Query 046124
Match_columns 238
No_of_seqs 194 out of 1612
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 3.3E-21 7.1E-26 187.7 18.0 179 60-238 9-233 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.4 8.3E-13 1.8E-17 113.7 7.2 69 168-237 1-71 (287)
3 COG0488 Uup ATPase components 99.1 6.6E-11 1.4E-15 110.1 5.0 155 45-213 198-377 (530)
4 KOG0927 Predicted transporter 99.1 2.5E-10 5.4E-15 104.1 8.0 147 52-214 279-446 (614)
5 PLN03210 Resistant to P. syrin 98.8 6.9E-09 1.5E-13 105.4 6.2 57 163-222 184-242 (1153)
6 cd01128 rho_factor Transcripti 98.8 1.5E-08 3.3E-13 86.1 7.0 50 185-236 17-68 (249)
7 PRK09376 rho transcription ter 98.7 2.6E-08 5.7E-13 89.0 5.6 61 175-237 159-222 (416)
8 KOG0066 eIF2-interacting prote 98.6 2.4E-07 5.3E-12 83.3 10.5 151 53-208 470-637 (807)
9 PRK10636 putative ABC transpor 98.6 2.2E-08 4.7E-13 95.9 1.6 47 166-214 322-368 (638)
10 TIGR00767 rho transcription te 98.4 8.7E-07 1.9E-11 79.6 6.7 51 185-237 169-221 (415)
11 PRK11147 ABC transporter ATPas 98.3 1.2E-07 2.7E-12 90.8 0.7 47 166-214 329-375 (635)
12 PRK11331 5-methylcytosine-spec 98.3 3.5E-06 7.6E-11 76.8 9.3 69 163-234 175-243 (459)
13 PF13191 AAA_16: AAA ATPase do 98.1 1.4E-06 3.1E-11 69.7 3.1 44 165-208 2-48 (185)
14 PF05496 RuvB_N: Holliday junc 98.1 3.6E-06 7.9E-11 70.0 4.6 46 163-208 24-74 (233)
15 TIGR02903 spore_lon_C ATP-depe 98.1 6.6E-05 1.4E-09 71.8 13.5 46 163-208 154-199 (615)
16 cd00009 AAA The AAA+ (ATPases 98.1 1.2E-05 2.7E-10 60.8 7.1 59 167-228 2-60 (151)
17 COG1120 FepC ABC-type cobalami 98.0 1.2E-06 2.6E-11 74.5 0.5 41 166-208 12-52 (258)
18 PRK00411 cdc6 cell division co 98.0 1.7E-05 3.7E-10 71.5 7.9 73 163-236 30-106 (394)
19 PF01637 Arch_ATPase: Archaeal 97.9 7.7E-06 1.7E-10 67.5 3.9 44 165-208 1-44 (234)
20 PTZ00202 tuzin; Provisional 97.9 0.00019 4.1E-09 65.4 12.7 67 162-237 261-330 (550)
21 TIGR02928 orc1/cdc6 family rep 97.9 2.8E-05 6.1E-10 69.3 7.4 75 163-237 15-96 (365)
22 TIGR03015 pepcterm_ATPase puta 97.9 5.9E-05 1.3E-09 64.3 8.9 51 183-237 42-92 (269)
23 PF13207 AAA_17: AAA domain; P 97.8 2.2E-05 4.7E-10 58.7 3.4 23 186-208 1-23 (121)
24 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 7E-06 1.5E-10 69.6 0.4 42 170-213 18-59 (254)
25 COG4559 ABC-type hemin transpo 97.7 1.6E-05 3.5E-10 65.4 1.8 36 172-209 17-52 (259)
26 TIGR01166 cbiO cobalt transpor 97.7 1.1E-05 2.4E-10 65.5 0.8 29 178-208 14-42 (190)
27 PRK13342 recombination factor 97.7 4.9E-05 1.1E-09 69.3 4.8 46 163-208 12-60 (413)
28 cd03225 ABC_cobalt_CbiO_domain 97.7 9.7E-06 2.1E-10 66.8 0.2 33 179-213 24-56 (211)
29 COG0466 Lon ATP-dependent Lon 97.7 0.00061 1.3E-08 64.9 12.0 47 162-208 322-374 (782)
30 COG1116 TauB ABC-type nitrate/ 97.7 1.1E-05 2.4E-10 67.8 0.3 41 166-208 13-53 (248)
31 TIGR00635 ruvB Holliday juncti 97.7 5.2E-05 1.1E-09 66.0 4.6 46 163-208 4-54 (305)
32 cd03265 ABC_DrrA DrrA is the A 97.7 2E-05 4.4E-10 65.4 1.8 34 173-208 17-50 (220)
33 PLN03073 ABC transporter F fam 97.7 7E-05 1.5E-09 72.8 5.7 42 171-214 524-565 (718)
34 PRK13543 cytochrome c biogenes 97.7 9.8E-06 2.1E-10 67.2 -0.1 41 171-213 26-66 (214)
35 PF00005 ABC_tran: ABC transpo 97.6 3.9E-05 8.5E-10 58.6 3.2 23 186-208 13-35 (137)
36 cd03235 ABC_Metallic_Cations A 97.6 1.4E-05 3E-10 66.0 0.7 40 172-213 15-54 (213)
37 smart00763 AAA_PrkA PrkA AAA d 97.6 7.8E-05 1.7E-09 66.3 5.4 57 164-220 52-118 (361)
38 cd03259 ABC_Carb_Solutes_like 97.6 1.5E-05 3.3E-10 65.8 0.7 35 172-208 16-50 (213)
39 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 4E-05 8.8E-10 63.4 3.3 33 174-208 22-54 (218)
40 cd03226 ABC_cobalt_CbiO_domain 97.6 1.4E-05 3E-10 65.7 0.4 35 177-213 21-55 (205)
41 TIGR02315 ABC_phnC phosphonate 97.6 1.9E-05 4.1E-10 66.6 1.2 35 172-208 18-52 (243)
42 cd03263 ABC_subfamily_A The AB 97.6 1.5E-05 3.3E-10 66.1 0.6 40 172-213 18-57 (220)
43 PF13401 AAA_22: AAA domain; P 97.6 3.8E-05 8.2E-10 58.0 2.7 53 184-237 4-59 (131)
44 PRK11819 putative ABC transpor 97.6 9.7E-05 2.1E-09 69.9 6.1 46 166-213 334-379 (556)
45 COG2256 MGS1 ATPase related to 97.6 8E-05 1.7E-09 66.5 5.1 46 163-208 24-72 (436)
46 PRK14242 phosphate transporter 97.6 1.2E-05 2.6E-10 68.3 -0.2 35 171-207 21-55 (253)
47 PRK10247 putative ABC transpor 97.6 1.7E-05 3.6E-10 66.3 0.7 41 171-213 22-62 (225)
48 COG0488 Uup ATPase components 97.6 2.8E-05 6.1E-10 72.8 2.2 63 166-230 13-78 (530)
49 PRK15177 Vi polysaccharide exp 97.6 5E-05 1.1E-09 63.0 3.5 29 186-214 15-43 (213)
50 cd03257 ABC_NikE_OppD_transpor 97.6 1.8E-05 3.8E-10 66.0 0.7 40 172-213 21-60 (228)
51 cd03218 ABC_YhbG The ABC trans 97.6 1.8E-05 4E-10 66.2 0.8 35 172-208 16-50 (232)
52 KOG2028 ATPase related to the 97.6 9.9E-05 2.2E-09 65.4 5.3 66 164-234 139-211 (554)
53 TIGR00960 3a0501s02 Type II (G 97.6 4.8E-05 1E-09 62.9 3.2 28 179-208 26-53 (216)
54 cd03301 ABC_MalK_N The N-termi 97.6 1.7E-05 3.6E-10 65.5 0.4 35 172-208 16-50 (213)
55 TIGR03608 L_ocin_972_ABC putat 97.6 1.4E-05 3.1E-10 65.5 -0.0 28 179-208 21-48 (206)
56 cd03222 ABC_RNaseL_inhibitor T 97.6 5.2E-05 1.1E-09 61.2 3.2 33 179-213 22-54 (177)
57 cd03269 ABC_putative_ATPase Th 97.6 8.4E-05 1.8E-09 61.2 4.5 28 179-208 23-50 (210)
58 COG1134 TagH ABC-type polysacc 97.6 2.4E-05 5.1E-10 65.6 1.2 45 171-217 42-86 (249)
59 cd03261 ABC_Org_Solvent_Resist 97.6 5.2E-05 1.1E-09 63.6 3.3 29 178-208 22-50 (235)
60 cd03229 ABC_Class3 This class 97.6 4.9E-05 1.1E-09 61.1 3.0 29 178-208 22-50 (178)
61 TIGR01188 drrA daunorubicin re 97.6 1.6E-05 3.5E-10 69.4 0.2 34 178-213 15-48 (302)
62 cd03296 ABC_CysA_sulfate_impor 97.6 1.6E-05 3.4E-10 67.0 -0.0 33 174-208 20-52 (239)
63 PRK11247 ssuB aliphatic sulfon 97.6 1.6E-05 3.5E-10 67.9 0.1 41 171-213 27-67 (257)
64 cd03267 ABC_NatA_like Similar 97.6 1.6E-05 3.4E-10 67.0 -0.0 35 172-208 37-71 (236)
65 cd03256 ABC_PhnC_transporter A 97.6 1.7E-05 3.7E-10 66.7 0.2 34 178-213 23-56 (241)
66 cd03219 ABC_Mj1267_LivG_branch 97.6 1.8E-05 3.9E-10 66.4 0.3 33 174-208 18-50 (236)
67 PRK13538 cytochrome c biogenes 97.6 1.7E-05 3.7E-10 65.2 0.1 35 177-213 22-56 (204)
68 TIGR02673 FtsE cell division A 97.6 6E-05 1.3E-09 62.2 3.4 35 172-208 18-52 (214)
69 PRK11248 tauB taurine transpor 97.6 1.9E-05 4.1E-10 67.4 0.3 34 178-213 23-56 (255)
70 TIGR03410 urea_trans_UrtE urea 97.6 2E-05 4.4E-10 65.9 0.4 40 172-213 16-55 (230)
71 cd03224 ABC_TM1139_LivF_branch 97.6 1.7E-05 3.6E-10 65.9 -0.0 28 179-208 23-50 (222)
72 cd03262 ABC_HisP_GlnQ_permease 97.6 2E-05 4.3E-10 65.0 0.4 28 179-208 23-50 (213)
73 COG1126 GlnQ ABC-type polar am 97.6 2.2E-05 4.7E-10 64.8 0.6 43 164-208 10-52 (240)
74 TIGR02211 LolD_lipo_ex lipopro 97.6 5.9E-05 1.3E-09 62.6 3.1 28 179-208 28-55 (221)
75 cd03237 ABC_RNaseL_inhibitor_d 97.5 7.1E-05 1.5E-09 63.5 3.6 29 186-214 27-55 (246)
76 PRK13541 cytochrome c biogenes 97.5 6.8E-05 1.5E-09 61.2 3.3 31 181-213 25-55 (195)
77 cd03260 ABC_PstB_phosphate_tra 97.5 1.8E-05 4E-10 66.0 -0.1 28 179-208 23-50 (227)
78 PRK10584 putative ABC transpor 97.5 6.3E-05 1.4E-09 62.8 3.1 33 174-208 28-60 (228)
79 TIGR01978 sufC FeS assembly AT 97.5 2.1E-05 4.6E-10 66.1 0.3 34 172-207 16-49 (243)
80 cd03238 ABC_UvrA The excision 97.5 6.4E-05 1.4E-09 60.6 3.0 26 179-206 18-43 (176)
81 COG0410 LivF ABC-type branched 97.5 1.9E-05 4.1E-10 65.6 -0.1 41 166-208 13-53 (237)
82 PRK13638 cbiO cobalt transport 97.5 2.4E-05 5.1E-10 67.2 0.5 40 172-213 17-56 (271)
83 PRK10636 putative ABC transpor 97.5 2.3E-05 4.9E-10 75.3 0.3 47 166-214 11-57 (638)
84 TIGR01189 ccmA heme ABC export 97.5 1.8E-05 3.9E-10 64.7 -0.4 33 179-213 23-55 (198)
85 PRK11264 putative amino-acid A 97.5 2.4E-05 5.3E-10 66.2 0.5 35 172-208 19-53 (250)
86 PRK11124 artP arginine transpo 97.5 2.5E-05 5.5E-10 65.8 0.5 33 174-208 20-52 (242)
87 cd03293 ABC_NrtD_SsuB_transpor 97.5 6.7E-05 1.5E-09 62.3 3.0 34 178-213 26-59 (220)
88 TIGR00235 udk uridine kinase. 97.5 7.5E-05 1.6E-09 61.6 3.2 25 184-208 6-30 (207)
89 cd03266 ABC_NatA_sodium_export 97.5 3.9E-05 8.5E-10 63.5 1.5 29 178-208 27-55 (218)
90 TIGR03719 ABC_ABC_ChvD ATP-bin 97.5 0.00024 5.1E-09 67.2 6.9 46 166-213 332-377 (552)
91 PRK13540 cytochrome c biogenes 97.5 7.5E-05 1.6E-09 61.1 3.1 32 175-208 20-51 (200)
92 cd03294 ABC_Pro_Gly_Bertaine T 97.5 2.5E-05 5.4E-10 67.1 0.2 33 174-208 42-74 (269)
93 cd03292 ABC_FtsE_transporter F 97.5 7.5E-05 1.6E-09 61.6 3.1 28 179-208 24-51 (214)
94 PRK05480 uridine/cytidine kina 97.5 8.6E-05 1.9E-09 61.2 3.4 26 183-208 5-30 (209)
95 PRK14250 phosphate ABC transpo 97.5 2.5E-05 5.5E-10 65.9 0.2 34 178-213 25-58 (241)
96 cd03258 ABC_MetN_methionine_tr 97.5 9E-05 2E-09 62.0 3.5 38 174-213 23-60 (233)
97 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 8.2E-05 1.8E-09 62.5 3.2 28 179-208 24-51 (236)
98 TIGR01184 ntrCD nitrate transp 97.5 8.3E-05 1.8E-09 62.3 3.2 28 186-213 13-40 (230)
99 cd03231 ABC_CcmA_heme_exporter 97.5 3.2E-05 6.9E-10 63.5 0.6 32 175-208 19-50 (201)
100 cd03230 ABC_DR_subfamily_A Thi 97.5 8.3E-05 1.8E-09 59.5 3.0 28 179-208 23-50 (173)
101 TIGR01288 nodI ATP-binding ABC 97.5 2.8E-05 6.1E-10 68.0 0.3 36 171-208 19-54 (303)
102 PRK14247 phosphate ABC transpo 97.5 3.4E-05 7.3E-10 65.4 0.6 35 172-208 19-53 (250)
103 PRK06696 uridine kinase; Valid 97.5 0.0002 4.3E-09 59.8 5.2 41 168-208 3-46 (223)
104 cd03268 ABC_BcrA_bacitracin_re 97.5 8.5E-05 1.8E-09 61.1 2.9 28 179-208 23-50 (208)
105 TIGR00972 3a0107s01c2 phosphat 97.5 3.4E-05 7.3E-10 65.3 0.5 35 172-208 17-51 (247)
106 PRK14248 phosphate ABC transpo 97.5 2.2E-05 4.7E-10 67.3 -0.7 35 171-207 36-70 (268)
107 PRK13548 hmuV hemin importer A 97.5 3.2E-05 7E-10 66.0 0.4 40 172-213 18-57 (258)
108 PRK14267 phosphate ABC transpo 97.4 3.4E-05 7.4E-10 65.5 0.5 36 171-208 19-54 (253)
109 PRK11629 lolD lipoprotein tran 97.4 0.0001 2.2E-09 61.8 3.3 28 179-208 32-59 (233)
110 PRK12727 flagellar biosynthesi 97.4 0.002 4.3E-08 60.3 12.0 25 184-208 350-374 (559)
111 cd03236 ABC_RNaseL_inhibitor_d 97.4 7.1E-05 1.5E-09 63.9 2.4 41 171-214 16-56 (255)
112 PRK14241 phosphate transporter 97.4 2.9E-05 6.3E-10 66.1 -0.0 35 172-208 20-54 (258)
113 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00011 2.3E-09 58.6 3.2 34 179-214 24-57 (166)
114 PRK09270 nucleoside triphospha 97.4 0.00021 4.6E-09 59.9 5.2 27 182-208 31-57 (229)
115 TIGR00763 lon ATP-dependent pr 97.4 0.0014 3E-08 64.5 11.6 46 163-208 320-371 (775)
116 COG2255 RuvB Holliday junction 97.4 0.0002 4.4E-09 61.4 5.0 46 163-208 26-76 (332)
117 TIGR03873 F420-0_ABC_ATP propo 97.4 2.6E-05 5.7E-10 66.3 -0.4 40 172-213 17-56 (256)
118 PRK14273 phosphate ABC transpo 97.4 4.3E-05 9.2E-10 64.9 0.9 36 171-208 22-57 (254)
119 PRK13537 nodulation ABC transp 97.4 3.5E-05 7.6E-10 67.5 0.4 46 166-213 17-62 (306)
120 cd03264 ABC_drug_resistance_li 97.4 9E-05 1.9E-09 61.1 2.8 23 186-208 27-49 (211)
121 COG1131 CcmA ABC-type multidru 97.4 2.8E-05 6.2E-10 67.7 -0.2 45 164-210 12-57 (293)
122 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00011 2.4E-09 61.9 3.4 28 179-208 24-51 (242)
123 cd03216 ABC_Carb_Monos_I This 97.4 0.0001 2.2E-09 58.5 3.0 28 179-208 23-50 (163)
124 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00011 2.4E-09 60.5 3.3 34 178-213 20-53 (211)
125 PRK10575 iron-hydroxamate tran 97.4 3.1E-05 6.7E-10 66.3 -0.0 36 171-208 26-61 (265)
126 PRK00080 ruvB Holliday junctio 97.4 0.00015 3.3E-09 64.0 4.4 46 163-208 25-75 (328)
127 PRK09493 glnQ glutamine ABC tr 97.4 5.7E-05 1.2E-09 63.6 1.5 29 178-208 23-51 (240)
128 PLN03025 replication factor C 97.4 0.00049 1.1E-08 60.6 7.5 46 163-208 13-58 (319)
129 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 4.3E-05 9.4E-10 63.8 0.8 36 171-208 37-72 (224)
130 PRK10908 cell division protein 97.4 0.00012 2.5E-09 60.9 3.3 28 179-208 25-52 (222)
131 PRK09544 znuC high-affinity zi 97.4 9.7E-05 2.1E-09 62.9 2.9 32 180-213 28-59 (251)
132 PRK13539 cytochrome c biogenes 97.4 0.00012 2.6E-09 60.3 3.4 29 178-208 24-52 (207)
133 TIGR02324 CP_lyasePhnL phospho 97.4 0.00013 2.7E-09 60.8 3.5 34 173-208 25-58 (224)
134 cd03246 ABCC_Protease_Secretio 97.4 0.00013 2.7E-09 58.4 3.4 27 180-208 26-52 (173)
135 PRK10744 pstB phosphate transp 97.4 3.7E-05 8E-10 65.6 0.2 35 172-208 29-63 (260)
136 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00011 2.5E-09 61.4 3.2 33 179-213 25-57 (234)
137 cd03228 ABCC_MRP_Like The MRP 97.4 0.00012 2.7E-09 58.4 3.3 33 179-213 25-57 (171)
138 cd03247 ABCC_cytochrome_bd The 97.4 0.00012 2.7E-09 58.7 3.2 32 180-213 26-57 (178)
139 COG4107 PhnK ABC-type phosphon 97.4 8.2E-05 1.8E-09 59.7 2.1 50 162-213 12-61 (258)
140 PRK11701 phnK phosphonate C-P 97.4 0.00012 2.5E-09 62.5 3.2 38 174-213 24-61 (258)
141 PRK10787 DNA-binding ATP-depen 97.4 0.002 4.4E-08 63.3 12.1 47 162-208 321-373 (784)
142 TIGR01277 thiQ thiamine ABC tr 97.4 0.00011 2.5E-09 60.6 3.1 32 180-213 22-53 (213)
143 cd03215 ABC_Carb_Monos_II This 97.4 0.00012 2.6E-09 59.1 3.1 28 179-208 23-50 (182)
144 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00011 2.4E-09 60.7 2.9 24 185-208 24-47 (214)
145 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00012 2.5E-09 57.0 2.8 32 180-213 24-55 (144)
146 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.00013 2.8E-09 61.3 3.3 33 179-213 26-58 (238)
147 PRK11300 livG leucine/isoleuci 97.4 3.6E-05 7.7E-10 65.4 -0.1 39 173-213 22-60 (255)
148 PRK14265 phosphate ABC transpo 97.4 2.4E-05 5.2E-10 67.4 -1.2 36 171-208 35-70 (274)
149 PRK14239 phosphate transporter 97.4 4.1E-05 8.9E-10 64.9 0.2 33 173-207 22-54 (252)
150 PRK15112 antimicrobial peptide 97.4 5.4E-05 1.2E-09 64.9 1.0 40 172-213 29-68 (267)
151 TIGR02770 nickel_nikD nickel i 97.4 0.00012 2.6E-09 61.3 3.0 23 186-208 14-36 (230)
152 PRK11831 putative ABC transpor 97.4 0.00013 2.8E-09 62.7 3.3 28 179-208 30-57 (269)
153 COG3842 PotA ABC-type spermidi 97.4 4.3E-05 9.2E-10 67.9 0.3 48 164-213 13-60 (352)
154 PRK00440 rfc replication facto 97.4 0.0007 1.5E-08 59.0 8.0 46 163-208 17-62 (319)
155 PRK10895 lipopolysaccharide AB 97.4 0.00014 3E-09 61.3 3.3 34 173-208 20-53 (241)
156 PRK10253 iron-enterobactin tra 97.4 4.9E-05 1.1E-09 65.1 0.6 36 171-208 22-57 (265)
157 PRK13649 cbiO cobalt transport 97.4 0.00011 2.4E-09 63.3 2.8 28 179-208 30-57 (280)
158 PRK11147 ABC transporter ATPas 97.4 3.8E-05 8.2E-10 73.8 -0.1 41 171-213 18-58 (635)
159 PRK13536 nodulation factor exp 97.4 3.6E-05 7.8E-10 68.5 -0.3 46 166-213 51-96 (340)
160 PRK13547 hmuV hemin importer A 97.4 4.1E-05 8.8E-10 66.0 0.0 35 172-208 17-51 (272)
161 PRK14262 phosphate ABC transpo 97.4 4.4E-05 9.5E-10 64.7 0.2 35 172-208 19-53 (250)
162 PRK11614 livF leucine/isoleuci 97.4 4.1E-05 8.8E-10 64.3 0.0 35 172-208 21-55 (237)
163 PRK14259 phosphate ABC transpo 97.4 2.6E-05 5.6E-10 67.0 -1.2 35 172-208 29-63 (269)
164 PRK09580 sufC cysteine desulfu 97.4 4.7E-05 1E-09 64.3 0.4 31 175-207 20-50 (248)
165 PRK11231 fecE iron-dicitrate t 97.4 4.3E-05 9.4E-10 65.0 0.2 33 174-208 20-52 (255)
166 COG1119 ModF ABC-type molybden 97.4 6.8E-05 1.5E-09 63.0 1.3 44 165-210 40-83 (257)
167 TIGR02323 CP_lyasePhnK phospho 97.4 6.2E-05 1.3E-09 63.8 1.1 34 173-208 20-53 (253)
168 PRK14243 phosphate transporter 97.4 5E-05 1.1E-09 65.0 0.5 36 171-208 25-60 (264)
169 PRK14256 phosphate ABC transpo 97.4 4.3E-05 9.2E-10 64.9 0.0 29 178-208 26-54 (252)
170 COG1118 CysA ABC-type sulfate/ 97.4 8.2E-05 1.8E-09 64.4 1.7 50 174-225 20-71 (345)
171 COG1124 DppF ABC-type dipeptid 97.4 0.00012 2.6E-09 61.4 2.6 36 171-208 22-57 (252)
172 PRK14238 phosphate transporter 97.4 3.1E-05 6.8E-10 66.5 -0.8 34 173-208 41-74 (271)
173 PRK14240 phosphate transporter 97.4 5.4E-05 1.2E-09 64.1 0.6 33 174-208 21-53 (250)
174 cd03214 ABC_Iron-Siderophores_ 97.4 0.00017 3.7E-09 58.0 3.5 28 179-208 22-49 (180)
175 PRK13645 cbiO cobalt transport 97.4 0.00015 3.3E-09 62.9 3.4 34 178-213 33-66 (289)
176 PRK15056 manganese/iron transp 97.4 0.00014 3E-09 62.5 3.1 33 179-213 30-62 (272)
177 PRK10771 thiQ thiamine transpo 97.4 0.00014 3.1E-09 60.8 3.1 33 179-213 22-54 (232)
178 TIGR03005 ectoine_ehuA ectoine 97.4 0.00014 3.1E-09 61.6 3.2 28 179-208 23-50 (252)
179 cd03252 ABCC_Hemolysin The ABC 97.4 0.00016 3.5E-09 60.6 3.4 28 179-208 25-52 (237)
180 cd03245 ABCC_bacteriocin_expor 97.4 0.00017 3.7E-09 59.8 3.5 34 178-213 26-59 (220)
181 PRK13641 cbiO cobalt transport 97.3 0.00014 3E-09 63.1 3.0 38 174-213 25-62 (287)
182 PRK13650 cbiO cobalt transport 97.3 0.00014 3.1E-09 62.7 3.1 33 179-213 30-62 (279)
183 cd03232 ABC_PDR_domain2 The pl 97.3 0.00014 3.1E-09 59.2 2.9 27 179-207 30-56 (192)
184 PRK10938 putative molybdenum t 97.3 7.3E-05 1.6E-09 69.6 1.3 36 171-208 18-53 (490)
185 PRK15064 ABC transporter ATP-b 97.3 4.6E-05 9.9E-10 71.6 -0.1 40 173-214 18-57 (530)
186 cd03254 ABCC_Glucan_exporter_l 97.3 0.00017 3.8E-09 60.1 3.4 39 173-213 20-58 (229)
187 PRK13546 teichoic acids export 97.3 0.00016 3.5E-09 62.0 3.3 33 179-213 47-79 (264)
188 cd03253 ABCC_ATM1_transporter 97.3 0.00018 3.9E-09 60.3 3.6 33 179-213 24-56 (236)
189 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00037 8E-09 57.8 5.4 41 168-208 22-62 (226)
190 TIGR03411 urea_trans_UrtD urea 97.3 0.00016 3.5E-09 60.9 3.2 29 178-208 24-52 (242)
191 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00019 4.1E-09 59.5 3.6 28 179-208 24-51 (218)
192 TIGR00554 panK_bact pantothena 97.3 0.00026 5.6E-09 61.6 4.5 27 182-208 60-86 (290)
193 cd03244 ABCC_MRP_domain2 Domai 97.3 0.00017 3.7E-09 59.8 3.2 40 172-213 20-59 (221)
194 PRK12402 replication factor C 97.3 0.0003 6.5E-09 61.9 5.0 46 163-208 15-60 (337)
195 PRK10619 histidine/lysine/argi 97.3 0.00015 3.3E-09 61.7 3.0 34 178-213 27-60 (257)
196 TIGR03740 galliderm_ABC gallid 97.3 0.00028 6.1E-09 58.7 4.6 33 179-213 23-55 (223)
197 TIGR03771 anch_rpt_ABC anchore 97.3 0.00017 3.7E-09 60.1 3.2 28 186-213 8-35 (223)
198 PRK13644 cbiO cobalt transport 97.3 0.00017 3.8E-09 62.1 3.4 34 178-213 24-57 (274)
199 PRK06547 hypothetical protein; 97.3 0.00033 7.2E-09 56.3 4.8 34 175-208 6-39 (172)
200 PRK13639 cbiO cobalt transport 97.3 0.00015 3.3E-09 62.4 3.0 33 179-213 25-57 (275)
201 PRK13637 cbiO cobalt transport 97.3 0.00017 3.6E-09 62.6 3.2 33 179-213 30-62 (287)
202 PRK14253 phosphate ABC transpo 97.3 6.2E-05 1.3E-09 63.7 0.5 35 172-208 19-53 (249)
203 PRK14251 phosphate ABC transpo 97.3 5.5E-05 1.2E-09 64.1 0.2 29 178-208 26-54 (251)
204 PRK14274 phosphate ABC transpo 97.3 0.00017 3.7E-09 61.5 3.2 28 179-208 35-62 (259)
205 cd03248 ABCC_TAP TAP, the Tran 97.3 0.00017 3.7E-09 60.0 3.2 40 172-213 30-69 (226)
206 PRK09984 phosphonate/organopho 97.3 5.3E-05 1.2E-09 64.7 0.1 35 172-208 20-54 (262)
207 cd03234 ABCG_White The White s 97.3 7E-05 1.5E-09 62.5 0.8 35 172-208 23-57 (226)
208 CHL00131 ycf16 sulfate ABC tra 97.3 5.5E-05 1.2E-09 64.1 0.1 34 172-207 23-56 (252)
209 PRK14245 phosphate ABC transpo 97.3 0.00017 3.7E-09 61.1 3.1 28 178-207 25-52 (250)
210 PRK13648 cbiO cobalt transport 97.3 0.00028 6.1E-09 60.5 4.5 29 178-208 31-59 (269)
211 PRK13647 cbiO cobalt transport 97.3 0.00016 3.5E-09 62.3 3.0 38 174-213 23-60 (274)
212 cd03233 ABC_PDR_domain1 The pl 97.3 0.00015 3.3E-09 59.5 2.7 28 179-208 30-57 (202)
213 PRK13640 cbiO cobalt transport 97.3 0.00016 3.6E-09 62.5 3.1 28 179-208 30-57 (282)
214 PRK11819 putative ABC transpor 97.3 5.6E-05 1.2E-09 71.5 0.1 42 171-214 22-63 (556)
215 PRK14272 phosphate ABC transpo 97.3 6E-05 1.3E-09 63.9 0.3 35 172-208 20-54 (252)
216 COG3839 MalK ABC-type sugar tr 97.3 0.00017 3.6E-09 63.8 3.0 35 172-208 19-53 (338)
217 TIGR03522 GldA_ABC_ATP gliding 97.3 0.00029 6.3E-09 61.5 4.4 33 179-213 25-57 (301)
218 PRK13635 cbiO cobalt transport 97.3 0.00019 4E-09 62.1 3.1 34 178-213 29-62 (279)
219 PRK14261 phosphate ABC transpo 97.3 5.8E-05 1.2E-09 64.1 -0.1 34 172-207 22-55 (253)
220 PRK15455 PrkA family serine pr 97.3 0.00031 6.8E-09 66.0 4.7 45 164-208 77-127 (644)
221 PRK13632 cbiO cobalt transport 97.3 0.0002 4.4E-09 61.5 3.3 34 173-208 26-59 (271)
222 PRK14255 phosphate ABC transpo 97.3 6.1E-05 1.3E-09 63.8 0.1 28 178-207 27-54 (252)
223 PRK14260 phosphate ABC transpo 97.3 5.8E-05 1.3E-09 64.4 -0.1 29 178-208 29-57 (259)
224 COG1117 PstB ABC-type phosphat 97.3 0.00015 3.2E-09 60.0 2.3 71 163-236 14-90 (253)
225 PRK13646 cbiO cobalt transport 97.3 0.00021 4.6E-09 61.9 3.5 34 178-213 29-62 (286)
226 PRK14237 phosphate transporter 97.3 0.0002 4.3E-09 61.4 3.2 35 172-208 36-70 (267)
227 PRK14235 phosphate transporter 97.3 0.0002 4.3E-09 61.4 3.2 29 178-208 41-69 (267)
228 PRK13652 cbiO cobalt transport 97.3 0.0002 4.3E-09 61.8 3.2 33 179-213 27-59 (277)
229 COG1245 Predicted ATPase, RNas 97.3 0.00045 9.8E-09 62.9 5.5 31 184-214 367-397 (591)
230 cd03217 ABC_FeS_Assembly ABC-t 97.3 7.1E-05 1.5E-09 61.4 0.4 34 172-207 16-49 (200)
231 cd01130 VirB11-like_ATPase Typ 97.3 0.00043 9.4E-09 56.1 5.0 35 172-208 15-49 (186)
232 TIGR02769 nickel_nikE nickel i 97.3 0.00021 4.5E-09 61.2 3.3 35 172-208 27-61 (265)
233 PRK14269 phosphate ABC transpo 97.3 5.6E-05 1.2E-09 63.9 -0.3 33 174-208 20-52 (246)
234 PRK14270 phosphate ABC transpo 97.3 7.1E-05 1.5E-09 63.5 0.3 29 178-208 26-54 (251)
235 COG4555 NatA ABC-type Na+ tran 97.3 0.00016 3.4E-09 59.3 2.3 41 171-213 17-57 (245)
236 COG4133 CcmA ABC-type transpor 97.3 9.9E-05 2.1E-09 59.7 1.1 41 171-213 17-57 (209)
237 smart00382 AAA ATPases associa 97.3 0.00022 4.7E-09 53.2 2.9 24 185-208 3-26 (148)
238 COG2274 SunT ABC-type bacterio 97.3 0.0029 6.2E-08 61.5 11.2 37 170-208 487-523 (709)
239 TIGR03269 met_CoM_red_A2 methy 97.3 7E-05 1.5E-09 70.2 0.2 35 172-208 16-50 (520)
240 PRK14271 phosphate ABC transpo 97.3 6.3E-05 1.4E-09 64.9 -0.1 41 166-208 31-71 (276)
241 PRK11153 metN DL-methionine tr 97.3 0.0002 4.4E-09 63.7 3.1 28 179-208 28-55 (343)
242 COG4618 ArpD ABC-type protease 97.3 0.0018 3.8E-08 59.7 9.1 37 170-208 350-386 (580)
243 PRK13651 cobalt transporter AT 97.3 0.00023 4.9E-09 62.4 3.3 38 174-213 25-62 (305)
244 PRK14258 phosphate ABC transpo 97.2 7.2E-05 1.6E-09 63.9 0.1 35 172-208 23-57 (261)
245 PRK10762 D-ribose transporter 97.2 7.1E-05 1.5E-09 69.9 0.1 40 172-213 20-59 (501)
246 PRK13409 putative ATPase RIL; 97.2 0.00024 5.2E-09 67.7 3.7 47 166-215 83-130 (590)
247 PRK13634 cbiO cobalt transport 97.2 0.00022 4.7E-09 62.0 3.1 33 179-213 30-62 (290)
248 cd03300 ABC_PotA_N PotA is an 97.2 9.7E-05 2.1E-09 61.9 0.9 40 172-213 16-55 (232)
249 PRK15064 ABC transporter ATP-b 97.2 8.2E-05 1.8E-09 69.9 0.5 46 166-213 329-374 (530)
250 COG1136 SalX ABC-type antimicr 97.2 0.00023 5.1E-09 59.4 3.1 29 178-208 27-55 (226)
251 cd03369 ABCC_NFT1 Domain 2 of 97.2 0.00027 5.9E-09 58.1 3.5 40 172-213 24-63 (207)
252 cd03250 ABCC_MRP_domain1 Domai 97.2 0.00025 5.4E-09 58.2 3.2 39 174-214 23-61 (204)
253 TIGR00968 3a0106s01 sulfate AB 97.2 0.00025 5.4E-09 59.7 3.3 28 179-208 23-50 (237)
254 PRK13643 cbiO cobalt transport 97.2 0.00025 5.5E-09 61.5 3.4 33 179-213 29-61 (288)
255 PRK14268 phosphate ABC transpo 97.2 6.8E-05 1.5E-09 63.9 -0.2 35 172-208 28-62 (258)
256 PRK10418 nikD nickel transport 97.2 0.00023 4.9E-09 60.5 3.0 28 179-208 26-53 (254)
257 PRK14275 phosphate ABC transpo 97.2 0.00024 5.1E-09 61.6 3.1 34 172-207 55-88 (286)
258 PRK14252 phosphate ABC transpo 97.2 4.7E-05 1E-09 65.2 -1.3 36 171-208 31-66 (265)
259 TIGR03719 ABC_ABC_ChvD ATP-bin 97.2 0.0001 2.2E-09 69.7 0.7 42 171-214 20-61 (552)
260 PRK13636 cbiO cobalt transport 97.2 0.00024 5.2E-09 61.5 3.0 40 172-213 22-61 (283)
261 PRK10419 nikE nickel transport 97.2 0.00025 5.3E-09 60.9 3.1 39 173-213 29-67 (268)
262 PRK14264 phosphate ABC transpo 97.2 5.8E-05 1.3E-09 66.0 -0.8 35 172-208 61-95 (305)
263 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00077 1.7E-08 51.8 5.5 34 173-208 13-46 (133)
264 PRK14244 phosphate ABC transpo 97.2 0.00026 5.7E-09 60.0 3.2 29 178-208 27-55 (251)
265 PRK15439 autoinducer 2 ABC tra 97.2 7.7E-05 1.7E-09 69.8 -0.2 35 172-208 27-61 (510)
266 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.00029 6.2E-09 61.1 3.4 33 179-213 60-92 (282)
267 TIGR02633 xylG D-xylose ABC tr 97.2 7.9E-05 1.7E-09 69.5 -0.1 35 172-208 17-51 (500)
268 PRK14263 phosphate ABC transpo 97.2 4.2E-05 9.2E-10 65.4 -1.8 41 166-208 18-58 (261)
269 PRK09700 D-allose transporter 97.2 8.1E-05 1.8E-09 69.6 -0.1 36 171-208 20-55 (510)
270 PLN03073 ABC transporter F fam 97.2 5.8E-05 1.2E-09 73.4 -1.1 40 166-207 187-226 (718)
271 PRK13549 xylose transporter AT 97.2 8.4E-05 1.8E-09 69.5 -0.0 36 171-208 20-55 (506)
272 PRK14246 phosphate ABC transpo 97.2 8.5E-05 1.8E-09 63.4 -0.0 41 166-208 20-60 (257)
273 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0003 6.4E-09 55.3 3.1 23 186-208 27-49 (157)
274 KOG0062 ATPase component of AB 97.2 0.0013 2.8E-08 60.6 7.5 163 31-208 222-414 (582)
275 TIGR02881 spore_V_K stage V sp 97.2 0.00073 1.6E-08 57.7 5.6 45 164-208 7-66 (261)
276 PRK03695 vitamin B12-transport 97.2 0.00026 5.6E-09 60.0 2.8 27 180-208 20-46 (248)
277 PF13671 AAA_33: AAA domain; P 97.2 0.00035 7.6E-09 53.6 3.3 23 186-208 1-23 (143)
278 PRK13631 cbiO cobalt transport 97.2 0.00031 6.8E-09 61.9 3.4 41 171-213 41-81 (320)
279 TIGR02314 ABC_MetN D-methionin 97.2 0.00029 6.3E-09 62.7 3.2 29 178-208 27-55 (343)
280 TIGR02142 modC_ABC molybdenum 97.2 0.00031 6.8E-09 62.8 3.4 27 180-208 21-47 (354)
281 PF13238 AAA_18: AAA domain; P 97.2 0.00034 7.4E-09 52.3 3.1 21 187-207 1-21 (129)
282 PRK14266 phosphate ABC transpo 97.2 0.00031 6.8E-09 59.4 3.2 28 179-208 26-53 (250)
283 PRK11144 modC molybdate transp 97.2 0.00031 6.8E-09 62.7 3.3 26 181-208 23-48 (352)
284 COG4619 ABC-type uncharacteriz 97.2 0.00015 3.2E-09 57.9 1.0 39 173-213 20-58 (223)
285 cd03299 ABC_ModC_like Archeal 97.1 0.00031 6.7E-09 59.0 3.0 33 179-213 22-54 (235)
286 PRK09700 D-allose transporter 97.1 0.00015 3.2E-09 67.9 1.2 28 179-208 286-313 (510)
287 PRK11000 maltose/maltodextrin 97.1 0.00033 7.2E-09 63.0 3.4 28 179-208 26-53 (369)
288 PRK06762 hypothetical protein; 97.1 0.00037 8.1E-09 55.1 3.3 24 184-207 2-25 (166)
289 cd03213 ABCG_EPDR ABCG transpo 97.1 0.00031 6.7E-09 57.3 2.9 35 172-208 25-59 (194)
290 PRK14249 phosphate ABC transpo 97.1 0.00011 2.5E-09 62.2 0.3 29 178-208 26-54 (251)
291 cd03278 ABC_SMC_barmotin Barmo 97.1 0.00031 6.7E-09 57.6 2.8 22 186-207 24-45 (197)
292 cd03274 ABC_SMC4_euk Eukaryoti 97.1 0.00031 6.7E-09 58.3 2.8 21 185-205 26-46 (212)
293 cd03272 ABC_SMC3_euk Eukaryoti 97.1 0.00029 6.3E-09 59.3 2.7 21 185-205 24-44 (243)
294 cd03283 ABC_MutS-like MutS-lik 97.1 0.00034 7.3E-09 57.5 3.0 24 185-208 26-49 (199)
295 PRK10982 galactose/methyl gala 97.1 0.0001 2.3E-09 68.6 -0.0 35 172-208 14-48 (491)
296 cd02019 NK Nucleoside/nucleoti 97.1 0.00036 7.9E-09 47.2 2.7 23 186-208 1-23 (69)
297 PRK11022 dppD dipeptide transp 97.1 0.00032 7E-09 62.0 3.0 35 172-208 23-57 (326)
298 PRK14236 phosphate transporter 97.1 0.00035 7.6E-09 60.0 3.2 36 171-208 40-75 (272)
299 PRK15093 antimicrobial peptide 97.1 0.00034 7.4E-09 61.9 3.1 35 172-208 23-57 (330)
300 PRK13549 xylose transporter AT 97.1 0.00015 3.2E-09 67.8 0.8 35 172-208 278-312 (506)
301 PF13173 AAA_14: AAA domain 97.1 0.00061 1.3E-08 51.7 4.1 38 185-226 3-40 (128)
302 PRK10982 galactose/methyl gala 97.1 0.00029 6.3E-09 65.6 2.7 28 179-208 271-298 (491)
303 PRK11288 araG L-arabinose tran 97.1 0.00023 5E-09 66.4 2.1 27 180-208 277-303 (501)
304 PRK11432 fbpC ferric transport 97.1 0.0001 2.3E-09 65.8 -0.2 37 175-213 25-61 (351)
305 PRK13633 cobalt transporter AT 97.1 0.0004 8.8E-09 59.9 3.4 28 179-208 33-60 (280)
306 PRK10938 putative molybdenum t 97.1 0.00011 2.5E-09 68.2 -0.0 35 172-208 276-310 (490)
307 PRK13642 cbiO cobalt transport 97.1 0.00041 8.8E-09 59.8 3.4 33 179-213 30-62 (277)
308 PRK10851 sulfate/thiosulfate t 97.1 0.00039 8.4E-09 62.2 3.3 33 179-213 25-57 (353)
309 TIGR02982 heterocyst_DevA ABC 97.1 0.00042 9.1E-09 57.5 3.3 32 175-208 24-55 (220)
310 PRK14254 phosphate ABC transpo 97.1 0.00037 8.1E-09 60.4 3.1 36 171-208 54-89 (285)
311 COG3638 ABC-type phosphate/pho 97.1 0.00011 2.3E-09 61.5 -0.3 40 167-208 15-54 (258)
312 PF08477 Miro: Miro-like prote 97.1 0.00046 1E-08 51.1 3.2 23 186-208 1-23 (119)
313 PRK04195 replication factor C 97.1 0.00045 9.7E-09 64.3 3.7 46 163-208 14-63 (482)
314 PF00004 AAA: ATPase family as 97.1 0.00043 9.3E-09 51.9 3.0 22 187-208 1-22 (132)
315 COG1125 OpuBA ABC-type proline 97.1 0.00015 3.3E-09 61.3 0.5 43 164-208 9-51 (309)
316 COG0396 sufC Cysteine desulfur 97.1 0.00025 5.4E-09 59.1 1.7 37 170-208 18-54 (251)
317 PRK11650 ugpC glycerol-3-phosp 97.1 0.00043 9.2E-09 62.0 3.3 28 179-208 27-54 (356)
318 PRK07667 uridine kinase; Provi 97.1 0.00082 1.8E-08 54.8 4.7 36 173-208 4-41 (193)
319 cd03273 ABC_SMC2_euk Eukaryoti 97.1 0.0004 8.7E-09 58.9 3.0 24 184-207 25-48 (251)
320 PRK11288 araG L-arabinose tran 97.1 0.00013 2.8E-09 68.1 -0.1 35 172-208 20-54 (501)
321 COG1127 Ttg2A ABC-type transpo 97.1 0.00016 3.5E-09 60.6 0.5 47 165-213 17-63 (263)
322 TIGR03265 PhnT2 putative 2-ami 97.1 0.0004 8.7E-09 62.1 3.1 27 180-208 28-54 (353)
323 PRK14963 DNA polymerase III su 97.1 0.00058 1.3E-08 63.8 4.2 46 163-208 14-60 (504)
324 cd03288 ABCC_SUR2 The SUR doma 97.1 0.00051 1.1E-08 58.5 3.5 33 179-213 44-76 (257)
325 PRK11308 dppF dipeptide transp 97.1 0.00042 9.2E-09 61.3 3.1 33 174-208 33-65 (327)
326 cd03279 ABC_sbcCD SbcCD and ot 97.1 0.00038 8.3E-09 57.6 2.7 21 185-205 29-49 (213)
327 TIGR02633 xylG D-xylose ABC tr 97.1 0.00019 4.1E-09 66.9 0.9 36 171-208 275-310 (500)
328 TIGR01186 proV glycine betaine 97.1 9.5E-05 2.1E-09 66.3 -1.1 29 179-209 16-44 (363)
329 PRK10070 glycine betaine trans 97.0 0.00045 9.7E-09 62.8 3.2 31 181-213 53-83 (400)
330 PRK15134 microcin C ABC transp 97.0 0.00017 3.8E-09 67.7 0.6 36 171-208 301-336 (529)
331 PRK15134 microcin C ABC transp 97.0 0.00041 8.9E-09 65.2 3.0 36 171-208 24-59 (529)
332 PRK09536 btuD corrinoid ABC tr 97.0 0.00011 2.3E-09 66.8 -0.9 29 178-208 25-53 (402)
333 PRK15439 autoinducer 2 ABC tra 97.0 0.00039 8.5E-09 65.1 2.8 26 181-208 288-313 (510)
334 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00054 1.2E-08 50.6 2.9 21 185-205 16-36 (107)
335 PRK14962 DNA polymerase III su 97.0 0.00084 1.8E-08 62.3 4.9 46 163-208 14-60 (472)
336 TIGR02030 BchI-ChlI magnesium 97.0 0.00096 2.1E-08 59.2 5.0 45 164-208 5-49 (337)
337 PRK15079 oligopeptide ABC tran 97.0 0.00048 1E-08 61.1 3.1 28 179-208 44-71 (331)
338 COG2884 FtsE Predicted ATPase 97.0 0.00039 8.4E-09 56.5 2.2 42 170-213 16-57 (223)
339 PHA02544 44 clamp loader, smal 97.0 0.00082 1.8E-08 58.8 4.5 46 163-208 21-67 (316)
340 PRK10463 hydrogenase nickel in 97.0 0.001 2.2E-08 57.7 5.0 32 177-208 97-128 (290)
341 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0027 5.8E-08 53.0 7.4 50 184-234 19-72 (235)
342 PRK10762 D-ribose transporter 97.0 0.00047 1E-08 64.4 3.1 27 180-208 276-302 (501)
343 PRK13409 putative ATPase RIL; 97.0 0.0005 1.1E-08 65.5 3.2 29 186-214 367-395 (590)
344 PRK13531 regulatory ATPase Rav 97.0 0.0012 2.6E-08 61.1 5.5 51 163-216 20-70 (498)
345 PRK13341 recombination factor 97.0 0.00079 1.7E-08 65.5 4.5 46 163-208 28-76 (725)
346 PRK05564 DNA polymerase III su 97.0 0.0029 6.3E-08 55.5 7.8 70 164-233 5-79 (313)
347 PHA00729 NTP-binding motif con 97.0 0.0012 2.5E-08 55.3 4.9 35 174-208 7-41 (226)
348 KOG2004 Mitochondrial ATP-depe 97.0 0.012 2.6E-07 56.5 12.0 47 162-208 410-462 (906)
349 cd03240 ABC_Rad50 The catalyti 97.0 0.00054 1.2E-08 56.5 2.9 20 186-205 24-43 (204)
350 PF07728 AAA_5: AAA domain (dy 97.0 0.0023 5E-08 48.9 6.2 41 187-233 2-42 (139)
351 TIGR03269 met_CoM_red_A2 methy 97.0 0.00051 1.1E-08 64.4 3.0 35 172-208 300-334 (520)
352 CHL00181 cbbX CbbX; Provisiona 97.0 0.0015 3.2E-08 56.8 5.6 23 186-208 61-83 (287)
353 PRK09473 oppD oligopeptide tra 97.0 0.00054 1.2E-08 60.7 2.9 35 172-208 32-66 (330)
354 cd02020 CMPK Cytidine monophos 97.0 0.00057 1.2E-08 52.5 2.7 23 186-208 1-23 (147)
355 COG4608 AppF ABC-type oligopep 97.0 0.00027 5.8E-09 60.3 0.9 34 173-208 30-63 (268)
356 PRK10751 molybdopterin-guanine 97.0 0.00069 1.5E-08 54.4 3.2 26 183-208 5-30 (173)
357 PF04665 Pox_A32: Poxvirus A32 96.9 0.0012 2.5E-08 55.8 4.6 36 185-223 14-49 (241)
358 PRK09183 transposase/IS protei 96.9 0.015 3.2E-07 49.8 11.5 23 186-208 104-126 (259)
359 PRK09452 potA putrescine/sperm 96.9 0.0006 1.3E-08 61.5 3.0 29 178-208 36-64 (375)
360 PRK05541 adenylylsulfate kinas 96.9 0.00073 1.6E-08 54.1 3.2 25 184-208 7-31 (176)
361 PRK10261 glutathione transport 96.9 0.00065 1.4E-08 65.2 3.4 36 171-208 31-66 (623)
362 CHL00095 clpC Clp protease ATP 96.9 0.001 2.2E-08 65.9 4.7 45 164-208 180-224 (821)
363 PRK12608 transcription termina 96.9 0.0028 6E-08 56.9 7.1 65 171-237 119-186 (380)
364 cd04155 Arl3 Arl3 subfamily. 96.9 0.00065 1.4E-08 53.6 2.8 25 183-207 13-37 (173)
365 cd03289 ABCC_CFTR2 The CFTR su 96.9 0.00069 1.5E-08 58.5 3.1 35 172-208 20-54 (275)
366 TIGR00073 hypB hydrogenase acc 96.9 0.00092 2E-08 55.1 3.7 32 177-208 15-46 (207)
367 TIGR02868 CydC thiol reductant 96.9 0.00035 7.5E-09 65.6 1.3 42 171-214 350-391 (529)
368 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.00072 1.6E-08 55.4 3.1 21 185-205 29-49 (200)
369 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0011 2.4E-08 65.7 4.9 46 163-208 187-232 (852)
370 TIGR03258 PhnT 2-aminoethylpho 96.9 0.00068 1.5E-08 60.8 3.1 28 179-208 28-55 (362)
371 PF10662 PduV-EutP: Ethanolami 96.9 0.00066 1.4E-08 52.8 2.6 24 185-208 2-25 (143)
372 PRK10261 glutathione transport 96.9 0.00068 1.5E-08 65.1 3.1 29 178-208 346-374 (623)
373 TIGR02639 ClpA ATP-dependent C 96.9 0.0012 2.6E-08 64.5 4.9 46 163-208 182-227 (731)
374 cd03243 ABC_MutS_homologs The 96.9 0.00073 1.6E-08 55.5 2.9 22 185-206 30-51 (202)
375 COG0572 Udk Uridine kinase [Nu 96.9 0.00091 2E-08 55.5 3.4 26 183-208 7-32 (218)
376 PRK11607 potG putrescine trans 96.9 0.00071 1.5E-08 61.0 3.0 28 179-208 42-69 (377)
377 PF03205 MobB: Molybdopterin g 96.9 0.00096 2.1E-08 51.8 3.4 39 185-225 1-39 (140)
378 TIGR01242 26Sp45 26S proteasom 96.9 0.0012 2.5E-08 59.3 4.4 45 164-208 123-180 (364)
379 PF03193 DUF258: Protein of un 96.9 0.0016 3.5E-08 51.6 4.7 35 171-208 25-59 (161)
380 PRK14961 DNA polymerase III su 96.9 0.0014 3.1E-08 58.8 4.9 46 163-208 16-62 (363)
381 PRK08084 DNA replication initi 96.9 0.0017 3.7E-08 54.7 5.0 46 163-208 23-69 (235)
382 COG4525 TauB ABC-type taurine 96.9 0.00068 1.5E-08 55.5 2.4 36 171-208 20-55 (259)
383 PRK05057 aroK shikimate kinase 96.9 0.00089 1.9E-08 53.7 3.1 23 185-207 5-27 (172)
384 COG0411 LivG ABC-type branched 96.9 7.7E-05 1.7E-09 62.5 -3.2 44 166-211 14-57 (250)
385 cd00071 GMPK Guanosine monopho 96.8 0.00087 1.9E-08 51.7 2.8 23 186-208 1-23 (137)
386 PF01926 MMR_HSR1: 50S ribosom 96.8 0.0011 2.4E-08 49.1 3.2 22 186-207 1-22 (116)
387 PF13555 AAA_29: P-loop contai 96.8 0.0012 2.5E-08 43.9 2.9 21 186-206 25-45 (62)
388 cd04159 Arl10_like Arl10-like 96.8 0.0008 1.7E-08 51.6 2.5 21 187-207 2-22 (159)
389 PRK03992 proteasome-activating 96.8 0.0013 2.7E-08 59.7 4.1 45 164-208 132-189 (389)
390 PRK14956 DNA polymerase III su 96.8 0.0014 3E-08 60.7 4.4 46 163-208 18-64 (484)
391 COG4987 CydC ABC-type transpor 96.8 0.00094 2E-08 61.8 3.3 37 170-208 352-388 (573)
392 COG4167 SapF ABC-type antimicr 96.8 0.00049 1.1E-08 55.7 1.3 37 174-212 31-67 (267)
393 cd03275 ABC_SMC1_euk Eukaryoti 96.8 0.00087 1.9E-08 56.8 2.9 24 185-208 23-46 (247)
394 PRK13545 tagH teichoic acids e 96.8 0.00095 2.1E-08 62.4 3.3 34 178-213 46-79 (549)
395 PRK14257 phosphate ABC transpo 96.8 0.00092 2E-08 59.2 3.1 35 172-208 98-132 (329)
396 PF02367 UPF0079: Uncharacteri 96.8 0.0024 5.3E-08 48.4 4.9 34 173-208 6-39 (123)
397 PRK08727 hypothetical protein; 96.8 0.0021 4.5E-08 54.1 5.0 59 163-224 20-78 (233)
398 PRK03846 adenylylsulfate kinas 96.8 0.0011 2.5E-08 54.1 3.3 27 182-208 22-48 (198)
399 PLN02796 D-glycerate 3-kinase 96.8 0.00098 2.1E-08 59.1 3.0 26 183-208 99-124 (347)
400 cd00464 SK Shikimate kinase (S 96.8 0.001 2.3E-08 51.5 2.9 22 187-208 2-23 (154)
401 PRK12323 DNA polymerase III su 96.8 0.0043 9.4E-08 59.3 7.4 46 163-208 16-62 (700)
402 PRK10865 protein disaggregatio 96.8 0.0017 3.7E-08 64.5 4.9 46 163-208 178-223 (857)
403 PRK14721 flhF flagellar biosyn 96.8 0.0017 3.6E-08 59.3 4.4 25 184-208 191-215 (420)
404 PRK14957 DNA polymerase III su 96.8 0.005 1.1E-07 58.1 7.7 46 163-208 16-62 (546)
405 PRK12726 flagellar biosynthesi 96.7 0.087 1.9E-06 47.6 15.1 26 183-208 205-230 (407)
406 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0011 2.4E-08 59.9 3.0 23 186-208 52-74 (382)
407 cd03270 ABC_UvrA_I The excisio 96.7 0.00055 1.2E-08 57.3 1.0 25 175-201 14-38 (226)
408 PRK11176 lipid transporter ATP 96.7 0.0013 2.7E-08 62.5 3.5 38 171-210 358-395 (582)
409 PLN02165 adenylate isopentenyl 96.7 0.0015 3.2E-08 57.7 3.6 29 180-208 39-67 (334)
410 TIGR00390 hslU ATP-dependent p 96.7 0.0027 5.9E-08 57.7 5.4 46 163-208 12-71 (441)
411 TIGR00176 mobB molybdopterin-g 96.7 0.0011 2.4E-08 52.3 2.6 23 186-208 1-23 (155)
412 KOG0066 eIF2-interacting prote 96.7 0.0021 4.6E-08 58.5 4.5 50 185-234 291-343 (807)
413 CHL00081 chlI Mg-protoporyphyr 96.7 0.0019 4.2E-08 57.5 4.3 46 163-208 17-62 (350)
414 TIGR02880 cbbX_cfxQ probable R 96.7 0.0036 7.9E-08 54.3 5.9 23 186-208 60-82 (284)
415 TIGR02640 gas_vesic_GvpN gas v 96.7 0.0062 1.4E-07 52.1 7.2 56 169-232 8-63 (262)
416 PRK14949 DNA polymerase III su 96.7 0.0064 1.4E-07 60.0 8.1 46 163-208 16-62 (944)
417 PRK14955 DNA polymerase III su 96.7 0.0022 4.9E-08 58.2 4.7 46 163-208 16-62 (397)
418 PRK14960 DNA polymerase III su 96.7 0.007 1.5E-07 58.0 8.0 46 163-208 15-61 (702)
419 TIGR02237 recomb_radB DNA repa 96.7 0.004 8.7E-08 51.1 5.8 47 184-234 12-58 (209)
420 PRK09087 hypothetical protein; 96.7 0.0028 6.1E-08 53.1 4.9 25 184-208 44-68 (226)
421 PRK14958 DNA polymerase III su 96.7 0.0068 1.5E-07 56.8 7.9 46 163-208 16-62 (509)
422 PF13476 AAA_23: AAA domain; P 96.7 0.0017 3.7E-08 52.3 3.4 23 184-206 19-41 (202)
423 TIGR03797 NHPM_micro_ABC2 NHPM 96.7 0.0014 3E-08 63.5 3.4 41 171-213 468-508 (686)
424 PRK06893 DNA replication initi 96.7 0.0046 1E-07 51.8 6.1 38 184-224 39-76 (229)
425 cd01393 recA_like RecA is a b 96.6 0.0061 1.3E-07 50.5 6.8 49 184-233 19-71 (226)
426 TIGR01842 type_I_sec_PrtD type 96.6 0.00069 1.5E-08 63.9 1.2 41 171-213 333-373 (544)
427 PRK10789 putative multidrug tr 96.6 0.00068 1.5E-08 64.3 1.1 41 171-213 330-370 (569)
428 cd02021 GntK Gluconate kinase 96.6 0.0014 3E-08 50.9 2.6 23 186-208 1-23 (150)
429 PRK06995 flhF flagellar biosyn 96.6 0.002 4.4E-08 59.7 4.1 25 184-208 256-280 (484)
430 PRK10416 signal recognition pa 96.6 0.0017 3.6E-08 57.3 3.4 26 183-208 113-138 (318)
431 COG4586 ABC-type uncharacteriz 96.6 0.0011 2.4E-08 56.8 2.1 35 175-211 43-77 (325)
432 PRK10522 multidrug transporter 96.6 0.0015 3.3E-08 61.6 3.2 35 172-208 339-373 (547)
433 COG1129 MglA ABC-type sugar tr 96.6 0.00078 1.7E-08 62.4 1.1 48 162-211 14-61 (500)
434 COG4604 CeuD ABC-type enteroch 96.6 0.00057 1.2E-08 55.9 0.2 41 166-208 11-51 (252)
435 PRK07003 DNA polymerase III su 96.6 0.0085 1.9E-07 58.2 8.1 46 163-208 16-62 (830)
436 TIGR00958 3a01208 Conjugate Tr 96.6 0.00085 1.8E-08 65.4 1.4 41 171-213 496-536 (711)
437 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0027 5.9E-08 63.1 4.9 45 164-208 174-218 (852)
438 PRK08903 DnaA regulatory inact 96.6 0.0034 7.3E-08 52.3 4.8 39 170-208 27-66 (227)
439 cd04163 Era Era subfamily. Er 96.6 0.0018 3.9E-08 49.9 3.0 25 184-208 3-27 (168)
440 PF00910 RNA_helicase: RNA hel 96.6 0.0015 3.2E-08 48.1 2.4 22 187-208 1-22 (107)
441 PRK11889 flhF flagellar biosyn 96.6 0.0017 3.7E-08 58.7 3.1 26 183-208 240-265 (436)
442 KOG0991 Replication factor C, 96.6 0.0032 6.9E-08 52.9 4.5 46 163-208 27-72 (333)
443 KOG0057 Mitochondrial Fe/S clu 96.6 0.015 3.3E-07 54.1 9.2 41 166-208 361-402 (591)
444 TIGR02204 MsbA_rel ABC transpo 96.6 0.0019 4.2E-08 61.2 3.6 41 171-213 355-395 (576)
445 PLN02318 phosphoribulokinase/u 96.6 0.0019 4.2E-08 61.0 3.5 27 182-208 63-89 (656)
446 KOG0927 Predicted transporter 96.5 0.0017 3.7E-08 60.2 2.9 32 186-217 103-134 (614)
447 COG1122 CbiO ABC-type cobalt t 96.5 0.0017 3.7E-08 54.8 2.7 28 179-208 27-54 (235)
448 COG3840 ThiQ ABC-type thiamine 96.5 0.0019 4.2E-08 52.3 2.9 32 186-221 27-58 (231)
449 PLN03211 ABC transporter G-25; 96.5 0.00046 1E-08 66.6 -0.8 27 180-208 92-118 (659)
450 TIGR02857 CydD thiol reductant 96.5 0.001 2.2E-08 62.4 1.5 36 171-208 337-372 (529)
451 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.002 4.3E-08 53.5 3.0 23 184-206 29-51 (213)
452 TIGR03796 NHPM_micro_ABC1 NHPM 96.5 0.00099 2.1E-08 64.8 1.5 41 171-213 494-534 (710)
453 COG1123 ATPase components of v 96.5 0.00083 1.8E-08 62.6 0.8 35 172-208 307-341 (539)
454 PRK11160 cysteine/glutathione 96.5 0.001 2.2E-08 63.2 1.5 41 171-213 355-395 (574)
455 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.0084 1.8E-07 47.0 6.4 43 166-208 81-126 (157)
456 PRK14964 DNA polymerase III su 96.5 0.011 2.4E-07 55.1 8.1 44 163-206 13-57 (491)
457 PRK13657 cyclic beta-1,2-gluca 96.5 0.002 4.3E-08 61.3 3.3 41 171-213 350-390 (588)
458 PRK14722 flhF flagellar biosyn 96.5 0.0032 6.9E-08 56.7 4.4 25 184-208 137-161 (374)
459 PRK08181 transposase; Validate 96.5 0.067 1.5E-06 46.1 12.4 42 177-223 101-142 (269)
460 PRK10536 hypothetical protein; 96.5 0.0055 1.2E-07 52.3 5.5 42 165-208 57-98 (262)
461 KOG0062 ATPase component of AB 96.5 0.00088 1.9E-08 61.7 0.7 39 166-206 90-128 (582)
462 TIGR01193 bacteriocin_ABC ABC- 96.5 0.0021 4.5E-08 62.6 3.4 40 172-213 490-529 (708)
463 TIGR03499 FlhF flagellar biosy 96.5 0.0023 4.9E-08 55.5 3.3 26 183-208 193-218 (282)
464 cd00879 Sar1 Sar1 subfamily. 96.5 0.0021 4.5E-08 51.7 2.9 25 183-207 18-42 (190)
465 PRK14951 DNA polymerase III su 96.5 0.0077 1.7E-07 57.6 7.1 46 163-208 16-62 (618)
466 COG4136 ABC-type uncharacteriz 96.5 0.0043 9.2E-08 48.8 4.3 36 181-221 27-64 (213)
467 COG4598 HisP ABC-type histidin 96.5 0.0015 3.3E-08 52.8 1.9 50 166-221 16-65 (256)
468 PF01078 Mg_chelatase: Magnesi 96.5 0.0045 9.8E-08 51.0 4.7 44 163-208 3-46 (206)
469 TIGR03375 type_I_sec_LssB type 96.5 0.0022 4.8E-08 62.2 3.4 41 171-213 480-520 (694)
470 COG1132 MdlB ABC-type multidru 96.5 0.00097 2.1E-08 63.2 0.9 37 170-208 343-379 (567)
471 PF13086 AAA_11: AAA domain; P 96.5 0.0079 1.7E-07 49.3 6.3 62 174-237 9-74 (236)
472 PTZ00132 GTP-binding nuclear p 96.5 0.0026 5.6E-08 52.4 3.3 25 184-208 9-34 (215)
473 PRK14738 gmk guanylate kinase; 96.5 0.0024 5.2E-08 52.6 3.1 25 183-207 12-36 (206)
474 PF03308 ArgK: ArgK protein; 96.5 0.0057 1.2E-07 52.1 5.3 57 171-228 14-72 (266)
475 PRK05201 hslU ATP-dependent pr 96.4 0.0052 1.1E-07 56.0 5.4 46 163-208 15-74 (443)
476 TIGR00954 3a01203 Peroxysomal 96.4 0.0024 5.3E-08 61.7 3.5 40 172-213 468-507 (659)
477 TIGR01192 chvA glucan exporter 96.4 0.0023 5E-08 61.0 3.3 40 172-213 351-390 (585)
478 PRK10790 putative multidrug tr 96.4 0.0024 5.1E-08 60.9 3.4 41 171-213 356-396 (592)
479 TIGR00750 lao LAO/AO transport 96.4 0.0074 1.6E-07 52.7 6.2 27 182-208 32-58 (300)
480 PRK13765 ATP-dependent proteas 96.4 0.0057 1.2E-07 58.7 5.9 70 163-237 31-100 (637)
481 cd01878 HflX HflX subfamily. 96.4 0.0023 4.9E-08 52.2 2.8 25 184-208 41-65 (204)
482 TIGR03238 dnd_assoc_3 dnd syst 96.4 0.0028 6.1E-08 58.5 3.6 18 185-202 33-50 (504)
483 PTZ00454 26S protease regulato 96.4 0.0038 8.2E-08 56.7 4.4 45 164-208 146-203 (398)
484 TIGR02203 MsbA_lipidA lipid A 96.4 0.0027 5.8E-08 60.1 3.6 35 172-208 348-382 (571)
485 PRK09361 radB DNA repair and r 96.4 0.011 2.4E-07 49.1 6.9 45 184-232 23-67 (225)
486 cd01394 radB RadB. The archaea 96.4 0.012 2.7E-07 48.5 7.1 42 183-227 18-59 (218)
487 KOG0058 Peptide exporter, ABC 96.4 0.013 2.9E-07 56.1 8.0 37 170-208 482-518 (716)
488 TIGR00764 lon_rel lon-related 96.4 0.0094 2E-07 57.1 7.2 69 163-236 18-86 (608)
489 PRK09435 membrane ATPase/prote 96.4 0.0084 1.8E-07 53.1 6.4 37 172-208 42-80 (332)
490 TIGR02902 spore_lonB ATP-depen 96.4 0.0067 1.5E-07 57.2 6.1 44 164-207 66-109 (531)
491 cd04138 H_N_K_Ras_like H-Ras/N 96.4 0.0027 5.9E-08 49.0 3.0 23 186-208 3-25 (162)
492 PRK00454 engB GTP-binding prot 96.4 0.0031 6.6E-08 50.8 3.4 27 181-207 21-47 (196)
493 TIGR00602 rad24 checkpoint pro 96.4 0.004 8.6E-08 59.7 4.5 46 163-208 84-134 (637)
494 PRK14527 adenylate kinase; Pro 96.4 0.003 6.5E-08 51.3 3.2 23 184-206 6-28 (191)
495 TIGR00231 small_GTP small GTP- 96.4 0.0028 6E-08 48.1 2.9 24 185-208 2-25 (161)
496 cd03116 MobB Molybdenum is an 96.4 0.0032 6.9E-08 49.9 3.2 24 185-208 2-25 (159)
497 PRK14969 DNA polymerase III su 96.4 0.013 2.9E-07 55.1 7.9 46 163-208 16-62 (527)
498 smart00178 SAR Sar1p-like memb 96.4 0.0051 1.1E-07 49.5 4.5 36 172-207 4-40 (184)
499 PRK08099 bifunctional DNA-bind 96.4 0.0026 5.7E-08 57.8 3.1 28 181-208 216-243 (399)
500 cd00154 Rab Rab family. Rab G 96.4 0.0029 6.3E-08 48.3 2.9 23 186-208 2-24 (159)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-21 Score=187.68 Aligned_cols=179 Identities=39% Similarity=0.593 Sum_probs=126.9
Q ss_pred HhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cccccHHHHHHHHH---------
Q 046124 60 FNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQ-------TMTRLNKVQGWLSR--------- 123 (238)
Q Consensus 60 ~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~-------~~~~~~~~~~Wl~~--------- 123 (238)
+.++++++.++...+.+...++..|++++..++.+++|++++...-.... ..........|+.+
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888888889999999999999999999999766532111110 01223344455544
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHhcCCcccccc-cCCCCCCCCCCCCCcc-eecHHHHH
Q 046124 124 ----------------------------FGKKVAKKLRDAGTLMANGAFEVVAE-RAPESVADERPIEPTV-VGLQLQLE 173 (238)
Q Consensus 124 ----------------------------~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vG~~~~~~ 173 (238)
+++++.+.+++++....++.|..... ..+...+..+|..+.. ||.+.+++
T Consensus 89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~ 168 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLE 168 (889)
T ss_pred HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHH
Confidence 12223333333333333344444432 1222234444444333 99999999
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHhC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIGE 238 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il~ 238 (238)
.++..|.+++..+|||+||||+||||||+.|+|+...+.++||.+|||+||++|+..+|+++|++
T Consensus 169 kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 169 KLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred HHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 99999999887999999999999999999999999339999999999999999999999999974
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.38 E-value=8.3e-13 Score=113.74 Aligned_cols=69 Identities=35% Similarity=0.577 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 168 LQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 168 ~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
|+..+++|.+.|.+ ++.++|+|+||||+||||||..+|++. ...++|+.++||.++..++...+++.|+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccc
Confidence 57789999999988 788999999999999999999999986 4789999999999999999998888876
No 3
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.11 E-value=6.6e-11 Score=110.12 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=87.7
Q ss_pred cccchhHHhhhhHhh----HhhHHHHHHHHH-hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 046124 45 RICRNILQISIDGAI----FNRCLDCFLGKA-ASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQG 119 (238)
Q Consensus 45 ~~~g~~~~~~l~~v~----~~~l~~~~~~e~-~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~ 119 (238)
.+.|+++-+++|+.| |++++++..+++ .|.+||..+++.-...++...+. .+++ ++..+..+.
T Consensus 198 ~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~----------~~~~--~~~~~~~~~ 265 (530)
T COG0488 198 RYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAA----------YEKQ--QKELAKEQE 265 (530)
T ss_pred hCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHHH----------HHHH--HHHHHHHHH
Confidence 466777777766665 455555555566 44555555555444333222222 2222 366788999
Q ss_pred HHHHHH------HHHHHHHHHHHHHHhc---------C---CcccccccC-CCCCCCCCCCCCcceec-HHHHHHHHHHh
Q 046124 120 WLSRFG------KKVAKKLRDAGTLMAN---------G---AFEVVAERA-PESVADERPIEPTVVGL-QLQLEHVWRCL 179 (238)
Q Consensus 120 Wl~~~~------~~~~~~i~~i~~~~~~---------~---~~~~~~~~~-~~~~~~~~~~~~~~vG~-~~~~~~l~~~L 179 (238)
|+.++. +++..++++++++... . .+.+...+. ++..+......+.-++. ...++++...+
T Consensus 266 ~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i 345 (530)
T COG0488 266 WIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRI 345 (530)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEe
Confidence 999943 3555566666655521 1 113333221 23333333333333322 23455555556
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++ +|+|+|+||+|||||+|.|.+...+..+
T Consensus 346 ~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 346 DRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 6677 9999999999999999999876533333
No 4
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-10 Score=104.08 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=96.1
Q ss_pred HhhhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH-------
Q 046124 52 QISIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRF------- 124 (238)
Q Consensus 52 ~~~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~~------- 124 (238)
+-.++.+ |++++++..++..|+.|.++++...+.|++..+.. +..++ ++.+...+..+.++
T Consensus 279 QDfln~v-CT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q~K----------~~~kq-qk~i~~~K~~ia~~g~g~a~~ 346 (614)
T KOG0927|consen 279 QDFLNGV-CTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQMK----------AYEKQ-QKQIAHMKDLIARFGHGSAKL 346 (614)
T ss_pred hhhhhhH-hhhhheecccceeeecCCHHHHhhHHHHHhHHHHH----------HHHHH-HhHHHHhhHHHHhhcccchhh
Confidence 3458888 99999999999999999999999888888776654 33333 37788888888884
Q ss_pred HHHHHHHHHHHHHHHhcC-----------CcccccccCCCCCCCCCCCCCcceecH---HHHHHHHHHhcCCcceEEEEE
Q 046124 125 GKKVAKKLRDAGTLMANG-----------AFEVVAERAPESVADERPIEPTVVGLQ---LQLEHVWRCLEGESVGIVGLY 190 (238)
Q Consensus 125 ~~~~~~~i~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~vG~~---~~~~~l~~~L~~~~~~vI~Iv 190 (238)
++++..+.+.+.++..++ .|.+......++++.-....+ +|.+ ..+.++..-+.-+. +|++|
T Consensus 347 ~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~--F~y~~~~~iy~~l~fgid~~s--rvAlV 422 (614)
T KOG0927|consen 347 GRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVS--FGYSDNPMIYKKLNFGIDLDS--RVALV 422 (614)
T ss_pred hHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccc--cCCCCcchhhhhhhcccCccc--ceeEe
Confidence 455555555555444321 122222222122222211111 3332 34555555554455 89999
Q ss_pred ecCCCchhHHHHHHHhhhccCCCC
Q 046124 191 GMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 191 G~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
||||+|||||+|++|++..+..++
T Consensus 423 GPNG~GKsTLlKl~~gdl~p~~G~ 446 (614)
T KOG0927|consen 423 GPNGAGKSTLLKLITGDLQPTIGM 446 (614)
T ss_pred cCCCCchhhhHHHHhhcccccccc
Confidence 999999999999999998665554
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.79 E-value=6.9e-09 Score=105.38 Aligned_cols=57 Identities=25% Similarity=0.529 Sum_probs=49.0
Q ss_pred CcceecHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEE
Q 046124 163 PTVVGLQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVV 222 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~ 222 (238)
..+||++...+++..+|. .++.++|+||||||+||||||+.+|+.. ..+|+..+|+.
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~ 242 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFID 242 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEee
Confidence 467999999999998875 3578899999999999999999999965 57899888763
No 6
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.78 E-value=1.5e-08 Score=86.07 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=45.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC--CCHHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD--SRLENIQETI 236 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~--~~~~~i~~~I 236 (238)
.+++|+|++|+|||||++.+|+.. ... +|+.++|++++++ +++.++++.|
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 399999999999999999999987 433 8999999998888 8999999987
No 7
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.68 E-value=2.6e-08 Score=88.97 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC--CHHHHHHHHh
Q 046124 175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS--RLENIQETIG 237 (238)
Q Consensus 175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~--~~~~i~~~Il 237 (238)
+++++.. +.-.+++|+|++|+||||||+.||+.. .. .+|++++||++++.+ ++.+++++|+
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 3444433 233499999999999999999999987 33 389999999999999 8899998874
No 8
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.4e-07 Score=83.26 Aligned_cols=151 Identities=13% Similarity=0.067 Sum_probs=74.7
Q ss_pred hhhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH-HHHHHHH
Q 046124 53 ISIDGAIFNRCLDCFLGKAASIRNLQKNVVALET-ELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSR-FGKKVAK 130 (238)
Q Consensus 53 ~~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~-el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~-~~~~~~~ 130 (238)
..+|.| |+.|+.+..+++-|+.|.+.-+.++-. .+..+....+..+.+...-.... ....+.+.-.++ +.++..+
T Consensus 470 gFLD~V-CtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~G--kS~KqAEkq~Ke~ltrKq~K 546 (807)
T KOG0066|consen 470 GFLDSV-CTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEG--KSAKQAEKQVKEQLTRKQKK 546 (807)
T ss_pred chHHHH-HHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHh
Confidence 568889 999999999999888777766654432 22222222222121111111111 111111111111 0000000
Q ss_pred ---HH------HHHHHHHhc-----CCcccccccCCCCCCCCCCCCCcce-ecHHHHHHHHHHhcCCcceEEEEEecCCC
Q 046124 131 ---KL------RDAGTLMAN-----GAFEVVAERAPESVADERPIEPTVV-GLQLQLEHVWRCLEGESVGIVGLYGMGGV 195 (238)
Q Consensus 131 ---~i------~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v-G~~~~~~~l~~~L~~~~~~vI~IvG~gGv 195 (238)
+- ....+++++ ..|.|+.++...|++.-.......| |.+..+.++.+-+.=+. +|+||||||+
T Consensus 547 ~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGV 624 (807)
T KOG0066|consen 547 GGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGV 624 (807)
T ss_pred ccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccc--eeEEECCCCc
Confidence 00 001111211 1455555444444444333333333 45555655554443334 8999999999
Q ss_pred chhHHHHHHHhhh
Q 046124 196 GKTTLLTHINNKF 208 (238)
Q Consensus 196 GKTTLak~i~~~~ 208 (238)
||+||++++.+..
T Consensus 625 GKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 625 GKSTLLKLLIGKL 637 (807)
T ss_pred cHHHHHHHHhcCC
Confidence 9999999999876
No 9
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.2e-08 Score=95.93 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=34.2
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
||....++++...+..++ +++|+|+||+|||||++.|.+...+..+.
T Consensus 322 y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~ 368 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGE 368 (638)
T ss_pred eCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 443334555555555667 99999999999999999999976444554
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=8.7e-07 Score=79.61 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=45.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC--CCHHHHHHHHh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD--SRLENIQETIG 237 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~--~~~~~i~~~Il 237 (238)
.+++|+|++|+|||||++.|++.. .. ++|+..+||+++++ .++.+++++|+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I-~~-nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI-TR-NHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh-cc-cCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 389999999999999999999987 33 48999999999977 79999999884
No 11
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.33 E-value=1.2e-07 Score=90.78 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=33.5
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+|....++++...+..++ +++|+|+||+|||||++.|++...+..+.
T Consensus 329 ~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~ 375 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGR 375 (635)
T ss_pred ECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 443334455544555566 99999999999999999999975334443
No 12
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.30 E-value=3.5e-06 Score=76.84 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=58.4
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
.++++.+...+.+...|...+ .|.++||+|+||||||+.+++.. .....|+.+.||++++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 346778889999999888765 78889999999999999999887 5556788999999999998887653
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.15 E-value=1.4e-06 Score=69.67 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=32.0
Q ss_pred ceecHHHHHHHHHHh---cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 165 VVGLQLQLEHVWRCL---EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L---~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++||++.++.+...| .....+.+-|+|+.|+|||||++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998 23467899999999999999999998877
No 14
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=3.6e-06 Score=69.99 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=34.2
Q ss_pred CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++++.-++. .+.+.-+-+|||+|+||||||+.|.++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 577999998888755543 2456789999999999999999999976
No 15
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=6.6e-05 Score=71.80 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++|.+.....+...+.......+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3578998888888887766656689999999999999999999866
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=1.2e-05 Score=60.77 Aligned_cols=59 Identities=27% Similarity=0.243 Sum_probs=44.1
Q ss_pred ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC
Q 046124 167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR 228 (238)
Q Consensus 167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~ 228 (238)
|++.....+...+.......+-|+|+.|+|||||++.+++.. . ..-..++++..++...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLE 60 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhh
Confidence 677788888888877555689999999999999999999976 2 1123456666555443
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.03 E-value=1.2e-06 Score=74.46 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.2
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
||....++++...+..++ +++|+||||+|||||+|.+++-.
T Consensus 12 y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 12 YGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence 444445555655566667 99999999999999999999866
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.03 E-value=1.7e-05 Score=71.49 Aligned_cols=73 Identities=21% Similarity=0.161 Sum_probs=50.8
Q ss_pred CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
..++||+.+++.+...|.+ +....+-|+|+.|+||||+++.++++. ......-..++|......+...++..|
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 4678999999999888743 344567899999999999999999976 332222234555555555555555544
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.95 E-value=7.7e-06 Score=67.50 Aligned_cols=44 Identities=34% Similarity=0.467 Sum_probs=36.9
Q ss_pred ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++||+.+++.|..++..+....+.|+|+.|+|||||++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 48999999999999988766799999999999999999999865
No 20
>PTZ00202 tuzin; Provisional
Probab=97.94 E-value=0.00019 Score=65.44 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCcceecHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 162 EPTVVGLQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
...++|++.+...+...|.+ +...++.|.|++|+|||||++.+.... . ..+++.-+. +..++++.|+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHH
Confidence 35779999999999888864 245689999999999999999999765 2 223333223 6688887775
No 21
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.93 E-value=2.8e-05 Score=69.33 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=51.9
Q ss_pred CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCCCCC---CEEEEEEeCCCCCHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF---NYVIWVVMSKDSRLENIQET 235 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F---d~~~wV~vs~~~~~~~i~~~ 235 (238)
..++|++.+++.|...|.+ +....+-|+|+.|+||||+++.++++........ -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 3678999999999888863 3445799999999999999999998752111111 13456665555555556555
Q ss_pred Hh
Q 046124 236 IG 237 (238)
Q Consensus 236 Il 237 (238)
|+
T Consensus 95 i~ 96 (365)
T TIGR02928 95 LA 96 (365)
T ss_pred HH
Confidence 43
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.92 E-value=5.9e-05 Score=64.28 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=34.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
....+.|+|++|+|||||++.+++.. .. +.+ ..+|+ ++...+..+++..|+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~ 92 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVA 92 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHH
Confidence 34589999999999999999999976 32 221 23343 334456667766654
No 23
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.77 E-value=2.2e-05 Score=58.69 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|.|.|+.|+||||+|+.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999865
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=7e-06 Score=69.58 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++++...+..++ .++|+||||.|||||+|.+.+-..+.++
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 35556655566666 9999999999999999999995533333
No 25
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=1.6e-05 Score=65.44 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhc
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFL 209 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~ 209 (238)
++.+..-+..++ +.+|+||||.|||||+|.++++..
T Consensus 17 l~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 17 LDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred ccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccC
Confidence 334444445567 999999999999999999999874
No 26
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.70 E-value=1.1e-05 Score=65.47 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 14 ~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGE--VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344456 99999999999999999999865
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.68 E-value=4.9e-05 Score=69.32 Aligned_cols=46 Identities=33% Similarity=0.383 Sum_probs=38.3
Q ss_pred CcceecHHHHHH---HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEH---VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~---l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+.. +..++..+....+-++|++|+||||||+.+++..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888877665 7777777777788999999999999999999865
No 28
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=9.7e-06 Score=66.84 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|.+......+
T Consensus 24 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 24 IKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 34455 9999999999999999999987533334
No 29
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00061 Score=64.94 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCcceecHHHHHHHHHHhc-----C-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 162 EPTVVGLQLQLEHVWRCLE-----G-ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~-----~-~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+-||.+..++.|+++|- . -+-.++++|||+|+|||.|++.|....
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 3455999999999999874 1 244699999999999999999999865
No 30
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=1.1e-05 Score=67.84 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=31.4
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|....++++...+..++ .|+|+|+.|||||||++.|.+-.
T Consensus 13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 343344555555556677 99999999999999999999865
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.66 E-value=5.2e-05 Score=66.02 Aligned_cols=46 Identities=33% Similarity=0.441 Sum_probs=38.5
Q ss_pred CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|++..++.+..++. .+....+-++|+.|+||||||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999999888775 2345568899999999999999999876
No 32
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=2e-05 Score=65.44 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 17 ~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 17 RGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33333344556 99999999999999999999875
No 33
>PLN03073 ABC transporter F family; Provisional
Probab=97.66 E-value=7e-05 Score=72.81 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
.++++...+..++ +|+|+|+||+|||||++.|.+...+..+.
T Consensus 524 il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~ 565 (718)
T PLN03073 524 LFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGT 565 (718)
T ss_pred eEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCce
Confidence 3444444445566 99999999999999999999976344443
No 34
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=9.8e-06 Score=67.16 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++.+...+..++ +++|+|+||+|||||++.+.+......+
T Consensus 26 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 26 VFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred eeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 3444444455566 9999999999999999999987533333
No 35
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.65 E-value=3.9e-05 Score=58.59 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.+++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 99999999999999999999866
No 36
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.65 E-value=1.4e-05 Score=66.04 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 15 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 15 LEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred eecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 344444445566 9999999999999999999997533444
No 37
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.65 E-value=7.8e-05 Score=66.33 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=45.0
Q ss_pred cceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhhcc----CCCCCCEEEE
Q 046124 164 TVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKFLE----SPTNFNYVIW 220 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~~~----v~~~Fd~~~w 220 (238)
+++|.++.+++++.++.. ...+++.++||.|+||||||+.|.+.... ..+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 689999999999998864 24578899999999999999999987721 1345555566
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=1.5e-05 Score=65.83 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 16 LDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 333433444566 99999999999999999999865
No 39
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.63 E-value=4e-05 Score=63.44 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=26.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 22 ~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 22 GVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCc
Confidence 3333344556 99999999999999999999876
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.63 E-value=1.4e-05 Score=65.69 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..+..++ +++|+|+||+|||||++.+++...+..+
T Consensus 21 ~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 21 LDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred EEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3344556 9999999999999999999997533444
No 41
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.63 E-value=1.9e-05 Score=66.55 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 18 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 18 LKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence 334444445566 99999999999999999999865
No 42
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.63 E-value=1.5e-05 Score=66.11 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|++-..+..+
T Consensus 18 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 18 VDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred ecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 333433444566 9999999999999999999987533334
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.62 E-value=3.8e-05 Score=58.02 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhcc---CCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLE---SPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~---v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
.+.+.|+|+.|+||||+++.+...... ... -..++|+..+...+...+...|+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 59 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEIL 59 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999999999986511 001 34567999988888888888775
No 44
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.62 E-value=9.7e-05 Score=69.88 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=33.2
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+|....++++...+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 334 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G 379 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSG 379 (556)
T ss_pred ECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 343334555555555667 9999999999999999999987533333
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.62 E-value=8e-05 Score=66.55 Aligned_cols=46 Identities=33% Similarity=0.393 Sum_probs=35.1
Q ss_pred CcceecHHHH---HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQL---EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~---~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++||.+..+ .-|-..+..+.+.-.-+|||+|+||||||+.|.+..
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 4567776654 234445566788889999999999999999999854
No 46
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.61 E-value=1.2e-05 Score=68.28 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.++++...+..++ +++|+|+||+|||||++.+.+-
T Consensus 21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 21 ALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhh
Confidence 3444444445566 9999999999999999999975
No 47
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.61 E-value=1.7e-05 Score=66.30 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 22 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 22 ILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred eeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3444444445566 9999999999999999999987533333
No 48
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.61 E-value=2.8e-05 Score=72.82 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=44.4
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEE---EEEEeCCCCCHH
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYV---IWVVMSKDSRLE 230 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~---~wV~vs~~~~~~ 230 (238)
+|....++++...+..++ +||+||.||+|||||++.|.+...+..+..... ---+++|.....
T Consensus 13 ~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 13 YGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence 566666777777777777 999999999999999999999774444543221 122566665544
No 49
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.61 E-value=5e-05 Score=63.00 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.2
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++|+|+||+|||||++.|++-..+..+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 99999999999999999999875445555
No 50
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.60 E-value=1.8e-05 Score=65.95 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 21 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 21 LDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred ecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 333433444566 9999999999999999999987533333
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.60 E-value=1.8e-05 Score=66.15 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 16 VNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 334444445566 99999999999999999999865
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.60 E-value=9.9e-05 Score=65.37 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=42.3
Q ss_pred cceecHHHHHH---HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC----CCHHHHHH
Q 046124 164 TVVGLQLQLEH---VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD----SRLENIQE 234 (238)
Q Consensus 164 ~~vG~~~~~~~---l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~----~~~~~i~~ 234 (238)
+.||.+..+.+ |-.++..+...-+-+||++|+||||||+.|.+.. +... ..+|..|-. .|++++.+
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHH
Confidence 44665544332 3344455777889999999999999999999865 2222 445655543 44444443
No 53
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.59 E-value=4.8e-05 Score=62.93 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+-.
T Consensus 26 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGE--MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.59 E-value=1.7e-05 Score=65.51 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 16 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 16 LDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 333333344566 99999999999999999999875
No 55
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.59 E-value=1.4e-05 Score=65.52 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+..
T Consensus 21 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGK--MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34456 99999999999999999999876
No 56
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=5.2e-05 Score=61.23 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+-..+..+
T Consensus 22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 22 VKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred ECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence 34456 9999999999999999999986533334
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=8.4e-05 Score=61.22 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGE--IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 58
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=2.4e-05 Score=65.61 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY 217 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~ 217 (238)
.++++..-+.+++ +|||+|.||+|||||+|.|.+-.++.++.-.+
T Consensus 42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v 86 (249)
T COG1134 42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86 (249)
T ss_pred EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEE
Confidence 3444444555667 99999999999999999999987666666544
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=5.2e-05 Score=63.59 Aligned_cols=29 Identities=31% Similarity=0.435 Sum_probs=25.0
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.+.+..
T Consensus 22 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 22 DVRRGE--ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344556 99999999999999999999875
No 60
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=4.9e-05 Score=61.11 Aligned_cols=29 Identities=41% Similarity=0.518 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.+.+..
T Consensus 22 ~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 22 NIEAGE--IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344556 99999999999999999999865
No 61
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.58 E-value=1.6e-05 Score=69.41 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=26.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+-..+..+
T Consensus 15 ~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 15 KVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred EEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 344456 9999999999999999999987533333
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=1.6e-05 Score=67.01 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=26.4
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 ~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 20 DVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3333344556 99999999999999999999875
No 63
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.57 E-value=1.6e-05 Score=67.92 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 27 il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 27 VLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3444444444566 9999999999999999999987533334
No 64
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.57 E-value=1.6e-05 Score=66.99 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 37 l~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 37 LKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence 333333344456 99999999999999999999865
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=1.7e-05 Score=66.66 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=26.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+-..+..+
T Consensus 23 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 23 SINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 344556 9999999999999999999986533333
No 66
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.57 E-value=1.8e-05 Score=66.37 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=26.3
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+...+..++ +++|+|+||+|||||++.+.+..
T Consensus 18 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 18 DVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CceEEecCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence 3333344556 99999999999999999999875
No 67
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=1.7e-05 Score=65.22 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 22 ~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 22 FTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred EEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3344556 9999999999999999999987533333
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.56 E-value=6e-05 Score=62.22 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 18 l~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 18 LHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 334434445566 99999999999999999999875
No 69
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=1.9e-05 Score=67.36 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=26.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 23 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 23 TLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred EECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 344556 9999999999999999999987533333
No 70
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.56 E-value=2e-05 Score=65.86 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 16 l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 16 LRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred ecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 344444455566 9999999999999999999987633333
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.56 E-value=1.7e-05 Score=65.87 Aligned_cols=28 Identities=43% Similarity=0.578 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+-.
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGE--IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCe--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 99999999999999999999875
No 72
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.55 E-value=2e-05 Score=65.00 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+..
T Consensus 23 i~~G~--~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGE--VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 73
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.55 E-value=2.2e-05 Score=64.82 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=34.3
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.||....++.+...+..++ |++|+||.|+|||||++.|..-.
T Consensus 10 K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCc
Confidence 34666566666666666777 99999999999999999998755
No 74
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.55 E-value=5.9e-05 Score=62.60 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 28 i~~G~--~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGE--IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 75
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.54 E-value=7.1e-05 Score=63.53 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=24.6
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++|+|+||+|||||++.|.+...+..+.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~ 55 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGD 55 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 99999999999999999999976344443
No 76
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=6.8e-05 Score=61.17 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++ +++|+|+||+|||||++.+.+......+
T Consensus 25 ~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 25 PSA--ITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 345 9999999999999999999997533333
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.54 E-value=1.8e-05 Score=65.97 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=24.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+..
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGE--ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 34456 99999999999999999999865
No 78
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.53 E-value=6.3e-05 Score=62.77 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|+||+|||||++.|++-.
T Consensus 28 ~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 28 GVELVVKRGE--TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred ccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence 3333344556 99999999999999999999875
No 79
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.53 E-value=2.1e-05 Score=66.15 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
++++...+..++ +++|+|+||+|||||++.|.+.
T Consensus 16 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 16 LKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 334444445566 9999999999999999999986
No 80
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.53 E-value=6.4e-05 Score=60.63 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
+..++ +++|+|+||+|||||++.+..
T Consensus 18 i~~G~--~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNV--LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhh
Confidence 34455 999999999999999999964
No 81
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=1.9e-05 Score=65.65 Aligned_cols=41 Identities=39% Similarity=0.392 Sum_probs=31.5
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
||.-..+..+...+..++ +++++|+||+|||||++.|++-.
T Consensus 13 YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 13 YGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred ccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 444444444545555667 99999999999999999999976
No 82
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=2.4e-05 Score=67.25 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 17 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (271)
T PRK13638 17 LKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKG 56 (271)
T ss_pred ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence 333333344556 9999999999999999999986533333
No 83
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=2.3e-05 Score=75.33 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=33.9
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+|....++++...+..++ +++|+|+||+|||||++.|.+...+..+.
T Consensus 11 ~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~ 57 (638)
T PRK10636 11 RGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGS 57 (638)
T ss_pred eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 444344455555555667 99999999999999999999975344443
No 84
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.52 E-value=1.8e-05 Score=64.72 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 23 LNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 44456 9999999999999999999997533333
No 85
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.52 E-value=2.4e-05 Score=66.17 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 19 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 19 LHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 333434444566 99999999999999999999875
No 86
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=2.5e-05 Score=65.80 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|++|+|||||++.|++..
T Consensus 20 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 20 DITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3333344556 99999999999999999999875
No 87
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=6.7e-05 Score=62.28 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=26.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 26 ~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 26 SVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred EEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 344556 9999999999999999999987533333
No 88
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.51 E-value=7.5e-05 Score=61.57 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.|++..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998754
No 89
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.51 E-value=3.9e-05 Score=63.53 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 27 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGE--VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence 344456 99999999999999999999875
No 90
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.50 E-value=0.00024 Score=67.19 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=32.8
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+|....++++...+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 332 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G 377 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSG 377 (552)
T ss_pred ECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 333334555544555566 9999999999999999999987533334
No 91
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=7.5e-05 Score=61.15 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=26.1
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+.+++ +++|+|++|+|||||++.|.+..
T Consensus 20 ~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 20 ISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eeEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 333344556 99999999999999999999875
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=2.5e-05 Score=67.08 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=26.4
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 42 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 42 DVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 3333344456 99999999999999999999876
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.50 E-value=7.5e-05 Score=61.58 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+..
T Consensus 24 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGE--FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34455 99999999999999999999875
No 94
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.49 E-value=8.6e-05 Score=61.18 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|.|++|+|||||++.|+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998764
No 95
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=2.5e-05 Score=65.88 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=26.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 25 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 58 (241)
T PRK14250 25 KFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEG 58 (241)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 344456 9999999999999999999987533333
No 96
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=9e-05 Score=62.03 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+...+..++ +++|+|+||+|||||++.+.+......+
T Consensus 23 ~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 23 DVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred cceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3333344556 9999999999999999999987633333
No 97
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.48 E-value=8.2e-05 Score=62.49 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGE--FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence 44456 99999999999999999999875
No 98
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.48 E-value=8.3e-05 Score=62.30 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++|+|+||+|||||++.+.+-..+..+
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999987633334
No 99
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.48 E-value=3.2e-05 Score=63.48 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+..++ +++|+|+||+|||||++.|.+..
T Consensus 19 isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 19 LSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 333344556 99999999999999999999875
No 100
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=8.3e-05 Score=59.51 Aligned_cols=28 Identities=43% Similarity=0.587 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.+.+..
T Consensus 23 i~~Ge--~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGE--IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 99999999999999999999875
No 101
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.48 E-value=2.8e-05 Score=67.96 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 19 ~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 19 VVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444455566 99999999999999999999865
No 102
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=3.4e-05 Score=65.37 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 19 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 19 LDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 344444455566 99999999999999999999865
No 103
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.0002 Score=59.81 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 168 LQLQLEHVWRCLE---GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 168 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...++.|.+.+. .+...+|+|.|..|+||||||+.|....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666664 3577899999999999999999999876
No 104
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.46 E-value=8.5e-05 Score=61.08 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=24.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+..
T Consensus 23 i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGE--IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence 33455 99999999999999999999865
No 105
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.46 E-value=3.4e-05 Score=65.29 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 17 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 17 LKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 334444445566 99999999999999999999865
No 106
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=2.2e-05 Score=67.34 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.++++...+..++ +++|+|+||+|||||++.|.+-
T Consensus 36 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 36 AVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhc
Confidence 3444444445566 9999999999999999999874
No 107
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.45 E-value=3.2e-05 Score=65.95 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|.+......+
T Consensus 18 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 18 LDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred eeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 333333444566 9999999999999999999997533333
No 108
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=3.4e-05 Score=65.45 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 19 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 19 VIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 3444444455566 99999999999999999999865
No 109
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0001 Score=61.85 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 32 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGE--MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34456 99999999999999999999875
No 110
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.002 Score=60.25 Aligned_cols=25 Identities=36% Similarity=0.708 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999887754
No 111
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=7.1e-05 Score=63.91 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
.++++. .+..++ +++|+|+||+|||||++.|++-..+..+.
T Consensus 16 ~l~~i~-~i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~ 56 (255)
T cd03236 16 KLHRLP-VPREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred hhhcCC-CCCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 344443 344566 99999999999999999999977444443
No 112
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=2.9e-05 Score=66.14 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 20 VEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence 333333344566 99999999999999999999865
No 113
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.44 E-value=0.00011 Score=58.58 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=27.0
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+..++ +++|+|++|+|||||++.+.+......+.
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (166)
T cd03223 24 IKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGR 57 (166)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 33455 99999999999999999999976344443
No 114
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.44 E-value=0.00021 Score=59.88 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.6
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+|+|.|++|+|||||++.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 115
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0014 Score=64.53 Aligned_cols=46 Identities=30% Similarity=0.305 Sum_probs=36.9
Q ss_pred CcceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++.. ....++.++|++|+||||||+.|.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999888888876531 133489999999999999999999876
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0002 Score=61.42 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++++.-.+. ++.+.-|-++||+|+||||||..|.++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 467999999988866664 3456689999999999999999999987
No 117
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.44 E-value=2.6e-05 Score=66.35 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|.+......+
T Consensus 17 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 17 VDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred EeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 333333444566 9999999999999999999987533334
No 118
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=4.3e-05 Score=64.93 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 22 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 22 ALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3444544555667 99999999999999999999865
No 119
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.44 E-value=3.5e-05 Score=67.50 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.8
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+|....++++...+..++ +++|+|+||+|||||++.|.+-..+..+
T Consensus 17 ~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred ECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 443334455555555666 9999999999999999999987633333
No 120
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=9e-05 Score=61.08 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.+++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999865
No 121
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.43 E-value=2.8e-05 Score=67.70 Aligned_cols=45 Identities=33% Similarity=0.366 Sum_probs=34.4
Q ss_pred ccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124 164 TVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE 210 (238)
Q Consensus 164 ~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~ 210 (238)
+.+| ....++++...+..++ +++++|+||+|||||++.+.+...+
T Consensus 12 k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 12 KKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3355 3455666666666666 9999999999999999999997633
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00011 Score=61.89 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGE--FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34456 99999999999999999999875
No 123
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.0001 Score=58.48 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.+.+..
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGE--VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 44556 99999999999999999999876
No 124
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00011 Score=60.53 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=26.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 20 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 20 TFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 344556 9999999999999999999987633333
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=3.1e-05 Score=66.33 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 26 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 26 LLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence 3444444455566 99999999999999999999875
No 126
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.43 E-value=0.00015 Score=63.99 Aligned_cols=46 Identities=37% Similarity=0.499 Sum_probs=38.1
Q ss_pred CcceecHHHHHHHHHHhc-----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE-----GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~-----~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|++...+.+..++. ......+-|+|+.|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 467999999988877664 2345578899999999999999999976
No 127
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.43 E-value=5.7e-05 Score=63.59 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-+..++ +++|+|+||+|||||++.|.+..
T Consensus 23 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 23 NIDQGE--VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344556 99999999999999999999875
No 128
>PLN03025 replication factor C subunit; Provisional
Probab=97.42 E-value=0.00049 Score=60.56 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.++..+.|..++..+...-+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4668998888888888877766667799999999999999998875
No 129
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.42 E-value=4.3e-05 Score=63.79 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++..-+..++ +++|+|+||+|||||++.+.+..
T Consensus 37 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 37 ALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3334433444556 99999999999999999999865
No 130
>PRK10908 cell division protein FtsE; Provisional
Probab=97.42 E-value=0.00012 Score=60.93 Aligned_cols=28 Identities=32% Similarity=0.352 Sum_probs=24.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGE--MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34556 99999999999999999999876
No 131
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.42 E-value=9.7e-05 Score=62.86 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=26.0
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++ +++|+|+||+|||||++.|++...+..+
T Consensus 28 ~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 28 KPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3455 9999999999999999999987533344
No 132
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.42 E-value=0.00012 Score=60.26 Aligned_cols=29 Identities=38% Similarity=0.439 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 24 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGE--ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 334456 99999999999999999999975
No 133
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.42 E-value=0.00013 Score=60.79 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=27.1
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ +++|+|+||+|||||++.|++..
T Consensus 25 ~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 25 KNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33333344566 99999999999999999999875
No 134
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.42 E-value=0.00013 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.9
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|++|+|||||++.|.+..
T Consensus 26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGE--SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 3455 99999999999999999999875
No 135
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=3.7e-05 Score=65.60 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++..-+..++ +++|+|+||+|||||++.|.+..
T Consensus 29 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 29 LKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 444444445566 99999999999999999999864
No 136
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00011 Score=61.41 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=26.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 25 IPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 34456 9999999999999999999987633444
No 137
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00012 Score=58.38 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|++......+
T Consensus 25 i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 25 IKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 34456 9999999999999999999997633333
No 138
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.41 E-value=0.00012 Score=58.75 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.9
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++ +++|+|++|+|||||++.+.+......+
T Consensus 26 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 26 KQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 3455 9999999999999999999997633333
No 139
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=8.2e-05 Score=59.66 Aligned_cols=50 Identities=26% Similarity=0.295 Sum_probs=41.0
Q ss_pred CCcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 162 EPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+++||-..-+.++.+-|..++ |.+|||..|+|||||++.|.....+..+
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G 61 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAG 61 (258)
T ss_pred hhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence 4566777777888888888888 9999999999999999999987644333
No 140
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.41 E-value=0.00012 Score=62.46 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=28.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++...+..++ +++|+|+||+|||||++.+++...+..+
T Consensus 24 ~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 61 (258)
T PRK11701 24 DVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAG 61 (258)
T ss_pred eeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 3333344566 9999999999999999999997633334
No 141
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.40 E-value=0.002 Score=63.32 Aligned_cols=47 Identities=28% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCcceecHHHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 162 EPTVVGLQLQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+.+|.+..++.|+.+|.- ....++.++|++|+|||||++.+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999887752 234589999999999999999999865
No 142
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.40 E-value=0.00011 Score=60.63 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.0
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++ +++|+|++|+|||||++.|++...+..+
T Consensus 22 ~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 22 ADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred eCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3456 9999999999999999999997633333
No 143
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.40 E-value=0.00012 Score=59.07 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 23 i~~G~--~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGE--IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 99999999999999999999875
No 144
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00011 Score=60.69 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=22.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|+||+|||||++.+.+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 599999999999999999999875
No 145
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.40 E-value=0.00012 Score=57.05 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=25.8
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..++ +++|+|++|+|||||++.+.+......+
T Consensus 24 ~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (144)
T cd03221 24 NPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEG 55 (144)
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 3455 9999999999999999999987633334
No 146
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.40 E-value=0.00013 Score=61.32 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=26.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 26 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G 58 (238)
T cd03249 26 IPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSG 58 (238)
T ss_pred ecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence 34456 9999999999999999999997633444
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=3.6e-05 Score=65.37 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+.+..-+..++ +++|+|+||+|||||++.|++..++..+
T Consensus 22 ~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 22 NNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred EeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 33333344555 9999999999999999999987533333
No 148
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=2.4e-05 Score=67.38 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|++-.
T Consensus 35 ~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 35 ALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3444444445566 99999999999999999999753
No 149
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=4.1e-05 Score=64.89 Aligned_cols=33 Identities=36% Similarity=0.408 Sum_probs=25.8
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+++...+..++ +++|+|+||+|||||++.|.+-
T Consensus 22 ~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 22 NSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence 33333344556 9999999999999999999874
No 150
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.39 E-value=5.4e-05 Score=64.93 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 29 l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 68 (267)
T PRK15112 29 VKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred eeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 344444445566 9999999999999999999987633333
No 151
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.39 E-value=0.00012 Score=61.32 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.|++..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 99999999999999999999976
No 152
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.39 E-value=0.00013 Score=62.66 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 30 VPRGK--ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 99999999999999999999875
No 153
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.39 E-value=4.3e-05 Score=67.87 Aligned_cols=48 Identities=27% Similarity=0.247 Sum_probs=35.1
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+.||....++++..-+..++ .+++.||+|||||||++.|.+=..+..+
T Consensus 13 k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G 60 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSG 60 (352)
T ss_pred eecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34564445555655566677 9999999999999999999986533333
No 154
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.39 E-value=0.0007 Score=58.99 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++..+....+-++|+.|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988766678999999999999999999876
No 155
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00014 Score=61.30 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=26.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 ~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 20 EDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33333344556 99999999999999999999975
No 156
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.38 E-value=4.9e-05 Score=65.06 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|++..
T Consensus 22 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 22 VAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence 3444444455566 99999999999999999999976
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00011 Score=63.33 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++-.
T Consensus 30 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGS--YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999865
No 158
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.38 E-value=3.8e-05 Score=73.80 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 18 il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G 58 (635)
T PRK11147 18 LLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDG 58 (635)
T ss_pred eEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 4444444455566 9999999999999999999997533333
No 159
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.38 E-value=3.6e-05 Score=68.45 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=32.8
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+|....++++..-+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 51 y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 51 YGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred ECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 443334445544455566 9999999999999999999997633333
No 160
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.38 E-value=4.1e-05 Score=65.99 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 17 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 17 LRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 333433444556 99999999999999999999875
No 161
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=4.4e-05 Score=64.67 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 19 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 19 VKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 333434445566 99999999999999999999754
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=4.1e-05 Score=64.34 Aligned_cols=35 Identities=37% Similarity=0.435 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 21 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 21 LHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence 333333444566 99999999999999999999875
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=2.6e-05 Score=67.02 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++..-+..++ +++|+|+||+|||||++.|.+..
T Consensus 29 l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 29 VKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 444444445566 99999999999999999999864
No 164
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.37 E-value=4.7e-05 Score=64.34 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+...+..++ +++|+|+||+|||||++.|.+.
T Consensus 20 isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 20 LNLEVRPGE--VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred ceeEEcCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence 333344556 9999999999999999999997
No 165
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=4.3e-05 Score=64.97 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 20 DLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred eeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCc
Confidence 3333344556 99999999999999999999865
No 166
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.37 E-value=6.8e-05 Score=62.96 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=36.0
Q ss_pred ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124 165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE 210 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~ 210 (238)
.++.+..+.+|...+..++ .-.|+|+||+|||||++.+..+..+
T Consensus 40 ~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCC
Confidence 3556667777777777777 8999999999999999999988744
No 167
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.37 E-value=6.2e-05 Score=63.84 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=27.2
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ +++|+|+||+|||||++.+.+..
T Consensus 20 ~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 20 RDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred ecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33434444566 99999999999999999999875
No 168
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.37 E-value=5e-05 Score=65.00 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 25 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 25 AVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence 3444444455566 99999999999999999999743
No 169
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=4.3e-05 Score=64.86 Aligned_cols=29 Identities=31% Similarity=0.498 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 26 DFPENS--VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 344556 99999999999999999999864
No 170
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=8.2e-05 Score=64.40 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC--CCEEEEEEeCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN--FNYVIWVVMSK 225 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~--Fd~~~wV~vs~ 225 (238)
++..-+.+++ .+++.|++|+|||||++.|.+-..+..+. |+...|..+++
T Consensus 20 di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 20 DISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred cceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence 3444445666 99999999999999999999976455554 77788887766
No 171
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00012 Score=61.42 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ ++||+|..|+|||||++.+.+-.
T Consensus 22 ~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 22 ALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhccc
Confidence 4444444445567 99999999999999999998754
No 172
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=3.1e-05 Score=66.54 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=26.6
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 41 ~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 41 KNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 33333344456 99999999999999999999865
No 173
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=5.4e-05 Score=64.11 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++..-+..++ +++|+|+||+|||||++.|.+-.
T Consensus 21 ~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 21 KINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred cceEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3333344566 99999999999999999999753
No 174
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.36 E-value=0.00017 Score=58.05 Aligned_cols=28 Identities=39% Similarity=0.700 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.+++..
T Consensus 22 i~~G~--~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGE--IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33455 99999999999999999999975
No 175
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00015 Score=62.87 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=26.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|++|+|||||++.|.+...+..+
T Consensus 33 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 66 (289)
T PRK13645 33 TFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETG 66 (289)
T ss_pred EEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 344556 9999999999999999999987633333
No 176
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00014 Score=62.53 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 30 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 62 (272)
T PRK15056 30 VPGGS--IAALVGVNGSGKSTLFKALMGFVRLASG 62 (272)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34455 9999999999999999999987533334
No 177
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00014 Score=60.84 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=26.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 22 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 22 VERGE--RVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34456 9999999999999999999987533333
No 178
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.35 E-value=0.00014 Score=61.61 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGE--KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 44556 99999999999999999999875
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.35 E-value=0.00016 Score=60.62 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+..
T Consensus 25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGE--VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCc
Confidence 34456 99999999999999999999875
No 180
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.35 E-value=0.00017 Score=59.76 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|++|+|||||++.|.+...+..+
T Consensus 26 ~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 26 TIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 344556 9999999999999999999987533333
No 181
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00014 Score=63.12 Aligned_cols=38 Identities=37% Similarity=0.444 Sum_probs=28.6
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++...+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 25 ~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13641 25 NISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSG 62 (287)
T ss_pred eeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3333344566 9999999999999999999987633334
No 182
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00014 Score=62.74 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|++-..+..+
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (279)
T PRK13650 30 VKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESG 62 (279)
T ss_pred EeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 34456 9999999999999999999987533444
No 183
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00014 Score=59.17 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+..++ +++|+|+||+|||||++.+.+.
T Consensus 30 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGT--LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCc--EEEEECCCCCCHHHHHHHHhCC
Confidence 33455 9999999999999999999985
No 184
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.34 E-value=7.3e-05 Score=69.56 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.+++..
T Consensus 18 il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 18 TLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 3444444455566 99999999999999999999875
No 185
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=4.6e-05 Score=71.63 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++...+..++ +++|+|+||+|||||++.|++...+..+.
T Consensus 18 ~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 57 (530)
T PRK15064 18 ENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGN 57 (530)
T ss_pred eCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 33333444556 99999999999999999999976344443
No 186
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00017 Score=60.08 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++...+..++ +++|+|++|+|||||++.+.+......+
T Consensus 20 ~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 20 KDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred cceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 33333344556 8999999999999999999987633333
No 187
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00016 Score=62.01 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 47 i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 47 AYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 33455 9999999999999999999997633333
No 188
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00018 Score=60.26 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|.+......+
T Consensus 24 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 24 IPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 34455 9999999999999999999987633344
No 189
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.34 E-value=0.00037 Score=57.79 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 168 LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 168 ~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++.+..++.......|-|+|+.|+||||||+.+++..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45577777777655556689999999999999999999876
No 190
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.33 E-value=0.00016 Score=60.86 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.+.+..
T Consensus 24 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 24 YVDPGE--LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344556 99999999999999999999875
No 191
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.33 E-value=0.00019 Score=59.50 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|++..
T Consensus 24 i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQ--LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 34455 99999999999999999999875
No 192
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.33 E-value=0.00026 Score=61.56 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.0
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+.+|||.|++|+|||||++.+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999886544
No 193
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.33 E-value=0.00017 Score=59.83 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|++|+|||||++.+.+...+..+
T Consensus 20 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 20 LKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred ccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 334444445566 9999999999999999999987533333
No 194
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.33 E-value=0.0003 Score=61.86 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=40.1
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+..++..+....+-++|+.|+||||||+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999888765668899999999999999998866
No 195
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.33 E-value=0.00015 Score=61.71 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=26.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|++|+|||||++.|.+...+..+
T Consensus 27 ~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G 60 (257)
T PRK10619 27 QANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEG 60 (257)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 344456 9999999999999999999997633333
No 196
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.33 E-value=0.00028 Score=58.66 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 23 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 23 VPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34456 9999999999999999999987533333
No 197
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.32 E-value=0.00017 Score=60.11 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=23.7
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++|+|++|+|||||++.+.+......+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G 35 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPAKG 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999987533333
No 198
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00017 Score=62.06 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=27.1
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 24 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 24 VIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred EEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 344566 9999999999999999999997633333
No 199
>PRK06547 hypothetical protein; Provisional
Probab=97.32 E-value=0.00033 Score=56.26 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+..+...+|+|.|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556778899999999999999999998764
No 200
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00015 Score=62.39 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|++-.....+
T Consensus 25 i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (275)
T PRK13639 25 AEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSG 57 (275)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 44566 9999999999999999999987533333
No 201
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00017 Score=62.62 Aligned_cols=33 Identities=36% Similarity=0.624 Sum_probs=26.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+++-..+..+
T Consensus 30 i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13637 30 IEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSG 62 (287)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence 44556 9999999999999999999987633334
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=6.2e-05 Score=63.70 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+...+..++ +++|+|+||+|||||++.|.+..
T Consensus 19 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 19 LKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred eecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 344444445566 99999999999999999999865
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=5.5e-05 Score=64.11 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 26 DFEEKE--LTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence 344556 99999999999999999999865
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00017 Score=61.47 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=24.0
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 35 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENE--VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 33456 99999999999999999999854
No 205
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.32 E-value=0.00017 Score=60.04 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..+...+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 30 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 69 (226)
T cd03248 30 LQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGG 69 (226)
T ss_pred ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 333333344556 9999999999999999999987533333
No 206
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.32 E-value=5.3e-05 Score=64.67 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 20 LHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence 444444445566 99999999999999999999876
No 207
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.32 E-value=7e-05 Score=62.47 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 23 LNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCcc
Confidence 333333344555 99999999999999999999876
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.31 E-value=5.5e-05 Score=64.11 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
++++...+..++ +++|+|+||+|||||++.|.+.
T Consensus 23 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 23 LKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCC
Confidence 444444445566 9999999999999999999984
No 209
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00017 Score=61.11 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.6
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+..++ +++|+|+||+|||||++.|.+-
T Consensus 25 ~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 25 EIEEKS--VVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEeCCC--EEEEECCCCCCHHHHHHHHhhh
Confidence 344556 9999999999999999999863
No 210
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00028 Score=60.50 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|.+..
T Consensus 31 ~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 31 NIPKGQ--WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 344556 99999999999999999999875
No 211
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00016 Score=62.27 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=28.4
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++...+..++ +++|+|+||+|||||++.+.+-..+..+
T Consensus 23 ~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (274)
T PRK13647 23 GLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRG 60 (274)
T ss_pred eEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 3333344566 9999999999999999999987533333
No 212
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00015 Score=59.52 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+..
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGE--MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCc--EEEEECCCCCCHHHHHHHhcccC
Confidence 34455 99999999999999999999875
No 213
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00016 Score=62.47 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 30 i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 30 IPRGS--WTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhccc
Confidence 34456 99999999999999999999875
No 214
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.31 E-value=5.6e-05 Score=71.50 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
.++++...+..++ +++|+|+||+|||||++.|.+...+..+.
T Consensus 22 il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~ 63 (556)
T PRK11819 22 ILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGE 63 (556)
T ss_pred eeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3444444455566 99999999999999999999976344443
No 215
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=6e-05 Score=63.87 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 20 VKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred eccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 444444445566 99999999999999999999864
No 216
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00017 Score=63.82 Aligned_cols=35 Identities=37% Similarity=0.388 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+...+.+++ .++++||+|||||||++.|.+-.
T Consensus 19 l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 19 LKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455566 99999999999999999999865
No 217
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.29 E-value=0.00029 Score=61.54 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.1
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.+.+...+..+
T Consensus 25 i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 25 AQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred EeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34455 9999999999999999999987533333
No 218
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00019 Score=62.07 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=27.0
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 29 ~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G 62 (279)
T PRK13635 29 SVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 (279)
T ss_pred EEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 344556 9999999999999999999987633444
No 219
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=5.8e-05 Score=64.09 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
++++...+..++ +++|+|+||+|||||++.|.+-
T Consensus 22 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 22 LYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence 333333344556 9999999999999999999864
No 220
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.28 E-value=0.00031 Score=65.97 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=39.5
Q ss_pred cceecHHHHHHHHHHhc------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|.++.++.++..|. +...+++.++||.|+||||||+.|.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46999999999999883 3456799999999999999999999866
No 221
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0002 Score=61.48 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...+..++ +++|+|++|+|||||++.|++..
T Consensus 26 ~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 26 KNVSFEINEGE--YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 33333344556 99999999999999999999876
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=6.1e-05 Score=63.85 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+..++ +++|+|+||+|||||++.|.+-
T Consensus 27 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 27 DFNQNE--ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcc
Confidence 344556 9999999999999999999874
No 223
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=5.8e-05 Score=64.35 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|.+-.
T Consensus 29 ~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 29 DIYRNK--VTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 344456 99999999999999999999865
No 224
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00015 Score=59.95 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=45.9
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCC--CCCCEEEEEE----eCCCCCHHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP--TNFNYVIWVV----MSKDSRLENIQETI 236 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~--~~Fd~~~wV~----vs~~~~~~~i~~~I 236 (238)
...||....++++.--+..+. |.+++||.|||||||++.+..-. +.- -..+-.++.. .+...|+.++-+.|
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred eEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 345787777777766666666 99999999999999999987533 111 1233444442 33455666665544
No 225
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00021 Score=61.89 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.0
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
-+..++ +++|+|+||+|||||++.|++......+
T Consensus 29 ~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G 62 (286)
T PRK13646 29 EFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTG 62 (286)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 344556 9999999999999999999987633334
No 226
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.0002 Score=61.44 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.+++..
T Consensus 36 l~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 36 IKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 333333344556 99999999999999999999865
No 227
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.0002 Score=61.40 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=24.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 41 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 41 DIPEKT--VTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 344556 99999999999999999999865
No 228
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0002 Score=61.78 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 27 i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 27 APRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 34456 9999999999999999999987533334
No 229
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.27 E-value=0.00045 Score=62.87 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
--||+|+|+||+||||+++.+.+...+..+.
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 3499999999999999999999877455554
No 230
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.27 E-value=7.1e-05 Score=61.36 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
++++...+..++ +++|+|++|+|||||++.+.+.
T Consensus 16 l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 16 LKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeccceEECCCc--EEEEECCCCCCHHHHHHHHhCC
Confidence 334444445566 9999999999999999999986
No 231
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.27 E-value=0.00043 Score=56.09 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+-+...+..+. .+.|+|++|+|||||++.+.+..
T Consensus 15 ~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 15 AAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 333444444555 89999999999999999998765
No 232
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.27 E-value=0.00021 Score=61.18 Aligned_cols=35 Identities=34% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 27 l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 27 LTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred eeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445566 99999999999999999999875
No 233
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=5.6e-05 Score=63.92 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=26.0
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 20 ~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 20 DINMQIEQNK--ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3333344556 99999999999999999999854
No 234
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=7.1e-05 Score=63.45 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.7
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|.+..
T Consensus 26 ~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 26 PIYENK--ITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 344556 99999999999999999999854
No 235
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00016 Score=59.25 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++.....+++ +.||.|+||.||||+++.|+.-..+..+
T Consensus 17 AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G 57 (245)
T COG4555 17 AVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSG 57 (245)
T ss_pred hhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCc
Confidence 3444444444556 9999999999999999999987644433
No 236
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=9.9e-05 Score=59.69 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..+...+..++ .+-|.|+||+|||||++.|.+-.++..+
T Consensus 17 lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G 57 (209)
T COG4133 17 LFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAG 57 (209)
T ss_pred eecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCC
Confidence 3444555555667 8999999999999999999987644433
No 237
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.00022 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+.|+|++|+|||||++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 479999999999999999999876
No 238
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.26 E-value=0.0029 Score=61.47 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++++.--+..++ +|+|+|.+|+|||||+|++.+-.
T Consensus 487 ~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 487 PVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred chhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 35555555566677 99999999999999999998865
No 239
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.26 E-value=7e-05 Score=70.21 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|++..
T Consensus 16 l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 16 LKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence 344444445566 99999999999999999999963
No 240
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=6.3e-05 Score=64.88 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=30.9
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++....++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 31 ~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred ECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccC
Confidence 443334455555555667 99999999999999999999865
No 241
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0002 Score=63.70 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.+.+-.
T Consensus 28 i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 28 IPAGE--IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 242
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.25 E-value=0.0018 Score=59.73 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+..+...|..++ .++|+||.|+|||||+|.+.+--
T Consensus 350 pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 350 PILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cceecceeEecCCc--eEEEECCCCccHHHHHHHHHccc
Confidence 45666777777788 99999999999999999998754
No 243
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00023 Score=62.41 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=28.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++...+..++ +++|+|+||+|||||++.|++-..+..+
T Consensus 25 ~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G 62 (305)
T PRK13651 25 NVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTG 62 (305)
T ss_pred eeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3333344566 9999999999999999999987633333
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=7.2e-05 Score=63.90 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 23 l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 23 LEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred eeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence 344444445566 99999999999999999999876
No 245
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.25 E-value=7.1e-05 Score=69.87 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.+++...+..+
T Consensus 20 l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G 59 (501)
T PRK10762 20 LSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAG 59 (501)
T ss_pred eeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 344444444556 9999999999999999999987533333
No 246
>PRK13409 putative ATPase RIL; Provisional
Probab=97.25 E-value=0.00024 Score=67.71 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=33.2
Q ss_pred eecH-HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC
Q 046124 166 VGLQ-LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF 215 (238)
Q Consensus 166 vG~~-~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F 215 (238)
||.. -.+..+- .+..++ +++|+|+||+|||||++.+.+...+..+.+
T Consensus 83 yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 83 YGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred ecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 5532 1344443 345566 999999999999999999999764445553
No 247
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00022 Score=62.01 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=26.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 30 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (290)
T PRK13634 30 IPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSG 62 (290)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 34556 9999999999999999999987633333
No 248
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=9.7e-05 Score=61.93 Aligned_cols=40 Identities=30% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++.+...+..++ +++|+|++|+|||||++.+.+......+
T Consensus 16 l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 16 LDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred eccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 333333444556 9999999999999999999997633333
No 249
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=8.2e-05 Score=69.91 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=32.4
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+|....++++...+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 329 ~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G 374 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSG 374 (530)
T ss_pred eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 343334444444445566 9999999999999999999987533334
No 250
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.24 E-value=0.00023 Score=59.44 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ .++|+||.|+|||||+..+..-.
T Consensus 27 ~i~~Ge--~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 27 EIEAGE--FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 344566 99999999999999999998755
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.24 E-value=0.00027 Score=58.08 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|++|+|||||++.|.+......+
T Consensus 24 l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 24 LKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred ccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 333333344556 9999999999999999999986533333
No 252
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.23 E-value=0.00025 Score=58.16 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
++...+..++ +++|+|++|+|||||++.+.+......+.
T Consensus 23 ~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~ 61 (204)
T cd03250 23 DINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGS 61 (204)
T ss_pred eeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCe
Confidence 3333344566 99999999999999999999976344443
No 253
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.23 E-value=0.00025 Score=59.66 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+..
T Consensus 23 i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 23 VPTGS--LVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 34456 99999999999999999999875
No 254
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00025 Score=61.51 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=26.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|++|+|||||++.|++...+..+
T Consensus 29 i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G 61 (288)
T PRK13643 29 VKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEG 61 (288)
T ss_pred EcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 34556 9999999999999999999987633333
No 255
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=6.8e-05 Score=63.92 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 28 l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 28 LKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 333333344556 99999999999999999999854
No 256
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.23 E-value=0.00023 Score=60.52 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 26 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 26 LQRGR--VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999875
No 257
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00024 Score=61.63 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
++++...+..++ +++|+|+||+|||||++.|.+.
T Consensus 55 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 55 VKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcc
Confidence 333433444556 9999999999999999999984
No 258
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=4.7e-05 Score=65.15 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 31 vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 31 ALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence 3444444445566 99999999999999999999864
No 259
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.21 E-value=0.0001 Score=69.73 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
.++++...+..++ +++|+|+||+|||||++.|++...+..+.
T Consensus 20 il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~ 61 (552)
T TIGR03719 20 ILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGE 61 (552)
T ss_pred eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3444444455566 99999999999999999999976344443
No 260
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00024 Score=61.49 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|+||+|||||++.|++-..+..+
T Consensus 22 l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G 61 (283)
T PRK13636 22 LKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSG 61 (283)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence 334444445566 9999999999999999999987633334
No 261
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.21 E-value=0.00025 Score=60.90 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++...+..++ +++|+|+||+|||||++.|++......+
T Consensus 29 ~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG 67 (268)
T PRK10419 29 NNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQG 67 (268)
T ss_pred eceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 33334444566 9999999999999999999987533333
No 262
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=5.8e-05 Score=66.05 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+...+..++ +++|+|++|+|||||++.|++..
T Consensus 61 L~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 61 LKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 333333344556 99999999999999999999864
No 263
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.21 E-value=0.00077 Score=51.81 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...|..+. +|.+.|.-|+|||||++.+....
T Consensus 13 ~~l~~~l~~~~--~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 13 KAFAKPLDFGT--VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHhCCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 33444454556 99999999999999999999876
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00026 Score=59.95 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.6
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|.+..
T Consensus 27 ~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 27 DIYKRE--VTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 344556 99999999999999999998764
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.20 E-value=7.7e-05 Score=69.82 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|++..
T Consensus 27 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 27 LKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 444444444566 99999999999999999999875
No 266
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.20 E-value=0.00029 Score=61.09 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=26.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|+||+|||||++.|++...+..+
T Consensus 60 i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G 92 (282)
T cd03291 60 IEKGE--MLAITGSTGSGKTSLLMLILGELEPSEG 92 (282)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34455 9999999999999999999997633444
No 267
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.20 E-value=7.9e-05 Score=69.49 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 17 l~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 17 LDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred ecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445566 99999999999999999999865
No 268
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=4.2e-05 Score=65.40 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=30.7
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|....++.+...+..++ +++|+|++|+|||||++.|.+..
T Consensus 18 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred eCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHccc
Confidence 444334445544455566 99999999999999999998765
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.19 E-value=8.1e-05 Score=69.60 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 20 il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 20 ALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCc
Confidence 3444444455566 99999999999999999999865
No 270
>PLN03073 ABC transporter F family; Provisional
Probab=97.19 E-value=5.8e-05 Score=73.39 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=29.8
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
||....++++...+..++ +++|+|+||+|||||++.|.+.
T Consensus 187 y~~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 187 VGGRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred eCCCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence 443334444444455566 9999999999999999999974
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=8.4e-05 Score=69.46 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 20 ALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444455566 99999999999999999999866
No 272
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=8.5e-05 Score=63.41 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=30.5
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|....+.++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 20 INDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred cCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 343334444444455566 99999999999999999999875
No 273
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0003 Score=55.26 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=22.0
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999999866
No 274
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0013 Score=60.65 Aligned_cols=163 Identities=14% Similarity=0.028 Sum_probs=79.6
Q ss_pred cCccceeecccc------cc-cccchhHH-----hhhhHhhHhhHHHHHHHHHhhhhchHHHH-HHHHHHHHHHHHHHHH
Q 046124 31 LNATFYIYQPEN------TV-RICRNILQ-----ISIDGAIFNRCLDCFLGKAASIRNLQKNV-VALETELGKLIEAKND 97 (238)
Q Consensus 31 ~~~~~~~~~~~~------~~-~~~g~~~~-----~~l~~v~~~~l~~~~~~e~~~~~~~~~~~-~~L~~el~~l~~~l~d 97 (238)
|--|+++.|-++ -. .+...++. ..+|.| |+.|+.+-..++.++.|..+.+ +...+.....+..
T Consensus 222 LDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V-~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qre--- 297 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTV-CTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQRE--- 297 (582)
T ss_pred ecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHH-HHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhh---
Confidence 445777777333 11 22233433 345666 7777777777886665544444 4443333222211
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHH------HHHHHHHHHHHHh------cC--Ccccccc-cCCCCCCCCCCCC
Q 046124 98 VVARVVNAERQQTMTRLNKVQGWLSRFGKK------VAKKLRDAGTLMA------NG--AFEVVAE-RAPESVADERPIE 162 (238)
Q Consensus 98 ~~~~~~~a~~k~~~~~~~~~~~Wl~~~~~~------~~~~i~~i~~~~~------~~--~~~~~~~-~~~~~~~~~~~~~ 162 (238)
.+.+. .....++.++.+|++. +..+|+.+..+-. +. .|.++.. ...+++.......
T Consensus 298 -------fe~q~--~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V 368 (582)
T KOG0062|consen 298 -------FEVQM--KYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV 368 (582)
T ss_pred -------cchHH--HHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEee
Confidence 12222 4456788888887643 4444444433211 11 2333331 1111111111000
Q ss_pred CcceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-++-.+ . .+...+.. +-..+|++||.+|.||||+.|.+.++.
T Consensus 369 ~f~y~p~~-y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l 414 (582)
T KOG0062|consen 369 AFEYTPSE-Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL 414 (582)
T ss_pred eccCCCcc-h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccC
Confidence 00011111 1 22222222 233589999999999999999999977
No 275
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.18 E-value=0.00073 Score=57.74 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=31.7
Q ss_pred cceecHHHHHHHHH---Hhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWR---CLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~---~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..++.+.. ++. .....-+-++|++|+||||+|+.+.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46787766655543 321 1234567899999999999999998754
No 276
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.18 E-value=0.00026 Score=60.03 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.6
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.+.+-.
T Consensus 20 ~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGE--ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence 3455 99999999999999999999865
No 277
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00035 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|-++|++|+|||||++.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998554
No 278
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00031 Score=61.92 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ +++|+|++|+|||||++.|++-..+..+
T Consensus 41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G 81 (320)
T PRK13631 41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYG 81 (320)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 3444444445566 9999999999999999999987633333
No 279
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.17 E-value=0.00029 Score=62.72 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|++-.
T Consensus 27 ~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 27 HVPAGQ--IYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 344456 99999999999999999999876
No 280
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.17 E-value=0.00031 Score=62.77 Aligned_cols=27 Identities=33% Similarity=0.617 Sum_probs=23.8
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|.+..
T Consensus 21 ~~Ge--i~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 21 PGQG--VTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3445 99999999999999999999875
No 281
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.16 E-value=0.00034 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.741 Sum_probs=19.5
Q ss_pred EEEEecCCCchhHHHHHHHhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~ 207 (238)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998876
No 282
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00031 Score=59.41 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=23.8
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 26 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 26 IPKNS--VTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence 34456 99999999999999999999753
No 283
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00031 Score=62.72 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+..
T Consensus 23 ~Ge--~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 23 AQG--ITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 455 99999999999999999999875
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.00015 Score=57.86 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++...+..++ .|+|.||.|+|||||.|.|++-.....+
T Consensus 20 ~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 20 NNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred cceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence 33334444566 8999999999999999999986533333
No 285
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00031 Score=59.01 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|++|+|||||++.+.+......+
T Consensus 22 i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G 54 (235)
T cd03299 22 VERGD--YFVILGPTGSGKSVLLETIAGFIKPDSG 54 (235)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 33455 9999999999999999999987533344
No 286
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00015 Score=67.86 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=24.1
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 286 i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 286 VCRGE--ILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred EcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 33455 99999999999999999999865
No 287
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00033 Score=62.98 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 26 i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 26 IHEGE--FVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 34455 99999999999999999999875
No 288
>PRK06762 hypothetical protein; Provisional
Probab=97.15 E-value=0.00037 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998765
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.14 E-value=0.00031 Score=57.33 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 25 l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 25 LKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred eecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 334434444556 99999999999999999999865
No 290
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.00011 Score=62.21 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=24.8
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|.+..
T Consensus 26 ~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 26 DFPERQ--ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 344556 99999999999999999999865
No 291
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.14 E-value=0.00031 Score=57.63 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+++|+|+||+|||||++.++.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999854
No 292
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.14 E-value=0.00031 Score=58.32 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.+++|+|+||+|||||.+.|.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999986
No 293
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.14 E-value=0.00029 Score=59.29 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.+.+|+|+||+|||||++.|+
T Consensus 24 ~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 294
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.14 E-value=0.00034 Score=57.53 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.|+||+|||||++.|....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 599999999999999999997543
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0001 Score=68.55 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.+++..
T Consensus 14 l~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 14 LDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence 344444445566 99999999999999999999875
No 296
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.13 E-value=0.00036 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998863
No 297
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00032 Score=62.01 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 23 l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 23 VDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCC
Confidence 333334445566 99999999999999999999865
No 298
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00035 Score=60.03 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 40 il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 40 ALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 3444444445566 99999999999999999998864
No 299
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00034 Score=61.93 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 23 l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 23 VDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccC
Confidence 333333445566 99999999999999999999865
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00015 Score=67.81 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|++..
T Consensus 278 l~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 278 VDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred ccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCC
Confidence 444444444566 99999999999999999999865
No 301
>PF13173 AAA_14: AAA domain
Probab=97.12 E-value=0.00061 Score=51.74 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=29.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCC
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKD 226 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~ 226 (238)
.++.|.|+-|+|||||++.++.+. . .....+++.....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCH
Confidence 589999999999999999999876 2 3345666655443
No 302
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00029 Score=65.57 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|++..
T Consensus 271 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 271 LHKGE--ILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EeCCc--EEEEecCCCCCHHHHHHHHcCCC
Confidence 33455 99999999999999999999865
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00023 Score=66.44 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=23.8
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.+++..
T Consensus 277 ~~Ge--~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 277 RAGE--IVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred eCCc--EEEEEcCCCCCHHHHHHHHcCCC
Confidence 3445 99999999999999999999865
No 304
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0001 Score=65.77 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+...+..++ +++|+|++|+|||||++.|.+-.....+
T Consensus 25 isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G 61 (351)
T PRK11432 25 LNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEG 61 (351)
T ss_pred eEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 333344456 9999999999999999999987633333
No 305
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0004 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.5
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+..
T Consensus 33 i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 33 VKKGE--FLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 99999999999999999999876
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.11 E-value=0.00011 Score=68.24 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|++..
T Consensus 276 l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~ 310 (490)
T PRK10938 276 LHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDH 310 (490)
T ss_pred EeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCC
Confidence 333433344456 99999999999999999999864
No 307
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00041 Score=59.84 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=26.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|++|+|||||++.|.+......+
T Consensus 30 i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G 62 (277)
T PRK13642 30 ITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEG 62 (277)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 44556 9999999999999999999987633333
No 308
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.10 E-value=0.00039 Score=62.18 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=26.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|++|+|||||++.|.+-.....+
T Consensus 25 i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G 57 (353)
T PRK10851 25 IPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSG 57 (353)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 33456 9999999999999999999997633333
No 309
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.10 E-value=0.00042 Score=57.54 Aligned_cols=32 Identities=41% Similarity=0.354 Sum_probs=25.9
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+..++ +++|+|++|+|||||++.|.+..
T Consensus 24 vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 24 INLEINPGE--IVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 333344556 99999999999999999999865
No 310
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00037 Score=60.37 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 54 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 54 ALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred eEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 3444444445566 99999999999999999999864
No 311
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00011 Score=61.46 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=31.1
Q ss_pred ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
|....++++..-+..++ .|+|+|+.|+|||||++.|.+-.
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhccc
Confidence 44444555555566677 99999999999999999998854
No 312
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.09 E-value=0.00046 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|.|+|..|+|||||++.+.+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999765
No 313
>PRK04195 replication factor C large subunit; Provisional
Probab=97.09 E-value=0.00045 Score=64.31 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcC---C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG---E-SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~---~-~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..|+.. + ....+-|+|+.|+||||||+.++++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999888864 2 25689999999999999999999976
No 314
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.09 E-value=0.00043 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEecCCCchhHHHHHHHhhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~~ 208 (238)
|-|+|+.|+|||||++.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999976
No 315
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00015 Score=61.33 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=32.0
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.||....++++..-+.+++ .+.++|+.||||||++|+|..-.
T Consensus 9 k~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 9 KRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred hhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhccc
Confidence 33454445555555555666 99999999999999999998765
No 316
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00025 Score=59.09 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++.+.-.+..++ +-+|.||||+|||||++.|.+++
T Consensus 18 eILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 44444444555667 89999999999999999999876
No 317
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00043 Score=62.00 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 27 i~~Ge--~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGE--FIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHHCCC
Confidence 34455 99999999999999999999875
No 318
>PRK07667 uridine kinase; Provisional
Probab=97.07 E-value=0.00082 Score=54.84 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=28.3
Q ss_pred HHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+.+.+.. +...+|+|-|+.|+|||||++.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555543 355799999999999999999998865
No 319
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.07 E-value=0.0004 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+.+|+|+||+|||||++.|+.-
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 320
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00013 Score=68.13 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|.+..
T Consensus 20 l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 20 LDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445566 99999999999999999999875
No 321
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.07 E-value=0.00016 Score=60.59 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=36.6
Q ss_pred ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
-+|.....+++...+..++ +.+|+|+.|+|||||+|.|.+...+.++
T Consensus 17 ~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~G 63 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKG 63 (263)
T ss_pred ecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCC
Confidence 3566666666666666777 9999999999999999999987644433
No 322
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.07 E-value=0.0004 Score=62.08 Aligned_cols=27 Identities=41% Similarity=0.441 Sum_probs=24.0
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|++|+|||||++.|.+-.
T Consensus 28 ~~Ge--~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 28 KKGE--FVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHHCCC
Confidence 3455 99999999999999999999976
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.00058 Score=63.84 Aligned_cols=46 Identities=28% Similarity=0.226 Sum_probs=39.2
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999998887754 356999999999999999998876
No 324
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.06 E-value=0.00051 Score=58.51 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=26.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+..++ +++|+|++|+|||||++.|++......+
T Consensus 44 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 76 (257)
T cd03288 44 IKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDG 76 (257)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence 34456 9999999999999999999987533333
No 325
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00042 Score=61.30 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 33 ~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 33 GVSFTLERGK--TLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCC
Confidence 3333344556 99999999999999999999875
No 326
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.06 E-value=0.00038 Score=57.61 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.+++|+|+||+|||||++.|.
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHhe
Confidence 389999999999999999986
No 327
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.05 E-value=0.00019 Score=66.92 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.+++..
T Consensus 275 ~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 275 RVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred ccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCC
Confidence 3444444445566 99999999999999999999875
No 328
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.05 E-value=9.5e-05 Score=66.30 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.8
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhc
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFL 209 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~ 209 (238)
+..++ +++|+|++|+|||||++.|++...
T Consensus 16 i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 16 IAKGE--IFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred EcCCC--EEEEECCCCChHHHHHHHHhCCCC
Confidence 33456 999999999999999999998763
No 329
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00045 Score=62.76 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++ +++|+|++|+|||||++.|.+-..+..+
T Consensus 53 ~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 53 EGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred CCC--EEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 345 9999999999999999999986533333
No 330
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.04 E-value=0.00017 Score=67.70 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.+++-.
T Consensus 301 il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 301 VVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcC
Confidence 3455555555566 99999999999999999999865
No 331
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.04 E-value=0.00041 Score=65.22 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|+||+|||||++.|.+-.
T Consensus 24 ~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 24 VVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence 3444444455567 99999999999999999999876
No 332
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.04 E-value=0.00011 Score=66.83 Aligned_cols=29 Identities=48% Similarity=0.713 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||+|.|.+..
T Consensus 25 ~i~~Ge--iv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 25 SVREGS--LVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EECCCC--EEEEECCCCchHHHHHHHHhcCC
Confidence 344556 99999999999999999999865
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.04 E-value=0.00039 Score=65.09 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|++..
T Consensus 288 ~Ge--~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 288 AGE--ILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHcCCC
Confidence 345 99999999999999999999865
No 334
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.03 E-value=0.00054 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
..++|+|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 489999999999999999976
No 335
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.00084 Score=62.26 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=38.6
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+.....|...+..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999888888888877765 457899999999999999998765
No 336
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.02 E-value=0.00096 Score=59.24 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=37.5
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..+..++-.+.+....-+.|.|++|+|||||++.+.+-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999888777777555568899999999999999997654
No 337
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.02 E-value=0.00048 Score=61.06 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 44 i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 44 LYEGE--TLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHHCCC
Confidence 44456 99999999999999999999866
No 338
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.00039 Score=56.47 Aligned_cols=42 Identities=29% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
..+.++...+..++ .+-++|+.|+|||||+|+||....+..+
T Consensus 16 ~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G 57 (223)
T COG2884 16 EALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRG 57 (223)
T ss_pred hhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCc
Confidence 35566666666667 8999999999999999999998744433
No 339
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.02 E-value=0.00082 Score=58.79 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=39.0
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++..+.. ..+-++|+.|+||||||+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4678999999999999987654 566668999999999999999865
No 340
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.02 E-value=0.001 Score=57.69 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++...+..+|.|+|++|+|||||++.+.+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444578899999999999999999999876
No 341
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0027 Score=53.01 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
-.++.|+|++|+|||||+..++-.. ...+ .-..++|++....++..++.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 3599999999999999999987433 1111 235789998888777665543
No 342
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.01 E-value=0.00047 Score=64.39 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=23.7
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|++..
T Consensus 276 ~~Ge--~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 276 RKGE--ILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred cCCc--EEEEecCCCCCHHHHHHHHhCCC
Confidence 3445 99999999999999999999865
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=96.99 E-value=0.0005 Score=65.53 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.5
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++|+|+||+|||||++.|.+...+..+.
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~ 395 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 99999999999999999999876334443
No 344
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.99 E-value=0.0012 Score=61.05 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=41.5
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCC
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFN 216 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd 216 (238)
..++|+++.++.+...+..+. -|-|.|++|+||||||+.+.... ...+.|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~-~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF-QNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh-cccCcce
Confidence 466899999999988887776 69999999999999999999865 3333454
No 345
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.99 E-value=0.00079 Score=65.48 Aligned_cols=46 Identities=39% Similarity=0.506 Sum_probs=36.8
Q ss_pred CcceecHHHHH---HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLE---HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~---~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+.... .+...+..+...-+-++|++|+||||||+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35688887764 45566666776678899999999999999999865
No 346
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0029 Score=55.49 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=51.7
Q ss_pred cceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhhc---cCCCCCCEEEEEE-eCCCCCHHHHH
Q 046124 164 TVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKFL---ESPTNFNYVIWVV-MSKDSRLENIQ 233 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~~---~v~~~Fd~~~wV~-vs~~~~~~~i~ 233 (238)
+++|.+...+.+...+..+.. ...-++|+.|+||||||+.++.... ....|.|...|.. -++...+..|.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir 79 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR 79 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH
Confidence 568999999999999987643 4668999999999999998887541 2345778777766 34555555543
No 347
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0012 Score=55.33 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++..+..++...|.|.|++|+||||||..|.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666689999999999999999998764
No 348
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.012 Score=56.50 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=38.9
Q ss_pred CCcceecHHHHHHHHHHhc----CC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 162 EPTVVGLQLQLEHVWRCLE----GE--SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~----~~--~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+-||.++.++.++++|- .+ +-.++.++||+|+|||.+++.|..-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 3455999999999988773 11 45699999999999999999999866
No 349
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.98 E-value=0.00054 Score=56.46 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHHHH
Q 046124 186 IVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~ 205 (238)
+++|+|+||+|||||+..|+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999994
No 350
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.0023 Score=48.95 Aligned_cols=41 Identities=34% Similarity=0.370 Sum_probs=30.6
Q ss_pred EEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHH
Q 046124 187 VGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQ 233 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~ 233 (238)
|-++|+.|+|||+|++.++... . ....-+.+++..+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~-----~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-G-----RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-T-----CEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-h-----cceEEEEeccccccccce
Confidence 5689999999999999999865 1 133446778877777764
No 351
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.97 E-value=0.00051 Score=64.41 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|+||+|||||++.|++-.
T Consensus 300 l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 300 VDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 334433444556 99999999999999999999875
No 352
>CHL00181 cbbX CbbX; Provisional
Probab=96.97 E-value=0.0015 Score=56.80 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+-++|++|+||||+|+.+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999997754
No 353
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.96 E-value=0.00054 Score=60.69 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|.+|+|||||++.|.+-.
T Consensus 32 l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 32 VNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCC
Confidence 333334444566 99999999999999999999866
No 354
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.96 E-value=0.00057 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.96 E-value=0.00027 Score=60.26 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=27.5
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++...+..++ ++||||.+|+|||||++.|.+-.
T Consensus 30 d~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 30 DGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCc
Confidence 33444455567 99999999999999999999866
No 356
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.95 E-value=0.00069 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+++|+|+.|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 35699999999999999999998766
No 357
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.95 E-value=0.0012 Score=55.85 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
-+++|+|+.|+|||||++.+.... .+.|+++.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 379999999999999999998755 578888877754
No 358
>PRK09183 transposase/IS protein; Provisional
Probab=96.94 E-value=0.015 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+.|+|++|+||||||..+.+..
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 359
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.94 E-value=0.0006 Score=61.48 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=24.9
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|++|+|||||++.|.+-.
T Consensus 36 ~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 36 TINNGE--FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEeCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 334456 99999999999999999999866
No 360
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.00073 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.++|+.|+||||+++.+++..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999998876
No 361
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00065 Score=65.21 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++..-+..++ +++|+|+||+|||||++.|++..
T Consensus 31 ~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 31 AVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred EEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCC
Confidence 3444444455566 99999999999999999999875
No 362
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.93 E-value=0.001 Score=65.90 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=38.9
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|++.+++.++..|......-+-++|++|+|||++|+.+....
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999987644456799999999999999998765
No 363
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.93 E-value=0.0028 Score=56.88 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE-EEEEEeCCCC-CHHHHHHHHh
Q 046124 171 QLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY-VIWVVMSKDS-RLENIQETIG 237 (238)
Q Consensus 171 ~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~-~~wV~vs~~~-~~~~i~~~Il 237 (238)
....+++.+.. +.-.++.|+|+.|+|||||++.+.+.. .. ++=+. ++|+.+.+.. ++.++.+.+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~~-~~~dv~~vv~lIgER~~EV~df~~~i~ 186 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-AA-NHPEVHLMVLLIDERPEEVTDMRRSVK 186 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceEEEEEecCCCCCHHHHHHHHh
Confidence 34457777764 333489999999999999999998866 22 12233 5787777665 5567766653
No 364
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.92 E-value=0.00065 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4567999999999999999999985
No 365
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.92 E-value=0.00069 Score=58.49 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|++-.
T Consensus 20 l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 20 LENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred eeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhc
Confidence 333444445566 99999999999999999999876
No 366
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.92 E-value=0.00092 Score=55.09 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.1
Q ss_pred HHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...++++|+++|+.|+|||||++.+....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445688999999999999999999998765
No 367
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.92 E-value=0.00035 Score=65.61 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
.++++...+..++ .++|+|+.|+|||||++.+.+-..+.++.
T Consensus 350 vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 350 VLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3444444455566 99999999999999999999876344443
No 368
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.91 E-value=0.00072 Score=55.42 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
+++.|.|+||+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999999999999999987
No 369
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.90 E-value=0.0011 Score=65.67 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=39.7
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..+..++..|......-+-++|++|+|||||++.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999887655567799999999999999998865
No 370
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.90 E-value=0.00068 Score=60.83 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=24.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 28 i~~Ge--~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 28 IEAGE--LLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 99999999999999999999865
No 371
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.90 E-value=0.00066 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++|.++|+.|+|||||++.+.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999998865
No 372
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00068 Score=65.05 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=24.5
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..++ +++|+|+||+|||||++.|++-.
T Consensus 346 ~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 346 DLWPGE--TLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred EEcCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence 333455 99999999999999999999865
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.89 E-value=0.0012 Score=64.51 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=39.5
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.++..|......-+-++|++|+|||||++.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999998877655567799999999999999998865
No 374
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.89 E-value=0.00073 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchhHHHHHHHh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.+++|+|+||+|||||++.|..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5999999999999999999983
No 375
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.00091 Score=55.50 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=24.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+.+|||-|.+|+||||+++.|+..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999887
No 376
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.00071 Score=61.02 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 42 i~~Ge--~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 42 IYKGE--IFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EcCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 34455 99999999999999999999865
No 377
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.88 E-value=0.00096 Score=51.76 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=26.8
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK 225 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~ 225 (238)
.+|+|+|+.|+|||||++.+.+.. . ...+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 389999999999999999999987 2 23344444444433
No 378
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.88 E-value=0.0012 Score=59.26 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=35.6
Q ss_pred cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|.+..++.+...+.. ..+.-+-++|++|+||||||+.+++..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 467888888888776531 124468999999999999999999865
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.87 E-value=0.0016 Score=51.65 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|..+|.+ + ++.++|+.|+|||||++.+.++.
T Consensus 25 g~~~l~~~l~~-k--~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG-K--TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT-S--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC-C--EEEEECCCCCCHHHHHHHHHhhc
Confidence 46677777766 4 89999999999999999999863
No 380
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0014 Score=58.75 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=39.0
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+...+..+.. ..+-++|+.|+||||||+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4678999999999988877643 467899999999999999998765
No 381
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.87 E-value=0.0017 Score=54.69 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=32.6
Q ss_pred Cccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++| ....+..+-.+........+-|+|+.|+|||+|++.+++..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34445 33345555555444445689999999999999999999876
No 382
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.00068 Score=55.45 Aligned_cols=36 Identities=36% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++.--+..++ .+.++|+.|||||||++.+.+-.
T Consensus 20 ~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 20 ALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCc
Confidence 3444444455667 89999999999999999998754
No 383
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.86 E-value=0.00089 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..|.|+|++|+|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999999754
No 384
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.85 E-value=7.7e-05 Score=62.54 Aligned_cols=44 Identities=34% Similarity=0.391 Sum_probs=30.3
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES 211 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v 211 (238)
+|.=...+++..-+..++ +++++||||.|||||.+.|-+-..+.
T Consensus 14 FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~ 57 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPS 57 (250)
T ss_pred cCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCC
Confidence 333333344444444556 99999999999999999998765333
No 385
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.84 E-value=0.00087 Score=51.70 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999864
No 386
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.83 E-value=0.0011 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.|+|+|+.|+|||||.+.+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999984
No 387
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.83 E-value=0.0012 Score=43.88 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHh
Q 046124 186 IVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~ 206 (238)
+..|.|++|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987653
No 388
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.82 E-value=0.0008 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEecCCCchhHHHHHHHhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~ 207 (238)
|+|+|++|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999886
No 389
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.82 E-value=0.0013 Score=59.68 Aligned_cols=45 Identities=33% Similarity=0.386 Sum_probs=35.6
Q ss_pred cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++++...+.. ..++-|-++|++|+|||+||+.+++..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 456888888888776531 234568999999999999999999866
No 390
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0014 Score=60.67 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=39.6
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+.....|..++..+... .+-++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999887643 57899999999999999998765
No 391
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00094 Score=61.80 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++++...+..++ .|+|+|..|+|||||++.+.+..
T Consensus 352 ~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 352 KALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred chhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhcc
Confidence 36777777777788 99999999999999999999754
No 392
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.81 E-value=0.00049 Score=55.70 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCC
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESP 212 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~ 212 (238)
.+...|..++ .++|+|-||+||+||||.+.+-..+..
T Consensus 31 ~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTs 67 (267)
T COG4167 31 PVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred ceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCC
Confidence 3334455556 899999999999999999988664433
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.81 E-value=0.00087 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|+||+|||||+..|+.-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998533
No 394
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.81 E-value=0.00095 Score=62.45 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=27.0
Q ss_pred HhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 178 CLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 178 ~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+..++ +++|+|+||+|||||++.|.+...+..+
T Consensus 46 sI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sG 79 (549)
T PRK13545 46 EVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKG 79 (549)
T ss_pred EEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence 344556 9999999999999999999997633344
No 395
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.00092 Score=59.20 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.|++..
T Consensus 98 L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 98 LHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 334444444566 99999999999999999999865
No 396
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.80 E-value=0.0024 Score=48.40 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...|..++ +|.+.|.=|+|||||+|.+....
T Consensus 6 ~~l~~~l~~g~--vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 6 KKLAQILKPGD--VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHSS-E--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhCCCCC--EEEEECCCCCCHHHHHHHHHHHc
Confidence 44556666666 99999999999999999998876
No 397
>PRK08727 hypothetical protein; Validated
Probab=96.79 E-value=0.0021 Score=54.08 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.2
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeC
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMS 224 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs 224 (238)
..++|.......+.....+....-+.|+|+.|+|||+|++.+++.. ...+ ..++++++.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~~~~--~~~~y~~~~ 78 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-EQAG--RSSAYLPLQ 78 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-HHcC--CcEEEEeHH
Confidence 3444544444444444333333469999999999999999999876 2222 345566543
No 398
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0011 Score=54.13 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.8
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|+|++|+|||||++.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355699999999999999999998865
No 399
>PLN02796 D-glycerate 3-kinase
Probab=96.78 E-value=0.00098 Score=59.10 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+-+|+|.|+.|+|||||++.|.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.78 E-value=0.001 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEecCCCchhHHHHHHHhhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~~ 208 (238)
|.|+|++|+||||+++.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997653
No 401
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0043 Score=59.34 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++||.+..++.|...+..+.+. .+-++|+.|+||||||+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999887543 56889999999999999987765
No 402
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.0017 Score=64.49 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=39.6
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++.++..++..|......-+-++|++|+|||||++.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999987655567799999999999999998765
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0017 Score=59.29 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+++|++|+||||++..+.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999887753
No 404
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.005 Score=58.07 Aligned_cols=46 Identities=33% Similarity=0.351 Sum_probs=38.6
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+..|...+..+.. ..+-++|+.|+||||||+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999887654 347789999999999999998754
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.087 Score=47.62 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+++|++|+||||++..+....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998765
No 406
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.73 E-value=0.0011 Score=59.87 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+-.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~ 74 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 99999999999999999999876
No 407
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.73 E-value=0.00055 Score=57.29 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.0
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHH
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLL 201 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLa 201 (238)
+...+..++ +++|+|++|+|||||+
T Consensus 14 vsl~i~~Ge--~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 14 VDVDIPRNK--LVVITGVSGSGKSSLA 38 (226)
T ss_pred ceeecCCCc--EEEEEcCCCCCHHHHH
Confidence 333445566 9999999999999996
No 408
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.72 E-value=0.0013 Score=62.53 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE 210 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~ 210 (238)
.++++...+..++ .++|+|++|+|||||++.+.+...+
T Consensus 358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCC
Confidence 3444444455566 8999999999999999999987633
No 409
>PLN02165 adenylate isopentenyltransferase
Probab=96.72 E-value=0.0015 Score=57.75 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.5
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+....+|+|+||.|+|||||+..|....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44445599999999999999999998765
No 410
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.71 E-value=0.0027 Score=57.73 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=36.5
Q ss_pred CcceecHHHHHHHHHHhcCC--------------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGE--------------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.++.++.+.-.+... .++.|-++|+.|+||||||+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789888888876555431 24689999999999999999999876
No 411
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.71 E-value=0.0011 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|+|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988764
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0021 Score=58.48 Aligned_cols=50 Identities=36% Similarity=0.558 Sum_probs=37.1
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEE---EEEeCCCCCHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVI---WVVMSKDSRLENIQE 234 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~---wV~vs~~~~~~~i~~ 234 (238)
++-|+|||||.|||||+++|.+....+..+.|... -|.+..+..+..+++
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 57799999999999999999998767777777543 234555555555554
No 413
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.70 E-value=0.0019 Score=57.53 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++|.++.+..|+..+.+....-|-|.|+.|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999998888887766667799999999999999997655
No 414
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.69 E-value=0.0036 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-+-++|++|+||||+|+.+....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999998777654
No 415
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.69 E-value=0.0062 Score=52.11 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHH
Q 046124 169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENI 232 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i 232 (238)
...++.+...+..+. -|-+.|+.|+||||||+.+.... .. ..++++.+...+..++
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 345566666666554 56799999999999999998744 11 2344555555554444
No 416
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0064 Score=60.02 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=39.5
Q ss_pred CcceecHHHHHHHHHHhcCCcceE-EEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGI-VGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~v-I~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|...+..+.+.- +-++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467999999999999888775544 5899999999999999998876
No 417
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0022 Score=58.19 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=38.7
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.|..++..+... -+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999988877543 48899999999999999987765
No 418
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.007 Score=58.04 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=39.2
Q ss_pred CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.|..++..+. ...+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999998775 3577899999999999999987654
No 419
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.67 E-value=0.004 Score=51.07 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=35.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
-.++-|+|++|+|||||+..+..... ..-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 45999999999999999998876541 2346788988765 66555544
No 420
>PRK09087 hypothetical protein; Validated
Probab=96.67 E-value=0.0028 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.306 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+.|+|+.|+|||||++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3569999999999999999998654
No 421
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0068 Score=56.83 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=39.1
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.|..++..+... .+-++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999877544 57899999999999999987755
No 422
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.66 E-value=0.0017 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.++..|+|+||+||||++..|.-
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998753
No 423
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.66 E-value=0.0014 Score=63.54 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .++|+|++|+|||||++.+.+-..+..+
T Consensus 468 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 468 ILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4445544555566 9999999999999999999987633334
No 424
>PRK06893 DNA replication initiation factor; Validated
Probab=96.65 E-value=0.0046 Score=51.82 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeC
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMS 224 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs 224 (238)
...+-|+|+.|+|||+|++.+++.. ... ...+.+++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~--~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY-LLN--QRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHc--CCCeEEeeHH
Confidence 3468999999999999999999976 221 2234566553
No 425
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.65 E-value=0.0061 Score=50.54 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=35.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQ 233 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~ 233 (238)
-.++.|+|++|+|||||+..+.... ...+ .=..++|+.....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 3499999999999999999987643 1111 11456888887777766554
No 426
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.65 E-value=0.00069 Score=63.88 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .++|+|++|+|||||++.+.+...+..+
T Consensus 333 ~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 333 TLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred ccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3444444455566 9999999999999999999987634444
No 427
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.64 E-value=0.00068 Score=64.31 Aligned_cols=41 Identities=37% Similarity=0.475 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .++|+|++|+|||||++.+.+...+..+
T Consensus 330 ~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 330 ALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred cccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3444444555566 9999999999999999999987634444
No 428
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.64 E-value=0.0014 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47789999999999999998864
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.002 Score=59.71 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+++|++|+||||++..+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3699999999999999999999865
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.63 E-value=0.0017 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999998876
No 431
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.62 E-value=0.0011 Score=56.76 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=26.8
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES 211 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v 211 (238)
|..-+-.+. +++++|+||.||||++|.+-+...+.
T Consensus 43 isf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~ 77 (325)
T COG4586 43 ISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPT 77 (325)
T ss_pred eeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccC
Confidence 333333456 99999999999999999998865433
No 432
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.61 E-value=0.0015 Score=61.64 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ .++|+|++|+|||||++.+.+..
T Consensus 339 l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 339 VGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 444444445566 99999999999999999999865
No 433
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.00078 Score=62.36 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=38.0
Q ss_pred CCcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC
Q 046124 162 EPTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES 211 (238)
Q Consensus 162 ~~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v 211 (238)
.++.||.-..++.+...+..++ +.+++|-||+|||||+|.+.+-.++.
T Consensus 14 i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~ 61 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPD 61 (500)
T ss_pred ceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCC
Confidence 3455666666777777777788 99999999999999999999876333
No 434
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.00057 Score=55.93 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=28.3
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+|.+..++++..-+..++ +.+|+||||.|||||+-.+..-.
T Consensus 11 y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~ 51 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLL 51 (252)
T ss_pred hCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhc
Confidence 343333333333333445 99999999999999999998755
No 435
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.0085 Score=58.23 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=38.3
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|..++..+.+ ..+-++|+.|+||||+++.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999987653 355799999999999999877655
No 436
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.59 E-value=0.00085 Score=65.36 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ +++|+|++|+|||||++.+.+-..+.++
T Consensus 496 vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 496 VLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred cccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4555555555667 9999999999999999999987633333
No 437
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.59 E-value=0.0027 Score=63.09 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=38.8
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|++..+..++..|......-+-++|++|+|||+|++.+....
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999977654567799999999999999988765
No 438
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.59 E-value=0.0034 Score=52.30 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.....+..+... ....-+.|+|+.|+|||+||+.+++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344445444442 234578899999999999999999865
No 439
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.58 E-value=0.0018 Score=49.87 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+++|+.|+|||||++.+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999987753
No 440
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.58 E-value=0.0015 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=18.9
Q ss_pred EEEEecCCCchhHHHHHHHhhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~~ 208 (238)
|=|+|++|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987655
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.0017 Score=58.66 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|+++|++|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.57 E-value=0.0032 Score=52.89 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=40.2
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++||.++..+.+.-...+++..-+-|-||+|+||||=+..+.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4679999999999888899988899999999999999777776654
No 443
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.015 Score=54.13 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=31.5
Q ss_pred eecHH-HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQL-QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~-~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
||.+. .++.+..-+..++ .|||+|.+|+||||++++++.=.
T Consensus 361 y~~k~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 361 YGPKRKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred eCCCCceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHh
Confidence 55444 5555555566667 99999999999999999998644
No 444
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.56 E-value=0.0019 Score=61.17 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .++|+|++|+|||||++.+.+...+..+
T Consensus 355 iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G 395 (576)
T TIGR02204 355 ALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSG 395 (576)
T ss_pred cccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 3444444455667 9999999999999999999997633344
No 445
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.56 E-value=0.0019 Score=61.00 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.5
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+.+|+|.|++|+|||||++.|.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 467899999999999999999998865
No 446
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.54 E-value=0.0017 Score=60.18 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=28.1
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCCCCE
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNY 217 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~ 217 (238)
+.||+|+||+||||+++.|++...+...+|+.
T Consensus 103 rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 103 RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred eEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 89999999999999999999987666667664
No 447
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0017 Score=54.81 Aligned_cols=28 Identities=39% Similarity=0.497 Sum_probs=24.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ .++|+|++|+|||||++++.+-.
T Consensus 27 i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 27 IEKGE--RVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHcCcC
Confidence 34455 99999999999999999999866
No 448
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.54 E-value=0.0019 Score=52.25 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=25.4
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEE
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWV 221 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV 221 (238)
+++|+|+.|.|||||+++|.+=..+. .-.+|+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~----~G~i~i 58 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA----SGEILI 58 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC----CceEEE
Confidence 99999999999999999999854222 235676
No 449
>PLN03211 ABC transporter G-25; Provisional
Probab=96.54 E-value=0.00046 Score=66.62 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.7
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|++|+|||||++.|.+..
T Consensus 92 ~~Ge--~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 92 SPGE--ILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred ECCE--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3445 99999999999999999999865
No 450
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.54 E-value=0.001 Score=62.44 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ .++|+|++|+|||||++.+.+-.
T Consensus 337 il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 337 ALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred cccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 4555555555666 99999999999999999999866
No 451
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.54 E-value=0.002 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.+++.|+|+||.|||||++.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47999999999999999999873
No 452
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.54 E-value=0.00099 Score=64.82 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .|+|+|++|+|||||++.+.+-..+..+
T Consensus 494 vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 494 LIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4555555555566 9999999999999999999987633333
No 453
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.53 E-value=0.00083 Score=62.64 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++..-+..++ ++||||..|+|||||++.|.+-.
T Consensus 307 v~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 307 VDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 444445555667 99999999999999999999866
No 454
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.52 E-value=0.001 Score=63.16 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .++|+|++|+|||||++.+.+...+..+
T Consensus 355 il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 355 VLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred ceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4555555555666 9999999999999999999987633333
No 455
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.52 E-value=0.0084 Score=46.96 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=29.9
Q ss_pred eecHHHHHHHHHHhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLE---GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.+...+.+...+. ......|+++|++|+|||||.+.+.++.
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 355555555544432 2234578899999999999999998854
No 456
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.011 Score=55.08 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=37.4
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~ 206 (238)
.+++|.+...+.|...+..+... -+-++|+.|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 46799999999998888777544 688999999999999998865
No 457
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.51 E-value=0.002 Score=61.33 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .|+|+|++|+|||||++.+.+-..+..+
T Consensus 350 iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 350 GVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4555555555667 9999999999999999999987634443
No 458
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0032 Score=56.65 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++++|++|+||||++..+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999998764
No 459
>PRK08181 transposase; Validated
Probab=96.51 E-value=0.067 Score=46.07 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=29.6
Q ss_pred HHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 177 RCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 177 ~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
.|+.... -+-++|+.|+|||.||..+.+... .....+.++++
T Consensus 101 ~~~~~~~--nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~ 142 (269)
T PRK08181 101 SWLAKGA--NLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT 142 (269)
T ss_pred HHHhcCc--eEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH
Confidence 4555444 599999999999999999988662 12224456554
No 460
>PRK10536 hypothetical protein; Provisional
Probab=96.50 E-value=0.0055 Score=52.29 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=34.0
Q ss_pred ceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 165 VVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++......++.+|.+.+ .|.+.|+.|+|||+||..+.-+.
T Consensus 57 i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 3566667777777887765 99999999999999999987753
No 461
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.00088 Score=61.69 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=27.4
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
||....+..---.|..+. +=|+||+||+|||||++.|.+
T Consensus 90 ~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHh
Confidence 554443333333333344 899999999999999999998
No 462
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.49 E-value=0.0021 Score=62.59 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ .|+|+|++|+|||||++.+.+-..+..+
T Consensus 490 L~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G 529 (708)
T TIGR01193 490 LSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSG 529 (708)
T ss_pred eeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 444444444566 9999999999999999999887633444
No 463
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.49 E-value=0.0023 Score=55.47 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998766
No 464
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.49 E-value=0.0021 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|++|+|||||++.+.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 465
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0077 Score=57.59 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=38.2
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999988754 456899999999999999985443
No 466
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.48 E-value=0.0043 Score=48.83 Aligned_cols=36 Identities=33% Similarity=0.630 Sum_probs=30.1
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE--EEEE
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY--VIWV 221 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~--~~wV 221 (238)
.++ ++.+.||.||||+||..-+.+.. .+.|+| .+|+
T Consensus 27 ~Ge--ivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l 64 (213)
T COG4136 27 KGE--IVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWL 64 (213)
T ss_pred CCc--EEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEE
Confidence 345 99999999999999999999976 467776 6777
No 467
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0015 Score=52.76 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=32.9
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEE
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWV 221 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV 221 (238)
||..+.++.+.-.-..++ ||+|+|..|+||+|+++.|.--. ..-.-.|||
T Consensus 16 ~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE----~P~~G~I~v 65 (256)
T COG4598 16 YGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLE----KPSAGSIRV 65 (256)
T ss_pred cccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhc----CCCCceEEE
Confidence 555444444433333456 99999999999999999997533 222345666
No 468
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.47 E-value=0.0045 Score=51.02 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=33.8
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++|.+..+.-+.-...+.. -|-++|+.|+|||+||+.+-.-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h--~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGH--HLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCCC--CeEEECCCCCCHHHHHHHHHHhC
Confidence 467898888888766666554 79999999999999999998655
No 469
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.47 E-value=0.0022 Score=62.24 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .|+|+|++|+|||||++.+.+-..+..+
T Consensus 480 vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G 520 (694)
T TIGR03375 480 ALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEG 520 (694)
T ss_pred ceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3455555555666 9999999999999999999986633343
No 470
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.47 E-value=0.00097 Score=63.20 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++++...+..++ +++|||+.|+|||||++++.+-.
T Consensus 343 ~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 343 PVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 45666777777778 99999999999999999998765
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.47 E-value=0.0079 Score=49.35 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=34.3
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhcc----CCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLE----SPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~----v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
-+...+.... +..|+||+|+||||++..+...... ....-...+-++...+..+..++..+.
T Consensus 9 Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 9 AIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp HHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 3333443334 7889999999999766655544300 012334556666666666677666654
No 472
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.46 E-value=0.0026 Score=52.44 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchhHHHH-HHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLT-HINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak-~i~~~~ 208 (238)
.-.|+|+|.+|+|||||++ .+++..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCC
Confidence 3479999999999999995 666543
No 473
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.0024 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|+.|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5568999999999999999999754
No 474
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.45 E-value=0.0057 Score=52.06 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC
Q 046124 171 QLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR 228 (238)
Q Consensus 171 ~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~ 228 (238)
...+++..|.. ++..+|||.|++|+|||||...+.... ...++=-.++-|.-|.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCC
Confidence 45566666653 467899999999999999999988776 3233322334444444443
No 475
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.45 E-value=0.0052 Score=55.98 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=37.1
Q ss_pred CcceecHHHHHHHHHHhcC---------C-----cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG---------E-----SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~---------~-----~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+.+ + ....|-++|+.|+||||||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999888888776643 0 14689999999999999999998865
No 476
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.44 E-value=0.0024 Score=61.69 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ +++|+|++|+|||||++.+.+..+...+
T Consensus 468 l~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G 507 (659)
T TIGR00954 468 IESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGG 507 (659)
T ss_pred eecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 444433444556 9999999999999999999997533334
No 477
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.44 E-value=0.0023 Score=60.99 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
++++...+..++ .++|+|++|+|||||++.+.+...+..+
T Consensus 351 l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 351 VFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 444444445566 9999999999999999999887633333
No 478
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.44 E-value=0.0024 Score=60.86 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.++++...+..++ .|+|+|++|+|||||++.+.+-..+..+
T Consensus 356 il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 356 VLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3444444455566 9999999999999999999987633333
No 479
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.44 E-value=0.0074 Score=52.71 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.8
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+|+|+|++|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988765
No 480
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.44 E-value=0.0057 Score=58.74 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHHh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~Il 237 (238)
..++|.++..+.|...+.... .+-++|+.|+|||||++.+.... . ...|+..+|..- .+.+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHH
Confidence 456898888888887777664 79999999999999999999866 2 234677788655 3445566665553
No 481
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.44 E-value=0.0023 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|.+|+|||||++.+.+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 3589999999999999999998764
No 482
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.43 E-value=0.0028 Score=58.46 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=17.3
Q ss_pred eEEEEEecCCCchhHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLT 202 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak 202 (238)
.+|+|+|++|+|||||++
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 399999999999999999
No 483
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.43 E-value=0.0038 Score=56.75 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=34.3
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.+...+. . ..++-|-++|++|+||||||+.+.+..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 45677777777766542 1 135678899999999999999999865
No 484
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.42 E-value=0.0027 Score=60.12 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ .|+|+|++|+|||||++.+.+..
T Consensus 348 l~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 348 LDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 444444445566 99999999999999999999876
No 485
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.42 E-value=0.011 Score=49.13 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=33.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENI 232 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i 232 (238)
-.++-|+|++|+|||||+..+..... ..-..++|++.- .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 45999999999999999999887552 223567888876 5555444
No 486
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.41 E-value=0.012 Score=48.53 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=29.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS 227 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~ 227 (238)
.-.++-|.|++|+|||||+-.+..... ..=..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCC
Confidence 345999999999999999999886541 122346677654444
No 487
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.013 Score=56.13 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++++..-+..++ ++++|||+|.||||+|.++-+=.
T Consensus 482 ~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 36777777778888 99999999999999999987644
No 488
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.41 E-value=0.0094 Score=57.08 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=46.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
..++|.++..+.+...+.... -+-++|+.|+|||||++.+.+.. .. ..|...+.+ .....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~~-~~~~~~~~~-~n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-PD-EELEDILVY-PNPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-Cc-hhheeEEEE-eCCCCCchHHHHHH
Confidence 466888888887777776654 55599999999999999999876 22 233433433 22333444555544
No 489
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.41 E-value=0.0084 Score=53.14 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...++..+. .+...+|+|.|++|+|||||+..+....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555553 3567899999999999999999987766
No 490
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.40 E-value=0.0067 Score=57.19 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=36.3
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+++|.+.....+...+......-|-|+|+.|+||||+|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57898888888887776554456789999999999999999864
No 491
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.40 E-value=0.0027 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.|+|..|+|||||++.+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999987653
No 492
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.40 E-value=0.0031 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.8
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+....|+|+|.+|+|||||++.+++.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346678999999999999999999984
No 493
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.39 E-value=0.004 Score=59.70 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.8
Q ss_pred CcceecHHHHHHHHHHhcCC-----cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGE-----SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~-----~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+.++..+|... ...++.|+|+.|+||||+++.+.+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888888888888652 23469999999999999999999865
No 494
>PRK14527 adenylate kinase; Provisional
Probab=96.38 E-value=0.003 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
..+|.|+|++|+||||+++.+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 495
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.38 E-value=0.0028 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|+++|+.|+|||||+..+.+..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998766
No 496
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.37 E-value=0.0032 Score=49.93 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=22.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|..|+|||||++.+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998876
No 497
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.013 Score=55.13 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=38.6
Q ss_pred CcceecHHHHHHHHHHhcCCcce-EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++..+... .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999876544 46799999999999999987654
No 498
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.37 E-value=0.0051 Score=49.47 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=27.7
Q ss_pred HHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+..+..++.. .....|.|+|.+|+|||||++.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556665532 44568999999999999999999874
No 499
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.37 E-value=0.0026 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-.++|+|+|+.|+|||||++.+....
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998864
No 500
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.37 E-value=0.0029 Score=48.29 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.++|+.|+|||||++.+.+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999997765
Done!