BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046120
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 111/287 (38%), Gaps = 23/287 (8%)
Query: 6 ETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSF-CHNCFRKTMHXX 64
E V V EG+GRGL +T+ A ++ + YSA+ F + +F CH CF++
Sbjct: 7 ENVEVFTSEGKGRGLKATKEFWAADVIFAERA---YSAVVFDSLINFVCHTCFKRQ-EKL 62
Query: 65 XXXXXXXXVAFCSPKCSTAAASSSHSPYVCQALTR---LLNLNSPDAANLPLDRQLQARF 121
+C C A + + C A+ + + N N AA + + +
Sbjct: 63 HRCGQCKFAHYCDRTCQKDAWLNHKNE--CAAIKKYGKVPNENIRLAARIMWRVEREGTG 120
Query: 122 LIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRL 181
L L V+ Q + + + +L P +++ + +
Sbjct: 121 LTEGC-LVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINC 179
Query: 182 NAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNAC------RFDYVDAAAENNTD 235
N F L + Q G ++V GI+ NHDC PN + V +
Sbjct: 180 NGFTLSD-----QRGLQAV-GVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMR 233
Query: 236 IIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCK 282
I +R + + +G E+ +SY + R+++L Y F C C+ C+
Sbjct: 234 IELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQ 280
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 106/287 (36%), Gaps = 49/287 (17%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 14 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLLGK-EKLMRCSQCRVAKY 70
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQL---------QARFLIAAY 126
CS KC A C+ L PD+ L L R + ++ L + Y
Sbjct: 71 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRL-LGRVVFKLMDGAPSESEKLYSFY 127
Query: 127 NLAVVNPSQF---------QILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLA 177
+L N ++ Q+++ FQ + + A+ PPA E A ++
Sbjct: 128 DLES-NINKLTEDRKEGLRQLVMTFQHFMREEIQDASQL------PPAFDLFEAFAKVIC 180
Query: 178 KDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDII 237
N+F + ++ G+Y S NH C PN + N ++
Sbjct: 181 ----NSFTICNAEMQEV-------GVGLYPSISLLNHSCDPNC-------SIVFNGPHLL 222
Query: 238 VRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+R + D+ G E+ + Y + R+K+L Y F CDC RC+ +
Sbjct: 223 LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ 269
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 102/285 (35%), Gaps = 45/285 (15%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 16 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLLGK-EKLMRCSQCRVAKY 72
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANL------------PLDRQLQARFLI 123
CS KC A C+ L PD+ L P + + F
Sbjct: 73 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD 130
Query: 124 AAYNLAVVNPSQ----FQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKD 179
N+ + + Q+++ FQ + + A+ PPA E A ++
Sbjct: 131 LESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQL------PPAFDLFEAFAKVIC-- 182
Query: 180 RLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVR 239
N+F + ++ G+Y S NH C PN C + N +++R
Sbjct: 183 --NSFTICNAEMQEV-------GVGLYPSISLLNHSCDPN-CSIVF------NGPHLLLR 226
Query: 240 MIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+ D+ G E+ + Y + R+K+L Y F CDC RC+ +
Sbjct: 227 AVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ 271
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 102/285 (35%), Gaps = 45/285 (15%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 50 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLLGK-EKLMRCSQCRVAKY 106
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANL------------PLDRQLQARFLI 123
CS KC A C+ L PD+ L P + + F
Sbjct: 107 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD 164
Query: 124 AAYNLAVVNPSQ----FQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKD 179
N+ + + Q+++ FQ + + A+ PPA E A ++
Sbjct: 165 LESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQL------PPAFDLFEAFAKVIC-- 216
Query: 180 RLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVR 239
N+F + ++ G+Y S NH C PN C + N +++R
Sbjct: 217 --NSFTICNAEMQEV-------GVGLYPSISLLNHSCDPN-CSIVF------NGPHLLLR 260
Query: 240 MIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+ D+ G E+ + Y + R+K+L Y F CDC RC+ +
Sbjct: 261 AVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ 305
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 45/285 (15%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 15 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLLGK-EKLMRCSQCRVAKY 71
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANL------------PLDRQLQARFLI 123
CS KC A C+ L PD+ L P + + F
Sbjct: 72 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD 129
Query: 124 AAYNLAVVNPSQ----FQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKD 179
N+ + + Q+++ FQ + + A+ PPA E A ++
Sbjct: 130 LESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQL------PPAFDLFEAFAKVIC-- 181
Query: 180 RLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVR 239
N+F + ++ G+Y S NH C PN + N +++R
Sbjct: 182 --NSFTICNAEMQEV-------GVGLYPSISLLNHSCDPNC-------SIVFNGPHLLLR 225
Query: 240 MIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+ D+ G E+ + Y + R+K+L Y F CDC RC+ +
Sbjct: 226 AVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ 270
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 106/287 (36%), Gaps = 49/287 (17%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 14 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLLGK-EKLMRCSQCRVAKY 70
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQL---------QARFLIAAY 126
CS KC A C+ L PD+ L L R + ++ L + Y
Sbjct: 71 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRL-LGRVVFKLMDGAPSESEKLYSFY 127
Query: 127 NLAVVNPSQF---------QILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLA 177
+L N ++ Q+++ FQ + + A+ PPA E A ++
Sbjct: 128 DLES-NINKLTEDRKEGLRQLVMTFQHFMREEIQDASQL------PPAFDLFEAFAKVIC 180
Query: 178 KDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDII 237
N+F + ++ G+Y S NH C PN + N ++
Sbjct: 181 ----NSFTICNAEMQEV-------GVGLYPSISLLNHSCDPNC-------SIVFNGPHLL 222
Query: 238 VRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+R + D+ G E+ + Y + R+K+L Y F CDC RC+ +
Sbjct: 223 LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQ 269
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 100/285 (35%), Gaps = 45/285 (15%)
Query: 16 RGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHXXXXXXXXXXVAF 75
RG GL + L+ G+++ R P L Y+ + C C +
Sbjct: 15 RGNGLRAVTPLRPGELLFRSDP-LAYTVCKG-SRGVVCDRCLL-GKEKLXRCSQCRVAKY 71
Query: 76 CSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANL------------PLDRQLQARFLI 123
CS KC A C+ L PD+ L P + + F
Sbjct: 72 CSAKCQKKAWPDHKRE--CKCLKSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD 129
Query: 124 AAYNLAVVNPSQ----FQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKD 179
N+ + + Q++ FQ + A+ PPA E A ++
Sbjct: 130 LESNINKLTEDRKEGLRQLVXTFQHFXREEIQDASQL------PPAFDLFEAFAKVIC-- 181
Query: 180 RLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVR 239
N+F + E Q+ G+Y S NH C PN + N +++R
Sbjct: 182 --NSFTICNA--EXQEV-----GVGLYPSISLLNHSCDPNC-------SIVFNGPHLLLR 225
Query: 240 MIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVE 284
+ D+ G E+ + Y R+K+L Y F CDC RC+ +
Sbjct: 226 AVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRCQTQ 270
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 194 QDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLS 253
+D S I+ + NH C PN Y AE VR + ++ G E+ S
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVI-VTYKGTLAE------VRAVQEIKPGEEVFTS 239
Query: 254 YFPVNYDYSTRQKRLLYDYDFACDCDRC 281
Y + Y R RL Y F C+C C
Sbjct: 240 YIDLLYPTEDRNDRLRDSYFFTCECQEC 267
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 194 QDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLS 253
+D S I+ + NH C PN Y AE VR + ++ G E+ S
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVI-VTYKGTLAE------VRAVQEIKPGEEVFTS 239
Query: 254 YFPVNYDYSTRQKRLLYDYDFACDCDRC 281
Y + Y R RL Y F C+C C
Sbjct: 240 YIDLLYPTEDRNDRLRDSYFFTCECQEC 267
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 194 QDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLS 253
+D S I+ + NH C PN Y AE VR + ++ G E+ S
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVI-VTYKGTLAE------VRAVQEIKPGEEVFTS 239
Query: 254 YFPVNYDYSTRQKRLLYDYDFACDCDRC 281
Y + Y R RL Y F C+C C
Sbjct: 240 YIDLLYPTEDRNDRLRDSYFFTCECQEC 267
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 20/138 (14%)
Query: 146 VTDNDTSAAH--YLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAY 203
+ +D +A H Y L P S+ + L A+ N F + +D S
Sbjct: 148 LIQSDIAALHQFYSKYLEFPDHSSLV----VLFAQVNCNGFTI-------EDEELSHLGS 196
Query: 204 GIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYST 263
I+ + NH C PN Y AE VR + ++ G E+ SY + Y
Sbjct: 197 AIFPDVALMNHSCCPNVI-VTYKGTLAE------VRAVQEIHPGDEVFTSYIDLLYPTED 249
Query: 264 RQKRLLYDYDFACDCDRC 281
R RL Y F C+C C
Sbjct: 250 RNDRLRDSYFFTCECREC 267
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 175 LLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKA--SFFNHDCLPNACRFDYV-DAAAE 231
L A D+ + ++P + GQ + G Y+ F NH C PN F V D A +
Sbjct: 189 LFALDKFSDPDSLDPLLAGQ----PLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADK 244
Query: 232 NNTDIIVRMIHDVPQGREICLSY 254
+ D+ + I D+P+G E+ Y
Sbjct: 245 HIHDLALFAIKDIPKGTELTFDY 267
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 209 ASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSY 254
A+F NHDC PN C+F D A V+++ D+ G E+ Y
Sbjct: 177 AAFINHDCKPN-CKFVPADGNA-----ACVKVLRDIEPGDEVTCFY 216
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 208 KASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNY 259
K+ CL N D+ + N+ +IV +V +G+ C+ Y+P Y
Sbjct: 325 KSYIATQGCLQNTVN-DFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEY 375
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 208 KASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNY 259
K+ CL N D+ + N+ +IV +V +G+ C+ Y+P Y
Sbjct: 112 KSYIATQGCLQNTVN-DFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEY 162
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 208 KASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNY 259
K+ CL N D+ + N+ +IV +V +G+ C+ Y+P Y
Sbjct: 65 KSYIATQGCLQNTVN-DFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEY 115
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 209 ASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSY 254
A+F NHDC PN C+F + V+ + D+ G EI Y
Sbjct: 206 AAFINHDCRPN-CKF-----VSTGRDTACVKALRDIEPGEEISCYY 245
>pdb|2L9W|A Chain A, Solution Structure Of The C-Terminal Domain Of Prp24
Length = 117
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 93 VCQALTRLLNLNSPDAANLPLDRQLQARFLI------AAYNLAVVNPSQFQILLAFQGTV 146
+CQ L +++N D + L +I AA L ++N SQFQ + GT+
Sbjct: 38 ICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97
Query: 147 TD 148
D
Sbjct: 98 ND 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,050,933
Number of Sequences: 62578
Number of extensions: 363142
Number of successful extensions: 709
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 24
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)