Query 046123
Match_columns 108
No_of_seqs 115 out of 1779
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1.1E-14 3.8E-19 101.1 9.8 70 38-107 233-303 (328)
2 4fcg_A Uncharacterized protein 99.6 1.7E-14 5.8E-19 100.1 9.6 99 1-108 182-280 (328)
3 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 88.8 10.4 99 1-108 56-156 (220)
4 3e6j_A Variable lymphocyte rec 99.5 5.9E-13 2E-17 88.1 10.3 95 2-107 64-161 (229)
5 2wfh_A SLIT homolog 2 protein 99.5 7.2E-13 2.5E-17 85.8 10.4 96 2-108 31-129 (193)
6 2v9t_B SLIT homolog 2 protein 99.5 7E-13 2.4E-17 87.3 10.4 96 2-107 56-154 (220)
7 1w8a_A SLIT protein; signaling 99.4 9.5E-13 3.2E-17 85.0 9.9 96 3-108 30-129 (192)
8 4b8c_D Glucose-repressible alc 99.4 3.1E-13 1.1E-17 102.5 8.4 96 2-108 224-319 (727)
9 4g8a_A TOLL-like receptor 4; l 99.4 1.3E-12 4.4E-17 95.8 9.6 96 3-108 53-151 (635)
10 1ogq_A PGIP-2, polygalacturona 99.4 5.8E-13 2E-17 91.7 7.3 96 2-105 76-173 (313)
11 3m19_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 84.7 10.7 95 3-107 84-181 (251)
12 2o6s_A Variable lymphocyte rec 99.4 5.7E-12 2E-16 81.8 10.7 96 2-107 52-150 (208)
13 1dce_A Protein (RAB geranylger 99.4 2.3E-12 8E-17 95.4 9.4 92 4-107 443-535 (567)
14 1p9a_G Platelet glycoprotein I 99.4 6.9E-12 2.4E-16 85.7 10.7 95 2-107 77-174 (290)
15 3e6j_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 83.2 10.0 96 2-108 40-138 (229)
16 2v9t_B SLIT homolog 2 protein 99.4 6.3E-12 2.1E-16 82.8 9.9 97 2-108 32-131 (220)
17 4g8a_A TOLL-like receptor 4; l 99.4 3.5E-12 1.2E-16 93.5 9.5 98 1-108 75-176 (635)
18 3m19_A Variable lymphocyte rec 99.4 9.1E-12 3.1E-16 83.1 10.7 97 2-108 59-158 (251)
19 2o6r_A Variable lymphocyte rec 99.4 1.3E-11 4.3E-16 78.4 10.7 96 2-108 28-127 (177)
20 4b8c_D Glucose-repressible alc 99.3 1.2E-12 4E-17 99.4 6.2 91 1-101 246-336 (727)
21 3rgz_A Protein brassinosteroid 99.3 5.6E-12 1.9E-16 95.7 9.7 97 3-107 443-540 (768)
22 3rgz_A Protein brassinosteroid 99.3 2.8E-12 9.6E-17 97.4 8.1 91 2-100 632-723 (768)
23 3rfs_A Internalin B, repeat mo 99.3 1.4E-11 4.9E-16 83.1 10.8 69 38-107 137-207 (272)
24 2ell_A Acidic leucine-rich nuc 99.3 6.2E-12 2.1E-16 79.1 8.3 78 3-90 25-104 (168)
25 2ell_A Acidic leucine-rich nuc 99.3 3.6E-12 1.2E-16 80.3 7.2 95 2-108 49-150 (168)
26 3g39_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 78.3 9.8 75 5-91 12-88 (170)
27 2v70_A SLIT-2, SLIT homolog 2 99.3 1.1E-11 3.9E-16 81.5 9.8 96 3-108 33-132 (220)
28 2o6s_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 79.4 10.7 97 2-108 28-127 (208)
29 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 78.9 6.7 79 3-91 18-98 (149)
30 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 80.7 5.0 96 1-108 41-143 (149)
31 4ezg_A Putative uncharacterize 99.3 8E-12 2.7E-16 80.7 8.7 55 38-92 92-147 (197)
32 1ogq_A PGIP-2, polygalacturona 99.3 2.3E-12 7.8E-17 88.7 6.4 99 2-108 50-152 (313)
33 3vq2_A TLR4, TOLL-like recepto 99.3 8.7E-12 3E-16 91.7 9.9 97 2-108 56-156 (606)
34 3rfs_A Internalin B, repeat mo 99.3 2.2E-11 7.4E-16 82.2 10.7 96 2-107 85-183 (272)
35 1w8a_A SLIT protein; signaling 99.3 2.1E-11 7.1E-16 78.7 10.0 93 5-108 11-105 (192)
36 1ozn_A Reticulon 4 receptor; N 99.3 2.1E-11 7.3E-16 82.4 10.4 67 38-105 133-201 (285)
37 2o6q_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 81.7 10.7 13 78-90 154-166 (270)
38 1a9n_A U2A', U2A'; complex (nu 99.3 4.6E-12 1.6E-16 80.5 6.5 78 3-91 43-123 (176)
39 4ezg_A Putative uncharacterize 99.3 6.6E-12 2.2E-16 81.1 7.2 96 2-108 44-139 (197)
40 2r9u_A Variable lymphocyte rec 99.3 2.7E-11 9.1E-16 77.3 9.8 78 4-91 35-115 (174)
41 3vq2_A TLR4, TOLL-like recepto 99.3 1.3E-11 4.5E-16 90.8 9.4 98 2-107 424-523 (606)
42 3v47_A TOLL-like receptor 5B a 99.3 2.2E-11 7.6E-16 86.8 10.2 97 2-107 299-397 (455)
43 2wfh_A SLIT homolog 2 protein 99.3 3.3E-11 1.1E-15 77.9 10.1 92 5-108 13-105 (193)
44 1p9a_G Platelet glycoprotein I 99.3 2.1E-11 7.3E-16 83.2 9.6 96 2-108 55-151 (290)
45 1dce_A Protein (RAB geranylger 99.3 1.2E-11 4.1E-16 91.6 8.8 87 1-99 462-550 (567)
46 2o6q_A Variable lymphocyte rec 99.3 4.5E-11 1.6E-15 80.5 10.8 96 2-108 109-208 (270)
47 2id5_A Lingo-1, leucine rich r 99.3 2.6E-11 8.9E-16 87.1 10.1 69 38-106 84-153 (477)
48 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-11 5.4E-16 78.0 7.9 95 2-108 19-116 (176)
49 1ozn_A Reticulon 4 receptor; N 99.3 5E-11 1.7E-15 80.6 10.3 13 78-90 150-162 (285)
50 2z66_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 82.1 9.5 65 38-103 179-245 (306)
51 3o6n_A APL1; leucine-rich repe 99.3 4.3E-11 1.5E-15 84.1 10.2 98 1-108 68-168 (390)
52 2z63_A TOLL-like receptor 4, v 99.3 2.7E-11 9.4E-16 88.2 9.5 97 2-108 52-152 (570)
53 3v47_A TOLL-like receptor 5B a 99.3 3.8E-11 1.3E-15 85.5 10.0 99 2-108 275-374 (455)
54 2z62_A TOLL-like receptor 4, v 99.3 4E-11 1.4E-15 80.7 9.6 95 3-107 53-151 (276)
55 1ziw_A TOLL-like receptor 3; i 99.3 2.7E-11 9.3E-16 90.3 9.3 95 3-107 50-147 (680)
56 3oja_B Anopheles plasmodium-re 99.3 4.3E-11 1.5E-15 88.6 10.2 98 1-108 74-174 (597)
57 2z62_A TOLL-like receptor 4, v 99.3 5.1E-11 1.8E-15 80.2 9.6 97 3-108 29-127 (276)
58 2r9u_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 76.2 8.9 91 5-108 15-108 (174)
59 2z80_A TOLL-like receptor 2, v 99.2 1.1E-11 3.7E-16 86.2 6.4 95 2-106 76-175 (353)
60 2z63_A TOLL-like receptor 4, v 99.2 4.2E-11 1.4E-15 87.3 9.6 99 2-108 421-521 (570)
61 2z66_A Variable lymphocyte rec 99.2 1.5E-11 5.2E-16 83.8 6.8 70 38-107 130-201 (306)
62 4eco_A Uncharacterized protein 99.2 1E-11 3.6E-16 92.7 6.2 98 1-108 205-333 (636)
63 4eco_A Uncharacterized protein 99.2 4.9E-11 1.7E-15 89.0 9.8 89 3-101 489-585 (636)
64 2z81_A CD282 antigen, TOLL-lik 99.2 3.9E-11 1.3E-15 87.3 9.0 95 3-107 27-125 (549)
65 3g39_A Variable lymphocyte rec 99.2 7.4E-11 2.5E-15 74.8 9.2 83 2-94 30-115 (170)
66 2xot_A Amphoterin-induced prot 99.2 5.6E-11 1.9E-15 83.2 9.5 79 3-90 65-145 (361)
67 2xwt_C Thyrotropin receptor; s 99.2 2.9E-11 1E-15 79.9 7.6 78 4-90 33-114 (239)
68 2xot_A Amphoterin-induced prot 99.2 6.1E-11 2.1E-15 83.0 9.6 96 3-108 40-139 (361)
69 3j0a_A TOLL-like receptor 5; m 99.2 4.5E-11 1.5E-15 91.6 9.4 98 2-107 48-150 (844)
70 2z80_A TOLL-like receptor 2, v 99.2 3.3E-11 1.1E-15 83.8 7.8 94 3-107 53-151 (353)
71 2z81_A CD282 antigen, TOLL-lik 99.2 3.1E-11 1.1E-15 87.8 7.9 98 1-107 49-150 (549)
72 1wwl_A Monocyte differentiatio 99.2 2.5E-11 8.4E-16 83.4 6.9 86 2-96 95-188 (312)
73 3zyj_A Leucine-rich repeat-con 99.2 8E-11 2.7E-15 84.1 9.8 70 38-107 211-281 (440)
74 2z7x_B TOLL-like receptor 1, v 99.2 3.6E-11 1.2E-15 87.1 7.9 95 2-108 21-118 (520)
75 3zyj_A Leucine-rich repeat-con 99.2 1.2E-10 4.1E-15 83.2 10.4 99 1-108 159-258 (440)
76 3zyi_A Leucine-rich repeat-con 99.2 9.6E-11 3.3E-15 84.0 9.8 70 38-107 222-292 (452)
77 3t6q_A CD180 antigen; protein- 99.2 1.2E-10 4E-15 85.7 10.1 96 3-107 34-131 (606)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 9.9E-11 3.4E-15 85.8 9.2 95 2-108 52-149 (562)
79 2id5_A Lingo-1, leucine rich r 99.2 1.8E-10 6E-15 82.8 9.8 97 2-108 32-131 (477)
80 3zyi_A Leucine-rich repeat-con 99.2 2.2E-10 7.4E-15 82.1 10.0 79 3-91 76-157 (452)
81 2ifg_A High affinity nerve gro 99.2 2.2E-10 7.6E-15 79.3 9.7 82 6-98 12-96 (347)
82 4ecn_A Leucine-rich repeat pro 99.2 1.6E-10 5.4E-15 89.4 9.8 89 3-101 729-825 (876)
83 3o53_A Protein LRIM1, AGAP0063 99.2 1.4E-11 4.9E-16 84.7 3.5 94 2-107 144-239 (317)
84 3j0a_A TOLL-like receptor 5; m 99.2 1.8E-10 6.3E-15 88.2 9.9 98 2-108 24-126 (844)
85 2o6r_A Variable lymphocyte rec 99.2 2.5E-10 8.4E-15 72.4 8.9 87 1-97 51-140 (177)
86 3t6q_A CD180 antigen; protein- 99.2 3.2E-10 1.1E-14 83.4 10.6 82 2-92 278-361 (606)
87 2xwt_C Thyrotropin receptor; s 99.2 1.3E-10 4.5E-15 76.8 7.7 98 1-108 54-158 (239)
88 4ecn_A Leucine-rich repeat pro 99.1 2.3E-10 7.8E-15 88.6 10.0 97 2-108 697-809 (876)
89 1xku_A Decorin; proteoglycan, 99.1 4.1E-10 1.4E-14 77.5 10.1 80 3-92 193-274 (330)
90 1ziw_A TOLL-like receptor 3; i 99.1 2.6E-10 8.7E-15 85.0 9.6 97 2-108 25-124 (680)
91 3o6n_A APL1; leucine-rich repe 99.1 4E-10 1.4E-14 79.2 9.5 86 1-95 92-179 (390)
92 3oja_B Anopheles plasmodium-re 99.1 3.6E-10 1.2E-14 83.7 9.5 86 1-95 98-185 (597)
93 1xeu_A Internalin C; cellular 99.1 6.7E-10 2.3E-14 74.8 10.0 52 38-92 110-161 (263)
94 2ft3_A Biglycan; proteoglycan, 99.1 4.9E-10 1.7E-14 77.2 9.5 77 3-91 55-133 (332)
95 1xku_A Decorin; proteoglycan, 99.1 5.1E-10 1.8E-14 77.0 9.3 63 3-75 53-117 (330)
96 2z7x_B TOLL-like receptor 1, v 99.1 2.3E-10 8E-15 82.9 7.8 84 1-95 44-129 (520)
97 1h6u_A Internalin H; cell adhe 99.1 5.9E-10 2E-14 76.5 9.4 9 3-11 64-72 (308)
98 4fmz_A Internalin; leucine ric 99.1 7.7E-10 2.6E-14 76.4 9.7 76 3-91 67-142 (347)
99 1h6t_A Internalin B; cell adhe 99.1 8.7E-10 3E-14 75.2 9.6 14 77-90 174-187 (291)
100 3o53_A Protein LRIM1, AGAP0063 99.1 3E-10 1E-14 78.1 7.3 82 2-94 169-250 (317)
101 1xeu_A Internalin C; cellular 99.1 8.7E-10 3E-14 74.3 9.3 78 3-92 42-139 (263)
102 1h6t_A Internalin B; cell adhe 99.1 1.1E-09 3.8E-14 74.7 9.9 92 1-107 89-180 (291)
103 4fmz_A Internalin; leucine ric 99.1 6.2E-10 2.1E-14 76.8 8.7 86 2-98 243-328 (347)
104 1h6u_A Internalin H; cell adhe 99.1 8.5E-10 2.9E-14 75.7 9.3 76 2-90 107-182 (308)
105 2ifg_A High affinity nerve gro 99.1 6.7E-10 2.3E-14 76.9 8.8 84 2-94 31-116 (347)
106 1wwl_A Monocyte differentiatio 99.1 1.3E-10 4.5E-15 79.7 4.6 30 38-67 153-183 (312)
107 3oja_A Leucine-rich immune mol 99.0 5.5E-10 1.9E-14 81.2 7.5 67 38-107 173-239 (487)
108 2ft3_A Biglycan; proteoglycan, 99.0 1.6E-09 5.5E-14 74.6 9.5 79 3-91 194-274 (332)
109 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1E-09 3.5E-14 80.5 8.8 82 1-94 75-159 (562)
110 3oja_A Leucine-rich immune mol 99.0 1.4E-10 4.9E-15 84.2 4.1 92 2-104 169-261 (487)
111 1ds9_A Outer arm dynein; leuci 99.0 5.7E-12 2E-16 81.5 -3.3 78 2-91 48-125 (198)
112 1o6v_A Internalin A; bacterial 99.0 1.7E-09 5.7E-14 77.8 8.3 78 2-92 68-145 (466)
113 1m9s_A Internalin B; cell inva 99.0 4.2E-09 1.4E-13 78.6 10.3 14 77-90 171-184 (605)
114 3bz5_A Internalin-J, INLJ; leu 99.0 3E-09 1E-13 76.8 9.1 76 2-92 42-117 (457)
115 1ds9_A Outer arm dynein; leuci 99.0 7.6E-12 2.6E-16 80.9 -4.4 86 2-98 70-157 (198)
116 4glp_A Monocyte differentiatio 98.9 1E-09 3.6E-14 75.1 5.2 90 2-101 145-244 (310)
117 1m9s_A Internalin B; cell inva 98.9 8.3E-09 2.8E-13 77.0 9.9 92 1-107 86-177 (605)
118 4glp_A Monocyte differentiatio 98.9 5.8E-09 2E-13 71.4 8.3 85 2-94 91-182 (310)
119 1o6v_A Internalin A; bacterial 98.9 7.6E-09 2.6E-13 74.3 9.2 28 38-66 269-296 (466)
120 3bz5_A Internalin-J, INLJ; leu 98.9 1.1E-08 3.9E-13 73.8 10.0 76 1-92 63-138 (457)
121 3cvr_A Invasion plasmid antige 98.9 1.2E-09 4E-14 81.2 4.7 59 38-100 184-249 (571)
122 2ast_B S-phase kinase-associat 98.9 1.9E-09 6.5E-14 74.0 4.6 54 38-91 199-257 (336)
123 4ay9_X Follicle-stimulating ho 98.9 1.3E-08 4.4E-13 70.8 8.7 81 3-92 31-115 (350)
124 3cvr_A Invasion plasmid antige 98.9 9.2E-09 3.1E-13 76.4 8.1 86 2-107 140-232 (571)
125 3g06_A SSPH2 (leucine-rich rep 98.8 5.1E-09 1.7E-13 78.5 5.8 57 38-98 245-301 (622)
126 4ay9_X Follicle-stimulating ho 98.8 1.7E-08 5.7E-13 70.3 7.9 93 5-108 12-107 (350)
127 2ast_B S-phase kinase-associat 98.8 2E-09 6.8E-14 73.9 3.0 54 38-91 122-178 (336)
128 1jl5_A Outer protein YOPM; leu 98.8 3E-08 1E-12 71.5 8.8 73 3-90 132-204 (454)
129 1jl5_A Outer protein YOPM; leu 98.8 1.1E-08 3.7E-13 73.8 6.3 86 3-103 318-420 (454)
130 3sb4_A Hypothetical leucine ri 98.8 5.4E-08 1.8E-12 67.1 9.0 94 2-108 226-324 (329)
131 3g06_A SSPH2 (leucine-rich rep 98.7 5.9E-08 2E-12 72.7 9.6 63 38-108 225-287 (622)
132 2ca6_A RAN GTPase-activating p 98.7 4.3E-09 1.5E-13 73.9 2.0 17 50-66 237-253 (386)
133 2ca6_A RAN GTPase-activating p 98.6 1.9E-08 6.4E-13 70.6 2.5 86 2-96 159-259 (386)
134 3goz_A Leucine-rich repeat-con 98.3 1.4E-07 4.7E-12 65.8 0.9 56 3-67 23-90 (362)
135 1z7x_W Ribonuclease inhibitor; 98.3 1.7E-07 5.8E-12 66.7 0.8 83 3-94 314-411 (461)
136 3rw6_A Nuclear RNA export fact 98.2 1.8E-06 6E-11 58.8 5.1 58 38-97 174-236 (267)
137 1z7x_W Ribonuclease inhibitor; 98.2 1.3E-07 4.6E-12 67.2 -0.5 9 3-11 200-208 (461)
138 3e4g_A ATP synthase subunit S, 98.2 1E-06 3.4E-11 56.6 3.6 85 3-96 62-154 (176)
139 3sb4_A Hypothetical leucine ri 98.1 1.3E-05 4.5E-10 55.1 8.4 66 38-107 230-299 (329)
140 3goz_A Leucine-rich repeat-con 98.1 5.9E-07 2E-11 62.6 1.0 84 7-98 3-97 (362)
141 3ogk_B Coronatine-insensitive 98.0 4.2E-06 1.5E-10 61.2 4.3 20 73-92 285-304 (592)
142 3ogk_B Coronatine-insensitive 98.0 2.6E-06 8.9E-11 62.3 2.9 51 38-89 196-251 (592)
143 2p1m_B Transport inhibitor res 98.0 4.5E-07 1.5E-11 66.3 -1.2 12 80-91 210-221 (594)
144 3rw6_A Nuclear RNA export fact 97.9 1.2E-05 4E-10 54.7 4.1 77 1-87 169-257 (267)
145 2p1m_B Transport inhibitor res 97.8 4.4E-06 1.5E-10 61.1 1.6 55 38-92 109-167 (594)
146 3un9_A NLR family member X1; l 97.8 7.6E-06 2.6E-10 57.7 1.6 56 38-93 187-251 (372)
147 3un9_A NLR family member X1; l 97.7 3.4E-06 1.2E-10 59.5 -1.0 56 38-94 159-224 (372)
148 3e4g_A ATP synthase subunit S, 97.5 9.9E-05 3.4E-09 47.2 3.5 72 36-107 63-141 (176)
149 1io0_A Tropomodulin; LRR prote 97.5 5.6E-05 1.9E-09 48.2 2.3 83 2-93 36-135 (185)
150 4fdw_A Leucine rich hypothetic 97.4 0.00093 3.2E-08 47.5 8.8 36 53-91 319-355 (401)
151 4fdw_A Leucine rich hypothetic 97.4 0.0011 3.7E-08 47.2 8.7 15 76-90 266-280 (401)
152 1io0_A Tropomodulin; LRR prote 97.4 0.00014 4.9E-09 46.2 3.6 81 2-92 65-162 (185)
153 3rfe_A Platelet glycoprotein I 97.2 0.0011 3.7E-08 40.1 5.8 53 6-69 12-67 (130)
154 4h09_A Hypothetical leucine ri 97.0 0.0073 2.5E-07 41.9 9.3 50 38-89 290-341 (379)
155 4h09_A Hypothetical leucine ri 97.0 0.0052 1.8E-07 42.6 8.3 93 2-108 240-336 (379)
156 4gt6_A Cell surface protein; l 96.9 0.0089 3E-07 41.9 9.4 35 53-89 307-342 (394)
157 3rfe_A Platelet glycoprotein I 96.9 0.0024 8.2E-08 38.5 5.5 53 38-93 12-67 (130)
158 4fs7_A Uncharacterized protein 96.9 0.0026 8.7E-08 44.6 6.4 90 3-107 298-390 (394)
159 2ra8_A Uncharacterized protein 96.7 0.001 3.5E-08 46.8 3.1 13 79-91 305-317 (362)
160 2ra8_A Uncharacterized protein 96.5 0.0036 1.2E-07 44.0 4.8 11 2-12 172-182 (362)
161 4gt6_A Cell surface protein; l 96.3 0.025 8.4E-07 39.6 8.0 76 3-91 289-367 (394)
162 4fs7_A Uncharacterized protein 95.3 0.075 2.6E-06 37.1 7.3 66 38-108 301-369 (394)
163 1pgv_A TMD-1, tropomodulin TMD 94.1 0.041 1.4E-06 35.6 3.2 81 2-91 41-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 85.5 0.27 9.4E-06 31.7 1.1 81 2-91 70-167 (197)
165 2lz0_A Uncharacterized protein 79.0 3.3 0.00011 23.4 4.0 44 14-66 7-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=1.1e-14 Score=101.06 Aligned_cols=70 Identities=30% Similarity=0.449 Sum_probs=32.3
Q ss_pred EEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.|++++|.+. .+|..+..+++|+.|++++|+..+.+|..++.+++|+++++++|+..+.+|..+++++++
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 4444444333 333334444444444444444444444444444555555555544445555444444433
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=1.7e-14 Score=100.11 Aligned_cols=99 Identities=23% Similarity=0.445 Sum_probs=91.4
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++|++|++++ +.++.+|..+..+.+| + .|++++|.+..+|+.+..+++|+.|++++|+..+.+|..++.+
T Consensus 182 l~~L~~L~L~~-n~l~~lp~~l~~l~~L---~-----~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 182 LVNLQSLRLEW-TGIRSLPASIANLQNL---K-----SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp STTCCEEEEEE-ECCCCCCGGGGGCTTC---C-----EEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred CCCCCEEECcC-CCcCcchHhhcCCCCC---C-----EEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 46899999999 5788999889999999 9 9999999999999999999999999999999899999999999
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|++|++++|+..+.+|..++++++|+
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 9999999999999999999888888774
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.6e-13 Score=88.76 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=69.0
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 78 (108)
+++|++|++++ +.++.++ ..+..+.+| + .|++++|.+..+++. +..+++|+.|++++|......|..|.
T Consensus 56 l~~L~~L~L~~-N~i~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 56 LPQLRKINFSN-NKITDIEEGAFEGASGV---N-----EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp CTTCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred CCCCCEEECCC-CcCCEECHHHhCCCCCC---C-----EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 35677777777 4566665 366777777 7 888888888766654 77788888888888543333456777
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.+++|++|++++|......|..|..+++|+
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 888888888888665555577777776653
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=5.9e-13 Score=88.12 Aligned_cols=95 Identities=25% Similarity=0.322 Sum_probs=58.4
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++ +.++.+| ..+..+.+| + .|++++|+++.+++. +..+++|+.|++++ +.+..+|..+..
T Consensus 64 ~~L~~L~L~~-N~l~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~ 133 (229)
T 3e6j_A 64 INLKELYLGS-NQLGALPVGVFDSLTQL---T-----VLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIER 133 (229)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGG
T ss_pred cCCcEEECCC-CCCCCcChhhcccCCCc---C-----EEECCCCcCCccChhHhCcchhhCeEeccC-CcccccCccccc
Confidence 4566666666 3455555 334556666 6 777777776666544 56677777777776 345667776777
Q ss_pred CCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVP-ETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p-~~~~~l~~L 107 (108)
+++|++|++++|.. ..+| ..|..+++|
T Consensus 134 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 134 LTHLTHLALDQNQL-KSIPHGAFDRLSSL 161 (229)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcC-CccCHHHHhCCCCC
Confidence 77777777777543 3343 445555554
No 5
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=7.2e-13 Score=85.82 Aligned_cols=96 Identities=26% Similarity=0.388 Sum_probs=76.4
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 79 (108)
+++++|++++ +.++.+|..+..+.+| + .|++++|.++.+++ .|.++++|+.|++++| .+..++ .+|.+
T Consensus 31 ~~l~~L~L~~-n~i~~ip~~~~~l~~L---~-----~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~ 100 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLVPKELSNYKHL---T-----LIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDG 100 (193)
T ss_dssp TTCCEEECCS-SCCCSCCGGGGGCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT
T ss_pred CCCCEEECCC-CcCchhHHHhhcccCC---C-----EEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCC
Confidence 3688899999 5788888888888889 8 99999999997765 4899999999999995 466655 47889
Q ss_pred CCCCCEEeecCCCCCccccc-CcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPE-TLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~-~~~~l~~L~ 108 (108)
+++|++|++++|.. ..+|. .|..+++|+
T Consensus 101 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 101 LKSLRLLSLHGNDI-SVVPEGAFNDLSALS 129 (193)
T ss_dssp CTTCCEEECCSSCC-CBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCC-CeeChhhhhcCcccc
Confidence 99999999999654 45554 577776653
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=7e-13 Score=87.34 Aligned_cols=96 Identities=26% Similarity=0.311 Sum_probs=53.9
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccc-ccccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSL-PSTIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~ 78 (108)
++|++|++++ +.++.+ |..+..+.+| + +|++++|++..+|+. +.++++|+.|++++|. +..+ |..|.
T Consensus 56 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~ 125 (220)
T 2v9t_B 56 KKLRRIDLSN-NQISELAPDAFQGLRSL---N-----SLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQ 125 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTTTTTCSSC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCEEECCC-CcCCCcCHHHhhCCcCC---C-----EEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcC
Confidence 3556666666 344444 4555555666 5 666666666666554 4566666666666643 3333 44566
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.+++|++|++++|......+..|..+++|
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 66666777776654433333445555544
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=9.5e-13 Score=85.01 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCcEEeccCCcCCCcCCc--ccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccc-ccccc
Q 046123 3 SLKTLVLSGCLKLKKFPD--IVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSL-PSTIN 78 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~--~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~ 78 (108)
++++|++++ +.++.++. .+..+.+| + +|++++|+++.+ |..+..+++|+.|++++|. +..+ |..|+
T Consensus 30 ~l~~L~l~~-n~i~~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 99 (192)
T 1w8a_A 30 HTTELLLND-NELGRISSDGLFGRLPHL---V-----KLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFL 99 (192)
T ss_dssp TCSEEECCS-CCCCSBCCSCSGGGCTTC---C-----EEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSST
T ss_pred CCCEEECCC-CcCCccCCccccccCCCC---C-----EEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhc
Confidence 578888888 46777764 36778888 8 999999998866 5568889999999999854 5554 44688
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++++|++|++++|......|..|+.+++|+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 889999999999776666677787777664
No 8
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=3.1e-13 Score=102.48 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
..|+.|++++ +.+..+|..+..+.+| + .|++++|.++.+|..+..+++|+.|++++| .+..+|+.|+.++
T Consensus 224 ~~L~~L~Ls~-n~l~~l~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 224 QLWHALDLSN-LQIFNISANIFKYDFL---T-----RLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp CCCCEEECTT-SCCSCCCGGGGGCCSC---S-----CCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred CCCcEEECCC-CCCCCCChhhcCCCCC---C-----EEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 5678888888 4677888777778888 8 888888888888888888888888888884 4668888888888
Q ss_pred CCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 82 SLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+|++|++++| .+..+|..|+++++|+
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQ 319 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCC
T ss_pred CCCEEECCCC-CCCccChhhhcCCCcc
Confidence 8888888885 4567888788877764
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=1.3e-12 Score=95.77 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
++++|++++ +.++.+| ..+..+.+| + +|++++|+++.+++. |.++++|++|++++| .+..+|+ +|.+
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L---~-----~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPEL---Q-----VLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCC---C-----EEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC
Confidence 567777777 4666665 456777777 7 777777777766543 777777777777774 4555554 4667
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+++|++|++++|+.....+..|+++++|+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 77777777777544333333466666553
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=5.8e-13 Score=91.71 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCcEEeccC-CcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSG-CLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~-~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++ |+....+|..+..+.+| + +|++++|.+. .+|..+..+++|+.|++++|.....+|..++.
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L---~-----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQL---H-----YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTC---S-----EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCC---C-----EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 4566666663 33333456666666666 6 6666666666 55556666666667766664433356666666
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVE 105 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~ 105 (108)
+++|+++++++|.....+|..++.+.
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhh
Confidence 66677777766555446666555554
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=4.2e-12 Score=84.73 Aligned_cols=95 Identities=25% Similarity=0.374 Sum_probs=47.5
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
+|++|++++ +.++.+| ..+..+.+| + +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++.
T Consensus 84 ~L~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 153 (251)
T 3m19_A 84 ELGTLGLAN-NQLASLPLGVFDHLTQL---D-----KLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK 153 (251)
T ss_dssp TCCEEECTT-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred cCCEEECCC-CcccccChhHhcccCCC---C-----EEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCc
Confidence 444444444 2333333 233444444 4 555555555555443 455566666666653 3444443 4556
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+++|++|++++|......+..+..+++|
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 6666666666644333333345555444
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=5.7e-12 Score=81.79 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
++|++|++++ +.++.+|. .+..+.+| + +|++++|++..+++. +..+++|+.|++++| .+..+|+ .+.
T Consensus 52 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 121 (208)
T 2o6s_A 52 TSLTQLYLGG-NKLQSLPNGVFNKLTSL---T-----YLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFD 121 (208)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCcEEECCC-CccCccChhhcCCCCCc---C-----EEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhc
Confidence 3455555555 34444442 23445555 5 666666666555443 455666666666653 3444443 345
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.+++|+++++++|......+..++.+++|
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 56666666666644332222334544444
No 13
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=2.3e-12 Score=95.44 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=51.4
Q ss_pred CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCC
Q 046123 4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSL 83 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 83 (108)
|++|++++ +.++.+|. ++.+.+| + .|++++|.+..+|..++.+++|+.|++++| .+..+| .++.+++|
T Consensus 443 L~~L~Ls~-n~l~~lp~-~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 443 VRVLHLAH-KDLTVLCH-LEQLLLV---T-----HLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRL 510 (567)
T ss_dssp CSEEECTT-SCCSSCCC-GGGGTTC---C-----EEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSC
T ss_pred ceEEEecC-CCCCCCcC-ccccccC---c-----EeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCC
Confidence 55566666 34555554 5555556 5 666666666666655666666666666653 344455 45566666
Q ss_pred CEEeecCCCCCccc-ccCcCCCCCC
Q 046123 84 RTLYLSGCSKLKNV-PETLGKVESL 107 (108)
Q Consensus 84 ~~l~l~~~~~~~~~-p~~~~~l~~L 107 (108)
++|++++|...... |..++.+++|
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCC
Confidence 66666664433332 5555555544
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.37 E-value=6.9e-12 Score=85.68 Aligned_cols=95 Identities=26% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccc-cccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
++|++|++++ +.++.+|..+..+.+| + .|++++|++..+|+ .|..+++|+.|++++| .+..+|+ .+..
T Consensus 77 ~~L~~L~Ls~-N~l~~l~~~~~~l~~L---~-----~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 146 (290)
T 1p9a_G 77 PVLGTLDLSH-NQLQSLPLLGQTLPAL---T-----VLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP 146 (290)
T ss_dssp TTCCEEECCS-SCCSSCCCCTTTCTTC---C-----EEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred CcCCEEECCC-CcCCcCchhhccCCCC---C-----EEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhccc
Confidence 4566666666 4566666655666666 6 66666666665553 3666666666666663 3444443 3455
Q ss_pred CCCCCEEeecCCCCCccccc-CcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPE-TLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~-~~~~l~~L 107 (108)
+++|++|++++|. +..+|. .|..+++|
T Consensus 147 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 147 TPKLEKLSLANNN-LTELPAGLLNGLENL 174 (290)
T ss_dssp CTTCCEEECTTSC-CSCCCTTTTTTCTTC
T ss_pred ccCCCEEECCCCc-CCccCHHHhcCcCCC
Confidence 6666666666643 333432 34444443
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=6.1e-12 Score=83.21 Aligned_cols=96 Identities=21% Similarity=0.392 Sum_probs=79.0
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
++|++|++++ +.+..+ |..+..+.+| + .|++++|++..+|.. +..+++|+.|++++| .+..+|+ .+.
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L---~-----~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINL---K-----ELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCC---c-----EEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhC
Confidence 4689999999 466666 5778888999 9 999999999988765 789999999999995 5667665 468
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.+++|++|++++|. +..+|..+..+++|+
T Consensus 110 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTELPRGIERLTHLT 138 (229)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTGGGCTTCS
T ss_pred cchhhCeEeccCCc-ccccCcccccCCCCC
Confidence 89999999999954 568888887777664
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=6.3e-12 Score=82.76 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccccc-cc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPST-IN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~ 78 (108)
++++.|++++ +.++.++ ..+..+.+| + .|++++|.+..+ |..|.++++|+.|++++ +.+..+|+. |.
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~~~~~l~~L---~-----~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPGAFSPYKKL---R-----RIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFE 101 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTSSTTCTTC---C-----EEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTT
T ss_pred cCCCEEECCC-CcCCCcCHhHhhCCCCC---C-----EEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHcc
Confidence 3688999999 5677776 477888899 9 999999999976 66799999999999999 567777765 68
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++++|++|++++|......|..|+.+++|+
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 899999999999776666677788877764
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=3.5e-12 Score=93.46 Aligned_cols=98 Identities=26% Similarity=0.328 Sum_probs=78.8
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TI 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~ 77 (108)
+++|++|++++ +.++.++ ..+..+.+| + +|++++|+++.+|+. |.++++|+.|++++| .+..+|+ .|
T Consensus 75 l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L---~-----~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~ 144 (635)
T 4g8a_A 75 FPELQVLDLSR-CEIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI 144 (635)
T ss_dssp CTTCCEEECTT-CCCCEECTTTTTTCTTC---C-----EEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCC
T ss_pred CCCCCEEECCC-CcCCCcChhHhcCCCCC---C-----EEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhh
Confidence 46899999999 5788876 567889999 9 999999999988765 899999999999995 5666665 68
Q ss_pred cCCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLK-NVPETLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~ 108 (108)
+++++|++|++++|.... ..|..++.+++|+
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred hcCcccCeeccccCccccCCCchhhccchhhh
Confidence 999999999999976543 4566677766654
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=9.1e-12 Score=83.11 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-cc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-IN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~ 78 (108)
++|++|++++ +.++.++ ..+..+.+| + +|++++|.+..+++. +..+++|+.|++++| .+..+|+. ++
T Consensus 59 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 128 (251)
T 3m19_A 59 TKLTWLNLDY-NQLQTLSAGVFDDLTEL---G-----TLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFD 128 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTTTCTTC---C-----EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCEEECCC-CcCCccCHhHhccCCcC---C-----EEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhc
Confidence 4567777777 3455543 445666667 6 777777777766544 667777777777774 45555543 56
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.+++|++|++++|......+..|+.+++|+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 777888888887544333333566666553
No 19
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=1.3e-11 Score=78.41 Aligned_cols=96 Identities=29% Similarity=0.464 Sum_probs=72.2
Q ss_pred CCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+++++|++++ +.++.++. .+..+.+| + +|++++|.+..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELES-NKLQSLPHGVFDKLTQL---T-----KLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD 97 (177)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEeCC-CcccEeCHHHhcCcccc---c-----EEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhh
Confidence 4688899998 46777764 45778888 8 999999999877765 688899999999984 5666665 467
Q ss_pred CCCCCCEEeecCCCCCccccc-CcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPE-TLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~-~~~~l~~L~ 108 (108)
.+++|+++++++|.. ..+|. .+..+++|+
T Consensus 98 ~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 98 KLTQLKELALDTNQL-KSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TCTTCCEEECCSSCC-SCCCTTTTTTCTTCC
T ss_pred CCcccCEEECcCCcc-eEeCHHHhcCCcccC
Confidence 888999999998654 45554 456666653
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.2e-12 Score=99.38 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=81.6
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++|++|++++ +.++.+|..+..+.+| + +|++++|.++.+|..++.+++|+.|++++| .++.+|..|+.+
T Consensus 246 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l 315 (727)
T 4b8c_D 246 YDFLTRLYLNG-NSLTELPAEIKNLSNL---R-----VLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNL 315 (727)
T ss_dssp CCSCSCCBCTT-SCCSCCCGGGGGGTTC---C-----EEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSC
T ss_pred CCCCCEEEeeC-CcCcccChhhhCCCCC---C-----EEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcC
Confidence 46899999999 5788999989999999 9 999999999999999999999999999995 678999999999
Q ss_pred CCCCEEeecCCCCCcccccCc
Q 046123 81 RSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~ 101 (108)
++|++|++++|...+.+|..+
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHH
T ss_pred CCccEEeCCCCccCCCChHHH
Confidence 999999999988776666544
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=5.6e-12 Score=95.71 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=51.6
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
+|++|++++|...+.+|..+..+.+| + .|++++|++. .+|..+..+++|+.|++++|...+.+|.+++.++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L---~-----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTL---E-----TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTC---C-----EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCc---e-----EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 44445554433222344444444555 5 5555555555 4455555566666666665444445555555666
Q ss_pred CCCEEeecCCCCCcccccCcCCCCCC
Q 046123 82 SLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+|+++++++|...+.+|..++++++|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCC
Confidence 66666666655555555555555544
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=2.8e-12 Score=97.35 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=81.5
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++|+.|++++|...+.+|..++.+..| + .|++++|+++ .+|+.++.+++|+.|++++|+..+.+|..++.+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L---~-----~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYL---F-----ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTC---C-----EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ccccEEECcCCcccccCCHHHhccccC---C-----EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 568899999976556789999999999 9 9999999999 789899999999999999987777899999999
Q ss_pred CCCCEEeecCCCCCcccccC
Q 046123 81 RSLRTLYLSGCSKLKNVPET 100 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~ 100 (108)
++|+++++++|+..+.+|..
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSEEECCSSEEEEECCSS
T ss_pred CCCCEEECcCCcccccCCCc
Confidence 99999999999888888853
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=1.4e-11 Score=83.07 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=30.7
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+|++++|.+..+++. +..+++|+.|++++|. +..+|+ .++.+++|+++++++|......|..++.+++|
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 555555544444333 3445555555555532 333332 23445555555555544333333334444443
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=6.2e-12 Score=79.15 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++++|++++| .++ .+|..+..+.+| + +|++++|.+..+ ..+..+++|+.|++++|.....+|..++.+
T Consensus 25 ~L~~L~l~~n-~l~~~~i~~~~~~l~~L---~-----~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 25 AVRELVLDNC-KSNDGKIEGLTAEFVNL---E-----FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp SCSEEECCSC-BCBTTBCSSCCGGGGGC---C-----EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cCCEEECCCC-CCChhhHHHHHHhCCCC---C-----EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 4556666653 343 455444555555 5 555555544443 334444444444444432222233333334
Q ss_pred CCCCEEeecC
Q 046123 81 RSLRTLYLSG 90 (108)
Q Consensus 81 ~~L~~l~l~~ 90 (108)
++|+++++++
T Consensus 95 ~~L~~L~Ls~ 104 (168)
T 2ell_A 95 PNLTHLNLSG 104 (168)
T ss_dssp TTCCEEECBS
T ss_pred CCCCEEeccC
Confidence 4444444444
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.6e-12 Score=80.25 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=73.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc-cCcccccCCCCcEEeccCCcCCcccc--cccc
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLP--STIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~ 78 (108)
++|++|++++| .++.+ ..+..+.+| + +|++++|++.. +|..+..+++|+.|++++| .+..+| ..++
T Consensus 49 ~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINV-GLISV-SNLPKLPKL---K-----KLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESS-CCCCC-SSCCCCSSC---C-----EEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS
T ss_pred CCCCEEeCcCC-CCCCh-hhhccCCCC---C-----EEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh
Confidence 57899999995 57777 667788888 8 99999999986 6666777999999999995 577765 6788
Q ss_pred CCCCCCEEeecCCCCCccccc----CcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPE----TLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~----~~~~l~~L~ 108 (108)
.+++|+++++++|.. ..+|. .+..+++|+
T Consensus 118 ~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 118 KLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCC
T ss_pred cCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCc
Confidence 899999999999654 44554 566666653
No 26
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.3e-11 Score=78.32 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=36.7
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TINGLRS 82 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 82 (108)
+++++++ +.++.+|..+. ..+ + .|++++|+++.++ ..+..+++|+.|++++| .+..+|+ .|..+++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l---~-----~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTT---Q-----VLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTC---S-----EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CEEEeCC-CCcCccCccCC--CCC---c-----EEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCC
Confidence 4455555 34555554332 344 4 5555555555442 23555555555555552 3444443 2345555
Q ss_pred CCEEeecCC
Q 046123 83 LRTLYLSGC 91 (108)
Q Consensus 83 L~~l~l~~~ 91 (108)
|++|++++|
T Consensus 80 L~~L~L~~N 88 (170)
T 3g39_A 80 LTQLSLNDN 88 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555553
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=81.50 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=76.9
Q ss_pred CCcEEeccCCcCCCcCC--cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-cccc
Q 046123 3 SLKTLVLSGCLKLKKFP--DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STIN 78 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p--~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 78 (108)
.+++|++++ +.++.++ ..+..+.+| + .|++++|.+..+++ .|..+++|+.|++++|. +..++ ..|+
T Consensus 33 ~~~~L~L~~-N~l~~~~~~~~~~~l~~L---~-----~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 102 (220)
T 2v70_A 33 YTAELRLNN-NEFTVLEATGIFKKLPQL---R-----KINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFK 102 (220)
T ss_dssp TCSEEECCS-SCCCEECCCCCGGGCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGT
T ss_pred CCCEEEcCC-CcCCccCchhhhccCCCC---C-----EEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhc
Confidence 467889988 5677763 346778888 8 99999999997766 59999999999999954 55555 4688
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.+++|++|++++|......|..|..+++|+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 999999999999776666678888887764
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=1.9e-11 Score=79.36 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+++++|++++ +.++.++ ..+..+.+| + +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKSLPNGVFDELTSL---T-----QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFD 97 (208)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEcCC-CccCcCChhhhcccccC---c-----EEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhc
Confidence 4689999999 5677776 456788999 9 999999999988765 789999999999995 5666665 478
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.+++|+++++++|......+..|+.+++|+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 999999999999765444444577777664
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=3.4e-12 Score=78.91 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=38.7
Q ss_pred CCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++.|++++| .++ .+|..+..+.+| + .|++++|.+..+ ..+..+++|+.|++++|.....+|..++.+
T Consensus 18 ~l~~L~l~~n-~l~~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 18 DVKELVLDNS-RSNEGKLEGLTDEFEEL---E-----FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GCSEEECTTC-BCBTTBCCSCCTTCTTC---C-----EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred cCeEEEccCC-cCChhHHHHHHhhcCCC---c-----EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 4555666663 333 455555555555 5 555555555544 334555555555555533222244444444
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
++|+++++++|
T Consensus 88 ~~L~~L~ls~N 98 (149)
T 2je0_A 88 PNLTHLNLSGN 98 (149)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 55555555553
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.4e-12 Score=80.67 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=76.6
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc-cCcccccCCCCcEEeccCCcCCcccc--ccc
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLP--STI 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~ 77 (108)
+++|++|++++| .++.+ ..+..+.+| + ++++++|.+.. +|..+..+++|+.|++++| .+..+| ..+
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-ANLPKLNKL---K-----KLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPL 109 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TTCCCCTTC---C-----EEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGG
T ss_pred cCCCcEEECcCC-CCCCc-hhhhcCCCC---C-----EEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHH
Confidence 467999999995 67777 667888899 9 99999999996 6666778999999999995 466654 789
Q ss_pred cCCCCCCEEeecCCCCCccccc----CcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVPE----TLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p~----~~~~l~~L~ 108 (108)
+.+++|+++++++|.. ..+|. .++.+++|+
T Consensus 110 ~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 110 KKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp GGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCC
T ss_pred hhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcc
Confidence 9999999999999754 44443 466666553
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=8e-12 Score=80.71 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=24.9
Q ss_pred EEEecCccccc-cCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCC
Q 046123 38 SFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 92 (108)
+|++++|.+.. .+..+..+++|+.|++++|......|..++.+++|+++++++|.
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 45555544442 33444444555555555433222334444444445555554443
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=2.3e-12 Score=88.73 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=84.4
Q ss_pred CCCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecC-cccc-ccCcccccCCCCcEEeccCCcCCccccccc
Q 046123 2 KSLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEG-TAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTI 77 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~-~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~ 77 (108)
.+++.|++++|...+ .+|+.+..+.+| + +|++++ |.+. .+|..+..+++|++|++++|.....+|+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L---~-----~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYL---N-----FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTC---S-----EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCC---C-----eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 357899999954444 689999999999 9 999995 8887 778889999999999999966555899999
Q ss_pred cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+.+++|+++++++|.....+|..++.+++|+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 9999999999999877778898888888764
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=8.7e-12 Score=91.74 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=52.8
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-cccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 78 (108)
++|++|++++| .++.+ |..+..+.+| + +|++++|.+..+ |..|.++++|++|++++|. +..++ ..++
T Consensus 56 ~~L~~L~Ls~n-~l~~i~~~~~~~l~~L---~-----~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 125 (606)
T 3vq2_A 56 SELQWLDLSRC-EIETIEDKAWHGLHHL---S-----NLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG 125 (606)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCT
T ss_pred ccCcEEeCCCC-cccccCHHHhhchhhc---C-----EeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccC
Confidence 45556666653 34444 3445555555 5 666666666544 4446666666666666633 33333 4556
Q ss_pred CCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLK-NVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~ 108 (108)
++++|+++++++|.... .+|..++++++|+
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 66666666666654433 3566566555543
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=2.2e-11 Score=82.21 Aligned_cols=96 Identities=26% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
++|++|++++| .++.++ ..+..+.+| + +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus 85 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 154 (272)
T 3rfs_A 85 TNLTYLILTGN-QLQSLPNGVFDKLTNL---K-----ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFD 154 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTC---C-----EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCEEECCCC-ccCccChhHhcCCcCC---C-----EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhc
Confidence 45666666663 455554 334556666 6 777777777655544 566777777777774 3445444 356
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.+++|+++++++|......+..++.+++|
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 67777777777765443333445555554
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=2.1e-11 Score=78.67 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc--cccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS--IELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
+++++++ +.++++|..+.. .+ + .|++++|.+..+++. +..+++|+.|++++|......|.+|+++++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l---~-----~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HT---T-----ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TC---S-----EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCC-CCcCcCccCCCC--CC---C-----EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 6789999 678999976544 78 8 999999999988764 899999999999996544445788999999
Q ss_pred CCEEeecCCCCCcccccCcCCCCCCC
Q 046123 83 LRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
|++|++++|......|..|+++++|+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCC
Confidence 99999999776666666688887764
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=2.1e-11 Score=82.40 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=27.1
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCCCcccccCcCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSKLKNVPETLGKVE 105 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~ 105 (108)
+|++++|++..+++. +..+++|+.|++++| .+..+|+ .+..+++|+++++++|......|..++.++
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 444444444433322 344444444444442 2333332 244444444444444333333344444333
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.31 E-value=2.6e-11 Score=81.68 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=5.3
Q ss_pred cCCCCCCEEeecC
Q 046123 78 NGLRSLRTLYLSG 90 (108)
Q Consensus 78 ~~l~~L~~l~l~~ 90 (108)
+.+++|+++++++
T Consensus 154 ~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 154 DKLTSLKELRLYN 166 (270)
T ss_dssp TTCTTCCEEECCS
T ss_pred cCCcccceeEecC
Confidence 3334444444444
No 38
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4.6e-12 Score=80.53 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc--cccC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS--TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~ 79 (108)
+|++|++++ +.++.+ +.+..+.+| + +|++++|++..+|+. +..+++|+.|++++| .+..+|+ .++.
T Consensus 43 ~L~~L~Ls~-N~l~~~-~~l~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~ 111 (176)
T 1a9n_A 43 QFDAIDFSD-NEIRKL-DGFPLLRRL---K-----TLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLAS 111 (176)
T ss_dssp CCSEEECCS-SCCCEE-CCCCCCSSC---C-----EEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGG
T ss_pred CCCEEECCC-CCCCcc-cccccCCCC---C-----EEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhc
Confidence 455555555 234444 334445555 5 666666666655544 255666666666653 3455554 5555
Q ss_pred CCCCCEEeecCC
Q 046123 80 LRSLRTLYLSGC 91 (108)
Q Consensus 80 l~~L~~l~l~~~ 91 (108)
+++|+++++++|
T Consensus 112 l~~L~~L~l~~N 123 (176)
T 1a9n_A 112 LKSLTYLCILRN 123 (176)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEecCC
Confidence 666666666664
No 39
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=6.6e-12 Score=81.12 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|+.|++++ +.++.+| .+..+.+| + .|++++|.+..++ .+..+++|+.|++++|......|..++.++
T Consensus 44 ~~L~~L~l~~-n~i~~l~-~l~~l~~L---~-----~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLAN-INVTDLT-GIEYAHNI---K-----DLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEES-SCCSCCT-TGGGCTTC---S-----EEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccC-CCccChH-HHhcCCCC---C-----EEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 4789999999 5788888 57888899 9 9999999777554 688999999999999665555788899999
Q ss_pred CCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 82 SLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+|+++++++|......|..++.+++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 999999999877766777777777664
No 40
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.7e-11 Score=77.27 Aligned_cols=78 Identities=23% Similarity=0.448 Sum_probs=35.4
Q ss_pred CcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-ccCC
Q 046123 4 LKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-INGL 80 (108)
Q Consensus 4 L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l 80 (108)
|++|++++ +.++.+ |..+..+.+| + +|++++|+++.+|+. +..+++|+.|++++ +.+..+|+. +..+
T Consensus 35 L~~L~Ls~-N~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 35 KQRLWLNN-NQITKLEPGVFDHLVNL---Q-----QLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNL 104 (174)
T ss_dssp CSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred CcEEEeCC-CCccccCHHHhcCCcCC---C-----EEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccc
Confidence 44445544 233333 2334444444 4 555555555444433 34445555555544 233344432 4444
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
++|+++++++|
T Consensus 105 ~~L~~L~L~~N 115 (174)
T 2r9u_A 105 KSLTHIYLYNN 115 (174)
T ss_dssp TTCSEEECCSS
T ss_pred cCCCEEEeCCC
Confidence 45555555543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=1.3e-11 Score=90.78 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=46.2
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc--cCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG--LPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++|......|..+..+.+| + .|++++|.+.. +|..+..+++|+.|++++|......|..+++
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSL---N-----TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTC---C-----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCC---C-----EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence 345555555532222233444444555 4 55555555542 3444555555555555554333333444555
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+++|+++++++|......|..++++++|
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 5555555555544444444444444443
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.29 E-value=2.2e-11 Score=86.76 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++| .++.+ |..+..+.+| + .|++++|.+..++ ..+..+++|+.|++++|......|.++.+
T Consensus 299 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 299 TDLEQLTLAQN-EINKIDDNAFWGLTHL---L-----KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCEEECCCC-cccccChhHhcCcccC---C-----EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 34555555552 33333 3344555555 5 6666666655442 33555666666666664332233455666
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+++|+++++++|......+..++.+++|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cccccEEECCCCccccCCHhHhccCCcc
Confidence 6666666666644333222334555444
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=3.3e-11 Score=77.94 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=75.7
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc-ccccCCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP-STINGLRSL 83 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 83 (108)
++++.++ +.++.+|..+. ..+ + .|++++|.+..+|..+..+++|+.|++++| .+..++ .+|.++.+|
T Consensus 13 ~~l~~~~-~~l~~ip~~~~--~~l---~-----~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIP--RDV---T-----ELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTC---C-----EEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CEEEcCC-CCCCcCCCCCC--CCC---C-----EEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCC
Confidence 5688888 67889987553 578 8 999999999999988999999999999995 566655 578999999
Q ss_pred CEEeecCCCCCcccccCcCCCCCCC
Q 046123 84 RTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 84 ~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|++++|......|..|+++++|+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCC
Confidence 9999999766555556788887764
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=2.1e-11 Score=83.24 Aligned_cols=96 Identities=27% Similarity=0.335 Sum_probs=61.2
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc-ccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP-STINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l 80 (108)
++|++|++++ +.++.++.. ..+.+| + .|++++|++..+|..+..+++|+.|++++| .+..+| ..|.++
T Consensus 55 ~~L~~L~L~~-n~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l 123 (290)
T 1p9a_G 55 TRLTQLNLDR-AELTKLQVD-GTLPVL---G-----TLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGL 123 (290)
T ss_dssp TTCCEEECTT-SCCCEEECC-SCCTTC---C-----EEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTC
T ss_pred CCCCEEECCC-CccCcccCC-CCCCcC---C-----EEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCC
Confidence 3455555555 344444432 445556 6 777777777777777777888888888874 455555 457778
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|++|++++|......+..|..+++|+
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccChhhcccccCCC
Confidence 8888888888654433334466665553
No 45
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.2e-11 Score=91.63 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccc--ccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL--PSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l--p~~~~ 78 (108)
+++|+.|++++ +.++.+|..++.+.+| + .|++++|+++.+| .++.+++|+.|++++| .+..+ |+.++
T Consensus 462 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L---~-----~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 462 LLLVTHLDLSH-NRLRALPPALAALRCL---E-----VLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp GTTCCEEECCS-SCCCCCCGGGGGCTTC---C-----EEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred cccCcEeecCc-ccccccchhhhcCCCC---C-----EEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 46899999999 5788999999999999 9 9999999999988 8999999999999995 56666 88999
Q ss_pred CCCCCCEEeecCCCCCccccc
Q 046123 79 GLRSLRTLYLSGCSKLKNVPE 99 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~ 99 (108)
.+++|++|++++|.. ...|.
T Consensus 531 ~l~~L~~L~L~~N~l-~~~~~ 550 (567)
T 1dce_A 531 SCPRLVLLNLQGNSL-CQEEG 550 (567)
T ss_dssp GCTTCCEEECTTSGG-GGSSS
T ss_pred cCCCCCEEEecCCcC-CCCcc
Confidence 999999999999654 44443
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.29 E-value=4.5e-11 Score=80.46 Aligned_cols=96 Identities=26% Similarity=0.388 Sum_probs=67.9
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
++|++|++++ +.++.++ ..+..+.+| + +|++++|.+..+|.. +..+++|+.|++++| .+..+|+ .+.
T Consensus 109 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 178 (270)
T 2o6q_A 109 VNLAELRLDR-NQLKSLPPRVFDSLTKL---T-----YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD 178 (270)
T ss_dssp SSCCEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred cCCCEEECCC-CccCeeCHHHhCcCcCC---C-----EEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhc
Confidence 4566666666 3455554 345566677 7 888888888877665 788899999999885 4666654 578
Q ss_pred CCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~ 108 (108)
.+++|+++++++|.. ..+| ..|+.+++|+
T Consensus 179 ~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 179 KLTELKTLKLDNNQL-KRVPEGAFDSLEKLK 208 (270)
T ss_dssp TCTTCCEEECCSSCC-SCCCTTTTTTCTTCC
T ss_pred cCCCcCEEECCCCcC-CcCCHHHhccccCCC
Confidence 899999999999754 4455 4577666653
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.6e-11 Score=87.13 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=28.1
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVES 106 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~ 106 (108)
+|++++|.+..+|.. +.++++|+.|++++|......|..+..+++|++|++++|......|..|+++++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 444444444444332 344444444444443222222333444444444444443333333333443333
No 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=1.6e-11 Score=78.05 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccc-cCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTI-NGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l 80 (108)
.+|++|++++ +.++.+|......++| + +|++++|.+..+ +.+..+++|+.|++++| .+..+|+.+ +.+
T Consensus 19 ~~L~~L~l~~-n~l~~i~~~~~~~~~L---~-----~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 87 (176)
T 1a9n_A 19 VRDRELDLRG-YKIPVIENLGATLDQF---D-----AIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQAL 87 (176)
T ss_dssp TSCEEEECTT-SCCCSCCCGGGGTTCC---S-----EEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred CCceEEEeeC-CCCchhHHhhhcCCCC---C-----EEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcC
Confidence 5789999999 4777776533333488 8 999999999987 67999999999999995 577777655 889
Q ss_pred CCCCEEeecCCCCCccccc--CcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPE--TLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~--~~~~l~~L~ 108 (108)
++|+++++++|. +..+|. .+..+++|+
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLT 116 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCC
Confidence 999999999965 566776 677666653
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=5e-11 Score=80.59 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=5.3
Q ss_pred cCCCCCCEEeecC
Q 046123 78 NGLRSLRTLYLSG 90 (108)
Q Consensus 78 ~~l~~L~~l~l~~ 90 (108)
+.+++|+++++++
T Consensus 150 ~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 150 RDLGNLTHLFLHG 162 (285)
T ss_dssp TTCTTCCEEECCS
T ss_pred ccCCCccEEECCC
Confidence 3344444444444
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=3.3e-11 Score=82.11 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=28.5
Q ss_pred EEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCCCCcccccCcCC
Q 046123 38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCSKLKNVPETLGK 103 (108)
Q Consensus 38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~~~~~p~~~~~ 103 (108)
.|++++|.+..+ |..+..+++|+.|++++|. +..++ ..+..+++|+++++++|......|..+..
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 444444444433 2334444455555554432 22222 23444455555555554444444444433
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=4.3e-11 Score=84.09 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~ 77 (108)
+++|++|++++ +.++.++ ..+..+.+| + +|++++|.+..+++. +..+++|+.|++++| .+..+|+. +
T Consensus 68 l~~L~~L~L~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 137 (390)
T 3o6n_A 68 FRQVELLNLND-LQIEEIDTYAFAYAHTI---Q-----KLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF 137 (390)
T ss_dssp CCCCSEEECTT-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cccCcEEECCC-CcccccChhhccCCCCc---C-----EEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh
Confidence 35677888877 3566654 466777777 7 888888887766544 777888888888874 56666665 4
Q ss_pred cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+.+++|+++++++|......|..++.+++|+
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 6777888888887655554455666666653
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=2.7e-11 Score=88.24 Aligned_cols=97 Identities=27% Similarity=0.378 Sum_probs=58.6
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
++|++|++++| .++.++ ..+..+.+| + +|++++|.+..++ ..|.++++|+.|++++| .+..+++ .++
T Consensus 52 ~~L~~L~Ls~n-~i~~i~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 121 (570)
T 2z63_A 52 PELQVLDLSRC-EIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG 121 (570)
T ss_dssp SSCCEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCT
T ss_pred CCceEEECCCC-cCCccCcccccCchhC---C-----EEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccc
Confidence 45666666663 455543 445666666 6 7777777666554 34666667777777663 3555443 466
Q ss_pred CCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLK-NVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~ 108 (108)
++++|+++++++|.... .+|..|+++++|+
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCC
Confidence 67777777777754433 3566666666553
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.26 E-value=3.8e-11 Score=85.52 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=80.0
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++|+++++++|......|..+..+.+| + .|++++|.+..+ |..+..+++|+.|++++|......|..++.+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDL---E-----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred cCceEEEecCccccccchhhcccCCCC---C-----EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 468899999954344456778889999 9 999999999966 4569999999999999965444446788999
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|++|++++|......|..|+.+++|+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccCCEEECCCCcccccChhhcccccccc
Confidence 9999999999877666688888887764
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=4e-11 Score=80.72 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=42.8
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
+|++|++++| .++.++ ..+..+.+| + +|++++|.+..++ ..+..+++|+.|++++|. +..+++ .++.
T Consensus 53 ~L~~L~l~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 122 (276)
T 2z62_A 53 ELQVLDLSRC-EIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH 122 (276)
T ss_dssp TCSEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred CCcEEECCCC-cCCccCHHHccCCcCC---C-----EEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhccc
Confidence 4445555442 333333 234444444 4 5555555554333 234455555555555432 222222 4555
Q ss_pred CCCCCEEeecCCCCCc-ccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLK-NVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L 107 (108)
+++|+++++++|.... .+|..++.+++|
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCCCCEEECcCCccceecCchhhccCCCC
Confidence 5555555555543322 234445444443
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=2.7e-11 Score=90.25 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccC
Q 046123 3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 79 (108)
+|++|++++| .++.+ |..+..+.+| + +|++++|.+..+|+. |..+++|+.|++++|. +..+| .+|++
T Consensus 50 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 119 (680)
T 1ziw_A 50 QLTSLDVGFN-TISKLEPELCQKLPML---K-----VLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK 119 (680)
T ss_dssp TCSEEECCSS-CCCCCCTTHHHHCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred cCcEEECCCC-ccCccCHHHHhcccCc---C-----EEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence 4455555552 23333 3344445555 5 666666666655543 5666666666666643 33333 45666
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+++|+++++++|......|..++++++|
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred cCCCCEEECCCCcccccCchhhcccccC
Confidence 6666666666655544445555555544
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=4.3e-11 Score=88.58 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=70.8
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~ 77 (108)
+++|++|++++| .++.++ ..+..+.+| + +|++++|.+..+++. ++.+++|+.|++++| .+..+|+. |
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 143 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYAFAYAHTI---Q-----KLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF 143 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCcEEECCCC-CCCCCChHHhcCCCCC---C-----EEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHh
Confidence 356788888884 566654 467777788 7 888888888866554 678888888888884 46666664 4
Q ss_pred cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+.+++|++|++++|......|..|+.+++|+
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 7788888888888766555566677776654
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=5.1e-11 Score=80.19 Aligned_cols=97 Identities=20% Similarity=0.092 Sum_probs=77.0
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++++|++++ +.++.++ ..+..+.+| + +|++++|.+..+++ .+..+++|+.|++++|......+..+.++
T Consensus 29 ~l~~L~ls~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSF-NPLRHLGSYSFFSFPEL---Q-----VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TCCEEECTT-CCCCEECTTTTTTCTTC---S-----EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccEEECCC-CcccccCHhHhccccCC---c-----EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 589999999 5677776 477888999 9 99999999997765 58999999999999955333444678999
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++|+++++++|......+..++.+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCC
Confidence 9999999999765554444677777664
No 58
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.6e-11 Score=76.16 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=74.1
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCcccccc-ccCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPST-INGLRS 82 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 82 (108)
+.+++++ +.++.+|..+. .++ + .|++++|++..++ ..+..+++|+.|++++ +.+..+|+. |..+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDK---Q-----RLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred cEEEeCC-CCCCccCCCcC--CCC---c-----EEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcch
Confidence 5788888 67899997654 678 8 9999999999774 5599999999999999 467788775 588999
Q ss_pred CCEEeecCCCCCccccc-CcCCCCCCC
Q 046123 83 LRTLYLSGCSKLKNVPE-TLGKVESLE 108 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p~-~~~~l~~L~ 108 (108)
|++|++++|. +..+|. .|+.+++|+
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLT 108 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred hhEEECCCCc-cceeCHHHhccccCCC
Confidence 9999999965 455665 488887764
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=86.24 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc--cc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS--TI 77 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~--~~ 77 (108)
++|++|++++| .++.+ |..+..+.+| + +|++++|.+..+++. +..+++|+.|++++| .+..+|. .+
T Consensus 76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSN-GINTIEEDSFSSLGSL---E-----HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLF 145 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred CCCCEEECCCC-ccCccCHhhcCCCCCC---C-----EEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhh
Confidence 45667777763 45554 3455666666 6 666666666666554 566666666666663 4445554 45
Q ss_pred cCCCCCCEEeecCCCCCccc-ccCcCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNV-PETLGKVES 106 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~-p~~~~~l~~ 106 (108)
+.+++|+++++++|+....+ +..++++++
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 56666666666665434433 234444443
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=4.2e-11 Score=87.29 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc--ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR--GLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++|......|..+..+.+| + .|++++|.+. .+|..+..+++|+.|++++|......|..+..
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSL---E-----VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTC---C-----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcC---c-----EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 456666666643222234555666666 6 7777777765 46666777777777777775444344667777
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+++|+++++++|......|..++.+++|+
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 77777777777655444445566666553
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=1.5e-11 Score=83.80 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=37.0
Q ss_pred EEEecCcccccc-CcccccCCCCcEEeccCCcCCc-cccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLK-SLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+|++++|.+... +..+..+++|+.|++++|.... .+|..++.+++|+++++++|......|..++.+++|
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 555555555532 2335555566666665543222 255556666666666666654444445555555544
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=1e-11 Score=92.65 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCCcEEeccCCcCCCc------------------CCcccC--CccccccccCcceeEEEecCcccc-ccCcccccCCCC
Q 046123 1 MKSLKTLVLSGCLKLKK------------------FPDIVG--KSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGS 59 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~------------------~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L 59 (108)
+++|++|++++| .+.. +|+.++ .+.+| + +|++++|.+. .+|+.++.+++|
T Consensus 205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L---~-----~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL---T-----DVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC---C-----EEEEECCTTCSSCCTTTTTCSSC
T ss_pred ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCC---C-----EEEecCCcCCccChHHHhcCCCC
Confidence 467888899885 4666 888887 88888 8 8888888866 678778888888
Q ss_pred cEEeccCCc-CCc-cccccccCC------CCCCEEeecCCCCCccccc--CcCCCCCCC
Q 046123 60 VLLNLKDCK-NLK-SLPSTINGL------RSLRTLYLSGCSKLKNVPE--TLGKVESLE 108 (108)
Q Consensus 60 ~~L~l~~~~-~~~-~lp~~~~~l------~~L~~l~l~~~~~~~~~p~--~~~~l~~L~ 108 (108)
+.|++++|. ... .+|+.++.+ ++|+++++++|... .+|. .++++++|+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 888888865 333 578777665 78888888886554 7777 677776654
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=4.9e-11 Score=89.02 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=56.9
Q ss_pred CCcEEeccCCcCCCcCCcccC--CccccccccCcceeEEEecCccccccCcccccCCCCcEEecc------CCcCCcccc
Q 046123 3 SLKTLVLSGCLKLKKFPDIVG--KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLK------DCKNLKSLP 74 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~------~~~~~~~lp 74 (108)
+|++|++++ +.++.+|..+. .+.+| + .|++++|++..+|..+..+++|+.|+++ +|...+.+|
T Consensus 489 ~L~~L~Ls~-N~l~~lp~~~~~~~l~~L---~-----~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 489 LLTSIDLRF-NKLTKLSDDFRATTLPYL---V-----GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp GCCEEECCS-SCCCBCCGGGSTTTCTTC---C-----EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred CccEEECcC-CcCCccChhhhhccCCCc---C-----EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 566677766 35556666554 66666 6 7777777776666666677777777773 333345566
Q ss_pred ccccCCCCCCEEeecCCCCCcccccCc
Q 046123 75 STINGLRSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 75 ~~~~~l~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.+++.+++|++|++++|.. +.+|..+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 6677777777777777544 6666543
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.24 E-value=3.9e-11 Score=87.30 Aligned_cols=95 Identities=25% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
++++|++++| .++.+ |..+..+.+| + +|++++|++..++ ..+..+++|+.|++++|. +..+|+ .+++
T Consensus 27 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 96 (549)
T 2z81_A 27 AMKSLDLSFN-KITYIGHGDLRACANL---Q-----VLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGP 96 (549)
T ss_dssp TCCEEECCSS-CCCEECSSTTSSCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred CccEEECcCC-ccCccChhhhhcCCcc---c-----EEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhcc
Confidence 5667777773 45554 3556666666 6 6666666666544 346666666666666643 444333 3666
Q ss_pred CCCCCEEeecCCCCCc-ccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLK-NVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L 107 (108)
+++|++|++++|.... ..|..++++++|
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCc
Confidence 6666666666654333 234455555544
No 65
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=7.4e-11 Score=74.84 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=71.2
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+++++|++++ +.++.+ |..+..+.+| + +|++++|+++.+|+. |..+++|+.|++++| .+..+|+ .|.
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~ 99 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGVFDRLTQL---T-----RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD 99 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEEcCC-CcCCccChhhhcCcccC---C-----EEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc
Confidence 4689999999 578777 5678889999 9 999999999988876 789999999999994 6777776 588
Q ss_pred CCCCCCEEeecCCCCC
Q 046123 79 GLRSLRTLYLSGCSKL 94 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~ 94 (108)
.+++|+++++++|...
T Consensus 100 ~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 100 NLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCCEEECCSSCBC
T ss_pred CCCCCCEEEeCCCCCC
Confidence 9999999999997653
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=5.6e-11 Score=83.18 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+|++|++++ +.++.++ ..+..+.+| + .|++++|++..+++. |..+++|+.|++++|......|..|.++
T Consensus 65 ~L~~L~L~~-N~i~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 65 NLHSLLLSH-NHLNFISSEAFVPVPNL---R-----YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp TCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccCEEECCC-CcCCccChhhccCCCCC---C-----EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence 444455544 2344433 334444444 4 555555555544332 4455555555555532222223345555
Q ss_pred CCCCEEeecC
Q 046123 81 RSLRTLYLSG 90 (108)
Q Consensus 81 ~~L~~l~l~~ 90 (108)
++|++|++++
T Consensus 136 ~~L~~L~L~~ 145 (361)
T 2xot_A 136 AQLQKLYLSQ 145 (361)
T ss_dssp TTCCEEECCS
T ss_pred ccCCEEECCC
Confidence 5555555555
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.23 E-value=2.9e-11 Score=79.94 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=33.6
Q ss_pred CcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCcc-ccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123 4 LKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTA-IRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING 79 (108)
Q Consensus 4 L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 79 (108)
+++|++++ +.++.+|+ .+..+.+| + .+++++|. +..+++ .|.++++|+.|++++|+.+..+| ..|.+
T Consensus 33 l~~L~l~~-n~l~~i~~~~~~~l~~L---~-----~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 33 TQTLKLIE-THLRTIPSHAFSNLPNI---S-----RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp CCEEEEES-CCCSEECTTTTTTCTTC---C-----EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred ccEEEEeC-CcceEECHHHccCCCCC---c-----EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 44455554 23444432 34444444 4 44444443 444433 24444444444444422333333 23344
Q ss_pred CCCCCEEeecC
Q 046123 80 LRSLRTLYLSG 90 (108)
Q Consensus 80 l~~L~~l~l~~ 90 (108)
+++|+++++++
T Consensus 104 l~~L~~L~l~~ 114 (239)
T 2xwt_C 104 LPLLKFLGIFN 114 (239)
T ss_dssp CTTCCEEEEEE
T ss_pred CCCCCEEeCCC
Confidence 44444444444
No 68
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=6.1e-11 Score=83.00 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCcEEeccCCcCCCcCC-cccC-CccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccc-ccc
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVG-KSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
.++.|++++ +.++.++ ..+. .+.+| + .|++++|++..+++ .|..+++|+.|++++| .+..+++ .|.
T Consensus 40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L---~-----~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 109 (361)
T 2xot_A 40 YTALLDLSH-NNLSRLRAEWTPTRLTNL---H-----SLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS 109 (361)
T ss_dssp TCSEEECCS-SCCCEECTTSSSSCCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred CCCEEECCC-CCCCccChhhhhhccccc---C-----EEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC
Confidence 578899999 5777776 4454 78889 8 99999999998775 4999999999999995 4666654 688
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++.+|++|++++|......|..|.++++|+
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 999999999999776655577788777664
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=4.5e-11 Score=91.61 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccccc--c
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPST--I 77 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~--~ 77 (108)
++|++|++++|.....+ |..+..+.+| + +|++++|.+..+ |..|.++++|+.|++++|......|+. +
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L---~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNL---R-----ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTC---C-----EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCC---C-----EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 34455555554333343 3444555555 5 555555555533 444555555555555554333333332 5
Q ss_pred cCCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESL 107 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L 107 (108)
+++++|++|++++|......+ ..|+++++|
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 555556666666544433322 344555444
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=3.3e-11 Score=83.78 Aligned_cols=94 Identities=23% Similarity=0.297 Sum_probs=59.5
Q ss_pred CCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCcccccc-ccC
Q 046123 3 SLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPST-ING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~ 79 (108)
++++|++++ +.++.++. .+..+.+| + .|++++|.+..++ ..+..+++|+.|++++| .+..+|+. +++
T Consensus 53 ~L~~L~l~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSN-NRITYISNSDLQRCVNL---Q-----ALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP 122 (353)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred cCcEEECCC-CcCcccCHHHhccCCCC---C-----EEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC
Confidence 567777777 45666653 56666777 7 7777777777554 34777777777777773 45555554 666
Q ss_pred CCCCCEEeecCCCCCccccc--CcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPE--TLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~--~~~~l~~L 107 (108)
+++|+++++++|. +..+|. .++++++|
T Consensus 123 l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 123 LSSLTFLNLLGNP-YKTLGETSLFSHLTKL 151 (353)
T ss_dssp CTTCSEEECTTCC-CSSSCSSCSCTTCTTC
T ss_pred CccCCEEECCCCC-CcccCchhhhccCCCC
Confidence 7777777777743 344554 45555554
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.22 E-value=3.1e-11 Score=87.82 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCc-cccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLK-SLPSTI 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~-~lp~~~ 77 (108)
+++|++|++++| .++.++ ..+..+.+| + +|++++|++..+++. ++.+++|+.|++++|.... ..|+.+
T Consensus 49 l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSS-RINTIEGDAFYSLGSL---E-----HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCC-CcCccChhhccccccC---C-----EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 356788888884 555554 567777777 7 888888887766655 7778888888888754222 345667
Q ss_pred cCCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESL 107 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L 107 (108)
+++++|+++++++|.....+| ..++++++|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred hccCCccEEECCCCccccccCHhhhhccccc
Confidence 777777777777766555555 345555543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=2.5e-11 Score=83.37 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCcEEeccCCcCCCcCCccc--CCccccccccCcceeEEEecCccccccCcccccC-----CCCcEEeccCCcCCcccc
Q 046123 2 KSLKTLVLSGCLKLKKFPDIV--GKSSQRKLQAGISSWSFILEGTAIRGLPASIELL-----SGSVLLNLKDCKNLKSLP 74 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~--~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~~~lp 74 (108)
++|++|++++|......|..+ ..+.+| + +|++++|++..+|..+..+ ++|+.|++++|. +..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDL---N-----ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCC---S-----EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCc---c-----EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 567888888853333566654 667777 7 8888888887666666665 778888888754 44443
Q ss_pred -ccccCCCCCCEEeecCCCCCcc
Q 046123 75 -STINGLRSLRTLYLSGCSKLKN 96 (108)
Q Consensus 75 -~~~~~l~~L~~l~l~~~~~~~~ 96 (108)
+.++.+++|+++++++|...+.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHHhccCCCCCEEECCCCCcCcc
Confidence 6777778888888887655443
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=8e-11 Score=84.13 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=35.8
Q ss_pred EEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.|++++|.+..+ |..+..+++|+.|++++|......+..|.++++|++|++++|......+..|..+++|
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 555555555544 3335555666666666533222233455666666666666654333333344555444
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=3.6e-11 Score=87.12 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=67.0
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
+++++|++++| .++.++ ..+..+.+| + +|++++|++..+ |..+..+++|++|++++| .+..+|.. .
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKL---R-----ILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTC---C-----EEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--C
T ss_pred ccccEEECCCC-cccccChhhccccccc---c-----EEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--c
Confidence 35777888874 566655 566777777 7 888888887755 556778888888888874 56677765 6
Q ss_pred CCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLK-NVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~ 108 (108)
+++|++|++++|.... .+|..|+++++|+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cCCccEEeccCCccccccchhhhccCCcce
Confidence 7778888888765544 4566777776654
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=83.23 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
+++|+.|++++|+.+..++ ..+..+.+| + .|++++|.+..+|. +..+++|+.|++++|......|..|.+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L---~-----~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNL---R-----YLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSC---C-----EEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred CcccCEeCCCCCCCcceeCcchhhccccc---C-----eecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence 4678889998877787776 466778888 8 99999998888774 788889999999986444444678888
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
+++|++|++++|......+..|.++++|+
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 89999999998766666666777777664
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=9.6e-11 Score=83.97 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=36.9
Q ss_pred EEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.|++++|.+..+ |..+..+++|+.|++++|......|..|.++++|++|++++|......+..|..+++|
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 555555555544 3335566666666666643333334456666666666666654333223345555544
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.20 E-value=1.2e-10 Score=85.73 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=56.2
Q ss_pred CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++++|++++ +.++.+ |..+..+.+| + +|++++|++..+ |..|.++++|+.|++++|......|.+++++
T Consensus 34 ~l~~L~Ls~-n~i~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 34 STECLEFSF-NVLPTIQNTTFSRLINL---T-----FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TCCEEECTT-CCCSEECTTTSTTCTTC---S-----EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred cCcEEEccC-CccCcCChhHhccCccc---e-----EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 456677776 345554 4556666666 6 677777666644 4446666677777776644333445566666
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
++|+++++++|......|..++++++|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccccEeeccccCcccCCcchhccCCcc
Confidence 666666666654433334445555444
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.19 E-value=9.9e-11 Score=85.83 Aligned_cols=95 Identities=21% Similarity=0.157 Sum_probs=65.9
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
+++++|++++ +.++.++ ..+..+.+| + +|++++|++..+ |..|.++++|+.|++++| .+..+|.. .
T Consensus 52 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQ-NSISELRMPDISFLSEL---R-----VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--P 119 (562)
T ss_dssp TTCCEEECCS-SCCCCCCGGGTTTCTTC---C-----EEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--C
T ss_pred CCcCEEECCC-CCccccChhhhccCCCc---c-----EEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--c
Confidence 3577788887 4566665 567777777 7 888888888766 445777888888888874 46677765 6
Q ss_pred CCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLK-NVPETLGKVESLE 108 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~ 108 (108)
+++|++|++++|.... ..|..|+++++|+
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred cccCCEEECCCCCccccCchHhhcccCccc
Confidence 7778888888765433 2346677666654
No 79
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.18 E-value=1.8e-10 Score=82.80 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+.+++|++++ +.++.+ +..+..+.+| + +|++++|.+..+ |..|.++++|+.|++++| .+..+|. .|+
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHL---E-----ELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST
T ss_pred CCCcEEECCC-CccceECHhHccCCCCC---C-----EEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc
Confidence 3688999999 567776 4678889999 9 999999999966 666999999999999994 5777775 578
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++++|++|++++|......|..|+++++|+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCC
Confidence 899999999999877666677788887764
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.17 E-value=2.2e-10 Score=82.12 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=38.6
Q ss_pred CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123 3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
++++|++++| .++.+ +..+..+.+| + .|++++|.+..++ ..|.++++|+.|++++| .+..+|+ .++.
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 145 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFRHLHHL---E-----VLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY 145 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred CccEEECcCC-cCceECHHHcCCCCCC---C-----EEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcc
Confidence 3555555552 34443 3445555555 5 5555555555443 23555555555555553 2333333 2444
Q ss_pred CCCCCEEeecCC
Q 046123 80 LRSLRTLYLSGC 91 (108)
Q Consensus 80 l~~L~~l~l~~~ 91 (108)
+++|++|++++|
T Consensus 146 l~~L~~L~L~~N 157 (452)
T 3zyi_A 146 LSKLRELWLRNN 157 (452)
T ss_dssp CTTCCEEECCSC
T ss_pred cCCCCEEECCCC
Confidence 555555555553
No 81
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=2.2e-10 Score=79.33 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=51.2
Q ss_pred EEeccCCcCCCcCCcccCCccccccccCcceeEEEecC-ccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccCCCC
Q 046123 6 TLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEG-TAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STINGLRS 82 (108)
Q Consensus 6 ~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~-~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~ 82 (108)
.++.++++.++.+|. +..+.+| + .|++++ |.+..+++ .|.++++|+.|+|++| .+..+| ..|+++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L---~-----~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENL---T-----ELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCC---S-----EEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCCccCC-CCCCCCe---e-----EEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcC
Confidence 345555325666776 6666667 6 777775 77776654 3677777777777774 344443 45677777
Q ss_pred CCEEeecCCCCCcccc
Q 046123 83 LRTLYLSGCSKLKNVP 98 (108)
Q Consensus 83 L~~l~l~~~~~~~~~p 98 (108)
|++|++++|.. ..+|
T Consensus 82 L~~L~l~~N~l-~~~~ 96 (347)
T 2ifg_A 82 LSRLNLSFNAL-ESLS 96 (347)
T ss_dssp CCEEECCSSCC-SCCC
T ss_pred CCEEeCCCCcc-ceeC
Confidence 77777777543 3444
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.6e-10 Score=89.44 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=57.0
Q ss_pred CCcEEeccCCcCCCcCCcccC--CccccccccCcceeEEEecCccccccCcccccCCCCcEEeccC------CcCCcccc
Q 046123 3 SLKTLVLSGCLKLKKFPDIVG--KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKD------CKNLKSLP 74 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~------~~~~~~lp 74 (108)
+|+.|++++| .+..+|..+. .+++| + .|++++|++..+|..+..+++|+.|++++ |.....+|
T Consensus 729 ~L~~L~Ls~N-~L~~lp~~l~~~~l~~L---~-----~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 729 LLTTIDLRFN-KLTSLSDDFRATTLPYL---S-----NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp GCCEEECCSS-CCCCCCGGGSTTTCTTC---C-----EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred CccEEECCCC-CCccchHHhhhccCCCc---C-----EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 5666666663 5556666555 56666 6 77777777666666666777777777754 33345566
Q ss_pred ccccCCCCCCEEeecCCCCCcccccCc
Q 046123 75 STINGLRSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 75 ~~~~~l~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.+++.+++|++|++++|.. +.+|..+
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 6676777777777777544 6666543
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=1.4e-11 Score=84.74 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCCcEEeccCCcCCCcC-Cccc-CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIV-GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~-~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|++|++++| .++.+ +..+ ..+.+| + .|++++|.+..++. ...+++|+.|++++ +.+..+|+.+..
T Consensus 144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L---~-----~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~ 212 (317)
T 3o53_A 144 SRVQYLDLKLN-EIDTVNFAELAASSDTL---E-----HLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQS 212 (317)
T ss_dssp SSEEEEECTTS-CCCEEEGGGGGGGTTTC---C-----EEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGG
T ss_pred CCCCEEECCCC-CCCcccHHHHhhccCcC---C-----EEECCCCcCccccc-ccccccCCEEECCC-CcCCcchhhhcc
Confidence 45667777773 45444 2333 245566 6 66666666665533 23356666666666 345555555666
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+++|+++++++| .+..+|..+..+++|
T Consensus 213 l~~L~~L~L~~N-~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNL 239 (317)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTC
T ss_pred cCcccEEECcCC-cccchhhHhhcCCCC
Confidence 666666666664 334555555555444
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=88.23 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccc-ccc-CcccccCCCCcEEeccCCcCCcccccccc
Q 046123 2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAI-RGL-PASIELLSGSVLLNLKDCKNLKSLPSTIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~-~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 78 (108)
+++++|++++| .++.+ |..+..+.+| + +|++++|.. ..+ |..|.++++|+.|++++|......|++|+
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L---~-----~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQL---Q-----LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSC---S-----EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCcCEEECCCC-cCCccChhHCcccccC---e-----EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 57899999994 66665 6788899999 9 999999954 466 56699999999999999665555688999
Q ss_pred CCCCCCEEeecCCCCCcccccC--cCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPET--LGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~--~~~l~~L~ 108 (108)
++++|++|++++|......|.. ++++++|+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 9999999999998777666654 78887775
No 85
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.5e-10 Score=72.37 Aligned_cols=87 Identities=24% Similarity=0.367 Sum_probs=72.1
Q ss_pred CCCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123 1 MKSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~ 77 (108)
+++|++|++++ +.++.+|. .+..+.+| + .|++++|.++.+|+. +..+++|+.|++++| .+..+|+. +
T Consensus 51 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 120 (177)
T 2o6r_A 51 LTQLTKLSLSQ-NQIQSLPDGVFDKLTKL---T-----ILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIF 120 (177)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cccccEEECCC-CcceEeChhHccCCCcc---C-----EEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHh
Confidence 46799999999 57888774 46788999 9 999999999988766 789999999999995 56777765 5
Q ss_pred cCCCCCCEEeecCCCCCccc
Q 046123 78 NGLRSLRTLYLSGCSKLKNV 97 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~ 97 (108)
..+++|+++++++|......
T Consensus 121 ~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCTTCCEEECCSSCBCCCH
T ss_pred cCCcccCEEEecCCCeeccC
Confidence 78999999999998765443
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.15 E-value=3.2e-10 Score=83.40 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=46.1
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-cccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 79 (108)
++|++|++++ +.++.+|..+..+.+| + +|++++|.+..+ |..+..+++|+.|++++|.....+|. .++.
T Consensus 278 ~~L~~L~l~~-n~l~~lp~~l~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 278 SGLQELDLTA-THLSELPSGLVGLSTL---K-----KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTCSEEECTT-SCCSCCCSSCCSCTTC---C-----EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCCCEEeccC-CccCCCChhhcccccC---C-----EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 4566666666 3566666666666666 6 666666666644 33455556666666665443334433 2445
Q ss_pred CCCCCEEeecCCC
Q 046123 80 LRSLRTLYLSGCS 92 (108)
Q Consensus 80 l~~L~~l~l~~~~ 92 (108)
+++|+++++++|.
T Consensus 349 l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 349 LENLRELDLSHDD 361 (606)
T ss_dssp CTTCCEEECCSSC
T ss_pred cCcCCEEECCCCc
Confidence 5555555555543
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=1.3e-10 Score=76.77 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=78.7
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecC-ccccccCc-ccccCCCCcEEeccCCcCCccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEG-TAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTI 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~-~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~ 77 (108)
+++|++|++++|..++.++ ..+..+.+| + .+++++ |.++.+++ .|..+++|+.|++++| .+..+|+ +
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L---~-----~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~ 123 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKV---T-----HIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-L 123 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTC---C-----EEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-C
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCC---c-----EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-c
Confidence 4679999999954488886 467888999 9 999998 99998875 4889999999999994 5777887 8
Q ss_pred cCCCCCC---EEeecCCCCCccccc-CcCCCCCCC
Q 046123 78 NGLRSLR---TLYLSGCSKLKNVPE-TLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~---~l~l~~~~~~~~~p~-~~~~l~~L~ 108 (108)
+.+.+|+ ++++++|..+..+|. .|+++++|+
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 8888888 999999745666664 577777653
No 88
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=2.3e-10 Score=88.56 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCCcEEeccCCcCCCcCCcccCCc--------cccccccCcceeEEEecCccccccCcccc--cCCCCcEEeccCCcCCc
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKS--------SQRKLQAGISSWSFILEGTAIRGLPASIE--LLSGSVLLNLKDCKNLK 71 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~--------~~L~~~~~~~~~~l~l~~~~~~~~p~~~~--~l~~L~~L~l~~~~~~~ 71 (108)
++|+.|++++ +.+..+|..+... ++| + .|++++|++..+|..+. .+++|+.|++++| .+.
T Consensus 697 ~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L---~-----~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~ 766 (876)
T 4ecn_A 697 SPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLL---T-----TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFS 766 (876)
T ss_dssp CCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGC---C-----EEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCS
T ss_pred CCCCEEECCC-CcCCccChHHhccccccccccCCc---c-----EEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCC
Confidence 5677788877 4566776544332 266 6 88888888888888776 8888999999885 455
Q ss_pred cccccccCCCCCCEEeecC------CCCCcccccCcCCCCCCC
Q 046123 72 SLPSTINGLRSLRTLYLSG------CSKLKNVPETLGKVESLE 108 (108)
Q Consensus 72 ~lp~~~~~l~~L~~l~l~~------~~~~~~~p~~~~~l~~L~ 108 (108)
.+|..++.+++|+.|++++ |.....+|..++++++|+
T Consensus 767 ~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 6888888888899998876 556677888887777764
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.14 E-value=4.1e-10 Score=77.50 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+|++|++++| .++.+ |..+..+.+| + .|++++|.+..+++ .+..+++|+.|++++| .+..+|.++..+
T Consensus 193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l 262 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAASLKGLNNL---A-----KLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH 262 (330)
T ss_dssp TCSEEECTTS-CCCEECTGGGTTCTTC---C-----EEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC
T ss_pred cCCEEECCCC-cCCccCHHHhcCCCCC---C-----EEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccC
Confidence 3444444442 33333 3444445555 5 66666666554433 3555666666666663 345566656666
Q ss_pred CCCCEEeecCCC
Q 046123 81 RSLRTLYLSGCS 92 (108)
Q Consensus 81 ~~L~~l~l~~~~ 92 (108)
++|+++++++|.
T Consensus 263 ~~L~~L~l~~N~ 274 (330)
T 1xku_A 263 KYIQVVYLHNNN 274 (330)
T ss_dssp SSCCEEECCSSC
T ss_pred CCcCEEECCCCc
Confidence 666666666643
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=2.6e-10 Score=85.01 Aligned_cols=97 Identities=25% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
+++++|++++ +.++.++ ..+..+.+| + +|++++|.+..+ |..+..+++|+.|++++| .+..+|+ +|+
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQL---T-----SLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTC---S-----EEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEECCC-CCCCCcCHHHHhCCCcC---c-----EEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 3689999999 5677776 468888999 9 999999999966 455899999999999995 5777776 689
Q ss_pred CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
++++|+++++++|......|..|+++++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCC
Confidence 999999999999766554557788888774
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=4e-10 Score=79.17 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 78 (108)
+++|++|++++| .++.++ ..+..+.+| + +|++++|.+..+|+. +..+++|+.|++++|......|..++
T Consensus 92 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 92 AHTIQKLYMGFN-AIRYLPPHVFQNVPLL---T-----VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred CCCcCEEECCCC-CCCcCCHHHhcCCCCC---C-----EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 467999999994 677765 667889999 9 999999999988877 68999999999999654333455789
Q ss_pred CCCCCCEEeecCCCCCc
Q 046123 79 GLRSLRTLYLSGCSKLK 95 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~ 95 (108)
.+++|+++++++|....
T Consensus 163 ~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp SCTTCCEEECCSSCCSB
T ss_pred CCCCCCEEECCCCcCCc
Confidence 99999999999975443
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=3.6e-10 Score=83.69 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=71.2
Q ss_pred CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~ 78 (108)
+++|++|++++| .++.+| ..++.+.+| + +|++++|.+..+|+. +..+++|+.|++++|......|..++
T Consensus 98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLL---T-----VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCCCEEECCCC-cCCCCCHHHHcCCCCC---C-----EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 467999999995 577775 566889999 9 999999999988877 68999999999999654444556799
Q ss_pred CCCCCCEEeecCCCCCc
Q 046123 79 GLRSLRTLYLSGCSKLK 95 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~ 95 (108)
.+++|++|++++|....
T Consensus 169 ~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 169 ATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TCTTCCEEECTTSCCSB
T ss_pred cCCcCcEEECcCCCCCC
Confidence 99999999999975543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=6.7e-10 Score=74.82 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=26.0
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 92 (108)
.|++++|+++.++ .+..+++|+.|++++| .+..++ .++.+++|+++++++|.
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc
Confidence 4444444444332 3455555555555552 344443 35555556666665543
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.11 E-value=4.9e-10 Score=77.24 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
++++|++++ +.++.++ ..+..+.+| + +|++++|.+..+ |..+..+++|+.|++++| .+..+|..+.
T Consensus 55 ~l~~L~l~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-- 122 (332)
T 2ft3_A 55 DTTLLDLQN-NDISELRKDDFKGLQHL---Y-----ALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-- 122 (332)
T ss_dssp TCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--
T ss_pred CCeEEECCC-CcCCccCHhHhhCCCCC---c-----EEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--
Confidence 456666666 3455543 455566666 6 666666666644 444666666666666663 3445554433
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
++|+++++++|
T Consensus 123 ~~L~~L~l~~n 133 (332)
T 2ft3_A 123 SSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 44555555553
No 95
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.11 E-value=5.1e-10 Score=77.01 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS 75 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~ 75 (108)
.+++|++++ +.++.++ ..+..+.+| + +|++++|.+..+ |..+..+++|+.|++++| .+..+|.
T Consensus 53 ~l~~L~L~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~ 117 (330)
T 1xku_A 53 DTALLDLQN-NKITEIKDGDFKNLKNL---H-----TLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE 117 (330)
T ss_dssp TCCEEECCS-SCCCCBCTTTTTTCTTC---C-----EEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred CCeEEECCC-CcCCEeChhhhccCCCC---C-----EEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 456666666 3455554 355666666 6 666666666654 445666666666666663 3444444
No 96
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=2.3e-10 Score=82.86 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=70.0
Q ss_pred CCCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc-ccccccc
Q 046123 1 MKSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK-SLPSTIN 78 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~ 78 (108)
+++|++|++++| .++.+ |..+..+.+| + +|++++|++..+|.. .+++|+.|++++|.... .+|..++
T Consensus 44 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 44 LSKLRILIISHN-RIQYLDISVFKFNQEL---E-----YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp CTTCCEEECCSS-CCCEEEGGGGTTCTTC---C-----EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred cccccEEecCCC-ccCCcChHHhhcccCC---C-----EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhc
Confidence 468999999994 67666 6788899999 9 999999999988876 88999999999965443 4678899
Q ss_pred CCCCCCEEeecCCCCCc
Q 046123 79 GLRSLRTLYLSGCSKLK 95 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~ 95 (108)
.+++|++|++++|....
T Consensus 113 ~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp GCTTCCEEEEEESSCCG
T ss_pred cCCcceEEEecCcccch
Confidence 99999999999976543
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=5.9e-10 Score=76.53 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=3.8
Q ss_pred CCcEEeccC
Q 046123 3 SLKTLVLSG 11 (108)
Q Consensus 3 ~L~~L~l~~ 11 (108)
+|++|++++
T Consensus 64 ~L~~L~L~~ 72 (308)
T 1h6u_A 64 NLIGLELKD 72 (308)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEccC
Confidence 344444444
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=7.7e-10 Score=76.36 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
+|++|++++| .++.++. +..+.+| + +|++++|.+..++ .+..+++|+.|++++| .+..+++ +..+++
T Consensus 67 ~L~~L~l~~n-~i~~~~~-~~~l~~L---~-----~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 67 NLEYLNLNGN-QITDISP-LSNLVKL---T-----NLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTK 133 (347)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTC---C-----EEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTT
T ss_pred CccEEEccCC-ccccchh-hhcCCcC---C-----EEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCc
Confidence 4444455442 3444433 3444444 4 4555544444432 2444455555555442 2333333 444444
Q ss_pred CCEEeecCC
Q 046123 83 LRTLYLSGC 91 (108)
Q Consensus 83 L~~l~l~~~ 91 (108)
|+++++++|
T Consensus 134 L~~L~l~~n 142 (347)
T 4fmz_A 134 MYSLNLGAN 142 (347)
T ss_dssp CCEEECTTC
T ss_pred eeEEECCCC
Confidence 444444444
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=8.7e-10 Score=75.20 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=5.6
Q ss_pred ccCCCCCCEEeecC
Q 046123 77 INGLRSLRTLYLSG 90 (108)
Q Consensus 77 ~~~l~~L~~l~l~~ 90 (108)
+..+++|+++++++
T Consensus 174 l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 174 LAGLTKLQNLYLSK 187 (291)
T ss_dssp GTTCTTCCEEECCS
T ss_pred hcCCCccCEEECCC
Confidence 33333444444443
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.08 E-value=3e-10 Score=78.09 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=44.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.++.. ..+.+| + .|++++|.+..+|+.+..+++|+.|++++| .+..+|+.+..++
T Consensus 169 ~~L~~L~L~~-N~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~ 237 (317)
T 3o53_A 169 DTLEHLNLQY-NFIYDVKGQ-VVFAKL---K-----TLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ 237 (317)
T ss_dssp TTCCEEECTT-SCCCEEECC-CCCTTC---C-----EEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCT
T ss_pred CcCCEEECCC-CcCcccccc-cccccC---C-----EEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCC
Confidence 4555666665 344444322 234555 5 666666666655555555666666666653 4445555555556
Q ss_pred CCCEEeecCCCCC
Q 046123 82 SLRTLYLSGCSKL 94 (108)
Q Consensus 82 ~L~~l~l~~~~~~ 94 (108)
+|+++++++|...
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 6666666665443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=8.7e-10 Score=74.27 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCC---------------
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDC--------------- 67 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~--------------- 67 (108)
+|++|++++ +.++.++ .+..+.+| + .|++++|++..+++ +..+++|+.|++++|
T Consensus 42 ~L~~L~l~~-n~i~~l~-~l~~l~~L---~-----~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~ 110 (263)
T 1xeu_A 42 GVQNFNGDN-SNIQSLA-GMQFFTNL---K-----ELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR 110 (263)
T ss_dssp TCSEEECTT-SCCCCCT-TGGGCTTC---C-----EEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCE
T ss_pred cCcEEECcC-CCcccch-HHhhCCCC---C-----EEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccE
Confidence 455555555 2444444 33444445 4 55555555554443 444455555555442
Q ss_pred -----cCCccccccccCCCCCCEEeecCCC
Q 046123 68 -----KNLKSLPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 68 -----~~~~~lp~~~~~l~~L~~l~l~~~~ 92 (108)
+.+..++ .++.+++|++|++++|.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSC
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCc
Confidence 2233333 35566666777776643
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=1.1e-09 Score=74.68 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=63.7
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++|++|++++ +.++.++. +..+.+| + .|++++|++..+ +.+..+++|+.|++++| .+..+ +.++.+
T Consensus 89 l~~L~~L~l~~-n~l~~~~~-l~~l~~L---~-----~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l 155 (291)
T 1h6t_A 89 LKNLGWLFLDE-NKVKDLSS-LKDLKKL---K-----SLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRL 155 (291)
T ss_dssp CTTCCEEECCS-SCCCCGGG-GTTCTTC---C-----EEECTTSCCCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGC
T ss_pred CCCCCEEECCC-CcCCCChh-hccCCCC---C-----EEECCCCcCCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccC
Confidence 35788888888 45666554 6777778 7 888888888766 35777888888888874 45555 457778
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
++|++|++++|.... ++. +..+++|
T Consensus 156 ~~L~~L~L~~N~l~~-~~~-l~~l~~L 180 (291)
T 1h6t_A 156 TKLDTLSLEDNQISD-IVP-LAGLTKL 180 (291)
T ss_dssp TTCSEEECCSSCCCC-CGG-GTTCTTC
T ss_pred CCCCEEEccCCcccc-chh-hcCCCcc
Confidence 888888888864433 332 5555544
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=6.2e-10 Score=76.84 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++| .++.+ +.+..+.+| + .+++++|.+..++ .+..+++|+.|++++|......|..++.++
T Consensus 243 ~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDI-NAVKDLTKL---K-----MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp TTCCEEECCSS-CCCCC-GGGTTCTTC---C-----EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred CCCCEEECCCC-ccCCC-hhHhcCCCc---C-----EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 34555555552 34443 234445555 5 6666666666553 366667777777777544444555666777
Q ss_pred CCCEEeecCCCCCcccc
Q 046123 82 SLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 82 ~L~~l~l~~~~~~~~~p 98 (108)
+|+++++++|......|
T Consensus 312 ~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCSEEECCSSSCCCCGG
T ss_pred cCCEEEccCCccccccC
Confidence 77777777765444333
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.08 E-value=8.5e-10 Score=75.73 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.++. +..+.+| + .|++++|.+..+++ +..+++|+.|++++| .+..+++ +..++
T Consensus 107 ~~L~~L~l~~-n~l~~~~~-l~~l~~L---~-----~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 107 QSIKTLDLTS-TQITDVTP-LAGLSNL---Q-----VLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLS 173 (308)
T ss_dssp TTCCEEECTT-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred CCCCEEECCC-CCCCCchh-hcCCCCC---C-----EEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCC
Confidence 3555666655 24444432 4444445 4 55555554444333 444444444444442 2333333 33344
Q ss_pred CCCEEeecC
Q 046123 82 SLRTLYLSG 90 (108)
Q Consensus 82 ~L~~l~l~~ 90 (108)
+|+++++++
T Consensus 174 ~L~~L~l~~ 182 (308)
T 1h6u_A 174 KLTTLKADD 182 (308)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 444444444
No 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=6.7e-10 Score=76.92 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=69.3
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccC
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 79 (108)
++|+.|++++++.++.+| ..+..+.+| + .|++++|+++.+++ .|..+++|+.|+|++ +.+..+|+.+..
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L---~-----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGEL---R-----NLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCC---S-----EEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCC---C-----EEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 569999999646788887 678899999 9 99999999997765 589999999999999 567788876544
Q ss_pred CCCCCEEeecCCCCC
Q 046123 80 LRSLRTLYLSGCSKL 94 (108)
Q Consensus 80 l~~L~~l~l~~~~~~ 94 (108)
..+|++|++.+|...
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 444999999997654
No 106
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=1.3e-10 Score=79.73 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=14.3
Q ss_pred EEEecCccccccC-cccccCCCCcEEeccCC
Q 046123 38 SFILEGTAIRGLP-ASIELLSGSVLLNLKDC 67 (108)
Q Consensus 38 ~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~ 67 (108)
+|++++|++..++ ..+..+++|+.|++++|
T Consensus 153 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred EEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 5555555554333 33444555555555543
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=5.5e-10 Score=81.16 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=34.8
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
.|++++|.+..++. ...+++|+.|++++ +.+..+|+.++.+++|+++++++|. +..+|..++.+++|
T Consensus 173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L 239 (487)
T 3oja_A 173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL 239 (487)
T ss_dssp EEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred EEecCCCccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCC
Confidence 44444444443322 22355555555555 3344555556666666666666643 33466555555444
No 108
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.04 E-value=1.6e-09 Score=74.65 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+|++|++++ +.++.++ ..+..+.+| + .|++++|.+..+++ .+..+++|+.|++++| .+..+|.+++.+
T Consensus 194 ~L~~L~l~~-n~i~~~~~~~l~~l~~L---~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l 263 (332)
T 2ft3_A 194 TLNELHLDH-NKIQAIELEDLLRYSKL---Y-----RLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL 263 (332)
T ss_dssp SCSCCBCCS-SCCCCCCTTSSTTCTTC---S-----CCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC
T ss_pred CCCEEECCC-CcCCccCHHHhcCCCCC---C-----EEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC
Confidence 455566665 3444443 445555555 5 55555555554433 3555555555555552 344555555555
Q ss_pred CCCCEEeecCC
Q 046123 81 RSLRTLYLSGC 91 (108)
Q Consensus 81 ~~L~~l~l~~~ 91 (108)
++|+++++++|
T Consensus 264 ~~L~~L~l~~N 274 (332)
T 2ft3_A 264 KLLQVVYLHTN 274 (332)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 55555555554
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.04 E-value=1e-09 Score=80.48 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=69.3
Q ss_pred CCCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccc--cccc
Q 046123 1 MKSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL--PSTI 77 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l--p~~~ 77 (108)
+++|++|++++| .++.+ |..+..+.+| + +|++++|++..+|.. .+++|+.|++++|. +..+ |..+
T Consensus 75 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~ 142 (562)
T 3a79_B 75 LSELRVLRLSHN-RIRSLDFHVFLFNQDL---E-----YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEF 142 (562)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTC---C-----EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGG
T ss_pred CCCccEEECCCC-CCCcCCHHHhCCCCCC---C-----EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhh
Confidence 468999999994 67776 6778889999 9 999999999999877 89999999999954 5554 5789
Q ss_pred cCCCCCCEEeecCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~ 94 (108)
+++++|++|++++|...
T Consensus 143 ~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 143 GNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp GGCTTCCEEEEECSBCC
T ss_pred cccCcccEEecCCCccc
Confidence 99999999999997544
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=1.4e-10 Score=84.23 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.+|.. ..+++| + .|++++|.+..+|+.+..+++|+.|++++ +.+..+|+.++.++
T Consensus 169 ~~L~~L~Ls~-N~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 169 DTLEHLNLQY-NFIYDVKGQ-VVFAKL---K-----TLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQ 237 (487)
T ss_dssp TTCCEEECTT-SCCCEEECC-CCCTTC---C-----EEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCT
T ss_pred CcccEEecCC-Ccccccccc-ccCCCC---C-----EEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCC
Confidence 4667777777 345555432 346677 7 99999999999998899999999999999 45778999999999
Q ss_pred CCCEEeecCCCCC-cccccCcCCC
Q 046123 82 SLRTLYLSGCSKL-KNVPETLGKV 104 (108)
Q Consensus 82 ~L~~l~l~~~~~~-~~~p~~~~~l 104 (108)
+|+++++++|... ..+|..+..+
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred CCCEEEcCCCCCcCcchHHHHHhC
Confidence 9999999998765 4555555544
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=5.7e-12 Score=81.46 Aligned_cols=78 Identities=23% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.+| .+..+.+| + .|++++|.+..+|..+..+++|+.|++++| .+..+| +++.++
T Consensus 48 ~~L~~L~ls~-n~l~~l~-~~~~l~~L---~-----~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 48 KACKHLALST-NNIEKIS-SLSGMENL---R-----ILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV 115 (198)
T ss_dssp TTCSEEECSE-EEESCCC-CHHHHTTC---C-----EEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHH
T ss_pred CCCCEEECCC-CCCcccc-ccccCCCC---C-----EEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCC
Confidence 4566666666 3455555 55555666 6 666666666666555555556666666653 344444 344555
Q ss_pred CCCEEeecCC
Q 046123 82 SLRTLYLSGC 91 (108)
Q Consensus 82 ~L~~l~l~~~ 91 (108)
+|+++++++|
T Consensus 116 ~L~~L~l~~N 125 (198)
T 1ds9_A 116 NLRVLYMSNN 125 (198)
T ss_dssp HSSEEEESEE
T ss_pred CCCEEECCCC
Confidence 5555555553
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=1.7e-09 Score=77.80 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=47.3
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.+++ +..+.+| + +|++++|.+..+++ +..+++|+.|++++| .+..+++ ++.++
T Consensus 68 ~~L~~L~Ls~-n~l~~~~~-~~~l~~L---~-----~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 68 NNLTQINFSN-NQLTDITP-LKNLTKL---V-----DILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLT 134 (466)
T ss_dssp TTCCEEECCS-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred cCCCEEECCC-CccCCchh-hhccccC---C-----EEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCC
Confidence 4566666666 34555554 5556666 6 66666666665554 666666666666663 3445544 66666
Q ss_pred CCCEEeecCCC
Q 046123 82 SLRTLYLSGCS 92 (108)
Q Consensus 82 ~L~~l~l~~~~ 92 (108)
+|++|++++|.
T Consensus 135 ~L~~L~l~~n~ 145 (466)
T 1o6v_A 135 NLNRLELSSNT 145 (466)
T ss_dssp TCSEEEEEEEE
T ss_pred CCCEEECCCCc
Confidence 66666666643
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=4.2e-09 Score=78.63 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=5.9
Q ss_pred ccCCCCCCEEeecC
Q 046123 77 INGLRSLRTLYLSG 90 (108)
Q Consensus 77 ~~~l~~L~~l~l~~ 90 (108)
+..+++|++|++++
T Consensus 171 l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 171 LAGLTKLQNLYLSK 184 (605)
T ss_dssp GTTCTTCCEEECCS
T ss_pred hccCCCCCEEECcC
Confidence 33344444444444
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.97 E-value=3e-09 Score=76.79 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|++|++++ +.++.+| .+..+.+| + +|++++|.+..+| ++.+++|+.|++++| .+..+| ++.++
T Consensus 42 ~~L~~L~Ls~-n~l~~~~-~l~~l~~L---~-----~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHN-SSITDMT-GIEKLTGL---T-----KLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT 106 (457)
T ss_dssp TTCCEEECCS-SCCCCCT-TGGGCTTC---S-----EEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred CCCCEEEccC-CCcccCh-hhcccCCC---C-----EEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence 4567777777 3566665 45666666 6 7777777666654 566666666666663 344443 55666
Q ss_pred CCCEEeecCCC
Q 046123 82 SLRTLYLSGCS 92 (108)
Q Consensus 82 ~L~~l~l~~~~ 92 (108)
+|+++++++|.
T Consensus 107 ~L~~L~L~~N~ 117 (457)
T 3bz5_A 107 KLTYLNCDTNK 117 (457)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 66666666643
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=7.6e-12 Score=80.88 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc--cccC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS--TING 79 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~ 79 (108)
++|++|++++ +.++.+|..+..+++| + .|++++|++..+| .+..+++|+.|++++| .+..++. .+..
T Consensus 70 ~~L~~L~l~~-n~l~~l~~~~~~~~~L---~-----~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 70 ENLRILSLGR-NLIKKIENLDAVADTL---E-----ELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAA 138 (198)
T ss_dssp TTCCEEEEEE-EEECSCSSHHHHHHHC---S-----EEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTT
T ss_pred CCCCEEECCC-CCcccccchhhcCCcC---C-----EEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhc
Confidence 6799999999 5788888877777889 9 9999999999876 6889999999999994 5666554 6888
Q ss_pred CCCCCEEeecCCCCCcccc
Q 046123 80 LRSLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p 98 (108)
+++|+++++++|......|
T Consensus 139 l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp TTTCSEEEECSCHHHHHHH
T ss_pred CCCCCEEEecCCccccccc
Confidence 9999999999976544444
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=75.09 Aligned_cols=90 Identities=19% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccc---cCcc--cccCCCCcEEeccCCcCCccccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRG---LPAS--IELLSGSVLLNLKDCKNLKSLPS 75 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~---~p~~--~~~l~~L~~L~l~~~~~~~~lp~ 75 (108)
++|++|++++| .+..++ ..+..+.+| + +|++++|++.. ++.. +..+++|+.|++++| .+..++.
T Consensus 145 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 214 (310)
T 4glp_A 145 PGLKVLSIAQA-HSPAFSCEQVRAFPAL---T-----SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG 214 (310)
T ss_dssp SCCCEEEEECC-SSCCCCTTSCCCCTTC---C-----EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH
T ss_pred cCCCEEEeeCC-CcchhhHHHhccCCCC---C-----EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH
Confidence 45666666663 444443 455566666 6 66666665432 2211 244555555555553 2333332
Q ss_pred ----cccCCCCCCEEeecCCCCCcccccCc
Q 046123 76 ----TINGLRSLRTLYLSGCSKLKNVPETL 101 (108)
Q Consensus 76 ----~~~~l~~L~~l~l~~~~~~~~~p~~~ 101 (108)
.++.+++|++|++++|......|..+
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 12444555666665544444334443
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.92 E-value=8.3e-09 Score=77.04 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++|+.|++++ +.+..+| .+..+.+| + .|++++|++..++ .+..+++|+.|++++| .+..+ +.++.+
T Consensus 86 l~~L~~L~Ls~-N~l~~l~-~l~~l~~L---~-----~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l 152 (605)
T 1m9s_A 86 LKNLGWLFLDE-NKIKDLS-SLKDLKKL---K-----SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRL 152 (605)
T ss_dssp CTTCCEEECCS-SCCCCCT-TSTTCTTC---C-----EEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSC
T ss_pred CCCCCEEECcC-CCCCCCh-hhccCCCC---C-----EEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhccc
Confidence 35677788877 3566655 45667777 7 7777777777653 4777777888888774 45555 456777
Q ss_pred CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 81 RSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
++|++|++++|......| +..+++|
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred CCCCEEECcCCcCCCchh--hccCCCC
Confidence 777888877765443333 4444444
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.91 E-value=5.8e-09 Score=71.36 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCCcEEeccCCcCCCcCCccc--CCccccccccCcceeEEEecCcccccc-C----cccccCCCCcEEeccCCcCCcccc
Q 046123 2 KSLKTLVLSGCLKLKKFPDIV--GKSSQRKLQAGISSWSFILEGTAIRGL-P----ASIELLSGSVLLNLKDCKNLKSLP 74 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~--~~~~~L~~~~~~~~~~l~l~~~~~~~~-p----~~~~~l~~L~~L~l~~~~~~~~lp 74 (108)
++|++|++++|...+..|..+ ..+.+| + .|++++|.+... + ..+..+++|+.|++++|......|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L---~-----~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLAL---S-----SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCC---S-----SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCC---C-----EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 357888888854344456555 667777 7 788888877632 2 224467788888888755433344
Q ss_pred ccccCCCCCCEEeecCCCCC
Q 046123 75 STINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 75 ~~~~~l~~L~~l~l~~~~~~ 94 (108)
..++.+++|++|++++|...
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTC
T ss_pred HHhccCCCCCEEECCCCCCc
Confidence 56777778888888876543
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=7.6e-09 Score=74.35 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=11.5
Q ss_pred EEEecCccccccCcccccCCCCcEEeccC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKD 66 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~ 66 (108)
.|++++|.+..+++ +..+++|+.|++++
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCC
Confidence 44444444443332 33444444444444
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.90 E-value=1.1e-08 Score=73.76 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123 1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+++|++|++++ +.++.+| ++.+.+| + +|++++|.+..++ ++.+++|+.|++++| .+..+| ++.+
T Consensus 63 l~~L~~L~Ls~-n~l~~~~--~~~l~~L---~-----~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l 126 (457)
T 3bz5_A 63 LTGLTKLICTS-NNITTLD--LSQNTNL---T-----YLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQN 126 (457)
T ss_dssp CTTCSEEECCS-SCCSCCC--CTTCTTC---S-----EEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTC
T ss_pred cCCCCEEEccC-CcCCeEc--cccCCCC---C-----EEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCC
Confidence 35677777777 3566664 5666666 6 7777777766653 666677777777764 344443 5566
Q ss_pred CCCCEEeecCCC
Q 046123 81 RSLRTLYLSGCS 92 (108)
Q Consensus 81 ~~L~~l~l~~~~ 92 (108)
++|+++++++|.
T Consensus 127 ~~L~~L~l~~N~ 138 (457)
T 3bz5_A 127 PLLTYLNCARNT 138 (457)
T ss_dssp TTCCEEECTTSC
T ss_pred CcCCEEECCCCc
Confidence 666666666643
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.90 E-value=1.2e-09 Score=81.21 Aligned_cols=59 Identities=15% Similarity=0.344 Sum_probs=32.4
Q ss_pred EEEecCccccccCcccccCCCC-------cEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccC
Q 046123 38 SFILEGTAIRGLPASIELLSGS-------VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET 100 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L-------~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~ 100 (108)
.|++++|.++.+|. +.. +| +.|++++ +.+..+|..++.+++|+++++++|......|..
T Consensus 184 ~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp EEECCSSCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred EEECcCCCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 56666666555555 333 45 6666666 345556666656666666666665555554443
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.87 E-value=1.9e-09 Score=74.01 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=27.2
Q ss_pred EEEecCcc--c--cccCcccccCCCCcEEeccCCcCC-ccccccccCCCCCCEEeecCC
Q 046123 38 SFILEGTA--I--RGLPASIELLSGSVLLNLKDCKNL-KSLPSTINGLRSLRTLYLSGC 91 (108)
Q Consensus 38 ~l~l~~~~--~--~~~p~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~l~l~~~ 91 (108)
.|++++|. + ..++..+..+++|+.|++++|..+ ...++.++.+++|++|++++|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555552 2 233444445555555555554422 234445555556666666655
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.86 E-value=1.3e-08 Score=70.82 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCcccc-ccCcc-cccCCCCcEEeccCCcCCcccc-cccc
Q 046123 3 SLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIR-GLPAS-IELLSGSVLLNLKDCKNLKSLP-STIN 78 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~ 78 (108)
++++|++++ +.++.+|. .+..+.+| + +|++++|.+. .+|.. |.+++++..+...+++.+..++ ..|.
T Consensus 31 ~l~~L~Ls~-N~i~~i~~~~f~~l~~L---~-----~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 31 NAIELRFVL-TKLRVIQKGAFSGFGDL---E-----KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TCSEEEEES-CCCSEECTTSSTTCTTC---C-----EEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCEEEccC-CcCCCcCHHHHcCCCCC---C-----EEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 466777777 46666663 45666777 6 7777777654 44433 5666666554443334555553 4566
Q ss_pred CCCCCCEEeecCCC
Q 046123 79 GLRSLRTLYLSGCS 92 (108)
Q Consensus 79 ~l~~L~~l~l~~~~ 92 (108)
.+++|+++++++|.
T Consensus 102 ~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 102 NLPNLQYLLISNTG 115 (350)
T ss_dssp CCTTCCEEEEEEEC
T ss_pred hccccccccccccc
Confidence 77777777777744
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=9.2e-09 Score=76.44 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123 2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR 81 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 81 (108)
++|+.|++++ +.++.+|. .+.+| + .|++++|.+..+|. +. ++|+.|++++| .+..+|. +..
T Consensus 140 ~~L~~L~Ls~-N~l~~lp~---~l~~L---~-----~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~-- 200 (571)
T 3cvr_A 140 ALLEYINADN-NQLTMLPE---LPTSL---E-----VLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV-- 200 (571)
T ss_dssp TTCCEEECCS-SCCSCCCC---CCTTC---C-----EEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC---
T ss_pred ccccEEeCCC-CccCcCCC---cCCCc---C-----EEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--
Confidence 3455566655 34555554 24455 5 67777777666666 44 67777777773 4556666 543
Q ss_pred CC-------CEEeecCCCCCcccccCcCCCCCC
Q 046123 82 SL-------RTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 82 ~L-------~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+| ++|++++| .+..+|..+..+++|
T Consensus 201 ~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 201 RNHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp -------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 56 77777774 445677665556554
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=5.1e-09 Score=78.47 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=31.0
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccc
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p 98 (108)
.|++++|.++.+|. .+++|+.|++++| .+..+|+.++.+++|+++++++|...+..|
T Consensus 245 ~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 245 ELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred EEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 55555555555544 3455566666553 344556556666666666666655444333
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.81 E-value=1.7e-08 Score=70.27 Aligned_cols=93 Identities=12% Similarity=0.226 Sum_probs=65.5
Q ss_pred cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCC
Q 046123 5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRS 82 (108)
Q Consensus 5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 82 (108)
++++-++ +.++++|..+. .++ + .|++++|+++.+|+. |.++++|+.|++++|...+.+|+ +|.++++
T Consensus 12 ~~v~C~~-~~Lt~iP~~l~--~~l---~-----~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDLP--RNA---I-----ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEES-TTCCSCCTTCC--TTC---S-----EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecC-CCCCccCcCcC--CCC---C-----EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 4555566 56888886552 467 7 888999999888865 88899999999998665566665 5678888
Q ss_pred CCEEeecCCCCCccc-ccCcCCCCCCC
Q 046123 83 LRTLYLSGCSKLKNV-PETLGKVESLE 108 (108)
Q Consensus 83 L~~l~l~~~~~~~~~-p~~~~~l~~L~ 108 (108)
+..+...+++.+..+ |+.|+.+++|+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred hhhhhcccCCcccccCchhhhhccccc
Confidence 765444443445555 56677777764
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.80 E-value=2e-09 Score=73.91 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=24.4
Q ss_pred EEEecCcccc-ccCcccccCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCC
Q 046123 38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGC 91 (108)
Q Consensus 38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~ 91 (108)
.|++++|.+. ..+..+..+++|+.|++++|..+.. ++..+..+++|++|++++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 4555444444 3333344445555555554433331 3333444455555555554
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=3e-08 Score=71.51 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS 82 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 82 (108)
+|++|++++ +.++.+| .++.+.+| + ++++++|++..+|..+ .+|+.|++++| .+..+| +++++++
T Consensus 132 ~L~~L~L~~-n~l~~lp-~~~~l~~L---~-----~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~ 196 (454)
T 1jl5_A 132 LLEYLGVSN-NQLEKLP-ELQNSSFL---K-----IIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPF 196 (454)
T ss_dssp TCCEEECCS-SCCSSCC-CCTTCTTC---C-----EEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTT
T ss_pred CCCEEECcC-CCCCCCc-ccCCCCCC---C-----EEECCCCcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCC
Confidence 344444444 2333444 24444444 4 4444444444433221 23444444442 233333 2444444
Q ss_pred CCEEeecC
Q 046123 83 LRTLYLSG 90 (108)
Q Consensus 83 L~~l~l~~ 90 (108)
|+++++++
T Consensus 197 L~~L~l~~ 204 (454)
T 1jl5_A 197 LTAIYADN 204 (454)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 44444444
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.78 E-value=1.1e-08 Score=73.80 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc--cccccccCC
Q 046123 3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK--SLPSTINGL 80 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l 80 (108)
+|++|++++ +.++.+|.. +.+| + .+++++|.++.+|. .+++|+.|++++|...+ .+|.+++.+
T Consensus 318 ~L~~L~Ls~-N~l~~lp~~---~~~L---~-----~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 318 SLEELNVSN-NKLIELPAL---PPRL---E-----RLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCS-SCCSCCCCC---CTTC---C-----EEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCEEECCC-Ccccccccc---CCcC---C-----EEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 455555555 334444432 2445 5 66666666666655 35667777777654433 455566555
Q ss_pred -------------CCCCEEeecCCCCCc--ccccCcCC
Q 046123 81 -------------RSLRTLYLSGCSKLK--NVPETLGK 103 (108)
Q Consensus 81 -------------~~L~~l~l~~~~~~~--~~p~~~~~ 103 (108)
++|+++++++|...+ .+|..++.
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp ECCC----------------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 567777777655444 55554443
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=5.4e-08 Score=67.09 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=76.9
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCc-EEeccCCcCCcccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSV-LLNLKDCKNLKSLP-STI 77 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~lp-~~~ 77 (108)
++|+.+++++ +.++.+| ..+..+.+| + .+++..| +..+++. |.++.+|+ .+++.+ .+..++ .+|
T Consensus 226 ~~L~~l~L~~-n~i~~I~~~aF~~~~~L---~-----~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 226 PNLVSLDISK-TNATTIPDFTFAQKKYL---L-----KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp TTCCEEECTT-BCCCEECTTTTTTCTTC---C-----EEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT
T ss_pred CCCeEEECCC-CCcceecHhhhhCCCCC---C-----EEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhh
Confidence 5799999998 5688887 567889999 9 9999887 8778765 99999999 999987 466665 589
Q ss_pred cCCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123 78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESLE 108 (108)
Q Consensus 78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~ 108 (108)
.++.+|+.++++.|+ +..++ ..|.++++|+
T Consensus 294 ~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 294 MGCDNLRYVLATGDK-ITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCTTEEEEEECSSC-CCEECTTTTCTTCCCC
T ss_pred hCCccCCEEEeCCCc-cCccchhhhcCCcchh
Confidence 999999999998854 45554 5788888875
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=5.9e-08 Score=72.74 Aligned_cols=63 Identities=29% Similarity=0.315 Sum_probs=45.5
Q ss_pred EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123 38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~ 108 (108)
.|++++|.++.+| ..+++|+.|++++| .+..+|. .+++|++|++++|. +..+|..+.++++|+
T Consensus 225 ~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 225 ELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSET 287 (622)
T ss_dssp EEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTC
T ss_pred EEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccC
Confidence 7777777777666 34577888888884 5667776 46778899998864 457888787777664
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.70 E-value=4.3e-09 Score=73.87 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.3
Q ss_pred CcccccCCCCcEEeccC
Q 046123 50 PASIELLSGSVLLNLKD 66 (108)
Q Consensus 50 p~~~~~l~~L~~L~l~~ 66 (108)
|..+..+++|+.|++++
T Consensus 237 ~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 237 AIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHGGGCTTCCEEECTT
T ss_pred HHHHccCCCcCEEECCC
Confidence 33344444444444444
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.58 E-value=1.9e-08 Score=70.59 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCCcEEeccCCcCCC--cCC---cccCCccccccccCcceeEEEecCcccc------ccCcccccCCCCcEEeccCCcCC
Q 046123 2 KSLKTLVLSGCLKLK--KFP---DIVGKSSQRKLQAGISSWSFILEGTAIR------GLPASIELLSGSVLLNLKDCKNL 70 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~--~~p---~~~~~~~~L~~~~~~~~~~l~l~~~~~~------~~p~~~~~l~~L~~L~l~~~~~~ 70 (108)
++|++|++++| .++ .++ ..+..+.+| + .|++++|++. .++..+..+++|+.|++++|...
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L---~-----~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLL---H-----TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC---C-----EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc---C-----EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 57888888884 443 233 344456677 7 8899888877 23336788889999999886532
Q ss_pred ----ccccccccCCCCCCEEeecCCCCCcc
Q 046123 71 ----KSLPSTINGLRSLRTLYLSGCSKLKN 96 (108)
Q Consensus 71 ----~~lp~~~~~l~~L~~l~l~~~~~~~~ 96 (108)
..+|..+..+++|++|++++|.....
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 55777788888888888888765443
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.29 E-value=1.4e-07 Score=65.85 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCcEEeccCCcCCCcCC-----cccCCcc-ccccccCcceeEEEecCcccccc-CcccccC-----CCCcEEeccCC
Q 046123 3 SLKTLVLSGCLKLKKFP-----DIVGKSS-QRKLQAGISSWSFILEGTAIRGL-PASIELL-----SGSVLLNLKDC 67 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-----~~~~~~~-~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l-----~~L~~L~l~~~ 67 (108)
+|++|++++| .++..+ ..+..++ +| + .|++++|.+... +..+..+ ++|+.|++++|
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L---~-----~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASV---T-----SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTC---C-----EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCce---e-----EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3666666663 344443 2333344 45 5 566666655533 2223332 55555555554
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.25 E-value=1.7e-07 Score=66.68 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCcccccc-Cccccc-----CCCCcEEeccCCcCCc
Q 046123 3 SLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIEL-----LSGSVLLNLKDCKNLK 71 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~-----l~~L~~L~l~~~~~~~ 71 (108)
+|++|++++|. ++. ++..+..+++| + .+++++|.+... +..+.. .++|+.|++++|....
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L---~-----~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFL---L-----ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSC---C-----EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCc---c-----EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 45556665532 322 23333344566 6 777777766532 222221 4577777777754322
Q ss_pred ----cccccccCCCCCCEEeecCCCCC
Q 046123 72 ----SLPSTINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 72 ----~lp~~~~~l~~L~~l~l~~~~~~ 94 (108)
.+|.++..+++|+++++++|...
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 56666667777777887776543
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.8e-06 Score=58.75 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=30.3
Q ss_pred EEEecCccccccC---cccccCCCCcEEeccCCcCCccccccccCCC--CCCEEeecCCCCCccc
Q 046123 38 SFILEGTAIRGLP---ASIELLSGSVLLNLKDCKNLKSLPSTINGLR--SLRTLYLSGCSKLKNV 97 (108)
Q Consensus 38 ~l~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~l~l~~~~~~~~~ 97 (108)
.|++++|++..++ ..+..+++|+.|++++| .+..+. .+..+. +|++|++++|.....+
T Consensus 174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred EEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 6666666665432 33455666666666663 344332 122222 5666666665554433
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.21 E-value=1.3e-07 Score=67.20 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=4.5
Q ss_pred CCcEEeccC
Q 046123 3 SLKTLVLSG 11 (108)
Q Consensus 3 ~L~~L~l~~ 11 (108)
+|++|++++
T Consensus 200 ~L~~L~L~~ 208 (461)
T 1z7x_W 200 QLEALKLES 208 (461)
T ss_dssp CCCEEECTT
T ss_pred CceEEEccC
Confidence 445555555
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=1e-06 Score=56.56 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=59.2
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcc-ccc-cCcccccC----CCCcEEeccCCcCCccc-c
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTA-IRG-LPASIELL----SGSVLLNLKDCKNLKSL-P 74 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~-~p~~~~~l----~~L~~L~l~~~~~~~~l-p 74 (108)
.|+.||+++|. +++.. ..+..+.+| + .|++++|. ++. --..+..+ ++|+.|++++|..+.+- -
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L---~-----~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYV---E-----KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCC---C-----EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCC---C-----EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 47889999975 65543 455678888 8 99998884 652 22334443 46999999998877652 1
Q ss_pred ccccCCCCCCEEeecCCCCCcc
Q 046123 75 STINGLRSLRTLYLSGCSKLKN 96 (108)
Q Consensus 75 ~~~~~l~~L~~l~l~~~~~~~~ 96 (108)
..+..+++|++|++++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 3466788999999999876543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=1.3e-05 Score=55.07 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=42.3
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCC-EEeecCCCCCccc-ccCcCCCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLR-TLYLSGCSKLKNV-PETLGKVESL 107 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~-~l~l~~~~~~~~~-p~~~~~l~~L 107 (108)
.+++++|++..+++. |.++.+|+.+++.++ +..+++ +|.++.+|+ .+++.+ + +..+ +..|.++.+|
T Consensus 230 ~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNL 299 (329)
T ss_dssp EEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTE
T ss_pred EEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccC
Confidence 777777777766655 777777777777763 555554 567777777 777766 3 3333 3456666554
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.11 E-value=5.9e-07 Score=62.61 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=58.6
Q ss_pred EeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-----cccccCC-CCcEEeccCCcCCccccccccCC
Q 046123 7 LVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-----ASIELLS-GSVLLNLKDCKNLKSLPSTINGL 80 (108)
Q Consensus 7 L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l 80 (108)
+.+++++..+.+|..+....++ + .|++++|.+...+ ..+..++ +|+.|++++|......+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L---~-----~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGV---T-----SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTC---C-----EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccchHHHHHHHhCCCCc---e-----EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 5677743333445555555668 8 9999999998766 4577888 89999999965433345555554
Q ss_pred -----CCCCEEeecCCCCCcccc
Q 046123 81 -----RSLRTLYLSGCSKLKNVP 98 (108)
Q Consensus 81 -----~~L~~l~l~~~~~~~~~p 98 (108)
++|++|++++|......+
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhccCCCccEEECcCCcCChHHH
Confidence 789999999976544433
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.03 E-value=4.2e-06 Score=61.16 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=11.4
Q ss_pred ccccccCCCCCCEEeecCCC
Q 046123 73 LPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 73 lp~~~~~l~~L~~l~l~~~~ 92 (108)
+|..+..+++|++|++++|.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC
T ss_pred HHHHHhhcCCCcEEecCCCc
Confidence 34444455566666666655
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.01 E-value=2.6e-06 Score=62.30 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=24.7
Q ss_pred EEEecCcccc-----ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeec
Q 046123 38 SFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLS 89 (108)
Q Consensus 38 ~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 89 (108)
.|++++|.+. .++..+..+++|+.|++++|. +..+|..+..+++|++++++
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 5555555543 222224455666666666532 33344444444445555444
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.01 E-value=4.5e-07 Score=66.31 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=6.0
Q ss_pred CCCCCEEeecCC
Q 046123 80 LRSLRTLYLSGC 91 (108)
Q Consensus 80 l~~L~~l~l~~~ 91 (108)
+++|++|++++|
T Consensus 210 ~~~L~~L~L~~~ 221 (594)
T 2p1m_B 210 CPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCcEEecCCC
Confidence 344555555544
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=1.2e-05 Score=54.65 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCCcEEeccCCcCCCcC---CcccCCccccccccCcceeEEEecCccccccCcccccCC--CCcEEeccCCcCCccccc
Q 046123 1 MKSLKTLVLSGCLKLKKF---PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLS--GSVLLNLKDCKNLKSLPS 75 (108)
Q Consensus 1 l~~L~~L~l~~~~~~~~~---p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~--~L~~L~l~~~~~~~~lp~ 75 (108)
+++|++|++++ |.+..+ |..+..+++| + .|++++|.++.+ ..+..+. +|+.|++.+|+....+|.
T Consensus 169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L---~-----~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNL---K-----ILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp CTTCCEEECTT-SCCCCCGGGTTHHHHSTTC---C-----EEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred CCCCCEEECCC-CCCCCCccchhHHhhCCCC---C-----EEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 46899999999 566654 4555678899 9 999999999976 3345554 999999999775555552
Q ss_pred -------cccCCCCCCEEe
Q 046123 76 -------TINGLRSLRTLY 87 (108)
Q Consensus 76 -------~~~~l~~L~~l~ 87 (108)
.+..+++|+.||
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 356678888886
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.85 E-value=4.4e-06 Score=61.06 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEEecCcccc-ccCcccc-cCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCCC
Q 046123 38 SFILEGTAIR-GLPASIE-LLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 38 ~l~l~~~~~~-~~p~~~~-~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~ 92 (108)
.|+++++.+. ..+..+. .+++|+.|++.+|..+.. ++..+.++++|++|++++|.
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 6666666554 2223332 455666666665543333 33333345556666665543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.76 E-value=7.6e-06 Score=57.69 Aligned_cols=56 Identities=20% Similarity=0.036 Sum_probs=27.1
Q ss_pred EEEecCccccc-----cCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCCC
Q 046123 38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCSK 93 (108)
Q Consensus 38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~ 93 (108)
+|++++|.+.. ++..+...++|+.|++++|.... .+..++...++|++|++++|..
T Consensus 187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 66666665542 12334445556666666543211 1223333445566666666543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=3.4e-06 Score=59.50 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred EEEecCccccc-----cCcccccCCCCcEEeccCCcCCcc-----ccccccCCCCCCEEeecCCCCC
Q 046123 38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLKS-----LPSTINGLRSLRTLYLSGCSKL 94 (108)
Q Consensus 38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~l~l~~~~~~ 94 (108)
.|++++|.+.. ++..+..+++|+.|++++|. +.. +..++...++|++|++++|...
T Consensus 159 ~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 66666666542 23334556667777777643 332 2444555566777777776543
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.46 E-value=9.9e-05 Score=47.24 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=48.9
Q ss_pred eeEEEecCccccc-cCcccccCCCCcEEeccCCcCCccc-cccccCC----CCCCEEeecCCCCCcc-cccCcCCCCCC
Q 046123 36 SWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSL-PSTINGL----RSLRTLYLSGCSKLKN-VPETLGKVESL 107 (108)
Q Consensus 36 ~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~l~l~~~~~~~~-~p~~~~~l~~L 107 (108)
|+.+|++++.++. --..+.++++|+.|++++|..+.+- -..+..+ ++|++|++++|..++. --..+.++++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4499999998773 2345789999999999999876642 1234443 3799999999975543 22233444444
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=5.6e-05 Score=48.18 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=49.5
Q ss_pred CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123 2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK 71 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~ 71 (108)
++|++|++++|..+.. +...+....++ + +|++++|.+.. +...+...+.|+.|++++|. ++
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L---~-----~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYV---K-----KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC---C-----EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCc---C-----EEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4677888887524433 23334445566 6 78888777652 23334555677888887754 33
Q ss_pred c-----ccccccCCCCCCEEee--cCCCC
Q 046123 72 S-----LPSTINGLRSLRTLYL--SGCSK 93 (108)
Q Consensus 72 ~-----lp~~~~~l~~L~~l~l--~~~~~ 93 (108)
. +..++...++|++|++ ++|..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 2 3445666667777777 55543
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.44 E-value=0.00093 Score=47.48 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=17.7
Q ss_pred cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCC
Q 046123 53 IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGC 91 (108)
Q Consensus 53 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~ 91 (108)
|.++.+|+.+.+.. .+..+. .+|.++ +|+.+++.+|
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 44555555555543 133332 245555 5666666554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.41 E-value=0.0011 Score=47.16 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=8.6
Q ss_pred cccCCCCCCEEeecC
Q 046123 76 TINGLRSLRTLYLSG 90 (108)
Q Consensus 76 ~~~~l~~L~~l~l~~ 90 (108)
+|.++.+|+.+++.+
T Consensus 266 aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 266 AFYYCPELAEVTTYG 280 (401)
T ss_dssp TTTTCTTCCEEEEES
T ss_pred HhhCCCCCCEEEeCC
Confidence 455555666666655
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=0.00014 Score=46.24 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEec--cCCcC
Q 046123 2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNL--KDCKN 69 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l--~~~~~ 69 (108)
++|++|++++| .+.+ +...+.....| + .|++++|.+.. +...+...+.|+.|++ ++|.
T Consensus 65 ~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L---~-----~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~- 134 (185)
T 1io0_A 65 TYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL---K-----SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP- 134 (185)
T ss_dssp CSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC---C-----EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-
T ss_pred CCcCEEECcCC-CCChHHHHHHHHHHHhCCCc---C-----EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-
Confidence 46888999985 4543 22333344567 7 89999998763 4455677788999999 6644
Q ss_pred Ccc-----ccccccCCCCCCEEeecCCC
Q 046123 70 LKS-----LPSTINGLRSLRTLYLSGCS 92 (108)
Q Consensus 70 ~~~-----lp~~~~~l~~L~~l~l~~~~ 92 (108)
++. +...+...++|+++++++|.
T Consensus 135 i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 135 LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 432 34455556789999998864
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.0011 Score=40.08 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=40.5
Q ss_pred EEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcC
Q 046123 6 TLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKN 69 (108)
Q Consensus 6 ~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~ 69 (108)
.++-++ +.++ .+|..+. .++ + .|++++|+++.+|.. |..+++|+.+++.+|+.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDT---T-----ELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTC---S-----EEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCCC--cCC---C-----EEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566666 5677 7885433 356 7 899999999988776 78889999999998653
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.99 E-value=0.0073 Score=41.90 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=22.4
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeec
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLS 89 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~ 89 (108)
.+.+.++.+..+++. |.++.+|+.+.+.. .+..+.+ +|.++.+|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 444444444444332 44555555555543 1333332 44445555554443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.0052 Score=42.63 Aligned_cols=93 Identities=11% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123 2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN 78 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~ 78 (108)
..|+.+.+.. .++.++ ..+..+..+ + .+.+..+ +..++.. |.++.+|+.+.+.+ ..+..+++ +|.
T Consensus 240 ~~L~~i~lp~--~v~~I~~~aF~~~~~l---~-----~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~ 307 (379)
T 4h09_A 240 KALDEIAIPK--NVTSIGSFLLQNCTAL---K-----TLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFM 307 (379)
T ss_dssp SSCCEEEECT--TCCEECTTTTTTCTTC---C-----EEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTT
T ss_pred ccceEEEcCC--CccEeCccccceeehh---c-----ccccccc-ceeccccccccccccccccccc-cccceehhhhhc
Confidence 3466666654 355554 455667778 7 8877543 6666554 88999999999987 45666654 788
Q ss_pred CCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123 79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESLE 108 (108)
Q Consensus 79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~ 108 (108)
++.+|+.+.+.. + ++.+. ..|.++++|+
T Consensus 308 ~c~~L~~i~lp~-~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 308 DCVKLSSVTLPT-A-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TCTTCCEEECCT-T-CCEECTTTTTTCTTCC
T ss_pred CCCCCCEEEcCc-c-ccEEHHHHhhCCCCCC
Confidence 899999999975 2 45554 4577776653
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.93 E-value=0.0089 Score=41.86 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=15.9
Q ss_pred cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeec
Q 046123 53 IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLS 89 (108)
Q Consensus 53 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~ 89 (108)
|.++.+|+.+.+.+ .+..+. .+|.++.+|+.+.+.
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC
T ss_pred ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC
Confidence 44555555555543 133332 244445555555553
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0024 Score=38.54 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=43.0
Q ss_pred EEEecCcccc--ccCcccccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCC
Q 046123 38 SFILEGTAIR--GLPASIELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSK 93 (108)
Q Consensus 38 ~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~ 93 (108)
.++-++++++ .+|..+. .+++.|+|++ +.+..+|+ .|..+.+|+++++++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 6778888888 8887544 4799999999 56888876 467889999999999754
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.90 E-value=0.0026 Score=44.64 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=50.9
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 79 (108)
+|+.+.+.. .++.++ .++..+.+| + .+++..+ +..+.. .|.++.+|+.+.+..+ +..+. .+|.+
T Consensus 298 ~L~~i~l~~--~i~~I~~~aF~~c~~L---~-----~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 298 SLTEVKLLD--SVKFIGEEAFESCTSL---V-----SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TCCEEEECT--TCCEECTTTTTTCTTC---C-----EECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred ccccccccc--ccceechhhhcCCCCC---C-----EEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 445555543 245554 344556666 6 6666433 555543 3777777777777652 45554 36777
Q ss_pred CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123 80 LRSLRTLYLSGCSKLKNVPETLGKVESL 107 (108)
Q Consensus 80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L 107 (108)
+.+|+.+++..+ +..+...|.++.+|
T Consensus 365 C~~L~~i~lp~~--~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 365 CINLKKVELPKR--LEQYRYDFEDTTKF 390 (394)
T ss_dssp CTTCCEEEEEGG--GGGGGGGBCTTCEE
T ss_pred CCCCCEEEECCC--CEEhhheecCCCCC
Confidence 777777777652 33344455555544
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.71 E-value=0.001 Score=46.82 Aligned_cols=13 Identities=8% Similarity=0.186 Sum_probs=6.4
Q ss_pred CCCCCCEEeecCC
Q 046123 79 GLRSLRTLYLSGC 91 (108)
Q Consensus 79 ~l~~L~~l~l~~~ 91 (108)
.+++|+.|++++|
T Consensus 305 ~l~~L~~L~L~~n 317 (362)
T 2ra8_A 305 KIKHLKFINMKYN 317 (362)
T ss_dssp HHTTCSEEECCSB
T ss_pred cCCcceEEECCCC
Confidence 3445555555544
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.51 E-value=0.0036 Score=43.98 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.5
Q ss_pred CCCcEEeccCC
Q 046123 2 KSLKTLVLSGC 12 (108)
Q Consensus 2 ~~L~~L~l~~~ 12 (108)
++|+.|.+++|
T Consensus 172 P~L~~L~L~g~ 182 (362)
T 2ra8_A 172 PLLNNLKIKGT 182 (362)
T ss_dssp TTCCEEEEECC
T ss_pred CCCcEEEEeCC
Confidence 45666666654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.26 E-value=0.025 Score=39.58 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=54.5
Q ss_pred CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccC
Q 046123 3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STING 79 (108)
Q Consensus 3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 79 (108)
.|+.+.+. +.++.++ ..+..+.+| + .+++..+ ++.+... |.++.+|+.+.+.. .+..+. .+|.+
T Consensus 289 ~L~~i~l~--~~i~~I~~~aF~~c~~L---~-----~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~ 355 (394)
T 4gt6_A 289 ALQDIEFS--SRITELPESVFAGCISL---K-----SIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSN 355 (394)
T ss_dssp TCCEEECC--TTCCEECTTTTTTCTTC---C-----EEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTT
T ss_pred ccccccCC--CcccccCceeecCCCCc---C-----EEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhC
Confidence 45555553 2455665 455667788 8 8888654 6666544 89999999999976 266665 47899
Q ss_pred CCCCCEEeecCC
Q 046123 80 LRSLRTLYLSGC 91 (108)
Q Consensus 80 l~~L~~l~l~~~ 91 (108)
+.+|+.+++.++
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 999999999874
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.33 E-value=0.075 Score=37.09 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=46.4
Q ss_pred EEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123 38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCSKLKNVP-ETLGKVESLE 108 (108)
Q Consensus 38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~ 108 (108)
.+.+..+ +..+.+. |.++.+|+.+++.+ .+..+. .+|.++.+|+.+.+..+ +..+. ..|.++.+|+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLK 369 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence 6666543 5556544 88889999999875 366665 47888999999999763 45554 5688877764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.14 E-value=0.041 Score=35.60 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123 2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK 71 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~ 71 (108)
++|+.|++++++.+.+ +-+.+..-..| + .|++++|++.. +.+.+..-+.|+.|++++|. ++
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L---~-----~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHI---E-----KFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC---C-----EEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCc---C-----EEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 3578888877434443 22333334556 6 88888887752 23334566788888888854 33
Q ss_pred c-----ccccccCCCCCCEEeecCC
Q 046123 72 S-----LPSTINGLRSLRTLYLSGC 91 (108)
Q Consensus 72 ~-----lp~~~~~l~~L~~l~l~~~ 91 (108)
. +-+++..-..|++|++++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2334444456888888753
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.48 E-value=0.27 Score=31.70 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=52.4
Q ss_pred CCCcEEeccCCcCCCcCC-----cccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCc--C
Q 046123 2 KSLKTLVLSGCLKLKKFP-----DIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCK--N 69 (108)
Q Consensus 2 ~~L~~L~l~~~~~~~~~p-----~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~--~ 69 (108)
++|+.|++++| .+++.. ..+..-..| + .|++++|.|.. +.+.+..-+.|+.|++++|. .
T Consensus 70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL---~-----~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ 140 (197)
T 1pgv_A 70 KHIEKFSLANT-AISDSEARGLIELIETSPSL---R-----VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV 140 (197)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC---C-----EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred CCcCEEEccCC-CCChHHHHHHHHHHhcCCcc---C-----eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC
Confidence 46899999995 555431 222233556 7 99999998862 33445666789999998642 2
Q ss_pred Cc-----cccccccCCCCCCEEeecCC
Q 046123 70 LK-----SLPSTINGLRSLRTLYLSGC 91 (108)
Q Consensus 70 ~~-----~lp~~~~~l~~L~~l~l~~~ 91 (108)
++ .+-+.+..=++|+.++++.+
T Consensus 141 ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 141 LGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33 13334444567899998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.98 E-value=3.3 Score=23.44 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=25.4
Q ss_pred CCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccC
Q 046123 14 KLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKD 66 (108)
Q Consensus 14 ~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~ 66 (108)
.++.+. ..+..+..| + .+.+..+ +..+-. .|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L---~-----~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVI---R-----EITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTC---C-----CEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCC---c-----EEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455554 455566666 6 6666543 333432 366777777776655
Done!