Query 046123
Match_columns 108
No_of_seqs 115 out of 1779
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.2 1.3E-11 2.9E-16 96.8 6.4 69 38-106 192-261 (968)
2 PLN00113 leucine-rich repeat r 99.2 1.9E-11 4.2E-16 95.9 6.6 99 2-108 140-239 (968)
3 KOG0617 Ras suppressor protein 99.1 2.5E-12 5.5E-17 83.6 -2.9 95 2-106 56-151 (264)
4 PLN03150 hypothetical protein; 99.0 4.6E-10 1E-14 85.2 5.9 92 4-103 420-512 (623)
5 KOG0617 Ras suppressor protein 98.9 3E-11 6.4E-16 78.7 -2.9 92 3-104 34-126 (264)
6 PF13855 LRR_8: Leucine rich r 98.9 3.4E-09 7.3E-14 57.4 5.1 54 38-92 5-60 (61)
7 PLN03210 Resistant to P. syrin 98.8 1.5E-08 3.2E-13 81.6 8.4 61 38-99 661-722 (1153)
8 PLN03210 Resistant to P. syrin 98.8 1.6E-08 3.5E-13 81.3 8.0 90 2-101 611-701 (1153)
9 PF13855 LRR_8: Leucine rich r 98.8 6.6E-09 1.4E-13 56.2 4.1 58 2-68 1-60 (61)
10 KOG0444 Cytoskeletal regulator 98.8 5.8E-10 1.3E-14 84.4 -0.5 82 2-93 103-185 (1255)
11 KOG4658 Apoptotic ATPase [Sign 98.7 6.1E-09 1.3E-13 81.7 2.4 82 1-90 570-651 (889)
12 PLN03150 hypothetical protein; 98.7 5E-08 1.1E-12 74.3 6.8 90 1-98 441-532 (623)
13 KOG0472 Leucine-rich repeat pr 98.7 2.4E-09 5.1E-14 77.3 -0.6 83 2-94 435-541 (565)
14 KOG0472 Leucine-rich repeat pr 98.6 2E-09 4.3E-14 77.7 -2.2 90 3-104 207-297 (565)
15 PF14580 LRR_9: Leucine-rich r 98.6 7.4E-08 1.6E-12 62.7 4.7 79 3-92 43-124 (175)
16 KOG4194 Membrane glycoprotein 98.6 3.9E-09 8.4E-14 79.2 -2.4 40 2-50 293-333 (873)
17 PF14580 LRR_9: Leucine-rich r 98.6 6.3E-08 1.4E-12 63.1 3.3 82 3-97 20-103 (175)
18 KOG0444 Cytoskeletal regulator 98.5 3.8E-09 8.3E-14 80.1 -2.8 96 2-107 222-318 (1255)
19 KOG4194 Membrane glycoprotein 98.5 7E-08 1.5E-12 72.6 2.1 95 2-107 149-247 (873)
20 KOG4658 Apoptotic ATPase [Sign 98.4 6.9E-08 1.5E-12 75.9 1.7 97 3-108 546-645 (889)
21 PRK15387 E3 ubiquitin-protein 98.3 5.1E-07 1.1E-11 70.2 3.0 60 38-101 406-465 (788)
22 KOG0618 Serine/threonine phosp 98.3 8.8E-08 1.9E-12 74.7 -1.3 80 2-92 383-463 (1081)
23 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 44.6 3.2 35 38-73 5-39 (44)
24 KOG0618 Serine/threonine phosp 98.2 1.5E-07 3.2E-12 73.5 -0.7 89 3-102 46-134 (1081)
25 KOG4237 Extracellular matrix p 98.2 5.3E-08 1.2E-12 70.1 -3.3 68 38-106 71-141 (498)
26 PF12799 LRR_4: Leucine Rich r 98.2 3E-06 6.6E-11 43.0 3.6 32 58-90 2-33 (44)
27 KOG0532 Leucine-rich repeat (L 98.2 1.7E-07 3.7E-12 70.1 -1.6 92 4-107 145-236 (722)
28 PRK15370 E3 ubiquitin-protein 98.0 1.6E-05 3.5E-10 61.9 6.4 49 38-91 245-293 (754)
29 KOG4237 Extracellular matrix p 98.0 2.7E-06 5.9E-11 61.5 1.8 83 1-92 273-357 (498)
30 PRK15370 E3 ubiquitin-protein 98.0 2.2E-05 4.8E-10 61.2 6.7 82 3-101 200-281 (754)
31 COG4886 Leucine-rich repeat (L 98.0 3.6E-06 7.8E-11 60.5 1.8 86 3-99 117-203 (394)
32 KOG4579 Leucine-rich repeat (L 97.9 2.5E-07 5.5E-12 58.3 -3.9 61 38-100 57-118 (177)
33 COG4886 Leucine-rich repeat (L 97.9 2.5E-06 5.3E-11 61.3 0.4 79 3-91 141-219 (394)
34 PRK15387 E3 ubiquitin-protein 97.9 3.1E-05 6.8E-10 60.5 6.2 16 3-19 243-258 (788)
35 KOG1259 Nischarin, modulator o 97.9 2.5E-06 5.5E-11 60.2 0.2 91 3-105 285-399 (490)
36 cd00116 LRR_RI Leucine-rich re 97.9 3.5E-06 7.6E-11 58.4 0.7 55 38-92 141-204 (319)
37 KOG0532 Leucine-rich repeat (L 97.9 3.2E-07 7E-12 68.7 -5.0 52 38-90 147-198 (722)
38 cd00116 LRR_RI Leucine-rich re 97.8 7.3E-06 1.6E-10 56.8 1.3 84 2-94 137-234 (319)
39 KOG4579 Leucine-rich repeat (L 97.7 3.3E-06 7.2E-11 53.3 -2.2 78 4-91 55-133 (177)
40 KOG1259 Nischarin, modulator o 97.5 3.7E-05 8E-10 54.4 1.1 73 23-106 281-356 (490)
41 PRK15386 type III secretion pr 97.5 0.00021 4.5E-09 52.4 4.4 12 82-93 157-168 (426)
42 KOG0531 Protein phosphatase 1, 97.3 0.00012 2.6E-09 53.3 1.9 79 2-92 95-173 (414)
43 KOG1859 Leucine-rich repeat pr 97.3 1.5E-05 3.2E-10 61.7 -3.0 77 2-91 187-264 (1096)
44 PRK15386 type III secretion pr 97.2 0.00053 1.2E-08 50.3 4.0 82 2-103 52-136 (426)
45 KOG3665 ZYG-1-like serine/thre 97.1 0.00022 4.7E-09 55.4 1.2 80 1-91 147-230 (699)
46 PF00560 LRR_1: Leucine Rich R 97.0 0.00047 1E-08 29.6 1.5 17 38-54 4-20 (22)
47 KOG3207 Beta-tubulin folding c 96.9 0.00037 8E-09 51.2 1.1 84 1-93 221-313 (505)
48 KOG0531 Protein phosphatase 1, 96.6 0.00084 1.8E-08 49.0 1.1 82 5-98 75-156 (414)
49 KOG1644 U2-associated snRNP A' 96.5 0.0073 1.6E-07 40.6 5.1 78 4-92 44-124 (233)
50 PF00560 LRR_1: Leucine Rich R 96.5 0.0018 3.8E-08 27.8 1.4 20 83-103 2-21 (22)
51 KOG1644 U2-associated snRNP A' 96.4 0.0069 1.5E-07 40.7 4.1 79 2-90 64-149 (233)
52 KOG3207 Beta-tubulin folding c 96.3 0.0013 2.8E-08 48.4 0.4 14 80-93 245-258 (505)
53 PF13306 LRR_5: Leucine rich r 95.4 0.084 1.8E-06 31.7 5.9 49 38-89 39-89 (129)
54 KOG2739 Leucine-rich acidic nu 95.3 0.01 2.2E-07 41.0 1.5 53 38-92 69-127 (260)
55 KOG1859 Leucine-rich repeat pr 95.1 0.0017 3.8E-08 50.8 -2.8 72 8-91 170-242 (1096)
56 KOG3665 ZYG-1-like serine/thre 95.0 0.023 4.9E-07 44.5 3.0 82 1-92 172-261 (699)
57 KOG2739 Leucine-rich acidic nu 95.0 0.019 4.1E-07 39.6 2.3 15 53-67 61-75 (260)
58 PF13306 LRR_5: Leucine rich r 94.8 0.23 5E-06 29.7 6.6 90 3-108 36-129 (129)
59 KOG2123 Uncharacterized conser 94.3 0.0021 4.6E-08 45.2 -3.7 65 23-97 38-104 (388)
60 KOG2123 Uncharacterized conser 94.1 0.0021 4.5E-08 45.2 -4.0 77 1-87 40-123 (388)
61 PF13504 LRR_7: Leucine rich r 93.6 0.064 1.4E-06 21.4 1.5 10 38-47 5-14 (17)
62 KOG2120 SCF ubiquitin ligase, 93.4 0.011 2.4E-07 42.1 -1.6 39 54-92 310-349 (419)
63 smart00369 LRR_TYP Leucine-ric 92.8 0.1 2.2E-06 22.8 1.7 15 38-52 6-20 (26)
64 smart00370 LRR Leucine-rich re 92.8 0.1 2.2E-06 22.8 1.7 15 38-52 6-20 (26)
65 KOG0473 Leucine-rich repeat pr 92.4 0.0023 4.9E-08 44.0 -5.8 62 38-101 46-107 (326)
66 KOG2982 Uncharacterized conser 92.4 0.039 8.4E-07 39.4 0.1 30 38-67 75-107 (418)
67 KOG1909 Ran GTPase-activating 92.2 0.097 2.1E-06 37.8 1.9 41 53-93 209-253 (382)
68 KOG0473 Leucine-rich repeat pr 91.4 0.0027 5.9E-08 43.7 -6.3 79 5-93 45-123 (326)
69 KOG2120 SCF ubiquitin ligase, 88.5 0.016 3.4E-07 41.4 -4.6 81 4-93 187-272 (419)
70 KOG3864 Uncharacterized conser 85.8 0.16 3.5E-06 34.2 -0.8 59 38-96 105-166 (221)
71 smart00367 LRR_CC Leucine-rich 85.7 0.69 1.5E-05 20.1 1.5 17 1-17 1-17 (26)
72 KOG1909 Ran GTPase-activating 85.6 0.41 8.8E-06 34.7 1.1 58 38-95 161-227 (382)
73 KOG1947 Leucine rich repeat pr 83.0 0.75 1.6E-05 33.5 1.6 57 38-94 247-308 (482)
74 KOG2982 Uncharacterized conser 82.8 1.3 2.9E-05 31.9 2.6 79 4-91 73-156 (418)
75 smart00364 LRR_BAC Leucine-ric 81.5 1 2.2E-05 20.1 1.1 14 38-51 6-19 (26)
76 KOG3864 Uncharacterized conser 81.2 0.14 3.1E-06 34.4 -2.4 36 55-90 149-185 (221)
77 COG5238 RNA1 Ran GTPase-activa 79.0 1.1 2.3E-05 32.0 1.1 88 2-98 30-136 (388)
78 PF13516 LRR_6: Leucine Rich r 78.3 0.2 4.3E-06 21.4 -1.8 10 82-91 3-12 (24)
79 smart00365 LRR_SD22 Leucine-ri 69.6 4.4 9.6E-05 17.9 1.6 12 38-49 6-17 (26)
80 smart00368 LRR_RI Leucine rich 60.2 7.8 0.00017 17.1 1.5 9 3-11 3-11 (28)
81 KOG4341 F-box protein containi 58.9 6.1 0.00013 29.7 1.5 11 81-91 401-411 (483)
82 TIGR00864 PCC polycystin catio 41.4 18 0.00039 33.2 1.8 31 8-47 1-32 (2740)
83 TIGR00864 PCC polycystin catio 22.2 72 0.0016 29.8 2.2 30 40-69 1-31 (2740)
84 KOG3763 mRNA export factor TAP 20.8 58 0.0013 25.5 1.3 10 59-68 272-281 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.3e-11 Score=96.79 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=30.1
Q ss_pred EEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCC
Q 046123 38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVES 106 (108)
Q Consensus 38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~ 106 (108)
+|++++|.+. .+|+.++.+++|+.|++++|.....+|..++.+++|++|++++|...+.+|..++++++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 4444444433 33333444444444444443333344444444444444444444443444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.23 E-value=1.9e-11 Score=95.87 Aligned_cols=99 Identities=24% Similarity=0.371 Sum_probs=63.2
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++|++|++++|.....+|..++.+.+| + +|++++|.+. .+|..+..+++|+.|++++|.....+|+.++.+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L---~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSL---K-----VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCC---C-----EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 345555555543333455556666666 6 7777777665 556667777777777777765555667777777
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|+++++++|.....+|..++++++|+
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCC
Confidence 7777777777666666776666666553
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.11 E-value=2.5e-12 Score=83.64 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=53.6
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc-cccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK-SLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l 80 (108)
++|++|++.+ ++++++|..++.+++| + .|+++-|++..+|.+|+.++.|+.|++..|+.-. .+|..|..|
T Consensus 56 ~nlevln~~n-nqie~lp~~issl~kl---r-----~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 56 KNLEVLNLSN-NQIEELPTSISSLPKL---R-----ILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred hhhhhhhccc-chhhhcChhhhhchhh---h-----heecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHH
Confidence 4566666666 5677777777777777 7 7777777777677777777777777776643211 234444433
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVES 106 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~ 106 (108)
..|+.+.+.+ +-...+|..++++++
T Consensus 127 ~tlralyl~d-ndfe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 127 TTLRALYLGD-NDFEILPPDVGKLTN 151 (264)
T ss_pred HHHHHHHhcC-CCcccCChhhhhhcc
Confidence 3344444433 222334444444443
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=4.6e-10 Score=85.20 Aligned_cols=92 Identities=29% Similarity=0.362 Sum_probs=77.7
Q ss_pred CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
++.|++++|.....+|..+..+.+| + .|++++|.+. .+|+.++.+++|+.|++++|+..+.+|+.++.+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L---~-----~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHL---Q-----SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCC---C-----EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 5678888855445678888888999 8 9999999998 77888999999999999997766789999999999
Q ss_pred CCEEeecCCCCCcccccCcCC
Q 046123 83 LRTLYLSGCSKLKNVPETLGK 103 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~~~~~ 103 (108)
|++|++++|.....+|..++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCEEECcCCcccccCChHHhh
Confidence 999999998888888876644
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.95 E-value=3e-11 Score=78.72 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=76.7
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
.++.|-+++ ++++.+|+.+..+.+| + .|++.+|++..+|.++..+++|+.|+++- +.+..+|.+||.++.
T Consensus 34 ~ITrLtLSH-NKl~~vppnia~l~nl---e-----vln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVVPPNIAELKNL---E-----VLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPA 103 (264)
T ss_pred hhhhhhccc-CceeecCCcHHHhhhh---h-----hhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCch
Confidence 456677888 6888899888888888 8 99999999999999999999999999987 678889999999999
Q ss_pred CCEEeecCCCCCc-ccccCcCCC
Q 046123 83 LRTLYLSGCSKLK-NVPETLGKV 104 (108)
Q Consensus 83 L~~l~l~~~~~~~-~~p~~~~~l 104 (108)
|+++|+.+|+... .+|..|-.|
T Consensus 104 levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred hhhhhccccccccccCCcchhHH
Confidence 9999999877644 566554333
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=3.4e-09 Score=57.39 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=39.4
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~ 92 (108)
.+++++|++..+|+. |.++++|+.+++++ +.+..++ .+|.++++|+++++++|.
T Consensus 5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred EEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 778888888777654 77788888888887 4455555 467788888888888764
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.85 E-value=1.5e-08 Score=81.56 Aligned_cols=61 Identities=41% Similarity=0.705 Sum_probs=30.2
Q ss_pred EEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCccccc
Q 046123 38 SFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE 99 (108)
Q Consensus 38 ~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~ 99 (108)
.|++.+|. +..+|..++.+++|+.|++++|+.+..+|..+ ++++|+++++++|..+..+|.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 55554432 33445455555555555555555555555443 345555555555544444443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.83 E-value=1.6e-08 Score=81.31 Aligned_cols=90 Identities=30% Similarity=0.492 Sum_probs=68.0
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
.+|+.|++.+ +.++.++..+..+.+| + .++++++. +..+| .+..+++|+.|++++|..+..+|..++.+
T Consensus 611 ~~L~~L~L~~-s~l~~L~~~~~~l~~L---k-----~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQG-SKLEKLWDGVHSLTGL---R-----NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcC-ccccccccccccCCCC---C-----EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence 3566777777 4577777666677777 7 88887754 55555 36778888888888888888888888888
Q ss_pred CCCCEEeecCCCCCcccccCc
Q 046123 81 RSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.+|+++++++|+.+..+|..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC
Confidence 888888888888888887654
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=6.6e-09 Score=56.21 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=51.0
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCK 68 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 68 (108)
++|++|++++ +.++.+| ..+..+.+| + ++++++|.+..+++ .|.++++|+.+++++|+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L---~-----~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNL---E-----TLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTE---S-----EEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCC---C-----EeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5789999999 5888987 577889999 9 99999999998865 48999999999999964
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.81 E-value=5.8e-10 Score=84.39 Aligned_cols=82 Identities=29% Similarity=0.363 Sum_probs=65.8
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
..|+.||+++ ++++++|..+..-.++ - +|++++|+|.++|.. |-+++.|-+|++++ +.+..+|+-+..+
T Consensus 103 ~dLt~lDLSh-NqL~EvP~~LE~AKn~---i-----VLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 103 KDLTILDLSH-NQLREVPTNLEYAKNS---I-----VLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL 172 (1255)
T ss_pred ccceeeecch-hhhhhcchhhhhhcCc---E-----EEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence 4578888888 6888888777766666 6 888888888888876 77888888888888 6788888888778
Q ss_pred CCCCEEeecCCCC
Q 046123 81 RSLRTLYLSGCSK 93 (108)
Q Consensus 81 ~~L~~l~l~~~~~ 93 (108)
..|++|++++|..
T Consensus 173 ~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPL 185 (1255)
T ss_pred hhhhhhhcCCChh
Confidence 8888888887654
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=6.1e-09 Score=81.69 Aligned_cols=82 Identities=33% Similarity=0.441 Sum_probs=63.9
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
|+.|++||+++|..+.++|+.++.+.+| + +|+++++.++.+|.+++++..|.+|++..+.....+|.....+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~L---r-----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHL---R-----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhh---h-----cccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 4567888888877788888888888888 8 8888888888888888888888888888766555665555668
Q ss_pred CCCCEEeecC
Q 046123 81 RSLRTLYLSG 90 (108)
Q Consensus 81 ~~L~~l~l~~ 90 (108)
.+|+++.+..
T Consensus 642 ~~Lr~L~l~~ 651 (889)
T KOG4658|consen 642 QSLRVLRLPR 651 (889)
T ss_pred ccccEEEeec
Confidence 8888887765
No 12
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=5e-08 Score=74.28 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=75.0
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
+++|+.|++++|.....+|+.++.+.+| + .|++++|++. .+|+.++.+++|+.|++++|+..+.+|..++.
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L---~-----~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSL---E-----VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCC---C-----EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 4689999999965555788889999999 9 9999999998 78888999999999999998877789998876
Q ss_pred C-CCCCEEeecCCCCCcccc
Q 046123 80 L-RSLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 80 l-~~L~~l~l~~~~~~~~~p 98 (108)
. .++..+++.+|......|
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccccCceEEecCCccccCCC
Confidence 4 467788998876554444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.69 E-value=2.4e-09 Score=77.26 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-----------------------ccCcc-cccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-----------------------GLPAS-IELLS 57 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----------------------~~p~~-~~~l~ 57 (108)
++|..|++++ +.+.++|..++.+..| + .++++.|++. .++++ +..|.
T Consensus 435 ~kLt~L~L~N-N~Ln~LP~e~~~lv~L---q-----~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 435 QKLTFLDLSN-NLLNDLPEEMGSLVRL---Q-----TLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hcceeeeccc-chhhhcchhhhhhhhh---h-----eecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 4567777777 6777788777777777 7 7777766553 34444 66777
Q ss_pred CCcEEeccCCcCCccccccccCCCCCCEEeecCCCCC
Q 046123 58 GSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 58 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~ 94 (108)
+|..||+.+ +.+..+|+.+|+|.+|+++++.+|++-
T Consensus 506 nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 777888776 567777777788888888888776543
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=2e-09 Score=77.67 Aligned_cols=90 Identities=32% Similarity=0.445 Sum_probs=62.2
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCCccccccccCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
+|+.|++.. +++..+| .++.+..| . .+.++.|+++.+|++. .++.++..||+.+ +++++.|+.+.-++
T Consensus 207 ~L~~LyL~~-Nki~~lP-ef~gcs~L---~-----Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr 275 (565)
T KOG0472|consen 207 SLELLYLRR-NKIRFLP-EFPGCSLL---K-----ELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR 275 (565)
T ss_pred hhHHHHhhh-cccccCC-CCCccHHH---H-----HHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence 344455555 4555555 45555555 5 6666666666666663 3778888888888 66888888887888
Q ss_pred CCCEEeecCCCCCcccccCcCCC
Q 046123 82 SLRTLYLSGCSKLKNVPETLGKV 104 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p~~~~~l 104 (108)
+|.++|+++ +.+..+|..+++|
T Consensus 276 sL~rLDlSN-N~is~Lp~sLgnl 297 (565)
T KOG0472|consen 276 SLERLDLSN-NDISSLPYSLGNL 297 (565)
T ss_pred hhhhhcccC-CccccCCcccccc
Confidence 888888887 5567788777766
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=7.4e-08 Score=62.73 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCCccccc--cccC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNLKSLPS--TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~ 79 (108)
+|+.|++++ +.++.+. .+..+..| + .|++++|+++++.+.+ ..+++|+.|++++ +.+..+-+ .++.
T Consensus 43 ~L~~L~Ls~-N~I~~l~-~l~~L~~L---~-----~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 43 KLEVLDLSN-NQITKLE-GLPGLPRL---K-----TLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSS 111 (175)
T ss_dssp T--EEE-TT-S--S--T-T----TT----------EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred CCCEEECCC-CCCcccc-CccChhhh---h-----hcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence 455666666 3455553 23445555 5 6666666666554443 2456666666665 33443322 3445
Q ss_pred CCCCCEEeecCCC
Q 046123 80 LRSLRTLYLSGCS 92 (108)
Q Consensus 80 l~~L~~l~l~~~~ 92 (108)
+++|+++++.+|.
T Consensus 112 l~~L~~L~L~~NP 124 (175)
T PF14580_consen 112 LPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TT-G
T ss_pred CCCcceeeccCCc
Confidence 5666666666644
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.57 E-value=3.9e-09 Score=79.15 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP 50 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p 50 (108)
++|+.|++++ +.+..+ ++.+...++| . +|++++|++..++
T Consensus 293 t~L~~L~lS~-NaI~rih~d~WsftqkL---~-----~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 293 TSLEQLDLSY-NAIQRIHIDSWSFTQKL---K-----ELDLSSNRITRLD 333 (873)
T ss_pred chhhhhccch-hhhheeecchhhhcccc---e-----eEeccccccccCC
Confidence 3455555555 334443 3444555555 5 5555555554443
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=6.3e-08 Score=63.06 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCcEEeccCCcCCCcCCcccC-CccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccc-cCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVG-KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTI-NGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l 80 (108)
.++.|++++ +.++.+.. ++ .+.+| + .|++++|.++.++ .+..+++|+.|++++ +.++.+.+++ ..+
T Consensus 20 ~~~~L~L~~-n~I~~Ie~-L~~~l~~L---~-----~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRG-NQISTIEN-LGATLDKL---E-----VLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNL 87 (175)
T ss_dssp -----------------S---TT-TT----------EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-
T ss_pred ccccccccc-cccccccc-hhhhhcCC---C-----EEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhC
Confidence 467899999 57777643 34 46788 8 9999999999875 588899999999999 6788886655 468
Q ss_pred CCCCEEeecCCCCCccc
Q 046123 81 RSLRTLYLSGCSKLKNV 97 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~ 97 (108)
++|++|++++|. +..+
T Consensus 88 p~L~~L~L~~N~-I~~l 103 (175)
T PF14580_consen 88 PNLQELYLSNNK-ISDL 103 (175)
T ss_dssp TT--EEE-TTS----SC
T ss_pred CcCCEEECcCCc-CCCh
Confidence 999999999854 4443
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.55 E-value=3.8e-09 Score=80.07 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=60.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
.+|..+|++. +.+..+|+++..+.+| + .|++++|.+..+....+.+.+++.|+++. +.+..+|+++..++
T Consensus 222 ~NL~dvDlS~-N~Lp~vPecly~l~~L---r-----rLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 222 HNLRDVDLSE-NNLPIVPECLYKLRNL---R-----RLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred hhhhhccccc-cCCCcchHHHhhhhhh---h-----eeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence 3556667766 5677777777777777 7 77777777766665566666677777766 45666666666666
Q ss_pred CCCEEeecCCCC-CcccccCcCCCCCC
Q 046123 82 SLRTLYLSGCSK-LKNVPETLGKVESL 107 (108)
Q Consensus 82 ~L~~l~l~~~~~-~~~~p~~~~~l~~L 107 (108)
.|+.|.+.+|.. ..-+|..++++..|
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhh
Confidence 666666655433 23456666555433
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=7e-08 Score=72.61 Aligned_cols=95 Identities=22% Similarity=0.317 Sum_probs=67.7
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+.|++||++. +.+.++| +.+..-.++ . +|++++|+|..+... |..+.+|..+.++. +.+..+|. .|+
T Consensus 149 ~alrslDLSr-N~is~i~~~sfp~~~ni---~-----~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk 218 (873)
T KOG4194|consen 149 PALRSLDLSR-NLISEIPKPSFPAKVNI---K-----KLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFK 218 (873)
T ss_pred hhhhhhhhhh-chhhcccCCCCCCCCCc---e-----EEeeccccccccccccccccchheeeeccc-CcccccCHHHhh
Confidence 4577888888 5777776 555555667 7 888888888877554 88888888888888 56778775 566
Q ss_pred CCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESL 107 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L 107 (108)
.+++|+.|++.. |.++.+- ..|+.+.+|
T Consensus 219 ~L~~L~~LdLnr-N~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 219 RLPKLESLDLNR-NRIRIVEGLTFQGLPSL 247 (873)
T ss_pred hcchhhhhhccc-cceeeehhhhhcCchhh
Confidence 688888888887 4445442 345555444
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=6.9e-08 Score=75.92 Aligned_cols=97 Identities=28% Similarity=0.391 Sum_probs=71.5
Q ss_pred CCcEEeccCCcC-CCcCC-cccCCccccccccCcceeEEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 3 SLKTLVLSGCLK-LKKFP-DIVGKSSQRKLQAGISSWSFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~-~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
.|++|-+.++.. +..++ ..+..++.| + +||+++|. +..+|..++.+.+|++|++++ ..+..+|.++++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~L---r-----VLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLL---R-----VLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN 616 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcce---E-----EEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH
Confidence 355666655321 44444 335667888 8 99998775 568898899999999999998 678889999999
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++.|.+|++..+.....+|.....|++||
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HHhhheeccccccccccccchhhhccccc
Confidence 99999999988766666666555566554
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.29 E-value=5.1e-07 Score=70.23 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=37.3
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCc
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.|++++|.++.+|.. ..+|+.|++++ +.+..+|+.++.+.+|+++++++|+.....|..+
T Consensus 406 ~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 406 ELMVSGNRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEEccCCcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 455555555544432 23456666666 4466777777788888888888877665544433
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.28 E-value=8.8e-08 Score=74.68 Aligned_cols=80 Identities=30% Similarity=0.383 Sum_probs=48.8
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+.|++|++++ +.+..+| ..+.++..| . .|+++||.++.+|..+..+..|++|...+ +.+..+| .+..+
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~L---e-----eL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l 451 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEEL---E-----ELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQL 451 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHh---H-----HHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhc
Confidence 4567777777 5667676 344555666 6 66777776666666566666666666555 4455555 35555
Q ss_pred CCCCEEeecCCC
Q 046123 81 RSLRTLYLSGCS 92 (108)
Q Consensus 81 ~~L~~l~l~~~~ 92 (108)
++|+++|++.|+
T Consensus 452 ~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 452 PQLKVLDLSCNN 463 (1081)
T ss_pred CcceEEecccch
Confidence 566666665543
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1.1e-06 Score=44.64 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccc
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL 73 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l 73 (108)
+|++++|+++.+|+.+..+++|+.|++++| .+.++
T Consensus 5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 5 ELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp EEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred EEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 666666666666665666666666666664 34444
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.24 E-value=1.5e-07 Score=73.48 Aligned_cols=89 Identities=31% Similarity=0.410 Sum_probs=76.7
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
+|++|+++. +.+..+|..+..+.+| + .+.++.|.+.++|.+...+.+|+++.+.. +.+..+|.++..+++
T Consensus 46 ~L~~l~lsn-n~~~~fp~~it~l~~L---~-----~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSN-NQISSFPIQITLLSHL---R-----QLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN 115 (1081)
T ss_pred eeEEeeccc-cccccCCchhhhHHHH---h-----hcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence 478999998 7899999888888899 8 99999999999998899999999999987 778899999999999
Q ss_pred CCEEeecCCCCCcccccCcC
Q 046123 83 LRTLYLSGCSKLKNVPETLG 102 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~~~~ 102 (108)
|++++++.|. ...+|..+.
T Consensus 116 l~~LdlS~N~-f~~~Pl~i~ 134 (1081)
T KOG0618|consen 116 LQYLDLSFNH-FGPIPLVIE 134 (1081)
T ss_pred ccccccchhc-cCCCchhHH
Confidence 9999999954 455665443
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.22 E-value=5.3e-08 Score=70.11 Aligned_cols=68 Identities=28% Similarity=0.477 Sum_probs=35.8
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCcc-ccccccCCCCCCEEeecCCCCCccccc-CcCCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKS-LPSTINGLRSLRTLYLSGCSKLKNVPE-TLGKVES 106 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~l~l~~~~~~~~~p~-~~~~l~~ 106 (108)
.+++..|+|+.+|+. |+.+.+|+.|+++.| .+++ -|++|.++.++..+.+-+++.++.+|. .|++|.+
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 345555666655544 555666666666653 3333 344555555555555555455555553 3444443
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=3e-06 Score=43.00 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=13.8
Q ss_pred CCcEEeccCCcCCccccccccCCCCCCEEeecC
Q 046123 58 GSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSG 90 (108)
Q Consensus 58 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 90 (108)
+|+.|++++ +.+.++|+.++++++|+++++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence 344444444 23444444444444444444444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.18 E-value=1.7e-07 Score=70.14 Aligned_cols=92 Identities=28% Similarity=0.443 Sum_probs=51.9
Q ss_pred CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCC
Q 046123 4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSL 83 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 83 (108)
|++|-+++ ++++.+|+.++...+| . .+|.+.|.+..+|+.++.+.+|+.+.+.. +.+..+|+.+..+ .|
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl---~-----~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pL 213 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTL---A-----HLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PL 213 (722)
T ss_pred ceeEEEec-CccccCCcccccchhH---H-----HhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ce
Confidence 44555555 5666666666655566 6 66666666666666665555555555554 3344555544432 25
Q ss_pred CEEeecCCCCCcccccCcCCCCCC
Q 046123 84 RTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 84 ~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
..||++. |.+..+|-.|.+|+.|
T Consensus 214 i~lDfSc-Nkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 214 IRLDFSC-NKISYLPVDFRKMRHL 236 (722)
T ss_pred eeeeccc-Cceeecchhhhhhhhh
Confidence 5566655 4455566555555544
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.02 E-value=1.6e-05 Score=61.93 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=23.7
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGC 91 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 91 (108)
.|++++|.+..+|..+. .+|+.|++++ +.+..+|+.+. .+|++|++++|
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC
Confidence 44444444444443332 3455555554 34445555442 35666666654
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.01 E-value=2.7e-06 Score=61.53 Aligned_cols=83 Identities=23% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 78 (108)
++.|+.+++++ ++++.+. .++....++ + .|++..|++..+... |.++..|+.|++.+|+.....|.+|.
T Consensus 273 L~~L~~lnlsn-N~i~~i~~~aFe~~a~l---~-----eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 273 LPNLRKLNLSN-NKITRIEDGAFEGAAEL---Q-----ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cccceEeccCC-Cccchhhhhhhcchhhh---h-----hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 45677888877 5677763 566667777 7 778888887766554 77788888888888544444566777
Q ss_pred CCCCCCEEeecCCC
Q 046123 79 GLRSLRTLYLSGCS 92 (108)
Q Consensus 79 ~l~~L~~l~l~~~~ 92 (108)
.+.+|.++++-.|.
T Consensus 344 ~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNP 357 (498)
T ss_pred ccceeeeeehccCc
Confidence 77778888776654
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.99 E-value=2.2e-05 Score=61.18 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=51.9
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
.++.|++++ +.++.+|..+. .+| + .|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+
T Consensus 200 ~L~~L~Ls~-N~LtsLP~~l~--~nL---~-----~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~ 263 (754)
T PRK15370 200 QITTLILDN-NELKSLPENLQ--GNI---K-----TLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SA 263 (754)
T ss_pred CCcEEEecC-CCCCcCChhhc--cCC---C-----EEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CC
Confidence 456666666 45666664332 356 6 77777777777765443 36777788774 4567776653 46
Q ss_pred CCEEeecCCCCCcccccCc
Q 046123 83 LRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~~~ 101 (108)
|++|++++| .+..+|..+
T Consensus 264 L~~L~Ls~N-~L~~LP~~l 281 (754)
T PRK15370 264 LQSLDLFHN-KISCLPENL 281 (754)
T ss_pred CCEEECcCC-ccCcccccc
Confidence 888888875 445667543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=3.6e-06 Score=60.47 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=54.9
Q ss_pred CCcEEeccCCcCCCcCCcccCCcc-ccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSS-QRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~-~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
.++.+++.+ +.+.++++...... ++ + .+++++|.+..+|..++.+++|+.|++++ +.+.++|...+...
T Consensus 117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL---~-----~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~ 186 (394)
T COG4886 117 NLTSLDLDN-NNITDIPPLIGLLKSNL---K-----ELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLS 186 (394)
T ss_pred ceeEEecCC-cccccCccccccchhhc---c-----cccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhh
Confidence 355666666 56666666555553 66 6 77777777776666667777777777776 45666666555566
Q ss_pred CCCEEeecCCCCCccccc
Q 046123 82 SLRTLYLSGCSKLKNVPE 99 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p~ 99 (108)
.|+.+++++ +.+..+|.
T Consensus 187 ~L~~L~ls~-N~i~~l~~ 203 (394)
T COG4886 187 NLNNLDLSG-NKISDLPP 203 (394)
T ss_pred hhhheeccC-CccccCch
Confidence 677777776 34455554
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=2.5e-07 Score=58.34 Aligned_cols=61 Identities=20% Similarity=0.417 Sum_probs=39.0
Q ss_pred EEEecCccccccCccccc-CCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccC
Q 046123 38 SFILEGTAIRGLPASIEL-LSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET 100 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~ 100 (108)
..++++|.++++|+.|.. .+.++.+++++ +.++++|..+..++.|+.++++.|. +...|+.
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 566777777777766543 34677777776 5577777667777777777777643 3334443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.92 E-value=2.5e-06 Score=61.31 Aligned_cols=79 Identities=28% Similarity=0.329 Sum_probs=61.7
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
+|+.|++++ +.+..+|..+..++.| + .|+++.|++..+|...+..+.|+.+++++ +.+..+|..+.....
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L---~-----~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNL---K-----NLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSA 210 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccc---c-----ccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhh
Confidence 578888888 6788877667778888 7 88888888888887766778888888888 567788876655666
Q ss_pred CCEEeecCC
Q 046123 83 LRTLYLSGC 91 (108)
Q Consensus 83 L~~l~l~~~ 91 (108)
|+++.+++|
T Consensus 211 L~~l~~~~N 219 (394)
T COG4886 211 LEELDLSNN 219 (394)
T ss_pred hhhhhhcCC
Confidence 888888775
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=3.1e-05 Score=60.53 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=6.8
Q ss_pred CCcEEeccCCcCCCcCC
Q 046123 3 SLKTLVLSGCLKLKKFP 19 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p 19 (108)
+|++|++++ +.++.+|
T Consensus 243 ~Lk~LdLs~-N~LtsLP 258 (788)
T PRK15387 243 ELRTLEVSG-NQLTSLP 258 (788)
T ss_pred CCcEEEecC-CccCccc
Confidence 344444444 2344443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.91 E-value=2.5e-06 Score=60.20 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=56.8
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCc--------------
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCK-------------- 68 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~-------------- 68 (108)
.|+.+|+++ +.++.+..++.-.+.+ + .|+++.|++..+-. +..+++|+.|++++|.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pki---r-----~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKL---R-----RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccce---e-----EEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 366777887 5677777666666777 7 77777777765543 6667777777777642
Q ss_pred --------CCccccccccCCCCCCEEeecCCCCCcccc--cCcCCCC
Q 046123 69 --------NLKSLPSTINGLRSLRTLYLSGCSKLKNVP--ETLGKVE 105 (108)
Q Consensus 69 --------~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p--~~~~~l~ 105 (108)
.+..+ ++++.+.+|.++|+++|+ +..+. ..+++++
T Consensus 355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLP 399 (490)
T ss_pred eeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhccccccc
Confidence 11111 245567788888888853 33332 2345544
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.90 E-value=3.5e-06 Score=58.42 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=24.4
Q ss_pred EEEecCcccc-----ccCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCC
Q 046123 38 SFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~ 92 (108)
.+++++|.++ .++..+..+.+|+.|++++|.... .++..+...++|+++++++|.
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 5555555444 122223444455555555533221 122233334456666665543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=3.2e-07 Score=68.70 Aligned_cols=52 Identities=31% Similarity=0.492 Sum_probs=21.6
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSG 90 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 90 (108)
.+.+++|++..+|+.++...+|..++.+. +.+..+|+-++++.+|+.+.++.
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh
Confidence 33444444444444444334444444443 23334444444444444444444
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.82 E-value=7.3e-06 Score=56.81 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCcEEeccCCcCCC-----cCCcccCCccccccccCcceeEEEecCcccc-----ccCcccccCCCCcEEeccCCcCC-
Q 046123 2 KSLKTLVLSGCLKLK-----KFPDIVGKSSQRKLQAGISSWSFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNL- 70 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~- 70 (108)
++|+.|++++|. ++ .++..+..+.++ + .+++++|.+. .++..+..+++|+.+++++|...
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L---~-----~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDL---K-----ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCc---C-----EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 456777777743 33 122333444566 6 7777777665 12333445567788888775422
Q ss_pred ---ccccccccCCCCCCEEeecCCCCC
Q 046123 71 ---KSLPSTINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 71 ---~~lp~~~~~l~~L~~l~l~~~~~~ 94 (108)
..+...+..+++|+++++++|...
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 123344556677888888776543
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=3.3e-06 Score=53.35 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=65.0
Q ss_pred CcEEeccCCcCCCcCCcccCC-ccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 4 LKTLVLSGCLKLKKFPDIVGK-SSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~~~~~-~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
|+..++++ +.++++|+.+.. .+.. + .+++++|.++.+|..+..++.|+.++++. +.+...|..+..+.+
T Consensus 55 l~~i~ls~-N~fk~fp~kft~kf~t~---t-----~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 55 LTKISLSD-NGFKKFPKKFTIKFPTA---T-----TLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIK 124 (177)
T ss_pred EEEEeccc-chhhhCCHHHhhccchh---h-----hhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHh
Confidence 55678888 689999876643 4567 7 88999999999999999999999999998 557778887877889
Q ss_pred CCEEeecCC
Q 046123 83 LRTLYLSGC 91 (108)
Q Consensus 83 L~~l~l~~~ 91 (108)
+.+|+..+|
T Consensus 125 l~~Lds~~n 133 (177)
T KOG4579|consen 125 LDMLDSPEN 133 (177)
T ss_pred HHHhcCCCC
Confidence 999988874
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.50 E-value=3.7e-05 Score=54.45 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=54.9
Q ss_pred CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCccc---cc
Q 046123 23 GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNV---PE 99 (108)
Q Consensus 23 ~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~---p~ 99 (108)
..++.| . .+|+++|.|+.+-++..-.+.++.|+++. +.+..... +..+++|+.+|+++|. +..+ ..
T Consensus 281 dTWq~L---t-----elDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQEL---T-----ELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL 349 (490)
T ss_pred chHhhh---h-----hccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence 445667 7 89999999999988888899999999999 45655544 7778999999999963 3333 23
Q ss_pred CcCCCCC
Q 046123 100 TLGKVES 106 (108)
Q Consensus 100 ~~~~l~~ 106 (108)
.+++.+.
T Consensus 350 KLGNIKt 356 (490)
T KOG1259|consen 350 KLGNIKT 356 (490)
T ss_pred hhcCEee
Confidence 4555543
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00021 Score=52.37 Aligned_cols=12 Identities=67% Similarity=1.113 Sum_probs=7.2
Q ss_pred CCCEEeecCCCC
Q 046123 82 SLRTLYLSGCSK 93 (108)
Q Consensus 82 ~L~~l~l~~~~~ 93 (108)
+|++|++++|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 566666666543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=0.00012 Score=53.33 Aligned_cols=79 Identities=25% Similarity=0.258 Sum_probs=54.2
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++++.+++.+ +.++.+...+..+.+| + ++++++|.|..+.. +..+..|+.|++.+ +.+..+.. +..+.
T Consensus 95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L---~-----~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~ 162 (414)
T KOG0531|consen 95 KSLEALDLYD-NKIEKIENLLSSLVNL---Q-----VLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLK 162 (414)
T ss_pred cceeeeeccc-cchhhcccchhhhhcc---h-----heeccccccccccc-hhhccchhhheecc-CcchhccC-Cccch
Confidence 5677778877 5677765545667777 7 88888888876543 56666688888887 44555543 45567
Q ss_pred CCCEEeecCCC
Q 046123 82 SLRTLYLSGCS 92 (108)
Q Consensus 82 ~L~~l~l~~~~ 92 (108)
.|+.+++++|.
T Consensus 163 ~L~~l~l~~n~ 173 (414)
T KOG0531|consen 163 SLKLLDLSYNR 173 (414)
T ss_pred hhhcccCCcch
Confidence 77778887753
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=1.5e-05 Score=61.74 Aligned_cols=77 Identities=29% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+.++.|++++ |++.++. .+..+.+| + .||+++|++..+|.- ..++. |+.|.+++ +.+.++ .++.++
T Consensus 187 ~ale~LnLsh-Nk~~~v~-~Lr~l~~L---k-----hLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL-~gie~L 253 (1096)
T KOG1859|consen 187 PALESLNLSH-NKFTKVD-NLRRLPKL---K-----HLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL-RGIENL 253 (1096)
T ss_pred HHhhhhccch-hhhhhhH-HHHhcccc---c-----ccccccchhccccccchhhhh-heeeeecc-cHHHhh-hhHHhh
Confidence 3567888888 5677665 56677888 8 889999988877754 44554 88888887 455555 347778
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
++|+.||+++|
T Consensus 254 ksL~~LDlsyN 264 (1096)
T KOG1859|consen 254 KSLYGLDLSYN 264 (1096)
T ss_pred hhhhccchhHh
Confidence 88888888885
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.00053 Score=50.26 Aligned_cols=82 Identities=26% Similarity=0.551 Sum_probs=48.1
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCc-cccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGT-AIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
..++.|++++| .++.+|.. ..+| + .|.++++ .+..+|..+. .+|+.|.+.+|..+..+|+.
T Consensus 52 ~~l~~L~Is~c-~L~sLP~L---P~sL---t-----sL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s---- 113 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPVL---PNEL---T-----EITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES---- 113 (426)
T ss_pred cCCCEEEeCCC-CCcccCCC---CCCC---c-----EEEccCCCCcccCCchhh--hhhhheEccCcccccccccc----
Confidence 35677888875 67777632 2345 6 7777653 4555665442 57788888877666666654
Q ss_pred CCCCEEeecCC--CCCcccccCcCC
Q 046123 81 RSLRTLYLSGC--SKLKNVPETLGK 103 (108)
Q Consensus 81 ~~L~~l~l~~~--~~~~~~p~~~~~ 103 (108)
|++|++..+ ..+..+|..+..
T Consensus 114 --Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 114 --VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred --cceEEeCCCCCcccccCcchHhh
Confidence 455555442 224556654433
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00022 Score=55.37 Aligned_cols=80 Identities=26% Similarity=0.421 Sum_probs=50.2
Q ss_pred CCCCcEEeccCCcCC--CcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc--cc
Q 046123 1 MKSLKTLVLSGCLKL--KKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP--ST 76 (108)
Q Consensus 1 l~~L~~L~l~~~~~~--~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp--~~ 76 (108)
+|+|++|.+.| ... .++-....++++| . .||+++++++.+ .+++.+++|+.|.+.+- .+.... ..
T Consensus 147 LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL---~-----sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~ 215 (699)
T KOG3665|consen 147 LPSLRSLVISG-RQFDNDDFSQLCASFPNL---R-----SLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLID 215 (699)
T ss_pred CcccceEEecC-ceecchhHHHHhhccCcc---c-----eeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHH
Confidence 45667777666 222 1122333456677 7 888888888766 55778888888777652 222222 24
Q ss_pred ccCCCCCCEEeecCC
Q 046123 77 INGLRSLRTLYLSGC 91 (108)
Q Consensus 77 ~~~l~~L~~l~l~~~ 91 (108)
++++++|++||+|..
T Consensus 216 LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRD 230 (699)
T ss_pred HhcccCCCeeecccc
Confidence 677888888888863
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.02 E-value=0.00047 Score=29.60 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=9.6
Q ss_pred EEEecCccccccCcccc
Q 046123 38 SFILEGTAIRGLPASIE 54 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~ 54 (108)
+||+++|+++.+|+.|+
T Consensus 4 ~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 4 YLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp EEEETSSEESEEGTTTT
T ss_pred EEECCCCcCEeCChhhc
Confidence 56666666555555443
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00037 Score=51.21 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC--cccccCCCCcEEeccCCcCCcc--cccc
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP--ASIELLSGSVLLNLKDCKNLKS--LPST 76 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~--lp~~ 76 (108)
+++|+.|++.+|+.+........-+..| + .||+++|.+.+.+ ...+.++.|..|++++|. +.+ .|++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L---~-----~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~ 291 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTL---Q-----ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDV 291 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHH---h-----hccccCCcccccccccccccccchhhhhccccC-cchhcCCCc
Confidence 3566677777753222211112234456 6 8888888887766 347778888888888754 333 3443
Q ss_pred -----ccCCCCCCEEeecCCCC
Q 046123 77 -----INGLRSLRTLYLSGCSK 93 (108)
Q Consensus 77 -----~~~l~~L~~l~l~~~~~ 93 (108)
.....+|++|++..|+.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cchhhhcccccceeeecccCcc
Confidence 23457889999888543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.60 E-value=0.00084 Score=48.95 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=58.9
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLR 84 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 84 (108)
+.+.+.. +.++..-..+..+.++ . .+++..|.+..+...+..+.+|+.+++++ +.+..+.. +..+..|+
T Consensus 75 ~~l~l~~-n~i~~~~~~l~~~~~l---~-----~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~ 143 (414)
T KOG0531|consen 75 KELNLRQ-NLIAKILNHLSKLKSL---E-----ALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLK 143 (414)
T ss_pred Hhhccch-hhhhhhhcccccccce---e-----eeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchh
Confidence 3444555 4455533445667778 7 99999999998876688899999999999 56777644 56677799
Q ss_pred EEeecCCCCCcccc
Q 046123 85 TLYLSGCSKLKNVP 98 (108)
Q Consensus 85 ~l~l~~~~~~~~~p 98 (108)
.|++++| .+..+.
T Consensus 144 ~L~l~~N-~i~~~~ 156 (414)
T KOG0531|consen 144 ELNLSGN-LISDIS 156 (414)
T ss_pred hheeccC-cchhcc
Confidence 9999995 344443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0073 Score=40.56 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=49.7
Q ss_pred CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccC-CCCcEEeccCCcCCccccc--cccCC
Q 046123 4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELL-SGSVLLNLKDCKNLKSLPS--TINGL 80 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l-~~L~~L~l~~~~~~~~lp~--~~~~l 80 (108)
...+|+++| .+..++ .+..+..| . +|.+..|+|..+.+.+..+ ++|+.|.+.+ +.++++-+ .+..+
T Consensus 44 ~d~iDLtdN-dl~~l~-~lp~l~rL---~-----tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 44 FDAIDLTDN-DLRKLD-NLPHLPRL---H-----TLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASC 112 (233)
T ss_pred cceeccccc-chhhcc-cCCCcccc---c-----eEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccC
Confidence 445667763 344332 23556667 7 8888888888877766554 6688888887 44555432 34556
Q ss_pred CCCCEEeecCCC
Q 046123 81 RSLRTLYLSGCS 92 (108)
Q Consensus 81 ~~L~~l~l~~~~ 92 (108)
++|+++.+-+|.
T Consensus 113 p~L~~Ltll~Np 124 (233)
T KOG1644|consen 113 PKLEYLTLLGNP 124 (233)
T ss_pred CccceeeecCCc
Confidence 777777776653
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.50 E-value=0.0018 Score=27.75 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=9.8
Q ss_pred CCEEeecCCCCCcccccCcCC
Q 046123 83 LRTLYLSGCSKLKNVPETLGK 103 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~~~~~ 103 (108)
|++|++++|+ +..+|..|++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTTT
T ss_pred ccEEECCCCc-CEeCChhhcC
Confidence 4555555543 2355554443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.35 E-value=0.0069 Score=40.66 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCCcEEeccCCcCCCcCCcccC-CccccccccCcceeEEEecCccccccCc--ccccCCCCcEEeccCCcCCccccc---
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVG-KSSQRKLQAGISSWSFILEGTAIRGLPA--SIELLSGSVLLNLKDCKNLKSLPS--- 75 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~lp~--- 75 (108)
+.|.+|.+.. +.++.+.+.+. .++.+ . .|.+++|.+..+.+ ....++.|+.|.+-+|+ +...+.
T Consensus 64 ~rL~tLll~n-NrIt~I~p~L~~~~p~l---~-----~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~ 133 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPDLDTFLPNL---K-----TLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRL 133 (233)
T ss_pred cccceEEecC-Ccceeeccchhhhcccc---c-----eEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCcee
Confidence 5688899988 67888854444 45678 8 99999999886543 36778899999998853 444433
Q ss_pred -cccCCCCCCEEeecC
Q 046123 76 -TINGLRSLRTLYLSG 90 (108)
Q Consensus 76 -~~~~l~~L~~l~l~~ 90 (108)
.+..+++|++||.+.
T Consensus 134 yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEEecCcceEeehhh
Confidence 356788999999875
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0013 Score=48.42 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=7.5
Q ss_pred CCCCCEEeecCCCC
Q 046123 80 LRSLRTLYLSGCSK 93 (108)
Q Consensus 80 l~~L~~l~l~~~~~ 93 (108)
++.|+.||+++|+.
T Consensus 245 ~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 245 LQTLQELDLSNNNL 258 (505)
T ss_pred hhHHhhccccCCcc
Confidence 34556666666443
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.43 E-value=0.084 Score=31.69 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeec
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLS 89 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~ 89 (108)
.+.+..+ +..++.. +..+..++.+.+.+ .+..++. .|..+.+++.+++.
T Consensus 39 ~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 39 SINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp EEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence 5555443 4434332 44444555555543 2222222 33334455555543
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.28 E-value=0.01 Score=40.96 Aligned_cols=53 Identities=30% Similarity=0.414 Sum_probs=29.9
Q ss_pred EEEecCc--ccc-ccCcccccCCCCcEEeccCCcCCcccccc---ccCCCCCCEEeecCCC
Q 046123 38 SFILEGT--AIR-GLPASIELLSGSVLLNLKDCKNLKSLPST---INGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~--~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~---~~~l~~L~~l~l~~~~ 92 (108)
.|.++.| +++ .++.....+++|+++++++| .++. +++ ...+.+|..|++.+|.
T Consensus 69 kL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 69 KLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccCC
Confidence 7777777 444 44444555577777777773 3433 221 3344556666666654
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.10 E-value=0.0017 Score=50.79 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=43.6
Q ss_pred eccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc-cccCCCCCCEE
Q 046123 8 VLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTL 86 (108)
Q Consensus 8 ~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 86 (108)
+.++ |.+..+..++.-++.+ + .|+++.|++.++. .+..+.+|+.||++. +.+..+|. +..++. |..|
T Consensus 170 ~fsy-N~L~~mD~SLqll~al---e-----~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 170 SFSY-NRLVLMDESLQLLPAL---E-----SLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hcch-hhHHhHHHHHHHHHHh---h-----hhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heee
Confidence 3344 3444444455555556 6 7777777777664 567777777777777 55666654 222333 7777
Q ss_pred eecCC
Q 046123 87 YLSGC 91 (108)
Q Consensus 87 ~l~~~ 91 (108)
.+++|
T Consensus 238 ~lrnN 242 (1096)
T KOG1859|consen 238 NLRNN 242 (1096)
T ss_pred eeccc
Confidence 77764
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.01 E-value=0.023 Score=44.48 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC--cccccCCCCcEEeccCCcCCccc-----
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP--ASIELLSGSVLLNLKDCKNLKSL----- 73 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~l----- 73 (108)
+++|..||++++ .++.+ ..++.+.+| + .|.+.+=.+.... ..+..+++|+.||++........
T Consensus 172 FpNL~sLDIS~T-nI~nl-~GIS~LknL---q-----~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q 241 (699)
T KOG3665|consen 172 FPNLRSLDISGT-NISNL-SGISRLKNL---Q-----VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ 241 (699)
T ss_pred cCccceeecCCC-CccCc-HHHhccccH---H-----HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence 478999999994 57766 556778888 8 5544443333211 23678999999999874322211
Q ss_pred -cccccCCCCCCEEeecCCC
Q 046123 74 -PSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 74 -p~~~~~l~~L~~l~l~~~~ 92 (108)
-+.-..++.|+.||.++..
T Consensus 242 Ylec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 242 YLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhcccCccccEEecCCcc
Confidence 1223458899999998743
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.99 E-value=0.019 Score=39.60 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=7.0
Q ss_pred cccCCCCcEEeccCC
Q 046123 53 IELLSGSVLLNLKDC 67 (108)
Q Consensus 53 ~~~l~~L~~L~l~~~ 67 (108)
+..+++|+.|.++.|
T Consensus 61 ~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDN 75 (260)
T ss_pred CCCcchhhhhcccCC
Confidence 334444555555443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.80 E-value=0.23 Score=29.73 Aligned_cols=90 Identities=9% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
+++.+.+.. + +..++ ..+..+..+ + .+.+.. .+..++.. +..+++++.+.+.. + +..++. .+.+
T Consensus 36 ~l~~i~~~~-~-~~~i~~~~F~~~~~l---~-----~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 36 SLKSINFPN-N-LTSIGDNAFSNCKSL---E-----SITFPN-NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSSSFSN 102 (129)
T ss_dssp T-SEEEESS-T-TSCE-TTTTTT-TT----E-----EEEETS-TT-EE-TTTTTT-TTECEEEETT-T--BEEHTTTTTT
T ss_pred ccccccccc-c-ccccceeeeeccccc---c-----cccccc-cccccccccccccccccccccCc-c-ccEEchhhhcC
Confidence 566666655 2 66655 344555567 7 888865 55555544 77789999999876 3 555554 5666
Q ss_pred CCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVP-ETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~ 108 (108)
. +++.+.+.. + ...++ ..|.+..+|+
T Consensus 103 ~-~l~~i~~~~-~-~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 103 C-NLKEINIPS-N-ITKIEENAFKNCTKLK 129 (129)
T ss_dssp --T--EEE-TT-B--SS----GGG------
T ss_pred C-CceEEEECC-C-ccEECCccccccccCC
Confidence 5 888888765 2 33333 4577766654
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.0021 Score=45.22 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc--cccCCCCCCEEeecCCCCCccc
Q 046123 23 GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS--TINGLRSLRTLYLSGCSKLKNV 97 (108)
Q Consensus 23 ~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l~l~~~~~~~~~ 97 (108)
..|+.| . +|.++-|.|+++.+ +..|++|+.|.|.. +.+..+.+ .+.++++|++|.+..|.....-
T Consensus 38 ~kMp~l---E-----VLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 38 EKMPLL---E-----VLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred Hhcccc---e-----eEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 456677 7 88888888886643 77888888888877 45555543 4567788888888776655443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.0021 Score=45.25 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc--cccCCCCcEEeccCCcCCcccccc--
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS--IELLSGSVLLNLKDCKNLKSLPST-- 76 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~lp~~-- 76 (108)
|+.|++|.++- |.+..+.+ +..+..| + .+++..|.|.++.+- +.++++|+.|-+.+|+....-+..
T Consensus 40 Mp~lEVLsLSv-NkIssL~p-l~rCtrL---k-----ElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 40 MPLLEVLSLSV-NKISSLAP-LQRCTRL---K-----ELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cccceeEEeec-cccccchh-HHHHHHH---H-----HHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 57889999998 56776643 4678888 8 999999999987654 778999999999998766665542
Q ss_pred ---ccCCCCCCEEe
Q 046123 77 ---INGLRSLRTLY 87 (108)
Q Consensus 77 ---~~~l~~L~~l~ 87 (108)
+..+++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 34466666654
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.58 E-value=0.064 Score=21.36 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=3.4
Q ss_pred EEEecCcccc
Q 046123 38 SFILEGTAIR 47 (108)
Q Consensus 38 ~l~l~~~~~~ 47 (108)
.|++++|++.
T Consensus 5 ~L~l~~n~L~ 14 (17)
T PF13504_consen 5 TLDLSNNRLT 14 (17)
T ss_dssp EEEETSS--S
T ss_pred EEECCCCCCC
Confidence 4444444433
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.011 Score=42.15 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=22.5
Q ss_pred ccCCCCcEEeccCCcCCcc-ccccccCCCCCCEEeecCCC
Q 046123 54 ELLSGSVLLNLKDCKNLKS-LPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 54 ~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~l~l~~~~ 92 (108)
.+++++..||+++|..++. .-..|..++.|+++.++.|.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 4567777777777654432 11134455566666666653
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.80 E-value=0.1 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=7.6
Q ss_pred EEEecCccccccCcc
Q 046123 38 SFILEGTAIRGLPAS 52 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~ 52 (108)
.|++++|+++.+|+.
T Consensus 6 ~L~L~~N~l~~lp~~ 20 (26)
T smart00369 6 ELDLSNNQLSSLPPG 20 (26)
T ss_pred EEECCCCcCCcCCHH
Confidence 555555555555443
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.80 E-value=0.1 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=7.6
Q ss_pred EEEecCccccccCcc
Q 046123 38 SFILEGTAIRGLPAS 52 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~ 52 (108)
.|++++|+++.+|+.
T Consensus 6 ~L~L~~N~l~~lp~~ 20 (26)
T smart00370 6 ELDLSNNQLSSLPPG 20 (26)
T ss_pred EEECCCCcCCcCCHH
Confidence 555555555555443
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.43 E-value=0.0023 Score=44.04 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=29.6
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCc
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.+|++.|++..+-..+..++.+..++++. +.+..+|..++....++++++-. +.....|..+
T Consensus 46 vld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~ 107 (326)
T KOG0473|consen 46 VLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQ 107 (326)
T ss_pred eehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccc
Confidence 55555555554444455555555555554 34444555444444444444333 2233344433
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.039 Score=39.43 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=15.4
Q ss_pred EEEecCcccccc---CcccccCCCCcEEeccCC
Q 046123 38 SFILEGTAIRGL---PASIELLSGSVLLNLKDC 67 (108)
Q Consensus 38 ~l~l~~~~~~~~---p~~~~~l~~L~~L~l~~~ 67 (108)
.+|+++|.++.. ..-..++++|++|+++.|
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 555666655422 222445566666666553
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.23 E-value=0.097 Score=37.81 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=23.1
Q ss_pred cccCCCCcEEeccCCcCCcc----ccccccCCCCCCEEeecCCCC
Q 046123 53 IELLSGSVLLNLKDCKNLKS----LPSTINGLRSLRTLYLSGCSK 93 (108)
Q Consensus 53 ~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~l~l~~~~~ 93 (108)
+..+++|+.|++.+|....+ +-.+++.+++|+.+++++|..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 55666677777766543221 233455556666666666643
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.40 E-value=0.0027 Score=43.66 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLR 84 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 84 (108)
+.||++. +.+-.+...++.++.+ . .++++.|++.-.|..++....+..+++.. ++.+..|.+++..++++
T Consensus 45 tvld~~s-~r~vn~~~n~s~~t~~---~-----rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 45 TVLDLSS-NRLVNLGKNFSILTRL---V-----RLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK 114 (326)
T ss_pred eeehhhh-hHHHhhccchHHHHHH---H-----HHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence 3455554 3333333334444444 4 67788888887888887777777777766 56777888888888888
Q ss_pred EEeecCCCC
Q 046123 85 TLYLSGCSK 93 (108)
Q Consensus 85 ~l~l~~~~~ 93 (108)
+++...+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 888776543
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.54 E-value=0.016 Score=41.38 Aligned_cols=81 Identities=26% Similarity=0.276 Sum_probs=47.0
Q ss_pred CcEEeccCCcCCCcC--CcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccc--ccc
Q 046123 4 LKTLVLSGCLKLKKF--PDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPS--TIN 78 (108)
Q Consensus 4 L~~L~l~~~~~~~~~--p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~ 78 (108)
++.+|++. ..++.- -..++.+.+| + .+.+.++++. .+-..+.+-.+|..++++.|+.+.+.-. -+.
T Consensus 187 lq~lDLS~-s~it~stl~~iLs~C~kL---k-----~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 187 LQHLDLSN-SVITVSTLHGILSQCSKL---K-----NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hHHhhcch-hheeHHHHHHHHHHHHhh---h-----hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 55666665 333321 1233455666 6 6666666666 4444566667777777777765554322 245
Q ss_pred CCCCCCEEeecCCCC
Q 046123 79 GLRSLRTLYLSGCSK 93 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~ 93 (108)
+++.|..|+++.|..
T Consensus 258 scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFL 272 (419)
T ss_pred hhhhHhhcCchHhhc
Confidence 666777777776643
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=0.16 Score=34.17 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=30.1
Q ss_pred EEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-cccc-CCCCCCEEeecCCCCCcc
Q 046123 38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STIN-GLRSLRTLYLSGCSKLKN 96 (108)
Q Consensus 38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~-~l~~L~~l~l~~~~~~~~ 96 (108)
.+|.+++.|... -+.+..+..++.+.+.+|..+.+.= +.++ -.++|+.|++++|.++++
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 555566555522 2335555666666666654443210 1122 234677777777765554
No 71
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.67 E-value=0.69 Score=20.14 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=12.4
Q ss_pred CCCCcEEeccCCcCCCc
Q 046123 1 MKSLKTLVLSGCLKLKK 17 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~ 17 (108)
+++|+.|++++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36788888888876665
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.56 E-value=0.41 Score=34.73 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=39.2
Q ss_pred EEEecCccccc-----cCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCCCCc
Q 046123 38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCSKLK 95 (108)
Q Consensus 38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~~~ 95 (108)
+++.+.|++.. +...+...+.|+.+.+..|.... -+-.++..+++|++||+++|.+..
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 88888777653 23336677788888887743221 123357788999999999986543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.04 E-value=0.75 Score=33.46 Aligned_cols=57 Identities=33% Similarity=0.466 Sum_probs=31.1
Q ss_pred EEEecCcc-ccccC-cc-cccCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCCCCC
Q 046123 38 SFILEGTA-IRGLP-AS-IELLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 38 ~l~l~~~~-~~~~p-~~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~~~ 94 (108)
.++++++. ++..- .. ...+++|+.+.+..|..+.. +-.....+++|++++++.|..+
T Consensus 247 ~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 247 SLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred ccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 66666655 43221 11 22367788887766654322 2222334566888888876554
No 74
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.76 E-value=1.3 Score=31.92 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=40.5
Q ss_pred CcEEeccCCcCCCcCCc---ccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCC-cccccccc
Q 046123 4 LKTLVLSGCLKLKKFPD---IVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNL-KSLPSTIN 78 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~---~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~-~~lp~~~~ 78 (108)
.+.+|+.+ +.+.+..+ .+..++.+ + .|+++.|.+.+..... -..++|+.+.+.+...- ........
T Consensus 73 v~elDL~~-N~iSdWseI~~ile~lP~l---~-----~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 73 VKELDLTG-NLISDWSEIGAILEQLPAL---T-----TLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhccc-chhccHHHHHHHHhcCccc---e-----EeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 34566666 45554432 23456666 6 7777777666433332 24566677766652211 11222334
Q ss_pred CCCCCCEEeecCC
Q 046123 79 GLRSLRTLYLSGC 91 (108)
Q Consensus 79 ~l~~L~~l~l~~~ 91 (108)
.++.++.++++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 4555555555554
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.49 E-value=1 Score=20.05 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=7.1
Q ss_pred EEEecCccccccCc
Q 046123 38 SFILEGTAIRGLPA 51 (108)
Q Consensus 38 ~l~l~~~~~~~~p~ 51 (108)
.|++++|+++++|+
T Consensus 6 ~L~vs~N~Lt~LPe 19 (26)
T smart00364 6 ELNVSNNQLTSLPE 19 (26)
T ss_pred eeecCCCccccCcc
Confidence 45555555555443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.18 E-value=0.14 Score=34.38 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=25.6
Q ss_pred cCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecC
Q 046123 55 LLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSG 90 (108)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~ 90 (108)
..++|+.|++++|+.+++.- ..+..+++|+.+.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34789999999998887642 3456667777776654
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.05 E-value=1.1 Score=32.00 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCcEEeccCCcCCCcCCccc----CCccccccccCcceeEEEecCc---ccc-ccCc-------ccccCCCCcEEeccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIV----GKSSQRKLQAGISSWSFILEGT---AIR-GLPA-------SIELLSGSVLLNLKD 66 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~----~~~~~L~~~~~~~~~~l~l~~~---~~~-~~p~-------~~~~l~~L~~L~l~~ 66 (108)
..+..++++||..-++.-.++ ..-.+| + ..+++.- +.+ .++. .+-+|++|+..+++.
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L---~-----vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNL---R-----VVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcce---e-----EeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 456778888865444433332 233444 4 4444431 122 2332 345789999999999
Q ss_pred CcCCcccccc----ccCCCCCCEEeecCCCCCcccc
Q 046123 67 CKNLKSLPST----INGLRSLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 67 ~~~~~~lp~~----~~~l~~L~~l~l~~~~~~~~~p 98 (108)
|-...+.|+. +++-..|.+|.+++| .++.+.
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 7665566653 456677899988874 444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.27 E-value=0.2 Score=21.41 Aligned_cols=10 Identities=50% Similarity=0.461 Sum_probs=3.7
Q ss_pred CCCEEeecCC
Q 046123 82 SLRTLYLSGC 91 (108)
Q Consensus 82 ~L~~l~l~~~ 91 (108)
+|++|++++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3444444443
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.58 E-value=4.4 Score=17.88 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=6.8
Q ss_pred EEEecCcccccc
Q 046123 38 SFILEGTAIRGL 49 (108)
Q Consensus 38 ~l~l~~~~~~~~ 49 (108)
.|+++.|.|+.+
T Consensus 6 ~L~L~~NkI~~I 17 (26)
T smart00365 6 ELDLSQNKIKKI 17 (26)
T ss_pred EEECCCCcccee
Confidence 566666655543
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.20 E-value=7.8 Score=17.09 Aligned_cols=9 Identities=56% Similarity=0.612 Sum_probs=4.5
Q ss_pred CCcEEeccC
Q 046123 3 SLKTLVLSG 11 (108)
Q Consensus 3 ~L~~L~l~~ 11 (108)
+|++|++++
T Consensus 3 ~L~~LdL~~ 11 (28)
T smart00368 3 SLRELDLSN 11 (28)
T ss_pred ccCEEECCC
Confidence 445555555
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=58.92 E-value=6.1 Score=29.66 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=4.6
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
..++++.+++|
T Consensus 401 ~~l~~lEL~n~ 411 (483)
T KOG4341|consen 401 EGLEVLELDNC 411 (483)
T ss_pred cccceeeecCC
Confidence 33444444443
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.37 E-value=18 Score=33.25 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.6
Q ss_pred eccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccc
Q 046123 8 VLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIR 47 (108)
Q Consensus 8 ~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~ 47 (108)
||++ |.+..+| ..+..+.+| + .|+|++|.+.
T Consensus 1 DLSn-N~LstLp~g~F~~L~sL---~-----~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISN-NKISTIEEGICANLCNL---S-----EIDLSGNPFE 32 (2740)
T ss_pred CCCC-CcCCccChHHhccCCCc---e-----EEEeeCCccc
Confidence 4666 6788887 566677788 8 9999998766
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.16 E-value=72 Score=29.79 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=25.6
Q ss_pred EecCccccccCcc-cccCCCCcEEeccCCcC
Q 046123 40 ILEGTAIRGLPAS-IELLSGSVLLNLKDCKN 69 (108)
Q Consensus 40 ~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~ 69 (108)
||++|+|+.+|+. |..+.+|+.|+|.+|+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 5789999988876 88899999999999654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.83 E-value=58 Score=25.45 Aligned_cols=10 Identities=20% Similarity=-0.067 Sum_probs=4.7
Q ss_pred CcEEeccCCc
Q 046123 59 SVLLNLKDCK 68 (108)
Q Consensus 59 L~~L~l~~~~ 68 (108)
|+.|-+.+|+
T Consensus 272 Leel~l~GNP 281 (585)
T KOG3763|consen 272 LEELVLEGNP 281 (585)
T ss_pred HHHeeecCCc
Confidence 4445555543
Done!