Query 046124
Match_columns 238
No_of_seqs 194 out of 1612
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.5 2.8E-14 9.6E-19 132.6 8.0 71 166-237 131-208 (549)
2 1vt4_I APAF-1 related killer D 99.2 7.5E-12 2.6E-16 122.5 4.5 73 164-237 129-203 (1221)
3 1z6t_A APAF-1, apoptotic prote 99.0 4.2E-10 1.4E-14 104.8 6.6 70 163-234 124-197 (591)
4 3sfz_A APAF-1, apoptotic pepti 98.9 1E-09 3.6E-14 109.3 5.7 66 163-228 124-192 (1249)
5 3qfl_A MLA10; coiled-coil, (CC 98.4 1.8E-06 6.2E-11 63.7 9.0 74 54-135 2-78 (115)
6 2qby_A CDC6 homolog 1, cell di 98.2 1.1E-06 3.8E-11 76.5 6.0 74 163-236 20-97 (386)
7 1w5s_A Origin recognition comp 98.2 1.4E-06 4.8E-11 76.9 6.2 74 163-237 22-108 (412)
8 2qen_A Walker-type ATPase; unk 98.1 2.2E-06 7.4E-11 73.7 5.2 53 163-225 12-64 (350)
9 1fnn_A CDC6P, cell division co 98.1 8.2E-06 2.8E-10 71.3 8.4 72 163-236 17-94 (389)
10 1jbk_A CLPB protein; beta barr 98.1 3.9E-06 1.3E-10 65.4 5.7 46 163-208 22-67 (195)
11 2chg_A Replication factor C sm 98.1 6E-06 2.1E-10 65.8 6.5 46 163-208 17-62 (226)
12 2p65_A Hypothetical protein PF 98.0 6.4E-06 2.2E-10 64.1 5.1 46 163-208 22-67 (187)
13 2fna_A Conserved hypothetical 98.0 1.5E-05 5.3E-10 68.4 8.0 53 163-225 13-65 (357)
14 2qby_B CDC6 homolog 3, cell di 98.0 5.1E-06 1.8E-10 72.6 4.7 74 163-236 20-103 (384)
15 1htw_A HI0065; nucleotide-bind 98.0 4.5E-06 1.6E-10 65.0 3.8 39 172-213 23-61 (158)
16 2v1u_A Cell division control p 98.0 8.9E-06 3E-10 70.8 6.1 74 163-236 19-99 (387)
17 1njg_A DNA polymerase III subu 97.8 1.4E-05 4.9E-10 64.3 4.6 46 163-208 23-69 (250)
18 3c8u_A Fructokinase; YP_612366 97.8 2E-05 6.8E-10 63.5 5.2 39 170-208 6-46 (208)
19 3b85_A Phosphate starvation-in 97.8 1.1E-05 3.7E-10 65.6 3.4 44 166-216 10-53 (208)
20 1in4_A RUVB, holliday junction 97.7 1.5E-05 5E-10 69.2 3.5 46 163-208 25-75 (334)
21 2pcj_A ABC transporter, lipopr 97.7 1.5E-05 5E-10 65.5 3.2 26 181-208 29-54 (224)
22 1znw_A Guanylate kinase, GMP k 97.7 1.8E-05 6.2E-10 63.7 3.6 28 179-208 17-44 (207)
23 2jeo_A Uridine-cytidine kinase 97.7 1.7E-05 5.7E-10 65.7 3.3 38 169-208 12-49 (245)
24 3tif_A Uncharacterized ABC tra 97.7 1.6E-05 5.4E-10 65.8 3.1 26 181-208 30-55 (235)
25 3ec2_A DNA replication protein 97.7 2.6E-05 9E-10 61.1 4.2 41 168-208 19-62 (180)
26 1z6g_A Guanylate kinase; struc 97.7 1.7E-05 5.9E-10 64.6 3.1 35 172-208 13-47 (218)
27 2obl_A ESCN; ATPase, hydrolase 97.7 3.9E-05 1.3E-09 67.1 5.3 45 161-208 50-95 (347)
28 1sxj_B Activator 1 37 kDa subu 97.7 2.5E-05 8.7E-10 66.3 4.0 46 163-208 21-66 (323)
29 1b0u_A Histidine permease; ABC 97.7 1.9E-05 6.5E-10 66.4 3.1 26 181-208 31-56 (262)
30 1ji0_A ABC transporter; ATP bi 97.7 2E-05 6.8E-10 65.4 3.1 26 181-208 31-56 (240)
31 1g6h_A High-affinity branched- 97.7 2E-05 6.7E-10 66.1 3.1 27 180-208 31-57 (257)
32 1sgw_A Putative ABC transporte 97.7 1.8E-05 6.2E-10 64.6 2.6 26 181-208 34-59 (214)
33 3gfo_A Cobalt import ATP-bindi 97.6 2.1E-05 7.3E-10 66.6 3.1 27 180-208 32-58 (275)
34 2olj_A Amino acid ABC transpor 97.6 2.2E-05 7.5E-10 66.1 3.1 26 181-208 49-74 (263)
35 3tr0_A Guanylate kinase, GMP k 97.6 2.4E-05 8.2E-10 62.3 3.2 24 185-208 8-31 (205)
36 2cbz_A Multidrug resistance-as 97.6 2.3E-05 7.7E-10 64.9 3.1 23 186-208 33-55 (237)
37 2d2e_A SUFC protein; ABC-ATPas 97.6 2.5E-05 8.4E-10 65.2 3.3 25 181-207 28-52 (250)
38 4g1u_C Hemin import ATP-bindin 97.6 2.6E-05 9E-10 65.7 3.4 27 180-208 35-61 (266)
39 2pze_A Cystic fibrosis transme 97.6 2.4E-05 8.2E-10 64.4 3.1 26 181-208 33-58 (229)
40 2zu0_C Probable ATP-dependent 97.6 2.6E-05 8.8E-10 65.8 3.3 26 180-207 44-69 (267)
41 1vpl_A ABC transporter, ATP-bi 97.6 2.4E-05 8.3E-10 65.6 3.1 26 181-208 40-65 (256)
42 2onk_A Molybdate/tungstate ABC 97.6 2.6E-05 9E-10 64.7 3.1 24 185-208 25-48 (240)
43 1zp6_A Hypothetical protein AT 97.6 3.1E-05 1.1E-09 61.0 3.4 24 185-208 10-33 (191)
44 2ihy_A ABC transporter, ATP-bi 97.6 2.6E-05 9E-10 66.2 3.1 27 180-208 45-71 (279)
45 1mv5_A LMRA, multidrug resista 97.6 2.8E-05 9.5E-10 64.6 3.2 23 186-208 30-52 (243)
46 2qi9_C Vitamin B12 import ATP- 97.6 2.7E-05 9.3E-10 65.0 3.1 23 186-208 28-50 (249)
47 2ff7_A Alpha-hemolysin translo 97.6 2.8E-05 9.6E-10 64.8 3.1 26 181-208 34-59 (247)
48 1sxj_C Activator 1 40 kDa subu 97.6 5.3E-05 1.8E-09 65.6 4.9 46 163-208 25-70 (340)
49 2yz2_A Putative ABC transporte 97.6 3E-05 1E-09 65.3 3.1 26 181-208 32-57 (266)
50 1iqp_A RFCS; clamp loader, ext 97.6 5.7E-05 1.9E-09 64.2 4.9 46 163-208 25-70 (327)
51 2nq2_C Hypothetical ABC transp 97.6 3.1E-05 1.1E-09 64.8 3.1 26 181-208 30-55 (253)
52 2ixe_A Antigen peptide transpo 97.6 3.1E-05 1.1E-09 65.4 3.1 26 181-208 44-69 (271)
53 1sxj_E Activator 1 40 kDa subu 97.6 3.4E-05 1.2E-09 66.7 3.4 46 163-208 14-60 (354)
54 4gp7_A Metallophosphoesterase; 97.6 2.9E-05 1E-09 60.7 2.6 20 185-204 10-29 (171)
55 1sxj_D Activator 1 41 kDa subu 97.6 4.6E-05 1.6E-09 65.7 4.1 46 163-208 37-82 (353)
56 3asz_A Uridine kinase; cytidin 97.6 4.2E-05 1.4E-09 61.4 3.6 24 184-207 6-29 (211)
57 2ghi_A Transport protein; mult 97.6 3.4E-05 1.2E-09 64.8 3.1 26 181-208 45-70 (260)
58 1rz3_A Hypothetical protein rb 97.6 8.9E-05 3E-09 59.4 5.4 40 169-208 4-46 (201)
59 2v9p_A Replication protein E1; 97.6 6.6E-05 2.3E-09 64.5 4.9 38 169-208 113-150 (305)
60 3h4m_A Proteasome-activating n 97.5 7.7E-05 2.6E-09 62.6 4.5 46 163-208 17-75 (285)
61 2bbs_A Cystic fibrosis transme 97.5 5.2E-05 1.8E-09 64.7 3.2 23 186-208 66-88 (290)
62 3n70_A Transport activator; si 97.5 9.9E-05 3.4E-09 56.0 4.4 45 164-208 2-48 (145)
63 2dpy_A FLII, flagellum-specifi 97.5 0.00011 3.8E-09 66.2 5.4 43 163-208 138-181 (438)
64 3syl_A Protein CBBX; photosynt 97.5 0.00011 3.8E-09 62.3 5.1 45 164-208 32-91 (309)
65 2eyu_A Twitching motility prot 97.5 6E-05 2E-09 63.3 3.2 35 170-208 15-49 (261)
66 3cf0_A Transitional endoplasmi 97.4 0.0001 3.5E-09 62.9 4.6 46 163-208 15-73 (301)
67 3fvq_A Fe(3+) IONS import ATP- 97.4 6.4E-05 2.2E-09 66.0 3.4 26 181-208 29-54 (359)
68 2kjq_A DNAA-related protein; s 97.4 5.8E-05 2E-09 57.9 2.7 25 184-208 36-60 (149)
69 3bos_A Putative DNA replicatio 97.4 0.00015 5E-09 58.7 5.3 40 169-208 37-76 (242)
70 1s96_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 61.3 3.2 24 185-208 17-40 (219)
71 2ehv_A Hypothetical protein PH 97.4 6.9E-05 2.4E-09 61.3 3.3 23 181-205 29-51 (251)
72 3b9p_A CG5977-PA, isoform A; A 97.4 0.00014 4.6E-09 61.5 5.2 46 163-208 21-78 (297)
73 4eun_A Thermoresistant glucoki 97.4 7.3E-05 2.5E-09 59.7 3.3 26 183-208 28-53 (200)
74 2bbw_A Adenylate kinase 4, AK4 97.4 6.9E-05 2.4E-09 61.8 3.2 25 184-208 27-51 (246)
75 3aez_A Pantothenate kinase; tr 97.4 6.6E-05 2.3E-09 64.7 3.2 26 183-208 89-114 (312)
76 1kag_A SKI, shikimate kinase I 97.4 6.3E-05 2.2E-09 58.2 2.8 23 185-207 5-27 (173)
77 2pjz_A Hypothetical protein ST 97.4 6.4E-05 2.2E-09 63.3 2.9 23 186-208 32-54 (263)
78 4a74_A DNA repair and recombin 97.4 0.00032 1.1E-08 56.5 7.1 45 185-229 26-73 (231)
79 2x8a_A Nuclear valosin-contain 97.4 0.00014 4.7E-09 61.4 4.9 45 163-208 10-68 (274)
80 1z47_A CYSA, putative ABC-tran 97.4 7.3E-05 2.5E-09 65.6 3.3 27 180-208 39-65 (355)
81 3pxg_A Negative regulator of g 97.4 0.00015 5.1E-09 65.8 5.3 46 163-208 180-225 (468)
82 2w58_A DNAI, primosome compone 97.4 0.00015 5.1E-09 57.7 4.7 51 170-223 36-90 (202)
83 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.6E-09 58.7 3.8 27 182-208 23-49 (200)
84 2yyz_A Sugar ABC transporter, 97.4 8.2E-05 2.8E-09 65.4 3.3 23 186-208 31-53 (359)
85 2it1_A 362AA long hypothetical 97.4 8.5E-05 2.9E-09 65.4 3.3 23 186-208 31-53 (362)
86 3rlf_A Maltose/maltodextrin im 97.4 8.9E-05 3E-09 65.6 3.3 26 181-208 28-53 (381)
87 3tui_C Methionine import ATP-b 97.4 9E-05 3.1E-09 65.2 3.3 28 179-208 51-78 (366)
88 1g29_1 MALK, maltose transport 97.4 9E-05 3.1E-09 65.4 3.3 26 181-208 28-53 (372)
89 3pvs_A Replication-associated 97.4 0.00012 4.2E-09 66.1 4.2 46 163-208 26-74 (447)
90 1lv7_A FTSH; alpha/beta domain 97.4 0.00013 4.5E-09 60.4 4.1 46 163-208 12-69 (257)
91 2j41_A Guanylate kinase; GMP, 97.3 9.9E-05 3.4E-09 58.7 3.2 24 185-208 7-30 (207)
92 1v43_A Sugar-binding transport 97.3 9.5E-05 3.2E-09 65.3 3.3 26 181-208 36-61 (372)
93 3d31_A Sulfate/molybdate ABC t 97.3 7.2E-05 2.5E-09 65.5 2.5 23 186-208 28-50 (348)
94 3vaa_A Shikimate kinase, SK; s 97.3 0.00013 4.3E-09 58.3 3.6 24 185-208 26-49 (199)
95 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0002 6.9E-09 59.0 5.0 46 163-208 6-63 (262)
96 1rj9_A FTSY, signal recognitio 97.3 0.00014 4.7E-09 62.4 4.1 25 184-208 102-126 (304)
97 3nh6_A ATP-binding cassette SU 97.3 7.3E-05 2.5E-09 64.3 2.2 26 181-208 79-104 (306)
98 2chq_A Replication factor C sm 97.3 0.00014 4.7E-09 61.6 4.0 46 163-208 17-62 (319)
99 3lnc_A Guanylate kinase, GMP k 97.3 7.8E-05 2.7E-09 60.9 2.2 24 185-208 28-52 (231)
100 1oxx_K GLCV, glucose, ABC tran 97.3 6.6E-05 2.2E-09 65.8 1.9 26 181-208 30-55 (353)
101 1knq_A Gluconate kinase; ALFA/ 97.3 0.00013 4.4E-09 56.7 3.4 23 185-207 9-31 (175)
102 2qag_B Septin-6, protein NEDD5 97.3 0.00012 3.9E-09 65.8 3.4 41 166-207 25-65 (427)
103 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00041 1.4E-08 59.0 6.7 46 163-208 12-62 (324)
104 3tqc_A Pantothenate kinase; bi 97.3 0.00021 7.1E-09 61.9 4.8 26 183-208 91-116 (321)
105 3e70_C DPA, signal recognition 97.3 0.00024 8.2E-09 61.6 5.3 26 183-208 128-153 (328)
106 3b9q_A Chloroplast SRP recepto 97.3 0.00012 4.3E-09 62.7 3.4 25 184-208 100-124 (302)
107 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.3E-09 58.8 3.2 25 184-208 8-32 (208)
108 3te6_A Regulatory protein SIR3 97.3 0.0003 1E-08 60.7 5.6 44 165-208 22-69 (318)
109 4fcw_A Chaperone protein CLPB; 97.3 0.00017 5.9E-09 61.0 4.0 45 164-208 18-71 (311)
110 1sq5_A Pantothenate kinase; P- 97.3 0.00025 8.7E-09 60.7 5.0 27 182-208 78-104 (308)
111 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00016 5.6E-09 66.8 4.0 34 179-214 44-77 (538)
112 1n0w_A DNA repair protein RAD5 97.2 0.00094 3.2E-08 54.2 8.1 47 185-232 25-75 (243)
113 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.0002 6.8E-09 65.0 4.4 32 175-208 131-162 (460)
114 2gza_A Type IV secretion syste 97.2 0.00016 5.5E-09 63.4 3.5 34 173-208 166-199 (361)
115 3gd7_A Fusion complex of cysti 97.2 0.00016 5.5E-09 64.2 3.4 27 180-208 45-71 (390)
116 1sxj_A Activator 1 95 kDa subu 97.2 0.00029 1E-08 64.6 5.2 46 163-208 39-101 (516)
117 2cvh_A DNA repair and recombin 97.2 0.00045 1.5E-08 55.3 5.7 43 185-233 21-63 (220)
118 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00037 1.3E-08 61.0 5.4 43 166-208 2-48 (359)
119 3j16_B RLI1P; ribosome recycli 97.2 0.00021 7E-09 67.0 4.1 33 181-215 102-134 (608)
120 1jr3_A DNA polymerase III subu 97.2 0.00029 1E-08 61.0 4.8 46 163-208 16-62 (373)
121 3pfi_A Holliday junction ATP-d 97.2 0.00029 9.8E-09 60.6 4.7 46 163-208 29-79 (338)
122 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00021 7.1E-09 62.0 3.9 36 171-208 160-195 (330)
123 1yqt_A RNAse L inhibitor; ATP- 97.2 0.0002 6.7E-09 66.2 3.8 29 186-214 314-342 (538)
124 1ofh_A ATP-dependent HSL prote 97.2 0.00029 1E-08 59.3 4.6 46 163-208 15-74 (310)
125 3k1j_A LON protease, ATP-depen 97.2 0.0003 1E-08 65.8 4.9 44 163-208 41-84 (604)
126 3ozx_A RNAse L inhibitor; ATP 97.2 0.0002 7E-09 66.1 3.6 29 185-213 26-54 (538)
127 1odf_A YGR205W, hypothetical 3 97.2 0.00035 1.2E-08 59.5 4.8 27 182-208 29-55 (290)
128 3d8b_A Fidgetin-like protein 1 97.2 0.00035 1.2E-08 61.0 5.0 46 163-208 84-141 (357)
129 4e22_A Cytidylate kinase; P-lo 97.2 0.0002 6.9E-09 59.5 3.3 22 185-206 28-49 (252)
130 3uk6_A RUVB-like 2; hexameric 97.2 0.00049 1.7E-08 59.7 5.9 46 163-208 44-94 (368)
131 2og2_A Putative signal recogni 97.2 0.0002 7E-09 62.9 3.4 25 184-208 157-181 (359)
132 3t61_A Gluconokinase; PSI-biol 97.2 0.00018 6.2E-09 57.3 2.8 25 184-208 18-42 (202)
133 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00041 1.4E-08 59.8 5.2 46 163-208 12-69 (322)
134 1oix_A RAS-related protein RAB 97.1 0.00024 8.2E-09 56.1 3.3 25 184-208 29-53 (191)
135 3nwj_A ATSK2; P loop, shikimat 97.1 0.00024 8.2E-09 59.3 3.4 40 167-208 30-72 (250)
136 3eie_A Vacuolar protein sortin 97.1 0.00046 1.6E-08 59.3 5.3 46 163-208 18-75 (322)
137 3bk7_A ABC transporter ATP-bin 97.1 0.00024 8.1E-09 66.6 3.6 29 186-214 384-412 (607)
138 3bk7_A ABC transporter ATP-bin 97.1 0.00026 8.8E-09 66.4 3.8 34 179-214 114-147 (607)
139 3ozx_A RNAse L inhibitor; ATP 97.1 0.00024 8.1E-09 65.7 3.4 28 186-213 296-323 (538)
140 2qt1_A Nicotinamide riboside k 97.1 0.00028 9.5E-09 56.4 3.4 25 184-208 21-45 (207)
141 2qm8_A GTPase/ATPase; G protei 97.1 0.00026 8.7E-09 61.6 3.3 26 183-208 54-79 (337)
142 3kta_A Chromosome segregation 97.1 0.00028 9.7E-09 55.1 3.2 23 185-207 27-49 (182)
143 1cr0_A DNA primase/helicase; R 97.1 0.00029 1E-08 59.6 3.5 35 172-208 25-59 (296)
144 2hf9_A Probable hydrogenase ni 97.1 0.00053 1.8E-08 55.2 4.9 39 170-208 24-62 (226)
145 1ixz_A ATP-dependent metallopr 97.1 0.00025 8.6E-09 58.5 3.0 22 187-208 52-73 (254)
146 1lw7_A Transcriptional regulat 97.1 0.00026 8.8E-09 62.0 3.1 25 184-208 170-194 (365)
147 1qvr_A CLPB protein; coiled co 97.1 0.00039 1.3E-08 67.6 4.7 46 163-208 170-215 (854)
148 3co5_A Putative two-component 97.1 0.00018 6.3E-09 54.4 1.8 45 164-208 5-51 (143)
149 3ney_A 55 kDa erythrocyte memb 97.1 0.00031 1.1E-08 56.5 3.2 25 184-208 19-43 (197)
150 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00025 8.6E-09 57.1 2.6 24 185-208 24-47 (235)
151 2wsm_A Hydrogenase expression/ 97.0 0.00042 1.4E-08 55.6 3.9 42 167-208 13-54 (221)
152 1tq4_A IIGP1, interferon-induc 97.0 0.00058 2E-08 61.0 5.0 25 184-208 69-93 (413)
153 3pxi_A Negative regulator of g 97.0 0.00059 2E-08 65.4 5.3 46 163-208 180-225 (758)
154 2yhs_A FTSY, cell division pro 97.0 0.00033 1.1E-08 63.9 3.4 26 183-208 292-317 (503)
155 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.00056 1.9E-08 62.6 4.9 44 163-208 22-65 (500)
156 1p9r_A General secretion pathw 97.0 0.0008 2.7E-08 60.2 5.7 27 182-208 165-191 (418)
157 2vp4_A Deoxynucleoside kinase; 97.0 0.00026 8.8E-09 57.9 2.3 24 184-207 20-43 (230)
158 2r44_A Uncharacterized protein 97.0 0.0004 1.4E-08 59.6 3.6 44 163-208 27-70 (331)
159 3jvv_A Twitching mobility prot 97.0 0.00049 1.7E-08 60.3 4.2 24 185-208 124-147 (356)
160 3b5x_A Lipid A export ATP-bind 97.0 0.00017 5.8E-09 67.2 1.3 36 171-208 358-393 (582)
161 2yvu_A Probable adenylyl-sulfa 97.0 0.00047 1.6E-08 54.1 3.7 26 183-208 12-37 (186)
162 2p5t_B PEZT; postsegregational 97.0 0.00065 2.2E-08 56.3 4.6 40 169-208 12-56 (253)
163 1uf9_A TT1252 protein; P-loop, 97.0 0.0005 1.7E-08 54.3 3.7 25 182-206 6-30 (203)
164 2qor_A Guanylate kinase; phosp 97.0 0.00034 1.2E-08 55.9 2.8 25 184-208 12-36 (204)
165 3euj_A Chromosome partition pr 97.0 0.0005 1.7E-08 62.7 4.1 24 185-208 30-53 (483)
166 1iy2_A ATP-dependent metallopr 97.0 0.00037 1.3E-08 58.5 3.0 46 163-208 40-97 (278)
167 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00081 2.8E-08 64.4 5.7 46 163-208 186-231 (758)
168 2qp9_X Vacuolar protein sortin 96.9 0.00074 2.5E-08 58.9 4.7 46 163-208 51-108 (355)
169 2r62_A Cell division protease 96.9 0.0003 1E-08 58.4 2.1 46 163-208 11-68 (268)
170 1gvn_B Zeta; postsegregational 96.9 0.00098 3.4E-08 56.5 5.2 39 170-208 14-57 (287)
171 2oap_1 GSPE-2, type II secreti 96.9 0.00078 2.7E-08 61.9 4.9 36 171-208 249-284 (511)
172 2bjv_A PSP operon transcriptio 96.9 0.00069 2.4E-08 56.2 4.1 45 164-208 7-53 (265)
173 3vfd_A Spastin; ATPase, microt 96.9 0.00089 3E-08 59.0 5.0 46 163-208 115-172 (389)
174 1d2n_A N-ethylmaleimide-sensit 96.9 0.0012 3.9E-08 55.1 5.4 45 164-208 34-88 (272)
175 3u61_B DNA polymerase accessor 96.9 0.001 3.4E-08 56.8 5.1 46 163-208 26-72 (324)
176 1l8q_A Chromosomal replication 96.9 0.0014 4.7E-08 56.1 5.9 38 171-208 22-61 (324)
177 3hws_A ATP-dependent CLP prote 96.9 0.001 3.6E-08 57.9 5.2 45 164-208 16-75 (363)
178 3b60_A Lipid A export ATP-bind 96.9 0.00049 1.7E-08 64.1 3.2 26 181-208 368-393 (582)
179 2zan_A Vacuolar protein sortin 96.9 0.001 3.5E-08 59.9 5.1 46 163-208 134-191 (444)
180 1svm_A Large T antigen; AAA+ f 96.9 0.00083 2.8E-08 59.3 4.5 25 184-208 169-193 (377)
181 3j16_B RLI1P; ribosome recycli 96.8 0.00058 2E-08 64.0 3.4 29 185-213 379-407 (608)
182 2qnr_A Septin-2, protein NEDD5 96.8 0.00049 1.7E-08 58.8 2.7 22 186-207 20-41 (301)
183 2c95_A Adenylate kinase 1; tra 96.8 0.00072 2.5E-08 53.1 3.5 25 184-208 9-33 (196)
184 4eaq_A DTMP kinase, thymidylat 96.8 0.0018 6.2E-08 53.0 6.0 25 184-208 26-50 (229)
185 2wji_A Ferrous iron transport 96.8 0.00068 2.3E-08 51.9 3.2 23 185-207 4-26 (165)
186 2px0_A Flagellar biosynthesis 96.8 0.00062 2.1E-08 58.1 3.2 26 183-208 104-129 (296)
187 3iij_A Coilin-interacting nucl 96.8 0.0006 2.1E-08 53.1 2.8 24 185-208 12-35 (180)
188 2yl4_A ATP-binding cassette SU 96.8 0.00048 1.6E-08 64.3 2.6 26 181-208 369-394 (595)
189 1pzn_A RAD51, DNA repair and r 96.8 0.0023 8E-08 55.7 6.7 47 184-230 131-180 (349)
190 2rcn_A Probable GTPase ENGC; Y 96.8 0.0012 3.9E-08 58.0 4.6 33 173-208 207-239 (358)
191 1pui_A ENGB, probable GTP-bind 96.8 0.00034 1.2E-08 55.6 1.1 26 183-208 25-50 (210)
192 2bwj_A Adenylate kinase 5; pho 96.8 0.00082 2.8E-08 52.9 3.4 24 185-208 13-36 (199)
193 1tf7_A KAIC; homohexamer, hexa 96.8 0.0007 2.4E-08 62.2 3.3 37 170-208 26-65 (525)
194 2ewv_A Twitching motility prot 96.7 0.00076 2.6E-08 59.4 3.4 25 184-208 136-160 (372)
195 1y63_A LMAJ004144AAA protein; 96.7 0.0008 2.7E-08 52.9 3.2 24 184-207 10-33 (184)
196 1g8p_A Magnesium-chelatase 38 96.7 0.00083 2.8E-08 57.7 3.5 45 164-208 25-69 (350)
197 1qf9_A UMP/CMP kinase, protein 96.7 0.00094 3.2E-08 52.1 3.6 24 184-207 6-29 (194)
198 1ojl_A Transcriptional regulat 96.7 0.0012 4.2E-08 56.3 4.6 45 164-208 3-49 (304)
199 2wjg_A FEOB, ferrous iron tran 96.7 0.00084 2.9E-08 52.1 3.1 24 184-207 7-30 (188)
200 1vma_A Cell division protein F 96.7 0.00092 3.1E-08 57.4 3.6 26 183-208 103-128 (306)
201 1ukz_A Uridylate kinase; trans 96.7 0.00096 3.3E-08 52.9 3.5 26 183-208 14-39 (203)
202 3qf4_B Uncharacterized ABC tra 96.7 0.00066 2.2E-08 63.5 2.8 23 186-208 383-405 (598)
203 1um8_A ATP-dependent CLP prote 96.7 0.0017 5.8E-08 56.8 5.3 46 163-208 21-96 (376)
204 2yv5_A YJEQ protein; hydrolase 96.7 0.0014 4.7E-08 56.0 4.6 33 172-208 156-188 (302)
205 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00098 3.3E-08 50.9 3.3 21 185-205 24-44 (149)
206 4b4t_L 26S protease subunit RP 96.7 0.0019 6.4E-08 58.1 5.5 45 164-208 182-239 (437)
207 1nlf_A Regulatory protein REPA 96.7 0.00094 3.2E-08 56.0 3.2 27 180-208 28-54 (279)
208 2z4s_A Chromosomal replication 96.7 0.002 6.8E-08 57.9 5.5 37 172-208 117-154 (440)
209 2iw3_A Elongation factor 3A; a 96.7 0.00088 3E-08 65.8 3.4 26 179-206 458-483 (986)
210 3m6a_A ATP-dependent protease 96.6 0.0017 5.6E-08 60.1 5.1 45 164-208 82-132 (543)
211 1ypw_A Transitional endoplasmi 96.6 0.00072 2.5E-08 65.4 2.7 45 164-208 205-262 (806)
212 1m7g_A Adenylylsulfate kinase; 96.6 0.0011 3.8E-08 53.1 3.4 26 183-208 24-49 (211)
213 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.7E-08 51.0 3.2 25 184-208 7-31 (168)
214 2iw3_A Elongation factor 3A; a 96.6 0.00085 2.9E-08 65.9 3.1 26 181-208 698-723 (986)
215 1xjc_A MOBB protein homolog; s 96.6 0.0012 3.9E-08 51.8 3.3 25 184-208 4-28 (169)
216 4b4t_M 26S protease regulatory 96.6 0.0015 5.3E-08 58.6 4.5 45 164-208 182-239 (434)
217 2c9o_A RUVB-like 1; hexameric 96.6 0.0025 8.6E-08 57.4 6.0 46 163-208 37-87 (456)
218 1np6_A Molybdopterin-guanine d 96.6 0.0012 3.9E-08 52.0 3.3 25 184-208 6-30 (174)
219 4a82_A Cystic fibrosis transme 96.6 0.00055 1.9E-08 63.7 1.5 26 181-208 366-391 (578)
220 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4E-08 52.4 3.3 25 184-208 20-44 (201)
221 2gj8_A MNME, tRNA modification 96.6 0.0012 4.1E-08 51.0 3.2 23 185-207 5-27 (172)
222 1moz_A ARL1, ADP-ribosylation 96.6 0.0014 4.8E-08 50.5 3.6 35 172-206 5-40 (183)
223 4b4t_K 26S protease regulatory 96.6 0.0017 5.9E-08 58.2 4.6 45 164-208 173-230 (428)
224 2ce7_A Cell division protein F 96.6 0.0017 5.9E-08 59.0 4.5 46 163-208 16-73 (476)
225 2wwf_A Thymidilate kinase, put 96.6 0.0013 4.5E-08 52.3 3.4 25 184-208 10-34 (212)
226 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.7E-08 53.2 3.3 24 184-207 7-30 (227)
227 3r20_A Cytidylate kinase; stru 96.5 0.0013 4.6E-08 54.1 3.3 24 184-207 9-32 (233)
228 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.9E-08 52.1 3.4 25 184-208 9-33 (215)
229 3t15_A Ribulose bisphosphate c 96.5 0.0013 4.5E-08 55.8 3.3 26 183-208 35-60 (293)
230 4b4t_J 26S protease regulatory 96.5 0.002 6.9E-08 57.3 4.6 45 164-208 149-206 (405)
231 2dyk_A GTP-binding protein; GT 96.5 0.0015 5.2E-08 49.0 3.3 24 185-208 2-25 (161)
232 1uj2_A Uridine-cytidine kinase 96.5 0.0015 5.2E-08 53.9 3.6 27 182-208 20-46 (252)
233 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0023 7.8E-08 58.6 4.9 46 163-208 31-88 (499)
234 1u0l_A Probable GTPase ENGC; p 96.5 0.0013 4.4E-08 56.1 3.1 23 186-208 171-193 (301)
235 3qf4_A ABC transporter, ATP-bi 96.5 0.00086 3E-08 62.5 2.1 26 181-208 368-393 (587)
236 2qag_C Septin-7; cell cycle, c 96.5 0.0012 4E-08 59.2 2.7 23 186-208 33-55 (418)
237 2grj_A Dephospho-COA kinase; T 96.5 0.0017 5.8E-08 51.8 3.4 25 183-207 11-35 (192)
238 1mky_A Probable GTP-binding pr 96.5 0.0028 9.6E-08 56.8 5.2 43 166-208 151-204 (439)
239 1zj6_A ADP-ribosylation factor 96.5 0.0033 1.1E-07 48.8 4.9 35 172-207 5-39 (187)
240 1q3t_A Cytidylate kinase; nucl 96.4 0.0016 5.6E-08 53.1 3.3 26 183-208 15-40 (236)
241 3umf_A Adenylate kinase; rossm 96.4 0.0019 6.5E-08 52.6 3.5 26 183-208 28-53 (217)
242 1fzq_A ADP-ribosylation factor 96.4 0.0022 7.4E-08 49.9 3.8 26 182-207 14-39 (181)
243 1g41_A Heat shock protein HSLU 96.4 0.0019 6.6E-08 58.1 3.9 46 163-208 15-74 (444)
244 2ce2_X GTPase HRAS; signaling 96.4 0.0019 6.4E-08 48.5 3.3 24 185-208 4-27 (166)
245 1z2a_A RAS-related protein RAB 96.4 0.002 6.9E-08 48.6 3.2 25 184-208 5-29 (168)
246 1zu4_A FTSY; GTPase, signal re 96.4 0.0021 7.1E-08 55.5 3.6 26 183-208 104-129 (320)
247 4aby_A DNA repair protein RECN 96.4 0.0008 2.7E-08 59.5 1.0 24 185-208 61-84 (415)
248 4b4t_H 26S protease regulatory 96.4 0.0032 1.1E-07 56.9 4.8 45 164-208 210-267 (467)
249 3p32_A Probable GTPase RV1496/ 96.4 0.0043 1.5E-07 54.0 5.6 37 172-208 65-103 (355)
250 4gzl_A RAS-related C3 botulinu 96.3 0.0022 7.6E-08 50.8 3.5 41 168-208 14-54 (204)
251 1ega_A Protein (GTP-binding pr 96.3 0.002 6.8E-08 54.9 3.4 25 184-208 8-32 (301)
252 3qkt_A DNA double-strand break 96.3 0.002 6.9E-08 55.8 3.4 23 184-206 23-45 (339)
253 2o5v_A DNA replication and rep 96.3 0.002 6.9E-08 56.4 3.4 22 185-206 27-48 (359)
254 1f6b_A SAR1; gtpases, N-termin 96.3 0.0029 9.9E-08 50.0 4.0 26 182-207 23-48 (198)
255 2f6r_A COA synthase, bifunctio 96.3 0.002 6.9E-08 54.3 3.3 23 183-205 74-96 (281)
256 3lda_A DNA repair protein RAD5 96.3 0.011 3.9E-07 52.4 8.2 48 185-232 179-229 (400)
257 1ls1_A Signal recognition part 96.3 0.0021 7.1E-08 54.7 3.3 25 184-208 98-122 (295)
258 3hu3_A Transitional endoplasmi 96.3 0.0039 1.3E-07 56.9 5.3 45 164-208 205-262 (489)
259 2www_A Methylmalonic aciduria 96.3 0.0022 7.5E-08 55.9 3.5 25 184-208 74-98 (349)
260 3hr8_A Protein RECA; alpha and 96.3 0.025 8.6E-07 49.4 10.2 43 184-229 61-103 (356)
261 2ged_A SR-beta, signal recogni 96.3 0.0022 7.6E-08 49.9 3.2 26 183-208 47-72 (193)
262 3tlx_A Adenylate kinase 2; str 96.3 0.0024 8.1E-08 52.6 3.5 26 183-208 28-53 (243)
263 3cr8_A Sulfate adenylyltranfer 96.3 0.0017 5.7E-08 60.2 2.7 24 185-208 370-393 (552)
264 1t9h_A YLOQ, probable GTPase E 96.3 0.00086 2.9E-08 57.6 0.7 23 186-208 175-197 (307)
265 1qhl_A Protein (cell division 96.3 0.0003 1E-08 57.9 -2.2 23 186-208 29-51 (227)
266 1u8z_A RAS-related protein RAL 96.3 0.0025 8.6E-08 47.9 3.2 25 184-208 4-28 (168)
267 3t1o_A Gliding protein MGLA; G 96.3 0.0025 8.6E-08 49.5 3.2 25 184-208 14-38 (198)
268 2p67_A LAO/AO transport system 96.2 0.0024 8.2E-08 55.4 3.3 27 182-208 54-80 (341)
269 1e69_A Chromosome segregation 96.2 0.0019 6.4E-08 55.5 2.6 21 185-205 25-45 (322)
270 1svi_A GTP-binding protein YSX 96.2 0.0028 9.5E-08 49.4 3.4 25 183-207 22-46 (195)
271 3qks_A DNA double-strand break 96.2 0.0026 9E-08 51.0 3.3 22 184-205 23-44 (203)
272 3q72_A GTP-binding protein RAD 96.2 0.0022 7.4E-08 48.5 2.6 23 185-207 3-25 (166)
273 3con_A GTPase NRAS; structural 96.2 0.0026 9E-08 49.4 3.2 24 185-208 22-45 (190)
274 3szr_A Interferon-induced GTP- 96.2 0.0013 4.6E-08 61.5 1.7 26 183-208 44-69 (608)
275 1z08_A RAS-related protein RAB 96.2 0.0027 9.2E-08 48.1 3.2 25 184-208 6-30 (170)
276 1z0j_A RAB-22, RAS-related pro 96.2 0.0028 9.5E-08 47.9 3.2 25 184-208 6-30 (170)
277 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0026 9E-08 55.7 3.3 21 185-205 24-44 (365)
278 1c1y_A RAS-related protein RAP 96.2 0.003 1E-07 47.6 3.2 24 185-208 4-27 (167)
279 1ky3_A GTP-binding protein YPT 96.2 0.0029 1E-07 48.4 3.2 26 183-208 7-32 (182)
280 3lxx_A GTPase IMAP family memb 96.2 0.0027 9.4E-08 51.7 3.1 26 183-208 28-53 (239)
281 4b4t_I 26S protease regulatory 96.2 0.0042 1.4E-07 55.7 4.5 45 164-208 183-240 (437)
282 3pqc_A Probable GTP-binding pr 96.2 0.003 1E-07 49.0 3.2 25 184-208 23-47 (195)
283 2fn4_A P23, RAS-related protei 96.2 0.0031 1.1E-07 48.2 3.3 26 183-208 8-33 (181)
284 1ek0_A Protein (GTP-binding pr 96.2 0.003 1E-07 47.6 3.2 24 185-208 4-27 (170)
285 3kl4_A SRP54, signal recogniti 96.2 0.0052 1.8E-07 55.2 5.1 26 183-208 96-121 (433)
286 1kao_A RAP2A; GTP-binding prot 96.2 0.0031 1.1E-07 47.3 3.2 24 185-208 4-27 (167)
287 1w1w_A Structural maintenance 96.2 0.0025 8.5E-08 57.0 3.0 24 185-208 27-50 (430)
288 3d3q_A TRNA delta(2)-isopenten 96.1 0.0031 1.1E-07 54.8 3.5 24 185-208 8-31 (340)
289 2lkc_A Translation initiation 96.1 0.0032 1.1E-07 48.1 3.2 25 183-207 7-31 (178)
290 1m2o_B GTP-binding protein SAR 96.1 0.0033 1.1E-07 49.3 3.3 25 183-207 22-46 (190)
291 1g16_A RAS-related protein SEC 96.1 0.0037 1.3E-07 47.2 3.5 24 184-207 3-26 (170)
292 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0033 1.1E-07 48.7 3.3 25 184-208 7-31 (184)
293 1ak2_A Adenylate kinase isoenz 96.1 0.0032 1.1E-07 51.2 3.3 24 185-208 17-40 (233)
294 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0034 1.1E-07 47.9 3.2 25 184-208 7-31 (177)
295 1v5w_A DMC1, meiotic recombina 96.1 0.02 6.7E-07 49.6 8.4 50 184-234 122-175 (343)
296 3bh0_A DNAB-like replicative h 96.1 0.013 4.6E-07 50.0 7.3 56 172-234 58-113 (315)
297 3ice_A Transcription terminati 96.1 0.0069 2.4E-07 53.7 5.4 42 185-227 175-216 (422)
298 3dm5_A SRP54, signal recogniti 96.1 0.0072 2.5E-07 54.4 5.7 26 183-208 99-124 (443)
299 3tw8_B RAS-related protein RAB 96.1 0.0027 9.2E-08 48.5 2.6 26 183-208 8-33 (181)
300 1ni3_A YCHF GTPase, YCHF GTP-b 96.1 0.0032 1.1E-07 55.8 3.3 23 185-207 21-43 (392)
301 3ihw_A Centg3; RAS, centaurin, 96.1 0.0034 1.2E-07 48.9 3.2 24 184-207 20-43 (184)
302 1r2q_A RAS-related protein RAB 96.1 0.0036 1.2E-07 47.2 3.2 24 184-207 6-29 (170)
303 3ux8_A Excinuclease ABC, A sub 96.1 0.0024 8.4E-08 60.3 2.6 21 179-201 41-61 (670)
304 2hxs_A RAB-26, RAS-related pro 96.1 0.0039 1.3E-07 47.6 3.4 24 184-207 6-29 (178)
305 1nrj_B SR-beta, signal recogni 96.0 0.0039 1.3E-07 49.6 3.4 26 183-208 11-36 (218)
306 1upt_A ARL1, ADP-ribosylation 96.0 0.0037 1.3E-07 47.3 3.2 25 184-208 7-31 (171)
307 1z0f_A RAB14, member RAS oncog 96.0 0.0037 1.3E-07 47.6 3.2 26 183-208 14-39 (179)
308 2bme_A RAB4A, RAS-related prot 96.0 0.0039 1.3E-07 48.1 3.3 26 183-208 9-34 (186)
309 2z43_A DNA repair and recombin 96.0 0.02 6.8E-07 49.1 8.0 48 185-233 108-159 (324)
310 2y8e_A RAB-protein 6, GH09086P 96.0 0.004 1.4E-07 47.5 3.3 24 185-208 15-38 (179)
311 3ux8_A Excinuclease ABC, A sub 96.0 0.0019 6.6E-08 61.0 1.7 20 186-205 350-369 (670)
312 2qgz_A Helicase loader, putati 96.0 0.0055 1.9E-07 52.4 4.4 39 170-208 135-176 (308)
313 1ewq_A DNA mismatch repair pro 96.0 0.0032 1.1E-07 60.5 3.2 23 185-207 577-599 (765)
314 3kkq_A RAS-related protein M-R 96.0 0.004 1.4E-07 48.0 3.2 26 183-208 17-42 (183)
315 2a9k_A RAS-related protein RAL 96.0 0.004 1.4E-07 47.8 3.2 25 184-208 18-42 (187)
316 1ksh_A ARF-like protein 2; sma 96.0 0.004 1.4E-07 48.1 3.2 27 182-208 16-42 (186)
317 2dr3_A UPF0273 protein PH0284; 96.0 0.0039 1.3E-07 50.5 3.2 23 185-207 24-46 (247)
318 2b6h_A ADP-ribosylation factor 96.0 0.0032 1.1E-07 49.4 2.6 27 180-206 25-51 (192)
319 2oil_A CATX-8, RAS-related pro 96.0 0.0041 1.4E-07 48.5 3.1 26 183-208 24-49 (193)
320 3bc1_A RAS-related protein RAB 96.0 0.0042 1.4E-07 47.9 3.2 26 183-208 10-35 (195)
321 1wb9_A DNA mismatch repair pro 96.0 0.0035 1.2E-07 60.6 3.2 24 184-207 607-630 (800)
322 3clv_A RAB5 protein, putative; 95.9 0.0042 1.5E-07 48.2 3.2 26 183-208 6-31 (208)
323 2efe_B Small GTP-binding prote 95.9 0.0044 1.5E-07 47.5 3.2 25 184-208 12-36 (181)
324 3t5g_A GTP-binding protein RHE 95.9 0.0046 1.6E-07 47.5 3.3 23 184-206 6-28 (181)
325 1vg8_A RAS-related protein RAB 95.9 0.0044 1.5E-07 48.7 3.2 26 183-208 7-32 (207)
326 2fg5_A RAB-22B, RAS-related pr 95.9 0.0046 1.6E-07 48.3 3.3 26 183-208 22-47 (192)
327 3dz8_A RAS-related protein RAB 95.9 0.0048 1.6E-07 48.1 3.3 26 183-208 22-47 (191)
328 3llu_A RAS-related GTP-binding 95.9 0.0044 1.5E-07 48.6 3.0 24 184-207 20-43 (196)
329 2iwr_A Centaurin gamma 1; ANK 95.9 0.0039 1.3E-07 47.8 2.6 24 184-207 7-30 (178)
330 2bov_A RAla, RAS-related prote 95.9 0.0047 1.6E-07 48.4 3.2 26 183-208 13-38 (206)
331 3fwy_A Light-independent proto 95.9 0.0045 1.5E-07 53.2 3.3 27 182-208 46-72 (314)
332 2g6b_A RAS-related protein RAB 95.9 0.0048 1.6E-07 47.2 3.2 26 183-208 9-34 (180)
333 1j8m_F SRP54, signal recogniti 95.9 0.0043 1.5E-07 52.9 3.1 25 184-208 98-122 (297)
334 3c5c_A RAS-like protein 12; GD 95.9 0.0048 1.6E-07 48.1 3.2 25 184-208 21-45 (187)
335 3tkl_A RAS-related protein RAB 95.9 0.0049 1.7E-07 47.9 3.2 26 183-208 15-40 (196)
336 2cjw_A GTP-binding protein GEM 95.9 0.0049 1.7E-07 48.4 3.2 23 184-206 6-28 (192)
337 3bwd_D RAC-like GTP-binding pr 95.9 0.005 1.7E-07 47.2 3.2 25 184-208 8-32 (182)
338 3oes_A GTPase rhebl1; small GT 95.8 0.0052 1.8E-07 48.4 3.3 26 183-208 23-48 (201)
339 1yrb_A ATP(GTP)binding protein 95.8 0.0063 2.2E-07 50.0 3.9 26 183-208 13-38 (262)
340 3cbq_A GTP-binding protein REM 95.8 0.0032 1.1E-07 49.6 2.1 24 183-206 22-45 (195)
341 2zr9_A Protein RECA, recombina 95.8 0.0074 2.5E-07 52.6 4.5 42 185-229 62-103 (349)
342 2atv_A RERG, RAS-like estrogen 95.8 0.0051 1.8E-07 48.1 3.2 27 182-208 26-52 (196)
343 3zvl_A Bifunctional polynucleo 95.8 0.0052 1.8E-07 54.8 3.5 27 182-208 256-282 (416)
344 3g5u_A MCG1178, multidrug resi 95.8 0.0041 1.4E-07 63.1 3.1 28 179-208 1056-1083(1284)
345 2gno_A DNA polymerase III, gam 95.8 0.024 8.4E-07 48.3 7.6 63 167-230 1-65 (305)
346 2i1q_A DNA repair and recombin 95.8 0.027 9.3E-07 48.0 7.9 51 184-234 98-161 (322)
347 3lv8_A DTMP kinase, thymidylat 95.8 0.01 3.6E-07 48.8 5.1 38 184-223 27-64 (236)
348 1gwn_A RHO-related GTP-binding 95.8 0.0055 1.9E-07 48.8 3.3 26 183-208 27-52 (205)
349 2gf0_A GTP-binding protein DI- 95.8 0.0056 1.9E-07 47.7 3.3 26 183-208 7-32 (199)
350 2gf9_A RAS-related protein RAB 95.8 0.0054 1.9E-07 47.6 3.2 25 184-208 22-46 (189)
351 2ew1_A RAS-related protein RAB 95.8 0.0056 1.9E-07 48.6 3.3 26 183-208 25-50 (201)
352 1zbd_A Rabphilin-3A; G protein 95.8 0.0053 1.8E-07 48.2 3.1 25 184-208 8-32 (203)
353 2fh5_B SR-beta, signal recogni 95.8 0.0055 1.9E-07 48.6 3.2 25 184-208 7-31 (214)
354 2qu8_A Putative nucleolar GTP- 95.8 0.0061 2.1E-07 49.1 3.5 26 183-208 28-53 (228)
355 3reg_A RHO-like small GTPase; 95.8 0.0056 1.9E-07 47.7 3.2 26 183-208 22-47 (194)
356 1zd9_A ADP-ribosylation factor 95.8 0.0057 1.9E-07 47.6 3.2 25 184-208 22-46 (188)
357 1x3s_A RAS-related protein RAB 95.7 0.0057 2E-07 47.4 3.2 25 184-208 15-39 (195)
358 2v3c_C SRP54, signal recogniti 95.7 0.0047 1.6E-07 55.5 2.9 25 184-208 99-123 (432)
359 4bas_A ADP-ribosylation factor 95.7 0.0049 1.7E-07 48.0 2.7 26 183-208 16-41 (199)
360 2j37_W Signal recognition part 95.7 0.01 3.6E-07 54.2 5.3 26 183-208 100-125 (504)
361 2a5j_A RAS-related protein RAB 95.7 0.0059 2E-07 47.6 3.1 25 184-208 21-45 (191)
362 1tf7_A KAIC; homohexamer, hexa 95.7 0.0056 1.9E-07 56.1 3.5 24 185-208 282-305 (525)
363 2o52_A RAS-related protein RAB 95.7 0.0057 2E-07 48.2 3.1 26 183-208 24-49 (200)
364 2h17_A ADP-ribosylation factor 95.7 0.0061 2.1E-07 47.1 3.1 24 184-207 21-44 (181)
365 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0064 2.2E-07 47.9 3.3 26 183-208 7-32 (206)
366 1z06_A RAS-related protein RAB 95.7 0.0063 2.2E-07 47.2 3.2 26 183-208 19-44 (189)
367 2p5s_A RAS and EF-hand domain 95.7 0.0062 2.1E-07 47.8 3.1 26 183-208 27-52 (199)
368 2fv8_A H6, RHO-related GTP-bin 95.7 0.0067 2.3E-07 48.0 3.3 25 184-208 25-49 (207)
369 2q3h_A RAS homolog gene family 95.6 0.0064 2.2E-07 47.6 3.0 25 183-207 19-43 (201)
370 2j1l_A RHO-related GTP-binding 95.6 0.0065 2.2E-07 48.5 3.1 25 183-207 33-57 (214)
371 3pxi_A Negative regulator of g 95.6 0.0083 2.8E-07 57.4 4.3 46 163-208 491-545 (758)
372 2h57_A ADP-ribosylation factor 95.6 0.0053 1.8E-07 47.8 2.4 25 184-208 21-45 (190)
373 3iev_A GTP-binding protein ERA 95.6 0.0067 2.3E-07 51.7 3.3 26 183-208 9-34 (308)
374 3foz_A TRNA delta(2)-isopenten 95.6 0.0072 2.4E-07 51.9 3.4 25 184-208 10-34 (316)
375 2qag_A Septin-2, protein NEDD5 95.6 0.0046 1.6E-07 54.1 2.2 27 181-207 34-60 (361)
376 1tue_A Replication protein E1; 95.6 0.012 4E-07 47.7 4.4 38 171-208 44-82 (212)
377 3cph_A RAS-related protein SEC 95.6 0.0071 2.4E-07 47.7 3.2 26 183-208 19-44 (213)
378 2il1_A RAB12; G-protein, GDP, 95.6 0.0057 2E-07 47.8 2.6 25 184-208 26-50 (192)
379 1wf3_A GTP-binding protein; GT 95.6 0.007 2.4E-07 51.6 3.3 25 184-208 7-31 (301)
380 2atx_A Small GTP binding prote 95.6 0.0077 2.6E-07 46.9 3.3 25 184-208 18-42 (194)
381 3g5u_A MCG1178, multidrug resi 95.6 0.0049 1.7E-07 62.5 2.6 26 181-208 415-440 (1284)
382 2xxa_A Signal recognition part 95.5 0.015 5E-07 52.3 5.4 26 183-208 99-124 (433)
383 3th5_A RAS-related C3 botulinu 94.5 0.0022 7.5E-08 50.6 0.0 29 179-207 25-53 (204)
384 2gco_A H9, RHO-related GTP-bin 95.5 0.0079 2.7E-07 47.4 3.3 25 184-208 25-49 (201)
385 2aka_B Dynamin-1; fusion prote 95.5 0.015 5.1E-07 48.7 5.2 26 183-208 25-50 (299)
386 1udx_A The GTP-binding protein 95.5 0.0037 1.3E-07 55.9 1.5 23 185-207 158-180 (416)
387 2xtp_A GTPase IMAP family memb 95.5 0.0074 2.5E-07 49.7 3.2 26 183-208 21-46 (260)
388 3a8t_A Adenylate isopentenyltr 95.5 0.0076 2.6E-07 52.3 3.3 24 185-208 41-64 (339)
389 2ffh_A Protein (FFH); SRP54, s 95.5 0.0077 2.6E-07 53.9 3.5 25 184-208 98-122 (425)
390 4dhe_A Probable GTP-binding pr 95.5 0.0047 1.6E-07 49.3 1.9 26 183-208 28-53 (223)
391 2hup_A RAS-related protein RAB 95.5 0.0082 2.8E-07 47.4 3.3 26 183-208 28-53 (201)
392 3upu_A ATP-dependent DNA helic 95.5 0.02 7E-07 51.4 6.2 41 167-208 29-69 (459)
393 3f9v_A Minichromosome maintena 95.5 0.0049 1.7E-07 57.5 2.2 46 163-208 295-351 (595)
394 3gmt_A Adenylate kinase; ssgci 95.5 0.0085 2.9E-07 49.2 3.3 25 184-208 8-32 (230)
395 3end_A Light-independent proto 95.5 0.0085 2.9E-07 50.7 3.4 28 181-208 38-65 (307)
396 2g3y_A GTP-binding protein GEM 95.5 0.0077 2.6E-07 48.5 3.0 24 183-206 36-59 (211)
397 1qvr_A CLPB protein; coiled co 95.4 0.0088 3E-07 58.1 3.9 45 164-208 559-612 (854)
398 3thx_B DNA mismatch repair pro 95.4 0.0052 1.8E-07 60.2 2.2 22 184-205 673-694 (918)
399 2fu5_C RAS-related protein RAB 95.4 0.0048 1.6E-07 47.5 1.7 26 183-208 7-32 (183)
400 3def_A T7I23.11 protein; chlor 95.4 0.015 5.2E-07 48.1 4.8 26 183-208 35-60 (262)
401 2qtf_A Protein HFLX, GTP-bindi 95.4 0.0075 2.6E-07 52.8 3.0 26 183-208 178-203 (364)
402 2j0v_A RAC-like GTP-binding pr 95.4 0.0092 3.1E-07 47.2 3.3 25 184-208 9-33 (212)
403 2f7s_A C25KG, RAS-related prot 95.4 0.008 2.7E-07 47.7 2.9 26 183-208 24-49 (217)
404 3cf2_A TER ATPase, transitiona 95.4 0.01 3.6E-07 57.2 4.2 45 164-208 205-262 (806)
405 3lxw_A GTPase IMAP family memb 95.4 0.0083 2.8E-07 49.4 3.1 25 184-208 21-45 (247)
406 1ypw_A Transitional endoplasmi 95.4 0.0042 1.4E-07 60.0 1.4 46 163-208 477-535 (806)
407 1p5z_B DCK, deoxycytidine kina 95.4 0.0056 1.9E-07 50.7 2.0 26 183-208 23-48 (263)
408 2x77_A ADP-ribosylation factor 95.4 0.0095 3.3E-07 46.1 3.2 25 182-206 20-44 (189)
409 3q3j_B RHO-related GTP-binding 95.4 0.0093 3.2E-07 47.6 3.2 25 184-208 27-51 (214)
410 3thx_A DNA mismatch repair pro 95.4 0.0073 2.5E-07 59.2 3.0 21 184-204 662-682 (934)
411 3t5d_A Septin-7; GTP-binding p 95.3 0.0079 2.7E-07 50.2 2.7 24 184-207 8-31 (274)
412 2e87_A Hypothetical protein PH 95.3 0.0083 2.9E-07 52.2 2.7 26 183-208 166-191 (357)
413 1h65_A Chloroplast outer envel 95.2 0.019 6.4E-07 47.7 4.8 26 183-208 38-63 (270)
414 1r6b_X CLPA protein; AAA+, N-t 95.2 0.021 7.2E-07 54.5 5.6 46 163-208 458-512 (758)
415 2ck3_D ATP synthase subunit be 95.2 0.042 1.4E-06 49.8 7.2 60 175-236 143-204 (482)
416 4f4c_A Multidrug resistance pr 95.1 0.0076 2.6E-07 61.3 2.4 28 179-208 1102-1129(1321)
417 1puj_A YLQF, conserved hypothe 95.1 0.024 8.3E-07 47.7 5.2 26 183-208 119-144 (282)
418 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.013 4.4E-07 50.6 3.4 23 185-207 124-146 (331)
419 2hjg_A GTP-binding protein ENG 95.1 0.02 6.9E-07 51.1 4.9 43 166-208 150-199 (436)
420 2o8b_B DNA mismatch repair pro 95.1 0.0099 3.4E-07 58.9 3.0 23 184-207 789-811 (1022)
421 3cpj_B GTP-binding protein YPT 95.1 0.012 4.2E-07 47.0 3.1 26 183-208 12-37 (223)
422 4f4c_A Multidrug resistance pr 95.1 0.028 9.4E-07 57.2 6.2 26 181-208 443-468 (1321)
423 2r6a_A DNAB helicase, replicat 95.0 0.015 5.2E-07 52.2 3.9 49 171-223 192-240 (454)
424 4edh_A DTMP kinase, thymidylat 95.0 0.015 5.1E-07 47.0 3.4 24 185-208 7-30 (213)
425 1u94_A RECA protein, recombina 95.0 0.02 6.7E-07 50.1 4.4 42 185-229 64-105 (356)
426 3cnl_A YLQF, putative uncharac 95.0 0.024 8.3E-07 47.2 4.7 36 172-208 88-123 (262)
427 2yc2_C IFT27, small RAB-relate 95.0 0.0057 1.9E-07 47.9 0.8 24 184-207 20-43 (208)
428 3auy_A DNA double-strand break 94.9 0.015 5.2E-07 50.8 3.5 22 184-205 25-46 (371)
429 3v9p_A DTMP kinase, thymidylat 94.9 0.012 4.1E-07 48.1 2.6 24 185-208 26-49 (227)
430 1jwy_B Dynamin A GTPase domain 94.9 0.015 5.3E-07 49.1 3.4 26 183-208 23-48 (315)
431 3l0o_A Transcription terminati 94.9 0.032 1.1E-06 49.5 5.4 53 174-227 164-217 (427)
432 3fdi_A Uncharacterized protein 94.9 0.017 5.8E-07 46.2 3.4 23 185-207 7-29 (201)
433 4dkx_A RAS-related protein RAB 94.9 0.02 6.8E-07 46.2 3.8 23 185-207 14-36 (216)
434 3gj0_A GTP-binding nuclear pro 94.8 0.012 4.1E-07 47.0 2.3 24 184-207 15-39 (221)
435 4djt_A GTP-binding nuclear pro 94.8 0.0061 2.1E-07 48.5 0.5 25 183-207 10-34 (218)
436 2ohf_A Protein OLA1, GTP-bindi 94.8 0.014 4.8E-07 51.8 2.8 23 185-207 23-45 (396)
437 1sky_E F1-ATPase, F1-ATP synth 94.7 0.029 1E-06 50.7 4.8 40 186-227 153-192 (473)
438 3ld9_A DTMP kinase, thymidylat 94.7 0.021 7.2E-07 46.6 3.4 26 183-208 20-45 (223)
439 3llm_A ATP-dependent RNA helic 94.6 0.026 8.7E-07 45.8 3.9 32 172-205 66-97 (235)
440 3t34_A Dynamin-related protein 94.6 0.019 6.4E-07 49.9 3.3 25 183-207 33-57 (360)
441 1a5t_A Delta prime, HOLB; zinc 94.6 0.033 1.1E-06 47.9 4.7 40 169-208 8-48 (334)
442 2axn_A 6-phosphofructo-2-kinas 94.6 0.02 6.7E-07 52.6 3.5 26 183-208 34-59 (520)
443 1g8f_A Sulfate adenylyltransfe 94.6 0.03 1E-06 51.2 4.6 41 168-208 377-419 (511)
444 2qmh_A HPR kinase/phosphorylas 94.6 0.022 7.4E-07 45.9 3.2 24 185-208 35-58 (205)
445 1bif_A 6-phosphofructo-2-kinas 94.5 0.02 6.8E-07 51.7 3.3 26 183-208 38-63 (469)
446 1fx0_B ATP synthase beta chain 94.5 0.076 2.6E-06 48.3 7.0 59 176-236 156-216 (498)
447 4a1f_A DNAB helicase, replicat 94.3 0.051 1.7E-06 47.1 5.2 58 172-236 36-93 (338)
448 2vf7_A UVRA2, excinuclease ABC 94.3 0.0091 3.1E-07 57.9 0.5 21 186-206 525-546 (842)
449 4ag6_A VIRB4 ATPase, type IV s 94.2 0.034 1.2E-06 48.7 4.1 24 185-208 36-59 (392)
450 3io5_A Recombination and repai 94.2 0.12 4E-06 44.6 7.1 45 185-230 29-73 (333)
451 1xp8_A RECA protein, recombina 94.1 0.043 1.5E-06 48.1 4.5 42 185-229 75-116 (366)
452 4dcu_A GTP-binding protein ENG 94.1 0.022 7.5E-07 51.2 2.5 25 184-208 23-47 (456)
453 2ygr_A Uvrabc system protein A 94.1 0.015 5.2E-07 57.1 1.6 19 186-204 670-688 (993)
454 3l0i_B RAS-related protein RAB 94.0 0.0069 2.4E-07 47.6 -0.8 25 183-207 32-56 (199)
455 1u0j_A DNA replication protein 94.0 0.07 2.4E-06 44.7 5.3 36 172-207 90-127 (267)
456 1zcb_A G alpha I/13; GTP-bindi 94.0 0.032 1.1E-06 48.8 3.3 22 183-204 32-53 (362)
457 2dy1_A Elongation factor G; tr 94.0 0.032 1.1E-06 52.8 3.5 25 183-207 8-32 (665)
458 3hdt_A Putative kinase; struct 93.8 0.042 1.4E-06 44.7 3.5 26 183-208 13-38 (223)
459 2x2e_A Dynamin-1; nitration, h 93.8 0.043 1.5E-06 47.5 3.7 39 170-208 11-55 (353)
460 3ec1_A YQEH GTPase; atnos1, at 93.8 0.064 2.2E-06 46.9 4.9 39 166-207 147-185 (369)
461 2r8r_A Sensor protein; KDPD, P 93.7 0.04 1.4E-06 45.1 3.2 22 185-206 7-28 (228)
462 3ch4_B Pmkase, phosphomevalona 93.7 0.042 1.4E-06 44.1 3.3 26 183-208 10-35 (202)
463 1m8p_A Sulfate adenylyltransfe 93.7 0.053 1.8E-06 50.3 4.4 26 183-208 395-420 (573)
464 3o47_A ADP-ribosylation factor 93.7 0.026 8.9E-07 48.5 2.2 25 183-207 164-188 (329)
465 1x6v_B Bifunctional 3'-phospho 93.7 0.039 1.3E-06 51.8 3.4 26 183-208 51-76 (630)
466 3dpu_A RAB family protein; roc 93.6 0.081 2.8E-06 48.4 5.5 26 183-208 40-65 (535)
467 3q5d_A Atlastin-1; G protein, 93.6 0.054 1.9E-06 48.7 4.2 27 181-207 64-90 (447)
468 4ad8_A DNA repair protein RECN 93.6 0.018 6.1E-07 52.7 1.0 24 184-207 60-83 (517)
469 2r6f_A Excinuclease ABC subuni 93.6 0.016 5.3E-07 56.9 0.6 19 186-204 652-670 (972)
470 2gks_A Bifunctional SAT/APS ki 93.5 0.074 2.5E-06 49.0 5.0 26 183-208 371-396 (546)
471 1f5n_A Interferon-induced guan 93.5 0.063 2.1E-06 50.0 4.5 28 181-208 35-62 (592)
472 3e1s_A Exodeoxyribonuclease V, 93.5 0.068 2.3E-06 49.6 4.7 33 174-208 196-228 (574)
473 3h2y_A GTPase family protein; 93.4 0.083 2.8E-06 46.2 5.0 40 166-208 145-184 (368)
474 2q6t_A DNAB replication FORK h 93.4 0.051 1.8E-06 48.6 3.6 57 172-234 190-246 (444)
475 3c5h_A Glucocorticoid receptor 93.4 0.045 1.5E-06 45.0 3.1 23 184-206 19-50 (255)
476 2wkq_A NPH1-1, RAS-related C3 93.4 0.048 1.6E-06 46.0 3.3 26 183-208 154-179 (332)
477 3vr4_A V-type sodium ATPase ca 93.3 0.11 3.9E-06 48.0 5.8 56 175-235 222-279 (600)
478 4i1u_A Dephospho-COA kinase; s 93.2 0.045 1.5E-06 44.2 2.7 24 183-206 8-31 (210)
479 3mfy_A V-type ATP synthase alp 93.1 0.14 4.7E-06 47.3 6.1 56 175-235 217-274 (588)
480 2qpt_A EH domain-containing pr 93.0 0.059 2E-06 49.8 3.4 25 184-208 65-89 (550)
481 1p6x_A Thymidine kinase; P-loo 92.9 0.065 2.2E-06 46.4 3.4 25 184-208 7-31 (334)
482 3geh_A MNME, tRNA modification 92.9 0.061 2.1E-06 48.6 3.3 24 185-208 225-248 (462)
483 3fkq_A NTRC-like two-domain pr 92.6 0.076 2.6E-06 46.3 3.6 26 183-208 142-168 (373)
484 2h5e_A Peptide chain release f 92.6 0.073 2.5E-06 48.9 3.6 25 183-207 12-36 (529)
485 2gk6_A Regulator of nonsense t 92.6 0.15 5.2E-06 47.6 5.8 48 186-236 197-244 (624)
486 2zts_A Putative uncharacterize 92.6 0.071 2.4E-06 42.9 3.1 21 185-205 31-51 (251)
487 3tr5_A RF-3, peptide chain rel 92.6 0.072 2.5E-06 48.9 3.5 23 183-205 12-34 (528)
488 3cf2_A TER ATPase, transitiona 92.5 0.064 2.2E-06 51.7 3.2 46 163-208 477-535 (806)
489 3tqf_A HPR(Ser) kinase; transf 92.5 0.081 2.8E-06 41.6 3.2 21 186-206 18-38 (181)
490 1w36_D RECD, exodeoxyribonucle 92.5 0.14 4.8E-06 47.7 5.4 24 185-208 165-188 (608)
491 3bgw_A DNAB-like replicative h 92.4 0.097 3.3E-06 46.9 4.0 47 172-223 187-233 (444)
492 3io3_A DEHA2D07832P; chaperone 92.4 0.084 2.9E-06 45.8 3.5 28 181-208 15-42 (348)
493 3ug7_A Arsenical pump-driving 92.3 0.13 4.4E-06 44.6 4.5 36 173-208 14-50 (349)
494 4b3f_X DNA-binding protein smu 92.2 0.17 5.9E-06 47.4 5.7 61 169-236 192-253 (646)
495 3cio_A ETK, tyrosine-protein k 92.1 0.18 6.2E-06 42.6 5.2 28 181-208 101-129 (299)
496 3gqb_A V-type ATP synthase alp 92.1 0.17 5.7E-06 46.7 5.2 48 175-227 211-259 (578)
497 3pih_A Uvrabc system protein A 92.1 0.061 2.1E-06 52.6 2.5 17 185-201 611-627 (916)
498 3sjy_A Translation initiation 92.1 0.081 2.8E-06 46.7 3.0 25 183-207 7-31 (403)
499 2oze_A ORF delta'; para, walke 92.1 0.076 2.6E-06 44.4 2.7 25 184-208 34-61 (298)
500 4dcu_A GTP-binding protein ENG 91.9 0.14 4.8E-06 45.9 4.5 42 166-207 170-218 (456)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.50 E-value=2.8e-14 Score=132.60 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred eecHHHHHHHHHHhcCC---cceEEEEEecCCCchhHHHHHHHh--hhccCCCCCCEEEEEEeCCCC--CHHHHHHHHh
Q 046124 166 VGLQLQLEHVWRCLEGE---SVGIVGLYGMGGVGKTTLLTHINN--KFLESPTNFNYVIWVVMSKDS--RLENIQETIG 237 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~---~~~vI~IvG~gGvGKTTLak~i~~--~~~~v~~~Fd~~~wV~vs~~~--~~~~i~~~Il 237 (238)
||++.++++|..+|..+ +.++|+|+||||+||||||+.+|+ +. .+..+|+.++||++++.+ +...++++|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 69999999999999654 678999999999999999999998 45 678999999999999986 8888888876
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.19 E-value=7.5e-12 Score=122.51 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=63.7
Q ss_pred cceecHHHHHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCE-EEEEEeCCCCCHHHHHHHHh
Q 046124 164 TVVGLQLQLEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNY-VIWVVMSKDSRLENIQETIG 237 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~-~~wV~vs~~~~~~~i~~~Il 237 (238)
..+||+..++.|..+|.+ +..++|+|+||||+||||||+.+|++. .+..+|++ ++||++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 349999999999999876 567899999999999999999999876 56678997 99999999999888777654
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.99 E-value=4.2e-10 Score=104.81 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=56.9
Q ss_pred CcceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhhccC-CCCC-CEEEEEEeCCCCCHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKFLES-PTNF-NYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~~~v-~~~F-d~~~wV~vs~~~~~~~i~~ 234 (238)
..+||++..++.|..+|.. +..++|+|+||||+||||||+.++++. .. ..+| +.++|+++++. +...++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4679999999999999974 467899999999999999999999865 33 5678 58999999876 3333433
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.89 E-value=1e-09 Score=109.35 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=54.2
Q ss_pred CcceecHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC-CEEEEEEeCCCCC
Q 046124 163 PTVVGLQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF-NYVIWVVMSKDSR 228 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F-d~~~wV~vs~~~~ 228 (238)
..+|||+.+++.|..+|. +++.++|+|+||||+||||||+.+|++......+| +.++||++++..+
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 457999999999999995 35788999999999999999999998752224445 5778999998654
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.38 E-value=1.8e-06 Score=63.73 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=59.2
Q ss_pred hhhHhhHhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH---HHHHHH
Q 046124 54 SIDGAIFNRCLDCFLGKAASIRNLQKNVVALETELGKLIEAKNDVVARVVNAERQQTMTRLNKVQGWLSRF---GKKVAK 130 (238)
Q Consensus 54 ~l~~v~~~~l~~~~~~e~~~~~~~~~~~~~L~~el~~l~~~l~d~~~~~~~a~~k~~~~~~~~~~~Wl~~~---~~~~~~ 130 (238)
+++.+ ++++.+++.+++..+.|++++++.|+++|+.|+++|.| ++.+..+..++.++.|+.++ ++.+..
T Consensus 2 ~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 2 AISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45667 89999999999999999999999999999999999999 66652015789999999873 344444
Q ss_pred HHHHH
Q 046124 131 KLRDA 135 (238)
Q Consensus 131 ~i~~i 135 (238)
-+++.
T Consensus 74 ~iD~f 78 (115)
T 3qfl_A 74 VVDKF 78 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 6
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.25 E-value=1.1e-06 Score=76.50 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=52.7
Q ss_pred CcceecHHHHHHHHHHhc----CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLE----GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~----~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
..++|++..++.+..++. .+....+.|+|++|+|||||++.+++......+.-...+|+..+...+...+...+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 467999999999999887 34556899999999999999999998662111101245677655555555555444
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.22 E-value=1.4e-06 Score=76.86 Aligned_cols=74 Identities=22% Similarity=0.155 Sum_probs=52.5
Q ss_pred CcceecHHHHHHHHHHh-c----C--CcceEEEE--EecCCCchhHHHHHHHhhhccCC---CCCC-EEEEEEeCCCCCH
Q 046124 163 PTVVGLQLQLEHVWRCL-E----G--ESVGIVGL--YGMGGVGKTTLLTHINNKFLESP---TNFN-YVIWVVMSKDSRL 229 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L-~----~--~~~~vI~I--vG~gGvGKTTLak~i~~~~~~v~---~~Fd-~~~wV~vs~~~~~ 229 (238)
..++|++.+++.+..+| . . .....+.| +|++|+|||||++.+++.. ... ..|+ ..+|+..+...+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 46799999999998887 3 2 23345656 9999999999999999876 211 1123 3567776676777
Q ss_pred HHHHHHHh
Q 046124 230 ENIQETIG 237 (238)
Q Consensus 230 ~~i~~~Il 237 (238)
..++..|+
T Consensus 101 ~~~~~~l~ 108 (412)
T 1w5s_A 101 YTILSLIV 108 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.12 E-value=2.2e-06 Score=73.70 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=44.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK 225 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~ 225 (238)
..++||+..++.+..++..+ ..+.|+|+.|+|||||++.+.+.. + .+|+.+..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeec
Confidence 46799999999999988765 599999999999999999999864 1 56776543
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=8.2e-06 Score=71.27 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=53.2
Q ss_pred CcceecHHHHHHHHHHhcC----Ccce--EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG----ESVG--IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~----~~~~--vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
..++|++..++.+..++.. +... .+.|+|++|+|||||++.+++.. ..... -..+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 4679999999999888864 3334 89999999999999999999977 22212 245677766766666666554
No 10
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.09 E-value=3.9e-06 Score=65.37 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=40.6
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.+...+.......+-|+|+.|+||||||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999987766678999999999999999998875
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.07 E-value=6e-06 Score=65.82 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=40.1
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.+..++.......+-|+|+.|+|||||++.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999987765569999999999999999998865
No 12
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.99 E-value=6.4e-06 Score=64.07 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=40.4
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..+..+...+......-+-|+|+.|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999987666678999999999999999998875
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.99 E-value=1.5e-05 Score=68.41 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=43.8
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCC
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSK 225 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~ 225 (238)
..++|++.+++.|.. +.. +++.|+|+.|+|||||++.+.+.. . . ..+|+....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchh
Confidence 467999999999999 766 599999999999999999999876 2 1 257887654
No 14
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.97 E-value=5.1e-06 Score=72.60 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=51.3
Q ss_pred CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccC---CCC--CCEEEEEEeCCCC-CHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLES---PTN--FNYVIWVVMSKDS-RLENI 232 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v---~~~--Fd~~~wV~vs~~~-~~~~i 232 (238)
..++|++..++.+..+|.. +....+.|+|++|+||||||+.+++..... ... ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 4679999999988876643 445689999999999999999999865111 011 2356777765554 55444
Q ss_pred HHHH
Q 046124 233 QETI 236 (238)
Q Consensus 233 ~~~I 236 (238)
...|
T Consensus 100 ~~~l 103 (384)
T 2qby_B 100 LSSL 103 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 15
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.97 E-value=4.5e-06 Score=64.95 Aligned_cols=39 Identities=26% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
...+...+..++ +++|+|++|+|||||++.+.+-. +..+
T Consensus 23 l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 23 EILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp HHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred HhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 333333344556 99999999999999999999876 4444
No 16
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.97 E-value=8.9e-06 Score=70.80 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred CcceecHHHHHHHHHHhcC----CcceEEEEEecCCCchhHHHHHHHhhhccCC---CCCCEEEEEEeCCCCCHHHHHHH
Q 046124 163 PTVVGLQLQLEHVWRCLEG----ESVGIVGLYGMGGVGKTTLLTHINNKFLESP---TNFNYVIWVVMSKDSRLENIQET 235 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~----~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~---~~Fd~~~wV~vs~~~~~~~i~~~ 235 (238)
..++|++..++.+..+|.. +....+.|+|++|+||||||+.+++...... +.--..+|+..+...+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 4679999999999998843 4556899999999999999999998651100 00124567776666666555554
Q ss_pred H
Q 046124 236 I 236 (238)
Q Consensus 236 I 236 (238)
|
T Consensus 99 l 99 (387)
T 2v1u_A 99 I 99 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.82 E-value=1.4e-05 Score=64.28 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=39.3
Q ss_pred CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.+..++..+. ...+.|+|++|+|||||++.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999887653 3578999999999999999998876
No 18
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.81 E-value=2e-05 Score=63.53 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+.|...+.. ....+|+|+|++|+|||||++.|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556666543 345699999999999999999999876
No 19
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.80 E-value=1.1e-05 Score=65.65 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCC
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFN 216 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd 216 (238)
+|....++++ ..++ +++|+|+||+|||||++.+.+- .+..+...
T Consensus 10 ~g~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 10 LGQKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HhHHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 5554445543 4566 9999999999999999999987 45555554
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=1.5e-05 Score=69.20 Aligned_cols=46 Identities=30% Similarity=0.336 Sum_probs=37.3
Q ss_pred CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+.. +....+.|+|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4568888888888777653 233579999999999999999999976
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.73 E-value=1.5e-05 Score=65.47 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 29 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGE--FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTC--EEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 445 99999999999999999999865
No 22
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.72 E-value=1.8e-05 Score=63.72 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.3
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.|.+-.
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 34455 99999999999999999998865
No 23
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.71 E-value=1.7e-05 Score=65.70 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...++++...+..+. +|+|.|++|+|||||++.+.+..
T Consensus 12 ~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence 334555555454444 99999999999999999998754
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.71 E-value=1.6e-05 Score=65.78 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 30 ~Ge--~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGE--FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence 345 99999999999999999999865
No 25
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=2.6e-05 Score=61.11 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 168 LQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 168 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....++.+..++.+ .....+.|+|++|+|||||++.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555555543 234589999999999999999999876
No 26
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.70 E-value=1.7e-05 Score=64.62 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 13 l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 344444455555 89999999999999999999865
No 27
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.67 E-value=3.9e-05 Score=67.13 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCCccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 161 IEPTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 161 ~~~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+.++ ....++.+ .-+..++ +++|+|+||+|||||++.|.+..
T Consensus 50 ~l~~~~~tg~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 50 VIDQPFILGVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CCCSEECCSCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccceecCCCCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 3344455 23455555 4455667 99999999999999999999976
No 28
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=2.5e-05 Score=66.33 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=40.3
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.+..++..+....+-|+|+.|+||||+|+.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3578999999999999988765559999999999999999998875
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.67 E-value=1.9e-05 Score=66.39 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 31 ~Ge--~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGD--VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 455 99999999999999999999865
No 30
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.66 E-value=2e-05 Score=65.38 Aligned_cols=26 Identities=42% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|++-.
T Consensus 31 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQ--IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 455 99999999999999999999865
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.66 E-value=2e-05 Score=66.07 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.8
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|.+-.
T Consensus 31 ~~Ge--~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGD--VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3455 99999999999999999999865
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.65 E-value=1.8e-05 Score=64.62 Aligned_cols=26 Identities=38% Similarity=0.614 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.+++-.
T Consensus 34 ~Ge--~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGN--VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTC--CEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 455 99999999999999999999865
No 33
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.65 E-value=2.1e-05 Score=66.61 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.7
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|.+-.
T Consensus 32 ~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGE--VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTS--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHHcCC
Confidence 3456 99999999999999999999865
No 34
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.64 E-value=2.2e-05 Score=66.11 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 49 ~Ge--i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGE--VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEEcCCCCcHHHHHHHHHcCC
Confidence 445 99999999999999999999865
No 35
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=2.4e-05 Score=62.32 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|++|+|||||++.+.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 389999999999999999998753
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.64 E-value=2.3e-05 Score=64.93 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 99999999999999999999865
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.64 E-value=2.5e-05 Score=65.20 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.++ +++|+|+||+|||||++.|.+-
T Consensus 28 ~Ge--~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGE--VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 455 9999999999999999999984
No 38
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.63 E-value=2.6e-05 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.9
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|.+-.
T Consensus 35 ~~Ge--~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGE--MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTC--EEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCC--EEEEECCCCCcHHHHHHHHhcCC
Confidence 3456 99999999999999999999865
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.63 E-value=2.4e-05 Score=64.41 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 33 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQ--LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 345 99999999999999999999866
No 40
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.63 E-value=2.6e-05 Score=65.75 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.1
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..++ +++|+|+||+|||||++.|++-
T Consensus 44 ~~Ge--~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGE--VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTC--EEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 3455 9999999999999999999985
No 41
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.62 E-value=2.4e-05 Score=65.56 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|++-.
T Consensus 40 ~Ge--i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGE--IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhcCC
Confidence 455 99999999999999999999865
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.61 E-value=2.6e-05 Score=64.71 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|+||+|||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 599999999999999999999865
No 43
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.61 E-value=3.1e-05 Score=61.02 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|++|+|||||++.+.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998763
No 44
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.61 E-value=2.6e-05 Score=66.18 Aligned_cols=27 Identities=41% Similarity=0.484 Sum_probs=23.9
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|++-.
T Consensus 45 ~~Ge--~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGD--KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTC--EEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 3456 99999999999999999999865
No 45
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.60 E-value=2.8e-05 Score=64.55 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.|++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 99999999999999999999865
No 46
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.60 E-value=2.7e-05 Score=65.00 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 99999999999999999999865
No 47
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.60 E-value=2.8e-05 Score=64.79 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 34 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGE--VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 455 99999999999999999999865
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=5.3e-05 Score=65.57 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+..+....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999988875459999999999999999998865
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.58 E-value=3e-05 Score=65.31 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|++-.
T Consensus 32 ~Ge--~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGE--CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 345 99999999999999999999865
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=5.7e-05 Score=64.23 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=40.3
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+..++..+....+-|+|+.|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999999999999987765569999999999999999999874
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.58 E-value=3.1e-05 Score=64.76 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 30 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGD--ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 445 99999999999999999999865
No 52
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=3.1e-05 Score=65.43 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|++-.
T Consensus 44 ~Ge--~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGK--VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 445 99999999999999999999865
No 53
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=3.4e-05 Score=66.74 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred CcceecHHHHHHHHHHh-cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCL-EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L-~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++ ..+....+.|+|++|+|||||++.+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999888 66654449999999999999999998853
No 54
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.56 E-value=2.9e-05 Score=60.70 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.1
Q ss_pred eEEEEEecCCCchhHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHI 204 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i 204 (238)
.+++|+|++|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 39999999999999999953
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=4.6e-05 Score=65.69 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=39.8
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+..++..+....+-|+|++|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988754459999999999999999998864
No 56
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.56 E-value=4.2e-05 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999775
No 57
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.56 E-value=3.4e-05 Score=64.76 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+-.
T Consensus 45 ~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGT--TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhccC
Confidence 345 99999999999999999999865
No 58
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.55 E-value=8.9e-05 Score=59.37 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++.+.+.+.. ....+|+|.|++|+|||||++.+.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666653 345799999999999999999998765
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.55 E-value=6.6e-05 Score=64.53 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...++.+...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 345666666666677 99999999999999999998754
No 60
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=7.7e-05 Score=62.58 Aligned_cols=46 Identities=28% Similarity=0.376 Sum_probs=37.4
Q ss_pred CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+.. ....-+-|+|++|+||||||+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999988888777632 234579999999999999999999865
No 61
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.48 E-value=5.2e-05 Score=64.74 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 99999999999999999999865
No 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.47 E-value=9.9e-05 Score=55.98 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=33.4
Q ss_pred cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|....+..+...+.. ....-|-|+|+.|+|||+||+.|++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 457888888888776642 222247899999999999999999865
No 63
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.46 E-value=0.00011 Score=66.23 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=32.2
Q ss_pred Cccee-cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVG-LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG-~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ ....++.+ .-+..++ +++|+|++|+|||||++.|.+..
T Consensus 138 ~~~~~tg~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 138 EHVLDTGVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CSBCCCSCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceecCCCceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 34454 23455665 4455667 99999999999999999999876
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00011 Score=62.27 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=34.6
Q ss_pred cceecHHHHHHHHHHhc---------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE---------------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~---------------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..++.+...+. .....-+-|+|+.|+||||||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46888887777765543 2234468999999999999999888765
No 65
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.45 E-value=6e-05 Score=63.31 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++++. +..++ +++|+|++|+|||||++.+.+..
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhC
Confidence 3455554 44455 99999999999999999998865
No 66
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.45 E-value=0.0001 Score=62.87 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=36.4
Q ss_pred CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+.. .....|.|+|++|+||||||+.+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3578888888877766531 234579999999999999999999865
No 67
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.44 E-value=6.4e-05 Score=66.03 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 29 ~Ge--~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGE--ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTC--EEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCC--EEEEECCCCchHHHHHHHHhcCC
Confidence 345 99999999999999999999865
No 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.44 E-value=5.8e-05 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...++|+|++|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999999977
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.43 E-value=0.00015 Score=58.67 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++.+..++.......+-|+|++|+||||||+.+++..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4666777776665555689999999999999999999876
No 70
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.43 E-value=6.7e-05 Score=61.35 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|++|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 399999999999999999999876
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=6.9e-05 Score=61.30 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCcceEEEEEecCCCchhHHHHHHH
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~ 205 (238)
.++ +++|+|+||+|||||++.+.
T Consensus 29 ~G~--~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGT--TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHH
T ss_pred CCc--EEEEEeCCCCCHHHHHHHHH
Confidence 345 99999999999999999988
No 72
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.00014 Score=61.48 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.0
Q ss_pred CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+.. ....-+-|+|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4678999888888776631 124578999999999999999999865
No 73
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.42 E-value=7.3e-05 Score=59.73 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+|||||++.+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34599999999999999999998765
No 74
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.42 E-value=6.9e-05 Score=61.83 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999543
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.42 E-value=6.6e-05 Score=64.69 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+|||||++.|.+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 44599999999999999999999876
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=6.3e-05 Score=58.24 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+|+|+|++|+|||||++.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.41 E-value=6.4e-05 Score=63.26 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|+||+|||||++.|++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999999864
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.41 E-value=0.00032 Score=56.50 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=30.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhcc--CCC-CCCEEEEEEeCCCCCH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLE--SPT-NFNYVIWVVMSKDSRL 229 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~--v~~-~Fd~~~wV~vs~~~~~ 229 (238)
.+++|+|++|+|||||++.+.+.... ..+ .-...+|+.-...+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 39999999999999999999874311 111 2335777765444443
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.00014 Score=61.40 Aligned_cols=45 Identities=27% Similarity=0.246 Sum_probs=32.2
Q ss_pred CcceecHHHHHHHHHHhc----C---------C-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE----G---------E-SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~----~---------~-~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++.|.++.++.|...+. . . ... +.++|++|+|||||++.|.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc
Confidence 355677777777765432 1 1 122 9999999999999999999976
No 80
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.41 E-value=7.3e-05 Score=65.60 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.7
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|+||+|||||++.|.+-.
T Consensus 39 ~~Ge--~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGE--MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTC--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 3455 99999999999999999999865
No 81
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.39 E-value=0.00015 Score=65.81 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=39.5
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..+..+...|......-+-|+|++|+||||||+.++...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999976544567899999999999999998875
No 82
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.39 E-value=0.00015 Score=57.70 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCC----cceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 170 LQLEHVWRCLEGE----SVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 170 ~~~~~l~~~L~~~----~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
..++.+..++... ....+-|+|++|+||||||+.+++.. .. ....++|++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~~--~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-AK--RNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-HT--TTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEEh
Confidence 3455555565433 12589999999999999999999977 22 2234566654
No 83
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.38 E-value=0.00011 Score=58.75 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.7
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|+|++|+|||||++.+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344599999999999999999998876
No 84
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.38 E-value=8.2e-05 Score=65.39 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 99999999999999999999865
No 85
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.37 E-value=8.5e-05 Score=65.35 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 99999999999999999999865
No 86
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.36 E-value=8.9e-05 Score=65.63 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 28 ~Ge--~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGE--FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCC--EEEEEcCCCchHHHHHHHHHcCC
Confidence 345 99999999999999999999865
No 87
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.36 E-value=9e-05 Score=65.22 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=24.2
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|+||+|||||++.|.+-.
T Consensus 51 i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQ--IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCC--EEEEEcCCCchHHHHHHHHhcCC
Confidence 33456 99999999999999999999865
No 88
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.36 E-value=9e-05 Score=65.43 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 28 ~Ge--~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGE--FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCC--EEEEECCCCcHHHHHHHHHHcCC
Confidence 345 99999999999999999999865
No 89
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.35 E-value=0.00012 Score=66.11 Aligned_cols=46 Identities=30% Similarity=0.339 Sum_probs=39.8
Q ss_pred CcceecHHHH---HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQL---EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~---~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+ ..+...+..+....+-|+|+.|+||||||+.|.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678998888 677888877777789999999999999999999865
No 90
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=0.00013 Score=60.36 Aligned_cols=46 Identities=26% Similarity=0.196 Sum_probs=33.9
Q ss_pred CcceecHHHHHHHHHHh---cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCL---EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+ .. .-..-|.|+|++|+||||||+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46788887777665443 22 113358899999999999999999876
No 91
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.35 E-value=9.9e-05 Score=58.68 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|++|+|||||++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 389999999999999999997654
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.34 E-value=9.5e-05 Score=65.28 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 36 ~Ge--~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGE--FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCC--EEEEECCCCChHHHHHHHHHcCC
Confidence 345 99999999999999999999865
No 93
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.34 E-value=7.2e-05 Score=65.48 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 99999999999999999999865
No 94
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.00013 Score=58.27 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|.|+|+.|+||||+++.+....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 389999999999999999998765
No 95
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.33 E-value=0.0002 Score=59.02 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=34.3
Q ss_pred CcceecHHHHHHHHHHh---cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCL---EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+..++ .. ....-|-|+|+.|+||||||+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788887777765543 22 123457899999999999999999876
No 96
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.33 E-value=0.00014 Score=62.45 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.+.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4599999999999999999999876
No 97
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.32 E-value=7.3e-05 Score=64.31 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 79 ~Ge--~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQ--TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTC--EEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCchHHHHHHHHHcCC
Confidence 345 99999999999999999998865
No 98
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.32 E-value=0.00014 Score=61.61 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=39.8
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..++..+....+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3578999999999999887765559999999999999999998864
No 99
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.31 E-value=7.8e-05 Score=60.88 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=16.0
Q ss_pred eEEEEEecCCCchhHHHHHHH-hhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN-NKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~-~~~ 208 (238)
.+|+|+|++|+|||||++.+. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 389999999999999999999 643
No 100
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.31 E-value=6.6e-05 Score=65.85 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.|.+-.
T Consensus 30 ~Ge--~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGE--RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTC--EEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 345 99999999999999999999865
No 101
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.31 E-value=0.00013 Score=56.70 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+|+|+|++|+|||||++.+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 58999999999999999998764
No 102
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=65.80 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=30.6
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+|... +..+...+..+..-.++|+|++|+|||||++.|++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44434 777777777777333999999999999999999885
No 103
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.30 E-value=0.00041 Score=59.05 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=37.3
Q ss_pred CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+.....+..++.. .....+-|+|+.|+||||||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999888888777652 233578899999999999999999876
No 104
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.30 E-value=0.00021 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+.+|||.|++|+|||||++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998765
No 105
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.30 E-value=0.00024 Score=61.62 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+|||||++.+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 106
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00012 Score=62.67 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++|+|+||+|||||++.+.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999876
No 107
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.00013 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+||+|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999998775
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0003 Score=60.73 Aligned_cols=44 Identities=5% Similarity=0.067 Sum_probs=37.7
Q ss_pred ceecHHHHHHHHHHhc----CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 165 VVGLQLQLEHVWRCLE----GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 165 ~vG~~~~~~~l~~~L~----~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.||+.+++.+...|. .+....+-|+|++|+|||++++.|.++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5789988888877665 4566789999999999999999999987
No 109
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.27 E-value=0.00017 Score=61.04 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=36.4
Q ss_pred cceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..++.+...+... ....+.++|++|+||||||+.+.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4578888888887776542 13579999999999999999999876
No 110
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.26 E-value=0.00025 Score=60.70 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.7
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|+|++|+|||||++.+.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344699999999999999999999865
No 111
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.26 E-value=0.00016 Score=66.80 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=26.8
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+..++ +++|+|+||+|||||++.|.+...+..+.
T Consensus 44 i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 34556 99999999999999999999865333333
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00094 Score=54.21 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=33.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENI 232 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i 232 (238)
.++.|+|++|+|||||++.+.... .... .-..++|+.....++...+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 399999999999999999998853 1111 1346788877665554433
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0002 Score=64.96 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 175 VWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 175 l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+..++ +++|+|++|+|||||++.|++-.
T Consensus 131 vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCC--EEEEECCCCCCHHHHHHHHhCcc
Confidence 333344556 99999999999999999999864
No 114
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.23 E-value=0.00016 Score=63.44 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...+..++ .++|+|++|+|||||++.+.+..
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 44555555666 89999999999999999999865
No 115
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.22 E-value=0.00016 Score=64.21 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.5
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ +++|+|++|+|||||++.|.+-.
T Consensus 45 ~~Ge--~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQ--RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTC--EEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCC--EEEEECCCCChHHHHHHHHhCCC
Confidence 3456 99999999999999999999854
No 116
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00029 Score=64.63 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.2
Q ss_pred CcceecHHHHHHHHHHhcC-----------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-----------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+..+|.. +..+.+-|+|+.|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999998865 123689999999999999999999865
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.00045 Score=55.26 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=32.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQ 233 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~ 233 (238)
.++.|+|++|+|||||++.+.. . . =..++|++....++...+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 3999999999999999999987 3 1 1357788776655655544
No 118
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.21 E-value=0.00037 Score=61.05 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=31.6
Q ss_pred eecHHHHHHHHHHh----cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCL----EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L----~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+...+.++..+ ..+....|.|+|++|+|||||++.+.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34445555555544 35666679999999999999999988754
No 119
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00021 Score=67.05 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.1
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhhccCCCCC
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNF 215 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~F 215 (238)
.++ +++|+|+||+|||||++.|.+-..+..+.+
T Consensus 102 ~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 102 PGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCC--EEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 345 999999999999999999999764455554
No 120
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.20 E-value=0.00029 Score=61.04 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=39.0
Q ss_pred CcceecHHHHHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|++..++.+...+..+. ...+-|+|+.|+||||||+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999887654 3468899999999999999998865
No 121
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.20 E-value=0.00029 Score=60.57 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=37.9
Q ss_pred CcceecHHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+..++.. .....|-|+|+.|+||||||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4679999988888887753 344578999999999999999998865
No 122
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.00021 Score=61.99 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+.+...+..++ .++|+|++|+|||||++.+.+..
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3455555555566 89999999999999999999865
No 123
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.19 E-value=0.0002 Score=66.24 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.5
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++|+|+||+|||||++.|++...+..+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 99999999999999999999976334444
No 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.19 E-value=0.00029 Score=59.35 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=36.8
Q ss_pred CcceecHHHHHHHHHHhcC--------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG--------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+.. ....-+-++|+.|+||||||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999888888776643 123468899999999999999999876
No 125
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.17 E-value=0.0003 Score=65.81 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=39.3
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+..+. .+.|+|++|+||||||+.|.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccC
Confidence 356899999999988888876 89999999999999999999865
No 126
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.0002 Score=66.15 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=24.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+++|+|+||+|||||+|.|.+...+..+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 39999999999999999999986533444
No 127
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.17 E-value=0.00035 Score=59.53 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=24.1
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+|+|+|+.|+|||||++.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998766
No 128
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.17 E-value=0.00035 Score=61.02 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=37.2
Q ss_pred CcceecHHHHHHHHHHhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+. .....-|-|+|+.|+||||||+.+++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899988888877763 1234578999999999999999999865
No 129
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.17 E-value=0.0002 Score=59.49 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchhHHHHHHHh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.+|+|+|++|+|||||++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999999984
No 130
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.17 E-value=0.00049 Score=59.71 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred CcceecHHHHHH---HHHHhcCCcc--eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEH---VWRCLEGESV--GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~---l~~~L~~~~~--~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..... +...+..+.. ..+-|+|+.|+||||||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999887665 4555555432 489999999999999999999987
No 131
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.16 E-value=0.0002 Score=62.85 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|+||+|||||++.+.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4599999999999999999999876
No 132
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00018 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|.|++|+|||||++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00041 Score=59.78 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=35.9
Q ss_pred CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|...+.. ...+-|-++|+.|+||||||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4678888888888765521 123578899999999999999999865
No 134
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.14 E-value=0.00024 Score=56.07 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|++|+|||||++.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998754
No 135
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.13 E-value=0.00024 Score=59.27 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=31.1
Q ss_pred ecHHHHHHHHHHhcC---CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 167 GLQLQLEHVWRCLEG---ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 167 G~~~~~~~l~~~L~~---~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+....++++...+.. +. +|+|+|+.|+||||+++.+.+..
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 444567777666665 55 89999999999999999998865
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.13 E-value=0.00046 Score=59.28 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=37.0
Q ss_pred CcceecHHHHHHHHHHhc----------C--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE----------G--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~----------~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|...+. . ....-|-++|+.|+|||+||+.+++..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999888887762 1 123468999999999999999999876
No 137
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.12 E-value=0.00024 Score=66.64 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.6
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+++|+|+||+|||||++.|.+...+..+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 99999999999999999999976334444
No 138
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.12 E-value=0.00026 Score=66.41 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=26.8
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCC
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTN 214 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~ 214 (238)
+..++ +++|+|+||+|||||++.|.+...+..+.
T Consensus 114 i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 114 VKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 34455 99999999999999999999865334443
No 139
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.00024 Score=65.70 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=24.0
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
+++|+|+||+|||||++.|++-..+..+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999997633334
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00028 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998753
No 141
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.09 E-value=0.00026 Score=61.60 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+++|+|++|+|||||++.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34599999999999999999998644
No 142
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.08 E-value=0.00028 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+.+|+|+||+|||||++.|+.-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999753
No 143
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.08 E-value=0.00029 Score=59.58 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.+..-+..++ +++|+|++|+|||||++.+....
T Consensus 25 Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 25 INDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHH
Confidence 455554455566 99999999999999999998876
No 144
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.08 E-value=0.00053 Score=55.20 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+.+-..+......+|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555555567899999999999999999988764
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.07 E-value=0.00025 Score=58.53 Aligned_cols=22 Identities=41% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEecCCCchhHHHHHHHhhh
Q 046124 187 VGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 187 I~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.|+|++|+|||||++.+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 146
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.07 E-value=0.00026 Score=62.02 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 147
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.00039 Score=67.63 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=40.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..+..++..|......-+.++|++|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987655568899999999999999998865
No 148
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.00018 Score=54.37 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=31.7
Q ss_pred cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+.....+...+.. ....-|-|+|+.|+|||+||+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 457887777777666542 122247799999999999999998754
No 149
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.05 E-value=0.00031 Score=56.50 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|++|+|||||++.+.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998765
No 150
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.04 E-value=0.00025 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|++|+|||||++.+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 399999999999999999998654
No 151
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00042 Score=55.63 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=32.3
Q ss_pred ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+...+.+...+......+|+|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555666555555567899999999999999999988764
No 152
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.02 E-value=0.00058 Score=61.05 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++|+|++|+|||||++.+.+-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4499999999999999999999843
No 153
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.02 E-value=0.00059 Score=65.43 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=39.6
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..++.+...|......-+-++|++|+||||+|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999976544467899999999999999998864
No 154
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.01 E-value=0.00033 Score=63.95 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|+||+|||||++.|.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34699999999999999999999876
No 155
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.00 E-value=0.00056 Score=62.63 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=37.6
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+..+. -|-++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 356899998888887777665 68899999999999999999865
No 156
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.00 E-value=0.0008 Score=60.23 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=23.6
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|+|++|+|||||++.+.+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 334599999999999999999999876
No 157
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.00 E-value=0.00026 Score=57.89 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+|+|.|++|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 359999999999999999999874
No 158
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.99 E-value=0.0004 Score=59.61 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=37.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..+..+...+..+. -+-++|+.|+||||||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 356899888888877776654 68899999999999999998865
No 159
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.99 E-value=0.00049 Score=60.34 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|++|+|||||++.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 399999999999999999998765
No 160
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.99 E-value=0.00017 Score=67.22 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++++...+..++ +++|+|++|+|||||++.+.+-.
T Consensus 358 ~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 358 ALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence 4445544455566 99999999999999999999865
No 161
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00047 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.|+|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00065 Score=56.33 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++.++..+.. ....+|.|+|++|+||||+++.+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445555444443 245789999999999999999998765
No 163
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.97 E-value=0.0005 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.7
Q ss_pred CcceEEEEEecCCCchhHHHHHHHh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
+...+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998864
No 164
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.97 E-value=0.00034 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 165
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.96 E-value=0.0005 Score=62.66 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|++|+|||||++.|.+-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 599999999999999999999865
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.96 E-value=0.00037 Score=58.48 Aligned_cols=46 Identities=28% Similarity=0.241 Sum_probs=31.9
Q ss_pred CcceecHHHHHHHHHHhc---CC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE---GE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~---~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+.....+..... .. -..=+.|+|++|+|||||++.|++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 356787766555544332 10 01128999999999999999999876
No 167
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.95 E-value=0.00081 Score=64.35 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=40.0
Q ss_pred CcceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|++..+..+...|......-+-|+|+.|+||||||+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987655578899999999999999998765
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.92 E-value=0.00074 Score=58.94 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=36.0
Q ss_pred CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|...+.. ...+-|-|+|+.|+||||||+.+++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3578998888888776621 122358899999999999999999876
No 169
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.91 E-value=0.0003 Score=58.39 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=33.0
Q ss_pred CcceecHHHHHHHHHHhc---C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE---G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~---~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+...+. . ....-+-|+|+.|+||||||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456888776666655443 1 112237799999999999999999875
No 170
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.90 E-value=0.00098 Score=56.51 Aligned_cols=39 Identities=31% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcC-----CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEG-----ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~-----~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++++..+.. ....+|.|.|++|+|||||++.+....
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555444433 245789999999999999999998754
No 171
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.00078 Score=61.85 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+.+...+..+. .|+|+|++|+|||||++.+.+..
T Consensus 249 ~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 4455555555565 69999999999999999999866
No 172
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.90 E-value=0.00069 Score=56.19 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=32.2
Q ss_pred cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+.....+...+.. ....-|-|+|+.|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 457887777777665532 222367799999999999999999865
No 173
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.89 E-value=0.00089 Score=58.99 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=37.2
Q ss_pred CcceecHHHHHHHHHHhcC------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+.. ....-|-|+|+.|+|||+||+.|.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999988887721 123578999999999999999998865
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.0012 Score=55.11 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=32.8
Q ss_pred cceecHHHHHHHHH-------Hhc---CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWR-------CLE---GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~-------~L~---~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|....++.+.. .+. .....-+-|+|+.|+||||||+.+++..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45666555555544 332 3455688999999999999999999865
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.87 E-value=0.001 Score=56.83 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=38.7
Q ss_pred CcceecHHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+.....+..++..+.. ..+-+.|+.|+||||+|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4678999999999999987643 466777889999999999999865
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.87 E-value=0.0014 Score=56.07 Aligned_cols=38 Identities=34% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+...+... ....+-|+|++|+||||||+.+++..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344444544443 34579999999999999999999876
No 177
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.87 E-value=0.001 Score=57.89 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred cceecHHHHHHHHHHhc-------------C--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE-------------G--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~-------------~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..++.+...+. . .....|-++|+.|+||||||+.|.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35888888888877762 1 133568999999999999999999865
No 178
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.86 E-value=0.00049 Score=64.10 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.+.+-.
T Consensus 368 ~G~--~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGK--TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTC--EEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhhcc
Confidence 345 99999999999999999999865
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.85 E-value=0.001 Score=59.90 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=36.6
Q ss_pred CcceecHHHHHHHHHHhc------------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLE------------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~------------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.|...+. ....+-|-|+|+.|+||||||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899988888877662 1133578999999999999999999865
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.85 E-value=0.00083 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.049 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.+.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3499999999999999999999854
No 181
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00058 Score=64.01 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCC
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPT 213 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~ 213 (238)
.+++|+|+||+|||||++.|.+-..+..+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 47999999999999999999987633333
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.82 E-value=0.00049 Score=58.79 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHHHHhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.|+|+|++|+|||||++.+++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5699999999999999999874
No 183
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.00072 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|.|+.|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997654
No 184
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.0018 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|.|+.|+||||+++.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 185
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.81 E-value=0.00068 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..|+|+|.+|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 186
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.81 E-value=0.00062 Score=58.10 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999998766
No 187
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.80 E-value=0.0006 Score=53.12 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|+|+.|+||||+++.+....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998654
No 188
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.80 E-value=0.00048 Score=64.30 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.+.+-.
T Consensus 369 ~G~--~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGS--VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTC--EEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCc
Confidence 345 99999999999999999999865
No 189
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.77 E-value=0.0023 Score=55.73 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=31.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhc--cCCCCC-CEEEEEEeCCCCCHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFL--ESPTNF-NYVIWVVMSKDSRLE 230 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~--~v~~~F-d~~~wV~vs~~~~~~ 230 (238)
-.++.|+|++|+|||||++.++.... +..+.. ..++|+.....+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 34999999999999999999988641 111111 245888765544333
No 190
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.76 E-value=0.0012 Score=58.00 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++|...+ .+. +++|+|++|+|||||++.+.+..
T Consensus 207 ~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 207 KPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHHHhc-CCC--EEEEECCCCccHHHHHHHHhccc
Confidence 3344433 445 89999999999999999999866
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.76 E-value=0.00034 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+|||||++.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 192
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.76 E-value=0.00082 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|.|+.|+||||+++.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
No 193
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.75 E-value=0.0007 Score=62.22 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHHHHHHH-HhcCCcceEEEEEecCCCchhHHHHH--HHhhh
Q 046124 170 LQLEHVWR-CLEGESVGIVGLYGMGGVGKTTLLTH--INNKF 208 (238)
Q Consensus 170 ~~~~~l~~-~L~~~~~~vI~IvG~gGvGKTTLak~--i~~~~ 208 (238)
..++++.. -+..++ +++|+|+||+|||||++. +.+-.
T Consensus 26 ~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 26 EGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45666655 556667 999999999999999999 44544
No 194
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.75 E-value=0.00076 Score=59.40 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.+.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3489999999999999999998765
No 195
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.75 E-value=0.0008 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999776
No 196
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.74 E-value=0.00083 Score=57.68 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred cceecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+.....+...+......-|-|+|+.|+||||||+.+.+..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 568888766655444443333348899999999999999999866
No 197
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.00094 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+|.|.|+.|+||||+++.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988653
No 198
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.73 E-value=0.0012 Score=56.30 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred cceecHHHHHHHHHHhcC--CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG--ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~--~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|....+..+...+.. ....-|-|+|+.|+|||+||+.|++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467888888877776643 223357799999999999999999865
No 199
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.00084 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 200
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.72 E-value=0.00092 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 201
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.72 E-value=0.00096 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|.|+.|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 202
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.71 E-value=0.00066 Score=63.47 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 99999999999999999999865
No 203
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.70 E-value=0.0017 Score=56.79 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=35.0
Q ss_pred CcceecHHHHHHHHHHhcC------------------------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG------------------------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~------------------------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+.. .....|-++|+.|+||||||+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568888888877766520 122468899999999999999999865
No 204
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.70 E-value=0.0014 Score=56.01 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++++...+. +. +++|+|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l~-G~--i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-GF--ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-TC--EEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-Cc--EEEEECCCCCCHHHHHHHHH-Hh
Confidence 344444443 34 89999999999999999998 54
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.70 E-value=0.00098 Score=50.90 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.+..|+|+||+|||||+..|+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999886
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0019 Score=58.13 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=35.0
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|...+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56788887777765543 1 134678999999999999999999976
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.66 E-value=0.00094 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.2
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++ ++.|+|++|+|||||+..+....
T Consensus 28 ~~G~--i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGT--VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445 99999999999999999998755
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.65 E-value=0.002 Score=57.94 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCc-ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGES-VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~-~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+........ ..-+.|+|++|+||||||+.|++..
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444332 5689999999999999999999865
No 209
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.65 E-value=0.00088 Score=65.83 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=22.6
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
+..++ +++|+|+||+|||||++.|.+
T Consensus 458 I~~Ge--~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRAR--RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTC--EEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhC
Confidence 33456 999999999999999999985
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.65 E-value=0.0017 Score=60.07 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=34.0
Q ss_pred cceecHHHHHHHHHHhc------CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE------GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~------~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|.+.....+...+. ......+.++|++|+||||||+.|.+..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46888877766644332 1234589999999999999999999866
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.00072 Score=65.39 Aligned_cols=45 Identities=29% Similarity=0.326 Sum_probs=34.9
Q ss_pred cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|.+..++.+..++.. .....|.|+|++|+||||||+.|.+..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 567887777777666531 234579999999999999999999865
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.64 E-value=0.0011 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.|+|+.|+||||+++.+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998765
No 213
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.64 E-value=0.0011 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|.|+.|+||||+++.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 214
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.63 E-value=0.00085 Score=65.93 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|+||+|||||++.|.+..
T Consensus 698 ~Ge--ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSS--RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTC--EEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 345 99999999999999999999865
No 215
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.62 E-value=0.0012 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|+.|+|||||+..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999988754
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0015 Score=58.63 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=35.4
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|.+.+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 56788888888766542 1 135678999999999999999999976
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.62 E-value=0.0025 Score=57.41 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=35.3
Q ss_pred CcceecHHHHHHHH---HHhcCC--cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVW---RCLEGE--SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~---~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+. ..+..+ ..+-+-++|++|+||||||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 46789988777554 344443 23468899999999999999999977
No 218
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.62 E-value=0.0012 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+++|+|+.|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999988764
No 219
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.60 E-value=0.00055 Score=63.68 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.+.+-.
T Consensus 366 ~G~--~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGE--TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTC--EEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCC--EEEEECCCCChHHHHHHHHhcCC
Confidence 445 99999999999999999999865
No 220
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.60 E-value=0.0012 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|+|+.|+||||+++.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.60 E-value=0.0012 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..|+|+|.+|+|||||++.+.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 222
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.58 E-value=0.0014 Score=50.48 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=27.0
Q ss_pred HHHHHHHhcC-CcceEEEEEecCCCchhHHHHHHHh
Q 046124 172 LEHVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 172 ~~~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
+..+...+.. .....|+|+|..|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3444444444 5667999999999999999999874
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0017 Score=58.20 Aligned_cols=45 Identities=33% Similarity=0.453 Sum_probs=34.9
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|...+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56788888877766543 1 134558899999999999999999976
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.57 E-value=0.0017 Score=59.02 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=33.5
Q ss_pred CcceecHHHHHHHHHHh---cCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCL---EGE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L---~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..++.+...+ ... -..-|.|+|++|+||||||+.|.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35788887766665443 221 12347899999999999999999876
No 225
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.0013 Score=52.32 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|.|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 226
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0014 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|.|.|+.|+||||+++.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998754
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.53 E-value=0.0013 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+|+|.|+.|+||||+++.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998754
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.53 E-value=0.0014 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|.|+.|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0013 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+..+-++|++|+|||+||+.|++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578889999999999999999876
No 230
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.002 Score=57.27 Aligned_cols=45 Identities=31% Similarity=0.357 Sum_probs=34.6
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|.+.+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45678888777766543 1 134568899999999999999999976
No 231
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.53 E-value=0.0015 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|+|..|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 232
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.52 E-value=0.0015 Score=53.92 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.1
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|.|+.|+||||+++.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999997754
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.51 E-value=0.0023 Score=58.55 Aligned_cols=46 Identities=28% Similarity=0.239 Sum_probs=33.0
Q ss_pred CcceecHHHHHHHHHH---hcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRC---LEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+..+..+... +.+. -..=|.|+|++|+||||||+.|++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678888766665443 3221 11238999999999999999999865
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.50 E-value=0.0013 Score=56.12 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 89999999999999999998865
No 235
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.50 E-value=0.00086 Score=62.53 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.+.+-.
T Consensus 368 ~Ge--~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGS--LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTC--EEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 99999999999999999999865
No 236
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.47 E-value=0.0012 Score=59.17 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|+|+|++|+|||||++.+++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46999999999999999999864
No 237
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.46 E-value=0.0017 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...+|+|.|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998765
No 238
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.46 E-value=0.0028 Score=56.80 Aligned_cols=43 Identities=35% Similarity=0.401 Sum_probs=34.0
Q ss_pred eecHHHHHHHHHHhcC-----------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEG-----------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~-----------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.++.++.+...+.+ ++...|+|+|.+|+|||||++.+.+..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 5777778887776641 134689999999999999999998764
No 239
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0033 Score=48.84 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+..+.. +.......|.|+|..|+|||||++.+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44566678999999999999999999853
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0016 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+||||+++.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999987643
No 241
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.43 E-value=0.0019 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++|-|.|++|+||||.|+.|....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 242
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.43 E-value=0.0022 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.9
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.....|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999999865
No 243
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.43 E-value=0.0019 Score=58.15 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.8
Q ss_pred CcceecHHHHHHHHHHhcC--------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG--------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+.. -..+-|-++|+.|+||||||+.+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678988888887655521 123568999999999999999999876
No 244
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.42 E-value=0.0019 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.++|.+|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999997654
No 245
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.37 E-value=0.002 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998754
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.37 E-value=0.0021 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|++|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998766
No 247
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.36 E-value=0.0008 Score=59.54 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|+||+|||||++.|+.-.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999997644
No 248
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0032 Score=56.92 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=35.3
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|.+.+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 56788888887766542 1 245678899999999999999999976
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.35 E-value=0.0043 Score=54.03 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=28.2
Q ss_pred HHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+...+. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444 3467799999999999999999987654
No 250
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.35 E-value=0.0022 Score=50.85 Aligned_cols=41 Identities=24% Similarity=0.139 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 168 LQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 168 ~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.....+.+.........-.|.|+|..|+|||||++.+.+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444444444445566789999999999999999888643
No 251
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.35 E-value=0.002 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|.+|+|||||++.+.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998763
No 252
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.34 E-value=0.002 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.++.+|+|+||+|||||+..|+-
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999998753
No 253
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.34 E-value=0.002 Score=56.45 Aligned_cols=22 Identities=45% Similarity=0.807 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.+.+|+|+||+|||||+..|+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4999999999999999999985
No 254
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.33 E-value=0.0029 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.1
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.....|+|+|.+|+|||||++.+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999999763
No 255
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.33 E-value=0.002 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCchhHHHHHHH
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~ 205 (238)
...+|+|.|+.|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999987
No 256
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.33 E-value=0.011 Score=52.43 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.8
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhc-c-C-CCCCCEEEEEEeCCCCCHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFL-E-S-PTNFNYVIWVVMSKDSRLENI 232 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~-~-v-~~~Fd~~~wV~vs~~~~~~~i 232 (238)
.++.|+|++|+|||||+..++-... + . .+.-..++|+.....++...+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 3999999999999999997652210 1 0 112346788876666655443
No 257
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.32 E-value=0.0021 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998876
No 258
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.32 E-value=0.0039 Score=56.86 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=35.7
Q ss_pred cceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..+..+..++.. ....-|-|+|+.|+|||+||+.|.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 568888888888776641 233468899999999999999998865
No 259
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.32 E-value=0.0022 Score=55.90 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+|||||++.+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999998743
No 260
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.31 E-value=0.025 Score=49.41 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=31.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL 229 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~ 229 (238)
-.++.|+|++|+|||||+..+....... + ..++|++....++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-g--g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-G--GVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEEecccccch
Confidence 3599999999999999999998765221 1 23577766555553
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0022 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 262
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.30 E-value=0.0024 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.|.|+.|+||||+++.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998755
No 263
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.29 E-value=0.0017 Score=60.20 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|+|++|+|||||++.|.+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 499999999999999999999876
No 264
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.28 E-value=0.00086 Score=57.60 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 99999999999999999998754
No 265
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.27 E-value=0.0003 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHhhh
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+++|+|++|+|||||++.|+.-.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999998866
No 266
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.0025 Score=47.91 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|..|+|||||++.+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998654
No 267
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.25 E-value=0.0025 Score=49.47 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999888754
No 268
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.24 E-value=0.0024 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|+|+|++|+|||||++.+.+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455699999999999999999997643
No 269
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.24 E-value=0.0019 Score=55.52 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.+.+|+|+||+|||||+..|+
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 389999999999999999998
No 270
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.24 E-value=0.0028 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|..|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0026 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~ 205 (238)
..+..|+|+||+||||++..|+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999999875
No 272
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.23 E-value=0.0022 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
-.|+|+|..|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 47999999999999999998653
No 273
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.22 E-value=0.0026 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998753
No 274
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.22 E-value=0.0013 Score=61.53 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=23.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++..|+|+|++|+|||||++.|.+-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 45679999999999999999999864
No 275
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.22 E-value=0.0027 Score=48.08 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.-.|.|+|..|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4589999999999999999998653
No 276
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.20 E-value=0.0028 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.-.|.|+|..|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998764
No 277
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.18 E-value=0.0026 Score=55.72 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.2
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
++..|+|+||+|||||+..|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999987
No 278
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.18 E-value=0.003 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|+|+|..|+|||||++.+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998654
No 279
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.17 E-value=0.0029 Score=48.35 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45689999999999999999987653
No 280
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.16 E-value=0.0027 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|.+|+|||||++.+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999999864
No 281
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0042 Score=55.68 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=34.4
Q ss_pred cceecHHHHHHHHHHhc----C---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLE----G---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.++.++.|.+.+. . ..++=|-++||+|+|||+||+.|.++.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 45677877777765442 1 134579999999999999999999876
No 282
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.16 E-value=0.003 Score=48.98 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4589999999999999999998753
No 283
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.16 E-value=0.0031 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34689999999999999999998763
No 284
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.16 E-value=0.003 Score=47.62 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-.|.|+|..|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999987543
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.0052 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.++|++|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998765
No 286
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.15 E-value=0.0031 Score=47.33 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-.|+|+|..|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999987653
No 287
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.15 E-value=0.0025 Score=56.95 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|+||+|||||+..|+.-.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 489999999999999999998644
No 288
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.14 E-value=0.0031 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|+|.|+.|+|||||++.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999988764
No 289
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.13 E-value=0.0032 Score=48.12 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|..|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999764
No 290
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.13 E-value=0.0033 Score=49.29 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|.+|+|||||++.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
No 291
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.13 E-value=0.0037 Score=47.21 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|+|+|..|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 292
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.12 E-value=0.0033 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 293
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.10 E-value=0.0032 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|.|+.|+||||+++.+....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 294
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.09 E-value=0.0034 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|..|+|||||++.+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998653
No 295
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.09 E-value=0.02 Score=49.63 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=36.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
-.++.|+|++|+|||||+..+.... .... .=..++|++....++...+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3499999999999999999988753 1111 224688998888777665543
No 296
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.09 E-value=0.013 Score=50.04 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
++.+..-+..++ ++-|.|.+|+|||||+..+.... ...+ ..++|++.- .+...+..
T Consensus 58 LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~ 113 (315)
T 3bh0_A 58 LDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIK 113 (315)
T ss_dssp HHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHH
T ss_pred HHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHH
Confidence 444443344455 89999999999999999987655 2223 567777643 44444443
No 297
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.09 E-value=0.0069 Score=53.71 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=29.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS 227 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~ 227 (238)
.+++|+|+.|+|||||++.|.+........++++ .+-+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 3999999999999999999877541112344443 46676654
No 298
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.09 E-value=0.0072 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+.+|.++|++|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 299
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.08 E-value=0.0027 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 300
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.07 E-value=0.0032 Score=55.81 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+|+|+|++|+|||||.+.+.+.
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 48999999999999999999984
No 301
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.07 E-value=0.0034 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.-.|.|+|..|+|||||++.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999877654
No 302
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.06 E-value=0.0036 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|+|+|..|+|||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 303
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.06 E-value=0.0024 Score=60.33 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.0
Q ss_pred hcCCcceEEEEEecCCCchhHHH
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLL 201 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLa 201 (238)
+..++ +++|+|+||+|||||+
T Consensus 41 i~~Ge--~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGK--LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTS--EEEEECSTTSSHHHHH
T ss_pred ECCCC--EEEEECCCCCCHHHHh
Confidence 33456 9999999999999997
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.05 E-value=0.0039 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.-.|.|+|..|+|||||++.+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.0039 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|+.|+|||||++.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 306
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.04 E-value=0.0037 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997643
No 307
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.04 E-value=0.0037 Score=47.63 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35689999999999999999998754
No 308
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.03 E-value=0.0039 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999998754
No 309
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.02 E-value=0.02 Score=49.11 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=35.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCC----CCCEEEEEEeCCCCCHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPT----NFNYVIWVVMSKDSRLENIQ 233 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~----~Fd~~~wV~vs~~~~~~~i~ 233 (238)
.++.|+|++|+|||||+..+.... .... .=..++|++....++...+.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 499999999999999999988754 1110 12467899888777666554
No 310
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.02 E-value=0.004 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|+|..|+|||||++.+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 311
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.02 E-value=0.0019 Score=61.02 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.2
Q ss_pred EEEEEecCCCchhHHHHHHH
Q 046124 186 IVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~ 205 (238)
+++|+|+||+|||||++.+.
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 99999999999999998653
No 312
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.00 E-value=0.0055 Score=52.35 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCC---cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEGE---SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~~---~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+..+..++... ...-+-|+|+.|+|||+||+.+++..
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555565531 23578899999999999999999876
No 313
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.00 E-value=0.0032 Score=60.45 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+++|+|+||+|||||++.|.+-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 49999999999999999998764
No 314
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.99 E-value=0.004 Score=47.95 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34589999999999999999998753
No 315
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.99 E-value=0.004 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4589999999999999999998653
No 316
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.98 E-value=0.004 Score=48.12 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.8
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.....|.|+|..|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 317
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.97 E-value=0.0039 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.++.|.|++|+|||||+..+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 39999999999999998776554
No 318
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.97 E-value=0.0032 Score=49.40 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.9
Q ss_pred cCCcceEEEEEecCCCchhHHHHHHHh
Q 046124 180 EGESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 180 ~~~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.......|.|+|..|+|||||++.+.+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 344556899999999999999999975
No 319
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.96 E-value=0.0041 Score=48.47 Aligned_cols=26 Identities=42% Similarity=0.428 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 320
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.96 E-value=0.0042 Score=47.94 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998743
No 321
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.95 E-value=0.0035 Score=60.56 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+++|+|+||+|||||+|.|.+-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 459999999999999999998764
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.94 E-value=0.0042 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-.|+|+|..|+|||||++.+.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34579999999999999999998763
No 323
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.0044 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998753
No 324
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.92 E-value=0.0046 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
...|+|+|..|+|||||++.+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999999884
No 325
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.92 E-value=0.0044 Score=48.71 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35689999999999999999998754
No 326
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0046 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 327
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0048 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-.|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.88 E-value=0.0044 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|.|+|..|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999988775
No 329
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.88 E-value=0.0039 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|.|+|..|+|||||++.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998865
No 330
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.88 E-value=0.0047 Score=48.42 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34589999999999999999997653
No 331
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.88 E-value=0.0045 Score=53.20 Aligned_cols=27 Identities=30% Similarity=0.706 Sum_probs=22.2
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..+||+|.|-||+||||.+-.+.--+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 356799999999999999988776544
No 332
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.0048 Score=47.18 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34589999999999999999998754
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.87 E-value=0.0043 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+++|++|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999998765
No 334
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.87 E-value=0.0048 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.-.|.|+|..|+|||||++.+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4589999999999999998887643
No 335
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.86 E-value=0.0049 Score=47.93 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35689999999999999999998754
No 336
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.85 E-value=0.0049 Score=48.42 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
...|+|+|.+|+|||||++.+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999874
No 337
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.85 E-value=0.005 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987653
No 338
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.84 E-value=0.0052 Score=48.38 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45689999999999999999998754
No 339
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.84 E-value=0.0063 Score=49.96 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...++.+.|.+|+|||||+..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999998665
No 340
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.84 E-value=0.0032 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
....|+|+|.+|+|||||++.+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999853
No 341
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.82 E-value=0.0074 Score=52.58 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.9
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL 229 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~ 229 (238)
.++.|+|++|+|||||+..+....... + ..++|++....++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-g--~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-G--GIAAFIDAEHALDP 103 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-C--CeEEEEECCCCcCH
Confidence 499999999999999999987654221 1 24678877665554
No 342
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0051 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.6
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.....|.|+|..|+|||||++.+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345689999999999999999998753
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.81 E-value=0.0052 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.4
Q ss_pred CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+|.|+|+.|+||||+++.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998754
No 344
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.81 E-value=0.0041 Score=63.10 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=24.1
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ +++|+|++|+|||||++.+.+-.
T Consensus 1056 i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQ--TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSS--EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhcCc
Confidence 33456 99999999999999999999855
No 345
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.024 Score=48.31 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=41.1
Q ss_pred ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccC-CCCCCEEEEEEeCC-CCCHH
Q 046124 167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLES-PTNFNYVIWVVMSK-DSRLE 230 (238)
Q Consensus 167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v-~~~Fd~~~wV~vs~-~~~~~ 230 (238)
|.++..+.+...+..+.....-++|+.|+||||+|+.+.+..... ..+.+. .++..+. ...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGID 65 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHH
Confidence 445667788888877767789999999999999999997642111 123343 5555443 45443
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.80 E-value=0.027 Score=48.00 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=35.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhc-c----------CCCCC--CEEEEEEeCCCCCHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFL-E----------SPTNF--NYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~-~----------v~~~F--d~~~wV~vs~~~~~~~i~~ 234 (238)
-.++-|+|++|+|||||+..+..... . ..+-. ..++|++....++...+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 34999999999999999998876420 0 01111 4678998888777765553
No 347
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.79 E-value=0.01 Score=48.80 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
...|.|.|+.|+||||+++.+.... .. ..+.......-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~~-~~~~~~~~~re 64 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-QQ-NGIDHITRTRE 64 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-HH-TTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCeeeeecC
Confidence 3589999999999999999999877 32 34553444433
No 348
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.79 E-value=0.0055 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998753
No 349
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0056 Score=47.67 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34589999999999999999998743
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.79 E-value=0.0054 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999998754
No 351
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0056 Score=48.60 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34589999999999999999987643
No 352
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.77 E-value=0.0053 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998754
No 353
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.77 E-value=0.0055 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988653
No 354
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.76 E-value=0.0061 Score=49.12 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999998753
No 355
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.76 E-value=0.0056 Score=47.75 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-.|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 356
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.76 E-value=0.0057 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999998654
No 357
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0057 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999998753
No 358
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.74 E-value=0.0047 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988754
No 359
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.74 E-value=0.0049 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998754
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.73 E-value=0.01 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|.+|+|||||+..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998544
No 361
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.72 E-value=0.0059 Score=47.58 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998753
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.72 E-value=0.0056 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|+|++|+|||||++.+++..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999876
No 363
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.72 E-value=0.0057 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987643
No 364
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.69 E-value=0.0061 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|.|+|..|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999864
No 365
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.69 E-value=0.0064 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 366
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.68 E-value=0.0063 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999998643
No 367
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.67 E-value=0.0062 Score=47.82 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45689999999999999999998653
No 368
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0067 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|..|+|||||++.+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998753
No 369
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.62 E-value=0.0064 Score=47.64 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|..|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999998764
No 370
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.61 E-value=0.0065 Score=48.46 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|..|+|||||++.+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3458999999999999999999864
No 371
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.61 E-value=0.0083 Score=57.43 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=36.3
Q ss_pred CcceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+... ....+-++|+.|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789998888887766521 12369999999999999999999875
No 372
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.61 E-value=0.0053 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998754
No 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.60 E-value=0.0067 Score=51.73 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|.+|+|||||++.+.+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 374
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.60 E-value=0.0072 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|.|+||.|+|||||+..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998765
No 375
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.59 E-value=0.0046 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+-.-.|+|+|.+|+|||||++.+++.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 343456899999999999999998864
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.59 E-value=0.012 Score=47.65 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCC-cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 171 QLEHVWRCLEGE-SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 171 ~~~~l~~~L~~~-~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-...+..++.+- ...-+-|+||+|+||||+|..+.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555555431 22369999999999999999888765
No 377
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0071 Score=47.71 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999998653
No 378
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.59 E-value=0.0057 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4479999999999999999998653
No 379
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.58 E-value=0.007 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|.+|+|||||++.+.+..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998764
No 380
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0077 Score=46.89 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998753
No 381
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.56 E-value=0.0049 Score=62.50 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ +++|+|++|+|||||++.+.+..
T Consensus 415 ~G~--~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQ--TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 455 99999999999999999998865
No 382
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.55 E-value=0.015 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.++|.+|+||||++-.+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988665
No 383
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.53 E-value=0.0022 Score=50.64 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=23.4
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+.....-.|+|+|..|+|||||++.+.+.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 34455668999999999999999887653
No 384
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.54 E-value=0.0079 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|..|+|||||++.+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4589999999999999999998753
No 385
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.54 E-value=0.015 Score=48.67 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998764
No 386
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.54 E-value=0.0037 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..|+|+|++|+|||||++.+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 47999999999999999999876
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.53 E-value=0.0074 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.184 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998653
No 388
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.53 E-value=0.0076 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+|.|+||.|+|||||+..+....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999998765
No 389
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.52 E-value=0.0077 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|++|+||||++..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 390
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.52 E-value=0.0047 Score=49.26 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 391
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.50 E-value=0.0082 Score=47.36 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 45689999999999999999997643
No 392
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.50 E-value=0.02 Score=51.41 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=32.2
Q ss_pred ecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 167 GLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 167 G~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+....+..+...+..++ ..+.|.|++|+||||++..+....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34556666666766654 389999999999999999998876
No 393
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.0049 Score=57.53 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=34.6
Q ss_pred CcceecHHHHHHHHHHhcCCcce-----------EEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEGESVG-----------IVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~~~~~-----------vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++|.+.....+...|..+... -|-++|++|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45688887777666555554211 48899999999999999998765
No 394
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.46 E-value=0.0085 Score=49.22 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++||.|+.|+||||+++.|....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997754
No 395
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.46 E-value=0.0085 Score=50.71 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=23.0
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....++|+|+|-||+||||++-.+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 3466799999999999999999887665
No 396
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0077 Score=48.48 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
....|.|+|.+|+|||||++.+.+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.45 E-value=0.0088 Score=58.09 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=35.3
Q ss_pred cceecHHHHHHHHHHhcCC---------cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCLEGE---------SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L~~~---------~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++|.+..+..+...+... ....+-|+|+.|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588888888877666421 12578999999999999999998865
No 398
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.44 E-value=0.0052 Score=60.15 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~ 205 (238)
..+++|+||||+|||||++.|.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHH
Confidence 4599999999999999999875
No 399
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.44 E-value=0.0048 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=11.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEEECCCCC-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34589999999999999999987653
No 400
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.43 E-value=0.015 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999998754
No 401
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.41 E-value=0.0075 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|.+|+|||||++.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 34579999999999999999998754
No 402
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.41 E-value=0.0092 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999988653
No 403
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.41 E-value=0.008 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998643
No 404
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.40 E-value=0.01 Score=57.17 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=32.9
Q ss_pred cceecHHHHHHHHHHh----cC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 164 TVVGLQLQLEHVWRCL----EG---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 164 ~~vG~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
++.|.+..++.|.+.+ .. ..++=|-++|++|+||||||+.|.++.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567776666665443 22 134578999999999999999999866
No 405
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.40 E-value=0.0083 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|+|+|..|+|||||++.+.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.40 E-value=0.0042 Score=60.03 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=35.7
Q ss_pred CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+++|.+...+.+...+.. .....+.++|++|+||||||+.|.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3567888888887776542 123468899999999999999999876
No 407
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.40 E-value=0.0056 Score=50.74 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999998765
No 408
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.38 E-value=0.0095 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred CcceEEEEEecCCCchhHHHHHHHh
Q 046124 182 ESVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 182 ~~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
.....|.|+|..|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999864
No 409
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.36 E-value=0.0093 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|+|..|+|||||++.+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987653
No 410
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.36 E-value=0.0073 Score=59.23 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchhHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHI 204 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i 204 (238)
..+++|+|+||+|||||++.|
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 459999999999999999998
No 411
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.32 E-value=0.0079 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.-.|+|+|..|+|||||++.+++.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 412
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.0083 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|+|.+|+|||||++.+.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 413
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.24 E-value=0.019 Score=47.73 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.++|..|+|||||.+.+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.21 E-value=0.021 Score=54.50 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=36.0
Q ss_pred CcceecHHHHHHHHHHhcC---------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG---------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~---------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578988888877766542 122478999999999999999999866
No 415
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.19 E-value=0.042 Score=49.76 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=40.5
Q ss_pred HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH-HHHHHHH
Q 046124 175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL-ENIQETI 236 (238)
Q Consensus 175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~-~~i~~~I 236 (238)
+++.|.. ..-.+++|+|..|+|||||+..+.+.. .+.+-+.++++-+.+.... .++.+++
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~ 204 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEM 204 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHh
Confidence 3455543 222399999999999999999987754 1234467788888877643 4555443
No 416
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.14 E-value=0.0076 Score=61.29 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.9
Q ss_pred hcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 179 LEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 179 L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+..++ .|||||+.|+|||||++++.+-.
T Consensus 1102 I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQ--TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTC--EEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCC--EEEEECCCCChHHHHHHHHhcCc
Confidence 33456 99999999999999999998755
No 417
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.14 E-value=0.024 Score=47.74 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+++|.+|+|||||.+.+.+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 44579999999999999999998754
No 418
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.11 E-value=0.013 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+++-|+|++|+||||||..+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999999999864
No 419
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.11 E-value=0.02 Score=51.11 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=35.0
Q ss_pred eecHHHHHHHHHHhcC-------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEG-------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~-------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.++.++.+...+.+ +....|+|+|..|+|||||++.+.+..
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 5777888888877752 245789999999999999999998754
No 420
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.08 E-value=0.0099 Score=58.89 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+++|+|+||+|||||++.| +-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 369999999999999999998 53
No 421
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.012 Score=47.05 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998753
No 422
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.07 E-value=0.028 Score=57.22 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++ .++|||+.|+|||||++++.+..
T Consensus 443 ~G~--~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQ--TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTC--EEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCc--EEEEEecCCCcHHHHHHHhcccc
Confidence 345 99999999999999999999866
No 423
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.04 E-value=0.015 Score=52.24 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 171 QLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 171 ~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
.++.+..-+..++ ++.|.|.+|+|||||+..+........+ ..++|++.
T Consensus 192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEES
T ss_pred HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 3455544444556 9999999999999999998876521111 24666654
No 424
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.04 E-value=0.015 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|.|+.|+||||+++.+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999987643
No 425
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.01 E-value=0.02 Score=50.07 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=31.0
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL 229 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~ 229 (238)
.++-|.|++|+||||||..+...... .+ ..++|++....++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~-~g--~~vlyid~E~s~~~ 105 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR-EG--KTCAFIDAEHALDP 105 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEeCCCCccH
Confidence 48999999999999999988765421 12 25788877665553
No 426
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.97 E-value=0.024 Score=47.21 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.+.|...+...- ..++++|.+|+|||||++.+.+..
T Consensus 88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence 344555554331 479999999999999999998754
No 427
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.97 E-value=0.0057 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=5.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
...|.|+|..|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988775
No 428
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.94 E-value=0.015 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 046124 184 VGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~ 205 (238)
.++..|+|+||.|||||+..|+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999987
No 429
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.91 E-value=0.012 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|.|+.|+||||+++.+....
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999877
No 430
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.90 E-value=0.015 Score=49.05 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|+|+|..|+|||||++.+.+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998754
No 431
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.90 E-value=0.032 Score=49.46 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124 174 HVWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS 227 (238)
Q Consensus 174 ~l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~ 227 (238)
.+++.+.. +.-.+++|+|..|+|||||+..|.+........+.| +.+-+.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence 45566654 233499999999999999999988754111233444 456666543
No 432
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.90 E-value=0.017 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+|+|.|+.|+||||+++.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 48999999999999999988653
No 433
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.86 E-value=0.02 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
-.|.|+|.+|+|||+|+..+.+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 37999999999999999987654
No 434
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.83 E-value=0.012 Score=46.97 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchhHHHHH-HHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTH-INNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~-i~~~ 207 (238)
...|.|+|..|+|||||++. +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45899999999999999998 5444
No 435
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.80 E-value=0.0061 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|..|+|||||++.+.+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998854
No 436
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.77 E-value=0.014 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..|+|+|.+|+|||||.+.+.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999876
No 437
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.71 E-value=0.029 Score=50.75 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=29.6
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS 227 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~ 227 (238)
+++|+|+.|+|||||++.+.+.. .. ..-+.++++-+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCc
Confidence 79999999999999999988764 11 122455667776665
No 438
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.67 E-value=0.021 Score=46.58 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.4
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|.|+.|+||||+++.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 439
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.65 E-value=0.026 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHH
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~ 205 (238)
-.+++..+..++ .+.|+|+.|+||||++..+.
T Consensus 66 q~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQNS--VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHH
Confidence 444555555565 89999999999999777654
No 440
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.62 E-value=0.019 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.+..|+|+|..|+|||||++.+.+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3558999999999999999999985
No 441
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.61 E-value=0.033 Score=47.86 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCcc-eEEEEEecCCCchhHHHHHHHhhh
Q 046124 169 QLQLEHVWRCLEGESV-GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~-~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+...+.+...+..+.. ..+-++|+.|+||||+|+.+....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4566777777777653 468999999999999999988765
No 442
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.60 E-value=0.02 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.++|+.|+||||+++.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997654
No 443
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.56 E-value=0.03 Score=51.22 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHhc--CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 168 LQLQLEHVWRCLE--GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 168 ~~~~~~~l~~~L~--~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+..+.+..... .....+|.+.|+.|+||||+++.+....
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3344444444441 2344689999999999999999999987
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.56 E-value=0.022 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..|.|.|+.|+||||||..+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 479999999999999999997643
No 445
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.53 E-value=0.02 Score=51.70 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.8
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.++|+.|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998765
No 446
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.50 E-value=0.076 Score=48.30 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=41.0
Q ss_pred HHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 046124 176 WRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSR-LENIQETI 236 (238)
Q Consensus 176 ~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~-~~~i~~~I 236 (238)
++.|.. ..-.+++|+|..|+|||||+..+.+.. .+.+-+.++++-+.+... +.++.+++
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~ 216 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEM 216 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHH
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhh
Confidence 444443 223389999999999999999888754 123457888888888774 34555544
No 447
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.31 E-value=0.051 Score=47.10 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
++.+..-+..++ ++.|.|.+|+|||||+..+.... ...+ ..++|++ -+.+...+...+
T Consensus 36 LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~-a~~g--~~Vl~fS--lEms~~ql~~Rl 93 (338)
T 4a1f_A 36 LDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSA-LNDD--RGVAVFS--LEMSAEQLALRA 93 (338)
T ss_dssp HHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHH-HHTT--CEEEEEE--SSSCHHHHHHHH
T ss_pred HHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEe--CCCCHHHHHHHH
Confidence 444444444556 89999999999999999988765 2211 2455554 455566555544
No 448
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.29 E-value=0.0091 Score=57.89 Aligned_cols=21 Identities=29% Similarity=0.669 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhHHHHH-HHh
Q 046124 186 IVGLYGMGGVGKTTLLTH-INN 206 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~-i~~ 206 (238)
+++|+|++|+|||||++. +++
T Consensus 525 iv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEEECCTTSSHHHHCCCCCHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHH
Confidence 999999999999999996 553
No 449
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.24 E-value=0.034 Score=48.71 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.-+.|+|+.|+|||||++.+....
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998765
No 450
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.17 E-value=0.12 Score=44.62 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=31.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLE 230 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~ 230 (238)
.++-|.|+.|+|||||+-.+...... .+.=..++||+....++..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH
Confidence 37899999999999998877655421 1111367888877766654
No 451
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.14 E-value=0.043 Score=48.06 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=30.9
Q ss_pred eEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL 229 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~ 229 (238)
.++-|.|++|+|||||+..+...... .+ ..++|++....++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~-~g--~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK-AG--GTCAFIDAEHALDP 116 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH-CC--CeEEEEECCCChhH
Confidence 48999999999999999888765411 12 25788887766554
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.07 E-value=0.022 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|.+|+|||||.+.+.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998753
No 453
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.07 E-value=0.015 Score=57.09 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEEEecCCCchhHHHHHH
Q 046124 186 IVGLYGMGGVGKTTLLTHI 204 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i 204 (238)
+++|+|++|+|||||++.+
T Consensus 670 ivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 670 LTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 9999999999999999985
No 454
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.01 E-value=0.0069 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|..|+|||||++.+.+.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988754
No 455
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.00 E-value=0.07 Score=44.69 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=27.4
Q ss_pred HHHHHHHhcCC--cceEEEEEecCCCchhHHHHHHHhh
Q 046124 172 LEHVWRCLEGE--SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 172 ~~~l~~~L~~~--~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..-+..+|... ...-|-++||+|+|||+||+.|.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34456666543 2346999999999999999999874
No 456
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.98 E-value=0.032 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred cceEEEEEecCCCchhHHHHHH
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHI 204 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i 204 (238)
....|-|+|.||+||||++|.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4568999999999999999985
No 457
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.97 E-value=0.032 Score=52.76 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+|+|.+|+|||||++.+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCChHHHHHHHHHHh
Confidence 4568999999999999999999843
No 458
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.82 E-value=0.042 Score=44.71 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|-|+.|+||||+++.+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999887653
No 459
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.78 E-value=0.043 Score=47.53 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcC------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 170 LQLEHVWRCLEG------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 170 ~~~~~l~~~L~~------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.++++.+.|.. .+...|+|+|..|+|||||++.+.+..
T Consensus 11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 455566655542 246789999999999999999998754
No 460
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.76 E-value=0.064 Score=46.89 Aligned_cols=39 Identities=33% Similarity=0.516 Sum_probs=30.7
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.|.+..++.+..++.. ..|+++|..|+|||||.+.+.+.
T Consensus 147 ~gi~~L~~~I~~~~~~---~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYREG---GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHHTT---SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc---CcEEEEcCCCCchHHHHHHHHhh
Confidence 5666666666655433 36999999999999999999986
No 461
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.73 E-value=0.04 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=17.9
Q ss_pred eEEEEEecCCCchhHHHHHHHh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~ 206 (238)
-.|-+.|+||+||||++-.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4688899999999999766543
No 462
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.73 E-value=0.042 Score=44.14 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|+|.|+.|+||+|.|+.+-+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 34599999999999999999987644
No 463
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.71 E-value=0.053 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.|.|+.|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 464
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.69 E-value=0.026 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|.|+|..|+|||||++.+.+.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSS
T ss_pred CcceEEEECCCCccHHHHHHHHhCC
Confidence 3458999999999999999998764
No 465
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.68 E-value=0.039 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.|.|+.|+||||+++.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 466
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.65 E-value=0.081 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.338 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..-.|+++|.+|+|||||++.+.+..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 467
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=93.61 E-value=0.054 Score=48.73 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
+..+.+|+|+|+..+|||||++.+.+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 457899999999999999999999874
No 468
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.60 E-value=0.018 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+.+|+|.||+|||||+..|+--
T Consensus 60 ~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 60 GGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 359999999999999999999643
No 469
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.57 E-value=0.016 Score=56.88 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=18.1
Q ss_pred EEEEEecCCCchhHHHHHH
Q 046124 186 IVGLYGMGGVGKTTLLTHI 204 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i 204 (238)
+++|+|++|+|||||++.+
T Consensus 652 iv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 652 FVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp EEECCBCTTSSHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 9999999999999999985
No 470
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.50 E-value=0.074 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...+|.+.|+.|+||||+++.+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 471
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.48 E-value=0.063 Score=50.03 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+....+|+|+|+.|+|||||++.+.+..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4567899999999999999999998864
No 472
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.47 E-value=0.068 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.3
Q ss_pred HHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 174 HVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 174 ~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+..+.... ++.|.|++|+||||++..+....
T Consensus 196 ~Av~~~~~~~--~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 196 SVLDQLAGHR--LVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHTTCS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence 3344444444 88999999999999999998765
No 473
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.42 E-value=0.083 Score=46.18 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=30.9
Q ss_pred eecHHHHHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 166 VGLQLQLEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.|.+..++.+..++.. ..|+++|..|+|||||.+.+.+..
T Consensus 145 ~gi~~L~~~l~~~~~~---~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 145 QGIAELADAIEYYRGG---KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTHHHHHHHHHHHHTT---SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cCHHHHHhhhhhhccc---ceEEEecCCCCChhHHHHHHHhhh
Confidence 4666666666555432 379999999999999999999863
No 474
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.37 E-value=0.051 Score=48.60 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHH
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQE 234 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~ 234 (238)
++.++.-+..++ ++.|.|.+|+|||||+..+........+ ..++|++. +.+...+..
T Consensus 190 LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl--E~~~~~l~~ 246 (444)
T 2q6t_A 190 LDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL--EMPAAQLTL 246 (444)
T ss_dssp HHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES--SSCHHHHHH
T ss_pred hhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC--CCCHHHHHH
Confidence 344443333445 8999999999999999998876521111 24666654 333444433
No 475
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.37 E-value=0.045 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred ceEEEEEecC---------CCchhHHHHHHHh
Q 046124 184 VGIVGLYGMG---------GVGKTTLLTHINN 206 (238)
Q Consensus 184 ~~vI~IvG~g---------GvGKTTLak~i~~ 206 (238)
.-.|+|+|.. |+|||||++.+.+
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3589999999 9999999999987
No 476
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=93.35 E-value=0.048 Score=45.97 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....|.|+|..|+|||||++.+.+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC
Confidence 44689999999999999999887643
No 477
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.28 E-value=0.11 Score=47.98 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC-CHHHHHHH
Q 046124 175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS-RLENIQET 235 (238)
Q Consensus 175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~-~~~~i~~~ 235 (238)
+++.|.. ..-.+++|.|..|+|||+|+..|.+.. +-+.++++-+.+.. .+.++.++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 3455543 223399999999999999999998854 23577888777663 34455444
No 478
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.22 E-value=0.045 Score=44.19 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~ 206 (238)
...-||+.|.-|+||||+++.+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998754
No 479
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.15 E-value=0.14 Score=47.30 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=39.5
Q ss_pred HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCH-HHHHHH
Q 046124 175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRL-ENIQET 235 (238)
Q Consensus 175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~-~~i~~~ 235 (238)
+++.|.. ..-.+++|+|..|+|||||+..|.+.. +-+.++++-+.+..+. .++.++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 4455543 223399999999999999999998753 2357888888877654 355444
No 480
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.96 E-value=0.059 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
..+|+|+|..|+|||||++.+.+..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998864
No 481
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.91 E-value=0.065 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
...|.|-|+-|+||||+++.+....
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L 31 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAA 31 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 482
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.86 E-value=0.061 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
-.|+|+|..|+|||||++.+.+..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998764
No 483
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.63 E-value=0.076 Score=46.33 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.3
Q ss_pred cceEEEEEe-cCCCchhHHHHHHHhhh
Q 046124 183 SVGIVGLYG-MGGVGKTTLLTHINNKF 208 (238)
Q Consensus 183 ~~~vI~IvG-~gGvGKTTLak~i~~~~ 208 (238)
..++|+|+| .||+||||++-.+....
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHH
Confidence 578999996 89999999998887654
No 484
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=92.62 E-value=0.073 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
..+.|+|+|..|+|||||+..+...
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4578999999999999999999763
No 485
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.61 E-value=0.15 Score=47.60 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=33.5
Q ss_pred EEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 186 IVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
...|.|++|+||||++..+...... .-...+.++..-+..+..+...+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l 244 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKI 244 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT---SSSCCEEEEESSHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCcHHHHHHHHHHH
Confidence 6789999999999988777655411 12346777777666666666554
No 486
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.59 E-value=0.071 Score=42.92 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=18.5
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 046124 185 GIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~ 205 (238)
.++-|.|.+|+|||||+-.+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 489999999999999998754
No 487
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=92.59 E-value=0.072 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCchhHHHHHHH
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHIN 205 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~ 205 (238)
..+.|+|+|..|+|||||+..+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999999985
No 488
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.55 E-value=0.064 Score=51.75 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=34.5
Q ss_pred CcceecHHHHHHHHHHhcC-------------CcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 163 PTVVGLQLQLEHVWRCLEG-------------ESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 163 ~~~vG~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
.++.|.++.++.|.+.+.- ...+-|-++||+|+|||+||+.|.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 3556788877777665431 123457899999999999999999865
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.50 E-value=0.081 Score=41.56 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHHHHh
Q 046124 186 IVGLYGMGGVGKTTLLTHINN 206 (238)
Q Consensus 186 vI~IvG~gGvGKTTLak~i~~ 206 (238)
-|.|.|+.|+||||||-.+..
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999998876
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.48 E-value=0.14 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchhHHHHHHHhhh
Q 046124 185 GIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
+.+.|.|++|+||||++..+....
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999998876654
No 491
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.38 E-value=0.097 Score=46.95 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEe
Q 046124 172 LEHVWRCLEGESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVM 223 (238)
Q Consensus 172 ~~~l~~~L~~~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~v 223 (238)
++.++.-+..++ .+-|.|.+|+|||||+-.+.... ...+ ..++|++.
T Consensus 187 LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~-a~~g--~~vl~fSl 233 (444)
T 3bgw_A 187 LDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSL 233 (444)
T ss_dssp HHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHH-HHTT--CEEEEECS
T ss_pred HHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHH-HHcC--CEEEEEEC
Confidence 444443344455 89999999999999999887765 2222 24666643
No 492
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.37 E-value=0.084 Score=45.85 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCcceEEEEEecCCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~gGvGKTTLak~i~~~~ 208 (238)
....+++.+.|.||+||||++-.+.-..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4455688888999999999999887655
No 493
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.30 E-value=0.13 Score=44.55 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=24.1
Q ss_pred HHHHHHhcCCcceEEEEE-ecCCCchhHHHHHHHhhh
Q 046124 173 EHVWRCLEGESVGIVGLY-GMGGVGKTTLLTHINNKF 208 (238)
Q Consensus 173 ~~l~~~L~~~~~~vI~Iv-G~gGvGKTTLak~i~~~~ 208 (238)
..+...+.+...++|.|+ |.||+||||++-.+.-..
T Consensus 14 t~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 14 GITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp HHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred hhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 334444444444566655 789999999998886654
No 494
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.23 E-value=0.17 Score=47.37 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCcceEEEEEecCCCchhH-HHHHHHhhhccCCCCCCEEEEEEeCCCCCHHHHHHHH
Q 046124 169 QLQLEHVWRCLEGESVGIVGLYGMGGVGKTT-LLTHINNKFLESPTNFNYVIWVVMSKDSRLENIQETI 236 (238)
Q Consensus 169 ~~~~~~l~~~L~~~~~~vI~IvG~gGvGKTT-Lak~i~~~~~~v~~~Fd~~~wV~vs~~~~~~~i~~~I 236 (238)
+...+.+...|...+ +.-|.||+|+|||| ++..|+.-. .. ...+.|+..-+..+.++...+
T Consensus 192 ~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~-~~----~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV-KQ----GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH-HT----TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH-hC----CCeEEEEcCchHHHHHHHHHH
Confidence 344555555565555 66789999999996 455555443 21 236778777766677766654
No 495
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.15 E-value=0.18 Score=42.61 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.3
Q ss_pred CCcceEEEEEec-CCCchhHHHHHHHhhh
Q 046124 181 GESVGIVGLYGM-GGVGKTTLLTHINNKF 208 (238)
Q Consensus 181 ~~~~~vI~IvG~-gGvGKTTLak~i~~~~ 208 (238)
+...++|+|.|. +|+||||++-.+....
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 456679999996 8999999999887665
No 496
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.12 E-value=0.17 Score=46.67 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHhcC-CcceEEEEEecCCCchhHHHHHHHhhhccCCCCCCEEEEEEeCCCC
Q 046124 175 VWRCLEG-ESVGIVGLYGMGGVGKTTLLTHINNKFLESPTNFNYVIWVVMSKDS 227 (238)
Q Consensus 175 l~~~L~~-~~~~vI~IvG~gGvGKTTLak~i~~~~~~v~~~Fd~~~wV~vs~~~ 227 (238)
+++.|.. ..-.+++|.|..|+|||+|+..|.+.. +-+.++++-+.+..
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERG 259 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECH
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccH
Confidence 3455543 222399999999999999999998754 23567777777663
No 497
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.11 E-value=0.061 Score=52.61 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.9
Q ss_pred eEEEEEecCCCchhHHH
Q 046124 185 GIVGLYGMGGVGKTTLL 201 (238)
Q Consensus 185 ~vI~IvG~gGvGKTTLa 201 (238)
.+++|+|++|+|||||+
T Consensus 611 eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 611 VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEEccCCCChhhhH
Confidence 38999999999999997
No 498
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=92.06 E-value=0.081 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCchhHHHHHHHhh
Q 046124 183 SVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 183 ~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
....|+++|..|+|||||++.+.+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 3458999999999999999999873
No 499
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.06 E-value=0.076 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.0
Q ss_pred ceEEEEEe---cCCCchhHHHHHHHhhh
Q 046124 184 VGIVGLYG---MGGVGKTTLLTHINNKF 208 (238)
Q Consensus 184 ~~vI~IvG---~gGvGKTTLak~i~~~~ 208 (238)
.++|+|++ .||+||||++-.+....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 45888887 89999999999887655
No 500
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.92 E-value=0.14 Score=45.88 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=32.5
Q ss_pred eecHHHHHHHHHHhcC-------CcceEEEEEecCCCchhHHHHHHHhh
Q 046124 166 VGLQLQLEHVWRCLEG-------ESVGIVGLYGMGGVGKTTLLTHINNK 207 (238)
Q Consensus 166 vG~~~~~~~l~~~L~~-------~~~~vI~IvG~gGvGKTTLak~i~~~ 207 (238)
.|.++.++.+...+.. +....|+++|.+|+|||||++.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 4666777777666531 24578999999999999999999864
Done!