BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046124
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
          Length = 656

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 535


>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
           Evolution
          Length = 639

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 482 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 518


>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
           Azide
 pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
           Pastoris.
 pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
 pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
          Length = 639

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 482 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 518


>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
          Length = 639

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 482 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 518


>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
          Length = 639

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 482 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 518


>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
          Length = 639

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 34  TFYIYQPENTVRICRNILQISIDGAIFNR----CLDC 66
           TFY   P + VR+  +I  +  DG +FN     C DC
Sbjct: 482 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 518


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,696,246
Number of Sequences: 62578
Number of extensions: 185599
Number of successful extensions: 421
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 8
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)