BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046118
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 110/190 (57%), Gaps = 5/190 (2%)
Query: 25 EPLLDVCSNTVKPDCQYYLVSAIPXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGIKLTL 84
+PLLD+ N V+ YYLVS I CPLDVIQLS D +G +L
Sbjct: 1 DPLLDINGNVVEASRDYYLVSVIGGAGGGGLTLYRGRNELCPLDVIQLSPDLHKGTRLRF 60
Query: 85 SPYDNSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXXXXXVGHPGA 144
+ Y+N++II E+ DLN+ F S CNE +W+VDNYD S G+PGA
Sbjct: 61 AAYNNTSIIHEAVDLNVKFSTETS----CNEPTVWRVDNYDPSRGKWFITTGGVEGNPGA 116
Query: 145 ETLLNWFKLEIFGTLPSSYKIVHCPSFCESCVKLCSNVGISYKDGIRCLALALYDKPSFS 204
+TL NWFKLE GT +Y+IVHCPS C+SCV LC++VG+SY D R LAL ++ F
Sbjct: 117 QTLKNWFKLERVGTDQGTYEIVHCPSVCKSCVFLCNDVGVSY-DYRRRLALTAGNERVFG 175
Query: 205 VALIPGTERS 214
V ++P E S
Sbjct: 176 VVIVPANEGS 185
>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
Length = 184
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 24 PEPLLDVCSNTVKPDCQYYLVSAI-PXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGIKL 82
P+P++D+ V Y++VSAI CPL V+Q D+G I
Sbjct: 3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFDNGEPIIF 62
Query: 83 TLSPYDNSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXXXXXVGHP 142
+ I+RES DLN+ F + ++ CNE WKVD + + G+
Sbjct: 63 SAIKNVKDNIVRESVDLNVKFNITIN----CNETTAWKVDRFP-GVIGWTVTLGGEKGYH 117
Query: 143 GAETLLNWFKLEIFGTLPSSYKIVHCPSFCESCVKLCSNVGISY-KDGIRCLALA 196
G E+ + FK++ G LP SYK CPS+ + + C+NV I + K IR L L
Sbjct: 118 GFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILT 171
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 22 SIPEPLLDVCSNTVKPDCQYYLVSAIPXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGIK 81
S E + D+ V +YY+VSAI CP+ +IQ SD G+
Sbjct: 1 SDAEKVYDIEGYPVFLGSEYYIVSAIIGAGGGGVRPGRTRGSMCPMSIIQEQSDLQMGLP 60
Query: 82 LTL-SPYDNSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKV--DNYDVSLXXXXXXXXXX 138
+ SP + I T+L + F C E W + D+ + +
Sbjct: 61 VRFSSPEEKQGKIYTDTELEIEFVEKPD----CAESSKWVIVKDSGEARVAIGGSED--- 113
Query: 139 VGHPGAETLLNWFKLEIFGTLPSSYKIVHCPSFCESCVKLCSNVGISYKDGIRCLALALY 198
HP E + +FK+E G+L +YK+V CP +S CS++GI+Y +G R L L
Sbjct: 114 --HPQGELVRGFFKIEKLGSL--AYKLVFCP---KSDSGSCSDIGINY-EGRRSLVLKSS 165
Query: 199 DKPSFSVALI 208
D F V +
Sbjct: 166 DDVPFRVVFV 175
>pdb|3TC2|A Chain A, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|B Chain B, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|C Chain C, Crystal Structure Of Potato Serine Protease Inhibitor
Length = 187
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 26 PLLDVCSNTVKPDCQYYLVSAI--PXXXXXXXXXXXXXXXFCPLDVIQLSSD---SGRGI 80
P+LDV + P Y ++S C V + +SD SG +
Sbjct: 7 PVLDVTGKELDPRLSYRIISTFWGALGGDVYLGKSPNSDAPCANGVFRYNSDVGPSGTPV 66
Query: 81 KLTLSPYDNSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXXXXXVG 140
+ S I E LN+ F + S + C +WKV +YD SL +G
Sbjct: 67 RFIGSSSHFGQGIFEDELLNIQFAI--STSKMCVSYTIWKVGDYDASLGTMLLETGGTIG 124
Query: 141 HPGAETLLNWFKLEIFGTLPSSYKIVHCPSFCESCVKLCSNVGISYKDGIRCLALALYDK 200
+ +WFK I + Y +++CP S + C VG+ +++G R LAL + D
Sbjct: 125 QADS----SWFK--IVKSSQFGYNLLYCPVTTSSDDQFCLKVGVVHQNGKRRLAL-VKDN 177
Query: 201 P 201
P
Sbjct: 178 P 178
>pdb|2QN4|A Chain A, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
pdb|2QN4|B Chain B, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
Length = 200
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 24/177 (13%)
Query: 21 TSIPEPLLDVCSNTVKPDCQYYLVSAIPXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGI 80
++ P P+ D + + D YY++ A P CPL V Q + + +G
Sbjct: 21 SAAPPPVYDTEGHELSADGSYYVLPASPGHGGGLTMAPRVLP--CPLLVAQETDERRKGF 78
Query: 81 KLTLSPYDNST-----IIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXX 135
+ +P+ + IR STD+ + F + C + W V D L
Sbjct: 79 PVRFTPWGGAAAPEDRTIRVSTDVRIRF----NAATICVQSTEWHVG--DEPLTGARRVV 132
Query: 136 XXXVGHPGAETLLNWFKLEIFGTLPSSYKIVHCPSFCESCVKLCSNVGISYKDGIRC 192
+ P N F++E +G YK+V SC C ++G+S +DG R
Sbjct: 133 TGPLIGPSPSGRENAFRVEKYG---GGYKLV-------SCRDSCQDLGVS-RDGARA 178
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 24 PEPLLDVCSNTVKPDCQYYLVSAIPXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGIKLT 83
P P+ D + ++ D YY++SA CPL V Q + G +
Sbjct: 3 PPPVHDTDGHELRADANYYVLSAN-RAHGGGLTMAPGHGRHCPLFVSQDPNGQHDGFPVR 61
Query: 84 LSPYD---NSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXXXXXVG 140
++PY + IIR STD+ + F + C + W +D+ + V
Sbjct: 62 ITPYGVAPSDKIIRLSTDVRISFRAYTT----CLQSTEWHIDSELAA--GRRHVITGPVK 115
Query: 141 HPGAETLLNWFKLEIF-GTLPSSYKIVHCPSFCE 173
P N F++E + G YK++ C +C+
Sbjct: 116 DPSPSGRENAFRIEKYSGAEVHEYKLMSCGDWCQ 149
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 189
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 24 PEPLLDVCSNTVKPDCQYYLVSAIPXXXXXXXXXXXXXXXFCPLDVIQLSSDSGRGIKLT 83
P P+ D + ++ D YY++SA CPL V Q + G +
Sbjct: 11 PPPVHDTDGHELRADANYYVLSAN-RAHGGGLTMAPGHGRHCPLFVSQDPNGQHDGFPVR 69
Query: 84 LSPYD---NSTIIRESTDLNLIFPVLLSGHEYCNEQPLWKVDNYDVSLXXXXXXXXXXVG 140
++PY + IIR STD+ + F + C + W +D+ + V
Sbjct: 70 ITPYGVAPSDKIIRLSTDVRISFRAYTT----CLQSTEWHIDSELAA--GRRHVITGPVK 123
Query: 141 HPGAETLLNWFKLEIF-GTLPSSYKIVHCPSFCE 173
P N F++E + G YK++ +C+
Sbjct: 124 DPSPSGRENAFRIEKYSGAEVHEYKLMSSGDWCQ 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,884,243
Number of Sequences: 62578
Number of extensions: 206040
Number of successful extensions: 347
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 7
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)