Query 046125
Match_columns 565
No_of_seqs 157 out of 1223
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 1E-142 2E-147 1129.5 29.3 538 1-544 192-729 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 6E-138 1E-142 1145.8 41.3 535 1-544 144-679 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 3.1E-97 7E-102 834.0 36.9 501 1-539 115-624 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 3.3E-95 7E-100 819.4 40.1 508 1-541 135-654 (654)
5 TIGR00733 putative oligopeptid 100.0 3.9E-56 8.6E-61 490.2 32.2 453 1-538 103-589 (591)
6 COG1297 Predicted membrane pro 100.0 2.8E-42 6E-47 363.8 25.0 466 1-543 117-618 (624)
7 PF03169 OPT: OPT oligopeptide 82.2 36 0.00078 39.0 15.7 24 478-504 220-243 (624)
8 COG0628 yhhT Predicted permeas 73.4 38 0.00081 35.8 11.7 153 217-386 167-330 (355)
9 PRK12287 tqsA pheromone autoin 71.5 47 0.001 34.9 11.9 48 339-386 266-318 (344)
10 PF01594 UPF0118: Domain of un 63.7 1.5E+02 0.0033 30.4 13.7 53 335-387 260-317 (327)
11 TIGR00733 putative oligopeptid 59.0 3.2E+02 0.007 31.2 20.9 230 282-536 2-266 (591)
12 TIGR02872 spore_ytvI sporulati 57.8 1E+02 0.0022 31.8 11.2 40 347-386 286-329 (341)
13 PF03606 DcuC: C4-dicarboxylat 49.5 1.6E+02 0.0035 32.4 11.5 92 253-355 251-342 (465)
14 PF02673 BacA: Bacitracin resi 42.7 3.8E+02 0.0081 27.2 14.5 26 366-391 213-238 (259)
15 KOG2927 Membrane component of 39.4 22 0.00047 37.2 2.5 29 250-278 183-212 (372)
16 PF04018 DUF368: Domain of unk 30.9 5.8E+02 0.013 25.9 11.1 61 322-393 154-216 (257)
17 PF03839 Sec62: Translocation 29.9 68 0.0015 31.8 4.1 54 250-303 104-160 (224)
18 PF09512 ThiW: Thiamine-precur 27.9 2.7E+02 0.0059 25.8 7.3 27 365-391 90-117 (150)
19 PRK10983 putative inner membra 27.3 7.8E+02 0.017 26.2 14.9 44 343-386 287-334 (368)
20 PF04995 CcmD: Heme exporter p 22.4 1.6E+02 0.0035 21.3 3.9 28 205-233 10-37 (46)
21 PF07907 YibE_F: YibE/F-like p 21.4 5.5E+02 0.012 25.8 8.9 94 361-474 121-214 (244)
22 PF13829 DUF4191: Domain of un 20.4 1.8E+02 0.004 28.8 5.0 44 250-298 24-67 (224)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-142 Score=1129.46 Aligned_cols=538 Identities=61% Similarity=1.196 Sum_probs=528.6
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|||+||++||++|+|++|.||++|++++|+|+||++|+.+. .+++|+|||+++|+++|+|+|+|+|+||.|++++|
T Consensus 192 ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~--g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~sw 269 (761)
T KOG2262|consen 192 LLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSK--GNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSW 269 (761)
T ss_pred HhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcc--cCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhhe
Confidence 5899999999999999999999999999999999999987543 36999999999999999999999999999999999
Q ss_pred eeeeccCccceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGALTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFPI 160 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p~ 160 (565)
.||+.|+|.+++|+|||..|||+.|+||||++|++|+|||+.+|+++.+|.++|.++..+|+.|++|+ +|.|+++++|+
T Consensus 270 vcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~~a~~fPI 348 (761)
T KOG2262|consen 270 VCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTYDAKYFPI 348 (761)
T ss_pred eeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccceecceece
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CCcccccCCCCceeceeeccCCCccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCC
Q 046125 161 FSSHLYTAQGPEYNITLIVNDKFELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRASSEGKQ 240 (565)
Q Consensus 161 ~s~~~~~~~g~~y~~s~il~~~~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~~ 240 (565)
.|+++||++|++||+++|+|+|.++|.+|||+|||.|+++.|+++||.+|++++++++|.+|+++||||+..|++.++++
T Consensus 349 ~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~k~~ 428 (761)
T KOG2262|consen 349 FSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFNKKM 428 (761)
T ss_pred ecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccchhcccccCCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHHhhhhheeeccCCCcchhHHHHH
Q 046125 241 DVHTRLMKNYKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFTLPVSIITATTNQTPGLNIITEY 320 (565)
Q Consensus 241 D~h~~~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~~p~l~~~sql 320 (565)
|+|+|+|++|||||+|||.++++++++++++.|+.++++.|+|||++++|+++++++.+|.|+++|+||++||+|+++|+
T Consensus 429 DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~ 508 (761)
T KOG2262|consen 429 DIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEY 508 (761)
T ss_pred CHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hhHhccCCchhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 046125 321 IMGVILPGEPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLLNSVEHICQPG 400 (565)
Q Consensus 321 i~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l~~~~~~~~~~ 400 (565)
|.||++||+|+|||.||.||+.+..||..++||+|+|||||+|||.||.+|++||+++++|+.+|..|++.+++++|+++
T Consensus 509 i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~ 588 (761)
T KOG2262|consen 509 IIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD 588 (761)
T ss_pred HHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCccchHHHHHHh
Q 046125 401 LLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFFLGGLLGPCAVWLLHKKFPNQSWIPLINLPVLLGAT 480 (565)
Q Consensus 401 ~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~~iGa~~~i~~~ll~r~~p~~~~~~~~~~pv~~~g~ 480 (565)
|++.||||..++++++||+||++||+|+|+.++.|+.+.|+|++|++.|+++|+++|++|+++|.+++|.|++++|.
T Consensus 589 ---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~ 665 (761)
T KOG2262|consen 589 ---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGT 665 (761)
T ss_pred ---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEeccc
Confidence 88899999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccccCccchhhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhcCCC
Q 046125 481 AYMPPATALNYNAWILVGTIFNFFVFRYRKKWWQRYNYILSAALDAGTAFMTVLLYVSLGLEEH 544 (565)
Q Consensus 481 ~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~yvlaagLiaG~al~gvv~~~~~~~~~~ 544 (565)
+.+||++..++++++++|+++|+++|||+++||+||||++|||||||.++++++++||+++++.
T Consensus 666 ~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~ 729 (761)
T KOG2262|consen 666 ANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI 729 (761)
T ss_pred ccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=6.4e-138 Score=1145.79 Aligned_cols=535 Identities=37% Similarity=0.795 Sum_probs=520.5
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|||+||++||++|+|++|+||++|++++|+|+||+++++..++|++||+|+|+++|+++|+|+|+|+|+||+|+.|||
T Consensus 144 ~~G~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w 223 (681)
T TIGR00727 144 FIGFGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNW 223 (681)
T ss_pred HHHHHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 47999999999999999999999999999999999987654334699999999999999999999999999999999999
Q ss_pred eeeeccCccceeeeccccccccccc-ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGA-LTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFP 159 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~-~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p 159 (565)
+||++|+|++++++||+..|||++| +|||||+|+++.|+|+++|+++++|+++|.+++++++.|++|| +|.|+++|+|
T Consensus 224 ~cwi~P~n~~~~~i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lP 302 (681)
T TIGR00727 224 MTWIKPNNINLNQIFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLP 302 (681)
T ss_pred hhhccCcchhhhhhhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccC
Confidence 9999999999999999999999999 8999999998899999999999999999999999999999999 9999999999
Q ss_pred CCCcccccCCCCceeceeeccCCCccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCC
Q 046125 160 IFSSHLYTAQGPEYNITLIVNDKFELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRASSEGK 239 (565)
Q Consensus 160 ~~s~~~~~~~g~~y~~s~il~~~~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~ 239 (565)
++|+++||++|++||+++|+|+|+++|+||||||||+|++++++++||++||+++++++|++++|||+|++++|+ +++
T Consensus 303 i~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~--~~~ 380 (681)
T TIGR00727 303 ISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD--DDY 380 (681)
T ss_pred CccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 567
Q ss_pred CccchhcccccCCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHHhhhhheeeccCCCcchhHHHH
Q 046125 240 QDVHTRLMKNYKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFTLPVSIITATTNQTPGLNIITE 319 (565)
Q Consensus 240 ~D~h~~~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~~p~l~~~sq 319 (565)
+|+|.|+||+|||||+|||++++++++++++++++.+++ ++|||++++|+++++++.+|.|+++|+||+++++|+++|
T Consensus 381 ~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t--~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~e 458 (681)
T TIGR00727 381 PDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPT--ETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTE 458 (681)
T ss_pred CChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHH
Confidence 899999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HhhHhccCCchhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 046125 320 YIMGVILPGEPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLLNSVEHICQP 399 (565)
Q Consensus 320 li~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l~~~~~~~~~ 399 (565)
+|.|+++||||++||++|++++++.+||.+++||||+|||+|+|||+||.+|++|+++|++|+++|++|++++++|+|++
T Consensus 459 li~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~ 538 (681)
T TIGR00727 459 FIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTA 538 (681)
T ss_pred HHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCccchHHHHHH
Q 046125 400 GLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFFLGGLLGPCAVWLLHKKFPNQSWIPLINLPVLLGA 479 (565)
Q Consensus 400 ~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~~iGa~~~i~~~ll~r~~p~~~~~~~~~~pv~~~g 479 (565)
+ |+++||||..++++++|++||++||+|+|++|++|+.++|++++|+++|+++|+++|++||+ +.|++|.|+++.+
T Consensus 539 ~---~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~ 614 (681)
T TIGR00727 539 D---QNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVG 614 (681)
T ss_pred C---CCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhh
Confidence 8 88999999999999999999999999999999999999999999999999999999999987 5599999999999
Q ss_pred hccccCccchhhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhcCCC
Q 046125 480 TAYMPPATALNYNAWILVGTIFNFFVFRYRKKWWQRYNYILSAALDAGTAFMTVLLYVSLGLEEH 544 (565)
Q Consensus 480 ~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~yvlaagLiaG~al~gvv~~~~~~~~~~ 544 (565)
.++++|+++.++..+..+|+++|+|+||||++||+||||++|||||+|+++++++++|+++++++
T Consensus 615 ~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 615 TGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 99999998899999999999999999999999999999999999999999999999999999876
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.1e-97 Score=834.02 Aligned_cols=501 Identities=37% Similarity=0.741 Sum_probs=464.5
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|+++|+++||++|+|++|+||+++|+++++++||++++. +.+++|+|+|.++|.++++|+|+|+|++|+|+.++|
T Consensus 115 ~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 191 (624)
T PF03169_consen 115 LLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALHSGGGW---REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSW 191 (624)
T ss_pred HHHHhhheeccccEEecccccCcchhHHHHHHHHhccCccc---hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 58999999999999999999999999999999999998832 125899999999999999999999999999999999
Q ss_pred eeeeccCccceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGALTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFPI 160 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p~ 160 (565)
+||++|+|+..++++|+. .++||||++. +|+|+++|+++++|+++|.+++|+++.|++||++|.|+++++|+
T Consensus 192 ~~w~~~~~~~~~~~~~~~------~~~~dws~~~--~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~ 263 (624)
T PF03169_consen 192 PCWIAPNNPWLNNLFGGW------SFSFDWSPIL--IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPF 263 (624)
T ss_pred ceeeccccchHhhhcccc------eeeEeecHHh--cCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccc
Confidence 999999999999988864 3899999554 89999999999999999999999999999999349999999999
Q ss_pred CCcccccCCCCceeceeeccCCCccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-----
Q 046125 161 FSSHLYTAQGPEYNITLIVNDKFELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRAS----- 235 (565)
Q Consensus 161 ~s~~~~~~~g~~y~~s~il~~~~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~----- 235 (565)
+|+++||++|. +|+++|.++|+++++++.++.+.+.|+..++.++++++|.+++++|++++++++.
T Consensus 264 ~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 334 (624)
T PF03169_consen 264 NSNSLFDNNGS---------SDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQR 334 (624)
T ss_pred cchhhhhhcCc---------cccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 99999999887 6778999999999999999999999999999999999999999999999877643
Q ss_pred --cCCCCccchhcccccCCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHHhhhhheeeccCCCc-
Q 046125 236 --SEGKQDVHTRLMKNYKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFTLPVSIITATTNQTP- 312 (565)
Q Consensus 236 --~~~~~D~h~~~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~~p- 312 (565)
+++++|+|++.||+|+|+|+|||+.+++++++++++++..++.+.++|+|+.++++++++++++|.++++|+||+||
T Consensus 335 ~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~ 414 (624)
T PF03169_consen 335 SSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPV 414 (624)
T ss_pred ccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 34668999999999999999999999999999999999888844599999999999999999999999999999988
Q ss_pred -chhHHHHHhhHhccCCchhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046125 313 -GLNIITEYIMGVILPGEPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLLN 391 (565)
Q Consensus 313 -~l~~~sqli~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l~ 391 (565)
++++++|+++|+++||++++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|++++++|++++
T Consensus 415 ~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~-- 492 (624)
T PF03169_consen 415 SGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL-- 492 (624)
T ss_pred hhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred hcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcc
Q 046125 392 SVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFFLGGLLGPCAVWLLHKKFPNQSWIPLI 471 (565)
Q Consensus 392 ~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~~iGa~~~i~~~ll~r~~p~~~~~~~~ 471 (565)
++++.|.++ ++++++||.+++.++++++|++++|+| +.+|..++|++++|++++++.++++|++|+
T Consensus 493 ~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~------- 558 (624)
T PF03169_consen 493 NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPS------- 558 (624)
T ss_pred HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCCh-------
Confidence 789999876 556899999999999999999999877 789999999999999999999999888773
Q ss_pred chHHHHHHhccccCccchhhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 046125 472 NLPVLLGATAYMPPATALNYNAWILVGTIFNFFVFRYRKKWWQRYNYILSAALDAGTAFMTVLLYVSL 539 (565)
Q Consensus 472 ~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~yvlaagLiaG~al~gvv~~~~~ 539 (565)
++++.|...+++++.+++++++++|+++++++||||++||+||||++||||||||+++++++++++
T Consensus 559 --~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 559 --PLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred --hheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 345455555666677789999999999999999999999999999999999999999999999864
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=3.3e-95 Score=819.40 Aligned_cols=508 Identities=39% Similarity=0.761 Sum_probs=455.7
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|+++|+++||++|+|++|+||+++|+++++|+||++.+.++ +|+++| +. ..+ |.++|+.+..++|
T Consensus 135 ~lG~~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~-g~~~~r--~l-~~~---------~~~~f~~~~~~~~ 201 (654)
T TIGR00728 135 FLGFGFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTAN-GDTIAK--NL-LRV---------LLKYFSSSFLWSF 201 (654)
T ss_pred HhHHhhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccC-CCccch--hH-HHh---------HHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999987544332 344444 21 111 6677777778888
Q ss_pred eeeeccCccceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGALTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFPI 160 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p~ 160 (565)
+||+.|++..++ +|| |+|+++++|||+++++++|+|+++|+++++|+++|++++|+++.|++|| +|.|.++++|+
T Consensus 202 ~~~~~p~~~~~~-~fg---glg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~~~~p~ 276 (654)
T TIGR00728 202 VSWFFPGFTAFQ-TFG---GLGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPADADPI 276 (654)
T ss_pred HHHHhcCCcccc-ccc---cccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccCCC
Confidence 899988877664 444 7889999999999988899999999999999999999999999999999 89999999999
Q ss_pred CCcccccCCCCceec-eeeccCC-CccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCC
Q 046125 161 FSSHLYTAQGPEYNI-TLIVNDK-FELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRASSEG 238 (565)
Q Consensus 161 ~s~~~~~~~g~~y~~-s~il~~~-~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~~~~ 238 (565)
+|++.+|++|.+|+. +++++++ .++|+++|++||++|+++++ |+.+|+.++++++|..++|+|++++.+|+..++
T Consensus 277 ~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 353 (654)
T TIGR00728 277 DSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHYKL 353 (654)
T ss_pred cchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc
Confidence 999999999999999 8999887 68999999999999999999 899999999999999999999999998876666
Q ss_pred CCccchhccccc--------CCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHHhhhhheeeccCC
Q 046125 239 KQDVHTRLMKNY--------KDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFTLPVSIITATTNQ 310 (565)
Q Consensus 239 ~~D~h~~~~~~y--------~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~ 310 (565)
.+|.|++++|+| +|+|+|||+.+++++++++++++..++...++|+|+++++++++++|++|.++++|+||.
T Consensus 354 ~~~~~~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp 433 (654)
T TIGR00728 354 GRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNP 433 (654)
T ss_pred cCCCChHHHhhcccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecc
Confidence 666666555554 999999999999999999998888776333899999999999999999999999999966
Q ss_pred CcchhHHHHHhhHhccCCchhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046125 311 TPGLNIITEYIMGVILPGEPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLL 390 (565)
Q Consensus 311 ~p~l~~~sqli~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l 390 (565)
..++++++|+++|+++||++.+||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|++++++|++++.
T Consensus 434 ~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~ 513 (654)
T TIGR00728 434 VSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLY 513 (654)
T ss_pred cchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccCc
Q 046125 391 NSVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFFLGGLLGPCAVWLLHKKFPNQSWIPL 470 (565)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~~iGa~~~i~~~ll~r~~p~~~~~~~ 470 (565)
++.+ . ++++|+||++++++++|++||++||+ +|+.+++|+.+.|++++| +++++.++.||++|| +.++
T Consensus 514 ~~~~-~-------~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~ 581 (654)
T TIGR00728 514 HAIG-N-------QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKY 581 (654)
T ss_pred hccC-C-------CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhh
Confidence 6543 2 34579999999999999999999999 999999999999999999 899999999999987 4589
Q ss_pred cchHHHHHHhccccCccchhhhHHHHHHHHHHHHHHhcChhhh--hhhhhhhhhhhhhhhHHHHHHHHHHHhc
Q 046125 471 INLPVLLGATAYMPPATALNYNAWILVGTIFNFFVFRYRKKWW--QRYNYILSAALDAGTAFMTVLLYVSLGL 541 (565)
Q Consensus 471 ~~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~--~ky~yvlaagLiaG~al~gvv~~~~~~~ 541 (565)
+|+|+++++...+||..+.++.++.++|+++++++|||+++|| +||||++||||||||++++++++|++++
T Consensus 582 ~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 582 INPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred cCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 9999998877777878888888888899999999999988876 9999999999999999999999999874
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=3.9e-56 Score=490.18 Aligned_cols=453 Identities=16% Similarity=0.172 Sum_probs=326.9
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|..++.||||++|++++++|||++|+++++++.++ . + +++|.|.++.++..+++|+++++ + ..+
T Consensus 103 ~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g~~---g---~-~~~~~~~l~~g~~~s~~~~~~~~--~---~~~-- 168 (591)
T TIGR00733 103 SLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAGDK---A---R-NGTGAKPIAYGGILASIYAFLGS--L---RVW-- 168 (591)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcccc---c---c-chhhHHHHHHHHHHHHHHHHHHH--h---ccC--
Confidence 4788999999999999999999999999999997322 1 1 24689999999999999999843 1 111
Q ss_pred eeeeccCccceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGALTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFPI 160 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p~ 160 (565)
|.+..... ..|.+...+++||| ++++|.||++|+++.+++++|++++|+++.|++.. .+ |...+.+.
T Consensus 169 -----~~~~~~~~----~~g~~~~~~~~~~S--palvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~-~~-~~~~~~~~ 235 (591)
T TIGR00733 169 -----SGTLSAAK----LVGRRALYFGSDLS--LALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTA-KM-GSPGDLSA 235 (591)
T ss_pred -----CchHHHHH----hcCCcceEEEeccc--HHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCCccH
Confidence 21110000 01112234578999 88999999999999999999999999999999987 33 32100000
Q ss_pred CCcccccCCCCceeceeeccCCCccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCC--
Q 046125 161 FSSHLYTAQGPEYNITLIVNDKFELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRASSEG-- 238 (565)
Q Consensus 161 ~s~~~~~~~g~~y~~s~il~~~~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~~~~-- 238 (565)
.+ ... .+-.+.+||+ |++.+. ++. .+.+++..|++++++|+..++
T Consensus 236 ------------~~----------~~~-~vw~~~vR~i--------Gvg~m~-~~g-l~~l~~~~~~~~~~~~~~~~~~~ 282 (591)
T TIGR00733 236 ------------LD----------LAW-TIWSTKVRYI--------GVGAIV-VAA-LWTLLKLRGPIARGIKAGLEAAR 282 (591)
T ss_pred ------------HH----------HHH-HHHhcccchh--------hHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 000 1112346665 555333 333 444567888887777653221
Q ss_pred CCccchhcccccCCCCchHHHHHHHHHHHHHHhhhhhccccccCc--------h-HHHHHHHHHHHHHHhhhhheeec--
Q 046125 239 KQDVHTRLMKNYKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMP--------W-WGLIFASGLAFIFTLPVSIITAT-- 307 (565)
Q Consensus 239 ~~D~h~~~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp--------~-~~~~lai~la~i~~~~~g~~~g~-- 307 (565)
.++.+++..|+++|+|.|+...+.++.+ +. +....+ +.| + .+.+++++++|+++.++|++.|+
T Consensus 283 ~~~~~~~~~r~~~dip~~~v~~~~~~~~-~~-~~~~~~----~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iG 356 (591)
T TIGR00733 283 RRQAGEAVLRTEEDLPINIVLTLVALFV-IP-LADFLL----YAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVG 356 (591)
T ss_pred ccccccccccccccccHHHHHHHHHHHH-HH-HHHHhc----CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 1111123467889999996544333222 11 111122 333 3 57789999999999999999999
Q ss_pred cCCCc--chhHHHHHhhHhcc------------CCchhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHH
Q 046125 308 TNQTP--GLNIITEYIMGVIL------------PGEPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFI 373 (565)
Q Consensus 308 tg~~p--~l~~~sqli~g~~~------------pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~Qli 373 (565)
||.|| ++++++|++++.++ |+...+|++.+++.+.+++||+|++||||+||++|++||+||++|++
T Consensus 357 ts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~i 436 (591)
T TIGR00733 357 SSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALII 436 (591)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHH
Confidence 77899 99999999999998 34567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHH-HHHHHHH
Q 046125 374 GTIIAGTINLIVAWWLLNSVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFF-LGGLLGP 452 (565)
Q Consensus 374 Gtivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~-~iGa~~~ 452 (565)
|+++|+++++++++ ++.+.+++..++.+++++.+++|++..+ ++++.|+.++ .++|.+ .+|++++
T Consensus 437 G~~vg~~v~~~v~~-ll~~ayg~~~~~~~~~~~~l~APqA~l~--~ava~gi~~~-----------~l~~~~i~~ga~~g 502 (591)
T TIGR00733 437 GTFVGALVMAPVLN-LLIKAYGIAGTPTAKGENALPAPQAFLM--AAVTEGVFTG-----------TLEWTMVFIGAGIG 502 (591)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcccccccCCCccccCCCHHHHH--HHHHhhhcCC-----------CccHHHHHHHHHHH
Confidence 99999999999984 5666666544322234556888987755 5677776543 346655 4777777
Q ss_pred HHHHHHHhhcCCCcccCccchHHHHHHhccccCccchhhhHHHHHHHHHHHHHHhcChhh------hhhhhhhhhhhhhh
Q 046125 453 CAVWLLHKKFPNQSWIPLINLPVLLGATAYMPPATALNYNAWILVGTIFNFFVFRYRKKW------WQRYNYILSAALDA 526 (565)
Q Consensus 453 i~~~ll~r~~p~~~~~~~~~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~ky~yvlaagLia 526 (565)
+++.++++..++++ ++++.|.+.+|+++|.|. ++++++++|.++.++|+|++++. -++|.+++||||++
T Consensus 503 ~~l~~~~~~~~~~~--~~~~~p~lavgig~yLP~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIa 577 (591)
T TIGR00733 503 IALIIIDEILAKRG--SKFRTPVMAVGVGIYLPL---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIV 577 (591)
T ss_pred HHHHHHHHHhhhcc--cccCCchhHHHHHhhcch---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhc
Confidence 77777776555432 345567788999999887 48999999999999999875431 14678999999999
Q ss_pred hhHHHHHHHHHH
Q 046125 527 GTAFMTVLLYVS 538 (565)
Q Consensus 527 G~al~gvv~~~~ 538 (565)
||+++|+++++.
T Consensus 578 GE~l~Gv~~A~~ 589 (591)
T TIGR00733 578 GESLTGVVFAAI 589 (591)
T ss_pred chHHHHHHHHHH
Confidence 999999999874
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.8e-42 Score=363.80 Aligned_cols=466 Identities=16% Similarity=0.159 Sum_probs=328.4
Q ss_pred CceeeeehhcccceeecCCCCCCchHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHhchhhhhhhcccccc
Q 046125 1 VLGYGWAGLLRKYVVEPAHMWWPSTLVQISLFRTLHETEDNVGGKRHLSRVKFFVIALVCSFCWHLFPGYFFQSLQSISW 80 (565)
Q Consensus 1 l~G~g~Ag~lR~~lV~p~~l~~P~~lat~~l~~~lh~~~~~~~~~~~~~~~k~f~~~f~~~f~y~~~p~y~~p~L~~~~~ 80 (565)
++|..|+.||||.+|.++|++|||+.|+++++++..++|.+ .+..|...+....+++|.++.+-+--+-++++.
T Consensus 117 iLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~~g~~~~gd------~~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~ 190 (624)
T COG1297 117 ILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLKAGNQREGD------ASGIKLIALGGALAALYSLLASGLRVIASSLSA 190 (624)
T ss_pred hcceEEEEEeeeeeeccCCCCCCCchhHHHHHHhcCCCCCC------cccchhhhhhhHHHHHHHHHhccceeehhhHHH
Confidence 47999999999999999999999999999999998754443 268888899999999999987632211112221
Q ss_pred eeeeccCccceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 046125 81 VCWAFPNSVAAHQIGSGLNGLGVGALTLDWTAVASFLFSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNAKTFPI 160 (565)
Q Consensus 81 ~~wi~p~~~~~~~l~g~~~GlGl~~~tfDws~i~~~~g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~~~~p~ 160 (565)
|. . .|-+...+..|.| ++++|.|+++|+.+..-|+.|.+++|++..|++-+ +.|. |
T Consensus 191 --~~-----------~--~~~~~~~lg~~~S--~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~----p- 246 (624)
T COG1297 191 --AF-----------S--VGRAAFALGLGLS--LALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPG----P- 246 (624)
T ss_pred --HH-----------H--hcchhhhhccccc--HHHhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccC----C-
Confidence 11 0 1112233456777 77899999999999999999999999999998865 2221 1
Q ss_pred CCcccccCCCCceeceeeccCCCccCHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCC-
Q 046125 161 FSSHLYTAQGPEYNITLIVNDKFELDLASYKQHGRIHMSTFFALTYGFGFATIAATLTHVALFYGREILDRYRASSEGK- 239 (565)
Q Consensus 161 ~s~~~~~~~g~~y~~s~il~~~~~l~~~~y~~~s~~~~~~~~~~~~g~~~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~- 239 (565)
|+ ..+. ....+-|+++ .||+.+ +...+.+ .|+++...|++.|..++..+..
T Consensus 247 -~~-------~~~~---------~~a~~vW~s~-VrfIGa--------G~i~i~~--~wtl~~l~~pi~~gi~~~f~~~r 298 (624)
T COG1297 247 -SD-------QEAG---------VQAWKVWSSK-VRFIGA--------GAIAIAA--IWTLISLLGPILRGIKATFESAR 298 (624)
T ss_pred -Cc-------hhHH---------HHHHHHhhhe-eEEeeh--------hHHHHHH--HHHHHHHHhHHHHHHHHHHHHhh
Confidence 00 0000 0111123333 477754 5556666 6777888888888776643311
Q ss_pred -CccchhcccccCCCCchHHHHHHHHHHHHHHhhhhhcc--c-----cccCchHHHHHHHHHHHHHHhhhhheeeccCC-
Q 046125 240 -QDVHTRLMKNYKDIPSWWFQVLLVGTIAVSLALCIFLK--K-----EVQMPWWGLIFASGLAFIFTLPVSIITATTNQ- 310 (565)
Q Consensus 240 -~D~h~~~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~--~-----~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~- 310 (565)
+.+..+..|+++|+|.-|....++...+-..+...++- + +..+-.-+.+++++++|+++..+||+.|..|.
T Consensus 299 ~~~~~~~~~rte~Dl~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSs 378 (624)
T COG1297 299 GRRRAGAVSRTERDLPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSS 378 (624)
T ss_pred cccccccccchhhcCChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11112223789999998877666655544333333332 1 11223567788899999999999999998874
Q ss_pred -Cc--chhHHHHHhhHhccC------------Cc----hhHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHH
Q 046125 311 -TP--GLNIITEYIMGVILP------------GE----PIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQ 371 (565)
Q Consensus 311 -~p--~l~~~sqli~g~~~p------------g~----~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~Q 371 (565)
+| |++++++++.+.++. .. ...+++.+++.+.++.+++|++|||||||++|++||+||++|
T Consensus 379 sspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqval 458 (624)
T COG1297 379 SSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVAL 458 (624)
T ss_pred CCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHH
Confidence 46 898888877754442 11 256788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhHHHHHHHHHHHH
Q 046125 372 FIGTIIAGTINLIVAWWLLNSVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGALNWFFLGGLLG 451 (565)
Q Consensus 372 liGtivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~l~~~~~iGa~~ 451 (565)
++|+++++++..+|++ ++++.+.+-.+.. .++.+.++| |...++++..| +|+....|..+..+.++|+.+
T Consensus 459 iiG~~~~alvi~pvL~-ll~~aYgf~ga~~-r~~~~l~ap--qa~lma~ia~G------vf~~~lew~mi~~g~~~gi~l 528 (624)
T COG1297 459 IIGCFVGALVIAPVLE-LLNKAYGFAGAPP-RQGMDLAAP--QATLMATIAKG------VFTGNLEWSMILAGAGIGIVL 528 (624)
T ss_pred HHhHHhhhhhHHHHHH-HHHHHhCcCCCCC-CCCCCCcch--HHHHHHHHhcc------cCCCCcchHHHHHHHhHhhee
Confidence 9999999999999986 4556676653220 121124445 55566666655 455555666666666666666
Q ss_pred HHHHHHHHhhcCCCcccCccchHHHHHHhccccCccchhhhHHHHHHHHHHHHHHhcCh-------hhhhhhhhhhhhhh
Q 046125 452 PCAVWLLHKKFPNQSWIPLINLPVLLGATAYMPPATALNYNAWILVGTIFNFFVFRYRK-------KWWQRYNYILSAAL 524 (565)
Q Consensus 452 ~i~~~ll~r~~p~~~~~~~~~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~-------~w~~ky~yvlaagL 524 (565)
..+.+.++|+ + .++..|++.+|+|+|.|. ..++.+++|.+..|.+.|+++ +.-++..+++||||
T Consensus 529 I~id~~l~~~-----~-~~~~lpvlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGL 599 (624)
T COG1297 529 IGIDERLKGR-----G-GKLRLPVLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGL 599 (624)
T ss_pred eeccHHHhcC-----C-ccccccceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeecc
Confidence 6666666553 2 456678888999999775 378999999999999887732 23456789999999
Q ss_pred hhhhHHHHHHHHHHHhcCC
Q 046125 525 DAGTAFMTVLLYVSLGLEE 543 (565)
Q Consensus 525 iaG~al~gvv~~~~~~~~~ 543 (565)
|.||+++++++++.+...|
T Consensus 600 IvGEsL~gvi~a~ii~~~g 618 (624)
T COG1297 600 IVGESLFGVITALIIVGSG 618 (624)
T ss_pred ccchHHHHHHHHHHheecC
Confidence 9999999999998666543
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=82.20 E-value=36 Score=38.99 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=15.7
Q ss_pred HHhccccCccchhhhHHHHHHHHHHHH
Q 046125 478 GATAYMPPATALNYNAWILVGTIFNFF 504 (565)
Q Consensus 478 ~g~~~~~p~~~~~~~~~~~vG~~~~~~ 504 (565)
.|.+++.|. .....+++|.++.++
T Consensus 220 ~g~g~i~p~---~~~ls~~~G~v~~w~ 243 (624)
T PF03169_consen 220 IGSGLIVPL---WAQLSMFLGAVLAWG 243 (624)
T ss_pred cCCCeeccH---HHHHHHHHHHHHHHH
Confidence 566666554 356677788877764
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=73.37 E-value=38 Score=35.76 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=78.8
Q ss_pred HHHHHHHHhHHHHHHhhhhcCCC-Cccchhc-ccccCCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHH
Q 046125 217 LTHVALFYGREILDRYRASSEGK-QDVHTRL-MKNYKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLA 294 (565)
Q Consensus 217 i~~~~l~~~~~i~~~~~~~~~~~-~D~h~~~-~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la 294 (565)
++..++++++++++.+++...++ ++..++. .+.++++-.+..+ -.+.+++.++.+...+. -.++|
T Consensus 167 ~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~g-q~i~al~~gi~~~igl~-ilgvp----------- 233 (355)
T COG0628 167 LLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRG-QVLVALIVGILTGIGLL-ILGVP----------- 233 (355)
T ss_pred HHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHccc-----------
Confidence 34446777888888886654322 1222222 2224444444333 33334444443332111 01332
Q ss_pred HHHHhhhhheeeccCCCc----chhHHHHHhhHhccCCchhHHHHHHHHhhhhHHHH-HHhhhhcchhhccCCChhHHHH
Q 046125 295 FIFTLPVSIITATTNQTP----GLNIITEYIMGVILPGEPIANVCFKTYGYMSMAQA-ISFLSDFKLGHYMKIPPRSMFL 369 (565)
Q Consensus 295 ~i~~~~~g~~~g~tg~~p----~l~~~sqli~g~~~pg~~~anl~~~~~~~~~~~qa-~~~~~DlK~G~y~~~pPr~~f~ 369 (565)
+++..|.++|.++.=| .+..+--.+.++...+ + .....-.+++...+|- ++.+.-.=+|+-+|++|=..+.
T Consensus 234 --~alllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~-~-~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ili 309 (355)
T COG0628 234 --YALLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGG-P-WGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILL 309 (355)
T ss_pred --HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHH
Confidence 2222333334444444 2333344444444444 2 2233333444445444 4567888899999999999999
Q ss_pred HHHHHH----HHHHHHHHHHH
Q 046125 370 VQFIGT----IIAGTINLIVA 386 (565)
Q Consensus 370 ~QliGt----ivg~~v~~~v~ 386 (565)
+.+.|. ++|.+++++++
T Consensus 310 sll~g~~l~G~~G~ila~pl~ 330 (355)
T COG0628 310 SLLGGGSLFGFVGLILAPPLA 330 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999876 45666666654
No 9
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=71.54 E-value=47 Score=34.94 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=36.4
Q ss_pred HhhhhHHHH-HHhhhhcchhhccCCChhHHHHHHHHHH----HHHHHHHHHHH
Q 046125 339 YGYMSMAQA-ISFLSDFKLGHYMKIPPRSMFLVQFIGT----IIAGTINLIVA 386 (565)
Q Consensus 339 ~~~~~~~qa-~~~~~DlK~G~y~~~pPr~~f~~QliGt----ivg~~v~~~v~ 386 (565)
+.+...+|. .+.++=.=+|+-++++|=..+.+.++|. ++|.++++++.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555 5678888899999999999999999877 45666777665
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=63.67 E-value=1.5e+02 Score=30.44 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHhhhhHHHHH-HhhhhcchhhccCCChhHHHHHHHHHHH----HHHHHHHHHHH
Q 046125 335 CFKTYGYMSMAQAI-SFLSDFKLGHYMKIPPRSMFLVQFIGTI----IAGTINLIVAW 387 (565)
Q Consensus 335 ~~~~~~~~~~~qa~-~~~~DlK~G~y~~~pPr~~f~~QliGti----vg~~v~~~v~~ 387 (565)
....+.....+|-. +.++=.=.|+-+++||-..+.+.+.|.. +|.+++++++.
T Consensus 260 ~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~ 317 (327)
T PF01594_consen 260 LIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILA 317 (327)
T ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444555544 4556666789999999999999999874 46666666654
No 11
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=58.96 E-value=3.2e+02 Score=31.19 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=114.6
Q ss_pred CchHHHHHHHHHHHHHHhhhhheeeccCCCcchhHHHHHh----hHhccCCchhHHHHHHHHhhhhHHHHHHhhhh----
Q 046125 282 MPWWGLIFASGLAFIFTLPVSIITATTNQTPGLNIITEYI----MGVILPGEPIANVCFKTYGYMSMAQAISFLSD---- 353 (565)
Q Consensus 282 lp~~~~~lai~la~i~~~~~g~~~g~tg~~p~l~~~sqli----~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~D---- 353 (565)
+.+-++++.++++.+++..+.|+-=.+|.+++.++..-++ .-.+.+.++.=|.+.++.+..+.+.++ +..-
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3455677777777777777777655666666554443333 222223445555555554443333332 1111
Q ss_pred cchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCccccc
Q 046125 354 FKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLLNSVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFG 433 (565)
Q Consensus 354 lK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~ 433 (565)
..+|+.-+.|...+...=+.|.++|.+...+.-+.++.+ + +++-|...+ .+-++- -|.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~-~------------~L~fP~G~A--~Ae~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE-S------------KLPYPEGVA--CAEVLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C------------CCCCCCHHH--HHHHHH--cccccc--
Confidence 123333234667777777889999999988876555432 1 223333321 111221 111100
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC----------cccCccchHHHHHHhccccCccchhhhHHHHHHHHHHH
Q 046125 434 SQGNYGALNWFFLGGLLGPCAVWLLHKKFPNQ----------SWIPLINLPVLLGATAYMPPATALNYNAWILVGTIFNF 503 (565)
Q Consensus 434 ~g~~y~~l~~~~~iGa~~~i~~~ll~r~~p~~----------~~~~~~~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 503 (565)
.+..-..+..++.++++..++. - -|.+|.. .+.=.+.....+.|.|++.+. .....+++|.++.|
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFLG-S-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-H-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHHH
Confidence 0111223444555555444331 1 1223311 010122444455788988544 46778888888875
Q ss_pred HH-----Hhc-C-hh--------h--hhhhhhhhhhhhhhhhHHHHHHHH
Q 046125 504 FV-----FRY-R-KK--------W--WQRYNYILSAALDAGTAFMTVLLY 536 (565)
Q Consensus 504 ~~-----rr~-~-~~--------w--~~ky~yvlaagLiaG~al~gvv~~ 536 (565)
.+ +++ . +. | |.+|---++.|.+.++++..++..
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 52 121 1 10 1 222211268999999999988754
No 12
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=57.81 E-value=1e+02 Score=31.85 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=30.9
Q ss_pred HHHhhhhcchhhccCCChhHHHHHHHHHHH----HHHHHHHHHH
Q 046125 347 AISFLSDFKLGHYMKIPPRSMFLVQFIGTI----IAGTINLIVA 386 (565)
Q Consensus 347 a~~~~~DlK~G~y~~~pPr~~f~~QliGti----vg~~v~~~v~ 386 (565)
-.+.++-.=.|.-++++|=..+.+.+.|.- +|.++.++++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778999999999999999998874 4555665554
No 13
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=49.51 E-value=1.6e+02 Score=32.44 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHHhhhhheeeccCCCcchhHHHHHhhHhccCCchhH
Q 046125 253 IPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFTLPVSIITATTNQTPGLNIITEYIMGVILPGEPIA 332 (565)
Q Consensus 253 vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~~~~g~~~g~tg~~p~l~~~sqli~g~~~pg~~~a 332 (565)
.++++++...++.+++.+........ +..|+ .--...+.++.++..+.+...++.++ +..++-.. +...
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~~~--~~~~~-~~~~~~~fl~~~ii~~~i~~~~~~~~--~~~~~~F~------~G~~ 319 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFVII--KIKWY-FPEIAALFLIIGIIIGLIRHRSGKSP--NEIVKAFF------KGMG 319 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhhhc--ccccc-HHHHHHHHHHHHHHHHHHHhhccCCH--hHHHHHHH------HHHH
Confidence 46778888888888765442000011 22222 23333344444444555544344433 22222222 1245
Q ss_pred HHHHHHHhhhhHHHHHHhhhhcc
Q 046125 333 NVCFKTYGYMSMAQAISFLSDFK 355 (565)
Q Consensus 333 nl~~~~~~~~~~~qa~~~~~DlK 355 (565)
+++..+....-+.-+.-+++|.|
T Consensus 320 ~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 320 DMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc
Confidence 55555555555556666777776
No 14
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=42.69 E-value=3.8e+02 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046125 366 SMFLVQFIGTIIAGTINLIVAWWLLN 391 (565)
Q Consensus 366 ~~f~~QliGtivg~~v~~~v~~~~l~ 391 (565)
.....-++|.+++.++.+..+++++.
T Consensus 213 ~~~~~~~ig~~~afv~g~l~i~~ll~ 238 (259)
T PF02673_consen 213 GSWPPLLIGFVVAFVVGYLAIKWLLR 238 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888887777765
No 15
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.43 E-value=22 Score=37.24 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=21.4
Q ss_pred cCCCC-chHHHHHHHHHHHHHHhhhhhccc
Q 046125 250 YKDIP-SWWFQVLLVGTIAVSLALCIFLKK 278 (565)
Q Consensus 250 y~~vP-~ww~~~~~~~s~~l~~~~~~~~~~ 278 (565)
|...| +|+.++++++..+++++++.+|+.
T Consensus 183 yep~~~~~~vl~~~fvl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAIVLFPLWPR 212 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcH
Confidence 44444 777777777778888888888885
No 16
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=30.93 E-value=5.8e+02 Score=25.86 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=35.1
Q ss_pred hHhccCCch--hHHHHHHHHhhhhHHHHHHhhhhcchhhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046125 322 MGVILPGEP--IANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTIIAGTINLIVAWWLLNSV 393 (565)
Q Consensus 322 ~g~~~pg~~--~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGtivg~~v~~~v~~~~l~~~ 393 (565)
.+.++||-. .-.|+.+.|.... ++.+-..| ..-.....-.+|+++|.+.-.=++++++++.
T Consensus 154 ~AMIlPGiSGS~iLlilG~Y~~vl--~ai~~~~~---------~~~~~L~~f~~G~~~Gi~~~skll~~ll~~~ 216 (257)
T PF04018_consen 154 CAMILPGISGSFILLILGLYEPVL--SAISDLID---------SNIPVLIPFGIGVVIGILLFSKLLSYLLKRY 216 (257)
T ss_pred HHHhcCCCcHHHHHHHHHhHHHHH--HHHHHhhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668843 3446666665433 33333322 1122334457788888888877888888654
No 17
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=29.90 E-value=68 Score=31.77 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=27.9
Q ss_pred cCCCCchHHHH-HHHHHHHHHHhhhhhccccccCchHHHHHHH--HHHHHHHhhhhh
Q 046125 250 YKDIPSWWFQV-LLVGTIAVSLALCIFLKKEVQMPWWGLIFAS--GLAFIFTLPVSI 303 (565)
Q Consensus 250 y~~vP~ww~~~-~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai--~la~i~~~~~g~ 303 (565)
|+..|.|-|+. ++++..++++++..+|+.....-+|.+-++. +++++|++.+.+
T Consensus 104 ye~~~~~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivR 160 (224)
T PF03839_consen 104 YEPSPLMQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVR 160 (224)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHHH
Confidence 55444443444 3334444555666788865555566554432 455565554433
No 18
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=27.86 E-value=2.7e+02 Score=25.80 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=22.9
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 046125 365 RSMFLVQFIGT-IIAGTINLIVAWWLLN 391 (565)
Q Consensus 365 r~~f~~QliGt-ivg~~v~~~v~~~~l~ 391 (565)
..-..+|++|| ++|++++++++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45578899998 8899999999988775
No 19
>PRK10983 putative inner membrane protein; Provisional
Probab=27.31 E-value=7.8e+02 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=31.8
Q ss_pred hHHHHHHhhhhcchhhccCCChhHHHHHHHHHHH----HHHHHHHHHH
Q 046125 343 SMAQAISFLSDFKLGHYMKIPPRSMFLVQFIGTI----IAGTINLIVA 386 (565)
Q Consensus 343 ~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliGti----vg~~v~~~v~ 386 (565)
...+..+.++=.=.|.-+++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557777788899999999999999888875 3444555443
No 20
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=22.37 E-value=1.6e+02 Score=21.33 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 046125 205 TYGFGFATIAATLTHVALFYGREILDRYR 233 (565)
Q Consensus 205 ~~g~~~~~~~~~i~~~~l~~~~~i~~~~~ 233 (565)
+||++++.+...+.++.. ..|.+.+.++
T Consensus 10 sYg~t~~~l~~l~~~~~~-~~r~~~~~l~ 37 (46)
T PF04995_consen 10 SYGVTALVLAGLIVWSLR-RRRRLRKELK 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 567787788887777754 4555555554
No 21
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=21.39 E-value=5.5e+02 Score=25.76 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCcccchhhHHHHhHHHhhhcCCcccccCCCchhH
Q 046125 361 KIPPRSMFLVQFIGTIIAGTINLIVAWWLLNSVEHICQPGLLPKNSPWTCPNDRVFFDASVIWGLVGPRRIFGSQGNYGA 440 (565)
Q Consensus 361 ~~pPr~~f~~QliGtivg~~v~~~v~~~~l~~~~~~~~~~~~~~~~~~t~p~~~~~~~~sv~wg~ig~~~~f~~g~~y~~ 440 (565)
+++-|..|.++++=..+|++...++ .+-.+.+|+-..+ | +. +.-+.+.+ +.- +| |...|. -..
T Consensus 121 ~l~~~~l~~a~ilig~LGAvmDvai--sIaSsl~El~~~~---p--~i--s~~eL~~S-G~~---IG-rDimGt---m~N 183 (244)
T PF07907_consen 121 GLDFRGLFFAGILIGSLGAVMDVAI--SIASSLFELKRHN---P--DI--SRKELFKS-GMN---IG-RDIMGT---MIN 183 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhC---C--CC--CHHHHHHH-HHH---HH-HHHHHH---HHH
Confidence 4677889999998888899888877 4555555554322 1 11 12222222 211 23 233320 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCccchH
Q 046125 441 LNWFFLGGLLGPCAVWLLHKKFPNQSWIPLINLP 474 (565)
Q Consensus 441 l~~~~~iGa~~~i~~~ll~r~~p~~~~~~~~~~p 474 (565)
......+|-.+|...++.+..+| +.+-+|..
T Consensus 184 TLifay~g~sl~l~ll~~~~~~~---~~~~ln~~ 214 (244)
T PF07907_consen 184 TLIFAYIGSSLPLLLLYLANGYS---FGQILNSK 214 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC---HHHHHchH
Confidence 33334477788888887765444 32445555
No 22
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.35 E-value=1.8e+02 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=23.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhccccccCchHHHHHHHHHHHHHH
Q 046125 250 YKDIPSWWFQVLLVGTIAVSLALCIFLKKEVQMPWWGLIFASGLAFIFT 298 (565)
Q Consensus 250 y~~vP~ww~~~~~~~s~~l~~~~~~~~~~~~~lp~~~~~lai~la~i~~ 298 (565)
|+.++.| -+..+++.+++.++...++ +.+|+.+++++.++++.+
T Consensus 24 dp~l~~~-ml~a~l~~~~v~v~ig~l~----~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 24 DPKLPWL-MLGAFLGPIAVFVLIGLLF----GSWWYWLIIGILLGLLAA 67 (224)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHH
Confidence 4555544 3444444444444444444 445667777777766654
Done!