Query 046125
Match_columns 565
No_of_seqs 157 out of 1223
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1a_A Integrin alpha-IIB; sin 13.9 1.7E+02 0.0057 20.1 3.2 18 250-267 5-22 (42)
2 2knc_A Integrin alpha-IIB; tra 10.6 2.3E+02 0.0079 20.5 3.3 17 250-266 7-23 (54)
3 3llq_A Aquaporin Z 2; aquapori 10.5 1E+03 0.035 22.5 13.1 22 362-383 155-176 (256)
4 2l8s_A Integrin alpha-1; trans 9.3 5.5E+02 0.019 18.5 4.9 37 118-155 2-38 (54)
5 3mk7_C Cytochrome C oxidase, C 8.7 6.1E+02 0.021 24.6 6.9 31 246-277 47-77 (311)
6 3h3g_B Parathyroid hormone-rel 8.4 2.2E+02 0.0076 17.0 2.0 17 351-376 4-20 (24)
7 2jwa_A Receptor tyrosine-prote 7.9 2.4E+02 0.0084 19.5 2.4 19 493-511 23-41 (44)
8 3s0x_A Peptidase A24B, FLAK do 6.9 4.3E+02 0.015 25.0 4.5 22 250-271 28-49 (237)
9 2l2t_A Receptor tyrosine-prote 6.8 3.6E+02 0.012 18.6 2.9 16 496-511 25-40 (44)
10 3arc_L Photosystem II reaction 6.5 3.5E+02 0.012 17.8 2.4 15 284-298 18-32 (37)
No 1
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=13.87 E-value=1.7e+02 Score=20.07 Aligned_cols=18 Identities=33% Similarity=0.853 Sum_probs=10.8
Q ss_pred cCCCCchHHHHHHHHHHH
Q 046125 250 YKDIPSWWFQVLLVGTIA 267 (565)
Q Consensus 250 y~~vP~ww~~~~~~~s~~ 267 (565)
+.++|.|.++...+..+.
T Consensus 5 ~~~vp~wiIi~s~l~GLl 22 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLL 22 (42)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHH
Confidence 456888876655544443
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.59 E-value=2.3e+02 Score=20.49 Aligned_cols=17 Identities=35% Similarity=0.927 Sum_probs=9.9
Q ss_pred cCCCCchHHHHHHHHHH
Q 046125 250 YKDIPSWWFQVLLVGTI 266 (565)
Q Consensus 250 y~~vP~ww~~~~~~~s~ 266 (565)
..++|.|.++...+..+
T Consensus 7 ~~~vp~wiIi~svl~GL 23 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGL 23 (54)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHH
Confidence 45678777655544433
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=10.53 E-value=1e+03 Score=22.54 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=15.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 046125 362 IPPRSMFLVQFIGTIIAGTINL 383 (565)
Q Consensus 362 ~pPr~~f~~QliGtivg~~v~~ 383 (565)
.++...|..|+++|.+=.++..
T Consensus 155 ~s~~~~f~~E~i~Tf~Lv~~il 176 (256)
T 3llq_A 155 YSLVSALLIEIILTAFFLIVIL 176 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999887555443
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.27 E-value=5.5e+02 Score=18.52 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 046125 118 FSPLICPFFAIANVFVGYAFIIYVVIPVAYWGLNLYNA 155 (565)
Q Consensus 118 g~gl~~p~~~~~~~~~G~vl~~~il~P~~~~~~n~~~~ 155 (565)
|.|--+|+|..+-..+|.++-..++.-++|. -|.+..
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK-~GFFKR 38 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWK-IGFFKR 38 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHH-HHHTTS
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHH-cCcccC
Confidence 5566788887666566655554444434443 676543
No 5
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.72 E-value=6.1e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.709 Sum_probs=17.1
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhhhhcc
Q 046125 246 LMKNYKDIPSWWFQVLLVGTIAVSLALCIFLK 277 (565)
Q Consensus 246 ~~~~y~~vP~ww~~~~~~~s~~l~~~~~~~~~ 277 (565)
+..-.+.+|.||... ++++++.+++-...++
T Consensus 47 i~e~~nplp~ww~~~-f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 47 IEEYDNPLPRWWFLL-FIGTLVFGILYLVLYP 77 (311)
T ss_dssp BCBCCCCCCHHHHHH-HHHHHHHHHHHHHHST
T ss_pred hhhccCCCChHHHHH-HHHHHHHHHHHHHHHh
Confidence 333467788887544 5555555544444443
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.35 E-value=2.2e+02 Score=17.04 Aligned_cols=17 Identities=35% Similarity=0.766 Sum_probs=12.7
Q ss_pred hhhcchhhccCCChhHHHHHHHHHHH
Q 046125 351 LSDFKLGHYMKIPPRSMFLVQFIGTI 376 (565)
Q Consensus 351 ~~DlK~G~y~~~pPr~~f~~QliGti 376 (565)
+||+| |.+|.-++++-+
T Consensus 4 ~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp HHHHH---------HHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHHHh
Confidence 68888 888887777643
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.90 E-value=2.4e+02 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhcChh
Q 046125 493 AWILVGTIFNFFVFRYRKK 511 (565)
Q Consensus 493 ~~~~vG~~~~~~~rr~~~~ 511 (565)
..++++..+..|+|||+-+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 5566777777888888644
No 8
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=6.87 E-value=4.3e+02 Score=25.00 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=15.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHh
Q 046125 250 YKDIPSWWFQVLLVGTIAVSLA 271 (565)
Q Consensus 250 y~~vP~ww~~~~~~~s~~l~~~ 271 (565)
+|++|.|.+...++.++.+++.
T Consensus 28 ~R~IpN~l~~~ll~~gi~l~~~ 49 (237)
T 3s0x_A 28 SREIEDYIWIFLAVFGVLFAIY 49 (237)
T ss_dssp --CTHHHHHHHHHHHHHHHHHH
T ss_pred hcEeCchhHHHHHHHHHHHHHH
Confidence 5889999888888777765543
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.82 E-value=3.6e+02 Score=18.57 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcChh
Q 046125 496 LVGTIFNFFVFRYRKK 511 (565)
Q Consensus 496 ~vG~~~~~~~rr~~~~ 511 (565)
+++....+|+|||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4445566788887654
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.52 E-value=3.5e+02 Score=17.75 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 046125 284 WWGLIFASGLAFIFT 298 (565)
Q Consensus 284 ~~~~~lai~la~i~~ 298 (565)
.|++++..+++.+|+
T Consensus 18 y~GLLlifvlavlFs 32 (37)
T 3arc_L 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 455555555555554
Done!