Query 046125
Match_columns 565
No_of_seqs 157 out of 1223
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 15:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046125.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046125hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 8.1 1.2E+02 0.0087 17.7 2.3 15 522-536 2-16 (34)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 7.9 1.3E+02 0.0094 18.1 2.4 15 284-298 18-32 (37)
3 d1j4na_ f.19.1.1 (A:) Aquapori 6.5 5.3E+02 0.039 21.7 7.4 17 369-385 101-117 (249)
4 d1zava1 d.58.62.1 (A:1-177) Ri 3.8 3.1E+02 0.022 22.2 3.4 29 355-383 127-155 (177)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 3.4 2.8E+02 0.02 19.4 2.4 18 523-540 69-86 (86)
6 d1zcea1 b.122.1.8 (A:2-147) Hy 3.2 1.8E+02 0.013 23.3 1.2 16 345-360 34-49 (146)
7 d1h2sa_ f.13.1.1 (A:) Sensory 3.1 4.4E+02 0.032 22.1 3.8 34 492-527 12-45 (225)
8 d2evea1 b.122.1.8 (A:2-149) Hy 2.8 2.2E+02 0.016 22.9 1.2 16 345-360 31-46 (148)
9 d2gbsa1 b.122.1.8 (A:2-137) Hy 2.7 2.3E+02 0.017 22.4 1.2 16 345-360 33-48 (136)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.3 7.8E+02 0.057 15.3 4.4 21 215-235 18-38 (46)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.10 E-value=1.2e+02 Score=17.67 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=11.3
Q ss_pred hhhhhhhHHHHHHHH
Q 046125 522 AALDAGTAFMTVLLY 536 (565)
Q Consensus 522 agLiaG~al~gvv~~ 536 (565)
+++++|+++..+-+.
T Consensus 2 a~fiagta~tmig~t 16 (34)
T d1q90m_ 2 AEFIAGTALTMVGMT 16 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHH
Confidence 688999988766544
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.94 E-value=1.3e+02 Score=18.11 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHH
Q 046125 284 WWGLIFASGLAFIFT 298 (565)
Q Consensus 284 ~~~~~lai~la~i~~ 298 (565)
.|++++..+++.+|+
T Consensus 18 y~GlLlifvl~vLFs 32 (37)
T d2axtl1 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 3
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.45 E-value=5.3e+02 Score=21.74 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046125 369 LVQFIGTIIAGTINLIV 385 (565)
Q Consensus 369 ~~QliGtivg~~v~~~v 385 (565)
.+|++|.++|+.+...+
T Consensus 101 ~aQ~lGa~~g~~~~~~~ 117 (249)
T d1j4na_ 101 IAQCVGAIVATAILSGI 117 (249)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHhhheee
Confidence 67999999988777655
No 4
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.82 E-value=3.1e+02 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.1
Q ss_pred chhhccCCChhHHHHHHHHHHHHHHHHHH
Q 046125 355 KLGHYMKIPPRSMFLVQFIGTIIAGTINL 383 (565)
Q Consensus 355 K~G~y~~~pPr~~f~~QliGtivg~~v~~ 383 (565)
++-.+.+.|+|...++|++|.+-+..-+.
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 34456789999999999999988766544
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.39 E-value=2.8e+02 Score=19.38 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHh
Q 046125 523 ALDAGTAFMTVLLYVSLG 540 (565)
Q Consensus 523 gLiaG~al~gvv~~~~~~ 540 (565)
++.++.++.|+.+.|+.|
T Consensus 69 ~l~a~~G~~gvaiGfa~Q 86 (86)
T d2vv5a3 69 SVIAVLGAAGLVVGLALQ 86 (86)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 456666666666666554
No 6
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.23 E-value=1.8e+02 Score=23.35 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.1
Q ss_pred HHHHHhhhhcchhhcc
Q 046125 345 AQAISFLSDFKLGHYM 360 (565)
Q Consensus 345 ~qa~~~~~DlK~G~y~ 360 (565)
.||-+++.|+|.|.+.
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 5999999999999764
No 7
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=3.05 E-value=4.4e+02 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.080 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhhhh
Q 046125 492 NAWILVGTIFNFFVFRYRKKWWQRYNYILSAALDAG 527 (565)
Q Consensus 492 ~~~~~vG~~~~~~~rr~~~~w~~ky~yvlaagLiaG 527 (565)
+..|+.+.++-.+.+|+.+..++++.++ ++ ++++
T Consensus 12 ~~~m~~~tv~F~~~~~~~~~~~r~~~~~-~~-~It~ 45 (225)
T d1h2sa_ 12 AIGMLVGTLAFAWAGRDAGSGERRYYVT-LV-GISG 45 (225)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTTHHHHHH-HH-HHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCccchhhHH-HH-HHHH
Confidence 3456667666566666655544554443 33 3654
No 8
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=2.79 E-value=2.2e+02 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.5
Q ss_pred HHHHHhhhhcchhhcc
Q 046125 345 AQAISFLSDFKLGHYM 360 (565)
Q Consensus 345 ~qa~~~~~DlK~G~y~ 360 (565)
.||.+++.|+|.|-..
T Consensus 31 yqArn~lr~M~~GD~~ 46 (148)
T d2evea1 31 YQARNFLRTMAEGDEF 46 (148)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHhcccCCEE
Confidence 4999999999999643
No 9
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=2.68 E-value=2.3e+02 Score=22.42 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.7
Q ss_pred HHHHHhhhhcchhhcc
Q 046125 345 AQAISFLSDFKLGHYM 360 (565)
Q Consensus 345 ~qa~~~~~DlK~G~y~ 360 (565)
.||-+++.|+|.|-+.
T Consensus 33 yqArn~mr~M~~GD~~ 48 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDRA 48 (136)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhccCCEE
Confidence 5899999999999654
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.25 E-value=7.8e+02 Score=15.28 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhh
Q 046125 215 ATLTHVALFYGREILDRYRAS 235 (565)
Q Consensus 215 ~~i~~~~l~~~~~i~~~~~~~ 235 (565)
+.++-...+..|.+|..+|++
T Consensus 18 ~~l~~l~yy~KR~~Ws~lKsr 38 (46)
T d1ppjd2 18 GLLLPLVYAMKRHKWSVLKSR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhhcccc
Confidence 333444456677889888764
Done!