|..+|++++|+..+++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-----VAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999998 355 7899999999999999999999999999999
Q ss_pred --------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 483 --------SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 483 --------dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+|. ...+++.+|.++..+|++++|+..|+++++..+.
T Consensus 157 ~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 157 YATRLGPDDPN---VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHSCTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 677 8899999999999999999999999999998554
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=1e-08 Score=88.44 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS--- 487 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~--- 487 (604)
..+..+...|..++..|+|++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.+...
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 45788999999999999999999999999998664 11223457899999999999999999999999999865511
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
....+++.+|.++..+|++++|+..++++++....
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 12678999999999999999999999999998554
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.4e-09 Score=99.06 Aligned_cols=94 Identities=10% Similarity=-0.006 Sum_probs=83.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQA 499 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a 499 (604)
.++.++..|+|++|+..|.++++.+|. ++.++.++|.+|...|++++|+..++++++++|+ +..+++.+|.+
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~ 87 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATV 87 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence 345567889999999999999999999 8999999999999999999999999999999999 99999999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHhchh
Q 046116 500 -YDMMGLA--KESLMDALTFIGSRM 521 (604)
Q Consensus 500 -~~~LGd~--dEAL~d~~kALkl~~ 521 (604)
+...|++ ++|+..|+++++..|
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCC
Confidence 8899999 999999999999943
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.3e-08 Score=102.42 Aligned_cols=108 Identities=13% Similarity=-0.009 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--- 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--- 488 (604)
.+..+.+.|..+.. |+|++|+..|.+|+++.|.. .....+.++.|+|.+|..+|+|++|+..+++++++.|+...
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 57788999999988 99999999999999998751 11224789999999999999999999999999999776211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
...+++.+|.++..+|++++|+..|++++ ..|.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 14588999999999999999999999999 8553
No 112
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=3.1e-08 Score=85.43 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---SS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---~~ 488 (604)
.+..+...|..++..|+|++|+..|.+++++.+. ......+.++.++|.++..+|++++|+..+++++++.+.. ..
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 4678899999999999999999999999998654 1223347789999999999999999999999999885431 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
...+++.+|.++..+|++++|+..+++++++..
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999843
No 113
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.3e-08 Score=87.65 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------CCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS------KTM 486 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd------Pd~ 486 (604)
.+..+...|..+++.|+|++|+..|+++++++|+ ++.++.++|.+|..+|++++|+.+++++++++ |+
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~- 110 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-----FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS- 110 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh-
Confidence 4688999999999999999999999999999999 89999999999999999999999999999999 88
Q ss_pred CCCHHHHHHHHHHHHHc
Q 046116 487 SSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~L 503 (604)
+..++..++.+...+
T Consensus 111 --~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 111 --AREIDQLYYKASQQR 125 (126)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhh
Confidence 888888888776654
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.87 E-value=3e-09 Score=115.33 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+.+.|..+++.|+|++|+..|++|++++|. ++.++.++|.+|..+|++++|+..+++|++++|+ +..+
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~ 110 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA 110 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 4788999999999999999999999999999999 8999999999999999999999999999999999 8889
Q ss_pred HHHHHHH--HHHcCCHHHHHHHHH-----------HHHhchhhcC
Q 046116 493 LWRRSQA--YDMMGLAKESLMDAL-----------TFIGSRMKCK 524 (604)
Q Consensus 493 ~~rrG~a--~~~LGd~dEAL~d~~-----------kALkl~~~~~ 524 (604)
+..++.+ +..+|++++|+..++ ++++..+...
T Consensus 111 ~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 111 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 9999988 899999999999999 7777755544
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=3.8e-09 Score=95.92 Aligned_cols=93 Identities=11% Similarity=-0.062 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 435 KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 435 e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
..|.+++.++|+ ++..++++|.+++..|+|++|+..+++++.++|+ +..+++.+|.++..+|++++|+..|+
T Consensus 8 ~~~~~al~~~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEISSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 468899999999 8999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHhchhhcCCCCCCCHHHHHHHHHH
Q 046116 515 TFIGSRMKCKHTNRVKIPYYAAVMIN 540 (604)
Q Consensus 515 kALkl~~~~~d~~~~~i~~~l~rlik 540 (604)
+++++. |.+......+.....
T Consensus 80 ~al~l~-----p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 80 YGAVMD-----IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHS-----TTCTHHHHHHHHHHH
T ss_pred HHHhcC-----CCCchHHHHHHHHHH
Confidence 999994 444445444444433
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.86 E-value=7e-08 Score=103.24 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cccch-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK-MRKER-IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~-~~~~~-a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+..+...|..+++.|++++|++.|+++++..|.. ..+.. +.+|.+++.+|.+.|++++|+..++++++++|+ +.
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~ 550 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN---DA 550 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---CH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---Ch
Confidence 45678899999999999999999999999983310 00113 789999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+|+.+|.+|...|++++|+..|++++++.|
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999944
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.86 E-value=9.5e-09 Score=93.00 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+...|..++..|+|++|+..|.++++++|. ++.+|.++|.+|..+|++++|+.+++++++++|+ +..
T Consensus 43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 114 (164)
T 3sz7_A 43 ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-----YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN---GGS 114 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS---SCC
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---chH
Confidence 35778999999999999999999999999999999 8999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHH
Q 046116 492 SLWRRSQAYD 501 (604)
Q Consensus 492 A~~rrG~a~~ 501 (604)
++++++.+..
T Consensus 115 ~~~~~~l~~~ 124 (164)
T 3sz7_A 115 DAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776544
No 118
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.86 E-value=1.2e-08 Score=109.56 Aligned_cols=100 Identities=14% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
..+..+.+.|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|+ +..
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~---~~~ 386 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---NKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Confidence 35778999999999999999999999999999999 8999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMD-ALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d-~~kALkl 519 (604)
++..++.++..+|++++|... |++.+..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988764 4444433
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=6.8e-08 Score=92.42 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=81.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccch------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKER------------IVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~------------a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
+..+...|++++|+..|+++|+..|+...... .....++|.+|++.|+|.+|+..++++++..|+...
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred chhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 33334478999999999999999998321111 122367899999999999999999999999999211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
..++++++|.++..+|++++|+..++.+....|+..
T Consensus 183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 183 TRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 237899999999999999999999999888855443
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=9.8e-09 Score=86.99 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|++++|+..|.++++++|. .+.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~ 120 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS---CKEA 120 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---GTHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---chHH
Confidence 4678899999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCC
Q 046116 493 LWRRSQAYDMMGL 505 (604)
Q Consensus 493 ~~rrG~a~~~LGd 505 (604)
++.++.++..+|+
T Consensus 121 ~~~l~~~~~~~~~ 133 (133)
T 2lni_A 121 ADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998875
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=2e-08 Score=99.78 Aligned_cols=110 Identities=10% Similarity=0.081 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS--- 487 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~--- 487 (604)
.+..+...|..++..|+|++|+..|.+|++.... ......+.++.|+|.+|.++|+|++|+..+++|+++.+...
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 4668999999999999999999999999975221 12344678999999999999999999999999999876511
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~~ 522 (604)
..+.+|+.+|.++..+| ++++|+..|++|+.+...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 12789999999999999 579999999999998543
No 122
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.83 E-value=4.8e-08 Score=102.54 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=90.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+..+..+.+.|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--- 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--- 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence 44567889999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHH
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMD 512 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d 512 (604)
+..++..++.++..+++++++...
T Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 340 DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887653
No 123
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.83 E-value=2.3e-08 Score=96.55 Aligned_cols=107 Identities=16% Similarity=-0.013 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC-----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--- 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~-----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--- 482 (604)
+..+..+...|..++..|+|++|+..|.+++++. ++ ......++.++|.+|..+|++++|+..+++++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD--HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999985 22 2237889999999999999999999999999998
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 483 -----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 483 -----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+|. ...+++.+|.++..+|++++|+..|+++++..+.
T Consensus 186 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 186 KLGPDDPN---VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TSCTTCHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 666 7889999999999999999999999999987544
No 124
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.82 E-value=4.8e-08 Score=98.05 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS--- 487 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~--- 487 (604)
..+..+...|..++..|++++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.+...
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 35678999999999999999999999999998765 11223478999999999999999999999999999866510
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
....+++.+|.++..+|++++|+..|++++++....
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 027799999999999999999999999999996543
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.82 E-value=5.3e-08 Score=80.79 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|++++|+..|.++++..|. .+..+.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 113 (125)
T 1na0_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEA 113 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHH
Confidence 3567889999999999999999999999999999 7899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcC
Q 046116 493 LWRRSQAYDMMG 504 (604)
Q Consensus 493 ~~rrG~a~~~LG 504 (604)
+..+|.++..+|
T Consensus 114 ~~~l~~~~~~~g 125 (125)
T 1na0_A 114 KQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999988765
No 126
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3e-08 Score=103.12 Aligned_cols=106 Identities=11% Similarity=-0.091 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhcCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLM---LKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylk---Lgdy~eAI~D~~rALeLdPd~~~ 488 (604)
....+...|..++..|++++|+..|.++++..|.... ...+..+.++|.+|.. +|++++|+..++++++++|+
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--- 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--- 447 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc---
Confidence 3567888999999999999999999999999887100 0114489999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+++.+|.++..+|++++|+..|++++++.|
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999944
No 127
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.81 E-value=3.7e-08 Score=101.04 Aligned_cols=108 Identities=13% Similarity=-0.007 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCC
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-----LSKT 485 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-----LdPd 485 (604)
..+..+...|..++..|+|++|++.|.+|+++.+. ......+.++.|+|.+|..+|++++|+..+++|++ .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 46888999999999999999999999999998542 11234678999999999999999999999999999 7888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
...+++.+|.++..+|++++|+..++++++....
T Consensus 260 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 260 ---LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998554
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=3.1e-08 Score=98.36 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM--- 486 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~--- 486 (604)
.+..+...|..++..|+|++|+..|.+|+++ .|+ .....+.++.|+|.+|..+|+|++|+..+++|+++.++.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4778999999999999999999999999954 554 122234799999999999999999999999999886431
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhchh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKES-LMDALTFIGSRM 521 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEA-L~d~~kALkl~~ 521 (604)
.....+|+++|.+|..+|++++| ...|++|+.+..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 11278999999999999999999 777999998854
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=2e-08 Score=93.71 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
+..+.+.|..++..|+|++|+..|+++++++|. ++.++.++|.+|..+|+|++|+..++++++++|+ +..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 159 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHH
Confidence 577889999999999999999999999999999 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHhc
Q 046116 494 WRRSQAYDMMGLAKESL-MDALTFIGS 519 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL-~d~~kALkl 519 (604)
..++.++..+++..++. ..|...+..
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988887 445554443
No 130
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.80 E-value=3.8e-08 Score=94.94 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SKTM 486 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dPd~ 486 (604)
.+..+...|..++..|+|++|+..|+++++..|. .....+.++.++|.+|...|++++|+..+++++++ .|.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 81 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG- 81 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH-
Confidence 4567888999999999999999999999999998 22233688999999999999999999999999988 445
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
...+++.+|.++..+|++++|+..++++++..+..
T Consensus 82 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 82 --EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999996653
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=1.3e-08 Score=90.44 Aligned_cols=84 Identities=18% Similarity=0.076 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+..+..+...|..++..|+|++|+..|++++.++|+ ++.++.++|.+|..+|++++|+..++++++++|+ +
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~ 119 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-----EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA---Q 119 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---C
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Confidence 3345778999999999999999999999999999999 8999999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHH
Q 046116 490 SKSLWRRSQAYD 501 (604)
Q Consensus 490 ~KA~~rrG~a~~ 501 (604)
+.....+..+..
T Consensus 120 ~~~~~~~~~~~~ 131 (142)
T 2xcb_A 120 PAHEALAARAGA 131 (142)
T ss_dssp GGGHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 554444444433
No 132
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=3.3e-08 Score=90.85 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCC
Q 046116 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--SKSLWRRSQAYDMMGL 505 (604)
Q Consensus 428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~KA~~rrG~a~~~LGd 505 (604)
++..+|+..|.++++.+|+ ++.++.++|.++..+|++++|+..++++++++|+ + ..+++.+|.++..+|+
T Consensus 88 ~~~~~a~~~~~~al~~~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-----NFELACELAVQYNQVGRDEEALELLWNILKVNLG---AQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---TTTTHHHHHHHHHHHHHCS
T ss_pred cccchHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---cChHHHHHHHHHHHHHhCC
Confidence 3445689999999999999 8999999999999999999999999999999998 5 5699999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 046116 506 AKESLMDALTFIGS 519 (604)
Q Consensus 506 ~dEAL~d~~kALkl 519 (604)
+++|+..|+++|..
T Consensus 160 ~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 160 GNAIASKYRRQLYS 173 (176)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999999864
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=5.5e-08 Score=101.11 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL----KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---- 485 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~----~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---- 485 (604)
+..+...|..++.+|+|++|++.|++|+++.+. ......+..|.|+|.+|..+|++++|+.++++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 566778888999999999999999999887221 111226788889999999999999999999988887432
Q ss_pred -CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhchh
Q 046116 486 -MSSHSKSLWRRSQAYDMMG--LAKESLMDALTFIGSRM 521 (604)
Q Consensus 486 -~~~n~KA~~rrG~a~~~LG--d~dEAL~d~~kALkl~~ 521 (604)
....+.++..+|.++..+| +|++|+..|++++++.|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 1126778888888877765 58899999999988844
No 134
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.79 E-value=2.9e-08 Score=85.29 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..++..|+|++|+..|.++++++|+ ++.++.++|.+|..+|++++|+..++++++++|+ +.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~ 95 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD---DE 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cH
Confidence 456889999999999999999999999999999999 8999999999999999999999999999999999 76
Q ss_pred HHH
Q 046116 491 KSL 493 (604)
Q Consensus 491 KA~ 493 (604)
...
T Consensus 96 ~~~ 98 (117)
T 3k9i_A 96 TIQ 98 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.79 E-value=9.3e-08 Score=102.27 Aligned_cols=102 Identities=11% Similarity=-0.126 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..+.+.|++++|++.|+++++..|. +...+.+++.+|.+.|++++|+..++++++++|+ +..+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 477 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLL 477 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHH
Confidence 4668889999999999999999999999999998 7899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
|+.+|.++...|++++|+..|+++++..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999998664
No 136
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.78 E-value=8.9e-08 Score=96.49 Aligned_cols=99 Identities=10% Similarity=-0.143 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH----HHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC----YLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~----ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
....+...|..+.+.|++++|+..|.++++.+|+ .. ..+.+.+ +...|++++|+..++++++.+|+
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-----~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--- 198 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDED-----AT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--- 198 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-----cH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---
Confidence 4678889999999999999999999999999998 43 2333333 33458999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.+++.+|.++..+|++++|+..|+++++..|
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999944
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=1.9e-08 Score=88.75 Aligned_cols=70 Identities=10% Similarity=-0.013 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
+.+..+.|+|.++++.|+|++|+..+++||+++|+ ++.+|+++|.+|..+|++++|+.+|++++++.|+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 46889999999999999999999999999999999 99999999999999999999999999999997653
No 138
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=2.4e-08 Score=99.99 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--H
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--S 490 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~ 490 (604)
........+..+...+++++|+..|.++++.+|+ ++.++.++|.+|...|++++|+..+.++++++|+ + .
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~---~~~~ 255 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-----DAALATQLALQLHQVGRNEEALELLFGHLRXDLT---AADG 255 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---GGGG
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---cccc
Confidence 3455667777888899999999999999999999 9999999999999999999999999999999999 8 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.++.+++.++..+|+.++|+..|++++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.76 E-value=3.8e-08 Score=100.21 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SK 484 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dP 484 (604)
+..+..+...|..++..|+|++|+..|++++++.|. .....+.++.++|.+|..+|++++|+..+++++++ +|
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 456788899999999999999999999999999998 22223478999999999999999999999999998 56
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
. ...+++.+|.+|..+|++++|+..|+++++.....
T Consensus 124 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 124 G---EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 6 88999999999999999999999999999985543
No 140
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.75 E-value=9.5e-08 Score=92.10 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---C
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---S 487 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---~ 487 (604)
..+..+...|..++..|++++|+..|.+++++.|. ......+.++.++|.+|..+|++++|+..+++++++.|.. .
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 35678899999999999999999999999998765 1122347899999999999999999999999999987651 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+++.+|.++..+|++++|+..|++++++.+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1256899999999999999999999999999843
No 141
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.74 E-value=3.9e-08 Score=100.62 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM--RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS- 487 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~--~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~- 487 (604)
...+..+...|..++..|++++|+..|.+|+++.+... ....+.++.++|.+|..+|+|++|+..+++|+++.|...
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 44688999999999999999999999999999966521 334678999999999999999999999999999866511
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 488 --SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 488 --~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
....+++++|.+|..+|++++|+..|++++++....
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 123689999999999999999999999999975543
No 142
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=1.8e-08 Score=85.15 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
+..+..+...|..++..|+|++|+..|+++++++|+ ++.+|.++|.+|..+|++++|+..+++++++.|.. .+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-~~~ 77 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-----YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-GTQ 77 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SCH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC-Cch
Confidence 345778999999999999999999999999999999 89999999999999999999999999999998751 134
Q ss_pred HHHHHHHHHHHH
Q 046116 491 KSLWRRSQAYDM 502 (604)
Q Consensus 491 KA~~rrG~a~~~ 502 (604)
.+...+...+..
T Consensus 78 ~~~~~l~~~l~~ 89 (100)
T 3ma5_A 78 KDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.73 E-value=5.1e-08 Score=97.84 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc------CCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL------SKTM 486 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL------dPd~ 486 (604)
.+..+...|..++..|+|++|+..|++++++.|. .....+.++.++|.+|..+|++++|+..+++++.+ .|.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG- 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-
Confidence 4667889999999999999999999999999998 22233678999999999999999999999999988 344
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
...+++.+|.++..+|++++|+..|+++++..+...
T Consensus 86 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 121 (406)
T 3sf4_A 86 --EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121 (406)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999976543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=5e-08 Score=89.12 Aligned_cols=109 Identities=8% Similarity=-0.121 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---CCCCC-
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL---SKTMS- 487 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL---dPd~~- 487 (604)
.+..+...|..++..|+|++|+..|.+++++... ......+.++.++|.+|..+|++++|+..+.+++++ .++..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4677888888888888888888888888885322 112336778888888888888888888888888887 33200
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+++.+|.++..+|++++|+..++++++...
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1456788888888888888888888888888744
No 145
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=3.8e-08 Score=98.94 Aligned_cols=111 Identities=10% Similarity=-0.088 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM-RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS-- 488 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~-~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~-- 488 (604)
..+..+.+.|+.+...|+|++|+..|.+|+++.+... ....+.++.|+|.+|.. |++++|+..+++|+++.|....
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 4578899999999999999999999999999965411 12246889999999999 9999999999999999876110
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 489 -HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 489 -n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
...++.++|.+|..+|+|++|+..|++++++.++.
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 26789999999999999999999999999996653
No 146
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.69 E-value=1.2e-07 Score=96.60 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHH
Q 046116 412 LSVFMLKQQGNQEFWAGY-----------------IEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAI 473 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~Gd-----------------yeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI 473 (604)
..+..+...|..++..|+ |++|+..|.+++++.+. ......+.++.++|.+|..+|++++|+
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 456667777777777777 77777777777776422 011225567777777777777777777
Q ss_pred HHHHHHHhcCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 474 SDTTRALSLSKTMS---SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 474 ~D~~rALeLdPd~~---~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+++++++.|... ....+++.+|.++..+|++++|+..|+++++..+.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77777777765410 01236777777777777777777777777777553
No 147
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.69 E-value=1.2e-07 Score=104.14 Aligned_cols=131 Identities=13% Similarity=-0.046 Sum_probs=102.3
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 403 SDEEMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 403 s~edlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
+.+.+.+....+....+.+..+..+|+|++|+..|.++|++.-. ..+...+..+.|+|.+|..+|+|++|+..+.++
T Consensus 298 s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33445555566777778888888999999999999999997322 124447889999999999999999999999999
Q ss_pred Hhc-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHH
Q 046116 480 LSL-----SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPY 533 (604)
Q Consensus 480 LeL-----dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~ 533 (604)
|++ -|+.+.-..++.++|.+|..+|+|++|+..|++|+++....-.+..+.+..
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 976 344111567899999999999999999999999999865544334433433
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.9e-07 Score=76.89 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|+|++|+..|.++++..|. .+.++.++|.++..+|++++|+..++++++++|+ +..+
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ 108 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---NPQL 108 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHH
Confidence 3668899999999999999999999999999999 8999999999999999999999999999999999 9999
Q ss_pred HHHHHHHH
Q 046116 493 LWRRSQAY 500 (604)
Q Consensus 493 ~~rrG~a~ 500 (604)
+..++.+.
T Consensus 109 ~~~l~~~~ 116 (118)
T 1elw_A 109 KEGLQNME 116 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99888765
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=2.3e-08 Score=100.01 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+..+.+.|..+++.|+|++|+..|++|++++|+ ++.+++++|.+|..+|++++|+.+++++++++|+
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4678999999999999999999999999999999 8999999999999999999999999999999997
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=9e-08 Score=95.89 Aligned_cols=104 Identities=7% Similarity=-0.120 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIV-LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~-l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
.+.....+...|..+...|++++|+..|+++|++.|. ++. +|.+.+.++...|++++|+..+++|++++|.
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--- 166 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--- 166 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC---
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---
Confidence 3444555666666666666666666666666666665 443 6666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDM-MGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~-LGd~dEAL~d~~kALkl~~ 521 (604)
+..+|...+...+. +|++++|+..|+++++.+|
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p 200 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 200 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555544444332 5666666666666666644
No 151
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.6e-07 Score=77.75 Aligned_cols=68 Identities=4% Similarity=-0.035 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+..+.++|.+++..|+|++|+..++++++++|+ +..+++.+|.++..+|++++|+..|++++++.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999999999999999999 9999999999999999999999999999999543
No 152
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.66 E-value=2.2e-08 Score=103.26 Aligned_cols=100 Identities=9% Similarity=-0.094 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
..+.+.|..+++.|+|++|+..|+++|+++|. ++.+|+++|.+|..+|+|++|+.+++++++++|+ +..++.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~ 302 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRR 302 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 47889999999999999999999999999999 8999999999999999999999999999999999 999999
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHhchhh
Q 046116 495 RRSQA-YDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 495 rrG~a-~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.++.+ ....+..+++...|.++++..|+
T Consensus 303 ~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 303 ELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99998 44556778888999999988554
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=4e-07 Score=90.38 Aligned_cols=110 Identities=12% Similarity=-0.032 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hcCCCCC-
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLMLKKPEAAISDTTRAL---SLSKTMS- 487 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL---eLdPd~~- 487 (604)
.+......|..+...|+|++|+..|.+|+++.+.... ...+.++.++|.+|..+|+|++|+..+++|+ +..|+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 4455667889999999999999999999998765211 1236799999999999999999999999999 4455510
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
....+++++|.+|..+|+|++|+..|+++++...+
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 01269999999999999999999999999999654
No 154
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.63 E-value=2.7e-07 Score=73.84 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+..+.++|.++...|++++|+..++++++++|+ +..+++.+|.++..+|++++|+..|+++++..|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6789999999999999999999999999999999 999999999999999999999999999999943
No 155
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.62 E-value=1.1e-07 Score=98.72 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-------------------CCcHHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-------------------KKPEAA 472 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-------------------gdy~eA 472 (604)
.....+...|..+...|++++|+..|.+|++..|+ ++.++.++|.+|... +.+++|
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 35677889999999999999999999999999999 899999999998653 347889
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 473 ISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 473 I~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
+..++++++++|+ +..+++.+|.++..+|++++|+..|+++++..
T Consensus 320 ~~~~~~a~~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 320 VAHLKKADEANDN---LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHCTT---TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCc---hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 9999999999999 99999999999999999999999999999883
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.61 E-value=7.6e-08 Score=91.16 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCcccchHHHH----HHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-------CPLKMRKERIVLY----SNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-------~P~~~~~~~a~l~----~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
..+..|.++|..+.+.|+|++|+..|++||++ +|+ ++.+| +|+|.++..+|++++|+.+|++|+
T Consensus 55 ~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 35669999999999999999999999999999 999 99999 999999999999999999999999
Q ss_pred hcCCC
Q 046116 481 SLSKT 485 (604)
Q Consensus 481 eLdPd 485 (604)
+++|+
T Consensus 130 el~p~ 134 (159)
T 2hr2_A 130 EMIEE 134 (159)
T ss_dssp HHHHH
T ss_pred hcCCC
Confidence 99998
No 157
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.60 E-value=4.4e-07 Score=88.00 Aligned_cols=97 Identities=13% Similarity=-0.035 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 046116 411 ELSVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSL 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeL 482 (604)
+..+..+...|..++. .+++++|+..|.+|++.. ++.++.++|.+|.. .+++++|+..+++++++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 4456778889999999 999999999999999884 47889999999999 99999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 483 SKTMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 483 dPd~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+ ++.+++.+|.+|.. .|++++|+..|+++++.
T Consensus 108 --~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 108 --K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp --T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred --C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 4 67899999999999 99999999999999987
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=2.8e-07 Score=91.46 Aligned_cols=111 Identities=12% Similarity=-0.021 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC----CCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSK----TMSS 488 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdP----d~~~ 488 (604)
+..+...|..++..|+|++|+..|.+|+++.+.... .....++.++|.+|..+|+|++|+..+++|+++-. +...
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 456667899999999999999999999997654211 12356899999999999999999999999995321 1011
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
...+++++|.+|..+|+|++|+..+++++++.++..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999976543
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=2.3e-07 Score=103.16 Aligned_cols=123 Identities=10% Similarity=-0.013 Sum_probs=107.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC--CcHHHH
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGY----------IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK--KPEAAI 473 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~Gd----------yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg--dy~eAI 473 (604)
.++..++....|..+|..+...|+ |++|++.|+++|+.+|. +..+|++|+.++.+++ +|++|+
T Consensus 55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-----~y~aW~hR~w~l~~l~~~~~~~el 129 (567)
T 1dce_A 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWAREL 129 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcccccHHHHH
Confidence 345566778899999999999888 99999999999999999 9999999999999999 669999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 474 SDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
.++++++++||. |..||..|+.++..+| .++++++.+.++++.+ +.+.+.=.....++.+
T Consensus 130 ~~~~k~l~~d~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-----p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 130 ELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-----FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----CCCccHHHHHHHHHHh
Confidence 999999999999 9999999999999999 9999999999999993 4444444444444433
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=3.9e-07 Score=83.16 Aligned_cols=111 Identities=14% Similarity=-0.011 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
...+..+...|..+...|+|++|+..|.+++++ .|+ .....+.++.++|.+|..+|++++|+..+++++++.+...
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999998 332 1113678899999999999999999999999998753310
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 488 ---SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 488 ---~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
....++..+|.++..+|++++|+..+++++++...
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 12456789999999999999999999999998554
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.9e-07 Score=79.46 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
....+...|..++..|+|++|+..|.++++++|. ++.++.++|.+|..+|++++|+..++++++++|+ +..+
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 135 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK---NKVF 135 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS---CHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHH
Confidence 3778999999999999999999999999999999 8999999999999999999999999999999999 9888
Q ss_pred HHHHHHHHH
Q 046116 493 LWRRSQAYD 501 (604)
Q Consensus 493 ~~rrG~a~~ 501 (604)
+..++.+..
T Consensus 136 ~~~l~~~~~ 144 (148)
T 2dba_A 136 QEALRNISG 144 (148)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 887777653
No 162
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.58 E-value=2.8e-07 Score=99.72 Aligned_cols=111 Identities=5% Similarity=-0.101 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----CCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-----SKT 485 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-----dPd 485 (604)
+....+.+......|+|++|+..|.++|++.-. ..+...+..+.|+|.+|..+|+|++|+..++++|++ -|+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444455555679999999999999997321 124447889999999999999999999999999976 233
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcC
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCK 524 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~ 524 (604)
.+.-...++++|.+|..+|+|++|+..|++|+++....-
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 111567899999999999999999999999999855443
No 163
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.58 E-value=2.3e-07 Score=92.93 Aligned_cols=101 Identities=12% Similarity=-0.038 Sum_probs=90.9
Q ss_pred HHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCC
Q 046116 411 ELSVF-MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 411 ~~~A~-~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd~~~ 488 (604)
+.... .+...|+.+.+.|++++|+..|.+|++..|. ...+|...+..... +|++++|+..++++++++|+
T Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--- 201 (308)
T 2ond_A 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--- 201 (308)
T ss_dssp SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---
T ss_pred ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 33344 7999999999999999999999999999998 67777766666443 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..++..+|..+..+|++++|+..|+++++.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999996
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.58 E-value=7.2e-08 Score=91.25 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=66.5
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC----------
Q 046116 408 KENELSVFMLKQQGNQEFWAGYI----------EEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---------- 467 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~Gdy----------eeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---------- 467 (604)
+..+..++.+.+.|+.+...+++ ++||..|.+||+++|+ .+.+|+|+|.+|..+|
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-----~~~A~~~LG~ay~~lg~l~P~~~~a~ 104 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----KDEAVWCIGNAYTSFAFLTPDETEAK 104 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHhcccCcchhhhh
Confidence 34445788999999999988875 5999999999999999 9999999999999985
Q ss_pred -CcHHHHHHHHHHHhcCCC
Q 046116 468 -KPEAAISDTTRALSLSKT 485 (604)
Q Consensus 468 -dy~eAI~D~~rALeLdPd 485 (604)
+|++|+..+++|++++|+
T Consensus 105 g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.56 E-value=1.7e-07 Score=79.70 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKS 492 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA 492 (604)
.+..+...|..++..|+|++|+..|.++++++|. .+..+.++|.+|..+|++++|+..++++++++|.. .+..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 91 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-----YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR-GDQQV 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ccHHH
Confidence 4678899999999999999999999999999999 89999999999999999999999999999999861 03444
Q ss_pred HHHHHHHHHHc
Q 046116 493 LWRRSQAYDMM 503 (604)
Q Consensus 493 ~~rrG~a~~~L 503 (604)
...+...+..+
T Consensus 92 ~~~l~~~l~~l 102 (115)
T 2kat_A 92 VKELQVFLRRL 102 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444333
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.56 E-value=2.2e-07 Score=95.28 Aligned_cols=112 Identities=14% Similarity=0.028 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM--RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-- 486 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~--~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-- 486 (604)
+..+..+...|..++..|++++|+..|.+|+++.+... ....+.++.++|.+|..+|+|++|+..+.+|+++.+..
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 217 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788999999999999999999999999999866521 22467899999999999999999999999999975421
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 487 -SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 487 -~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.....+++++|.+|..+|++++|+..|+++++....
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 114578999999999999999999999999996543
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=3.4e-07 Score=94.67 Aligned_cols=112 Identities=11% Similarity=-0.045 Sum_probs=100.6
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH----HHc---CCcHHHH
Q 046116 403 SDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCY----LML---KKPEAAI 473 (604)
Q Consensus 403 s~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~y----lkL---gdy~eAI 473 (604)
+...+..+++....|..+|..+...| ++++|+..++++|..+|. +..+|++|+.+. ..+ +++++++
T Consensus 56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----NYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----CCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----cHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 34455666778889999999999999 999999999999999999 899999999999 777 8899999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhchhh
Q 046116 474 SDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAK--ESLMDALTFIGSRMK 522 (604)
Q Consensus 474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~d--EAL~d~~kALkl~~~ 522 (604)
..++++++.+|. |..+|+.|+.++..+|.++ +++..+.++++.++.
T Consensus 131 ~~~~~~l~~~pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 131 DILEAMLSSDPK---NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 999999999999 9999999999999999998 999999999998543
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=8.5e-07 Score=75.52 Aligned_cols=86 Identities=7% Similarity=-0.079 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...+...|..++..|+|++|+..|.++++..|+ ....+.++.++|.+|..+|++++|+..++++++..|+ +..+.
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~ 113 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG---SDAAR 113 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---SHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ChHHH
Confidence 467889999999999999999999999999998 1112889999999999999999999999999999999 87776
Q ss_pred HHHHHHHHHcC
Q 046116 494 WRRSQAYDMMG 504 (604)
Q Consensus 494 ~rrG~a~~~LG 504 (604)
.-+..+....+
T Consensus 114 ~a~~~l~~l~~ 124 (129)
T 2xev_A 114 VAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 65555544433
No 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=3.8e-07 Score=101.44 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=109.9
Q ss_pred cChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHH
Q 046116 402 MSDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTR 478 (604)
Q Consensus 402 ms~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~r 478 (604)
.....++..++....|..+|..+.+.+ +|++|++.|+++|+++|. +..+|++|+.+..++| .++++++++++
T Consensus 95 ~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-----N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 95 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-----cccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 333445666778899999999999999 779999999999999999 9999999999999999 99999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHH
Q 046116 479 ALSLSKTMSSHSKSLWRRSQAYDMM--------------GLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINK 541 (604)
Q Consensus 479 ALeLdPd~~~n~KA~~rrG~a~~~L--------------Gd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikK 541 (604)
+|+++|. +..||+.|+.++..+ +.+++|++.+.+|++.. |.+.+.=.+..-++.+
T Consensus 170 ~I~~~p~---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-----P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 170 LITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----PNDQSAWFYHRWLLGR 238 (567)
T ss_dssp TTTTTCC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-----SSCSHHHHHHHHHHSC
T ss_pred HHHHCCC---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-----CCCccHHHHHHHHHhc
Confidence 9999999 999999999999996 66899999999999994 4455555555554443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=1.3e-07 Score=82.75 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
..+..+..+...|..++..|++++|+..|.+|++++|+ ++.++.++|.+|..+|++++|+..++++++++|+
T Consensus 46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 46 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34446789999999999999999999999999999999 8999999999999999999999999999999998
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=6.7e-07 Score=76.96 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+..+.++|.+++..|+|++|+..++++++++|+ +..+++.+|.++..+|++++|+..|+++++..|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 7999999999999999999999999999999999 999999999999999999999999999999944
No 172
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=9.2e-07 Score=91.45 Aligned_cols=124 Identities=10% Similarity=-0.105 Sum_probs=107.7
Q ss_pred HHhHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH--HHHHHHHH
Q 046116 408 KENELSVFMLKQQGNQE----FWA---GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE--AAISDTTR 478 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~l----fk~---GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~--eAI~D~~r 478 (604)
...++....|..++..+ ... +++++++..++++|+.+|. +..+|++|+.+..++++++ ++++.+++
T Consensus 97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-----ny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-----NHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 34455677888888888 666 7999999999999999999 9999999999999999999 99999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 479 ALSLSKTMSSHSKSLWRRSQAYDMMGL------AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 479 ALeLdPd~~~n~KA~~rrG~a~~~LGd------~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
+++.||. |..||..|+.++..+|. ++++++.+.++++. +|.+.+.=.+...++.+..+
T Consensus 172 ~i~~d~~---N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 172 VIDTDLK---NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCC---CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCC
Confidence 9999999 99999999999999998 99999999999999 45555666666666665554
No 173
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.48 E-value=7.8e-07 Score=73.12 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 456 YSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK-SLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 456 ~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K-A~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
..++|.+++..|+|++|+..++++++++|+ +.. +++.+|.++..+|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999 999 999999999999999999999999999944
No 174
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=2.7e-06 Score=82.39 Aligned_cols=95 Identities=19% Similarity=0.049 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116 413 SVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP 484 (604)
.+..+...|..++. .+++++|+..|++|++.. ++.++.++|.+|.. .+++++|+..+++|++++
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 56778899999999 999999999999999973 57999999999999 999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 485 TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+..+++.+|.+|.. .+++++|+..|+++++.
T Consensus 145 ----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 145 ----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 45899999999999 99999999999999987
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=4.3e-07 Score=74.17 Aligned_cols=67 Identities=13% Similarity=-0.050 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++..+.++|.++...|++++|+..++++++++|+ +..+++.+|.++..+|++++|+..|+++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 7888999999999999999999999999999999 999999999999999999999999999999943
No 176
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.45 E-value=3.8e-06 Score=84.97 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC--
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKM---RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS-- 487 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~---~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~-- 487 (604)
.+..+...|..++..|+|++|+..|.+++++.+... ......++.++|.+|..+|++++|+..+++++.+.|...
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 466788999999999999999999999999863210 123677889999999999999999999999999987621
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....+++.+|.++...|++++|+..+++++....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 1457899999999999999999999999998743
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.41 E-value=2.3e-06 Score=92.23 Aligned_cols=116 Identities=7% Similarity=-0.056 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-----C
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS-----K 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd-----P 484 (604)
.+.........+.++|+|++|+..|.+++++.-. ..+...+..+.|+|.+|..+|+|++|+..+.++|.+. |
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 3455666677788999999999999999987322 1244578899999999999999999999999999752 3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCC
Q 046116 485 TMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNR 528 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~ 528 (604)
+.+.-...++++|.+|..+|++++|+..|++|+++....-.++.
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 31115678999999999999999999999999998655433333
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=1.5e-06 Score=91.09 Aligned_cols=115 Identities=9% Similarity=-0.075 Sum_probs=103.3
Q ss_pred ccChHHHHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC-cHHHHHHHH
Q 046116 401 LMSDEEMKENELSVFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK-PEAAISDTT 477 (604)
Q Consensus 401 ~ms~edlee~~~~A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd-y~eAI~D~~ 477 (604)
.+....+...++....|..++..+...+ +++++++.++++|+.+|. +..+|++|+.+...+|. ++++++.++
T Consensus 95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-----Ny~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3334445566778899999999999998 499999999999999999 99999999999999999 599999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhchhhc
Q 046116 478 RALSLSKTMSSHSKSLWRRSQAYDMM--------------GLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 478 rALeLdPd~~~n~KA~~rrG~a~~~L--------------Gd~dEAL~d~~kALkl~~~~ 523 (604)
++|+.+|. |..||..|+.++..+ +.+++++..+.+++...|++
T Consensus 170 ~~I~~~p~---N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d 226 (331)
T 3dss_A 170 SLITRNFS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 226 (331)
T ss_dssp HHHHHCSC---CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHCCC---CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 99999999 999999999999998 56899999999999995543
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=7.6e-07 Score=74.53 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+..+...|..++..|+|++|+..|.+++++.|.. .....+.++.++|.+|..+|++++|+..++++++++|+ .
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~ 112 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT----P 112 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----H
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----H
Confidence 35678899999999999999999999999998861 00111889999999999999999999999999999886 6
Q ss_pred HHHHHHHHHHHHcC
Q 046116 491 KSLWRRSQAYDMMG 504 (604)
Q Consensus 491 KA~~rrG~a~~~LG 504 (604)
.....++.+...++
T Consensus 113 ~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 113 DVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777766544
No 180
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.40 E-value=2.9e-06 Score=72.78 Aligned_cols=81 Identities=10% Similarity=-0.021 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
+......|+.+|+.|+|..|+..|.+|++..+.. .....+.++.++|.||.++|+++.|+..+++|++++|+ +..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~---~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHH
Confidence 5677899999999999999999999999974321 12347899999999999999999999999999999999 988
Q ss_pred HHHHHH
Q 046116 492 SLWRRS 497 (604)
Q Consensus 492 A~~rrG 497 (604)
++.+++
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 877776
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=1.5e-06 Score=91.72 Aligned_cols=114 Identities=7% Similarity=-0.049 Sum_probs=104.0
Q ss_pred ccChHHHHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-C-CcHHHHHHHH
Q 046116 401 LMSDEEMKENELSVFMLKQQGNQEFWAG-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-K-KPEAAISDTT 477 (604)
Q Consensus 401 ~ms~edlee~~~~A~~lk~~GN~lfk~G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-g-dy~eAI~D~~ 477 (604)
..+...+..+++....|..+|..+...| .+++++..++++|..+|. +..+|++|+.++..+ + ++++++..++
T Consensus 75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-----ny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-----SYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3344456667778889999999999999 599999999999999999 999999999999998 8 9999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhchhh
Q 046116 478 RALSLSKTMSSHSKSLWRRSQAYDMMGLAK--------ESLMDALTFIGSRMK 522 (604)
Q Consensus 478 rALeLdPd~~~n~KA~~rrG~a~~~LGd~d--------EAL~d~~kALkl~~~ 522 (604)
++++++|. |..||+.|+.++..+|.++ +++..+.++++.++.
T Consensus 150 k~L~~dpk---Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 150 GSLLPDPK---NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHTSSCTT---CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 99999999 9999999999999999998 999999999998543
No 182
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.29 E-value=8e-06 Score=69.73 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKK---PEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgd---y~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
++.++..+|.+++..++ .++|...+++||++||+ ++.+++-+|..++..|+|++|+..++++++..|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 89999999999987766 79999999999999999 999999999999999999999999999999944
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=6.1e-06 Score=86.48 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=96.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC--cHHHHH
Q 046116 407 MKENELSVFMLKQQGNQEFWAGY----------IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK--PEAAIS 474 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~Gd----------yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd--y~eAI~ 474 (604)
+..+++....|..++..+...+. +++++..++++|..+|. +..+|++|+.+...+++ +++++.
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-----ny~aW~hR~wlL~~l~~~~~~~EL~ 131 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWARELE 131 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhccCcccHHHHHH
Confidence 34455677788888888876665 79999999999999999 99999999999999995 899999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhchh
Q 046116 475 DTTRALSLSKTMSSHSKSLWRRSQAYDMMGL-AKESLMDALTFIGSRM 521 (604)
Q Consensus 475 D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd-~dEAL~d~~kALkl~~ 521 (604)
.++++++++|. |..||..|+.++..+|. +++++..+.++++.+|
T Consensus 132 ~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 132 LCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 99999999999 99999999999999999 6999999999999843
No 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.23 E-value=9.1e-06 Score=82.14 Aligned_cols=110 Identities=13% Similarity=0.002 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---C
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS---H 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~---n 489 (604)
.+..+...|..++..|++++|+..+.+++...|.........++.++|.+|...|++++|+..+.+++.+.|.... .
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4567788899999999999999999999999886322334568899999999999999999999999998765211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
..+++.+|.++...|++++|+..|+++++....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999998654
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.22 E-value=8.3e-06 Score=77.69 Aligned_cols=100 Identities=9% Similarity=-0.155 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116 413 SVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP 484 (604)
.+..+.+.|..++. .+++++|+..|.+|++..|. ...+.+++++|.+|.. .+++++|+..+++|+++ |
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~---~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES---DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS---HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC---cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 36678889999988 88999999999999999883 0148999999999999 88999999999999998 6
Q ss_pred CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 046116 485 TMSSHSKSLWRRSQAYDMM-G-----LAKESLMDALTFIGS 519 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~L-G-----d~dEAL~d~~kALkl 519 (604)
. +..+++.+|.+|..- | ++++|+..|+++++.
T Consensus 160 ~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 160 R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6 678999999999865 3 899999999999988
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=2.9e-06 Score=89.55 Aligned_cols=125 Identities=10% Similarity=-0.100 Sum_probs=109.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH--------HHHHHH
Q 046116 407 MKENELSVFMLKQQGNQEFWA-G-YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE--------AAISDT 476 (604)
Q Consensus 407 lee~~~~A~~lk~~GN~lfk~-G-dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~--------eAI~D~ 476 (604)
+...++....|..++..+... + +++++++.++++|+.+|. +..+|++|+.+..+++.++ ++++.+
T Consensus 116 L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-----Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 116 AVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-----NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-----CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 445556788999999999887 7 999999999999999999 9999999999999999998 999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 477 TRALSLSKTMSSHSKSLWRRSQAYDMMGL-------AKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 477 ~rALeLdPd~~~n~KA~~rrG~a~~~LGd-------~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
+++|+.+|. |..||..|+.++..++. ++++++.+.++++.. |.+.+.=.++.-++.+...
T Consensus 191 ~k~I~~dp~---N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-----P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 191 NEMLRVDGR---NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-----PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHCTT---CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCC
Confidence 999999999 99999999999999997 799999999999994 4555555566666655443
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=6e-06 Score=90.62 Aligned_cols=110 Identities=9% Similarity=-0.068 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-- 482 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-- 482 (604)
+.+..+..+.+.|..+..+|+|++|+.+|.++|++. +. .++..+..++|+|.+|..+|+|++|+..+.+|+++
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999872 22 24558999999999999999999999999999975
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 483 ---SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 483 ---dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
-|+.+.-.+.+-.+++++..+|.|++|...|+++.+.
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4551113566778999999999999999999998765
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.17 E-value=6.4e-06 Score=88.55 Aligned_cols=101 Identities=8% Similarity=-0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERI-VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a-~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
....+...|..+.+.|++++|+..|.+++++.|. ++ .+|.+.+.++.+.|++++|+..+++|++..|. ...
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~---~~~ 391 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHH 391 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---CTH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---chH
Confidence 3444444455555555555555555555555444 32 34555555555555555555555555555444 444
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhchh
Q 046116 492 SLWRRSQA-YDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 492 A~~rrG~a-~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.++..+.. +...|++++|...|+++++.+|
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p 422 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYG 422 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence 44433333 2235555555555555555533
No 189
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.13 E-value=1.3e-05 Score=76.32 Aligned_cols=96 Identities=10% Similarity=-0.166 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 046116 413 SVFMLKQQGNQEFWAG----YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSK 484 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~G----dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdP 484 (604)
.+..+...|..+.. + ++++|+..|.+|++. . ++.+++++|.+|.. .+++++|+..+++|++..|
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 36778889999888 6 999999999999764 4 68999999999998 8999999999999999988
Q ss_pred --CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 485 --TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 485 --d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+ ++.+++.+|.+|.. .+++++|+..|+++++.
T Consensus 121 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 121 SDA---AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp SHH---HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred Ccc---hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 4 58999999999999 89999999999999987
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.10 E-value=1.5e-05 Score=81.90 Aligned_cols=105 Identities=9% Similarity=-0.153 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CCCCC
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS--KTMSS 488 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd--Pd~~~ 488 (604)
+... .....|..+++.++|++|+..|++++...+. .....+++++|.++..+|++++|+..+++++.-. |. .
T Consensus 133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~--~ 206 (282)
T 4f3v_A 133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK---FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA--C 206 (282)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT--T
T ss_pred CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc--c
Confidence 3455 7899999999999999999999988775322 1124689999999999999999999999999654 33 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
...+++++|.++..+|+.++|...|++++...|
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 467999999999999999999999999999944
No 191
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=1.9e-05 Score=74.21 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-C-CCCCCHHHHHHHHHHHHHc
Q 046116 429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK---KPEAAISDTTRALSLS-K-TMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg---dy~eAI~D~~rALeLd-P-d~~~n~KA~~rrG~a~~~L 503 (604)
....+.+.|.+.+..+|. +....++.|.|+.+.+ ++.++|..++..++.+ | + +.+++|.+|.+++++
T Consensus 13 ~l~~~~~~y~~e~~~~~~-----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHc
Confidence 356678889999888887 8999999999999999 7779999999999999 7 5 789999999999999
Q ss_pred CCHHHHHHHHHHHHhchh
Q 046116 504 GLAKESLMDALTFIGSRM 521 (604)
Q Consensus 504 Gd~dEAL~d~~kALkl~~ 521 (604)
|+|++|+..++.+|+..|
T Consensus 85 ~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 999999999999999944
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.99 E-value=3.1e-05 Score=83.23 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=93.0
Q ss_pred HHHHhHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhcC
Q 046116 406 EMKENELS-VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-YLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 406 dlee~~~~-A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-ylkLgdy~eAI~D~~rALeLd 483 (604)
.++..+.. ...+...|+.+.+.|++++|+..|.+|++..|. ...++...+.. +...|++++|...++++++.+
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-----~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-----CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 33434444 468999999999999999999999999999887 56666665544 557999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 484 KTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
|+ ++.++...+..+..+|++++|...|++++...+
T Consensus 422 p~---~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 422 GD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred CC---CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99 999999999999999999999999999999843
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=7.1e-05 Score=67.08 Aligned_cols=88 Identities=11% Similarity=-0.134 Sum_probs=82.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTMSSHSKSLWR 495 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~~~n~KA~~r 495 (604)
.|..++..+.+++|++.|.+|.+. . ++...+++|.+|.. .+++++|+..+++|.+. . ++.++++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~a~~~ 98 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--N-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---DQDGCLI 98 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--C-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C---CHHHHHH
Confidence 888888889999999999999997 3 68999999999999 89999999999999987 5 7899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 496 RSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 496 rG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+|.+|.. .+++++|+..|+++.+.
T Consensus 99 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 99 LGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999 99999999999999998
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.93 E-value=1.2e-05 Score=82.54 Aligned_cols=96 Identities=13% Similarity=-0.040 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC--HHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH--SKS 492 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n--~KA 492 (604)
+.....+..+...|+|++|.+.|..++...|. .. .++++|.++++.++|++|+..++.++...++ . ..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~---~~~~~a 173 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSE-----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK---FLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---ccHHHH
Confidence 45566788899999999999999999999998 67 9999999999999999999999988876422 2 358
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
++.+|.++..+|++++|+..|++++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999865
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00011 Score=75.22 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---CCCCHHH
Q 046116 417 LKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---MSSHSKS 492 (604)
Q Consensus 417 lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~~~n~KA 492 (604)
....|..+...|++++|+..|++++...+. ......+.++.++|.+|...|+|.+|+..+.+++..-.. ......+
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 444566666778888888888888887443 112346889999999999999999999999999876322 1125789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+...|.+|..+|++++|...|++++...+.
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988554
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.83 E-value=0.00013 Score=77.79 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHH---------------------------------
Q 046116 414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYS--------------------------------- 457 (604)
Q Consensus 414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~--------------------------------- 457 (604)
+-.+.-+|..++..++ +.+|+.+|.+||+++|+ ++.+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5666677777776554 57899999999999998 333333
Q ss_pred -----------HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 458 -----------NRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 458 -----------NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
-.|..++..|++++|+..+++|+.++|+ .-+|.-+|.++...|++++|+..|.+|+.+.|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3444555679999999999999999975 67889999999999999999999999999944
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00017 Score=73.86 Aligned_cols=111 Identities=6% Similarity=-0.080 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC---
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS--- 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~--- 488 (604)
.+......|..++..|+|++|+..+.+++..... ..+...+.++.+.+.+|..+|+|++|...+++++.+.+....
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 4677889999999999999999999999987433 224457889999999999999999999999999987643110
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 489 -HSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 489 -n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
....+...|..+...|+|++|...|.++++.....
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 24567778999999999999999999999875543
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=5.1e-05 Score=64.68 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.++.+...|..++..++ .++|...+.+||.++|+ ++..+..+|..+++.|+|++|+..++++++.+|+ .++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 46788899999976665 79999999999999999 8999999999999999999999999999999998 444
Q ss_pred HH
Q 046116 490 SK 491 (604)
Q Consensus 490 ~K 491 (604)
..
T Consensus 79 ~~ 80 (93)
T 3bee_A 79 RV 80 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.69 E-value=0.0003 Score=74.72 Aligned_cols=95 Identities=16% Similarity=-0.046 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCC
Q 046116 414 VFMLKQQGNQEFWAG---YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 414 A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLdPd~ 486 (604)
+..+...|..++..| ++++|++.|++|++. . ++.+++++|.+|.. .+++++|+..+++|++. .
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~- 397 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--G- 397 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--C-
Confidence 456788899888866 899999999999987 3 57899999999999 89999999999999985 4
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhch
Q 046116 487 SSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGSR 520 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl~ 520 (604)
++.+++++|.+|.. .+++++|+..|+++++..
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 67899999999999 899999999999999995
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.65 E-value=0.00049 Score=73.08 Aligned_cols=96 Identities=11% Similarity=-0.205 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcC
Q 046116 412 LSVFMLKQQGNQEFW----AGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM----LKKPEAAISDTTRALSLS 483 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk----~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk----Lgdy~eAI~D~~rALeLd 483 (604)
..+..+...|..++. .+++++|+..|.+|++.. ++..+.++|.+|.. .+++++|+..+++|++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 144 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ- 144 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 466778889999998 899999999999998753 57888899999998 88999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 484 KTMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 484 Pd~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+ ++.+++.+|.+|.. .+++++|+..|+++++.
T Consensus 145 -~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 145 -G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp -T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5 78999999999998 88999999999999887
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.65 E-value=0.00035 Score=59.69 Aligned_cols=71 Identities=10% Similarity=-0.169 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT----MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd----~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+.-.+.+|..++..++|..|+..+..|++..++ +......+..+|.+++.+|++++|+..+++++++.|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 35667788999999999999999999999987422 122688899999999999999999999999999944
No 202
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.62 E-value=0.00017 Score=76.98 Aligned_cols=86 Identities=15% Similarity=-0.029 Sum_probs=50.2
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 418 KQQGNQEFWA----GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQC-Y--LMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 418 k~~GN~lfk~----GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~-y--lkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+.|..+... +++++|+..|.++. |. ++.+++++|.+ | ...+++++|+..+++|++. + ++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~ 283 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QP 283 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CH
Confidence 4455555443 45666666666655 44 55666666665 3 3556666666666666543 3 45
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 046116 491 KSLWRRSQAYDMMG-----LAKESLMDALTFI 517 (604)
Q Consensus 491 KA~~rrG~a~~~LG-----d~dEAL~d~~kAL 517 (604)
.+++.+|.+|. .| ++++|+..|+++.
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 66666666665 44 6666666666666
No 203
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.00026 Score=66.50 Aligned_cols=79 Identities=13% Similarity=-0.103 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 046116 413 SVFMLKQQGNQEFWAG---YIEEAVKKYSKALDLC-PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSS 488 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~G---dyeeAIe~YtkALel~-P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~ 488 (604)
..+...+.|..+.+.+ +++++|..+++.++.+ |. ....+++++|..|+++|+|++|...++++|+++|+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~----~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~--- 103 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ--- 103 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---
Confidence 4678889999999988 7889999999999998 73 16899999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 046116 489 HSKSLWRRSQ 498 (604)
Q Consensus 489 n~KA~~rrG~ 498 (604)
|..|..-+..
T Consensus 104 n~QA~~Lk~~ 113 (152)
T 1pc2_A 104 NNQAKELERL 113 (152)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888654433
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00039 Score=75.10 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC----PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~----P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
+.+..+..+.+.|..+..+|+|++|+.+|.++|++. +. .+...+..++|+|.+|..+|+|++|+..+++|+++
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999872 22 24558999999999999999999999999999976
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.00041 Score=74.61 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--
Q 046116 409 ENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL----CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL-- 482 (604)
Q Consensus 409 e~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel----~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL-- 482 (604)
+.+..+..+.+.|..+..+|+|++|+.+|.++|++ .|. .++..+..++|+|.+|..+|+|++|+..+++|+++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999986 232 35558999999999999999999999999999975
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHc
Q 046116 483 ---SKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 483 ---dPd~~~n~KA~~rrG~a~~~L 503 (604)
-|+.+.-.+.+..++.++..+
T Consensus 403 ~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 403 VTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHH
Confidence 455111234445566665543
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.31 E-value=0.00097 Score=68.99 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHH-
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLML-----KKPEAAISDTTRALSLSKTMSSH-SKSLWRRSQAYDM- 502 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkL-----gdy~eAI~D~~rALeLdPd~~~n-~KA~~rrG~a~~~- 502 (604)
...|.....+||+++|. -.+..+|.-+|..|.++ |+.++|...+++||+++|+ . ..+++..|..+..
T Consensus 179 l~~A~a~lerAleLDP~---~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~---~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS---YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA---HDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT---TCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHh
Confidence 57899999999999998 22466999999999996 9999999999999999997 5 8999999999988
Q ss_pred cCCHHHHHHHHHHHHhchhhc
Q 046116 503 MGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 503 LGd~dEAL~d~~kALkl~~~~ 523 (604)
+|++++|...+++++...+..
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGG
T ss_pred cCCHHHHHHHHHHHHcCCCCC
Confidence 599999999999999996653
No 207
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.31 E-value=0.0018 Score=79.03 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC----
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM---- 486 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~---- 486 (604)
......|.+.|..+.+.|+|++||..|.+| + ++..|.+.+.++.++|+|++|+..+..|.+.++++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----d-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt 1171 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 1171 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH
Confidence 345678889999999999999999999776 4 68899999999999999999999999988776441
Q ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 487 --------------------SSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 487 --------------------~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
..+...+++.|..++..|+|++|+..|..+
T Consensus 1172 ~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 114456778888888888888888888776
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.00077 Score=60.24 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----c
Q 046116 428 GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDM----M 503 (604)
Q Consensus 428 GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~----L 503 (604)
+++++|+..|.+|.+..+. .+. +|.+|...+.+++|+..+++|.+. . ++.+++++|.+|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-----~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-----FGC----LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-----THH----HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCCCH-----hhh----HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCC
Confidence 4789999999999998755 343 899999999999999999999997 5 78999999999999 9
Q ss_pred CCHHHHHHHHHHHHhc
Q 046116 504 GLAKESLMDALTFIGS 519 (604)
Q Consensus 504 Gd~dEAL~d~~kALkl 519 (604)
+++++|+..|+++.+.
T Consensus 75 ~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL 90 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcC
Confidence 9999999999999987
No 209
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.28 E-value=0.0036 Score=76.36 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---------
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT--------- 485 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd--------- 485 (604)
..+...|+.++..|+|++|+..|++| ..|..+|.||.++|+|++|++.+++|...++=
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 45678999999999999999999885 46888999999999999999999999544430
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 486 -------------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 486 -------------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
-..+++-+..++..|...|.|++|+..++.+|.+ ++....+-..+..+..|.+.
T Consensus 1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-----eraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----ChhHhHHHHHHHHHHHhCCH
Confidence 0014456677888899999999999999999999 34455666666666555433
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.27 E-value=0.0039 Score=66.34 Aligned_cols=93 Identities=13% Similarity=-0.027 Sum_probs=77.9
Q ss_pred HHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhcCC
Q 046116 413 SVFMLKQQGNQ-E--FWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-----KPEAAISDTTRALSLSK 484 (604)
Q Consensus 413 ~A~~lk~~GN~-l--fk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-----dy~eAI~D~~rALeLdP 484 (604)
.+..+.+.|.. + ...+++++|+..|.+|++.. ++.+++++|.+|. .| ++++|+..+++|. |
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence 45677888887 3 46789999999999998654 5788999999998 55 9999999999998 7
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 046116 485 TMSSHSKSLWRRSQAYDM----MGLAKESLMDALTFIGS 519 (604)
Q Consensus 485 d~~~n~KA~~rrG~a~~~----LGd~dEAL~d~~kALkl 519 (604)
+ ++.+++++|.+|.. ..++++|+..|+++.+.
T Consensus 316 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 316 R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 8 89999999988877 34899999999999876
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.25 E-value=0.0032 Score=65.44 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc---------
Q 046116 414 VFMLKQQGNQEFWAG--YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--------- 482 (604)
Q Consensus 414 A~~lk~~GN~lfk~G--dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--------- 482 (604)
......+|...+..| ++++|+..|+++.+..|+ -....++.| +++++|+|++|..+++.++++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~ 249 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPT---WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKEN 249 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 334445554455555 999999999999988885 002345555 999999999999999988887
Q ss_pred -CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 483 -SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 483 -dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+|+ ++.++.++..+.+.+|+ +|.+.+.++.+..|
T Consensus 250 ~~p~---~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 250 AVLY---KPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHSS---HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred CCCC---CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 588 99999999999999998 88889999998843
No 212
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.10 E-value=0.0016 Score=62.10 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-cccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---C-
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLK-MRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT---M- 486 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~-~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd---~- 486 (604)
-.+.++...++..|.|+.|+-.++.++.+. |+- .......++...|.+++..++|..|...|++||++... .
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457788899999999999999999988774 331 23346778899999999999999999999999865321 0
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046116 487 ------------------SSHSKSLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 487 ------------------~~n~KA~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
....+..|+.+.||..++++++|+..++
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 0012678999999999999999999844
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.09 E-value=0.0027 Score=57.84 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhcC-C-CCCCCHHHHHHHHHHHHHc
Q 046116 429 YIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEA---AISDTTRALSLS-K-TMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 429 dyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~e---AI~D~~rALeLd-P-d~~~n~KA~~rrG~a~~~L 503 (604)
....+...|.+++...+. ....-++.|.++.+..+..+ +|.-+...++-+ | . ..+.+|.+|..++++
T Consensus 16 ~l~~~~~~y~~e~~~~~~-----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~---~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSV-----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHHh
Confidence 345667778888887776 78999999999999988777 999999988877 5 4 678999999999999
Q ss_pred CCHHHHHHHHHHHHhchh
Q 046116 504 GLAKESLMDALTFIGSRM 521 (604)
Q Consensus 504 Gd~dEAL~d~~kALkl~~ 521 (604)
|+|++|+..++..|+..|
T Consensus 88 g~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 999999999999999944
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.00 E-value=0.00097 Score=72.60 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHH
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQM 543 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk 543 (604)
...+...|...|++++|+..++.++.+ ++...++-..+.-+..|-+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHhcC
Confidence 445668899999999999999999999 4455666666666555443
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.97 E-value=0.0039 Score=64.80 Aligned_cols=102 Identities=7% Similarity=-0.114 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCcccchHHHHHHHHHH--HHHcC--CcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCP---LKMRKERIVLYSNRAQC--YLMLK--KPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P---~~~~~~~a~l~~NRA~~--ylkLg--dy~eAI~D~~rALeLdPd 485 (604)
..+.....+..+.+.|+.+.|.+.+.+..+.+| +. +-.+..+++.+ .+..| ++.+|+..++++.+..|+
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~----~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG----DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc----chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 444444555555555666666666655555555 10 02333334433 44334 566666666665554443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+........ ++..+|++++|..+++..++..|+
T Consensus 211 ---~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 211 ---WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp ---HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ---cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence 222222222 666667777776666655555443
No 216
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.64 E-value=0.016 Score=54.75 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=74.9
Q ss_pred cchhhhhHHHHhhhcCC-CCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcC
Q 046116 60 EHVLVLSGLFNIAIKQP-DDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSG 138 (604)
Q Consensus 60 ~~~~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~ 138 (604)
-+.-++..|.+++-..| +-..+.+.|++.-...++ ++.+.-+=..|+.++|..+.+..+.....++.|
T Consensus 18 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 86 (252)
T 4hxt_A 18 TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-----------TSTDSEVQKEAARALANIASGPDEAIKAIVDAG 86 (252)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-----------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 34457777888877665 222344456666555554 334567778999999999999899999999999
Q ss_pred CcHHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116 139 VVLPLMELLRGKISWVEERVAVRALGHLASHD 170 (604)
Q Consensus 139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 170 (604)
+||+|+.+|+.. +.--++.|+++|++|+.+.
T Consensus 87 ~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~ 117 (252)
T 4hxt_A 87 GVEVLVKLLTST-DSEVQKEAARALANIASGP 117 (252)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 999999999964 4556889999999999643
No 217
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.63 E-value=0.017 Score=61.01 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CcccchHHHHHHHHHHHHHcCCcHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL-----------------KMRKERIVLYSNRAQCYLMLKKPEAAISD 475 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~-----------------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D 475 (604)
..+.+...|......|+.+.|++.+.+|+.+... ...+....+...++..++.+|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4556667777777889999999999999998421 01123445666788999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 476 TTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 476 ~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+.+++..+|- +-.+|..+-.+|+..|+..+|+..|+++-+...
T Consensus 194 l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 194 LEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999877643
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.22 E-value=0.016 Score=61.64 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+..+...+..++..|++++|+..+++|++++|+ ...|..+|.++...|++++|+..+.+|+.++|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5667778888888899999999999999999986 678888999999999999999999999999998
No 219
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.69 E-value=0.047 Score=59.27 Aligned_cols=103 Identities=15% Similarity=0.255 Sum_probs=75.5
Q ss_pred cchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhc
Q 046116 60 EHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKS 137 (604)
Q Consensus 60 ~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~ 137 (604)
.+.-++..+.++--..++.| ++.+.|++.-...++ .++.|--|-+.||.+++.......+....-|++
T Consensus 92 ~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL----------~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~ 161 (529)
T 3tpo_A 92 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 161 (529)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHH----------TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHH----------cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 33345666666543444433 456667665554443 345677788999999999998889999999999
Q ss_pred CCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116 138 GVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF 173 (604)
Q Consensus 138 ~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f 173 (604)
|+||+|+.||...-.=| |..|+.|||.||.....+
T Consensus 162 Gaip~Lv~LL~s~~~~v-~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHI-SEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHTTCSCHHH-HHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCHHH-HHHHHHHHHHHhccCHHH
Confidence 99999999998765544 678999999999875443
No 220
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.64 E-value=0.0071 Score=57.95 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=86.0
Q ss_pred HHHHhhhCCCCCCCCCccchhhhhHHHHhhhc-CCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhh
Q 046116 43 VAQCFKELPLSRLRDDQEHVLVLSGLFNIAIK-QPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIG 121 (604)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~g 121 (604)
.-.+++.|.. .|.+.+.-++..|.+++-. .++-..+.+.|++.-...++ ++.+.-+=.+|+.++|
T Consensus 14 ~~~~~~~L~s---~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-----------~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 14 LPQMTQQLNS---DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALS 79 (252)
T ss_dssp HHHHHHHHHS---SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence 5566777776 6666666777777776554 22222455556666555544 3445567789999999
Q ss_pred hhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116 122 SYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF 173 (604)
Q Consensus 122 sy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f 173 (604)
..+....+.....++.|+||+|+.+|+.. ++--++.|+++|++|+..+..-
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchH
Confidence 99998889999999999999999999985 5667899999999998876544
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.55 E-value=0.034 Score=52.90 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCc-----------------ccchHHHHHHHHHHHHHcCCcHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLC---PLKM-----------------RKERIVLYSNRAQCYLMLKKPEA 471 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~---P~~~-----------------~~~~a~l~~NRA~~ylkLgdy~e 471 (604)
..++.+.-.|+.+|..++|..|...|++||.+. |... ......+.+..|.||.+++++.+
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 468899999999999999999999999998762 1100 11134788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 046116 472 AISDTTRALSLSKTMSSHSKSLWRRSQAY 500 (604)
Q Consensus 472 AI~D~~rALeLdPd~~~n~KA~~rrG~a~ 500 (604)
||...... |...+.++...-+|+.|
T Consensus 141 Ai~~Le~I----p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGI----PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTS----CGGGCCHHHHHHHHHHC
T ss_pred HHHHHhcC----CchhcCHHHHHHHHHHh
Confidence 99986654 32223566666666654
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.35 E-value=0.066 Score=48.69 Aligned_cols=78 Identities=12% Similarity=-0.083 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEE---AVKKYSKALDLC-PLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSH 489 (604)
Q Consensus 414 A~~lk~~GN~lfk~Gdyee---AIe~YtkALel~-P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n 489 (604)
.+...+.|..+.+..+-.. +|..+...+.-. |. ..-.+++.+|..|+++|+|++|...++..|+.+|+ |
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~----~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~---n 107 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ---N 107 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---C
Confidence 5667788888888776655 999999988876 52 26789999999999999999999999999999999 8
Q ss_pred HHHHHHHHH
Q 046116 490 SKSLWRRSQ 498 (604)
Q Consensus 490 ~KA~~rrG~ 498 (604)
..|.--+..
T Consensus 108 ~QA~~Lk~~ 116 (126)
T 1nzn_A 108 NQAKELERL 116 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887654433
No 223
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.17 E-value=0.036 Score=60.31 Aligned_cols=103 Identities=17% Similarity=0.005 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------cccchHHHHHHHHHHHHHcCCcHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLK--------------------MRKERIVLYSNRAQCYLMLKKPEAAI 473 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~--------------------~~~~~a~l~~NRA~~ylkLgdy~eAI 473 (604)
+..+...|+.+++.|+|++|++.|.+|....++. .-...+.-......+|.+.|+|++|+
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 3466677777777777777777777773221110 00012223344668899999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc
Q 046116 474 SDTTRALSLSKTMSSHSKSLWRRSQAYDM--MGLAKESLMDALTFIGS 519 (604)
Q Consensus 474 ~D~~rALeLdPd~~~n~KA~~rrG~a~~~--LGd~dEAL~d~~kALkl 519 (604)
..+++++.+++. +...+..+|.+|.+ .++..|+++.|...+++
T Consensus 228 ~lLe~aL~le~a---h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 228 TMLEAALGLERA---HMGMFTELAILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp HHHHHHTTSTTC---CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHhCCcHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 999999999999 99999999887754 56777788777665555
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.16 E-value=0.36 Score=44.83 Aligned_cols=76 Identities=7% Similarity=-0.162 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
.+...+.+..+.+..+ ..++|..+...+.-.|.. .-.+++.+|..|+++|+|++|...++..|+++|+ |.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~---n~ 111 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NK 111 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC---CH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cH
Confidence 5566777777777765 457999999999988852 6788888999999999999999999999999999 87
Q ss_pred HHHHHH
Q 046116 491 KSLWRR 496 (604)
Q Consensus 491 KA~~rr 496 (604)
.|.--+
T Consensus 112 QA~~Lk 117 (144)
T 1y8m_A 112 QVGALK 117 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765433
No 225
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.11 E-value=0.019 Score=53.37 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=73.7
Q ss_pred hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-++..|.+++...|+. ..+.+.|++.-+..|+. +.+.-|=..|+.++|..+....+.....++.|+||
T Consensus 31 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (210)
T 4db6_A 31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (210)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHH
Confidence 4777777877544322 23445566666665553 34556777899999999988889999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+|+.+|... +.--++.|+.+|++|+.+..
T Consensus 100 ~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 100 ALVQLLSSP-NEQILQEALWALSNIASGGN 128 (210)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHHHcCCH
Confidence 999999877 56678899999999997543
No 226
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.93 E-value=0.019 Score=54.84 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=73.5
Q ss_pred hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
.++..|+|++...++- ..+.+.|++.-+..++ ++.+.-+=..|+.++|..+....+.....++.|+||
T Consensus 115 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 183 (252)
T 4db8_A 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-----------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-----------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 4777888887655544 4455556665555544 344566778999999999998888888899999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHD 170 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 170 (604)
+|+++|... ..--+..|+++|+.|+++.
T Consensus 184 ~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 184 ALVQLLSSP-NEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHGGGCS-SHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHHhcCC
Confidence 999999987 4445889999999999654
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.81 E-value=0.25 Score=45.45 Aligned_cols=79 Identities=8% Similarity=-0.150 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 414 VFMLKQQGNQEFWAGY---IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~Gd---yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
++...+.+..+.+..+ ...+|..+...+...|.. .-.+++.+|..+.++|+|+.|...++..|+++|+ |.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~---N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---NK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT---CH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---CH
Confidence 4566677777776664 468999999999888842 6888999999999999999999999999999999 88
Q ss_pred HHHHHHHHH
Q 046116 491 KSLWRRSQA 499 (604)
Q Consensus 491 KA~~rrG~a 499 (604)
.|.--+..+
T Consensus 113 QA~~Lk~~I 121 (134)
T 3o48_A 113 QVGALKSMV 121 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876444333
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.81 E-value=0.13 Score=53.32 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWA-----GYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM-LKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~-----GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk-Lgdy~eAI~D~~rALeLdPd 485 (604)
....+.-.|..+.+. |+.++|.++|.+||+++|+. +...+...|..+.. .|++++|...+++|+..+|.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~----~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH----DPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT----CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 466888999999984 99999999999999999971 38888888999988 59999999999999999887
No 229
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.75 E-value=0.091 Score=59.82 Aligned_cols=103 Identities=9% Similarity=-0.134 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAV-KKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS------- 483 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAI-e~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd------- 483 (604)
...+.|...+.-+...|+.++|+ ..|.+|+..+|. ...+|...|......|+++.|...+++++..-
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 34667888888888889989997 999999999998 78899999999999999999999999999752
Q ss_pred ----CCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 484 ----KTMS--------SHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 484 ----Pd~~--------~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
|.+. .....|...+......|..+.|...|.+|++.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4200 03457888888888889999999999999887
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.47 Score=54.81 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
...-+..++.-+..+|+|+-|+..-.+|+...|. ....|+.+|.||.++|+|+.|+-.++.+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4557888899999999999999999999999999 8999999999999999999999777665
No 231
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.61 E-value=0.02 Score=58.71 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=69.6
Q ss_pred hhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116 64 VLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP 142 (604)
Q Consensus 64 ~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~ 142 (604)
++..|.|++-.+|+-+ .|..-|.+.-...|+.. .+.-+=--|+-.|+..+-...+..+..|++|+|||
T Consensus 145 A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----------~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 5566666665555433 46677888777777653 23334456777787777777788888999999999
Q ss_pred HHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116 143 LMELLRGKISWVEERVAVRALGHLASH 169 (604)
Q Consensus 143 l~~~~~~~~~wve~r~~~r~l~h~a~~ 169 (604)
|++||+.. .--=|..|++||+.|++.
T Consensus 214 Lv~LL~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence 99999976 445578999999999988
No 232
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.52 E-value=0.042 Score=51.08 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=57.0
Q ss_pred ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+++.+.-+=..|+..|+..+....+.....+++|+||+|+++|+.. ..--+..|+++|+.+++.+.
T Consensus 21 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN 86 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc
Confidence 4455666778899999999988899999999999999999999987 66778899999999997654
No 233
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.38 E-value=0.11 Score=55.69 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=77.0
Q ss_pred hhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHH
Q 046116 63 LVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLP 142 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~ 142 (604)
-++..|+|++...|+.+....-|++..+..|+ ++.+.-|=..|+.+++..+-...+..+..+..|+||+
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-----------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLI-----------HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 47888999998876655544556666666655 3345567778999999999888888888899999999
Q ss_pred HHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 143 LMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 143 l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
|+++|... ++--+..|+++||.|++...
T Consensus 291 Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 291 LVELLLHP-SPSVLIPALRTVGNIVTGDD 318 (528)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHcCC-ChhHHHHHHHHHHHHHcCCH
Confidence 99999877 56778999999999998653
No 234
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.26 E-value=0.02 Score=60.10 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCCCCCCCCccchhhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhc---------------------------CC--
Q 046116 50 LPLSRLRDDQEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGI---------------------------TD-- 100 (604)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~---------------------------~~-- 100 (604)
||- .+++....++..|+|+|-..-+=..+.+.|+.+.+..|+.... .+
T Consensus 41 ~~~---~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~ 117 (354)
T 3nmw_A 41 MPA---PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117 (354)
T ss_dssp CCC---GGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred CCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 555 4444455688899999875222334678899999998885310 11
Q ss_pred chh--------------hccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhh
Q 046116 101 KEW--------------LLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGH 165 (604)
Q Consensus 101 ~~~--------------~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h 165 (604)
..+ |++..+.-+--.|+-.++.-+.+ .++....-+++|+||||+++|...-+.--++.|++||++
T Consensus 118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111 11122222223445555555554 234455556899999999986433366678899999999
Q ss_pred hhhcc
Q 046116 166 LASHD 170 (604)
Q Consensus 166 ~a~~~ 170 (604)
|+++.
T Consensus 198 Ls~~~ 202 (354)
T 3nmw_A 198 LSAHC 202 (354)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 99954
No 235
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.22 E-value=0.037 Score=52.25 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=72.5
Q ss_pred hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-++..|+|++...|+. ..+.+.|++.-...++ ++.+.-+=..|+.+++..+....+.....++.|+||
T Consensus 63 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 131 (252)
T 4hxt_A 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLL-----------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 131 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-----------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 4778888887653321 1223335555555544 345667778999999999988889999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHD 170 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 170 (604)
+|+++|+..- +--++.|+++|++|+++.
T Consensus 132 ~L~~~l~~~~-~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 132 VLVKLLTSTD-SEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHHTTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence 9999999665 445889999999999864
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.98 E-value=0.32 Score=44.70 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 452 RIVLYSNRAQCYLMLKKP---EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy---~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+..-+|.|.|+.+..+. ..+|.-+...++-+|.. ....+|.+|.+++++|+|++|+.....+|+..|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 478888899999988754 46999999999988841 5789999999999999999999999999999443
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.95 E-value=0.5 Score=43.88 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKP---EAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy---~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
....-+|.|.|+.+..+. .++|.-++..++-+|.. ....+|.+|..++++|+|++|+...+..|+..|
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 578888999999998865 46999999999988841 678899999999999999999999999999944
No 238
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.93 E-value=0.23 Score=56.49 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 046116 430 IEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAI-SDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKE 508 (604)
Q Consensus 430 yeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI-~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dE 508 (604)
.+.....|.+||..+|. .+.+|...|.-....|+.++|+ ..+.+|+...|. +...++..+......|++++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~-----~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCF-----APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---SAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp HHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHH
Confidence 34567899999999999 9999999999999999999998 999999999999 88889999999999999999
Q ss_pred HHHHHHHHHhch
Q 046116 509 SLMDALTFIGSR 520 (604)
Q Consensus 509 AL~d~~kALkl~ 520 (604)
|...|+++++..
T Consensus 397 aR~iyek~l~~l 408 (679)
T 4e6h_A 397 IETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.62 E-value=0.26 Score=52.75 Aligned_cols=102 Identities=10% Similarity=-0.106 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CCCCCCHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDLCPL-KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS----KTMSSHSKS 492 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel~P~-~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd----Pd~~~n~KA 492 (604)
...|..++..|+|.+|+..+++.++.+.. ..+.....++......|..++++.++-..+++|.... ++ +...|
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~--p~i~a 180 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP--PKVQG 180 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC--HHHHH
Confidence 37899999999999999999999987544 2234577889999999999999999999999987654 22 12334
Q ss_pred --HHHHHHHHH-HcCCHHHHHHHHHHHHhchh
Q 046116 493 --LWRRSQAYD-MMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 --~~rrG~a~~-~LGd~dEAL~d~~kALkl~~ 521 (604)
...-|..+. ..++|.+|..+|-++++...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 444588888 89999999999999986643
No 240
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.57 E-value=0.026 Score=62.66 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=53.8
Q ss_pred cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccch-hhHHHHHHHHhhhhhhcc
Q 046116 106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKIS-WVEERVAVRALGHLASHD 170 (604)
Q Consensus 106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~-wve~r~~~r~l~h~a~~~ 170 (604)
++.+.-+=..|+.+++..+.+..+..+..++.|+||+|+++|.-.=+ +--+..|++||++|+++.
T Consensus 273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence 44566677889999999998888888889999999999999985432 566788999999998754
No 241
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.41 E-value=0.13 Score=54.91 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=82.3
Q ss_pred CCCccchhhhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHH
Q 046116 56 RDDQEHVLVLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKA 134 (604)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~a 134 (604)
.|++-+.-+...|.|++...|+.- .+...|.+.-+..|+. ..|.-+-..|+..++.-+....+.-..-
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-----------s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-----------SPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-----------SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344455567888888875444322 6778888888877764 2345566789999988887767777777
Q ss_pred HhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHh
Q 046116 135 VKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVAL 178 (604)
Q Consensus 135 v~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~ 178 (604)
+++|+||+|++||+..-+---|+-|+.||+.|++++.+=.+|.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~ 126 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh
Confidence 89999999999998333445578899999999999766555653
No 242
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.40 E-value=0.058 Score=58.66 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred hhhHHHHhhhcCCCCCCCc--cccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCc
Q 046116 64 VLSGLFNIAIKQPDDPEFP--SLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVV 140 (604)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~--~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~ 140 (604)
+...|.|++...++.+.+. .-|++.-.. .|++..+.-+-..|+-.|+.-+.+ ..+.-..-+++|+|
T Consensus 220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV-----------~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI 288 (458)
T 3nmz_A 220 AGMALTNLTFGDVANKATLCSMKGCMRALV-----------AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCHHHHHHHH-----------HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCCcccHHHHHHcCCcHHHHH-----------HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCH
Confidence 5566777776544333322 223344333 344555666778888888887775 34555566789999
Q ss_pred HHHHHHhcccchhhHHHHHHHHhhhhhhcc-cchHHHH
Q 046116 141 LPLMELLRGKISWVEERVAVRALGHLASHD-KTFEAVA 177 (604)
Q Consensus 141 ~~l~~~~~~~~~wve~r~~~r~l~h~a~~~-~~f~~~~ 177 (604)
|||+++|...-+.--++.|++||+.|+++. ..=+.|.
T Consensus 289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999998644336667889999999999953 3334443
No 243
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.04 E-value=0.17 Score=58.10 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=66.4
Q ss_pred hhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHH
Q 046116 64 VLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPL 143 (604)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l 143 (604)
++..|.|++-..|+..-+ -|++.....|+ .+ .+.-+=..|+.+++..+.+..+.....++.|+||+|
T Consensus 380 a~~~L~~L~~~~~~~~~~--~~~i~~Lv~lL----~~-------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 446 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQEGM--EGLLGTLVQLL----GS-------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446 (780)
T ss_dssp HHHHHHHHHTTCTTCSCC--HHHHHHHHHHT----TC-------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHhccchhhhhh--hhHHHHHHHHH----cC-------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 556666777655442211 23444333333 33 344455789999999999988888889999999999
Q ss_pred HHHhcccchh-hHHHHHHHHhhhhhhcc
Q 046116 144 MELLRGKISW-VEERVAVRALGHLASHD 170 (604)
Q Consensus 144 ~~~~~~~~~w-ve~r~~~r~l~h~a~~~ 170 (604)
+++|.-.-++ --+..|+++||+|++..
T Consensus 447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 447 VRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 9999864455 56788999999998643
No 244
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.03 E-value=0.13 Score=51.08 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=78.3
Q ss_pred hhhhHHHHhhhcCC-CCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQP-DDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p-~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-+...|.|++...| +.-.+.+.|.+.-.-.|+. ..+.-+-..|+..++.-+....+.-..-+++|.||
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-----------s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~ 97 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-----------VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVP 97 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHH
Confidence 46677888886554 4446677888776666553 34556778899999998887667777777999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA 177 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 177 (604)
||+.||+..=++--|+-|+.||.+|++++..=+.|.
T Consensus 98 ~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~ 133 (233)
T 3tt9_A 98 RLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI 133 (233)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 999999843367789999999999999887544443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.25 Score=57.00 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
.++.-=|.-.+..|+|+-|+..+++|+.+.|. ..+.|++++.+|..+|+|+.|+-.+.-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444566677889999999999999999999 9999999999999999999999885554
No 246
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.19 E-value=0.26 Score=52.87 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=72.9
Q ss_pred hhhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-++..|+|++... |.-+....-|++..+..|+. +.+.-|=..|+.+|+..+-...+..+..++.|+||
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 3677888888765 44443334466666666542 34456678899999999988777778888999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+|+++|... +|--+..|+++||++++...
T Consensus 303 ~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 303 RLVELLSHE-STLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCC-ChhhHHHHHHHHHHHHcCCH
Confidence 999999854 67778899999999998653
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.80 E-value=1.5 Score=41.39 Aligned_cols=103 Identities=13% Similarity=-0.071 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCCcc---cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 046116 416 MLKQQGNQEFWAGYI------EEAVKKYSKALDLCPLKMR---KERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM 486 (604)
Q Consensus 416 ~lk~~GN~lfk~Gdy------eeAIe~YtkALel~P~~~~---~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~ 486 (604)
.|..-...+-+.|+. +.-++.|.+|+..-|.... +-++-+|.+-| .+..+++.++|-..++.++++...
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKk- 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKK- 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHH-
Confidence 444444444444665 7888999999998876211 12456666666 446779999999999999999777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 487 SSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.++.|...|+--...|+...|.+.+.+|+..+++
T Consensus 93 --FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 93 --FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp --BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 8999999999999999999999999999999654
No 248
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.64 E-value=0.52 Score=48.46 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=73.1
Q ss_pred hhhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
.++..|+|++... |..+....-|++..+..++. +.+.-+=..|+..++..+-+..+.....++.|+||
T Consensus 169 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 237 (450)
T 2jdq_A 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237 (450)
T ss_dssp HHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence 4778888888765 44332223577777776653 23445667889999999888777788888999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+|+++|.. -.|--+..|+++|+.+++...
T Consensus 238 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 238 RLVELLMH-NDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCC-CchhHHHHHHHHHHHHhhCCh
Confidence 99999984 467778899999999998653
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.44 Score=50.85 Aligned_cols=104 Identities=11% Similarity=-0.070 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CCC--H
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTM-SSH--S 490 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~-~~n--~ 490 (604)
...+...|..+++.|++++|++.|.++.+.+.. ......++.+...+++..++|..+....++|-.+-... ... .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 346778999999999999999999999998765 23467888888999999999999999999997663321 112 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 491 KSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 491 KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+.....|..+...++|.+|...|..++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33445677888899999999999888765
No 250
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.34 E-value=0.15 Score=57.22 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=74.2
Q ss_pred hhhHHHHhhhcC-CCCCCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccc-hHHHHHHHHhcCCcH
Q 046116 64 VLSGLFNIAIKQ-PDDPEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMN-KAHFAEKAVKSGVVL 141 (604)
Q Consensus 64 ~~~~~~~~~~~~-p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~-~~~~~~~av~~~~~~ 141 (604)
+...|.|+|... ++--.+.+.|.+.-+..|+. ..|.-+=..|+-.++.-+.. ..+.-..-+++|+||
T Consensus 68 Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-----------s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp 136 (584)
T 3l6x_A 68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-----------HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP 136 (584)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-----------CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-----------CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHH
Confidence 555566666422 22223556666666555543 34666778999999999885 477777788999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA 177 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 177 (604)
||++||+.--+..-|+.|+.||.+|++++..=.+|.
T Consensus 137 ~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~ 172 (584)
T 3l6x_A 137 ALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172 (584)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence 999999953344458999999999999887666665
No 251
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.82 E-value=0.22 Score=53.26 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=81.2
Q ss_pred HHHHHHhhhCCCCCCCCCccchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhh
Q 046116 41 AKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAH 118 (604)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah 118 (604)
..|....+-|-. .|.+-+.-++..|-+++-..+++| ++..-|++.-+..++.. +.+.-|=..|+.
T Consensus 74 ~~l~~lv~~L~s---~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----------~~~~~v~~~A~~ 140 (528)
T 4b8j_A 74 ESLPAMIGGVYS---DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----------EDFPQLQFEAAW 140 (528)
T ss_dssp -CHHHHHHHHTS---SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----------CCCHHHHHHHHH
Confidence 345566666533 333344446666666665544332 34455666666655532 223567788999
Q ss_pred hhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 119 IIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 119 ~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
++|...-...++....+++|+||+|+.+|... +.--++.|++||+.|+....
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCh
Confidence 99999988889999999999999999999875 66678899999999987644
No 252
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.46 E-value=0.34 Score=52.41 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=72.2
Q ss_pred cchhhhhHHHHhhhcCCCCC--CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhc
Q 046116 60 EHVLVLSGLFNIAIKQPDDP--EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKS 137 (604)
Q Consensus 60 ~~~~~~~~~~~~~~~~p~~~--~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~ 137 (604)
.+.-++..+.++--..++-| +...-|++--.-.|+ .+..|.-|=++||-+++...-...+....-|++
T Consensus 73 ~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL----------~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~ 142 (510)
T 3ul1_B 73 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142 (510)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHT----------TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHH----------CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 33346666666644433333 445556554444433 345566777899999998877778888888999
Q ss_pred CCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccch
Q 046116 138 GVVLPLMELLRGKISWVEERVAVRALGHLASHDKTF 173 (604)
Q Consensus 138 ~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f 173 (604)
|+||+|+++|+..=. --|+.|+.|||.||.....+
T Consensus 143 GaIp~Lv~lL~s~~~-~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 143 GAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHH
Confidence 999999999987544 34788999999999875544
No 253
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.54 E-value=0.36 Score=51.77 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=75.6
Q ss_pred HHHHHHhhhCCCCCCCCCccchhhhhHHHHhhhcCCCCCC---CccccHHHHHHHHHHhhcCCchhhccCC-cccchhhh
Q 046116 41 AKVAQCFKELPLSRLRDDQEHVLVLSGLFNIAIKQPDDPE---FPSLGIFECMTKLIHKGITDKEWLLRDQ-NIYIPYYA 116 (604)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~lg~~~~~~~l~~~~~~~~~~~~~~~-~~~~~yy~ 116 (604)
..|..+++.|-. .|.+-+..++..|-+++-. .++|. +..-|++.-+..++ .+. |.-|=+.|
T Consensus 87 ~~i~~lv~~L~s---~~~~~~~~A~~~L~~ll~~-~~~~~~~~~~~~g~i~~Lv~~L-----------~~~~~~~v~~~A 151 (530)
T 1wa5_B 87 QELPQMTQQLNS---DDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFM-----------RENQPEMLQLEA 151 (530)
T ss_dssp CCHHHHHHHHSC---SSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTT-----------STTSCHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCC-CCCccHHHHHHCCCHHHHHHHh-----------CCCCCHHHHHHH
Confidence 446666766644 3322333455555555433 23332 23334444333322 232 66778899
Q ss_pred hhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 117 AHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 117 ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+.++|...-...++...-+..|+||+|+++|... +.--++.|+++|++|++...
T Consensus 152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCc
Confidence 9999999887788888888999999999999854 55568889999999998653
No 254
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.51 E-value=6.3 Score=42.73 Aligned_cols=98 Identities=7% Similarity=-0.088 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSK 491 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~K 491 (604)
...+...-+.+.+.|++++|.+.|.+..+. .|+ ...|+.+-.+|.+.|++++|...+++..+..-. ++..
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~ 176 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEP 176 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHH
Confidence 456777778889999999999999998875 465 788888889999999999999999998864311 2578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.|.-+-.++...|+.++|...+++.-+.
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999887665
No 255
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.12 E-value=1.2 Score=46.98 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=74.8
Q ss_pred hhhhHHHHhhhcCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccch---HHHHHHHHhcC
Q 046116 63 LVLSGLFNIAIKQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNK---AHFAEKAVKSG 138 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~---~~~~~~av~~~ 138 (604)
-+...|+|++...|+. ..+.+.|++..+..++... +.+--+-..|+.++|..+.+. +......+..|
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~ 355 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC
Confidence 3677788887643311 1233456777766666542 122345678999999888753 33555677899
Q ss_pred CcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHH
Q 046116 139 VVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVA 177 (604)
Q Consensus 139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~ 177 (604)
+||+|+.+|+..-+|--++.|+.+|+.++.....-..+.
T Consensus 356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 394 (529)
T 1jdh_A 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 394 (529)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHH
Confidence 999999999988789999999999999998776554444
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.65 E-value=3.4 Score=42.15 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=57.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 421 GNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 421 GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+.+++.|+.++|++.....|+-+|. ++.+...+.+.+.-.|+|+.|...++.+.+++|+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~-----da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPK-----DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 35678999999999999999999999 9999999999999999999999999999999999
No 257
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.65 E-value=0.15 Score=53.41 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred hhhHHHHhhh---cCCCC-CCCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCC
Q 046116 64 VLSGLFNIAI---KQPDD-PEFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGV 139 (604)
Q Consensus 64 ~~~~~~~~~~---~~p~~-~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~ 139 (604)
+...|||++. ..|+. ..+.+-|++.....|+.. .+.-+=-.|+-+|+..+....+.....+++|+
T Consensus 238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-----------HSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-----------CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 4555666665 22221 123344555555555432 33346677888999988877888888899999
Q ss_pred cHHHHHHhcccchhhHHHHHHHHhhhhhhcccc
Q 046116 140 VLPLMELLRGKISWVEERVAVRALGHLASHDKT 172 (604)
Q Consensus 140 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~ 172 (604)
||||++||+.+-.-| ++.|+.||..|+++...
T Consensus 307 i~~Lv~LL~s~~~~i-~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMI-AMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCSSHHH-HHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHH-HHHHHHHHHHHHcCCHH
Confidence 999999998875544 89999999999987554
No 258
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=87.40 E-value=0.45 Score=48.57 Aligned_cols=127 Identities=19% Similarity=0.206 Sum_probs=84.5
Q ss_pred ccC-CCchhhhHHHHHHhhh-CCCCCCCCC-----ccchhhhhHHHHhhhcCCCCCCCccccHHHHHHHHHHhhcCCchh
Q 046116 31 MNE-QPPSLRRAKVAQCFKE-LPLSRLRDD-----QEHVLVLSGLFNIAIKQPDDPEFPSLGIFECMTKLIHKGITDKEW 103 (604)
Q Consensus 31 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~ 103 (604)
|+- +|+..|...+-..++. .|.+++..+ +..+.++.-|-+..-..++=..|.++|.+. .|+. -
T Consensus 20 ~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~---~Lv~-------~ 89 (296)
T 1xqr_A 20 MRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMH---LLVG-------R 89 (296)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH---HHHH-------T
T ss_pred HcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHH---HHHH-------H
Confidence 444 4667777777777774 465432221 133334444444432222222467788875 3433 2
Q ss_pred hccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcc--cchhhHHHHHHHHhhhhhhc
Q 046116 104 LLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRG--KISWVEERVAVRALGHLASH 169 (604)
Q Consensus 104 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~--~~~wve~r~~~r~l~h~a~~ 169 (604)
|++..+--|=-+|+-+||.-.-+..+.....++.|+||||+.||+- ..+ -++-|+.||+-|+.+
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~--v~~~A~~ALsnl~~~ 155 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT--VRVKALFAISCLVRE 155 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH--HHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHcC
Confidence 4455667777899999999999999999999999999999999983 332 378899999999754
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.07 E-value=2.7 Score=46.15 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLW 494 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~ 494 (604)
.-+...|...--...+..|...|.+|+.+.|. ....|+.+|..+...|+.-+|+-+|.+++..... +..|.-
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P---f~~a~~ 224 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP---FPAAST 224 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC---CHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC---ChhHHH
Confidence 46778899988889999999999999999999 8999999999999999999999999999998877 888888
Q ss_pred HHHHHHHHc
Q 046116 495 RRSQAYDMM 503 (604)
Q Consensus 495 rrG~a~~~L 503 (604)
++...+...
T Consensus 225 nL~~~f~~~ 233 (497)
T 1ya0_A 225 NLQKALSKA 233 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 260
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=86.48 E-value=0.67 Score=47.61 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=59.0
Q ss_pred hhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 046116 103 WLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHD 170 (604)
Q Consensus 103 ~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 170 (604)
-++++.+.-|-..|+.++|...-...++....++.|+||+|+.+|...-++--++.|+++|++|+.+.
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34566777888999999999988888888888899999999999997677888999999999999765
No 261
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.24 E-value=1.5 Score=47.45 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=54.0
Q ss_pred ccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 105 LRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 105 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
+++.+--|=..|+..++.-+-+..+.....+.+|+||+|++||+.. +.--|+-|+||||.++++..
T Consensus 260 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccch
Confidence 3445555667889999888888888888889999999999999875 45568899999999998753
No 262
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=85.05 E-value=19 Score=34.88 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hcC--CCC-----
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL--SLS--KTM----- 486 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL--eLd--Pd~----- 486 (604)
--.-.+-.+|-.|+|..|+-... .-+ .+...+..+.||.++++|..|+...+..| +++ |+.
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lN-----T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLH-----KLN-----TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHH-----TCC-----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HHhhhhhhhhhcchHhHHHHHHH-----hcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 34467888999999988876642 222 45666668999999999999999999999 333 320
Q ss_pred -----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 487 -----SSHSKS-LWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 487 -----~~n~KA-~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
+..-+- +.-+|..+.+.|+-+||+..|....+.
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 113333 344799999999999999999998876
No 263
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=84.47 E-value=4.5 Score=43.66 Aligned_cols=103 Identities=11% Similarity=-0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-----------------------------------cchHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMR-----------------------------------KERIVLYSN 458 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~-----------------------------------~~~a~l~~N 458 (604)
...|...+.-+...|+.++|...|.+|+.. |.... .....+|..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 567888888888999999999999999999 98210 001123444
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhchh
Q 046116 459 RAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG-LAKESLMDALTFIGSRM 521 (604)
Q Consensus 459 RA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG-d~dEAL~d~~kALkl~~ 521 (604)
.+....+.++.+.|...+.+| +..+. ....|...|..-+..+ +.+.|...|+.+++..+
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 444444567788899999999 43333 5667777787777777 59999999999999854
No 264
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=84.45 E-value=4.7 Score=46.90 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=82.8
Q ss_pred CCCccchhhhhHHHHhhhc---CCCCCCCccccH---HHHHHHHHHhhc--------------------CCchhhcc---
Q 046116 56 RDDQEHVLVLSGLFNIAIK---QPDDPEFPSLGI---FECMTKLIHKGI--------------------TDKEWLLR--- 106 (604)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~---~p~~~~~~~lg~---~~~~~~l~~~~~--------------------~~~~~~~~--- 106 (604)
.|+.=+..++++||+++-. .|..|.|-+-++ .....+|+..+= ..+..+..
T Consensus 342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g 421 (810)
T 3now_A 342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA 421 (810)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence 3444566899999999864 344566765333 444455554441 11122222
Q ss_pred ----------CCcccchhhhhhhhhhhccchH----------------------------HHH----HHHHhcCCcHHHH
Q 046116 107 ----------DQNIYIPYYAAHIIGSYTMNKA----------------------------HFA----EKAVKSGVVLPLM 144 (604)
Q Consensus 107 ----------~~~~~~~yy~ah~~gsy~~~~~----------------------------~~~----~~av~~~~~~~l~ 144 (604)
..+.-|-|.|+.++|.-|-..+ +|- +.-+++|+||+|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 2345577999999998876331 233 4567999999999
Q ss_pred HHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHH
Q 046116 145 ELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNI 190 (604)
Q Consensus 145 ~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~ 190 (604)
.||+-.-. -=|.-|++||+.||+.+..=..|..++ +++.=+++
T Consensus 502 ~LL~s~s~-~vqe~Aa~aL~NLA~d~~~r~~Vv~~G--aip~Lv~L 544 (810)
T 3now_A 502 ALAKTESH-NSQELIARVLNAVCGLKELRGKVVQEG--GVKALLRM 544 (810)
T ss_dssp HHHTCCCH-HHHHHHHHHHHHHHTSHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHcCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHH
Confidence 99985332 237789999999998765445555543 45544444
No 265
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.03 E-value=1.3 Score=47.75 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=74.9
Q ss_pred hhhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
-+...|+|+|...|+.- .+.+.|++.....| ++..+.-|=.+|+-.+|....+.+++....++.|+||
T Consensus 120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l-----------L~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~ 188 (510)
T 3ul1_B 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISL-----------LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188 (510)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-----------TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-----------HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH
Confidence 36778888886433221 23445555554444 4556777889999999999999999999999999999
Q ss_pred HHHHHhcccc----hhhHHHHHHHHhhhhhhcccchHHH
Q 046116 142 PLMELLRGKI----SWVEERVAVRALGHLASHDKTFEAV 176 (604)
Q Consensus 142 ~l~~~~~~~~----~wve~r~~~r~l~h~a~~~~~f~~~ 176 (604)
||+.+|...- +---+|.|+.+|..++......+.+
T Consensus 189 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 9999998532 2334788999999998876555443
No 266
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.40 E-value=0.88 Score=47.93 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=74.3
Q ss_pred hhhhHHHHhhhcCCCCCC-CccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDDPE-FPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~-~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
.++..|+|++...++..+ +-+.|++.-+..++. +.+.-+=..++.+++..+...++....-++.|+||
T Consensus 120 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----------~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----------KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 588888888887654322 224566665555543 23444556677888888887788888888999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHH
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAV 176 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~ 176 (604)
+|+.+|+..-..+-+..|.++|..|+++...=..+
T Consensus 189 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 99999998777777778999999999876543333
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.49 E-value=4.4 Score=33.37 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
+.++.+.....-...|..+...|++++|+.++.+||..+|.
T Consensus 9 d~e~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 9 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 44555566777889999999999999999999999999998
No 268
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=82.34 E-value=0.85 Score=49.49 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=47.1
Q ss_pred chhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 112 IPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 112 ~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
|=-.|+-+|+..+....+.....+++|+||||++||+.+=.- -+++|+-||.+|+++..
T Consensus 395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~-v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH-HHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCCH
Confidence 334567777777766677788888999999999999877444 48999999999998753
No 269
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=81.70 E-value=1.6 Score=43.17 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=48.8
Q ss_pred hhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhc-ccchHHHHhhHHHHHHHHHHH
Q 046116 115 YAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASH-DKTFEAVALYEVEIIELAKNI 190 (604)
Q Consensus 115 y~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~-~~~f~~~~~~~~~~~~~~~~~ 190 (604)
.||-.|..-+.+..+--..-+++|+||||++||+-. +=.-|+.|+.||..|++. +..=.+|.+++ .|+.-+++
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G--aI~~Lv~l 102 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELN--GVPRLLQV 102 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcC--CHHHHHHH
Confidence 455556555554444445556899999999999874 445699999999999984 33335565543 44444444
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.79 E-value=13 Score=39.82 Aligned_cols=108 Identities=11% Similarity=-0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCCCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL-CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS----LSKTMS 487 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel-~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe----LdPd~~ 487 (604)
.+.--...+..++..|+|.+|.........- .....+.....++..-...|+..++|..|....+++.. ..+.+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3555677899999999999999999887643 22223445677888889999999999999999998742 222211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhch
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSR 520 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~ 520 (604)
....-+...|..+...++|.+|-..|.++++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 122345557899999999999999999998863
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.56 E-value=3.9 Score=41.68 Aligned_cols=60 Identities=10% Similarity=-0.104 Sum_probs=55.3
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 461 QCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 461 ~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
...++.|+.++|++.+...++-+|. +.+....+-+.+.-.|+++.|...++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4567889999999999999999999 99999999999999999999999999999995543
No 272
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=79.97 E-value=0.94 Score=52.72 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=69.1
Q ss_pred hhhhHHHHhhhcCCCCCCCcc---ccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCC
Q 046116 63 LVLSGLFNIAIKQPDDPEFPS---LGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGV 139 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~---lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~ 139 (604)
.+...|.|++.+...++-|+. .|++.....|+. ++.+...-+.|+-.++..+-..++..+..|++|+
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~----------~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~ 624 (810)
T 3now_A 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQ----------QDCTALENFESLMALTNLASMNESVRQRIIKEQG 624 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTS----------TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhC----------CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 366777788876433444543 444444444442 1234444467777888877777889999999999
Q ss_pred cHHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 046116 140 VLPLMELLRGKISWVEERVAVRALGHLASHDK 171 (604)
Q Consensus 140 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 171 (604)
||+|++||...=.= =|+.|+++|+.|++++.
T Consensus 625 l~~Lv~LL~s~~~~-Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 625 VSKIEYYLMEDHLY-LTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHHHHHHHSCCTT-HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHhCChH
Confidence 99999999876433 38999999999999764
No 273
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.14 E-value=6.7 Score=42.99 Aligned_cols=80 Identities=9% Similarity=-0.085 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHH
Q 046116 455 LYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYY 534 (604)
Q Consensus 455 l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~ 534 (604)
++.++|....-...+..|...|.+|+.+.|+ +..+|.++|.+....|+.-+|+-.|.+++-. ..+-.....-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-----~~Pf~~a~~n 225 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-----KFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-----SBCCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhc-----CCCChhHHHH
Confidence 4555666666667789999999999999999 9999999999999999999999999999876 2223333444
Q ss_pred HHHHHHHH
Q 046116 535 AAVMINKQ 542 (604)
Q Consensus 535 l~rlikKq 542 (604)
+..++.+.
T Consensus 226 L~~~f~~~ 233 (497)
T 1ya0_A 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 274
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=78.80 E-value=1.5 Score=46.62 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=49.9
Q ss_pred cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116 106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASH 169 (604)
Q Consensus 106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 169 (604)
+..+.-+=..|+..|+..+.+.+..-..-+++|+||+|+++|+..-. --|+.|++||..|++.
T Consensus 12 ~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQAAAGALRNLVFR 74 (457)
T ss_dssp HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcC
Confidence 33455566789999998887666666677799999999999986543 3489999999999986
No 275
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=78.30 E-value=3.2 Score=46.52 Aligned_cols=73 Identities=14% Similarity=-0.048 Sum_probs=53.2
Q ss_pred cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhc--ccchHHHHhh
Q 046116 106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASH--DKTFEAVALY 179 (604)
Q Consensus 106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~--~~~f~~~~~~ 179 (604)
+..+.-+=..||-.|..-+...++.-..-+++|+||||++||+-. +-.-|+.|+.||+.|+++ +..=.+|.++
T Consensus 58 ~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~ 132 (584)
T 3l6x_A 58 GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNC 132 (584)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHc
Confidence 334455556777777776666666667778999999999999865 445689999999999997 3333445443
No 276
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.27 E-value=9.4 Score=39.94 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRAL 480 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rAL 480 (604)
...+...+..+...|++.+|+....+++..+|. +-.+|..+-.+|...|+..+|+..|++.-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-----~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-----REPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556777888999999999999999999999 77899999999999999999999888764
No 277
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=76.88 E-value=16 Score=39.31 Aligned_cols=93 Identities=6% Similarity=-0.204 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 415 FMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLK-KPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 415 ~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLg-dy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
..|..-+....+.++.+.|...|.+| ..|.. ...+|...|..-...+ +++.|...++.+++.-|+ .++-+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~---~~~~~ 357 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD---STLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC---CHHHH
Confidence 44555555555666788888888888 33431 3556666665555555 588888888888887777 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
...+.....+|+.+.|...|.++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666667777777777666665
No 278
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=76.75 E-value=11 Score=40.70 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHh--CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHc
Q 046116 428 GYIEEAVKKYSKALDL--CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTMSSHSKSLWRRSQAYDMM 503 (604)
Q Consensus 428 GdyeeAIe~YtkALel--~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~~~n~KA~~rrG~a~~~L 503 (604)
++.++|.+.|.+..+. .|+ ...|+.+-.+|.+.|++++|+..+++..+. .| +...|.-+-.+|...
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPN------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----RLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ccceehHHHHHHHHC
Confidence 3478899999988765 455 788999999999999999999999998764 34 578899999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 046116 504 GLAKESLMDALTFIGS 519 (604)
Q Consensus 504 Gd~dEAL~d~~kALkl 519 (604)
|+.++|...|.+..+.
T Consensus 154 g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 154 GDADKAYEVDAHMVES 169 (501)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998876
No 279
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=76.68 E-value=2.2 Score=48.88 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=78.3
Q ss_pred hhhhHHHHhhhcCCCCCCCc-cccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDDPEFP-SLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~-~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
.++..|+|++...++.-... +.|++..+..|+.. .|.-+=..|+.++...+...++.....++.|.||
T Consensus 253 ~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-----------~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~ 321 (780)
T 2z6g_A 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321 (780)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 47888889988766544333 46777777766643 3444555677777777766677777788999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHhh
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALY 179 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~ 179 (604)
+|+.+|+..-.-+-+..|+++|..|+.....++.|...
T Consensus 322 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 359 (780)
T 2z6g_A 322 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 359 (780)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHh
Confidence 99999997755555667899999999988888777644
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=76.23 E-value=12 Score=31.23 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 410 NELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 410 ~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
....+..+..+|...=+.|+|++|+.+|.+||+.
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999986
No 281
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=76.22 E-value=2.4 Score=46.88 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=73.4
Q ss_pred hhhhHHHHhhhcCCCCC-CCccccHHHHHHHHHHhhcCCchhhccCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcH
Q 046116 63 LVLSGLFNIAIKQPDDP-EFPSLGIFECMTKLIHKGITDKEWLLRDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVL 141 (604)
Q Consensus 63 ~~~~~~~~~~~~~p~~~-~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 141 (604)
.++..|+|++...++.- .+...|++.-+..++.. .|.-+-..++.+++..+....+....-++.|+||
T Consensus 117 ~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~ 185 (644)
T 2z6h_A 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185 (644)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-----------CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChH
Confidence 47888888887753221 22346776666665543 2333555667788877776777778888999999
Q ss_pred HHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHh
Q 046116 142 PLMELLRGKISWVEERVAVRALGHLASHDKTFEAVAL 178 (604)
Q Consensus 142 ~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~ 178 (604)
+|+.+|+..-...-++.|+++|..|+.+...-..+..
T Consensus 186 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 186 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 9999999775545566899999999987665555543
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.88 E-value=30 Score=41.35 Aligned_cols=97 Identities=7% Similarity=-0.102 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---------------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 418 KQQGNQEFWAGYIEEAVKKYSKALDL---CPL---------------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 418 k~~GN~lfk~GdyeeAIe~YtkALel---~P~---------------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
.-+|..++..|++++|.++|.+|-.- ... ......+..|......+.+.+-++.+++.++.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999887321 100 112234567888888999999999999999999
Q ss_pred HhcCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 046116 480 LSLSKTMSSHSK--SLWRRSQAYDMMGLAKESLMDAL 514 (604)
Q Consensus 480 LeLdPd~~~n~K--A~~rrG~a~~~LGd~dEAL~d~~ 514 (604)
|+..+....+.+ -|.+.=+.+..+|+|++|...+.
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 987654211222 46777889999999999977764
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.82 E-value=13 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
...+..+..+|...=+.|+|++|+.+|.+||+.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999986
No 284
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.99 E-value=12 Score=41.04 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=28.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 423 QEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 423 ~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
.+...|++++|.+.+. ..+ ....|.++|..+++.++++.|+..|.++
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DES-----AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455566666665532 112 3566777777777777777777766664
No 285
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.21 E-value=18 Score=39.68 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...|++.|..+.+.++++.|+.+|.++=+.. .....|...++.+......+.+.. ..+ +..|
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~-------------~l~~l~~~~~~~~~~~~~~~~a~~-~~~---~~~A- 742 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLE-------------SLFLLHSSFNNKEGLVTLAKDAET-TGK---FNLA- 742 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-------------HHHHHHHHTTCHHHHHHHHHHHHH-TTC---HHHH-
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChh-------------hhHHHHHHcCCHHHHHHHHHHHHH-cCc---hHHH-
Confidence 4689999999999999999999999863221 122333445555544444433333 333 2222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALT 515 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~k 515 (604)
..++..+|++++|++.|.+
T Consensus 743 ---~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 743 ---FNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---HHHHHHHTCHHHHHHHHHH
T ss_pred ---HHHHHHcCCHHHHHHHHHH
Confidence 2345566677666666544
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=69.89 E-value=7.4 Score=33.65 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046116 406 EMKENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL 446 (604)
Q Consensus 406 dlee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~ 446 (604)
+.++.+.....-...|..+...|+++.|+.++.+||..+|.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34555566777889999999999999999999999999998
No 287
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=63.29 E-value=17 Score=34.19 Aligned_cols=84 Identities=10% Similarity=-0.090 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCH
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHS 490 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~ 490 (604)
...+.-|..-+.- ...+|.++|-+.|+.++.++.. .+.+|...|+--+..|+...|..-+.+|+.+.|. +
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk-----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k----~ 127 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK-----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV----P 127 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT-----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB----C
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC----c
Confidence 3344445444432 4447999999999999998655 6999999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHHcC
Q 046116 491 KSLWRRSQAYDMMG 504 (604)
Q Consensus 491 KA~~rrG~a~~~LG 504 (604)
+-.+..|....+.|
T Consensus 128 ~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 128 LEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcC
Confidence 33444444444444
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=62.56 E-value=12 Score=31.01 Aligned_cols=32 Identities=28% Similarity=0.125 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=..|+|++|+.+|..|+++
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888999999999999999886
No 289
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=62.46 E-value=11 Score=31.65 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.+..+..+|...-+.|+|++|+.+|.+||++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677888888888999999999999999876
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=61.44 E-value=12 Score=31.73 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=+.|+|++|+.+|..||++
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35777888888888999999999999888876
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.77 E-value=13 Score=32.96 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
..+..+..+|...=..|+|++|+.+|.+|+++
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35667777777778889999999999888775
No 292
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.63 E-value=88 Score=33.14 Aligned_cols=71 Identities=13% Similarity=-0.093 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHH-HcCCcHHHHHHHHHHHh
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYL-MLKKPEAAISDTTRALS 481 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~yl-kLgdy~eAI~D~~rALe 481 (604)
.-..+.+..+...++..+|+..+-..|++|...... ..+...+.+..--|..++ ..++|..|-.++-.+++
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 446778888899999999999999999999765310 123456777888899999 89999999999999974
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.68 E-value=26 Score=37.07 Aligned_cols=70 Identities=7% Similarity=-0.058 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 452 RIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 452 ~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
...++..+|.-|+..|++++|++.+.++.............++...+++...+++..+...+.++-....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 4567788999999999999999999999887655444678999999999999999999999999977743
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=55.60 E-value=1.1e+02 Score=36.79 Aligned_cols=96 Identities=5% Similarity=-0.224 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALD-----LCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--SKTM 486 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALe-----l~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--dPd~ 486 (604)
-..+...-+.+.+.|+.++|.+.+.+.-+ ..|+ ...|+-+-..|.+.|++++|...+++..+. .|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-- 198 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-- 198 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Confidence 34577788899999999999999976543 4565 889999999999999999999999998764 45
Q ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhc
Q 046116 487 SSHSKSLWRRSQAYDMMGLA-KESLMDALTFIGS 519 (604)
Q Consensus 487 ~~n~KA~~rrG~a~~~LGd~-dEAL~d~~kALkl 519 (604)
+.-.|.-+-.++.+.|+. ++|...|++..+.
T Consensus 199 --DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 199 --DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 477888888899999984 6777777666543
No 295
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=55.51 E-value=34 Score=35.49 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Ccccc-------hHHHHHHHHHHHHHc--CCcH-HHHHHHHHHHhc
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKE-------RIVLYSNRAQCYLML--KKPE-AAISDTTRALSL 482 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~-------~a~l~~NRA~~ylkL--gdy~-eAI~D~~rALeL 482 (604)
...+.|..++..|+|++|+..|+.+|..-|- ..+++ ...+....-...+.+ .+.. ...++..+.++|
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 3457899999999999999999999987653 11111 111222222222222 2111 012344555543
Q ss_pred ---------CCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 483 ---------SKTMSSHSKSLWRRS-QAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 483 ---------dPd~~~n~KA~~rrG-~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
.|. |.-.=+|.| ...++.++|.-|..-.++.|++.+ +.++.....+++.+..+
T Consensus 184 AAYFT~c~Lqp~---H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p------~~~~~~qArkil~~ce~ 246 (320)
T 3mkr_B 184 AAYFTHSNLQPV---HMILVLRTALNLFFKLKNFRTAAAFARRLLELGP------KPEVAQQTRKILSACEK 246 (320)
T ss_dssp HHHHTTSCCCHH---HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhc
Confidence 555 444444444 467888999999999999999822 23344455555554433
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.45 E-value=28 Score=36.23 Aligned_cols=120 Identities=14% Similarity=0.018 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CcccchHHH-------HHHHHHHHHHcCCcHHHHHHHHHHHh----
Q 046116 416 MLKQQGNQEFWAGYIEEAVKKYSKALDLCPL---KMRKERIVL-------YSNRAQCYLMLKKPEAAISDTTRALS---- 481 (604)
Q Consensus 416 ~lk~~GN~lfk~GdyeeAIe~YtkALel~P~---~~~~~~a~l-------~~NRA~~ylkLgdy~eAI~D~~rALe---- 481 (604)
...+.|..++..|+|++|+..|+.+|..-|- ..+++...+ ....-...+.+.+-+-.-++-.+.++
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3456899999999999999999999987542 111111111 11111122222110000023344443
Q ss_pred -----cCCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhchhhcCCCCCCCHHHHHHHHHHHHHh
Q 046116 482 -----LSKTMSSHSKSLWRRS-QAYDMMGLAKESLMDALTFIGSRMKCKHTNRVKIPYYAAVMINKQMN 544 (604)
Q Consensus 482 -----LdPd~~~n~KA~~rrG-~a~~~LGd~dEAL~d~~kALkl~~~~~d~~~~~i~~~l~rlikKqk~ 544 (604)
|.|. |.-.=+|.| ...++.++|.-|..-.++.|++.+ +.++.....+++.+..+
T Consensus 196 FT~c~LQp~---H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p------~~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 196 FTKAKLSPI---HRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS------SGPRAEQARKIKNKADS 255 (325)
T ss_dssp GGGSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC------SSHHHHHHHHHHHHHHT
T ss_pred hccCCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhc
Confidence 3454 443334444 467888999999999999999933 23455555555555443
No 297
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=54.02 E-value=32 Score=32.73 Aligned_cols=82 Identities=10% Similarity=-0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSL 493 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~ 493 (604)
...|+..|..+..+|+++-|..+|.++=+.. .+...|.-.|+-+.-..-.+.|. ...+ +.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------------~L~~Ly~~tg~~e~L~kla~iA~-~~g~---~n--- 93 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFD-------------KLSFLYLVTGDVNKLSKMQNIAQ-TRED---FG--- 93 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------------HHHHHHHHHTCHHHHHHHHHHHH-HTTC---HH---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------------HHHHHHHHhCCHHHHHHHHHHHH-HCcc---HH---
Confidence 5689999999999999999999998764332 12333444555443333333332 2233 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMDALTF 516 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d~~kA 516 (604)
-...++..+|+++++++.|.+.
T Consensus 94 -~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 94 -SMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHcCCHHHHHHHHHHC
Confidence 2235566677777776665443
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.82 E-value=57 Score=36.59 Aligned_cols=91 Identities=11% Similarity=-0.061 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 046116 419 QQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQ 498 (604)
Q Consensus 419 ~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~ 498 (604)
..+..++..+...++...+.+++...++ ..+..-++..-++.|++..|...+.+.-.-.+. ..++.|-+|.
T Consensus 257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~---~~r~~YW~~r 327 (618)
T 1qsa_A 257 IVAWRLMGNDVTDEQAKWRDDAIMRSQS------TSLIERRVRMALGTGDRRGLNTWLARLPMEAKE---KDEWRYWQAD 327 (618)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHHTCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG---SHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHhccccCCC------hHHHHHHHHHHHHCCCHHHHHHHHHHccccccc---cHhHHHHHHH
Confidence 3444555556466788888887765544 222334444456779999999988765443334 6888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 046116 499 AYDMMGLAKESLMDALTFIG 518 (604)
Q Consensus 499 a~~~LGd~dEAL~d~~kALk 518 (604)
++..+|+.++|...|+++.+
T Consensus 328 a~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 328 LLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHhc
Confidence 99999999999999988765
No 299
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.42 E-value=1.1e+02 Score=36.59 Aligned_cols=91 Identities=13% Similarity=-0.058 Sum_probs=67.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-c----------------
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-L---------------- 482 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-L---------------- 482 (604)
....++..+.|+-|.+ .+..+|+ ++..-+-+|.+|+..|++++|...+.+|-. +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 3345667777766544 4566777 566668899999999999999999988731 1
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 483 ---SKTMSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 483 ---dPd~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
.+.....+.-|+.....+...|.++.+++-.+.|++.
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111123456777888999999999999999999987
No 300
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.29 E-value=69 Score=27.57 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLM 465 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylk 465 (604)
..+..+..+|..+|+.++|.+|...+.++..+..+ ....-..-+....|.-+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten--~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDN--EEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC--HHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999987544 11222222445555543
No 301
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.89 E-value=1e+02 Score=26.61 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 490 SKSLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 490 ~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+-|++..+..-|+|++|+...+++......
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999988888876443
No 302
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.83 E-value=1.3e+02 Score=29.09 Aligned_cols=73 Identities=12% Similarity=-0.074 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDL----CPL---------KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRA 479 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel----~P~---------~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rA 479 (604)
++...--+.-.+.+.++|..|+...+..|+- +|+ -.+.+.--.++.+|....+.|+-++||..+.+.
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 3556666777889999999999999999942 343 011223445666799999999999999999999
Q ss_pred HhcCCC
Q 046116 480 LSLSKT 485 (604)
Q Consensus 480 LeLdPd 485 (604)
...+|-
T Consensus 141 f~~~~l 146 (242)
T 3kae_A 141 FGKSFL 146 (242)
T ss_dssp HHHCCC
T ss_pred cCCccc
Confidence 888776
No 303
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=40.98 E-value=23 Score=40.97 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHH-HhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHH
Q 046116 132 EKA-VKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFEAVALYEVEIIELAKNIA 191 (604)
Q Consensus 132 ~~a-v~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~ 191 (604)
.++ +++||||+|+.+++.- +-.=|..|+|+|++|+....+=..|...+ .++.-+++.
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqG--al~~LL~lL 507 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQG--AVKIILEYL 507 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTT--HHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHH
Confidence 344 4899999999999763 66678999999999998877666666544 455445443
No 304
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=40.38 E-value=67 Score=35.33 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=23.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHh
Q 046116 404 DEEMKENELSVFMLKQQGNQE--FWAGY-IEEAVKKYSKALDL 443 (604)
Q Consensus 404 ~edlee~~~~A~~lk~~GN~l--fk~Gd-yeeAIe~YtkALel 443 (604)
...++++...|+.++.++... -+.-+ -+.||++|++||+.
T Consensus 419 i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~ 461 (526)
T 2wb7_A 419 INSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAIND 461 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777776221 11112 25677777777775
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.97 E-value=17 Score=35.00 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=39.1
Q ss_pred cCCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhcccchH
Q 046116 106 RDQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASHDKTFE 174 (604)
Q Consensus 106 ~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~ 174 (604)
.+.|-.+=+.|+..+|... ...+||+|+++|...- +--++.|+++||.++..+.+++
T Consensus 33 ~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHH
T ss_pred HcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccch
Confidence 3344455667777777654 1357899999998774 4457788899999886555544
No 306
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.45 E-value=49 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKAL 441 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkAL 441 (604)
|-..-.++..+.+.|+|++||++..+|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.24 E-value=1e+02 Score=34.10 Aligned_cols=73 Identities=8% Similarity=-0.069 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchhhc
Q 046116 451 ERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT--MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRMKC 523 (604)
Q Consensus 451 ~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd--~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~~~ 523 (604)
..+.+++-.=..|+..+.|+.|....+++.-..+. ++....-+|..|.++...++|.+|...+..|++.+|..
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 36778888888999999999999999998522211 01124556778999999999999999999999987643
No 308
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=35.20 E-value=73 Score=33.81 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 432 EAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 432 eAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+..++.|+...|. ..+.....++..+|.+|+-+++|++|+..++++|..
T Consensus 166 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 166 FIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 334444444444443 233447788899999999999999999999999863
No 309
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=33.71 E-value=19 Score=30.87 Aligned_cols=49 Identities=31% Similarity=0.360 Sum_probs=34.7
Q ss_pred CcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 108 QNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 108 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
.+-.|=+.|+..+|...- ..+||+|+++|... .|--++.|++|||.+..
T Consensus 54 ~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG 102 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc
Confidence 344566788888887641 13588999999755 45557788899998874
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.24 E-value=58 Score=36.64 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCC
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKK 468 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgd 468 (604)
++.....|..++..|+|.-|.+..+.++..+|+ +..+..-+|.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~-----~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPD-----NRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888888888888 77777777777777663
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.52 E-value=30 Score=31.36 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=14.4
Q ss_pred CcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 139 VVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 139 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
++|.|+++|... .|--++.|+++||.+..
T Consensus 108 ~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 108 AVEPLIKALKDE-DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp GHHHHHHHTTCS-SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHhCC
Confidence 455555555433 34445555555555543
No 312
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=32.02 E-value=25 Score=40.77 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=37.1
Q ss_pred hhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhh--HHHHHHHHhhhhhh
Q 046116 116 AAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWV--EERVAVRALGHLAS 168 (604)
Q Consensus 116 ~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wv--e~r~~~r~l~h~a~ 168 (604)
|+-+|++-+.+ .+.=..-|+.|++|||+.+|.-.=... =++.|++||.+|+.
T Consensus 477 A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 477 VVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 55567777766 445555678999999999998764331 15689999999985
No 313
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=31.99 E-value=96 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.022 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
.+..+|.-....|+|++|+..|..+++.+.
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345556666677888888888888888744
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=31.42 E-value=81 Score=33.49 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 432 EAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 432 eAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
..+..+++|+...|. ..+.....++..+|.+|+-+|+|++|+..++.+|..
T Consensus 172 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 172 EIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 334444444444443 233447788999999999999999999999999863
No 315
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.28 E-value=88 Score=33.65 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
.....++..+|.+|+-+++|++|+..++++|..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999864
No 316
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.27 E-value=98 Score=25.44 Aligned_cols=29 Identities=10% Similarity=-0.098 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+..+|.-....|+|++|+..|..+++.+.
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44445555566788888888877777644
No 317
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.76 E-value=80 Score=33.61 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCC---CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 046116 431 EEAVKKYSKALDLCPL---KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLS 483 (604)
Q Consensus 431 eeAIe~YtkALel~P~---~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLd 483 (604)
+..+..++.|+...|. ..+.....++..+|.+|+-+++|++|+..++++|...
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 3444455555555443 2334477889999999999999999999999999743
No 318
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.63 E-value=1.6e+02 Score=28.06 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcH
Q 046116 412 LSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPE 470 (604)
Q Consensus 412 ~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~ 470 (604)
+.+.-..-.|..++.+++|.+|-+.+++|+..+|.......-.++..+--+.+.+|++.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45777888999999999999999999999999998433334445555556667788864
No 319
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.59 E-value=4.7e+02 Score=27.05 Aligned_cols=25 Identities=8% Similarity=-0.102 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 046116 489 HSKSLWRRSQAYDMMGLAKESLMDA 513 (604)
Q Consensus 489 n~KA~~rrG~a~~~LGd~dEAL~d~ 513 (604)
+++.+...|..|..-+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6777888888888888888887776
No 320
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.26 E-value=3.1e+02 Score=25.78 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=57.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--------CCCCCCCHHHH
Q 046116 422 NQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL--------SKTMSSHSKSL 493 (604)
Q Consensus 422 N~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL--------dPd~~~n~KA~ 493 (604)
....+.|+++.|.+.-.+. + +...|..+|...+..|+++-|+..|.++=.. -.. +...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg---~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----N-----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG---DVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT---CHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC---CHHHH
Confidence 4556889999998886543 3 5789999999999999999999988876222 122 45566
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 046116 494 WRRSQAYDMMGLAKESLMD 512 (604)
Q Consensus 494 ~rrG~a~~~LGd~dEAL~d 512 (604)
-.++..-...|++.-|...
T Consensus 80 ~kla~iA~~~g~~n~af~~ 98 (177)
T 3mkq_B 80 SKMQNIAQTREDFGSMLLN 98 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCccHHHHHHH
Confidence 6777777777777766544
No 321
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.93 E-value=54 Score=29.84 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=35.0
Q ss_pred CcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhh
Q 046116 108 QNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLAS 168 (604)
Q Consensus 108 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 168 (604)
.+-.+=..|+..+|..-- ..++|+|+++|... .|.-++.|+++||.+..
T Consensus 31 ~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC
Confidence 344455667777775421 36789999999876 66668889999998875
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.39 E-value=2.1e+02 Score=33.53 Aligned_cols=91 Identities=13% Similarity=-0.060 Sum_probs=66.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCC-------------
Q 046116 420 QGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALS-LSKT------------- 485 (604)
Q Consensus 420 ~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe-LdPd------------- 485 (604)
....+...|.|+-|. +.+..+|+ ++..-+-+|.+|+..|++++|...+.+|-. +.++
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence 456677788776543 35567777 566667799999999999999999988642 1111
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046116 486 ------MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGS 519 (604)
Q Consensus 486 ------~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl 519 (604)
...+..-|++....+...+-++-++.-.+.||..
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0112335667788899999999999999999986
No 323
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.72 E-value=57 Score=29.66 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=8.5
Q ss_pred ccCCCchhhhHHHHH
Q 046116 31 MNEQPPSLRRAKVAQ 45 (604)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (604)
++.+||..|+.-+..
T Consensus 28 L~~~~~~vR~~A~~~ 42 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYA 42 (211)
T ss_dssp TTCSSHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH
Confidence 455666666654443
No 324
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=26.72 E-value=1.1e+02 Score=25.38 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+..+|.-....|+|++|+..|..+++.+..
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3566677778889999999999999987554
No 325
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.10 E-value=1.1e+02 Score=25.62 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+.++|.-....|+|++|+..|..+++.+..
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3555666667778889999888888887544
No 326
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.03 E-value=29 Score=29.68 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhh
Q 046116 107 DQNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHL 166 (604)
Q Consensus 107 ~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~ 166 (604)
|.|-.|=..|+..+|... ...++|+|+++|...-.|| ++.|++||+-+
T Consensus 84 d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~v-r~~A~~aL~~i 131 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFA-RKVAVNYLETH 131 (131)
T ss_dssp HCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHH-HHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHH-HHHHHHHHHhC
Confidence 455567778888888754 1246899999998877776 57788999853
No 327
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.47 E-value=1.3e+02 Score=31.95 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=29.7
Q ss_pred ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 449 RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 449 ~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
+.....++..+|.+|+-+++|++|+..++++|..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3346788899999999999999999999999964
No 328
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=25.14 E-value=1.1e+02 Score=32.65 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 046116 450 KERIVLYSNRAQCYLMLKKPEAAISDTTRALS 481 (604)
Q Consensus 450 ~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALe 481 (604)
.....++..+|.+|+-+++|++|+..+++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34778999999999999999999999999985
No 329
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.78 E-value=6.2e+02 Score=26.53 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 411 ELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDL---CPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 411 ~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel---~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
...++.+..+...++..+||..|-..++++-.. .+. .......++...+..+...++|.+|-.+|..++.-
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345778888999999999999999999997431 222 23456778888899999999999999999988753
No 330
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=24.17 E-value=87 Score=34.44 Aligned_cols=31 Identities=16% Similarity=-0.035 Sum_probs=21.3
Q ss_pred CCcHHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116 138 GVVLPLMELLRGKISWVEERVAVRALGHLASH 169 (604)
Q Consensus 138 ~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 169 (604)
.++++|..+|...=. -=+.+|+++|+.++..
T Consensus 313 ~a~~~L~~~L~~~d~-~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 313 LAINILGRFLLNNDK-NIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHHHHHHHHTCSST-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-chHHHHHHHHHHHHhh
Confidence 356777777775444 2367888888888865
No 331
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.13 E-value=76 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046116 414 VFMLKQQGNQEFWAGYIEEAVKKYSKALDL 443 (604)
Q Consensus 414 A~~lk~~GN~lfk~GdyeeAIe~YtkALel 443 (604)
.......|..+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455667778888888999999999988874
No 332
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.38 E-value=86 Score=34.64 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 413 SVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPL--KMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 413 ~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~--~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.+..+.-.-..|...+.|+.|....+++. .|. ......+..++..|.++.-.++|.+|..++..|++..|.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 35556666677788889999999999885 443 123345777888899999999999999999999988776
No 333
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=23.23 E-value=2.6e+02 Score=26.19 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=49.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 046116 426 WAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYL-MLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMG 504 (604)
Q Consensus 426 k~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~yl-kLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LG 504 (604)
.-|+...-+.+|-+. +-. .=|.++|.-++ ..|+-++--.-....+.-++. ++..++.+|.+|.++|
T Consensus 73 ~C~NlKrVi~C~~~~---n~~-------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~---~~~~l~kia~Ay~Klg 139 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN---NTL-------NEHVNKALDILVIQGKRDKLEEIGREILKNNEV---SASILVAIANALRRVG 139 (172)
T ss_dssp GCSCTHHHHHHHHHT---TCC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCS---CHHHHHHHHHHHHHTT
T ss_pred hhhcHHHHHHHHHHh---cch-------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCC---ChHHHHHHHHHHHHhc
Confidence 345555666665332 111 23555665444 344433333333333454555 7999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 046116 505 LAKESLMDALTFIGS 519 (604)
Q Consensus 505 d~dEAL~d~~kALkl 519 (604)
+..+|-..+.+|-+.
T Consensus 140 ~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 140 DERDATTLLIEACKK 154 (172)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHh
Confidence 999999888888765
No 334
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.98 E-value=1.9e+02 Score=32.35 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 046116 454 VLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMSSHSKSLWRRSQAYDMMGLAKES 509 (604)
Q Consensus 454 ~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~~n~KA~~rrG~a~~~LGd~dEA 509 (604)
.....+|...+..|+|.-|..-++.++..+|+ |.+|..-++.+|.++|.-.++
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~---~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPD---NRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHhccC
Confidence 44566888999999999999999999999999 999999999999999966554
No 335
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.62 E-value=1.2e+02 Score=24.72 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 492 SLWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 492 A~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
.+..+|.-....|+|++|+..|..+++.+..
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3555566667778999999999999887543
No 336
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.98 E-value=74 Score=28.64 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=35.3
Q ss_pred CcccchhhhhhhhhhhccchHHHHHHHHhcCCcHHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 046116 108 QNIYIPYYAAHIIGSYTMNKAHFAEKAVKSGVVLPLMELLRGKISWVEERVAVRALGHLASH 169 (604)
Q Consensus 108 ~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 169 (604)
.|-.+=..|+..+|.+. ...++|+|+++|... .|--++.|+++||.+.+.
T Consensus 26 ~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhCCH
Confidence 33444467777777532 136799999999766 555688899999998753
No 337
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.93 E-value=1.5e+02 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 046116 449 RKERIVLYSNRAQCYLMLKKPEAAISDTTRALSL 482 (604)
Q Consensus 449 ~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeL 482 (604)
+.....++..+|.+|+-.++|++|+..++++|..
T Consensus 178 r~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 178 RATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447788999999999999999999999999964
No 338
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=21.35 E-value=2.3e+02 Score=27.79 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=65.8
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKALDLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKTMS 487 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkALel~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd~~ 487 (604)
.++....+............ +-..|++.|..|+.-.|.+. ...+-..+..+....+|-.-.|..|..+...||.
T Consensus 87 ~ErqqL~etH~~RV~a~Ln~-rrr~Ale~y~~ALq~~pP~~---~~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe-- 160 (219)
T 3pmr_A 87 GERQRLVETHATRVIALIND-QRRAALEGFLAALQADPPQA---ERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPE-- 160 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSSCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHH--
Confidence 34444455555555555443 46789999999999887721 1222222333333445666788999999999987
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 488 SHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 488 ~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+|---+.+++-.|...++-+..-...|...|
T Consensus 161 ---~A~~~k~~vl~hL~~Id~r~NqSL~lL~~~P 191 (219)
T 3pmr_A 161 ---KAQQMRFQVHTHLQVIEERVNQSLGLLDQNP 191 (219)
T ss_dssp ---HHTTTHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred ---HHhhcchHHHHHHHHHHHHHhhhHHHHHcCc
Confidence 5555577777777777776666555555533
No 339
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.57 E-value=1.5e+02 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhchhh
Q 046116 493 LWRRSQAYDMMGLAKESLMDALTFIGSRMK 522 (604)
Q Consensus 493 ~~rrG~a~~~LGd~dEAL~d~~kALkl~~~ 522 (604)
+..+|.-....|+|++|+..|..+++++..
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445555566778999999999999887554
No 340
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=20.12 E-value=4.1e+02 Score=26.37 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCcccchHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 046116 408 KENELSVFMLKQQGNQEFWAGYIEEAVKKYSKAL--DLCPLKMRKERIVLYSNRAQCYLMLKKPEAAISDTTRALSLSKT 485 (604)
Q Consensus 408 ee~~~~A~~lk~~GN~lfk~GdyeeAIe~YtkAL--el~P~~~~~~~a~l~~NRA~~ylkLgdy~eAI~D~~rALeLdPd 485 (604)
.++................. +-..|++.|..|| ...|.+ ....+-..+..+....++-.-.|..|..+...||.
T Consensus 82 ~ErqqL~etH~qRV~a~LNe-rrr~Ale~y~~AL~~q~~pP~---~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe 157 (239)
T 3k66_A 82 RMRKEIEAVHEERVQAMLNE-KKRDATHDYRQALATHVNKPN---KHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSK 157 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHH
Confidence 34444455555555554433 4688999999999 455551 11233333344444445667789999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhchh
Q 046116 486 MSSHSKSLWRRSQAYDMMGLAKESLMDALTFIGSRM 521 (604)
Q Consensus 486 ~~~n~KA~~rrG~a~~~LGd~dEAL~d~~kALkl~~ 521 (604)
+|-.-+.+++-.|...++-+..-...|...|
T Consensus 158 -----~A~~~k~~vl~hL~~Id~r~NqSL~lL~~~P 188 (239)
T 3k66_A 158 -----EAAAYKPTVIHRLRYIDLRINGTLAMLRDFP 188 (239)
T ss_dssp -----HHHTTHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred -----HHHHhhHHHHHHHHHHHHHHhhhHHHHHcCc
Confidence 6666677777777777776665544444444
Done!